3248 198 62 16 chr4 0 958 -184287704 + L1 LINE L1 2957 3998 -2148 2292 84 7 10 chr4 958 1257 -184287405 + AluSq SINE Alu 1 298 -15 3248 198 62 16 chr4 1257 1343 -184287319 + L1 LINE L1 3998 4079 -2067 464 286 7 0 chr4 1852 1992 -184286670 + L1MC5 LINE L1 6650 6790 -1171 587 280 54 16 chr4 2027 2389 -184286273 + L1MC5 LINE L1 7494 7913 -48 258 310 54 29 chr4 2436 2675 -184285987 - L1M4 LINE L1 -1161 4985 4741 732 266 24 34 chr4 3203 3410 -184285252 + L1M4b LINE L1 17 221 -6638 299 116 0 0 chr4 3510 3553 -184285109 + AluSc SINE Alu 247 289 -10 459 262 128 0 chr4 3570 3742 -184284920 - MER33 DNA MER1_type -129 195 2 707 206 14 27 chr4 3947 4093 -184284569 - MER61D LTR ERV1 -20 481 338 2071 123 0 0 chr4 4560 4870 -184283792 - AluSc SINE Alu 0 312 3 3644 127 37 0 chr4 5128 5705 -184282957 - MER51C LTR ERV1 0 640 1 2267 78 0 4 chr4 5950 6231 -184282431 - AluSc SINE Alu -17 292 13 336 227 40 0 chr4 6232 6307 -184282355 + MER5B DNA MER1_type 85 162 -16 435 127 0 0 chr4 6765 6828 -184281834 + AluS SINE Alu 2 64 -249 8786 63 2 3 chr4 6842 7914 -184280748 - MER11C LTR ERVK 0 1071 1 1566 111 0 0 chr4 7914 8121 -184280541 + AluSc SINE Alu 88 294 -15 280 250 0 50 chr4 8177 8277 -184280385 - L1ME3A LINE L1 -8 6162 6068 1453 224 0 14 chr4 8423 8717 -184279945 - AluJb SINE Alu -22 290 1 2156 104 7 20 chr4 8721 9020 -184279642 - AluY SINE Alu -16 295 1 421 178 14 0 chr4 9078 9151 -184279511 - AluJo SINE Alu -168 134 61 568 229 93 19 chr4 9269 9328 -184279334 - L1M3c LINE L1 -4674 1291 1238 2247 106 7 0 chr4 9328 9629 -184279033 - AluSx SINE Alu -9 303 1 568 229 93 19 chr4 9629 9893 -184278769 - L1M3c LINE L1 -4727 1238 945 25330 88 8 10 chr4 9898 11932 -184276730 - L1PA7 LINE L1 0 6154 4117 2347 105 0 0 chr4 11932 12227 -184276435 - AluSx SINE Alu -17 295 1 25330 88 8 10 chr4 12227 13977 -184274685 - L1PA7 LINE L1 -2037 4117 2380 2374 78 0 7 chr4 13977 14270 -184274392 - AluY SINE Alu -20 291 1 25330 88 8 10 chr4 14270 14938 -184273724 - L1PA7 LINE L1 -3774 2380 1712 1779 276 42 47 chr4 14931 14959 -184273703 - L1M3c LINE L1 -4984 971 944 * 2167 116 3 0 chr4 14959 15253 -184273409 - AluSx SINE Alu -17 295 1 1779 276 42 47 chr4 15253 15974 -184272688 - L1M3c LINE L1 -5011 944 344 424 320 37 0 chr4 15952 16157 -184272505 - L1M3a LINE L1 -5219 736 550 * 509 325 68 24 chr4 16159 16411 -184272251 - L1M3a LINE L1 -5501 454 192 284 136 27 55 chr4 16531 16641 -184272021 + MER4-int LTR ERV1 567 673 -5925 409 137 14 27 chr4 16985 17058 -184271604 + MER4-int LTR ERV1 739 810 -5788 263 95 0 0 chr4 17086 17128 -184271534 + MER4-int LTR ERV1 685 726 -5872 232 178 0 44 chr4 17161 17206 -184271456 + LTR49 LTR ERV1 271 313 -282 640 103 31 0 chr4 17226 17323 -184271339 + MER4-int LTR ERV1 993 1092 -5506 2235 100 0 10 chr4 17324 17623 -184271039 + AluSc SINE Alu 1 296 -13 6510 97 152 147 chr4 17766 18044 -184270618 + MER4-int LTR ERV1 532 807 -5791 2364 62 31 0 chr4 18044 18332 -184270330 + AluY SINE Alu 1 297 -14 6510 97 152 147 chr4 18332 18740 -184269922 + MER4-int LTR ERV1 807 1211 -5387 2395 73 0 17 chr4 18740 19042 -184269620 + AluY SINE Alu 1 297 -14 6510 97 152 147 chr4 19042 19524 -184269138 + MER4-int LTR ERV1 1211 1689 -4909 2001 154 0 20 chr4 19524 19829 -184268833 - AluSx SINE Alu -13 299 1 6510 97 152 147 chr4 19829 20848 -184267814 + MER4-int LTR ERV1 1689 3533 -3065 1385 86 34 75 chr4 20903 21033 -184267629 + MER4-int LTR ERV1 3837 3952 -2646 2406 78 0 28 chr4 21033 21353 -184267309 - AluY SINE Alu 0 311 1 1385 86 34 75 chr4 21353 21489 -184267173 + MER4-int LTR ERV1 3952 4092 -2506 1965 118 30 0 chr4 21789 22080 -184266582 - AluSg SINE Alu 0 299 1 1163 117 0 0 chr4 22255 22418 -184266244 - AluSg/x SINE Alu -13 297 135 333 210 50 0 chr4 22627 22727 -184265935 - Charlie5 DNA MER1_type -41 2571 2467 1574 77 39 0 chr4 22728 22935 -184265727 - AluY SINE Alu 0 311 97 239 139 0 23 chr4 23235 23278 -184265384 + L1MB8 LINE L1 841 882 -5660 22 56 0 0 chr4 23532 23568 -184265094 + AT_rich Low_complexity Low_complexity 1 36 0 369 0 0 0 chr4 23644 23685 -184264977 + (TG)n Simple_repeat Simple_repeat 2 42 0 316 290 59 32 chr4 23714 23900 -184264762 - L1MC4a LINE L1 -1878 5930 5740 186 295 92 46 chr4 23909 24126 -184264536 - L2 LINE L2 -228 3044 2818 195 322 0 0 chr4 24276 24335 -184264327 - L2 LINE L2 -694 2620 2562 235 297 77 13 chr4 24419 24574 -184264088 - L1MC4a LINE L1 -2328 5480 5316 552 237 87 27 chr4 25580 25799 -184262863 + L2 LINE L2 3077 3308 -5 265 313 20 30 chr4 26502 26601 -184262061 + MIR3 SINE MIR 83 180 -28 2443 66 0 3 chr4 28507 28809 -184259853 + AluSc SINE Alu 1 301 -8 1062 238 155 32 chr4 28983 29626 -184259036 + L1MB8 LINE L1 1386 2384 -4441 1599 198 44 68 chr4 29660 29826 -184258836 + L1MB8 LINE L1 6159 6327 -349 2410 91 3 7 chr4 29826 30135 -184258527 - AluSp SINE Alu -5 308 1 1599 198 44 68 chr4 30135 30422 -184258240 + L1MB8 LINE L1 6327 6601 -75 3534 125 0 4 chr4 30592 31104 -184257558 + MER9 LTR ERVK 1 510 -1 287 308 56 0 chr4 32556 32663 -184255999 + MIR SINE MIR 31 143 -119 353 252 220 13 chr4 32759 33072 -184255590 + L2 LINE L2 2871 3248 -65 224 147 26 58 chr4 33099 33292 -184255370 + (CAGAGA)n Simple_repeat Simple_repeat 1 186 0 228 179 13 51 chr4 33204 33282 -184255380 + (CAGAA)n Simple_repeat Simple_repeat 5 79 0 667 230 0 14 chr4 33908 34047 -184254615 + AluJo SINE Alu 2 138 -174 1303 148 0 48 chr4 35497 35726 -184252936 - AluJo SINE Alu -13 299 82 555 282 12 0 chr4 36557 36727 -184251935 + L1MB2 LINE L1 16 187 -6355 2183 113 7 3 chr4 37452 37765 -184250897 + AluSx SINE Alu 1 314 0 1706 182 0 7 chr4 37826 38123 -184250539 - AluJb SINE Alu -17 295 1 917 251 118 30 chr4 38142 38505 -184250157 - MER21B LTR ERV1 -69 794 400 300 274 32 21 chr4 38519 38614 -184250048 + MER92B LTR ERV1 33 128 -508 803 214 92 74 chr4 38648 38819 -184249843 + MER92B LTR ERV1 294 460 -176 2288 87 0 3 chr4 38819 39108 -184249554 - AluSc SINE Alu -21 288 1 803 214 92 74 chr4 39108 39273 -184249389 + MER92B LTR ERV1 460 636 0 539 110 37 0 chr4 39767 39849 -184248813 - AluSc SINE Alu -224 85 1 2187 106 3 6 chr4 39905 40216 -184248446 + AluY SINE Alu 2 311 0 508 255 98 76 chr4 40221 41114 -184247548 + L1MB2 LINE L1 2416 3331 -3313 1408 99 0 35 chr4 41121 41322 -184247340 + AluYa5 SINE Alu 103 296 -15 442 293 68 8 chr4 41358 41624 -184247038 + L1MA8 LINE L1 4527 4808 -1338 750 287 126 2 chr4 41658 42072 -184246590 + L1MB2 LINE L1 5675 6139 -32 1786 185 65 120 chr4 42202 43328 -184245334 + L1MA8 LINE L1 4884 5937 -354 226 284 0 25 chr4 43331 43412 -184245250 + L1MB2 LINE L1 5544 5622 -1022 2391 80 0 3 chr4 43519 43821 -184244841 + AluY SINE Alu 1 301 -10 360 0 0 0 chr4 43821 43861 -184244801 + (TA)n Simple_repeat Simple_repeat 2 41 0 404 246 103 17 chr4 43861 44036 -184244626 + L1MB2 LINE L1 6147 6336 -345 3870 98 72 3 chr4 44039 44610 -184244052 + LTR66 LTR ERVL 1 610 0 13495 98 7 1 chr4 44610 46396 -184242266 + HERVL66 LTR ERVL 1 1797 -2532 313 71 54 71 chr4 46376 46432 -184242230 + HERVL66 LTR ERVL 2654 2708 -1621 * 5097 74 5 12 chr4 46423 47561 -184241101 + HERVL66 LTR ERVL 3064 4329 0 4018 83 88 4 chr4 47561 48117 -184240545 + LTR66 LTR ERVL 1 603 -7 2135 96 4 7 chr4 48162 48434 -184240228 + AluSc SINE Alu 13 283 -26 490 309 75 10 chr4 48458 48753 -184239909 + L1MB2 LINE L1 6352 6665 -4 1013 86 0 0 chr4 49004 49132 -184239530 + AluSg/x SINE Alu 168 295 -15 1857 168 28 39 chr4 49132 49320 -184239342 - MSTA LTR MaLR -66 362 178 2354 83 0 32 chr4 49320 49632 -184239030 + AluY SINE Alu 1 302 -9 1857 168 28 39 chr4 49632 49807 -184238855 - MSTA LTR MaLR -250 178 3 808 270 41 4 chr4 49808 50078 -184238584 + L1MB1 LINE L1 5712 5991 -177 269 287 40 30 chr4 50076 50177 -184238485 + L1MA6 LINE L1 125 226 -5729 * 881 293 115 45 chr4 50181 50799 -184237863 + L1MA6 LINE L1 189 849 -5106 1177 231 49 81 chr4 50825 51088 -184237574 + L1MA6 LINE L1 3963 4233 -1801 658 227 0 0 chr4 51088 51216 -184237446 - FLAM_C SINE Alu -4 129 2 1177 231 49 81 chr4 51216 51544 -184237118 + L1MA6 LINE L1 4233 4535 -1499 330 213 13 0 chr4 51741 51816 -184236846 + L1MA6 LINE L1 5754 5829 -359 2138 80 20 40 chr4 51966 52265 -184236397 + AluY SINE Alu 4 296 -15 1018 295 74 15 chr4 52265 52740 -184235922 + L1MB2 LINE L1 5665 6167 -4 26 0 0 0 chr4 52984 53010 -184235652 + AT_rich Low_complexity Low_complexity 1 26 0 2156 107 6 22 chr4 53103 53420 -184235242 + AluSp SINE Alu 1 312 -1 269 174 22 0 chr4 53772 53818 -184234844 + L1M4c LINE L1 1 47 -5908 467 189 32 0 chr4 53850 53945 -184234717 - L1PBa LINE L1 -6463 400 303 24 32 0 0 chr4 56309 56340 -184232322 + AT_rich Low_complexity Low_complexity 1 31 0 2216 113 3 0 chr4 56884 57176 -184231486 + AluSq SINE Alu 1 293 -20 744 327 86 22 chr4 57179 57540 -184231122 + L1M4c LINE L1 71 454 -5501 2175 283 73 38 chr4 57552 59459 -184229203 + L1M4c LINE L1 344 1794 -4241 2224 99 7 0 chr4 59467 59760 -184228902 + AluY SINE Alu 1 295 -16 404 173 0 62 chr4 59832 59913 -184228749 + AluJo SINE Alu 61 136 -176 1726 186 0 14 chr4 59950 60235 -184228427 + AluJb SINE Alu 1 281 -31 1921 244 106 37 chr4 60277 60491 -184228171 + L1M4c LINE L1 1774 1972 -4062 2205 118 7 0 chr4 60491 60795 -184227867 + AluY SINE Alu 1 306 -5 1921 244 106 37 chr4 60795 60868 -184227794 + L1M4c LINE L1 1972 2039 -3995 1083 305 58 8 chr4 60868 61245 -184227417 + MSTD LTR MaLR 1 396 0 1921 244 106 37 chr4 61245 62169 -184226493 + L1M4c LINE L1 2039 3071 -2963 296 273 7 93 chr4 62171 62216 -184226446 - MER67C LTR ERV1 -573 137 90 2207 98 3 14 chr4 62216 62513 -184226149 + AluSg SINE Alu 1 294 -16 296 273 7 93 chr4 62513 62617 -184226045 - MER67C LTR ERV1 -620 90 1 264 122 0 0 chr4 63092 63133 -184225529 + (A)n Simple_repeat Simple_repeat 1 41 0 1508 203 0 23 chr4 63194 63495 -184225167 - AluJb SINE Alu -18 294 1 2156 51 83 11 chr4 63500 63776 -184224886 - AluY SINE Alu -15 296 1 871 283 79 6 chr4 63822 64140 -184224522 - MER21B LTR ERV1 -107 756 416 1293 223 156 31 chr4 64192 64704 -184223958 + MER92B LTR ERV1 59 634 -2 312 48 0 0 chr4 65876 65918 -184222744 + (TG)n Simple_repeat Simple_repeat 1 42 0 5159 187 51 13 chr4 66436 68139 -184220523 + L1MA3 LINE L1 4085 5722 -583 2211 54 91 0 chr4 68139 68415 -184220247 - AluY SINE Alu -10 301 1 5159 187 51 13 chr4 68415 68791 -184219871 + L1MA3 LINE L1 5722 6256 -49 2115 84 42 7 chr4 68791 69078 -184219584 + AluY SINE Alu 1 297 -14 5159 187 51 13 chr4 69078 69130 -184219532 + L1MA3 LINE L1 6256 6305 0 373 288 49 10 chr4 69556 69761 -184218901 + L1MB2 LINE L1 4639 4851 -1295 1086 257 39 12 chr4 69763 70098 -184218564 + L1MB2 LINE L1 5675 6018 -153 965 59 8 0 chr4 70146 70264 -184218398 - AluY SINE Alu -43 268 150 695 137 8 8 chr4 70274 70405 -184218257 - L1PA13 LINE L1 -4 6159 6029 1116 281 37 50 chr4 70517 70621 -184218041 + L1 LINE L1 4519 4623 -1523 2130 110 7 3 chr4 70621 70911 -184217751 - AluSg SINE Alu -17 293 3 1116 281 37 50 chr4 70911 71380 -184217282 + L1 LINE L1 4623 5084 -1062 1093 109 14 0 chr4 71380 71527 -184217135 - AluSg/x SINE Alu -16 294 146 1917 89 19 19 chr4 71528 71785 -184216877 - AluY SINE Alu -54 257 1 758 314 26 74 chr4 71855 72317 -184216345 + L1M3a LINE L1 118 557 -5398 1196 192 179 26 chr4 72522 72912 -184215750 + LTR7 LTR ERV1 1 450 0 2029 194 49 25 chr4 72912 73360 -184215302 + HERVH LTR ERV1 1 459 -7254 11594 150 9 41 chr4 73418 74241 -184214421 + HERVH LTR ERV1 800 1648 -6065 2985 13 0 0 chr4 74241 74559 -184214103 - AluYb8 SINE Alu 0 318 1 11594 150 9 41 chr4 74559 75546 -184213116 + HERVH LTR ERV1 1648 2534 -5179 2459 76 0 0 chr4 75546 75837 -184212825 + AluY SINE Alu 1 291 -20 11594 150 9 41 chr4 75837 76125 -184212537 + HERVH LTR ERV1 2534 2830 -4883 4130 135 2 5 chr4 76125 76764 -184211898 + HERVH LTR ERV1 3357 3993 -3720 2998 149 15 20 chr4 76747 77298 -184211364 + HERVH LTR ERV1 3993 5286 -1805 * 4460 125 40 38 chr4 77296 78247 -184210415 + pTR5 LTR ERV1 741 2025 -413 375 235 10 0 chr4 78247 78345 -184210317 + LTR30 LTR ERV1 544 642 -80 1546 90 5 9 chr4 78348 78571 -184210091 + pTR5 LTR ERV1 172 393 -2045 * 20375 150 5 3 chr4 78570 81821 -184206841 + HERVH LTR ERV1 4458 7713 0 1207 193 185 28 chr4 81821 82210 -184206452 + LTR7 LTR ERV1 1 450 0 3166 232 59 46 chr4 82338 82571 -184206091 + L1MA10 LINE L1 4112 4340 -1840 633 248 0 0 chr4 82571 82704 -184205958 - FLAM_C SINE Alu 0 133 1 3166 232 59 46 chr4 82704 83708 -184204954 + L1MA10 LINE L1 4340 5366 -814 1923 179 137 103 chr4 83721 84125 -184204537 + L1MA10 LINE L1 5529 5918 -416 821 126 0 22 chr4 84125 84260 -184204402 - FLAM_C SINE Alu 0 133 2 1923 179 137 103 chr4 84260 84449 -184204213 + L1MA10 LINE L1 5918 6099 -235 2335 101 0 0 chr4 84449 84747 -184203915 - AluSg SINE Alu -12 298 1 1923 179 137 103 chr4 84747 84902 -184203760 + L1MA10 LINE L1 6099 6304 -30 359 243 52 62 chr4 84933 85037 -184203625 + MER6B DNA MER2_type 1 104 -761 9620 23 2 245 chr4 85037 86852 -184201810 - SVA Other Other -1 1385 13 359 243 52 62 chr4 86852 86876 -184201786 + MER6B DNA MER2_type 104 127 -738 1693 102 0 5 chr4 86876 87092 -184201570 - AluSg SINE Alu -95 215 1 359 243 52 62 chr4 87092 87172 -184201490 + MER6B DNA MER2_type 127 208 -2 1202 144 5 0 chr4 87384 87572 -184201090 - MER30B DNA MER1_type -1 189 1 3685 126 14 14 chr4 88474 89045 -184199617 - LTR10C LTR ERV1 -20 571 1 3579 58 74 0 chr4 91540 91987 -184196675 - LTR2B LTR ERV1 0 490 11 2317 123 60 13 chr4 92095 92526 -184196136 - LTR56 LTR ERV1 -5 433 9 2124 106 0 26 chr4 92847 93150 -184195512 - AluY SINE Alu -16 295 1 1392 229 50 48 chr4 93305 93952 -184194710 - MER67C LTR ERV1 -5 705 1 307 290 99 34 chr4 94718 94980 -184193682 - MER21B LTR ERV1 -169 694 416 390 266 8 16 chr4 95012 95136 -184193526 + MER93a LTR ERV1 244 366 -36 23 0 0 0 chr4 95978 96001 -184192661 + AT_rich Low_complexity Low_complexity 1 23 0 883 247 62 43 chr4 96074 96192 -184192470 - MER33 DNA MER1_type -2275 310 196 1955 132 16 3 chr4 96192 96495 -184192167 + AluSc SINE Alu 1 307 -2 883 247 62 43 chr4 96495 96680 -184191982 - MER33 DNA MER1_type -2389 196 1 723 205 49 33 chr4 96883 97088 -184191574 - MER61D LTR ERV1 -18 732 338 3512 131 38 2 chr4 97747 98322 -184190340 - MER51C LTR ERV1 0 640 3 1060 291 131 7 chr4 98506 98925 -184189737 - MLT1H LTR MaLR -72 477 7 2454 63 7 3 chr4 99575 99874 -184188788 + AluY SINE Alu 1 300 -11 592 249 51 51 chr4 99897 100114 -184188548 - MER52-int LTR ERV1 -1818 5273 5057 597 108 24 0 chr4 100116 100199 -184188463 + AluS SINE Alu 5 89 -223 2071 131 3 3 chr4 100403 100708 -184187954 - AluSc SINE Alu -4 305 1 943 149 90 11 chr4 102084 102272 -184186390 + L1MA3 LINE L1 6098 6300 -5 21 0 0 0 chr4 102528 102549 -184186113 + AT_rich Low_complexity Low_complexity 1 21 0 393 344 33 44 chr4 106012 106378 -184182284 + L1MB2 LINE L1 418 779 -5524 2038 109 0 4 chr4 106755 107030 -184181632 + AluY SINE Alu 4 277 -34 2180 107 0 3 chr4 107067 107356 -184181306 + AluSc SINE Alu 6 293 -16 43 35 0 0 chr4 107442 107499 -184181163 + AT_rich Low_complexity Low_complexity 1 57 0 764 314 64 17 chr4 107517 107560 -184181102 + L1MB2 LINE L1 1315 1355 -5029 2269 94 0 10 chr4 107560 107857 -184180805 + AluY SINE Alu 1 294 -17 764 314 64 17 chr4 107857 108329 -184180333 + L1MB2 LINE L1 1355 1854 -4530 446 257 72 86 chr4 108338 108527 -184180135 + L1MB2 LINE L1 1969 2159 -4223 2341 97 0 3 chr4 108527 108826 -184179836 + AluSc SINE Alu 1 298 -11 252 0 0 0 chr4 108826 108854 -184179808 + (TA)n Simple_repeat Simple_repeat 2 29 0 446 257 72 86 chr4 108854 109402 -184179260 + L1MB2 LINE L1 2158 2693 -3689 246 32 0 0 chr4 109402 109433 -184179229 + (TG)n Simple_repeat Simple_repeat 2 32 0 446 257 72 86 chr4 109433 109616 -184179046 + L1MB2 LINE L1 2693 2877 -3505 604 266 79 38 chr4 109620 109910 -184178752 + L1MB2 LINE L1 4785 5086 -1296 666 274 38 99 chr4 109914 110050 -184178612 + L1MB2 LINE L1 5912 6055 -352 2013 135 0 17 chr4 110050 110347 -184178315 + AluSx SINE Alu 1 292 -20 666 274 38 99 chr4 110347 110675 -184177987 + L1MB2 LINE L1 6055 6401 -6 509 101 0 79 chr4 110675 110764 -184177898 + L1PA7 LINE L1 6073 6154 0 666 274 38 99 chr4 110764 110788 -184177874 + L1MB2 LINE L1 6401 6370 -37 2090 109 39 0 chr4 110788 111072 -184177590 + AluSg SINE Alu 1 295 -15 666 274 38 99 chr4 111072 111107 -184177555 + L1MB2 LINE L1 6369 6405 -2 21 0 0 0 chr4 111409 111430 -184177232 + AT_rich Low_complexity Low_complexity 1 21 0 707 250 16 21 chr4 111430 111618 -184177044 - L1 LINE L1 -2055 4091 3905 1784 158 27 10 chr4 111624 111921 -184176741 + AluSx SINE Alu 1 302 -10 3217 227 45 17 chr4 111922 111991 -184176671 + L1MB2 LINE L1 4410 4476 -1670 1975 146 17 0 chr4 111991 112286 -184176376 + AluSg SINE Alu 2 301 -9 3217 227 45 17 chr4 112286 113113 -184175549 + L1MB2 LINE L1 4476 5331 -815 4823 180 36 2 chr4 113123 113983 -184174679 + L1P LINE L1 11 899 -5247 17536 56 10 0 chr4 113991 114820 -184173842 + L1PA5 LINE L1 3243 4062 -2092 2147 102 0 7 chr4 114820 115115 -184173547 - AluY SINE Alu -16 295 3 17536 56 10 0 chr4 115115 117204 -184171458 + L1PA5 LINE L1 4062 6153 -1 684 262 98 6 chr4 117206 117521 -184171141 + L1MB2 LINE L1 5820 6167 -4 22 0 0 0 chr4 117768 117790 -184170872 + AT_rich Low_complexity Low_complexity 1 22 0 904 328 88 24 chr4 118339 118757 -184169905 + L1M3a LINE L1 10 454 -5501 333 314 29 0 chr4 118765 118867 -184169795 + L1M3a LINE L1 640 744 -5211 2041 285 43 31 chr4 118947 119717 -184168945 + L1M3a LINE L1 344 1004 -4951 2023 111 7 0 chr4 119719 119989 -184168673 + AluSc SINE Alu 3 274 -35 227 258 269 0 chr4 120348 120441 -184168221 - MER5A DNA MER1_type -16 173 56 2253 107 0 0 chr4 120512 120812 -184167850 + AluSg SINE Alu 1 300 -10 2107 125 0 3 chr4 120842 121138 -184167524 + AluSp SINE Alu 1 295 -18 570 125 42 0 chr4 121650 121746 -184166916 + AluSg/x SINE Alu 213 312 0 2956 246 43 22 chr4 121754 122087 -184166575 + L1MB2 LINE L1 5278 5602 -569 1630 204 3 0 chr4 122087 122371 -184166291 + AluJb SINE Alu 3 287 -25 2956 246 43 22 chr4 122371 122910 -184165752 + L1MB2 LINE L1 5602 6169 -2 230 291 9 45 chr4 124166 124240 -184164422 + L1MB2 LINE L1 4882 4952 -1194 2301 78 17 10 chr4 124240 124536 -184164126 + AluSx SINE Alu 1 298 -14 230 291 9 45 chr4 124536 124571 -184164091 + L1MB2 LINE L1 4952 4987 -1159 947 232 41 50 chr4 124592 124781 -184163881 + L1MB2 LINE L1 5664 5850 -321 414 234 15 102 chr4 124781 124918 -184163744 + FLAM_C SINE Alu 1 125 -8 947 232 41 50 chr4 124918 125069 -184163593 + L1MB2 LINE L1 5850 6001 -170 342 245 103 73 chr4 125122 125355 -184163307 - TAR1 Satellite telomeric -1847 264 25 * 1244 223 36 22 chr4 125217 125671 -184162991 - LTR60 LTR ERV1 -41 545 1 2036 78 82 3 chr4 125770 126052 -184162610 + AluY SINE Alu 2 305 -6 660 313 56 47 chr4 126207 126651 -184162011 - LTR60-int LTR ERV1 -314 6891 6444 2282 76 3 0 chr4 128109 128400 -184160262 - AluY SINE Alu -19 292 1 2207 110 0 3 chr4 128404 128712 -184159950 - AluSg SINE Alu -3 307 1 249 288 40 56 chr4 129693 129818 -184158844 - MER93b LTR ERV1 -36 337 215 211 333 200 22 chr4 130011 130146 -184158516 + MER5A DNA MER1_type 31 189 0 323 237 131 81 chr4 130869 130947 -184157715 - MER6B DNA MER2_type -656 209 136 2128 109 13 3 chr4 130947 131249 -184157413 + AluSq SINE Alu 1 305 -8 323 237 131 81 chr4 131249 131368 -184157294 - MER6B DNA MER2_type -729 136 2 2292 164 104 101 chr4 131404 132156 -184156506 - L1MA9 LINE L1 -30 6170 5417 2908 216 67 89 chr4 132165 132290 -184156372 - L1MA9 LINE L1 -779 5255 5129 1792 127 80 4 chr4 132290 132566 -184156096 - AluSc SINE Alu -12 297 1 195 42 0 0 chr4 132566 132590 -184156072 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1713 140 4 4 chr4 132590 132840 -184155822 - AluSp SINE Alu -28 285 36 2908 216 67 89 chr4 132840 133126 -184155536 - L1MA9 LINE L1 -903 5131 4840 2300 73 7 3 chr4 133126 133414 -184155248 + AluY SINE Alu 2 290 -21 2908 216 67 89 chr4 133414 134072 -184154590 - L1MA9 LINE L1 -1194 4840 4216 675 241 0 0 chr4 134072 134205 -184154457 + FLAM_C SINE Alu 1 133 0 2908 216 67 89 chr4 134205 134463 -184154199 - L1MA9 LINE L1 -1818 4216 3954 934 294 64 82 chr4 134492 134857 -184153805 - L1MA9 LINE L1 -5106 849 504 2106 96 3 45 chr4 134857 135025 -184153637 - AluSg SINE Alu -10 300 149 2217 74 42 0 chr4 135025 135308 -184153354 - AluY SINE Alu -15 296 2 2106 96 3 45 chr4 135308 135452 -184153210 - AluSg SINE Alu -161 149 1 934 294 64 82 chr4 135452 135825 -184152837 - L1MA9 LINE L1 -5451 504 125 449 211 48 160 chr4 135823 136065 -184152597 - L1MB2 LINE L1 -180 5991 5790 * 2373 69 16 13 chr4 136065 136370 -184152292 - AluY SINE Alu -5 306 1 449 211 48 160 chr4 136370 136440 -184152222 - L1MB2 LINE L1 -381 5790 5714 943 195 6 6 chr4 136441 136615 -184152047 + MSTA LTR MaLR 1 174 -254 973 107 0 0 chr4 137187 137318 -184151344 + AluSg/x SINE Alu 178 308 -4 247 239 56 80 chr4 137343 137556 -184151106 - L1M1 LINE L1 -4015 2367 2160 2333 76 0 10 chr4 137573 137875 -184150787 + AluY SINE Alu 1 299 -12 2259 115 3 0 chr4 137878 138183 -184150479 + AluSp SINE Alu 1 306 -7 2102 173 78 111 chr4 138184 138330 -184150332 + L1MA9 LINE L1 5606 5755 -557 249 133 0 0 chr4 138330 138375 -184150287 + LTR66 LTR ERVL 394 438 -172 2102 173 78 111 chr4 138375 138888 -184149774 + L1MA9 LINE L1 5755 6286 -26 503 188 99 35 chr4 138919 139122 -184149540 + MER6 DNA MER2_type -65 864 -1 1295 82 54 22 chr4 139381 139464 -184149198 - MER30B DNA MER1_type 0 190 111 1903 101 4 0 chr4 139464 139712 -184148950 - AluSp SINE Alu -8 305 57 1295 82 54 22 chr4 139712 139812 -184148850 - MER30B DNA MER1_type -79 111 1 2463 82 0 0 chr4 140395 140701 -184147961 - AluSc SINE Alu -3 306 1 23 0 0 0 chr4 140883 140906 -184147756 + AT_rich Low_complexity Low_complexity 1 23 0 2566 65 0 0 chr4 141463 141771 -184146891 - AluY SINE Alu -3 308 1 211 324 14 14 chr4 142652 142723 -184145939 - MER5A DNA MER1_type -88 101 31 2278 75 27 7 chr4 143853 144147 -184144515 + AluSg SINE Alu 1 300 -10 2466 144 64 9 chr4 144174 144596 -184144066 - LTR56 LTR ERV1 0 445 1 2091 119 20 0 chr4 145622 145924 -184142738 + AluSc SINE Alu 1 308 -1 2109 142 0 0 chr4 145929 146231 -184142431 + AluSg SINE Alu 1 302 -8 784 266 55 48 chr4 146404 146940 -184141722 - L1M1 LINE L1 -4484 1898 1281 2431 82 3 3 chr4 147324 147628 -184141034 + AluY SINE Alu 1 304 -7 255 313 57 52 chr4 147824 148016 -184140646 - L1M1 LINE L1 -5613 690 498 2321 108 0 0 chr4 151642 151949 -184136713 + AluSp SINE Alu 1 307 -6 984 139 36 0 chr4 152833 152998 -184135664 - L1MA3 LINE L1 -8 6297 6127 2215 108 0 0 chr4 154345 154640 -184134022 - AluY SINE Alu -16 295 1 486 245 141 12 chr4 155042 155205 -184133457 - MIR SINE MIR -75 187 4 2392 72 0 3 chr4 155247 155540 -184133122 - AluY SINE Alu -19 292 1 2134 119 13 13 chr4 155643 155946 -184132716 + AluSq SINE Alu 3 305 -8 422 290 108 42 chr4 155948 156108 -184132554 + L1M3c LINE L1 1267 1415 -4726 2213 99 3 49 chr4 156108 156432 -184132230 + AluSc SINE Alu 1 309 0 422 290 108 42 chr4 156432 156605 -184132057 + L1M3c LINE L1 1415 1622 -4519 437 198 40 24 chr4 156745 156871 -184131791 + MER67C LTR ERV1 10 137 -573 1161 254 82 30 chr4 156874 157505 -184131157 - L1 LINE L1 -2963 3183 2363 2010 119 6 50 chr4 157505 157845 -184130817 - AluSx SINE Alu 0 312 1 1161 254 82 30 chr4 157845 158037 -184130625 - L1 LINE L1 -3783 2363 2182 464 280 128 29 chr4 158039 158282 -184130380 - MSTD LTR MaLR 0 396 191 1844 127 4 4 chr4 158290 158565 -184130097 + AluSg SINE Alu 1 275 -35 366 248 67 0 chr4 158667 158772 -184129890 + L1MB2 LINE L1 5893 6004 -167 238 189 79 87 chr4 158848 158975 -184129687 - TAR1 Satellite telomeric -1926 185 60 * 1947 213 72 44 chr4 158868 159409 -184129253 - LTR60 LTR ERV1 -30 556 1 653 327 40 32 chr4 159617 159993 -184128669 - LTR60-int LTR ERV1 -281 6924 6546 251 215 15 15 chr4 160237 160302 -184128360 - LTR60-int LTR ERV1 -476 6509 6445 367 360 56 27 chr4 162058 162453 -184126209 - HERV30 LTR ERV1 -2011 5862 4698 2370 78 0 0 chr4 162691 163008 -184125654 + AluY SINE Alu 1 317 0 459 71 0 100 chr4 163217 163287 -184125375 - Alu SINE Alu -254 64 2 768 206 41 18 chr4 163355 163525 -184125137 - L1 LINE L1 -2055 4091 3918 2805 218 115 15 chr4 163555 164138 -184124524 + L1 LINE L1 4408 5106 -1040 2364 93 0 0 chr4 164138 164438 -184124224 + AluSg SINE Alu 1 300 -10 2805 218 115 15 chr4 164438 164712 -184123950 + L1 LINE L1 5106 5351 -795 2344 111 0 0 chr4 164923 165230 -184123432 - AluSg SINE Alu -3 307 1 2147 120 3 0 chr4 165460 165761 -184122901 - AluSg SINE Alu -8 302 1 1039 217 80 35 chr4 165877 166326 -184122336 - L1MA8 LINE L1 -4 6287 5748 2133 110 7 27 chr4 166460 166760 -184121902 + AluSq SINE Alu 1 294 -19 304 250 115 0 chr4 166760 166856 -184121806 - MIR SINE MIR -75 187 81 325 327 73 14 chr4 167101 167321 -184121341 - HAL1 LINE L1 -295 2212 1980 286 290 9 9 chr4 167381 167488 -184121174 + HERVFH21 LTR ERV1 3967 4073 -2456 851 113 0 0 chr4 167488 167612 -184121050 - AluSg/x SINE Alu -4 308 185 2120 105 0 51 chr4 167744 168057 -184120605 - AluSx SINE Alu -14 298 2 883 209 37 81 chr4 168091 168345 -184120317 + L1MA9 LINE L1 5002 5235 -911 2156 116 14 0 chr4 168345 168637 -184120025 + AluY SINE Alu 1 296 -15 883 209 37 81 chr4 168637 168764 -184119898 + L1MA9 LINE L1 5235 5366 -780 2162 178 84 115 chr4 168767 168850 -184119812 + L1MA9 LINE L1 5518 5602 -710 2450 70 0 0 chr4 168850 169149 -184119513 + AluY SINE Alu 1 299 -12 2259 115 3 0 chr4 169152 169457 -184119205 + AluSp SINE Alu 1 306 -7 2162 178 84 115 chr4 169457 169604 -184119058 + L1MA9 LINE L1 5604 5754 -558 249 133 0 0 chr4 169604 169649 -184119013 + LTR66 LTR ERVL 394 438 -172 2162 178 84 115 chr4 169649 170162 -184118500 + L1MA9 LINE L1 5754 6286 -26 311 185 31 31 chr4 170193 170258 -184118404 - MER6 DNA MER2_type 0 865 801 1108 304 43 45 chr4 170388 170560 -184118102 - L1M4 LINE L1 -1954 4192 4021 2489 82 0 0 chr4 170560 170863 -184117799 - AluSg SINE Alu -7 303 1 1108 304 43 45 chr4 170863 171130 -184117532 - L1M4 LINE L1 -2125 4021 3752 2269 97 3 7 chr4 171130 171430 -184117232 - AluSc SINE Alu -10 299 1 1108 304 43 45 chr4 171430 171680 -184116982 - L1M4 LINE L1 -2394 3752 3503 335 309 133 21 chr4 171753 171941 -184116721 - L1M4 LINE L1 -1194 4952 4744 1619 111 0 0 chr4 171979 172195 -184116467 - AluSq SINE Alu -12 301 86 635 146 89 8 chr4 172299 172422 -184116240 + LTR23 LTR ERV1 300 432 -5 183 211 58 19 chr4 173311 173363 -184115299 - L2 LINE L2 -85 3228 3175 26 0 0 0 chr4 174117 174143 -184114519 + AT_rich Low_complexity Low_complexity 1 26 0 207 0 0 0 chr4 174195 174218 -184114444 + (T)n Simple_repeat Simple_repeat 1 23 0 2200 110 10 0 chr4 174537 174836 -184113826 - AluSg SINE Alu -6 304 3 221 340 88 25 chr4 175202 175361 -184113301 - MER5B DNA MER1_type -1 177 9 7893 82 16 19 chr4 175864 176874 -184111788 + LTR13 LTR ERVK 1 1007 0 456 67 0 0 chr4 176877 176937 -184111725 + (TATG)n Simple_repeat Simple_repeat 2 61 0 2141 106 3 3 chr4 176939 177222 -184111440 - AluSq SINE Alu -30 283 1 6565 220 24 15 chr4 177233 177269 -184111393 - L1PA12 LINE L1 -4329 3255 3221 2695 151 37 31 chr4 177269 177758 -184110904 - LTR22B LTR ERVK 0 492 1 6565 220 24 15 chr4 177758 179991 -184108671 - L1PA12 LINE L1 -4363 3221 178 1766 250 144 5 chr4 180151 180762 -184107900 - MER67C LTR ERV1 -14 696 1 366 273 76 73 chr4 181437 181781 -184106881 - MER21B LTR ERV1 -75 856 416 262 323 8 16 chr4 181813 181937 -184106725 + MER93b LTR ERV1 215 337 -36 335 231 0 23 chr4 182771 182901 -184105761 + (CA)n Simple_repeat Simple_repeat 2 128 0 597 240 190 14 chr4 184114 184335 -184104327 + MIR SINE MIR 2 261 -1 237 221 0 0 chr4 185232 185300 -184103362 + (TCCA)n Simple_repeat Simple_repeat 3 70 0 317 254 164 25 chr4 185728 185850 -184102812 + MIR3 SINE MIR 7 145 -63 2023 139 0 0 chr4 186267 186572 -184102090 - AluSx SINE Alu 0 305 1 22 56 0 0 chr4 186572 186608 -184102054 + AT_rich Low_complexity Low_complexity 1 36 0 23 68 0 0 chr4 186767 186811 -184101851 + AT_rich Low_complexity Low_complexity 1 44 0 1959 100 8 0 chr4 187039 187298 -184101364 - AluSq SINE Alu -52 261 1 21 36 0 0 chr4 187298 187326 -184101336 + AT_rich Low_complexity Low_complexity 1 28 0 231 108 27 0 chr4 187384 187421 -184101241 + Alu SINE Alu 61 98 -204 496 95 0 0 chr4 187522 187585 -184101077 - AluJ/FLAM SINE Alu -248 64 2 476 165 10 39 chr4 187823 187926 -184100736 - SVA Other Other -704 682 583 2490 76 3 0 chr4 188576 188878 -184099784 - AluSp SINE Alu -10 303 1 2423 91 0 3 chr4 188878 189187 -184099475 - AluY SINE Alu -2 309 2 2091 120 6 35 chr4 189790 190107 -184098555 - AluSq SINE Alu -5 308 1 2014 123 41 3 chr4 190470 190762 -184097900 + AluSg SINE Alu 1 303 -7 265 256 174 25 chr4 191016 191137 -184097525 - MIR3 SINE MIR -63 145 7 2331 107 0 0 chr4 191184 191484 -184097178 + AluSc SINE Alu 1 300 -9 333 162 0 0 chr4 191778 191846 -184096816 + (TGGA)n Simple_repeat Simple_repeat 3 70 0 1161 257 75 32 chr4 192845 193482 -184095180 + L2 LINE L2 2624 3277 -36 2004 123 77 40 chr4 193780 194131 -184094531 + THE1B LTR MaLR 1 364 0 7838 108 12 2 chr4 194131 195208 -184093454 + THE1B-int LTR MaLR 1 1088 -492 2339 176 18 17 chr4 195205 195843 -184092819 - L1P4 LINE L1 -486 5680 5044 * 394 192 0 19 chr4 195878 195982 -184092680 + CT-rich Low_complexity Low_complexity 2 103 0 1156 248 6 58 chr4 196110 196280 -184092382 - AluJb SINE Alu -6 296 148 2252 116 0 0 chr4 196280 196572 -184092090 - AluSg SINE Alu -18 292 1 1156 248 6 58 chr4 196572 196712 -184091950 - AluJb SINE Alu -154 148 2 2432 83 3 0 chr4 196929 197229 -184091433 - AluSp SINE Alu -11 302 2 2265 92 7 13 chr4 197239 197545 -184091117 - AluY SINE Alu -7 304 1 195 218 55 0 chr4 199137 199192 -184089470 + MER5A DNA MER1_type 56 113 -76 2412 86 0 3 chr4 199385 199689 -184088973 + AluY SINE Alu 1 303 -8 299 226 0 47 chr4 199916 200022 -184088640 + L1ME3A LINE L1 6068 6168 -2 373 98 0 33 chr4 200107 200168 -184088494 + Alu SINE Alu 237 295 -7 430 240 23 76 chr4 200581 200752 -184087910 - MER5B DNA MER1_type -16 162 1 3677 122 48 2 chr4 201713 202288 -184086374 + MER51C LTR ERV1 1 640 0 662 228 13 27 chr4 202998 203147 -184085515 + MER61D LTR ERV1 338 484 -17 966 221 100 7 chr4 203350 203630 -184085032 + MER33 DNA MER1_type 5 310 -14 353 266 80 62 chr4 204518 204792 -184083870 + MER21A LTR ERV1 578 856 -75 237 81 27 0 chr4 205551 205588 -184083074 + MER67C LTR ERV1 69 106 -604 1770 100 4 0 chr4 205589 205828 -184082834 - AluSx SINE Alu -11 301 62 4750 25 7 4 chr4 205832 206388 -184082274 - LTR6B LTR ERV1 0 558 1 420 121 0 0 chr4 206388 206446 -184082216 - AluSx SINE Alu -250 61 4 1264 239 48 5 chr4 206450 206974 -184081688 + MER67C LTR ERV1 101 706 -4 7520 39 11 0 chr4 207350 208460 -184080202 - L1PA5 LINE L1 -7 6147 5035 740 211 45 0 chr4 208579 208735 -184079927 + LTR56 LTR ERV1 1 163 -282 1223 124 43 0 chr4 208739 208924 -184079738 - AluY SINE Alu 0 311 119 578 208 9 123 chr4 258925 259137 -184029525 - AluJb SINE Alu -115 197 10 652 265 69 26 chr4 259146 259493 -184029169 + L1 LINE L1 4308 4669 -1477 2135 61 18 4 chr4 259506 259813 -184028849 + AluY SINE Alu 1 311 0 1033 198 52 71 chr4 259831 260155 -184028507 + L1MA9 LINE L1 5969 6286 -26 369 236 133 15 chr4 260182 260363 -184028299 + MER6 DNA MER2_type -65 861 -4 200 216 0 0 chr4 260512 260549 -184028113 - MIR SINE MIR -17 245 209 576 134 0 0 chr4 260602 260684 -184027978 - MER30B DNA MER1_type 0 190 109 2086 93 10 10 chr4 260685 260987 -184027675 + AluSc SINE Alu 1 302 -7 1623 216 74 13 chr4 260990 261577 -184027085 - MER67C LTR ERV1 -31 679 1 350 295 79 44 chr4 262261 262622 -184026040 - MER21B LTR ERV1 -75 856 416 346 276 48 28 chr4 262654 262799 -184025863 + MER93a LTR ERV1 244 391 -11 1947 106 34 0 chr4 263500 263792 -184024870 - AluSq SINE Alu -11 302 1 216 254 0 0 chr4 263894 263953 -184024709 + (CACG)n Simple_repeat Simple_repeat 1 59 0 431 218 92 0 chr4 264070 264212 -184024450 - MER33 DNA MER1_type -14 349 195 229 269 0 0 chr4 264213 264265 -184024397 + LTR30 LTR ERV1 1 52 -670 808 136 8 15 chr4 264265 264397 -184024265 + LTR12 LTR ERV1 53 183 -531 279 253 30 20 chr4 264521 264620 -184024042 + LTR30 LTR ERV1 544 643 -79 678 122 20 0 chr4 264622 264720 -184023942 + LTR12 LTR ERV1 615 714 0 2374 72 0 3 chr4 264742 265047 -184023615 + AluY SINE Alu 2 305 -6 451 287 26 0 chr4 265066 265181 -184023481 - MER33 DNA MER1_type -206 118 1 693 191 52 111 chr4 265385 265545 -184023117 - MER61D LTR ERV1 -17 732 564 2048 96 7 13 chr4 265545 265846 -184022816 - AluSq SINE Alu -3 310 12 693 191 52 111 chr4 265846 265892 -184022770 - MER61D LTR ERV1 -185 564 340 3807 132 20 0 chr4 266567 267155 -184021507 - MER51C LTR ERV1 0 640 1 1219 275 123 24 chr4 267291 267753 -184020909 - MLT1H LTR MaLR 0 549 34 2006 123 3 3 chr4 267753 268054 -184020608 - AluSq SINE Alu -12 301 1 1219 275 123 24 chr4 268054 268085 -184020577 - MLT1H LTR MaLR -515 34 7 4869 194 23 6 chr4 268172 269607 -184019055 + L1PA16 LINE L1 4705 6162 -4 302 255 114 46 chr4 271116 271256 -184017406 + L1ME1 LINE L1 1087 1216 -5180 195 42 0 0 chr4 271256 271280 -184017382 + (TA)n Simple_repeat Simple_repeat 2 25 0 302 255 114 46 chr4 271280 271402 -184017260 + L1ME1 LINE L1 1216 1367 -5029 1455 232 81 45 chr4 271458 271728 -184016934 + L1ME1 LINE L1 2946 3205 -3010 279 0 0 0 chr4 271728 271759 -184016903 + (CA)n Simple_repeat Simple_repeat 2 32 0 1455 232 81 45 chr4 271759 272129 -184016533 + L1ME1 LINE L1 3205 3609 -2606 2702 216 77 64 chr4 272139 272406 -184016256 + L1ME1 LINE L1 5108 5370 -865 3412 148 60 5 chr4 272406 273008 -184015654 - MER41B LTR ERV1 0 635 1 2702 216 77 64 chr4 273008 273807 -184014855 + L1ME1 LINE L1 5370 6185 -50 629 189 9 0 chr4 273807 273918 -184014744 - FRAM SINE Alu -19 157 46 339 149 0 1 chr4 273936 274075 -184014587 + Alu SINE Alu 244 372 0 1674 153 13 13 chr4 274271 274571 -184014091 - AluSx SINE Alu -12 300 1 243 319 14 0 chr4 274884 274953 -184013709 - L2 LINE L2 -82 3190 3121 1623 203 56 43 chr4 274986 275429 -184013233 + LTR2 LTR ERV1 1 449 0 1522 147 25 81 chr4 276331 276700 -184011962 - MER4A LTR ERV1 -2 662 256 464 133 44 11 chr4 276695 276785 -184011877 - MER4A LTR ERV1 -566 98 6 * 266 241 169 96 chr4 276981 277230 -184011432 + L2 LINE L2 2630 2896 -418 202 188 31 115 chr4 277679 277775 -184010887 - MIR SINE MIR -82 126 39 802 235 270 27 chr4 278336 279077 -184009585 - L2 LINE L2 -5 3308 2364 216 246 18 0 chr4 279139 279196 -184009466 + L2 LINE L2 2921 2978 -294 279 246 114 18 chr4 279421 279535 -184009127 + MIR SINE MIR 18 142 -66 21 0 0 0 chr4 280052 280073 -184008589 + GC_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 280357 280379 -184008283 + GC_rich Low_complexity Low_complexity 1 22 0 40 59 0 0 chr4 283342 283410 -184005252 + AT_rich Low_complexity Low_complexity 1 68 0 390 268 117 0 chr4 283613 283738 -184004924 - MIR SINE MIR -63 145 24 522 243 185 14 chr4 283765 283987 -184004675 + MIR SINE MIR 2 261 -1 249 275 29 0 chr4 284876 284945 -184003717 + (TCCA)n Simple_repeat Simple_repeat 3 73 0 322 200 156 22 chr4 285402 285492 -184003170 + MIR SINE MIR 44 145 -63 2704 275 20 12 chr4 285713 286463 -184002199 + L1PA12 LINE L1 524 1279 -6302 1705 141 121 0 chr4 286463 286776 -184001886 - MER61C LTR ERV1 0 434 84 10541 125 22 22 chr4 286799 288253 -184000409 - MER61C-int LTR ERV1 -9 5208 3755 2029 83 0 4 chr4 288253 288507 -184000155 + AluY SINE Alu 41 293 -18 10541 125 22 22 chr4 288507 288547 -184000115 - MER61C-int LTR ERV1 -1462 3755 3716 2146 112 0 27 chr4 288547 288842 -183999820 + AluSg SINE Alu 1 287 -23 10541 125 22 22 chr4 288842 290480 -183998182 - MER61C-int LTR ERV1 -1501 3716 1971 1194 170 48 15 chr4 290458 290729 -183997933 - MER61C-int LTR ERV1 -3577 1640 1361 * 4143 142 81 62 chr4 290724 290856 -183997806 - MER61C-int LTR ERV1 -4004 1213 1085 2163 122 0 0 chr4 290856 291150 -183997512 + AluSc SINE Alu 1 294 -15 270 81 0 0 chr4 291150 291187 -183997475 + (TG)n Simple_repeat Simple_repeat 2 38 0 4143 142 81 62 chr4 291187 291401 -183997261 - MER61C-int LTR ERV1 -4132 1085 877 2023 130 20 0 chr4 291401 291693 -183996969 - AluSg SINE Alu -12 298 1 4143 142 81 62 chr4 291693 292509 -183996153 - MER61C-int LTR ERV1 -4340 877 4 1027 151 53 7 chr4 292517 292626 -183996036 - MER61C LTR ERV1 -6 419 317 204 40 0 0 chr4 292626 292651 -183996011 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1027 151 53 7 chr4 292651 292840 -183995822 - MER61C LTR ERV1 -108 317 84 248 172 0 52 chr4 292855 292913 -183995749 + L1PA12 LINE L1 736 790 -6791 * 1257 196 39 15 chr4 292894 293198 -183995464 + L1PA12 LINE L1 1358 2460 -5124 1474 182 56 25 chr4 293530 293888 -183994774 + THE1C LTR MaLR 1 369 -6 8897 145 62 3 chr4 293893 295385 -183993277 + THE1C-int LTR MaLR 1 1580 0 518 185 23 39 chr4 295385 295515 -183993147 + THE1C LTR MaLR 1 128 -247 1706 145 0 0 chr4 295515 295756 -183992906 - AluSg SINE Alu -69 241 1 394 159 0 0 chr4 295756 295825 -183992837 + MSTA LTR MaLR 360 428 0 239 218 0 64 chr4 296033 296111 -183992551 + T-rich Low_complexity Low_complexity 2 74 0 21 71 0 0 chr4 296184 296226 -183992436 + AT_rich Low_complexity Low_complexity 1 42 0 203 158 0 0 chr4 296508 296546 -183992116 + (CA)n Simple_repeat Simple_repeat 1 38 0 923 292 49 35 chr4 296566 297214 -183991448 + L1MB2 LINE L1 4539 5195 -951 1299 252 47 70 chr4 297301 297564 -183991098 + L1MB2 LINE L1 5341 5608 -563 1847 200 0 0 chr4 297564 297864 -183990798 + AluJb SINE Alu 12 311 -1 1299 252 47 70 chr4 297864 298214 -183990448 + L1MB2 LINE L1 5608 5940 -231 23 0 0 0 chr4 299213 299236 -183989426 + AT_rich Low_complexity Low_complexity 1 23 0 733 168 37 47 chr4 299759 299785 -183988877 + L1MA3 LINE L1 6118 6143 -162 2237 112 0 3 chr4 299785 300088 -183988574 + AluSg SINE Alu 1 302 -8 733 168 37 47 chr4 300088 300251 -183988411 + L1MA3 LINE L1 6143 6305 0 257 371 41 22 chr4 302161 302428 -183986234 + L1MB2 LINE L1 7 278 -5613 302 310 180 4 chr4 302803 303048 -183985614 + L1MB2 LINE L1 369 656 -5316 723 285 88 13 chr4 303048 303475 -183985187 + L1MB2 LINE L1 903 1513 -4638 348 313 125 6 chr4 303651 303827 -183984835 + L1MB2 LINE L1 1627 1823 -4149 464 274 78 32 chr4 303917 304136 -183984526 + L1MB2 LINE L1 1816 2044 -3928 2360 87 10 13 chr4 304152 304463 -183984199 - AluY SINE Alu -1 310 1 624 284 50 27 chr4 304646 304727 -183983935 + L1MB2 LINE L1 2204 2282 -3688 186 43 0 0 chr4 304727 304750 -183983912 + (TG)n Simple_repeat Simple_repeat 2 24 0 624 284 50 27 chr4 304750 305112 -183983550 + L1MB2 LINE L1 2282 2657 -3313 2349 107 3 3 chr4 305117 305427 -183983235 + AluSp SINE Alu 1 310 -3 463 289 63 14 chr4 305507 305791 -183982871 + L1MB2 LINE L1 4373 4670 -1300 918 278 72 11 chr4 305804 306246 -183982416 + L1MB2 LINE L1 5499 5967 -28 2690 43 3 6 chr4 306617 306966 -183981696 + L1PA8 LINE L1 5805 6152 -20 2026 83 72 10 chr4 306967 307334 -183981328 + LTR7 LTR ERV1 1 450 0 571 177 24 79 chr4 307354 307481 -183981181 - L1 LINE L1 -2085 4061 3943 2312 86 14 0 chr4 307481 307772 -183980890 + AluSp SINE Alu 1 295 -18 571 177 24 79 chr4 307772 307808 -183980854 - L1 LINE L1 -2203 3943 3907 1578 207 58 50 chr4 307823 308360 -183980302 + L1MB2 LINE L1 4400 4940 -1206 1084 266 62 23 chr4 308362 308808 -183979854 + L1MB2 LINE L1 5662 6130 -41 1890 118 93 0 chr4 308808 309088 -183979574 + AluSp SINE Alu 1 306 -7 1084 266 62 23 chr4 309088 309126 -183979536 + L1MB2 LINE L1 6130 6165 -6 2270 70 0 0 chr4 309493 309800 -183978862 + AluY SINE Alu 1 307 0 2342 267 76 30 chr4 309811 311420 -183977242 + L1MA3 LINE L1 357 1859 -4176 369 173 0 13 chr4 311492 311567 -183977095 + AluJo SINE Alu 61 134 -168 1594 211 0 14 chr4 311606 311891 -183976771 + AluJb SINE Alu 1 281 -31 258 213 0 0 chr4 312118 312179 -183976483 + L1MA3 LINE L1 1969 2029 -4006 933 283 92 17 chr4 312224 312581 -183976081 + MSTD LTR MaLR 1 384 -12 407 289 66 17 chr4 312591 312878 -183975784 + L1MA3 LINE L1 2071 2371 -3663 592 111 10 20 chr4 312878 312977 -183975685 + MER4A LTR ERV1 1 98 -566 1526 117 27 94 chr4 313026 313324 -183975338 + MER4A LTR ERV1 372 649 -15 392 235 138 18 chr4 313330 313547 -183975115 + L1MA3 LINE L1 2374 2616 -3418 1188 184 28 14 chr4 313556 313774 -183974888 - AluJb SINE Alu -91 221 1 733 264 69 39 chr4 313792 314158 -183974504 - MER21B LTR ERV1 -83 848 402 1063 246 110 25 chr4 314194 314696 -183973966 + MER92B LTR ERV1 46 402 -10 3309 217 64 5 chr4 316407 317165 -183971497 + L1MA3 LINE L1 3973 4793 -1241 1891 163 7 3 chr4 317165 317459 -183971203 + AluSx SINE Alu 1 295 -17 3309 217 64 5 chr4 317459 317590 -183971072 + L1MA3 LINE L1 4793 4915 -1119 287 104 0 21 chr4 317590 317638 -183971024 + LTR22B LTR ERVK 1 47 -445 1652 104 4 24 chr4 317648 317898 -183970764 + LTR22B LTR ERVK 248 492 0 5132 177 27 19 chr4 317901 319182 -183969480 + L1MA3 LINE L1 4913 6192 -1 26 0 0 0 chr4 319182 319208 -183969454 + AT_rich Low_complexity Low_complexity 1 26 0 263 350 45 29 chr4 319231 319474 -183969188 + L1MB2 LINE L1 35 281 -5610 1997 81 78 0 chr4 319641 319912 -183968750 + AluY SINE Alu 6 297 -14 443 305 85 20 chr4 319915 320115 -183968547 + L1MB2 LINE L1 4463 4675 -1295 899 270 38 15 chr4 320117 320458 -183968204 + L1MB2 LINE L1 5499 5847 -148 558 168 50 0 chr4 320493 320612 -183968050 - L1PA13 LINE L1 -2 6161 6037 1335 281 45 16 chr4 320752 321357 -183967305 + L1MB1 LINE L1 4535 5156 -990 1886 231 91 12 chr4 321448 321834 -183966828 + L1MB1 LINE L1 5283 5744 -424 2151 186 26 7 chr4 321834 322254 -183966408 - MSTA LTR MaLR 0 428 1 1886 231 91 12 chr4 322254 322524 -183966138 + L1MB1 LINE L1 5744 5991 -177 556 324 18 77 chr4 322522 322979 -183965683 + L1M3a LINE L1 125 554 -5401 * 306 226 0 0 chr4 323121 323183 -183965479 + MER6B DNA MER2_type 3 64 -212 572 181 0 0 chr4 323233 323327 -183965335 - AluS SINE Alu -217 96 3 477 228 58 92 chr4 323332 323447 -183965215 - L1 LINE L1 -1717 4317 4200 599 186 0 64 chr4 323447 323587 -183965075 + FLAM_C SINE Alu 1 131 -2 477 228 58 92 chr4 323587 323830 -183964832 - L1 LINE L1 -1834 4200 3971 328 291 0 18 chr4 323944 324054 -183964608 - L1 LINE L1 -5149 806 699 1418 102 0 11 chr4 324062 324248 -183964414 + AluSg/x SINE Alu 103 286 -24 23 0 0 0 chr4 324255 324278 -183964384 + AT_rich Low_complexity Low_complexity 1 23 0 2591 233 50 25 chr4 324315 325196 -183963466 + L1MA9 LINE L1 4464 5366 -780 1758 199 72 47 chr4 325202 325906 -183962756 + L1MA9 LINE L1 5521 6277 -35 420 230 110 31 chr4 325944 326135 -183962527 + MER6B DNA MER2_type 4 209 -1 1751 99 119 58 chr4 326365 326658 -183962004 + AluSx SINE Alu 1 311 -1 1106 123 0 64 chr4 326685 326888 -183961774 - MER30B DNA MER1_type 0 190 1 713 71 0 0 chr4 327091 327189 -183961473 + L1PA2 LINE L1 6057 6154 -1 181 174 92 184 chr4 329177 329286 -183959376 - MIR SINE MIR -9 253 155 195 244 0 0 chr4 330173 330214 -183958448 + L2 LINE L2 3191 3231 -82 2553 144 41 0 chr4 330943 331359 -183957303 - LTR56 LTR ERV1 -12 433 1 2064 211 145 21 chr4 331828 332455 -183956207 - MER67C LTR ERV1 -5 705 1 2311 67 3 24 chr4 332612 332910 -183955752 + AluY SINE Alu 1 292 -19 385 257 82 79 chr4 333446 333800 -183954862 - MER21A LTR ERV1 -75 856 502 315 298 8 16 chr4 333820 333944 -183954718 + MER93a LTR ERV1 244 366 -36 297 230 0 0 chr4 334761 334835 -183953827 + (CA)n Simple_repeat Simple_repeat 2 75 0 23 0 0 0 chr4 334951 334974 -183953688 + AT_rich Low_complexity Low_complexity 1 23 0 626 209 71 112 chr4 334977 335273 -183953389 - MER33 DNA MER1_type -40 284 1 739 205 32 30 chr4 335479 335687 -183952975 - MER61D LTR ERV1 -17 743 338 3504 129 51 5 chr4 336353 336926 -183951736 - MER51C LTR ERV1 0 640 2 940 175 30 0 chr4 336938 337104 -183951558 - MER67C LTR ERV1 -259 451 281 2548 63 0 3 chr4 337195 337498 -183951164 - AluY SINE Alu -9 302 1 43 112 0 0 chr4 338587 338784 -183949878 + AT_rich Low_complexity Low_complexity 1 197 0 291 242 0 61 chr4 339203 339302 -183949360 - MER67C LTR ERV1 -477 233 141 2223 113 0 0 chr4 340035 340500 -183948162 - AluSg SINE Alu 0 465 1 725 287 85 7 chr4 340558 340851 -183947811 - MER21B LTR ERV1 -125 738 423 2421 97 0 3 chr4 341287 341595 -183947067 - AluSq SINE Alu -6 307 1 1901 121 3 25 chr4 341895 342177 -183946485 + AluSq SINE Alu 28 303 -10 347 214 256 0 chr4 342883 343005 -183945657 + MIR SINE MIR 32 179 -57 2218 96 4 0 chr4 343214 343535 -183945127 + AluSp SINE Alu 3 324 0 456 283 65 27 chr4 344409 344593 -183944069 - MARNA DNA Mariner -196 390 200 29098 74 8 67 chr4 345012 346201 -183942461 + L1P LINE L1 11 1267 -4879 5550 153 20 17 chr4 346201 347151 -183941511 + LTR5 LTR ERVK 17 969 0 29098 74 8 67 chr4 347151 350294 -183938368 + L1P LINE L1 1267 4092 -2054 182 319 103 69 chr4 350557 350789 -183937873 + MIR SINE MIR 14 253 -9 6393 93 4 15 chr4 351866 352357 -183936305 + L1PA14 LINE L1 4872 5367 -794 2383 95 0 0 chr4 352357 352661 -183936001 + AluY SINE Alu 2 305 -6 6393 93 4 15 chr4 352661 353464 -183935198 + L1PA14 LINE L1 5367 6161 0 9261 58 4 2 chr4 355794 357735 -183930927 - L1PA5 LINE L1 0 6154 4207 201 132 0 0 chr4 359224 359262 -183929400 + (GA)n Simple_repeat Simple_repeat 1 38 0 23 0 0 0 chr4 360515 360538 -183928124 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr4 360680 360700 -183927962 + (CAG)n Simple_repeat Simple_repeat 3 22 0 272 304 22 0 chr4 360869 360961 -183927701 - MIR SINE MIR -60 148 55 890 285 14 0 chr4 361684 361905 -183926757 - MER58A DNA MER1_type 0 224 1 282 74 56 0 chr4 362033 362087 -183926575 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 694 303 51 63 chr4 363707 364119 -183924543 - MLT1I LTR MaLR 0 409 3 318 260 0 10 chr4 364366 364558 -183924104 + (TTAGGG)n Simple_repeat Simple_repeat 1 190 0 1646 168 9 7 chr4 365244 365589 -183923073 - MER4A LTR ERV1 0 664 261 667 121 0 10 chr4 365589 365688 -183922974 - MER4A LTR ERV1 -566 98 1 4233 208 177 73 chr4 366570 367095 -183921567 - L1MC3 LINE L1 -1 7784 7315 279 219 14 14 chr4 367095 367168 -183921494 - MLT1F1 LTR MaLR -450 117 45 4233 208 177 73 chr4 367168 367665 -183920997 - L1MC3 LINE L1 -470 7315 6871 3531 208 25 62 chr4 367665 368666 -183919996 - LTR5 LTR ERVK 0 969 6 4233 208 177 73 chr4 368666 368994 -183919668 - L1MC3 LINE L1 -914 6871 6578 1757 184 36 65 chr4 368994 369439 -183919223 - MSTB1 LTR MaLR 0 432 1 4233 208 177 73 chr4 369439 369847 -183918815 - L1MC3 LINE L1 -1207 6578 5762 270 215 15 100 chr4 369994 370087 -183918575 - LTR37A LTR ERV1 -304 122 41 1612 152 98 0 chr4 370087 370351 -183918311 - AluJb SINE Alu -22 290 1 270 215 15 100 chr4 370351 370387 -183918275 - LTR37A LTR ERV1 -385 41 4 1875 189 29 11 chr4 370403 370778 -183917884 - MER31-int LTR ERV1 -696 4240 3859 1297 263 47 8 chr4 370819 371180 -183917482 - LTR10C LTR ERV1 -29 562 188 225 0 0 0 chr4 371202 371227 -183917435 + (CA)n Simple_repeat Simple_repeat 2 26 0 681 174 12 81 chr4 371299 371471 -183917191 - MER31-int LTR ERV1 -1064 3872 3713 7545 34 0 3 chr4 371572 372926 -183915736 - L1PA4 LINE L1 -3 6152 4811 2462 213 47 72 chr4 372926 373565 -183915097 - MER31-int LTR ERV1 -1207 3729 3112 2234 93 0 0 chr4 373565 373874 -183914788 - AluY SINE Alu 0 310 2 2462 213 47 72 chr4 373874 374044 -183914618 - MER31-int LTR ERV1 -1824 3112 2939 1222 214 82 55 chr4 374058 374567 -183914095 - MER31-int LTR ERV1 -2705 2231 1709 1132 154 75 143 chr4 374576 375030 -183913632 + LTR60 LTR ERV1 127 549 -37 * 4151 137 75 166 chr4 374870 377499 -183911163 + TAR1 Satellite telomeric 1 2388 -233 1409 6 11 11 chr4 377499 377679 -183910983 + (TTAGGG)n Simple_repeat Simple_repeat 1 180 0 1857 272 70 19 chr4 577694 577762 -183710900 + L1M4 LINE L1 2197 2260 -3886 2060 120 0 7 chr4 577762 578070 -183710592 + AluSx SINE Alu 2 307 -5 1857 272 70 19 chr4 578070 578692 -183709970 + L1M4 LINE L1 2260 2922 -3224 1894 140 105 79 chr4 579213 579330 -183709332 - Tigger1 DNA MER2_type -8 2410 2297 1851 173 0 7 chr4 579330 579636 -183709026 - AluJb SINE Alu -8 304 1 1894 140 105 79 chr4 579636 579668 -183708994 - Tigger1 DNA MER2_type -121 2297 2267 2131 109 0 10 chr4 579668 579971 -183708691 - AluSg SINE Alu -10 300 1 1894 140 105 79 chr4 579971 580326 -183708336 - Tigger1 DNA MER2_type -151 2267 1892 331 294 9 0 chr4 580427 580536 -183708126 + L1MEc LINE L1 636 745 -5651 281 75 0 0 chr4 580543 580583 -183708079 + Alu SINE Alu 1 40 -263 318 332 5 53 chr4 580753 580844 -183707818 + HAL1 LINE L1 1 80 -2427 2192 118 0 0 chr4 580844 581149 -183707513 + AluSg SINE Alu 1 305 -5 318 332 5 53 chr4 581149 581247 -183707415 + HAL1 LINE L1 80 181 -2326 286 261 85 39 chr4 581636 581789 -183706873 + HAL1 LINE L1 689 848 -1659 677 226 35 49 chr4 581889 582079 -183706583 - MER54B LTR ERVL -114 679 491 1851 126 10 7 chr4 582079 582372 -183706290 - AluSx SINE Alu -18 294 1 677 226 35 49 chr4 582372 582407 -183706255 - MER54B LTR ERVL -302 491 457 322 311 136 60 chr4 582808 583647 -183705015 - L1M2 LINE L1 -5578 1271 369 1370 249 68 66 chr4 584428 584530 -183704132 - L1M4 LINE L1 -876 5270 5170 1474 187 21 7 chr4 584530 584814 -183703848 + AluJo SINE Alu 1 288 -24 1370 249 68 66 chr4 584814 585494 -183703168 - L1M4 LINE L1 -976 5170 4487 707 82 21 0 chr4 585604 585701 -183702961 - AluSg/x SINE Alu -14 295 197 1761 111 0 8 chr4 585703 585947 -183702715 - AluSg SINE Alu -68 242 1 * 2033 113 7 20 chr4 585947 586247 -183702415 - AluSq SINE Alu -17 296 1 1166 131 0 17 chr4 586392 586568 -183702094 + AluJo SINE Alu 17 189 -123 726 226 0 20 chr4 586725 586871 -183701791 + AluJb SINE Alu 150 292 -20 22 70 0 0 chr4 587043 587086 -183701576 + GC_rich Low_complexity Low_complexity 1 43 0 211 272 27 34 chr4 587114 587261 -183701401 + (CCCCG)n Simple_repeat Simple_repeat 4 149 0 * 337 275 0 67 chr4 587163 587356 -183701306 + C-rich Low_complexity Low_complexity 1 180 0 22 56 0 0 chr4 587383 587419 -183701243 + GC_rich Low_complexity Low_complexity 1 36 0 25 31 0 0 chr4 587441 587473 -183701189 + GC_rich Low_complexity Low_complexity 1 32 0 478 172 57 0 chr4 590691 590848 -183697814 + (CAGAGA)n Simple_repeat Simple_repeat 1 166 0 2137 184 44 0 chr4 591021 591456 -183697206 - MER54B LTR ERVL -339 454 1 344 179 0 38 chr4 591491 591597 -183697065 + HAL1 LINE L1 1029 1130 -1377 2397 88 0 0 chr4 591597 591902 -183696760 + AluSx SINE Alu 1 305 -7 237 291 63 0 chr4 591902 591981 -183696681 + HAL1 LINE L1 2049 2132 -375 2417 76 0 3 chr4 592682 592986 -183695676 - AluSg SINE Alu -7 303 1 1337 153 19 0 chr4 593096 593312 -183695350 + AluJb SINE Alu 85 304 -8 189 0 0 0 chr4 593715 593736 -183694926 + (A)n Simple_repeat Simple_repeat 1 21 0 2203 90 3 13 chr4 593740 594041 -183694621 + AluSx SINE Alu 1 298 -14 385 234 46 46 chr4 596549 596724 -183691938 + (CAGCC)n Simple_repeat Simple_repeat 1 175 0 579 176 12 18 chr4 598549 598719 -183689943 + (TCTCTG)n Simple_repeat Simple_repeat 3 171 0 353 314 45 125 chr4 599358 599491 -183689171 - L1M4 LINE L1 -2972 3174 3032 2221 106 3 0 chr4 599491 599792 -183688870 - AluSp SINE Alu -11 302 1 2022 91 60 24 chr4 599800 600098 -183688564 - AluSg SINE Alu -1 309 1 353 314 45 125 chr4 600098 600148 -183688514 - L1M4 LINE L1 -3121 3025 2973 1323 199 64 18 chr4 600148 600430 -183688232 - AluJo SINE Alu -4 298 4 353 314 45 125 chr4 600430 600707 -183687955 - L1M4 LINE L1 -3173 2973 2742 407 349 88 0 chr4 600768 600960 -183687702 + MIR SINE MIR 7 215 -47 897 204 19 0 chr4 603516 603673 -183684989 - FRAM SINE Alu -6 160 1 2150 76 38 3 chr4 603701 603991 -183684671 + AluY SINE Alu 1 300 -11 1829 87 61 4 chr4 603994 604258 -183684404 + AluSq SINE Alu 1 279 -34 418 350 154 28 chr4 605688 606051 -183682611 - L1M4 LINE L1 -787 5359 4951 2174 93 13 7 chr4 606232 606534 -183682128 - AluSp SINE Alu -1 312 9 2033 125 0 7 chr4 606544 606840 -183681822 - AluSx SINE Alu -18 294 1 951 181 43 11 chr4 606940 607128 -183681534 - L1MB3 LINE L1 -1 6182 5989 270 316 118 0 chr4 607156 607292 -183681370 + L1MB8 LINE L1 6026 6177 -1 1670 145 71 18 chr4 607945 608228 -183680434 - AluJo SINE Alu -14 298 1 1228 207 13 53 chr4 608230 608516 -183680146 + L1ME1 LINE L1 4895 5164 -982 3543 154 71 119 chr4 608516 609112 -183679550 + MER21A LTR ERV1 1 533 -398 2210 119 0 0 chr4 609112 609415 -183679247 + AluSx SINE Alu 1 303 -9 3543 154 71 119 chr4 609415 609793 -183678869 + MER21A LTR ERV1 533 928 -3 1228 207 13 53 chr4 609793 609883 -183678779 + L1ME1 LINE L1 5164 5256 -890 941 88 0 0 chr4 609884 610009 -183678653 + AluSx SINE Alu 1 125 -188 189 171 0 0 chr4 610009 610044 -183678618 + (CATATA)n Simple_repeat Simple_repeat 4 38 0 263 221 23 0 chr4 610049 610135 -183678527 + L1MC4 LINE L1 6614 6701 -1341 832 157 0 0 chr4 610136 610270 -183678392 + AluSx SINE Alu 1 134 -178 207 162 0 0 chr4 610270 610307 -183678355 + (CATATA)n Simple_repeat Simple_repeat 2 38 0 246 218 51 0 chr4 610312 610390 -183678272 + L1MC4 LINE L1 6614 6695 -1347 1160 147 0 0 chr4 610390 610560 -183678102 + AluSx SINE Alu 123 292 -18 2175 92 0 30 chr4 610564 610868 -183677794 + AluSg SINE Alu 1 295 -15 481 154 86 8 chr4 610874 610991 -183677671 + L1ME1 LINE L1 5258 5383 -950 1103 221 24 4 chr4 611047 611301 -183677361 + Tigger3(Golem) DNA MER2_type 2771 3029 0 2010 241 52 10 chr4 611305 611914 -183676748 + L1ME1 LINE L1 5352 5986 -180 813 304 67 52 chr4 612010 612199 -183676463 + L1 LINE L1 2745 2930 -3216 2157 113 0 10 chr4 612199 612500 -183676162 + AluSg SINE Alu 1 298 -12 813 304 67 52 chr4 612500 612731 -183675931 + L1 LINE L1 2930 3171 -2975 762 310 21 7 chr4 612827 612920 -183675742 + MER7A DNA MER2_type 1 91 -2947 2147 61 40 24 chr4 612920 613216 -183675446 - AluY SINE Alu -10 301 1 1918 126 42 3 chr4 613216 613502 -183675160 - AluSx SINE Alu -15 297 1 762 310 21 7 chr4 613502 613694 -183674968 + MER7A DNA MER2_type 90 289 -57 644 354 51 60 chr4 613777 614276 -183674386 + L1 LINE L1 4208 4701 -1445 4368 157 22 1 chr4 614924 615662 -183673000 + L1MB3 LINE L1 5431 6183 0 5331 105 16 5 chr4 615667 617008 -183671654 + L1PA10 LINE L1 4724 6150 -18 2081 98 0 33 chr4 617008 617315 -183671347 - AluSq SINE Alu -16 297 1 1281 185 8 13 chr4 617517 617755 -183670907 + AluJb SINE Alu 1 237 -75 272 25 50 0 chr4 617762 617802 -183670860 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 322 381 59 23 chr4 618021 618525 -183670137 + L1 LINE L1 3081 3689 -2457 1141 309 127 35 chr4 619195 619575 -183669087 - L1ME1 LINE L1 -66 6100 5756 2542 59 0 0 chr4 619575 619880 -183668782 - AluY SINE Alu -6 305 1 1141 309 127 35 chr4 619880 620215 -183668447 - L1ME1 LINE L1 -410 5756 5319 2407 96 0 0 chr4 620215 620528 -183668134 - AluSq SINE Alu 0 313 1 627 202 0 0 chr4 620533 620637 -183668025 - FRAM SINE Alu -14 162 59 1928 134 7 3 chr4 622001 622292 -183666370 - AluJb SINE Alu -18 294 3 2252 78 0 10 chr4 623344 623639 -183665023 - AluY SINE Alu -19 292 1 617 185 92 0 chr4 623906 624025 -183664637 - FLAM_C SINE Alu -1 132 3 617 285 97 0 chr4 624156 624384 -183664278 - L1MC/D LINE L1 -586 5773 5524 2338 77 3 0 chr4 624696 624995 -183663667 - AluSx SINE Alu -12 300 1 1280 20 0 0 chr4 625013 625160 -183663502 - SVA Other Other 0 1386 1240 395 216 78 0 chr4 625163 625279 -183663383 - L1MC/D LINE L1 -817 5329 5205 1140 335 64 34 chr4 625487 625661 -183663001 - L1MC/D LINE L1 -1278 4868 4701 2392 55 3 0 chr4 625661 625952 -183662710 + AluY SINE Alu 1 292 -19 1140 335 64 34 chr4 625952 626562 -183662100 - L1MC/D LINE L1 -1445 4701 4061 2015 113 48 3 chr4 626584 626876 -183661786 + AluSx SINE Alu 1 305 -7 789 175 0 58 chr4 626889 627043 -183661619 - FRAM SINE Alu -24 152 8 734 231 95 27 chr4 627551 627772 -183660890 - AluJo SINE Alu -76 236 1 1243 271 60 17 chr4 627864 627934 -183660728 - L1MC/D LINE L1 -2211 3935 3869 528 114 13 0 chr4 627934 628013 -183660649 + MADE1 DNA Mariner 1 80 0 1243 271 60 17 chr4 628013 628478 -183660184 - L1MC/D LINE L1 -2277 3869 3377 236 368 129 21 chr4 628658 628998 -183659664 - L1MC/D LINE L1 -3010 3136 2760 310 299 17 0 chr4 629086 629203 -183659459 - L1MC/D LINE L1 -3538 2608 2490 724 213 0 7 chr4 630991 631132 -183657530 + AluJo SINE Alu 86 225 -87 716 194 8 8 chr4 631125 631259 -183657403 + AluJo/FRAM SINE Alu 163 296 -16 * 367 304 56 43 chr4 631309 631470 -183657192 + L1ME1 LINE L1 5262 5424 -2384 3678 183 56 67 chr4 631728 632206 -183656456 + Tigger1 DNA MER2_type 20 502 -1916 1631 157 27 20 chr4 632206 632499 -183656163 + AluJb SINE Alu 1 295 -17 3678 183 56 67 chr4 632499 633007 -183655655 + Tigger1 DNA MER2_type 502 995 -1423 239 207 49 37 chr4 633007 633089 -183655573 + Tigger1 DNA MER2_type 913 995 -1423 252 207 49 37 chr4 633089 633171 -183655491 + Tigger1 DNA MER2_type 913 995 -1423 2221 65 7 0 chr4 633291 633569 -183655093 + AluY SINE Alu 16 295 -16 1265 147 8 37 chr4 633571 633816 -183654846 + Tigger1 DNA MER2_type 1173 1410 -1008 291 195 26 26 chr4 637556 637633 -183651029 - MER58 DNA MER1_type -2311 109 33 266 272 20 54 chr4 638179 638326 -183650336 + (CACG)n Simple_repeat Simple_repeat 2 143 0 * 477 234 0 65 chr4 638248 638432 -183650230 + (CA)n Simple_repeat Simple_repeat 1 172 0 213 218 0 52 chr4 638493 638694 -183649968 + (CA)n Simple_repeat Simple_repeat 1 190 0 268 232 0 56 chr4 638715 639010 -183649652 + (CA)n Simple_repeat Simple_repeat 1 278 0 474 265 0 49 chr4 639025 639210 -183649452 + (CA)n Simple_repeat Simple_repeat 2 177 0 241 201 13 40 chr4 639221 639370 -183649292 + (CA)n Simple_repeat Simple_repeat 2 146 0 349 241 73 0 chr4 642290 642388 -183646274 - AluJ/FLAM SINE Alu -217 85 1 509 270 128 0 chr4 642388 642592 -183646070 - L1M4 LINE L1 -3119 3027 2798 863 259 64 4 chr4 643143 643409 -183645253 + L1ME1 LINE L1 5566 5847 -319 341 299 51 51 chr4 643409 643594 -183645068 + L1MD2 LINE L1 5973 6135 -224 2088 96 24 10 chr4 643611 643902 -183644760 - AluSp SINE Alu -17 296 2 1667 176 3 37 chr4 644519 644842 -183643820 + AluSx SINE Alu 1 312 0 1712 148 35 0 chr4 644847 645131 -183643531 + AluJo SINE Alu 6 299 -13 4268 176 79 129 chr4 645159 646944 -183641718 - pTR5 LTR ERV1 0 2438 743 2070 113 10 0 chr4 647511 647789 -183640873 + AluSx SINE Alu 1 284 -28 297 0 0 0 chr4 647789 647822 -183640840 + (CA)n Simple_repeat Simple_repeat 2 34 0 2070 113 10 0 chr4 647822 647843 -183640819 + AluSx SINE Alu 284 303 -9 2334 82 3 3 chr4 648920 649226 -183639436 - AluSc SINE Alu -3 306 1 2150 117 0 13 chr4 649232 649548 -183639114 - AluSx SINE Alu 0 312 1 23 0 0 0 chr4 653724 653747 -183634915 + AT_rich Low_complexity Low_complexity 1 23 0 2312 84 0 0 chr4 654874 655170 -183633492 - AluY SINE Alu -15 296 1 442 236 138 11 chr4 656013 656187 -183632475 - L1MC1 LINE L1 -1 6332 6137 1698 223 61 17 chr4 656303 656828 -183631834 - L1MC1 LINE L1 -382 5951 5404 265 347 35 15 chr4 658946 659145 -183629517 + L1MEd LINE L1 1306 1508 -5022 370 310 85 3 chr4 659147 659297 -183629365 + L1MEd LINE L1 1533 1696 -4844 1826 104 4 4 chr4 660344 660612 -183628050 - AluSc SINE Alu -3 306 39 1439 126 0 0 chr4 660712 660919 -183627743 + AluSq SINE Alu 91 297 -16 231 264 58 11 chr4 660931 661018 -183627644 - L1MC1 LINE L1 -2204 3942 3852 327 299 125 69 chr4 661494 662481 -183626181 + L1M2 LINE L1 369 1250 -5599 2135 99 10 6 chr4 665539 665851 -183622811 + AluSq SINE Alu 1 313 0 1006 235 40 99 chr4 665851 666297 -183622365 - Cheshire DNA MER1_type -1584 836 417 264 200 146 0 chr4 666448 666558 -183622104 - Cheshire DNA MER1_type -2216 204 79 448 184 0 0 chr4 666562 666638 -183622024 - AluJ/FLAM SINE Alu -236 76 1 442 241 25 64 chr4 667721 667754 -183620908 + L1MC5 LINE L1 7552 7585 -376 1687 166 44 0 chr4 667754 668049 -183620613 + AluJb SINE Alu 1 308 -4 442 241 25 64 chr4 668049 668218 -183620444 + L1MC5 LINE L1 7585 7746 -215 2215 86 0 35 chr4 668364 668678 -183619984 - AluSg SINE Alu -7 303 1 361 273 81 68 chr4 669176 669337 -183619325 - L1M4 LINE L1 -1575 4571 4409 1527 108 5 0 chr4 669344 669558 -183619104 + AluSg SINE Alu 1 215 -95 296 169 70 14 chr4 669666 669737 -183618925 + L1MD3 LINE L1 7921 7995 0 306 325 6 12 chr4 672880 673043 -183615619 + (CA)n Simple_repeat Simple_repeat 1 162 0 21 0 0 0 chr4 673496 673517 -183615145 + GC_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr4 674725 674755 -183613907 + GC_rich Low_complexity Low_complexity 1 30 0 310 382 94 9 chr4 674861 675094 -183613568 + HAL1 LINE L1 1011 1263 -1244 259 261 125 45 chr4 678367 678543 -183610119 - MLT1C LTR MaLR -269 198 9 21 57 0 0 chr4 679808 679843 -183608819 + GC_rich Low_complexity Low_complexity 1 35 0 2000 112 0 31 chr4 681631 681952 -183606710 + AluY SINE Alu 1 311 0 1370 187 100 2 chr4 681963 682347 -183606315 - MER31A LTR ERV1 -21 445 1 2351 55 3 0 chr4 682855 683147 -183605515 - AluY SINE Alu -18 293 1 512 261 252 13 chr4 683271 683585 -183605077 - L2 LINE L2 -14 3299 2911 538 107 68 10 chr4 685207 685310 -183603352 - MER34B LTR ERV1 -155 410 302 551 224 176 0 chr4 685378 685437 -183603225 + L1MC3 LINE L1 6784 6831 -954 2080 119 3 3 chr4 685437 685739 -183602923 + AluSp SINE Alu 1 302 -11 551 224 176 0 chr4 685739 685889 -183602773 + L1MC3 LINE L1 6831 7030 -755 352 133 42 0 chr4 685889 685972 -183602690 + FRAM/FAM SINE Alu 21 84 -91 335 285 60 98 chr4 686084 686319 -183602343 - L1MEc LINE L1 -3810 2572 2347 235 291 0 13 chr4 686515 686594 -183602068 + (TG)n Simple_repeat Simple_repeat 1 78 0 451 305 110 54 chr4 686752 687455 -183601207 - L1MEc LINE L1 -4638 1895 999 1779 119 8 0 chr4 688093 688345 -183600317 + AluSx SINE Alu 40 293 -19 180 233 50 67 chr4 688579 688639 -183600023 + L2 LINE L2 3204 3262 -10 309 292 62 10 chr4 690261 690357 -183598305 - L1MCa LINE L1 -3102 3324 3224 211 200 0 0 chr4 690361 690396 -183598266 + (TATG)n Simple_repeat Simple_repeat 2 36 0 1103 258 36 32 chr4 690428 690502 -183598160 - L1MCa LINE L1 -3212 3214 3142 1600 114 0 5 chr4 690502 690722 -183597940 + AluSg SINE Alu 1 219 -91 1103 258 36 32 chr4 690722 691116 -183597546 - L1MCa LINE L1 -3284 3142 2744 340 315 152 16 chr4 691330 691587 -183597075 + MLT1E LTR MaLR 301 592 -1 515 327 97 4 chr4 691600 691878 -183596784 - L1MCa LINE L1 -4002 2605 2302 402 304 57 53 chr4 691911 692174 -183596488 - L1MCa LINE L1 -4837 1591 1275 846 99 0 0 chr4 697687 697798 -183590864 + AluSp SINE Alu 1 111 -202 1592 130 53 37 chr4 698156 698455 -183590207 - AluJo SINE Alu -8 304 1 266 195 134 12 chr4 698582 698664 -183589998 + MER68 LTR ERV1 60 151 -411 502 265 0 32 chr4 699400 699585 -183589077 + (CA)n Simple_repeat Simple_repeat 1 179 0 * 510 318 11 19 chr4 699537 699965 -183588697 + (CACG)n Simple_repeat Simple_repeat 1 424 0 416 326 0 27 chr4 699946 700130 -183588532 + (CA)n Simple_repeat Simple_repeat 1 179 0 * 339 365 0 0 chr4 700207 700385 -183588277 + (CA)n Simple_repeat Simple_repeat 1 178 0 320 234 124 29 chr4 702450 702587 -183586075 + MER77 LTR ERV1 62 211 -394 418 293 55 0 chr4 702609 702790 -183585872 + MER77 LTR ERV1 407 597 -8 1982 112 3 39 chr4 703340 703652 -183585010 - AluSx SINE Alu -9 303 3 711 133 0 0 chr4 703654 703759 -183584903 - AluSg/x SINE Alu -8 301 197 2159 79 7 0 chr4 707094 707411 -183581251 + AluSg SINE Alu 1 319 0 1768 136 3 29 chr4 708373 708681 -183579981 + AluJo SINE Alu 1 300 -12 207 315 0 0 chr4 708704 708758 -183579904 + GA-rich Low_complexity Low_complexity 6 59 0 331 202 20 50 chr4 709968 710067 -183578595 + L1MC2 LINE L1 6240 6335 -9 1964 84 0 15 chr4 710072 710335 -183578327 + AluSc SINE Alu 15 273 -36 2313 75 0 3 chr4 710973 711268 -183577394 + AluSx SINE Alu 1 294 -18 256 262 0 16 chr4 713193 713254 -183575408 + GA-rich Low_complexity Low_complexity 3 62 0 2144 102 3 7 chr4 714350 714654 -183574008 + AluSx SINE Alu 1 303 -9 1537 167 30 13 chr4 714722 715021 -183573641 + AluJb SINE Alu 3 306 -6 329 313 123 20 chr4 715205 715400 -183573262 + L1ME1 LINE L1 5263 5477 -882 2491 147 159 16 chr4 717200 717746 -183570916 + MER51A LTR ERV1 2 625 -9 467 213 48 69 chr4 717830 718182 -183570480 + (CACGC)n Simple_repeat Simple_repeat 1 344 0 789 174 8 0 chr4 720780 720912 -183567750 + AluJo SINE Alu 3 135 -177 1399 181 72 22 chr4 720912 721189 -183567473 + AluJo SINE Alu 1 291 -21 1721 91 0 29 chr4 721301 721543 -183567119 - AluSq SINE Alu -78 235 1 212 296 0 34 chr4 726707 726883 -183561779 + (CA)n Simple_repeat Simple_repeat 1 170 0 429 309 85 15 chr4 727630 727907 -183560755 + L1ME1 LINE L1 3138 3779 -2367 1179 293 20 8 chr4 728004 728396 -183560266 + L1ME1 LINE L1 3944 4340 -1806 1728 240 88 11 chr4 728400 728600 -183560062 + L1ME1 LINE L1 5075 5258 -908 1528 141 148 0 chr4 728600 728856 -183559806 - AluJb SINE Alu -6 296 3 1728 240 88 11 chr4 728856 729469 -183559193 + L1ME1 LINE L1 5258 5943 -223 230 328 25 42 chr4 729817 730058 -183558604 + L1ME1 LINE L1 5841 6077 -89 26 0 0 0 chr4 730141 730167 -183558495 + AT_rich Low_complexity Low_complexity 1 26 0 1083 252 232 2 chr4 730229 730773 -183557889 + L1MD1 LINE L1 3527 4195 -1951 450 186 0 21 chr4 730779 730876 -183557786 + L1MA8 LINE L1 6026 6120 -171 483 221 31 0 chr4 730881 731008 -183557654 + L1MA8 LINE L1 6157 6287 -4 570 315 89 33 chr4 731729 732198 -183556464 + L2 LINE L2 2776 3279 -34 909 144 14 14 chr4 732218 732364 -183556298 + FRAM SINE Alu 13 158 -18 2193 87 10 16 chr4 732370 732679 -183555983 + AluY SINE Alu 5 311 0 2397 66 0 3 chr4 732912 733214 -183555448 - AluSc SINE Alu -8 301 1 793 217 120 77 chr4 733338 733467 -183555195 + L1MD1 LINE L1 4725 4847 -1395 2187 100 30 0 chr4 733467 733766 -183554896 - AluSx SINE Alu -4 308 1 793 217 120 77 chr4 733766 734408 -183554254 + L1MD1 LINE L1 4847 5520 -722 921 221 142 40 chr4 734411 734605 -183554057 + MLT1B LTR MaLR 1 174 -216 2245 103 0 0 chr4 734605 734907 -183553755 + AluSx SINE Alu 1 302 -10 921 221 142 40 chr4 734907 735065 -183553597 + MLT1B LTR MaLR 174 389 -1 1207 210 73 6 chr4 735066 735380 -183553282 + L1MD1 LINE L1 5527 5861 -381 416 263 226 29 chr4 735381 735655 -183553007 + L1MD1 LINE L1 5915 6242 0 1875 141 0 21 chr4 735759 736049 -183552613 + AluJo SINE Alu 1 284 -28 22 0 0 0 chr4 736194 736216 -183552446 + AT_rich Low_complexity Low_complexity 1 22 0 1192 217 25 39 chr4 736251 736275 -183552387 + L1ME LINE L1 5369 5392 -772 2019 108 30 3 chr4 736275 736570 -183552092 + AluSx SINE Alu 1 303 -9 1192 217 25 39 chr4 736570 736905 -183551757 + L1ME LINE L1 5392 5723 -441 607 185 15 11 chr4 736969 737105 -183551557 + MSTA LTR MaLR 3 141 -234 229 245 0 0 chr4 737272 737325 -183551337 + MSTA LTR MaLR 129 181 -247 456 219 0 0 chr4 737362 737458 -183551204 + AluSg/x SINE Alu 209 304 -6 1338 158 113 34 chr4 737934 738262 -183550400 + MLT1A1 LTR MaLR 12 365 0 483 352 82 9 chr4 738754 738987 -183549675 + MIR SINE MIR 4 253 -9 221 212 0 30 chr4 739188 739254 -183549408 + (CCGCT)n Simple_repeat Simple_repeat 4 67 0 2203 104 3 0 chr4 739516 739805 -183548857 - AluSx SINE Alu -22 290 1 779 191 19 13 chr4 739831 739988 -183548674 + FRAM SINE Alu 1 158 -18 2280 97 7 0 chr4 740200 740509 -183548153 - AluSp SINE Alu -2 311 1 600 195 55 16 chr4 741020 741148 -183547514 + FLAM_A SINE Alu 1 133 0 770 206 41 85 chr4 741223 741539 -183547123 + MER46C DNA MER2_type 20 321 -17 427 284 147 47 chr4 744636 744666 -183543996 + MER102b DNA MER1_type 86 112 -1316 1895 59 134 0 chr4 744666 744943 -183543719 + AluSq SINE Alu 2 312 0 427 284 147 47 chr4 744943 745141 -183543521 + MER102b DNA MER1_type 112 340 -1 257 114 286 0 chr4 745252 745322 -183543340 + LTR54 LTR ERV1 391 480 -30 801 339 120 48 chr4 745564 746500 -183542162 - L2 LINE L2 -1010 2304 1302 1677 201 143 55 chr4 746796 747507 -183541155 + L1MC2 LINE L1 2320 3086 -3060 1340 123 0 47 chr4 747527 747738 -183540924 + AluSx SINE Alu 35 235 -77 3631 201 91 136 chr4 747760 748114 -183540548 + L1MC2 LINE L1 3073 3441 -2705 2136 107 0 10 chr4 748114 748413 -183540249 + AluSc SINE Alu 1 296 -13 3631 201 91 136 chr4 748413 748503 -183540159 + L1MC2 LINE L1 3441 3534 -2612 835 79 44 0 chr4 748503 748617 -183540045 + L1MA2 LINE L1 6186 6304 0 3631 201 91 136 chr4 748617 748722 -183539940 + L1MC2 LINE L1 3534 3642 -2504 2085 132 3 0 chr4 748722 749017 -183539645 + AluSq SINE Alu 1 296 -17 3631 201 91 136 chr4 749017 749662 -183539000 + L1MC2 LINE L1 3642 4315 -1831 2271 106 0 0 chr4 749662 749963 -183538699 + AluSx SINE Alu 1 301 -11 3631 201 91 136 chr4 749963 750456 -183538206 + L1MC2 LINE L1 4315 4765 -1381 561 204 0 0 chr4 750456 750554 -183538108 + FLAM_A SINE Alu 1 98 -44 3631 201 91 136 chr4 750554 750737 -183537925 + L1MC2 LINE L1 4765 4955 -1191 1137 67 0 0 chr4 750739 750874 -183537788 + AluSp SINE Alu 1 135 -178 2290 106 0 0 chr4 750874 751175 -183537487 + AluSx SINE Alu 1 301 -11 501 235 137 0 chr4 751180 751363 -183537299 + L1MC2 LINE L1 4958 5165 -981 2160 176 46 18 chr4 751395 751607 -183537055 + L1MC2 LINE L1 5753 5958 -386 2263 96 3 0 chr4 751607 751909 -183536753 + AluSq SINE Alu 1 303 -10 2160 176 46 18 chr4 751909 752166 -183536496 + L1MC2 LINE L1 5958 6240 -104 2267 89 0 0 chr4 752166 752490 -183536172 + AluSg SINE Alu 1 324 0 2160 176 46 18 chr4 752490 752518 -183536144 + L1MC2 LINE L1 6240 6266 -78 2210 101 7 3 chr4 752536 752833 -183535829 + AluSq SINE Alu 1 298 -15 441 204 0 0 chr4 755300 755437 -183533225 + (TG)n Simple_repeat Simple_repeat 1 137 0 219 177 0 0 chr4 755465 755527 -183533135 + (TG)n Simple_repeat Simple_repeat 2 63 0 243 0 0 0 chr4 756389 756416 -183532246 + (TG)n Simple_repeat Simple_repeat 1 27 0 252 200 0 0 chr4 756458 756518 -183532144 + (CA)n Simple_repeat Simple_repeat 1 60 0 305 360 81 37 chr4 756943 757315 -183531347 + L1MDa LINE L1 1271 1610 -1291 34 42 0 0 chr4 757319 757367 -183531295 + GC_rich Low_complexity Low_complexity 1 48 0 201 121 0 0 chr4 757745 757778 -183530884 + (CTG)n Simple_repeat Simple_repeat 1 33 0 21 0 0 0 chr4 757786 757807 -183530855 + GC_rich Low_complexity Low_complexity 1 21 0 195 235 0 0 chr4 760008 760059 -183528603 + G-rich Low_complexity Low_complexity 2 52 0 241 324 20 10 chr4 760372 760474 -183528188 + (CGTG)n Simple_repeat Simple_repeat 1 103 0 228 335 0 58 chr4 760427 760615 -183528047 + (TG)n Simple_repeat Simple_repeat 2 178 0 * 211 366 0 17 chr4 760737 760909 -183527753 + (TG)n Simple_repeat Simple_repeat 1 169 0 183 42 0 0 chr4 760960 760984 -183527678 + (TG)n Simple_repeat Simple_repeat 2 25 0 264 120 0 0 chr4 761177 761227 -183527435 + (TG)n Simple_repeat Simple_repeat 2 51 0 2125 77 42 0 chr4 763347 763632 -183525030 - AluSx SINE Alu -13 299 3 256 178 27 0 chr4 765139 765212 -183523450 + (TG)n Simple_repeat Simple_repeat 2 76 0 253 83 0 0 chr4 769570 769618 -183519044 - L1PA2 LINE L1 0 6155 6108 200 187 0 13 chr4 770676 770751 -183517911 + (CGGG)n Simple_repeat Simple_repeat 3 76 0 22 35 0 0 chr4 774771 774800 -183513862 + GC_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr4 774908 774931 -183513731 + GC_rich Low_complexity Low_complexity 1 23 0 297 0 0 0 chr4 776621 776654 -183512008 + (TCTCCC)n Simple_repeat Simple_repeat 5 37 0 6715 48 2 154 chr4 776660 777838 -183510824 + SVA Other Other 50 1047 -339 471 266 21 7 chr4 777980 778123 -183510539 - MLT1A2 LTR MaLR 0 374 230 1096 228 87 3 chr4 778167 778513 -183510149 + MLT1C LTR MaLR 3 377 -90 296 373 32 0 chr4 778503 778629 -183510033 + MER82 DNA MER2_type 516 645 -8 * 928 81 0 0 chr4 778991 779114 -183509548 - AluSp/q SINE Alu -16 297 175 217 230 13 0 chr4 779226 779378 -183509284 + (CA)n Simple_repeat Simple_repeat 2 155 0 202 217 0 17 chr4 779391 779451 -183509211 + (CCCA)n Simple_repeat Simple_repeat 3 61 0 316 195 20 23 chr4 779453 779712 -183508950 + (CA)n Simple_repeat Simple_repeat 1 258 0 364 266 12 0 chr4 779731 779900 -183508762 + (CA)n Simple_repeat Simple_repeat 2 172 0 236 284 15 0 chr4 783605 783672 -183504990 + MIR SINE MIR 82 149 -59 2266 87 3 3 chr4 784538 784838 -183503824 + AluSg SINE Alu 1 300 -10 252 255 0 32 chr4 785876 785970 -183502692 + C-rich Low_complexity Low_complexity 1 91 0 736 153 0 0 chr4 791345 791456 -183497206 + FLAM_C SINE Alu 1 111 -32 1350 118 24 0 chr4 791462 791673 -183496989 - AluY SINE Alu -12 299 84 278 125 0 0 chr4 791674 791714 -183496948 - AluY SINE Alu -52 249 210 183 333 0 0 chr4 792253 792298 -183496364 + L2 LINE L2 3225 3269 -3 2050 125 0 7 chr4 798511 798814 -183489848 - AluJb SINE Alu -11 301 1 1718 234 96 71 chr4 799178 799332 -183489330 - L1ME1 LINE L1 -75 6091 5942 2040 114 7 0 chr4 799332 799622 -183489040 - AluSx SINE Alu -20 292 1 1718 234 96 71 chr4 799622 800081 -183488581 - L1ME1 LINE L1 -224 5942 5449 2202 114 0 0 chr4 800081 800387 -183488275 + AluSx SINE Alu 1 306 -6 1718 234 96 71 chr4 800387 800693 -183487969 - L1ME1 LINE L1 -717 5449 5152 2304 110 0 0 chr4 800693 801001 -183487661 + AluSx SINE Alu 1 308 -4 1454 193 72 34 chr4 801004 801268 -183487394 + L1ME LINE L1 4664 4951 -1195 2225 93 0 26 chr4 801268 801578 -183487084 + AluSc SINE Alu 1 302 -7 1454 193 72 34 chr4 801578 801727 -183486935 + L1ME LINE L1 4951 5093 -1053 615 137 154 17 chr4 801728 801845 -183486817 - FLAM_C SINE Alu 0 133 1 2009 119 11 0 chr4 801897 802183 -183486479 + AluSx SINE Alu 1 289 -23 524 299 60 9 chr4 803546 803763 -183484899 + L1ME LINE L1 5359 5586 -578 536 15 0 0 chr4 803763 803828 -183484834 - AluY SINE Alu -10 300 236 22 35 0 0 chr4 804112 804141 -183484521 + GC_rich Low_complexity Low_complexity 1 29 0 403 306 177 23 chr4 806575 806875 -183481787 - L2 LINE L2 -254 3059 2806 2093 67 0 4 chr4 806875 807143 -183481519 - AluY SINE Alu -3 308 42 403 306 177 23 chr4 807143 807379 -183481283 - L2 LINE L2 -507 2806 2421 261 266 6 51 chr4 808660 808818 -183479844 + G-rich Low_complexity Low_complexity 5 155 0 633 175 79 16 chr4 810732 810759 -183477903 - AluJo/FRAM SINE Alu -14 298 274 2365 74 3 0 chr4 810759 811056 -183477606 + AluSg SINE Alu 1 298 -12 633 175 79 16 chr4 811056 811154 -183477508 - AluJo/FRAM SINE Alu -38 274 165 948 178 12 0 chr4 811166 811335 -183477327 - AluJo SINE Alu -21 291 121 2053 102 3 22 chr4 811364 811678 -183476984 + AluSc SINE Alu 1 308 -1 582 279 177 42 chr4 811679 811715 -183476947 - MER69 DNA AcHobo -64 2462 2432 2049 116 3 7 chr4 811715 812016 -183476646 + AluSx SINE Alu 1 300 -12 2350 84 0 3 chr4 812016 812327 -183476335 + AluSg SINE Alu 1 310 0 582 279 177 42 chr4 812327 812877 -183475785 - MER69 DNA AcHobo -93 2433 1796 357 227 84 17 chr4 813308 813427 -183475235 - MER74B LTR ERVL 0 622 496 259 194 65 0 chr4 813652 813714 -183474948 - MER74B LTR ERVL -483 139 74 2397 76 0 0 chr4 813714 814015 -183474647 + AluSq SINE Alu 1 301 -12 340 169 26 13 chr4 814170 814247 -183474415 + MER107 DNA MER1_type 71 148 -49 439 336 38 15 chr4 814318 814583 -183474079 + HERVL74 LTR ERVL 1671 1941 -3744 383 123 0 0 chr4 814660 814725 -183473937 + HERVL74 LTR ERVL 2096 2160 -3525 1511 164 17 40 chr4 814740 814882 -183473780 + AluJb SINE Alu 1 145 -167 180 0 0 0 chr4 814882 814902 -183473760 + (CAAT)n Simple_repeat Simple_repeat 1 20 0 1511 164 17 40 chr4 814902 815057 -183473605 + AluJb SINE Alu 145 291 -21 2410 218 60 35 chr4 815060 815227 -183473435 + HERVL74 LTR ERVL 2241 2402 -3283 2332 73 0 13 chr4 815227 815529 -183473133 - AluY SINE Alu -13 298 1 2410 218 60 35 chr4 815529 816165 -183472497 + HERVL74 LTR ERVL 2402 3064 -2621 362 291 52 23 chr4 816250 816422 -183472240 - MLT1D LTR MaLR -264 241 65 1576 216 138 12 chr4 816618 817157 -183471505 + MER39B LTR ERV1 1 649 -4 2305 100 0 0 chr4 817235 817534 -183471128 - AluSx SINE Alu -13 299 1 225 228 0 13 chr4 817567 817646 -183471016 - L1MB8 LINE L1 -4 6174 6097 534 250 83 74 chr4 817668 817964 -183470698 - L1MD3 LINE L1 0 8042 7770 1851 119 93 0 chr4 817964 818242 -183470420 + AluSx SINE Alu 7 310 -2 534 250 83 74 chr4 818242 818370 -183470292 - L1MD3 LINE L1 -272 7770 7645 333 314 32 16 chr4 818899 819023 -183469639 - L1ME LINE L1 -5932 138 13 1440 224 13 19 chr4 819323 819631 -183469031 - AluJo SINE Alu -6 306 1 1150 142 29 0 chr4 819705 819909 -183468753 + MER2 DNA MER2_type 1 210 -135 242 172 52 0 chr4 819948 820006 -183468656 + MER2 DNA MER2_type 280 340 -5 821 183 0 0 chr4 820054 820196 -183468466 + AluSg/x SINE Alu 169 310 0 381 329 17 69 chr4 823340 823422 -183465240 + L1ME1 LINE L1 5776 5861 -305 1636 170 47 55 chr4 823422 823786 -183464876 - THE1B LTR MaLR 0 364 4 381 329 17 69 chr4 823786 823934 -183464728 + L1ME1 LINE L1 5861 5994 -172 1433 140 131 44 chr4 825169 825470 -183463192 + THE1C LTR MaLR 1 274 -101 2260 70 3 26 chr4 825470 825772 -183462890 - AluY SINE Alu -16 295 1 243 0 0 0 chr4 825772 825799 -183462863 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1967 105 3 47 chr4 825799 826095 -183462567 - AluSg SINE Alu -27 283 1 1433 140 131 44 chr4 826095 826134 -183462528 + THE1C LTR MaLR 273 373 -2 324 237 144 17 chr4 826434 826485 -183462177 + L1MEc LINE L1 55 98 -6298 2081 124 0 3 chr4 826485 826783 -183461879 - AluSx SINE Alu -15 297 1 324 237 144 17 chr4 826783 826849 -183461813 + L1MEc LINE L1 98 187 -6209 3228 260 81 76 chr4 827089 827209 -183461453 + L1MEc LINE L1 1732 1850 -4365 1703 152 27 14 chr4 827209 827506 -183461156 + AluJo SINE Alu 12 312 0 3228 260 81 76 chr4 827506 828103 -183460559 + L1MEc LINE L1 1850 2443 -3772 2472 71 0 0 chr4 828103 828413 -183460249 + AluY SINE Alu 1 310 -1 3228 260 81 76 chr4 828413 829927 -183458735 + L1MEc LINE L1 2443 3949 -2266 1694 190 88 41 chr4 829927 830338 -183458324 + MSTB1 LTR MaLR 2 431 -1 2087 116 3 3 chr4 830346 830640 -183458022 + AluSq SINE Alu 1 294 -19 3228 260 81 76 chr4 830640 831226 -183457436 + L1MEc LINE L1 3955 4569 -1646 2120 99 7 0 chr4 831226 831518 -183457144 - AluSx SINE Alu -18 294 1 3228 260 81 76 chr4 831518 832000 -183456662 + L1MEc LINE L1 4569 5047 -1168 779 306 65 44 chr4 833253 833737 -183454925 - L1MB7 LINE L1 -9 6165 5676 260 267 13 20 chr4 836226 836376 -183452286 + CT-rich Low_complexity Low_complexity 2 150 0 318 366 57 60 chr4 841422 841687 -183446975 + HAL1 LINE L1 1013 1276 -1231 28 29 0 0 chr4 844287 844322 -183444340 + AT_rich Low_complexity Low_complexity 1 35 0 2274 56 3 11 chr4 845642 845928 -183442734 - AluY SINE Alu -27 284 1 2222 105 0 0 chr4 845928 846222 -183442440 - AluSg SINE Alu -16 294 1 819 234 148 10 chr4 846225 846411 -183442251 - L1MEc LINE L1 -4347 2049 1890 1787 117 0 0 chr4 846411 846658 -183442004 + AluSx SINE Alu 48 294 -18 819 234 148 10 chr4 846658 846761 -183441901 - L1MEc LINE L1 -4506 1890 1720 621 269 72 46 chr4 846814 846984 -183441678 - L1MEc LINE L1 -5107 1289 1125 2192 104 0 0 chr4 846984 847273 -183441389 - AluSx SINE Alu -23 289 1 621 269 72 46 chr4 847273 847492 -183441170 - L1MEc LINE L1 -5271 1125 890 1503 268 84 37 chr4 847629 847723 -183440939 - L1MEc LINE L1 -5424 972 884 1572 131 0 4 chr4 847723 847952 -183440710 - AluSq SINE Alu -85 228 1 1503 268 84 37 chr4 847952 848162 -183440500 - L1MEc LINE L1 -5512 884 685 1641 181 7 0 chr4 848162 848450 -183440212 - AluJb SINE Alu -22 290 1 1503 268 84 37 chr4 848450 848846 -183439816 - L1MEc LINE L1 -5711 685 238 318 302 52 0 chr4 851389 851505 -183437157 + MLT1A1 LTR MaLR 19 140 -225 262 288 55 0 chr4 852337 852500 -183436162 + (GTGTG)n Simple_repeat Simple_repeat 5 176 0 396 0 0 0 chr4 853986 854030 -183434632 + (TG)n Simple_repeat Simple_repeat 1 44 0 261 0 0 0 chr4 854075 854104 -183434558 + (TG)n Simple_repeat Simple_repeat 2 30 0 279 0 0 0 chr4 854140 854171 -183434491 + (TG)n Simple_repeat Simple_repeat 2 32 0 186 43 0 0 chr4 854209 854232 -183434430 + (TG)n Simple_repeat Simple_repeat 2 24 0 260 89 0 22 chr4 854266 854311 -183434351 + (TG)n Simple_repeat Simple_repeat 1 44 0 1832 173 7 0 chr4 855185 855486 -183433176 - AluJb SINE Alu -4 308 6 2198 105 20 0 chr4 855490 855794 -183432868 - AluSg SINE Alu 0 310 1 997 227 95 36 chr4 856087 856479 -183432183 - L1M3 LINE L1 -465 5715 5285 477 193 0 11 chr4 856502 856590 -183432072 - AluSg/x SINE Alu -26 284 198 433 211 13 0 chr4 856589 856665 -183431997 - AluJo SINE Alu -151 161 85 * 890 73 0 0 chr4 856766 856876 -183431786 - AluSq/x SINE Alu -203 110 1 200 328 160 0 chr4 863694 863813 -183424849 + MIR SINE MIR 68 205 -57 206 322 0 0 chr4 867050 867140 -183421522 + C-rich Low_complexity Low_complexity 1 90 0 2411 50 3 10 chr4 868478 868776 -183419886 - AluY SINE Alu -15 296 1 229 282 91 9 chr4 869380 869490 -183419172 - L1MD1 LINE L1 -1 6241 6123 1870 152 50 19 chr4 873574 873937 -183414725 - THE1C LTR MaLR -1 374 1 1485 112 0 5 chr4 874762 874968 -183413694 - AluSg/x SINE Alu -21 291 87 361 83 0 0 chr4 876474 876522 -183412140 + THE1C LTR MaLR 1 48 -327 2376 111 42 11 chr4 876544 876897 -183411765 + THE1B LTR MaLR 1 364 0 273 358 57 0 chr4 877494 877617 -183411045 + Tigger8 DNA MER2_type 170 299 -367 258 181 96 12 chr4 877710 877793 -183410869 + Tigger8 DNA MER2_type 434 523 -143 786 239 84 47 chr4 882272 882485 -183406177 + MER58A DNA MER1_type 1 221 -3 2143 88 14 3 chr4 882597 882894 -183405768 + AluSp SINE Alu 1 300 -13 543 222 50 14 chr4 884193 884349 -183404313 + MER74A LTR ERVL 23 239 -383 263 258 82 21 chr4 884442 884539 -183404123 + MER74B LTR ERVL 512 614 -8 2307 77 10 16 chr4 884627 884939 -183403723 + AluSp SINE Alu 1 310 -3 301 261 91 0 chr4 885800 885888 -183402774 + L1M4 LINE L1 69 164 -6695 341 197 13 0 chr4 885958 886034 -183402628 + L1P LINE L1 3714 3790 -2356 466 285 100 43 chr4 886464 886917 -183401745 + L1M4 LINE L1 1282 1728 -5219 * 3734 215 23 85 chr4 886902 888148 -183400514 + L1M4 LINE L1 4410 5578 -1379 421 205 49 8 chr4 888118 888240 -183400422 + L1MC1 LINE L1 2003 2129 -4830 * 2104 95 54 0 chr4 888243 888539 -183400123 + AluSx SINE Alu 1 312 0 1011 150 24 0 chr4 888539 888706 -183399956 + AluJb SINE Alu 134 304 -8 324 249 89 35 chr4 888718 888887 -183399775 + L1MC1 LINE L1 2273 2450 -4688 413 295 59 56 chr4 888890 889229 -183399433 + L1MC1 LINE L1 2528 2867 -4271 862 164 96 82 chr4 889229 889448 -183399214 - MLT1A2 LTR MaLR 0 374 153 3012 199 38 9 chr4 889467 890124 -183398538 - L1MB3 LINE L1 -30 6153 5478 1389 150 86 29 chr4 890286 890566 -183398096 - AluJb SINE Alu -16 296 1 820 133 55 0 chr4 890566 890694 -183397968 - AluSq/x SINE Alu -178 135 1 863 157 21 0 chr4 890696 890836 -183397826 - FRAM SINE Alu -17 159 17 1731 188 65 82 chr4 890849 890904 -183397758 - L1MB3 LINE L1 -697 5474 5420 771 197 0 0 chr4 890904 891036 -183397626 - FLAM_A SINE Alu -1 132 1 1731 188 65 82 chr4 891036 891148 -183397514 - L1MB3 LINE L1 -751 5420 5308 1704 173 3 10 chr4 891148 891443 -183397219 - AluJb SINE Alu -17 295 3 1731 188 65 82 chr4 891443 891890 -183396772 - L1MB3 LINE L1 -863 5308 4873 553 163 206 0 chr4 891908 892049 -183396613 - MLT1A2 LTR MaLR -220 170 1 671 242 55 19 chr4 892061 892351 -183396311 + L1MC1 LINE L1 2835 3133 -3824 * 1147 246 55 25 chr4 892342 892397 -183396265 + L1MC1 LINE L1 5162 5214 -1743 2026 124 3 13 chr4 892397 892704 -183395958 + AluSx SINE Alu 1 304 -8 1147 246 55 25 chr4 892704 893082 -183395580 + L1MC1 LINE L1 5214 5608 -1349 300 340 123 0 chr4 893100 893262 -183395400 - L1MEc LINE L1 -4016 2201 2020 757 292 79 17 chr4 893296 893649 -183395013 - L1MEc LINE L1 -4432 1964 1590 651 270 77 123 chr4 893672 893740 -183394922 + L1MC4 LINE L1 6885 6955 -853 1976 143 0 10 chr4 893740 894040 -183394622 + AluSx SINE Alu 1 297 -15 651 270 77 123 chr4 894040 894752 -183393910 + L1MC4 LINE L1 6955 7629 -179 457 254 71 56 chr4 895558 895755 -183392907 + L1MC4 LINE L1 7841 8040 -2 30 27 0 0 chr4 895827 895864 -183392798 + AT_rich Low_complexity Low_complexity 1 37 0 27 49 0 0 chr4 895903 895944 -183392718 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr4 895983 896004 -183392658 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr4 896051 896083 -183392579 + AT_rich Low_complexity Low_complexity 1 32 0 5873 143 45 22 chr4 896221 897398 -183391264 + L1MC1 LINE L1 5963 7144 0 195 346 28 60 chr4 898589 898771 -183389891 + L2 LINE L2 3133 3308 -5 191 267 67 0 chr4 899767 899842 -183388820 + L2 LINE L2 1705 1784 -1530 455 214 23 110 chr4 900018 900082 -183388580 + LTR37A LTR ERV1 260 328 -98 1961 178 103 0 chr4 900082 900470 -183388192 - MSTA LTR MaLR 0 428 1 455 214 23 110 chr4 900470 900497 -183388165 + LTR37A LTR ERV1 328 356 -70 1500 162 58 7 chr4 900497 900775 -183387887 - AluJo SINE Alu -20 292 1 455 214 23 110 chr4 900775 900855 -183387807 + LTR37A LTR ERV1 356 417 -9 888 193 119 30 chr4 901578 901780 -183386882 + MER58A DNA MER1_type 1 220 -4 1986 101 0 7 chr4 901783 902086 -183386576 + AluSg SINE Alu 23 310 0 920 123 0 0 chr4 902203 902333 -183386329 - FLAM_C SINE Alu 0 143 14 222 309 73 0 chr4 902897 902965 -183385697 + MIR SINE MIR 156 228 -34 417 281 10 0 chr4 905021 905117 -183383545 - MLT1K LTR MaLR -264 324 228 2528 196 38 108 chr4 905118 905971 -183382691 - MER54B LTR ERVL 0 793 1 417 162 40 0 chr4 905972 906046 -183382616 - MLT1K LTR MaLR -358 230 154 759 235 0 47 chr4 906783 906953 -183381709 + FRAM SINE Alu 1 162 -4 208 139 0 28 chr4 906956 906992 -183381670 + (GGAAA)n Simple_repeat Simple_repeat 1 35 0 294 373 83 0 chr4 907425 907618 -183381044 + L2 LINE L2 3094 3302 -11 2111 86 18 0 chr4 908174 908489 -183380173 + AluSx SINE Alu 1 320 0 316 326 31 23 chr4 908626 908755 -183379907 + L1MEc LINE L1 1277 1406 -4990 2190 105 3 10 chr4 908759 909064 -183379598 - AluSp SINE Alu -10 303 1 350 228 13 0 chr4 909114 909193 -183379469 - MER58 DNA MER1_type -1 2419 2340 1915 142 13 3 chr4 909261 909564 -183379098 + AluJb SINE Alu 1 306 -6 441 225 6 66 chr4 911418 911661 -183377001 + G-rich Low_complexity Low_complexity 1 228 0 288 0 0 0 chr4 911686 911718 -183376944 + (TAA)n Simple_repeat Simple_repeat 3 34 0 621 105 175 18 chr4 911764 911878 -183376784 + FLAM_C SINE Alu 1 132 -1 342 265 11 54 chr4 911997 912182 -183376480 + G-rich Low_complexity Low_complexity 4 180 0 1908 124 90 37 chr4 912341 912695 -183375967 + THE1C LTR MaLR 1 373 -2 9807 132 24 40 chr4 912699 914303 -183374359 + THE1C-int LTR MaLR 3 1580 0 1906 131 81 36 chr4 914303 914662 -183374000 + THE1C LTR MaLR 1 375 0 201 304 25 13 chr4 914666 914745 -183373917 + (CGGGA)n Simple_repeat Simple_repeat 4 83 0 * 263 286 40 34 chr4 914692 914867 -183373795 + (GGATG)n Simple_repeat Simple_repeat 4 179 0 963 161 11 5 chr4 917874 918060 -183370602 - Charlie1 DNA MER1_type -4 2757 2571 393 235 49 49 chr4 919556 919739 -183368923 + L1ME3A LINE L1 5096 5278 -868 2204 71 0 4 chr4 922010 922277 -183366385 + AluY SINE Alu 1 266 -45 2238 100 0 17 chr4 922485 922786 -183365876 + AluSx SINE Alu 17 312 0 216 345 56 39 chr4 923288 923520 -183365142 + MIR SINE MIR 8 243 -19 471 350 90 8 chr4 923847 924113 -183364549 + L1MEc LINE L1 1529 1816 -4580 2084 133 7 3 chr4 925085 925386 -183363276 - AluSx SINE Alu -10 302 1 1078 267 39 27 chr4 925771 925915 -183362747 + L1MEc LINE L1 2685 2826 -3389 2947 92 54 7 chr4 925915 926339 -183362323 + MLT2A1 LTR ERVL 1 444 0 1078 267 39 27 chr4 926339 926606 -183362056 + L1MEc LINE L1 2826 3101 -3114 421 67 0 0 chr4 926614 926674 -183361988 + L1P3 LINE L1 5723 5782 -372 1156 37 0 15 chr4 926678 926812 -183361850 + AluYb8 SINE Alu 1 132 -186 1352 316 38 15 chr4 926876 927688 -183360974 + L1MEc LINE L1 3365 4195 -2020 1060 142 111 0 chr4 928007 928197 -183360465 - AluJb SINE Alu -22 290 80 1121 105 26 0 chr4 928273 928426 -183360236 - AluSg/x SINE Alu -19 291 135 506 209 147 0 chr4 928427 928604 -183360058 - Charlie5 DNA MER1_type -60 2552 2350 205 297 120 47 chr4 929698 929890 -183358772 + L2 LINE L2 2155 2360 -954 807 252 13 4 chr4 930171 930401 -183358261 + L1ME3A LINE L1 5624 5855 -315 1145 223 21 7 chr4 930407 930690 -183357972 + AluSx SINE Alu 26 312 0 371 277 8 54 chr4 931174 931411 -183357251 + C-rich Low_complexity Low_complexity 1 226 0 216 344 0 27 chr4 931427 931610 -183357052 + C-rich Low_complexity Low_complexity 1 178 0 185 0 0 39 chr4 931646 931672 -183356990 + (CCCCCT)n Simple_repeat Simple_repeat 1 25 0 346 190 235 23 chr4 935150 935328 -183353334 - MLT1J1 LTR MaLR -249 201 3 211 283 43 22 chr4 936118 936210 -183352452 - L2 LINE L2 -120 3193 3100 223 296 92 7 chr4 936504 936646 -183352016 - L2 LINE L2 -285 3028 2875 369 0 0 0 chr4 936946 936987 -183351675 + (CA)n Simple_repeat Simple_repeat 2 42 0 539 321 117 20 chr4 937007 937380 -183351282 + L1ME LINE L1 2676 3088 -3058 324 324 36 21 chr4 937486 937693 -183350969 + L1ME LINE L1 5564 5773 -348 2301 95 0 7 chr4 937753 938047 -183350615 - AluSc SINE Alu -17 292 1 2320 72 21 3 chr4 938155 938445 -183350217 - AluY SINE Alu -15 296 2 23 0 0 0 chr4 939381 939404 -183349258 + AT_rich Low_complexity Low_complexity 1 23 0 1824 154 3 14 chr4 939404 939697 -183348965 - AluJo SINE Alu -22 290 1 2218 128 0 0 chr4 939707 940004 -183348658 - AluSx SINE Alu -15 297 1 843 275 36 14 chr4 941103 941379 -183347283 - L3b LINE CR1 -200 1383 1102 367 246 95 8 chr4 941740 941866 -183346796 + L1ME LINE L1 5344 5480 -641 2684 146 116 30 chr4 941899 942705 -183345957 + L1MCa LINE L1 1203 2207 -4219 2070 106 34 20 chr4 942705 942997 -183345665 + AluSx SINE Alu 1 296 -16 2684 146 116 30 chr4 942997 943256 -183345406 + L1MCa LINE L1 2207 2442 -3984 6690 209 75 114 chr4 943392 944235 -183344427 + L1MCa LINE L1 2428 3303 -3123 986 210 46 1 chr4 944235 944536 -183344126 - MER2 DNA MER2_type 0 345 1 6690 209 75 114 chr4 944536 946181 -183342481 + L1MCa LINE L1 3303 5106 -1320 319 343 73 7 chr4 946825 946962 -183341700 - MIR SINE MIR -97 165 20 238 220 0 0 chr4 947289 947339 -183341323 + L2 LINE L2 3183 3232 -81 350 229 58 122 chr4 947718 947923 -183340739 + MIR SINE MIR 1 192 -70 203 351 22 30 chr4 948001 948135 -183340527 + L2 LINE L2 2622 2754 -560 297 280 13 70 chr4 948239 948396 -183340266 - MIR SINE MIR 0 262 115 * 564 209 104 86 chr4 948391 948510 -183340152 + MIR SINE MIR 35 161 -101 2157 128 3 0 chr4 948510 948806 -183339856 + AluSx SINE Alu 1 297 -15 564 209 104 86 chr4 948806 948906 -183339756 + MIR SINE MIR 161 258 -4 1373 191 93 31 chr4 948949 949273 -183339389 + MER2 DNA MER2_type 1 344 0 918 251 212 6 chr4 949343 949706 -183338956 - L2 LINE L2 -337 2977 2540 7541 29 13 0 chr4 949717 950787 -183337875 - L1PA4 LINE L1 0 6155 5082 343 269 185 0 chr4 950794 950902 -183337760 - MIR SINE MIR -108 154 27 750 293 98 32 chr4 951260 951578 -183337084 + L1MDa LINE L1 27 374 -6166 1651 167 25 117 chr4 951578 952050 -183336612 - MSTB1 LTR MaLR 0 432 4 750 293 98 32 chr4 952050 952100 -183336562 + L1MDa LINE L1 374 419 -6121 234 313 1 13 chr4 952191 952279 -183336383 + L1MDa LINE L1 778 865 -5665 2539 92 14 0 chr4 952398 952747 -183335915 + L1PB1 LINE L1 5794 6147 -4 1480 229 72 13 chr4 952756 953333 -183335329 + L1MDa LINE L1 2155 2650 -3890 1173 176 5 11 chr4 953333 953521 -183335141 + AluJo SINE Alu 1 187 -125 1000 253 68 3 chr4 953629 953965 -183334697 + L1MDa LINE L1 2761 3118 -3422 192 304 14 29 chr4 954002 954071 -183334591 + L2 LINE L2 1164 1231 -2083 200 289 19 58 chr4 954097 954201 -183334461 + L2 LINE L2 1298 1397 -1917 1137 230 157 3 chr4 954223 954566 -183334096 + MSTD LTR MaLR 1 396 0 280 242 0 102 chr4 954775 954903 -183333759 + L2 LINE L2 3198 3312 -1 425 331 64 0 chr4 955288 955445 -183333217 + MIR SINE MIR 73 239 -23 478 330 52 6 chr4 955525 955698 -183332964 - MIR SINE MIR -70 192 12 265 215 131 0 chr4 956140 956247 -183332415 - L1ME4a LINE L1 -171 5950 5830 409 254 224 15 chr4 956383 956584 -183332078 + MIR SINE MIR 9 251 -11 378 303 25 8 chr4 956900 957022 -183331640 - MER5B DNA MER1_type 0 178 55 1171 257 150 1 chr4 957153 957847 -183330815 - L1ME3A LINE L1 -48 6122 5318 982 156 11 5 chr4 960011 960197 -183328465 - Charlie1 DNA MER1_type -4 2757 2571 389 235 50 50 chr4 961736 961915 -183326747 + L1M4 LINE L1 5096 5274 -872 2192 75 0 4 chr4 962892 963159 -183325503 + AluY SINE Alu 1 266 -45 2238 102 0 16 chr4 963365 963669 -183324993 + AluSx SINE Alu 14 312 0 234 354 42 23 chr4 964190 964405 -183324257 + MIR SINE MIR 25 243 -19 228 297 121 11 chr4 964763 964945 -183323717 + L1MDa LINE L1 1886 2087 -4634 2194 129 0 3 chr4 965971 966280 -183322382 - AluSx SINE Alu -4 308 1 232 273 65 0 chr4 967400 967477 -183321185 + L1ME3A LINE L1 6051 6132 -38 416 270 94 56 chr4 967509 967831 -183320831 + L1MDa LINE L1 3235 3609 -2931 1177 244 4 8 chr4 967831 968069 -183320593 + MER8 DNA MER2_type 1 237 -2 416 270 94 56 chr4 968069 968082 -183320580 + L1MDa LINE L1 3609 3620 -2920 338 83 0 0 chr4 968094 968142 -183320520 + AluYb8 SINE Alu 84 131 -177 1576 55 0 0 chr4 968174 968356 -183320306 + AluY SINE Alu 33 214 -97 2255 176 117 4 chr4 968476 968970 -183319692 - L1MB4 LINE L1 -8 6172 5623 565 238 171 6 chr4 968971 969152 -183319510 + LTR16A1 LTR ERVL 247 457 0 2386 107 3 0 chr4 969551 969861 -183318801 + AluSx SINE Alu 1 311 -1 198 258 40 113 chr4 970386 970510 -183318152 - MIR SINE MIR -111 151 37 258 0 30 0 chr4 970650 970683 -183317979 + (TTTG)n Simple_repeat Simple_repeat 2 128 0 2174 119 0 3 chr4 970683 970965 -183317697 - AluSx SINE Alu -9 303 1 951 254 82 21 chr4 971049 971630 -183317032 - L1ME LINE L1 -3750 2465 1892 560 269 14 30 chr4 971642 971861 -183316801 - L1ME LINE L1 -4216 2000 1423 * 4541 171 22 30 chr4 971848 972430 -183316232 - L1MB1 LINE L1 -1 6167 5582 2019 105 84 3 chr4 972430 972715 -183315947 - AluSg1 SINE Alu -1 308 1 4541 171 22 30 chr4 972715 973538 -183315124 - L1MB1 LINE L1 -586 5582 4772 2002 126 22 41 chr4 973538 973856 -183314806 - AluSx SINE Alu 0 312 1 4541 171 22 30 chr4 973856 973904 -183314758 - L1MB1 LINE L1 -1396 4772 4725 6817 175 34 14 chr4 973910 974913 -183313749 + L1 LINE L1 3255 4299 -1847 2146 96 21 11 chr4 974913 975216 -183313446 + AluY SINE Alu 1 306 0 6817 175 34 14 chr4 975216 975678 -183312984 + L1 LINE L1 4299 4750 -1396 686 264 89 84 chr4 975787 976519 -183312143 - L1ME LINE L1 -4896 1321 684 286 301 11 23 chr4 976755 976931 -183311731 - L1ME LINE L1 -5607 598 425 619 153 51 0 chr4 977109 977227 -183311435 + MSTD LTR MaLR 273 396 0 470 301 164 14 chr4 977227 977519 -183311143 + L2 LINE L2 2315 2650 -664 252 296 58 64 chr4 977778 977950 -183310712 + L2 LINE L2 3142 3312 -1 249 325 44 26 chr4 978118 978232 -183310430 + L3 LINE CR1 332 447 -1130 187 250 0 0 chr4 978555 978599 -183310063 + L3 LINE CR1 410 453 -1124 342 188 75 25 chr4 978762 978842 -183309820 - L2 LINE L2 -37 3235 3152 337 294 59 13 chr4 979513 979666 -183308996 + L3 LINE CR1 1195 1354 -223 2239 112 3 32 chr4 979915 980228 -183308434 - AluSx SINE Alu -8 304 1 6002 222 82 70 chr4 980522 982154 -183306508 - MER52A LTR ERV1 0 1755 104 1056 203 121 4 chr4 982216 982472 -183306190 - MER52A LTR ERV1 -1469 286 1 470 261 85 71 chr4 982801 983012 -183305650 - MIR SINE MIR -21 241 28 198 0 0 0 chr4 983340 983362 -183305300 + (T)n Simple_repeat Simple_repeat 1 22 0 259 291 13 32 chr4 984443 984601 -183304061 + G-rich Low_complexity Low_complexity 3 157 0 * 297 222 16 60 chr4 984513 984784 -183303878 + (TGGG)n Simple_repeat Simple_repeat 1 259 0 199 337 36 0 chr4 984844 984927 -183303735 + MIR3 SINE MIR 114 199 -9 858 276 56 0 chr4 985685 985917 -183302745 + MIR SINE MIR 8 252 -10 429 308 19 30 chr4 986106 986369 -183302293 - L1MC5 LINE L1 -215 7746 7487 610 237 28 96 chr4 986880 987171 -183301491 - L1MC5 LINE L1 -844 7117 6847 413 304 55 55 chr4 987220 987437 -183301225 - L1MC4a LINE L1 -1137 6671 6455 14602 125 27 12 chr4 987457 989266 -183299396 - Tigger1 DNA MER2_type 0 2418 564 1838 144 34 27 chr4 989266 989558 -183299104 + AluJo SINE Alu 1 294 -18 14602 125 27 12 chr4 989558 990123 -183298539 - Tigger1 DNA MER2_type -1854 564 9 374 269 12 76 chr4 990245 990416 -183298246 - L1MC4a LINE L1 -1537 6271 6112 3171 227 111 48 chr4 990416 991264 -183297398 + L1MEc LINE L1 2179 2972 -3243 1606 145 0 9 chr4 991264 991492 -183297170 + AluSg/x SINE Alu 75 300 -12 3171 227 111 48 chr4 991492 991832 -183296830 + L1MEc LINE L1 2972 3289 -2926 1466 205 28 11 chr4 991832 992115 -183296547 + AluJb SINE Alu 1 288 -14 3171 227 111 48 chr4 992115 992454 -183296208 + L1MEc LINE L1 3289 3753 -2462 2223 98 16 16 chr4 992547 992852 -183295810 - AluSx SINE Alu -7 305 1 253 264 112 8 chr4 992876 993001 -183295661 - HAL1 LINE L1 -2280 227 90 587 275 104 40 chr4 993051 993361 -183295301 - L1MEd LINE L1 -4502 1627 1338 2523 68 6 6 chr4 993361 993672 -183294990 - AluY SINE Alu 0 311 1 587 275 104 40 chr4 993672 994252 -183294410 - L1MEd LINE L1 -4791 1338 692 35 41 0 0 chr4 1001696 1001745 -183286917 + GC_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr4 1003105 1003126 -183285536 + GC_rich Low_complexity Low_complexity 1 21 0 515 96 48 10 chr4 1003339 1003443 -183285219 + C-rich Low_complexity Low_complexity 1 108 0 181 238 71 0 chr4 1004103 1004145 -183284517 + MER5B DNA MER1_type 7 51 -127 382 216 104 8 chr4 1004160 1004285 -183284377 + L1MC4a LINE L1 6124 6260 -1548 1451 220 20 41 chr4 1004353 1004405 -183284257 - Charlie1 DNA MER1_type -6 2755 2703 1678 114 35 98 chr4 1004405 1004704 -183283958 + AluJb SINE Alu 1 281 -31 2277 110 0 0 chr4 1004704 1005003 -183283659 + AluSx SINE Alu 14 312 0 1678 114 35 98 chr4 1005003 1005019 -183283643 + AluJb SINE Alu 281 296 -16 1451 220 20 41 chr4 1005019 1005357 -183283305 - Charlie1 DNA MER1_type -58 2703 2373 333 191 0 31 chr4 1006868 1007202 -183281460 + (TTCA)n Simple_repeat Simple_repeat 1 323 0 524 130 0 53 chr4 1007226 1007395 -183281267 + (TTCA)n Simple_repeat Simple_repeat 3 162 0 242 303 45 8 chr4 1008941 1009073 -183279589 + L2 LINE L2 2837 2973 -340 6095 224 61 20 chr4 1009966 1011963 -183276699 + L1M4 LINE L1 9 2096 -4550 11524 136 77 9 chr4 1011972 1013475 -183275187 + L1M4c LINE L1 20 1724 -4660 1979 90 115 4 chr4 1013475 1013753 -183274909 + AluSq SINE Alu 1 309 -4 11524 136 77 9 chr4 1013753 1014455 -183274207 + L1M4c LINE L1 1724 2376 -4008 532 181 0 0 chr4 1014455 1014549 -183274113 - AluJ/FRAM SINE Alu -3 309 216 2641 192 30 3 chr4 1014662 1015229 -183273433 + L1MB3 LINE L1 5586 6167 -16 458 298 31 31 chr4 1015246 1015538 -183273124 - L1M4c LINE L1 -4144 2240 1949 2064 113 26 29 chr4 1015613 1015924 -183272738 + AluSx SINE Alu 1 310 -2 334 257 44 53 chr4 1015946 1016152 -183272510 + L1M4 LINE L1 2514 2717 -3929 4151 227 63 49 chr4 1016172 1017068 -183271594 + L1M4 LINE L1 2771 3653 -2991 1863 130 72 10 chr4 1017068 1017360 -183271302 + AluJb SINE Alu 1 310 -2 4151 227 63 49 chr4 1017360 1017400 -183271262 + L1M4 LINE L1 3653 3691 -2953 2289 103 0 7 chr4 1017400 1017701 -183270961 + AluY SINE Alu 1 299 -12 4151 227 63 49 chr4 1017701 1018305 -183270357 + L1M4 LINE L1 3691 4334 -2310 3189 221 25 30 chr4 1018310 1019190 -183269472 + L1M4 LINE L1 4642 5517 -1127 284 292 109 22 chr4 1019751 1019888 -183268774 + MIR3 SINE MIR 18 166 -42 251 326 34 14 chr4 1020714 1020861 -183267801 + (CA)n Simple_repeat Simple_repeat 1 150 0 226 307 12 42 chr4 1021294 1021460 -183267202 + G-rich Low_complexity Low_complexity 3 163 0 26 50 0 0 chr4 1021784 1021824 -183266838 + AT_rich Low_complexity Low_complexity 1 40 0 1082 219 26 0 chr4 1023196 1023429 -183265233 - MLT1E2 LTR MaLR 0 626 388 236 242 15 15 chr4 1023440 1023506 -183265156 - MLT1E1 LTR MaLR -530 124 59 2307 150 20 60 chr4 1023527 1023973 -183264689 - MSTC LTR MaLR 0 428 1 284 278 14 0 chr4 1024584 1024656 -183264006 + L2 LINE L2 2553 2625 -689 223 186 0 29 chr4 1024669 1024739 -183263923 + (TA)n Simple_repeat Simple_repeat 1 68 0 414 234 32 60 chr4 1024745 1024993 -183263669 - L1ME LINE L1 -404 5717 5416 1071 205 4 39 chr4 1026088 1026322 -183262340 + AluJb SINE Alu 74 299 -13 7040 107 25 21 chr4 1026325 1027565 -183261097 - HSMAR2 DNA Mariner -55 1247 3 195 100 0 0 chr4 1028219 1028249 -183260413 + (A)n Simple_repeat Simple_repeat 1 30 0 477 271 26 42 chr4 1028308 1028500 -183260162 + MIR SINE MIR 30 218 -44 2266 131 50 77 chr4 1029230 1029674 -183258988 + MSTB1 LTR MaLR 1 432 0 259 252 93 0 chr4 1030230 1030337 -183258325 - L2 LINE L2 -1 3312 3196 1214 207 29 19 chr4 1030603 1030912 -183257750 + MLT1B LTR MaLR 79 390 0 654 251 55 42 chr4 1030953 1031260 -183257402 - LTR37A LTR ERV1 -111 315 5 281 275 0 11 chr4 1032170 1032261 -183256401 - MLT1F1 LTR MaLR 0 567 478 345 315 0 0 chr4 1032434 1032612 -183256050 + C-rich Low_complexity Low_complexity 1 178 0 970 150 23 6 chr4 1035787 1035960 -183252702 - AluJo SINE Alu -125 187 12 297 284 68 34 chr4 1036253 1036401 -183252261 + MIR3 SINE MIR 21 173 -35 969 356 87 73 chr4 1037313 1037802 -183250860 + L1M4 LINE L1 2734 3215 -2931 1917 158 10 3 chr4 1037802 1038112 -183250550 + AluSx SINE Alu 1 312 0 969 356 87 73 chr4 1038112 1039151 -183249511 + L1M4 LINE L1 3215 4288 -1858 2111 120 7 0 chr4 1039151 1039459 -183249203 + AluSq SINE Alu 1 310 -3 969 356 87 73 chr4 1039459 1039549 -183249113 + L1M4 LINE L1 4288 4375 -1771 267 289 160 5 chr4 1040078 1040234 -183248428 + MIR SINE MIR 10 187 -72 2311 77 0 3 chr4 1041621 1041918 -183246744 - AluY SINE Alu -15 296 1 895 206 12 6 chr4 1041971 1042141 -183246521 - L1MB7 LINE L1 -10 6174 6004 328 270 0 63 chr4 1042316 1042442 -183246220 - MSTB1 LTR MaLR -314 118 1 266 133 0 0 chr4 1042486 1042531 -183246131 - MLT2A2 LTR ERVL -2 451 407 594 266 132 20 chr4 1042543 1042955 -183245707 - MLT-int LTR MaLR -381 1354 841 680 199 15 0 chr4 1043139 1043275 -183245387 + MLT1A1 LTR MaLR 227 364 -1 1595 265 54 17 chr4 1043299 1043904 -183244758 - L1MB7 LINE L1 -187 5997 5335 2158 112 0 3 chr4 1043904 1044207 -183244455 - AluSx SINE Alu -10 302 1 1595 265 54 17 chr4 1044207 1044275 -183244387 - L1MB7 LINE L1 -849 5335 5271 216 291 25 0 chr4 1048871 1048950 -183239712 + (CA)n Simple_repeat Simple_repeat 1 81 0 219 256 166 25 chr4 1050196 1050395 -183238267 + L2 LINE L2 2355 2581 -733 201 39 0 0 chr4 1051901 1051927 -183236735 + (A)n Simple_repeat Simple_repeat 1 26 0 186 266 0 0 chr4 1055354 1055433 -183233229 + (CA)n Simple_repeat Simple_repeat 2 80 0 240 355 58 11 chr4 1057728 1058153 -183230509 + L1ME LINE L1 1267 1877 -4954 2199 74 0 0 chr4 1058172 1058456 -183230206 + AluSg SINE Alu 11 294 -16 489 240 58 90 chr4 1058776 1059088 -183229574 + L1ME LINE L1 2759 3035 -3906 1532 179 29 18 chr4 1059088 1059212 -183229450 + AluJo SINE Alu 1 122 -190 195 42 0 0 chr4 1059212 1059236 -183229426 + (TAA)n Simple_repeat Simple_repeat 2 25 0 1532 179 29 18 chr4 1059236 1059390 -183229272 + AluJo SINE Alu 122 282 -30 489 240 58 90 chr4 1059390 1059519 -183229143 + L1ME LINE L1 3035 3167 -3774 433 275 89 59 chr4 1059511 1059747 -183228915 + L1ME LINE L1 4803 5045 -1896 * 556 235 67 0 chr4 1059747 1059866 -183228796 - FLAM_C SINE Alu -16 127 1 242 287 35 0 chr4 1059876 1059963 -183228699 + L1ME LINE L1 5075 5164 -1777 2122 113 20 0 chr4 1059963 1060256 -183228406 + AluSx SINE Alu 1 299 -13 633 129 20 0 chr4 1060256 1060357 -183228305 + AluSg/x SINE Alu 208 310 0 419 278 93 5 chr4 1060357 1060551 -183228111 + L1ME LINE L1 5177 5387 -1554 641 297 154 22 chr4 1060553 1061092 -183227570 + L1ME LINE L1 5420 6029 -912 552 282 114 16 chr4 1061219 1061592 -183227070 + L1ME LINE L1 6164 6594 -363 225 154 0 0 chr4 1061898 1061937 -183226725 + GA-rich Low_complexity Low_complexity 2 40 0 218 205 0 0 chr4 1063846 1063885 -183224777 + (CA)n Simple_repeat Simple_repeat 1 39 0 194 302 35 0 chr4 1063891 1063977 -183224685 + L2 LINE L2 3155 3243 -29 218 204 10 92 chr4 1064347 1064543 -183224119 + (TG)n Simple_repeat Simple_repeat 1 180 0 252 288 16 38 chr4 1067303 1067487 -183221175 + (TG)n Simple_repeat Simple_repeat 1 180 0 601 231 109 7 chr4 1072094 1072241 -183216421 - AluJb SINE Alu -10 302 141 23 0 0 0 chr4 1072315 1072338 -183216324 + AT_rich Low_complexity Low_complexity 1 23 0 2127 130 0 0 chr4 1072347 1072646 -183216016 - AluSx SINE Alu -9 303 5 432 315 46 5 chr4 1073856 1074072 -183214590 - MLT1J LTR MaLR -16 495 271 470 359 53 18 chr4 1075024 1075364 -183213298 - L1MD2 LINE L1 -444 5915 5564 308 236 101 0 chr4 1083983 1084072 -183204590 + L1MC3 LINE L1 7685 7782 -3 250 264 60 36 chr4 1085581 1085748 -183202914 + (CAGGG)n Simple_repeat Simple_repeat 4 174 0 252 245 40 20 chr4 1088796 1088947 -183199715 + (CG)n Simple_repeat Simple_repeat 1 154 0 246 184 37 59 chr4 1089029 1089165 -183199497 + (CCGCG)n Simple_repeat Simple_repeat 4 136 0 23 0 0 0 chr4 1089176 1089199 -183199463 + GC_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr4 1089283 1089303 -183199359 + (CGGGG)n Simple_repeat Simple_repeat 2 21 0 2212 116 0 3 chr4 1092146 1092448 -183196214 - AluSq SINE Alu -12 301 1 2091 155 112 4 chr4 1092542 1093007 -183195655 - L1MA8 LINE L1 -6 6285 5771 199 400 22 0 chr4 1093049 1093139 -183195523 + MIR SINE MIR 97 188 -74 1319 227 96 14 chr4 1093295 1093661 -183195001 - MSTD LTR MaLR 0 396 1 824 285 112 75 chr4 1093757 1094198 -183194464 + L1MEd LINE L1 332 756 -5660 935 120 0 0 chr4 1094198 1094323 -183194339 - FLAM_C SINE Alu -8 125 1 824 285 112 75 chr4 1094323 1095038 -183193624 + L1MEd LINE L1 756 1530 -4886 321 353 78 41 chr4 1095060 1095278 -183193384 + L1MEd LINE L1 1407 1632 -4794 704 244 73 23 chr4 1095285 1095563 -183193099 - MLT1E LTR MaLR -2 591 235 6056 211 92 56 chr4 1095789 1096221 -183192441 - L1MB3 LINE L1 -7 6176 5761 2627 100 28 17 chr4 1096221 1096581 -183192081 + THE1B LTR MaLR 1 364 0 6056 211 92 56 chr4 1096581 1096837 -183191825 - L1MB3 LINE L1 -422 5761 5516 192 97 0 0 chr4 1096837 1096868 -183191794 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6056 211 92 56 chr4 1096868 1096918 -183191744 - L1MB3 LINE L1 -667 5516 5469 1467 172 36 20 chr4 1096918 1097105 -183191557 - AluJo SINE Alu 0 312 117 225 0 0 0 chr4 1097105 1097130 -183191532 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 1467 172 36 20 chr4 1097130 1097245 -183191417 - AluJo SINE Alu -195 117 5 6056 211 92 56 chr4 1097245 1098855 -183189807 - L1MB3 LINE L1 -714 5469 3919 1705 164 42 0 chr4 1098855 1099141 -183189521 - AluJb SINE Alu -14 298 1 6056 211 92 56 chr4 1099141 1099157 -183189505 - L1MB3 LINE L1 -2264 3919 3905 1928 151 10 10 chr4 1099157 1099468 -183189194 - AluJo SINE Alu -1 311 1 6056 211 92 56 chr4 1099468 1100536 -183188126 - L1MB3 LINE L1 -2278 3905 2614 191 373 20 59 chr4 1100850 1101054 -183187608 - MIR SINE MIR -34 228 33 2015 226 28 67 chr4 1102060 1102485 -183186177 - L1MC/D LINE L1 -466 5776 5336 1907 178 36 0 chr4 1102485 1102817 -183185845 + MER2 DNA MER2_type 1 344 0 2015 226 28 67 chr4 1102817 1103511 -183185151 - L1MC/D LINE L1 -906 5336 4617 2122 104 0 4 chr4 1103511 1103825 -183184837 - AluSc SINE Alu 0 313 1 1791 171 0 16 chr4 1103825 1104130 -183184532 - AluJo SINE Alu -12 300 1 2015 226 28 67 chr4 1104130 1104207 -183184455 - L1MC/D LINE L1 -1534 4708 4630 2330 103 0 0 chr4 1104213 1104515 -183184147 - AluSq SINE Alu -11 302 1 1065 210 186 35 chr4 1104529 1104652 -183184010 + LTR54B LTR ERV1 1 104 -394 1582 176 29 0 chr4 1104652 1104950 -183183712 + AluJo SINE Alu 1 306 0 1065 210 186 35 chr4 1104950 1105225 -183183437 + LTR54B LTR ERV1 104 472 -26 624 151 123 0 chr4 1105225 1105331 -183183331 + FLAM_A SINE Alu 1 119 -14 1065 210 186 35 chr4 1105331 1105359 -183183303 + LTR54B LTR ERV1 472 494 -4 1621 181 7 11 chr4 1106088 1106375 -183182287 + AluJo SINE Alu 1 286 -26 5867 219 32 56 chr4 1106942 1107489 -183181173 - L1M4 LINE L1 -1449 4933 4374 7283 94 27 17 chr4 1107489 1108486 -183180176 - LTR13 LTR ERVK 0 1007 1 5867 219 32 56 chr4 1108486 1108601 -183180061 - L1M4 LINE L1 -2008 4374 4258 225 0 0 0 chr4 1108601 1108626 -183180036 + (TG)n Simple_repeat Simple_repeat 2 26 0 2210 80 0 7 chr4 1108626 1108913 -183179749 - AluSp SINE Alu -28 285 1 1581 191 3 16 chr4 1108916 1109219 -183179443 - AluJb SINE Alu -13 299 1 5867 219 32 56 chr4 1109219 1110080 -183178582 - L1M4 LINE L1 -2125 4257 3377 1640 143 108 7 chr4 1110080 1110359 -183178303 - AluJb SINE Alu -5 307 1 5867 219 32 56 chr4 1110359 1110542 -183178120 - L1M4 LINE L1 -3005 3377 3191 3400 56 2 43 chr4 1110542 1110944 -183177718 - L1PA8 LINE L1 -2 6170 5788 2403 79 0 13 chr4 1110944 1111259 -183177403 - AluY SINE Alu 0 311 1 3400 56 2 43 chr4 1111259 1111323 -183177339 - L1PA8 LINE L1 -384 5788 5723 5867 219 32 56 chr4 1111323 1111598 -183177064 - L1M4 LINE L1 -3191 3191 2997 2951 92 57 7 chr4 1111598 1112021 -183176641 - MLT2A1 LTR ERVL 0 444 1 5867 219 32 56 chr4 1112021 1112164 -183176498 - L1M4 LINE L1 -3385 2997 2852 1732 221 79 16 chr4 1112980 1114006 -183174656 - L1M4 LINE L1 -3473 2909 1723 * 2388 229 33 24 chr4 1114002 1114024 -183174638 + L1MB4 LINE L1 4685 4705 -1475 2265 83 7 3 chr4 1114024 1114325 -183174337 + AluY SINE Alu 1 302 -9 2388 229 33 24 chr4 1114325 1114929 -183173733 + L1MB4 LINE L1 4705 5337 -843 2162 93 35 0 chr4 1114929 1115219 -183173443 - AluSx SINE Alu -12 300 1 2388 229 33 24 chr4 1115219 1115709 -183172953 + L1MB4 LINE L1 5337 5821 -359 420 286 11 6 chr4 1115707 1115882 -183172780 + L1M4 LINE L1 2695 2870 -3276 * 1663 209 32 0 chr4 1115888 1116232 -183172430 + L1MB4 LINE L1 5826 6180 0 2036 256 72 1 chr4 1116410 1117307 -183171355 - L1MB5 LINE L1 -133 6041 5080 248 303 0 34 chr4 1117358 1117536 -183171126 + (CCGCT)n Simple_repeat Simple_repeat 2 173 0 * 297 179 0 77 chr4 1117458 1117861 -183170801 + CT-rich Low_complexity Low_complexity 1 372 0 262 276 10 20 chr4 1118271 1118369 -183170293 + L1M4c LINE L1 1233 1329 -5055 2768 43 0 20 chr4 1118369 1118720 -183169942 + L1PA5 LINE L1 5811 6154 0 1142 123 0 0 chr4 1118777 1118932 -183169730 + AluSx SINE Alu 1 155 -157 756 264 81 4 chr4 1118940 1119175 -183169487 + MER45B DNA AcHobo 244 496 -544 949 143 0 0 chr4 1119179 1119319 -183169343 + AluSx SINE Alu 148 287 -23 1532 296 77 0 chr4 1119373 1119957 -183168705 + MER45B DNA AcHobo 206 834 -206 303 151 43 158 chr4 1119958 1119984 -183168678 + MER45B DNA AcHobo 777 804 -777 2202 96 3 6 chr4 1119984 1120296 -183168366 + AluY SINE Alu 1 311 0 303 151 43 158 chr4 1120296 1120408 -183168254 + MER45B DNA AcHobo 804 899 -141 2010 89 37 0 chr4 1120412 1120531 -183168131 + AluSc SINE Alu 1 114 -203 188 0 74 0 chr4 1120531 1120558 -183168104 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2010 89 37 0 chr4 1120558 1120745 -183167917 + AluSc SINE Alu 114 317 0 638 121 0 0 chr4 1120751 1120842 -183167820 + AluSg/x SINE Alu 210 300 -12 1236 161 28 117 chr4 1120853 1121281 -183167381 + L1M1 LINE L1 5178 5579 -724 477 49 99 0 chr4 1122260 1122341 -183166321 + L1M1 LINE L1 5574 5662 -641 1498 140 0 9 chr4 1122625 1122868 -183165794 + AluJb SINE Alu 64 304 0 370 273 28 103 chr4 1123466 1123719 -183164943 + MER21B LTR ERV1 13 246 -617 686 263 64 11 chr4 1123805 1124122 -183164540 + MER21B LTR ERV1 466 806 -125 557 112 0 78 chr4 1124154 1124270 -183164392 + MER4D LTR ERV1 1 107 -796 3220 187 103 72 chr4 1124425 1125130 -183163532 - LTR28 LTR ERV1 -69 951 209 2436 68 0 7 chr4 1125130 1125437 -183163225 + AluY SINE Alu 1 305 -6 3220 187 103 72 chr4 1125437 1125653 -183163009 - LTR28 LTR ERV1 -811 209 1 * 3834 119 37 78 chr4 1125653 1126009 -183162653 + MER4D LTR ERV1 103 472 -400 2248 86 16 3 chr4 1126009 1126313 -183162349 - AluSc SINE Alu -1 308 1 3834 119 37 78 chr4 1126313 1126759 -183161903 + MER4D LTR ERV1 472 872 0 518 268 131 13 chr4 1127062 1127333 -183161329 + L1ME3 LINE L1 5862 6164 0 224 352 138 19 chr4 1129240 1129450 -183159212 + MIR SINE MIR 2 236 -26 674 178 23 23 chr4 1129561 1129690 -183158972 - AluJb SINE Alu -180 132 4 545 165 189 43 chr4 1130934 1131098 -183157564 - MER20 DNA MER1_type -31 188 1 1758 93 4 8 chr4 1131281 1131528 -183157134 - AluSx SINE Alu -3 309 64 1012 167 6 0 chr4 1131638 1131806 -183156856 + AluJb SINE Alu 133 301 -11 208 349 64 9 chr4 1132077 1132186 -183156476 + L3b LINE CR1 1271 1385 -198 248 137 20 0 chr4 1133186 1133237 -183155425 + G-rich Low_complexity Low_complexity 2 53 0 183 355 153 16 chr4 1133775 1133958 -183154704 + L2 LINE L2 1166 1373 -1941 1287 111 0 0 chr4 1134090 1134448 -183154214 + (G)n Simple_repeat Simple_repeat 1 359 0 184 261 68 57 chr4 1136948 1137036 -183151626 + L2 LINE L2 1891 1979 -1335 22 0 0 0 chr4 1137427 1137449 -183151213 + GC_rich Low_complexity Low_complexity 1 22 0 506 239 163 38 chr4 1139784 1139993 -183148669 - MER58 DNA MER1_type -2182 238 4 639 254 0 8 chr4 1141261 1141395 -183147267 + FLAM_A SINE Alu 2 134 -8 1092 128 6 28 chr4 1141503 1141682 -183146980 - AluSg/x SINE Alu -3 309 135 2190 103 3 0 chr4 1141682 1141974 -183146688 - AluY SINE Alu -18 293 1 2484 60 0 13 chr4 1141984 1142299 -183146363 - AluY SINE Alu 0 311 1 1358 214 30 4 chr4 1143275 1143546 -183145116 + AluJo SINE Alu 1 278 -34 194 307 227 56 chr4 1146442 1147028 -183141634 + L2 LINE L2 1796 2481 -833 258 353 88 20 chr4 1147329 1147533 -183141129 + L2 LINE L2 3092 3309 -4 212 330 113 0 chr4 1147977 1148083 -183140579 + L2 LINE L2 1461 1578 -1736 209 326 111 35 chr4 1148275 1148447 -183140215 + L2 LINE L2 1829 2013 -1301 793 308 101 38 chr4 1148452 1148644 -183140018 + L2 LINE L2 2127 2305 -1009 1543 190 11 0 chr4 1148644 1148954 -183139708 - AluJo SINE Alu 0 313 1 793 308 101 38 chr4 1148954 1149263 -183139399 + L2 LINE L2 2305 2661 -653 225 336 99 0 chr4 1149384 1149515 -183139147 + L2 LINE L2 2886 3029 -284 211 289 214 27 chr4 1149528 1149715 -183138947 + L2 LINE L2 2998 3219 -94 23 0 0 0 chr4 1149745 1149768 -183138894 + AT_rich Low_complexity Low_complexity 1 23 0 926 324 140 20 chr4 1150420 1151183 -183137479 + Charlie7 DNA MER1_type 371 1225 -1387 846 226 32 16 chr4 1151319 1151505 -183137157 + AluJo SINE Alu 123 311 -1 1285 234 72 37 chr4 1151607 1152065 -183136597 + L1MB7 LINE L1 3454 3927 -2219 434 163 0 12 chr4 1152065 1152145 -183136517 + MLT1A2 LTR MaLR 296 374 0 1665 236 168 27 chr4 1152155 1152256 -183136406 + L1MB7 LINE L1 5213 5298 -886 2203 68 3 20 chr4 1152256 1152552 -183136110 - AluY SINE Alu -20 291 1 1665 236 168 27 chr4 1152552 1152879 -183135783 + L1MB7 LINE L1 5298 5578 -606 2021 97 7 52 chr4 1152879 1153187 -183135475 + AluSc SINE Alu 1 294 -15 1665 236 168 27 chr4 1153187 1153583 -183135079 + L1MB7 LINE L1 5578 6184 0 195 167 28 28 chr4 1153667 1153739 -183134923 + (CAGGG)n Simple_repeat Simple_repeat 4 75 0 565 196 36 29 chr4 1153925 1154063 -183134599 + MER33 DNA MER1_type 27 165 -159 801 188 0 7 chr4 1154063 1154207 -183134455 - FLAM_C SINE Alu 0 143 1 2187 85 7 3 chr4 1154218 1154512 -183134150 - AluY SINE Alu -16 295 1 450 172 117 14 chr4 1154520 1154665 -183133997 + MER33 DNA MER1_type 157 316 -8 339 217 24 12 chr4 1154979 1155062 -183133600 - MER20 DNA MER1_type -135 84 1 311 274 263 5 chr4 1155151 1155337 -183133325 - L1ME LINE L1 -348 5818 5585 269 254 0 0 chr4 1155489 1155548 -183133114 + (CGTG)n Simple_repeat Simple_repeat 1 59 0 908 279 75 53 chr4 1155549 1156000 -183132662 - MLT2B1 LTR ERVL -58 462 2 316 227 31 0 chr4 1156009 1156106 -183132556 - L1ME LINE L1 -728 5436 5337 1162 176 0 10 chr4 1156106 1156305 -183132357 + AluSg/x SINE Alu 105 301 -11 1309 290 77 6 chr4 1156329 1156863 -183131799 - L1ME LINE L1 -850 5296 4725 1200 233 40 20 chr4 1156899 1157301 -183131361 - L1MB2 LINE L1 -1 6182 5787 1504 230 101 7 chr4 1157312 1157768 -183130894 - MLT2B2 LTR ERVL -15 500 2 1582 220 51 3 chr4 1157779 1158111 -183130551 - MER7A DNA MER2_type 0 346 1 411 236 126 8 chr4 1158111 1158227 -183130435 - L1MB2 LINE L1 -387 5784 5650 293 263 42 34 chr4 1158364 1158482 -183130180 - L1MB2 LINE L1 -706 5477 5359 227 120 250 10 chr4 1158583 1158683 -183129979 - L1MB2 LINE L1 -920 5226 5103 260 272 0 12 chr4 1158946 1159027 -183129635 - HAL1 LINE L1 -847 1660 1581 2177 108 7 3 chr4 1162163 1162468 -183126194 - AluSx SINE Alu -6 306 1 438 326 97 81 chr4 1162909 1163188 -183125474 + L1MEd LINE L1 561 834 -1664 1665 137 32 11 chr4 1163188 1163472 -183125190 + AluJo SINE Alu 1 290 -22 438 326 97 81 chr4 1163472 1163535 -183125127 + L1MEd LINE L1 834 895 -1603 1606 143 37 0 chr4 1163535 1163780 -183124882 + AluJb SINE Alu 35 288 -24 2063 90 35 7 chr4 1163786 1164076 -183124586 + AluSx SINE Alu 1 298 -14 438 326 97 81 chr4 1164076 1164593 -183124069 + L1MEd LINE L1 899 1523 -975 364 267 30 0 chr4 1164637 1164738 -183123924 - MER3 DNA MER1_type -76 133 30 487 301 65 38 chr4 1164745 1164931 -183123731 + L1MEd LINE L1 2320 2510 -3619 394 230 34 34 chr4 1166634 1166812 -183121850 + (CCCCAG)n Simple_repeat Simple_repeat 1 178 0 * 449 254 0 28 chr4 1166698 1166879 -183121783 + C-rich Low_complexity Low_complexity 4 179 0 1571 179 3 7 chr4 1168647 1168943 -183119719 + AluJo SINE Alu 1 295 -17 731 175 0 32 chr4 1169204 1169330 -183119332 + FRAM SINE Alu 38 159 -17 417 306 82 100 chr4 1169403 1170396 -183118266 + L1M4c LINE L1 800 1209 -1566 2282 81 0 0 chr4 1170396 1170693 -183117969 + AluY SINE Alu 1 297 -14 417 306 82 100 chr4 1170693 1171120 -183117542 + L1M4c LINE L1 1209 1642 -1133 2223 93 27 0 chr4 1172514 1172815 -183115847 - AluSc SINE Alu 0 309 1 23 110 0 0 chr4 1174561 1174661 -183114001 + GC_rich Low_complexity Low_complexity 1 100 0 1936 67 4 0 chr4 1180171 1180411 -183108251 - AluSg SINE Alu -69 241 1 1485 184 52 10 chr4 1182224 1182512 -183106150 + AluJo SINE Alu 1 300 -12 1802 159 3 20 chr4 1182843 1183144 -183105518 + AluJo SINE Alu 1 296 -16 209 269 60 18 chr4 1184745 1184912 -183103750 + (TCTCTG)n Simple_repeat Simple_repeat 4 177 0 235 294 49 12 chr4 1185699 1185862 -183102800 + (CGGGG)n Simple_repeat Simple_repeat 2 170 0 227 264 55 22 chr4 1188152 1188243 -183100419 - L1ME LINE L1 -450 5712 5619 1913 259 63 23 chr4 1188390 1188761 -183099901 - L1ME2 LINE L1 -8 6225 5870 2054 93 0 0 chr4 1188761 1189020 -183099642 - AluSc SINE Alu -50 259 1 1913 259 63 23 chr4 1189020 1189373 -183099289 - L1ME2 LINE L1 -363 5870 5472 1456 281 52 38 chr4 1189485 1190114 -183098548 - L1ME2 LINE L1 -942 5273 4631 1525 219 84 30 chr4 1190114 1190483 -183098179 - MLT1B LTR MaLR -1 389 1 1456 281 52 38 chr4 1190483 1190560 -183098102 - L1ME2 LINE L1 -1584 4631 4557 1843 88 0 4 chr4 1190588 1190826 -183097836 + AluSg SINE Alu 55 291 -19 710 274 81 27 chr4 1190828 1191237 -183097425 - L1ME2 LINE L1 -4603 1793 1363 2212 120 0 0 chr4 1191296 1191597 -183097065 + AluSx SINE Alu 1 301 -11 367 291 195 42 chr4 1191647 1191980 -183096682 - L2 LINE L2 -7 3306 2923 798 291 112 3 chr4 1192031 1192371 -183096291 - L2 LINE L2 -518 2796 2420 2163 79 0 0 chr4 1192399 1192676 -183095986 + AluSx SINE Alu 14 290 -22 259 396 7 21 chr4 1197745 1197889 -183090773 - MIR SINE MIR -20 242 101 25 0 0 0 chr4 1199246 1199271 -183089391 + AT_rich Low_complexity Low_complexity 1 25 0 437 215 47 0 chr4 1202241 1202348 -183086314 - LTR45 LTR ERV1 0 525 414 359 262 12 0 chr4 1202362 1202446 -183086216 - LTR45 LTR ERV1 -440 85 1 183 156 0 0 chr4 1207360 1207392 -183081270 + (TG)n Simple_repeat Simple_repeat 1 32 0 342 264 23 0 chr4 1207748 1207835 -183080827 - MER58A DNA MER1_type -18 89 1 315 0 0 0 chr4 1208358 1208393 -183080269 + (TG)n Simple_repeat Simple_repeat 2 36 0 1958 140 90 29 chr4 1208592 1208935 -183079727 - THE1B LTR MaLR 0 364 1 264 329 25 6 chr4 1209179 1209337 -183079325 - L1M4 LINE L1 -3772 2374 2214 318 398 59 5 chr4 1210103 1210289 -183078373 - HAL1 LINE L1 -838 1669 1474 2288 65 45 17 chr4 1210290 1210642 -183078020 - MLT2A1 LTR ERVL -69 375 14 755 280 0 11 chr4 1212163 1212352 -183076310 + MER5A DNA MER1_type 1 187 -2 1003 185 17 0 chr4 1212385 1212563 -183076099 + AluSg/x SINE Alu 130 310 0 199 330 11 34 chr4 1212884 1212972 -183075690 - MIR SINE MIR -157 105 20 506 157 24 0 chr4 1213073 1213156 -183075506 - AluJ/FRAM SINE Alu -8 304 220 300 424 8 4 chr4 1214059 1214302 -183074360 + MIR SINE MIR 8 251 -11 742 174 134 40 chr4 1214477 1214678 -183073984 + L1M4 LINE L1 5402 5621 -563 1024 144 0 0 chr4 1414707 1414853 -182873809 + AluJo/FRAM SINE Alu 131 276 -36 281 26 26 0 chr4 1414860 1414898 -182873764 + (TAA)n Simple_repeat Simple_repeat 2 40 0 2078 83 4 7 chr4 1414916 1415193 -182873469 + AluSx SINE Alu 26 301 -11 256 268 89 18 chr4 1419465 1419577 -182869085 - MLT1K LTR MaLR -2 586 467 274 282 39 0 chr4 1419654 1419732 -182868930 - MLT1K LTR MaLR -342 246 166 352 341 112 25 chr4 1419839 1420070 -182868592 + L2 LINE L2 2973 3239 -74 2080 127 10 0 chr4 1420070 1420403 -182868259 - AluSx SINE Alu 0 312 1 352 341 112 25 chr4 1420403 1420485 -182868177 + L2 LINE L2 3239 3313 0 635 215 6 0 chr4 1420485 1420657 -182868005 + (TGGA)n Simple_repeat Simple_repeat 2 174 0 790 208 6 1 chr4 1420682 1421383 -182867279 + (TGGA)n Simple_repeat Simple_repeat 1 704 0 972 200 9 5 chr4 1421416 1421862 -182866800 + (TGGA)n Simple_repeat Simple_repeat 1 448 0 426 304 93 20 chr4 1422221 1422468 -182866194 - L2 LINE L2 -205 3108 2844 334 273 161 14 chr4 1422561 1422847 -182865815 - L2 LINE L2 -739 2575 2248 205 188 0 42 chr4 1423516 1423564 -182865098 + G-rich Low_complexity Low_complexity 6 51 0 317 324 20 7 chr4 1425535 1425683 -182862979 + (TGGA)n Simple_repeat Simple_repeat 3 152 0 583 314 144 14 chr4 1426408 1426484 -182862178 - L1MC4a LINE L1 -1586 6222 6157 2061 138 7 0 chr4 1426484 1426788 -182861874 + AluJb SINE Alu 1 306 -6 583 314 144 14 chr4 1426788 1426988 -182861674 - L1MC4a LINE L1 -1651 6157 5910 678 292 33 30 chr4 1427134 1427435 -182861227 - L1MC4a LINE L1 -2209 5599 5298 1272 112 6 0 chr4 1427523 1427702 -182860960 - AluSg/x SINE Alu -15 297 118 474 114 0 0 chr4 1427702 1427772 -182860890 - Alu SINE Alu -9 303 234 1397 193 4 40 chr4 1477807 1477989 -182810673 - AluJo SINE Alu -13 299 129 2523 63 3 3 chr4 1477989 1478290 -182810372 + AluY SINE Alu 1 301 -10 1397 193 4 40 chr4 1478290 1478382 -182810280 - AluJo SINE Alu -183 129 35 266 278 81 40 chr4 1479211 1479384 -182809278 - L2 LINE L2 -179 3093 2914 1952 99 0 8 chr4 1479588 1479840 -182808822 + AluSg SINE Alu 55 304 -6 1799 119 0 4 chr4 1479907 1480160 -182808502 - AluSg SINE Alu -3 307 56 4535 77 0 13 chr4 1480191 1480448 -182808214 - LTR10C LTR ERV1 0 591 332 2408 75 0 13 chr4 1480448 1480755 -182807907 - AluY SINE Alu -8 303 1 4535 77 0 13 chr4 1480755 1481096 -182807566 - LTR10C LTR ERV1 -259 332 1 276 300 192 23 chr4 1481511 1481641 -182807021 - MIR SINE MIR -51 211 60 2170 89 7 33 chr4 1481705 1482007 -182806655 - AluSq SINE Alu -19 294 1 2120 129 0 0 chr4 1482548 1482835 -182805827 - AluSg SINE Alu -23 287 1 2403 98 0 3 chr4 1483705 1484011 -182804651 - AluY SINE Alu -6 305 1 2178 118 3 13 chr4 1484259 1484564 -182804098 - AluSx SINE Alu -10 302 1 23 0 0 0 chr4 1484682 1484705 -182803957 + AT_rich Low_complexity Low_complexity 1 23 0 852 187 177 5 chr4 1484785 1484983 -182803679 + AluSg/x SINE Alu 65 296 -13 693 148 0 43 chr4 1485021 1485136 -182803526 - AluSg/x SINE Alu -125 187 78 1359 152 9 5 chr4 1485136 1485347 -182803315 - AluSx SINE Alu -100 212 1 780 90 57 0 chr4 1485348 1485470 -182803192 - L1MA8 LINE L1 -47 6244 6116 345 278 86 48 chr4 1485483 1485522 -182803140 - L1M4 LINE L1 -813 5333 5297 2237 136 0 0 chr4 1485522 1485832 -182802830 - AluSx SINE Alu -2 310 1 1596 175 73 0 chr4 1485836 1486110 -182802552 - AluJb SINE Alu -18 294 1 345 278 86 48 chr4 1486110 1486274 -182802388 - L1M4 LINE L1 -851 5295 5117 1909 139 42 0 chr4 1486301 1486421 -182802241 + AluSx SINE Alu 1 115 -197 210 37 0 0 chr4 1486421 1486448 -182802214 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1909 139 42 0 chr4 1486448 1486614 -182802048 + AluSx SINE Alu 115 299 -13 314 371 59 8 chr4 1486811 1487067 -182801595 - L1MC4 LINE L1 -1006 7036 6768 822 177 15 0 chr4 1487113 1487243 -182801419 - AluSq/x SINE Alu -180 132 1 846 160 0 0 chr4 1487305 1487430 -182801232 + FLAM_C SINE Alu 1 125 -18 2264 85 3 0 chr4 1487434 1487729 -182800933 - AluSp SINE Alu -17 296 1 1824 144 34 0 chr4 1487861 1488152 -182800510 - AluJo SINE Alu -11 301 1 228 285 46 54 chr4 1488793 1488923 -182799739 - MIR SINE MIR -62 146 18 325 278 11 30 chr4 1489176 1489323 -182799339 - L1MC3 LINE L1 0 7783 6207 294 231 0 0 chr4 1489332 1489384 -182799278 - MLT1C LTR MaLR 0 467 416 372 328 87 18 chr4 1491409 1491638 -182797024 - L1MC4 LINE L1 -93 7949 7705 2055 82 43 4 chr4 1491655 1491935 -182796727 - AluSc SINE Alu -5 304 14 1110 153 16 0 chr4 1492908 1493098 -182795564 + AluJb SINE Alu 120 312 0 21 0 0 0 chr4 1493376 1493397 -182795265 + GC_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr4 1493933 1493962 -182794700 + GC_rich Low_complexity Low_complexity 1 29 0 315 196 9 103 chr4 1494045 1494152 -182794510 + MER53 DNA DNA 93 189 0 187 360 10 20 chr4 1494394 1494494 -182794168 - MIR SINE MIR -78 184 86 2050 97 20 17 chr4 1495116 1495415 -182793247 + AluSq SINE Alu 1 300 -13 263 224 40 13 chr4 1495522 1495598 -182793064 - MLT1K LTR MaLR -63 525 448 1364 187 128 8 chr4 1495992 1496434 -182792228 + MLT1H LTR MaLR 1 541 -8 196 162 54 0 chr4 1496928 1496965 -182791697 - MER5A DNA MER1_type -87 102 64 1294 147 9 0 chr4 1497110 1497321 -182791341 - AluJo SINE Alu -14 298 86 1436 176 56 18 chr4 1497466 1497632 -182791030 - AluJb SINE Alu -17 295 112 414 0 0 0 chr4 1497632 1497678 -182790984 + (TG)n Simple_repeat Simple_repeat 1 46 0 1436 176 56 18 chr4 1497678 1497795 -182790867 - AluJb SINE Alu -200 112 1 1661 166 0 35 chr4 1498089 1498402 -182790260 + AluJb SINE Alu 1 302 -10 2319 28 0 24 chr4 1498404 1498719 -182789943 + AluY SINE Alu 3 310 0 1799 80 0 16 chr4 1498918 1499167 -182789495 + AluSq SINE Alu 1 245 -68 23 0 0 0 chr4 1499903 1499926 -182788736 + GC_rich Low_complexity Low_complexity 1 23 0 363 235 0 24 chr4 1501198 1501283 -182787379 - MIR SINE MIR -76 132 50 386 267 80 13 chr4 1501525 1501675 -182786987 - MER106B DNA MER1_type -4 1055 896 185 182 164 0 chr4 1501706 1501761 -182786901 - L2 LINE L2 -18 3295 3232 10379 117 56 114 chr4 1501810 1501973 -182786689 + Tigger1 DNA MER2_type 26 197 -2221 2151 116 0 3 chr4 1501973 1502276 -182786386 - AluSx SINE Alu -10 302 1 10379 117 56 114 chr4 1502276 1503480 -182785182 + Tigger1 DNA MER2_type 197 1470 -948 765 125 0 97 chr4 1503480 1503624 -182785038 + FLAM_C SINE Alu 2 131 -12 10379 117 56 114 chr4 1503624 1503766 -182784896 + Tigger1 DNA MER2_type 1470 1619 -799 2265 80 3 0 chr4 1503766 1504065 -182784597 + AluY SINE Alu 3 302 -9 10379 117 56 114 chr4 1504065 1504111 -182784551 + Tigger1 DNA MER2_type 1619 1666 -752 1994 112 7 7 chr4 1504111 1504397 -182784265 + AluSx SINE Alu 8 293 -19 10379 117 56 114 chr4 1504397 1504535 -182784127 + Tigger1 DNA MER2_type 1666 1810 -608 1956 98 25 7 chr4 1504535 1504820 -182783842 + AluSg1 SINE Alu 1 290 -19 1550 141 0 34 chr4 1504829 1505091 -182783571 + AluSx SINE Alu 42 294 -18 2106 98 0 23 chr4 1505092 1505397 -182783265 + AluSg SINE Alu 1 298 -12 10379 117 56 114 chr4 1505397 1505739 -182782923 + Tigger1 DNA MER2_type 1818 2080 -338 2220 95 0 7 chr4 1505739 1506043 -182782619 + AluSp SINE Alu 1 302 -11 10379 117 56 114 chr4 1506043 1506165 -182782497 + Tigger1 DNA MER2_type 2080 2208 -210 1030 172 17 67 chr4 1506165 1506328 -182782334 - AluJo SINE Alu -13 299 129 243 0 0 0 chr4 1506328 1506355 -182782307 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2194 78 0 0 chr4 1506355 1506638 -182782024 - AluY SINE Alu -28 283 1 1030 172 17 67 chr4 1506638 1506711 -182781951 - AluJo SINE Alu -181 131 74 425 245 86 15 chr4 1506765 1506919 -182781743 - MIR SINE MIR -83 179 16 2151 99 10 3 chr4 1507388 1507691 -182780971 - AluSg SINE Alu -5 305 1 509 209 0 26 chr4 1507701 1507816 -182780846 - FAM SINE Alu -2 183 72 327 256 34 0 chr4 1507816 1507846 -182780816 - AluJo/F(R)AM SINE Alu -78 224 196 1640 128 0 0 chr4 1507846 1508081 -182780581 - AluSx SINE Alu -77 235 1 327 256 34 0 chr4 1508081 1508151 -182780511 - AluJo/F(R)AM SINE Alu -106 196 154 2135 112 52 60 chr4 1508151 1508304 -182780358 + THE1B LTR MaLR 1 154 -210 1998 136 3 0 chr4 1508304 1508598 -182780064 + AluSg SINE Alu 1 295 -15 2135 112 52 60 chr4 1508598 1508811 -182779851 + THE1B LTR MaLR 154 364 0 12088 89 8 6 chr4 1508811 1510389 -182778273 + THE1B-int LTR MaLR 1 1580 0 2317 92 66 20 chr4 1510389 1510737 -182777925 + THE1B LTR MaLR 1 364 0 1565 124 14 58 chr4 1510966 1511241 -182777421 - AluJb SINE Alu -49 263 1 2092 121 0 0 chr4 1511268 1511557 -182777105 - AluSx SINE Alu -9 303 15 1362 139 0 9 chr4 1512708 1512924 -182775738 - AluJb SINE Alu -14 298 85 360 335 54 6 chr4 1514067 1514234 -182774428 + L2 LINE L2 3139 3313 0 213 211 57 0 chr4 1514319 1514383 -182774279 - MIR SINE MIR -69 139 70 2048 125 0 0 chr4 1514523 1514811 -182773851 + AluSx SINE Alu 4 291 -21 566 139 73 73 chr4 1514828 1514912 -182773750 - FLAM_C SINE Alu -174 138 52 234 0 0 0 chr4 1514912 1514938 -182773724 + (C)n Simple_repeat Simple_repeat 1 26 0 566 139 73 73 chr4 1514938 1514990 -182773672 - FLAM_C SINE Alu -259 53 2 292 162 88 0 chr4 1515356 1515424 -182773238 + Tigger5 DNA MER2_type 2250 2323 0 188 355 81 17 chr4 1515647 1515819 -182772843 + L2 LINE L2 2569 2751 -563 185 289 289 0 chr4 1516601 1516691 -182771971 - L2 LINE L2 0 3313 3198 197 294 128 0 chr4 1516712 1516814 -182771848 - L2 LINE L2 -875 2439 2325 533 275 54 45 chr4 1516873 1517095 -182771567 + MIR SINE MIR 7 230 -32 1382 184 0 44 chr4 1518010 1518135 -182770527 - AluJb SINE Alu -53 259 130 2126 115 0 7 chr4 1518135 1518440 -182770222 - AluSx SINE Alu -1 311 9 1382 184 0 44 chr4 1518440 1518585 -182770077 - AluJb SINE Alu -182 130 1 1956 97 39 4 chr4 1519043 1519345 -182769317 + AluSx SINE Alu 1 312 0 555 279 60 44 chr4 1519476 1519661 -182769001 - MIR SINE MIR -6 256 64 1955 104 28 17 chr4 1519661 1519979 -182768683 - AluSq SINE Alu 0 313 1 555 279 60 44 chr4 1519979 1520044 -182768618 - MIR SINE MIR -198 64 2 282 206 404 22 chr4 1520320 1520456 -182768206 + MER5A DNA MER1_type 1 188 -1 1230 171 93 8 chr4 1521687 1521944 -182766718 + AluJo SINE Alu 1 279 -33 1286 155 5 0 chr4 1522103 1522316 -182766346 - AluSg/x SINE Alu -12 300 87 1878 117 57 0 chr4 1522317 1522600 -182766062 - AluSq SINE Alu -14 299 1 360 152 0 0 chr4 1522601 1522667 -182765995 - Alu SINE Alu -3 299 234 30 69 0 0 chr4 1723909 1723967 -182564695 + GC_rich Low_complexity Low_complexity 1 58 0 298 284 34 0 chr4 1724774 1724862 -182563800 + L2 LINE L2 3223 3313 0 330 221 147 30 chr4 1727577 1727711 -182560951 + MIR SINE MIR 14 160 -61 333 332 27 76 chr4 1729983 1730206 -182558456 - L1MCa LINE L1 -4002 2642 2431 280 281 21 0 chr4 1731240 1731336 -182557326 - MLT1C LTR MaLR -40 427 330 237 206 0 55 chr4 1731359 1731432 -182557230 - MLT1C LTR MaLR -222 152 84 1377 65 45 10 chr4 1733470 1733669 -182554993 + AluY SINE Alu 106 311 0 331 346 39 82 chr4 1736771 1737077 -182551585 - L1MCa LINE L1 -5062 1480 1188 767 124 0 0 chr4 1742651 1742756 -182545906 + AluJo/FLAM SINE Alu 6 110 -202 1552 70 0 0 chr4 1742758 1742945 -182545717 - AluSp SINE Alu -19 294 108 2120 130 0 0 chr4 1743208 1743508 -182545154 - AluJo SINE Alu -12 300 1 732 254 10 38 chr4 1745621 1745743 -182542919 + MLT1A1 LTR MaLR 163 278 -87 2394 61 3 0 chr4 1745743 1746038 -182542624 - AluY SINE Alu -15 296 1 732 254 10 38 chr4 1746038 1746124 -182542538 + MLT1A1 LTR MaLR 278 365 0 2124 114 7 3 chr4 1746692 1746999 -182541663 + AluSx SINE Alu 1 308 -4 211 367 8 0 chr4 1747315 1747443 -182541219 + (TG)n Simple_repeat Simple_repeat 1 129 0 1621 188 7 10 chr4 1747568 1747866 -182540796 + AluJo SINE Alu 3 299 -13 1962 120 0 0 chr4 1748469 1748744 -182539918 + AluSq SINE Alu 1 275 -38 543 227 0 0 chr4 1748749 1748877 -182539785 + G-rich Low_complexity Low_complexity 4 131 0 207 204 0 0 chr4 1748879 1748928 -182539734 + GA-rich Low_complexity Low_complexity 1 49 0 499 289 127 9 chr4 1749082 1749310 -182539352 + MLT1F1 LTR MaLR 32 286 -281 850 120 0 0 chr4 1751328 1751445 -182537217 + AluSg/x SINE Alu 174 290 -20 2276 94 0 0 chr4 1752069 1752376 -182536286 + AluY SINE Alu 1 307 -4 2010 144 0 10 chr4 1752419 1752554 -182536108 + AluJb SINE Alu 1 136 -176 2353 54 30 0 chr4 1752554 1752852 -182535810 + AluY SINE Alu 1 307 -4 2010 144 0 10 chr4 1752852 1753028 -182535634 + AluJb SINE Alu 136 309 -3 259 211 40 26 chr4 1754231 1754307 -182534355 + G-rich Low_complexity Low_complexity 3 79 0 224 254 42 14 chr4 1758438 1758509 -182530153 + MIR SINE MIR 111 183 -79 21 0 0 0 chr4 1759003 1759024 -182529638 + AT_rich Low_complexity Low_complexity 1 21 0 707 175 83 0 chr4 1759888 1760008 -182528654 + FLAM_C SINE Alu 2 131 -2 1038 255 163 12 chr4 1761455 1761878 -182526784 + MLT1D LTR MaLR 2 488 -17 328 233 17 58 chr4 1762010 1762130 -182526532 - LTR33 LTR ERVL -363 158 44 1946 127 7 0 chr4 1762493 1762776 -182525886 + AluSx SINE Alu 15 299 -13 2157 47 0 0 chr4 1763587 1763844 -182524818 - AluY SINE Alu -53 258 2 228 196 185 0 chr4 1770189 1770281 -182518381 - L2 LINE L2 -305 3008 2900 444 311 96 47 chr4 1770604 1770698 -182517964 + L1M4 LINE L1 2682 2770 -3376 2466 58 0 13 chr4 1770698 1771008 -182517654 + AluY SINE Alu 1 306 -5 444 311 96 47 chr4 1771008 1771266 -182517396 + L1M4 LINE L1 2770 3014 -3132 1820 169 0 7 chr4 1771266 1771567 -182517095 + AluJo SINE Alu 1 299 -13 444 311 96 47 chr4 1771567 1771915 -182516747 + L1M4 LINE L1 3014 3343 -2803 2312 93 0 6 chr4 1771915 1772226 -182516436 - AluSq SINE Alu -4 309 1 444 311 96 47 chr4 1772226 1772375 -182516287 + L1M4 LINE L1 3343 3679 -2467 240 333 70 34 chr4 1773168 1773582 -182515080 - L1M4c LINE L1 -2919 3463 3035 377 362 0 18 chr4 1773742 1773905 -182514757 + (TG)n Simple_repeat Simple_repeat 1 160 0 265 353 6 18 chr4 1773940 1774107 -182514555 + (TG)n Simple_repeat Simple_repeat 2 166 0 1214 238 18 13 chr4 1774343 1774651 -182514011 - MLT1B LTR MaLR -7 460 75 2127 120 0 3 chr4 1774656 1774956 -182513706 - AluSx SINE Alu -13 299 1 369 339 110 33 chr4 1774959 1775216 -182513446 - L1M4c LINE L1 -4841 1543 1288 895 205 0 0 chr4 1775774 1775940 -182512722 - AluJb SINE Alu -10 302 137 610 231 134 17 chr4 1775943 1776181 -182512481 - L1MB5 LINE L1 -27 6147 5882 453 267 48 0 chr4 1776367 1776532 -182512130 + MER58A DNA MER1_type 3 175 -49 225 114 0 0 chr4 1777063 1777098 -182511564 - Alu SINE Alu -62 71 37 2228 94 3 13 chr4 1778817 1779116 -182509546 + AluSp SINE Alu 1 296 -17 23 0 0 0 chr4 1779519 1779542 -182509120 + GC_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr4 1779737 1779760 -182508902 + GC_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr4 1779849 1779872 -182508790 + GC_rich Low_complexity Low_complexity 1 23 0 283 209 104 0 chr4 1781785 1781978 -182506684 + (CGGGG)n Simple_repeat Simple_repeat 1 213 0 237 159 29 14 chr4 1785570 1785639 -182503023 + G-rich Low_complexity Low_complexity 3 72 0 2252 89 16 0 chr4 1792115 1792290 -182496372 - AluSx SINE Alu -4 308 124 2132 86 0 4 chr4 1792290 1792569 -182496093 - AluY SINE Alu -13 298 21 2252 89 16 0 chr4 1792569 1792696 -182495966 - AluSx SINE Alu -188 124 1 444 247 12 29 chr4 1794816 1794986 -182493676 + GA-rich Low_complexity Low_complexity 5 171 0 202 35 0 0 chr4 1795015 1795044 -182493618 + L2 LINE L2 3028 3056 -216 22 35 0 0 chr4 1795942 1795971 -182492691 + AT_rich Low_complexity Low_complexity 1 29 0 188 67 33 0 chr4 1796580 1796610 -182492052 + (TA)n Simple_repeat Simple_repeat 2 32 0 303 28 0 0 chr4 1797084 1797120 -182491542 + (CA)n Simple_repeat Simple_repeat 1 36 0 23 0 0 0 chr4 1798666 1798689 -182489973 + GC_rich Low_complexity Low_complexity 1 23 0 201 159 0 0 chr4 1802644 1802688 -182485974 + C-rich Low_complexity Low_complexity 2 45 0 414 309 92 32 chr4 1805324 1805606 -182483056 - MER58B DNA MER1_type 0 341 43 206 341 143 0 chr4 1808133 1808224 -182480438 - MIR SINE MIR -51 211 108 24 53 0 0 chr4 1808985 1809023 -182479639 + GC_rich Low_complexity Low_complexity 1 38 0 25 0 0 0 chr4 1809360 1809385 -182479277 + GC_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr4 1809407 1809435 -182479227 + GC_rich Low_complexity Low_complexity 1 28 0 444 79 56 45 chr4 1813460 1813638 -182475024 + (TG)n Simple_repeat Simple_repeat 1 180 0 409 53 77 41 chr4 1813667 1813836 -182474826 + (TG)n Simple_repeat Simple_repeat 1 175 0 558 102 72 23 chr4 1813855 1814300 -182474362 + (TG)n Simple_repeat Simple_repeat 1 466 0 571 85 79 13 chr4 1814321 1814628 -182474034 + (TG)n Simple_repeat Simple_repeat 1 327 0 2167 120 0 0 chr4 1815029 1815328 -182473334 - AluSq SINE Alu -14 299 1 2138 92 7 26 chr4 1815337 1815641 -182473021 - AluSg SINE Alu -12 298 1 2246 104 3 3 chr4 1815782 1816091 -182472571 + AluSx SINE Alu 2 310 -2 210 206 15 84 chr4 1816479 1816610 -182472052 + (CACGC)n Simple_repeat Simple_repeat 2 123 0 274 223 170 0 chr4 1816769 1816881 -182471781 - MLT1A1 LTR MaLR -126 441 311 2334 68 0 7 chr4 1819567 1819863 -182468799 - AluY SINE Alu -17 294 1 27 0 0 0 chr4 1819873 1819900 -182468762 + AT_rich Low_complexity Low_complexity 1 27 0 2079 110 0 32 chr4 1819934 1820244 -182468418 - AluY SINE Alu -11 300 1 1189 211 32 26 chr4 1821603 1821915 -182466747 - MLT1A1 LTR MaLR -48 317 4 1940 110 52 0 chr4 1821939 1822230 -182466432 + AluSq SINE Alu 1 306 -7 1358 179 44 4 chr4 1822266 1822518 -182466144 + AluJb SINE Alu 27 288 -24 2090 88 27 7 chr4 1822532 1822826 -182465836 + AluY SINE Alu 1 300 -11 222 275 0 43 chr4 1822834 1822903 -182465759 + L2 LINE L2 1127 1192 -2122 377 293 60 0 chr4 1823775 1823954 -182464708 + L1MD1 LINE L1 5763 5967 -275 1582 149 0 71 chr4 1823972 1824128 -182464534 + AluJo SINE Alu 1 124 -188 2116 120 7 0 chr4 1824128 1824429 -182464233 + AluSq SINE Alu 5 307 -6 1582 149 0 71 chr4 1824429 1824594 -182464068 + AluJo SINE Alu 124 299 -13 2218 181 5 74 chr4 1824591 1824840 -182463822 + L1M4 LINE L1 5272 5464 -720 2014 93 24 17 chr4 1824840 1825131 -182463531 + AluY SINE Alu 1 293 -18 2218 181 5 74 chr4 1825131 1825435 -182463227 + L1M4 LINE L1 5464 5787 -397 321 312 48 0 chr4 1825466 1825591 -182463071 + MER3 DNA MER1_type 1 131 -78 832 144 0 14 chr4 1825614 1825753 -182462909 + AluJo SINE Alu 1 137 -175 615 236 59 74 chr4 1826048 1826319 -182462343 + L1MC5 LINE L1 7603 7869 -92 2151 122 0 3 chr4 1826623 1826935 -182461727 + AluSx SINE Alu 1 311 -1 2189 101 0 19 chr4 1826960 1827267 -182461395 + AluSx SINE Alu 1 301 -11 1002 151 6 0 chr4 1827273 1827439 -182461223 + AluSg/x SINE Alu 140 306 -6 547 156 249 4 chr4 1827756 1827906 -182460756 + L1PA16 LINE L1 5997 6150 -16 227 83 0 0 chr4 1827903 1827939 -182460723 + L1PA16 LINE L1 6115 6150 -16 * 227 83 0 0 chr4 1828002 1828038 -182460624 + L1PA16 LINE L1 6115 6150 -16 227 83 0 0 chr4 1828067 1828103 -182460559 + L1PA16 LINE L1 6115 6150 -16 227 83 0 0 chr4 1828226 1828262 -182460400 + L1PA16 LINE L1 6115 6150 -16 323 77 0 19 chr4 1828325 1828377 -182460285 + L1PA16 LINE L1 6115 6165 -1 1823 124 27 17 chr4 1828647 1828775 -182459887 + AluSx SINE Alu 1 126 -186 2325 93 0 0 chr4 1828775 1829076 -182459586 + AluSg SINE Alu 1 301 -9 1823 124 27 17 chr4 1829076 1829245 -182459417 + AluSx SINE Alu 126 301 -11 2204 78 7 0 chr4 1830074 1830367 -182458295 - AluSx SINE Alu -17 295 1 364 308 134 32 chr4 1831538 1831785 -182456877 + HAL1 LINE L1 806 1077 -1430 252 216 51 57 chr4 1832783 1832959 -182455703 + (CCCCAG)n Simple_repeat Simple_repeat 3 177 0 211 225 39 77 chr4 1833101 1833283 -182455379 + (CCCCAG)n Simple_repeat Simple_repeat 3 177 0 257 225 62 38 chr4 1833340 1833500 -182455162 + (CCCCAG)n Simple_repeat Simple_repeat 1 164 0 262 160 147 0 chr4 1833825 1833900 -182454762 + L1MC4 LINE L1 6828 6913 -1129 204 311 0 17 chr4 1834131 1834311 -182454351 + (CCCA)n Simple_repeat Simple_repeat 4 180 0 439 295 156 19 chr4 1834391 1834683 -182453979 + L1MC4a LINE L1 7050 7421 -387 2213 112 0 10 chr4 1834683 1834996 -182453666 - AluSx SINE Alu -2 310 1 439 295 156 19 chr4 1834996 1835133 -182453529 + L1MC4a LINE L1 7421 7538 -270 2066 103 0 7 chr4 1835374 1835664 -182452998 + AluSc SINE Alu 1 288 -21 1436 228 45 75 chr4 1835952 1836309 -182452353 - MLT1C LTR MaLR -14 453 112 2291 91 0 0 chr4 1836309 1836605 -182452057 + AluY SINE Alu 1 296 -15 1436 228 45 75 chr4 1836605 1836711 -182451951 - MLT1C LTR MaLR -355 112 4 216 246 49 0 chr4 1836971 1837032 -182451630 - L2 LINE L2 -244 3069 3006 1173 196 21 60 chr4 1838036 1838424 -182450238 - MLT1C LTR MaLR -21 369 3 1524 127 0 0 chr4 1839664 1839884 -182448778 + AluSg/x SINE Alu 79 298 -12 2190 210 33 48 chr4 1839885 1840013 -182448649 + L1MC1 LINE L1 4648 4776 -1370 1220 205 110 0 chr4 1840013 1840276 -182448386 + AluJo SINE Alu 3 294 -18 2190 210 33 48 chr4 1840276 1840461 -182448201 + L1MC1 LINE L1 4776 4962 -1184 2092 127 0 0 chr4 1840461 1840753 -182447909 + AluSx SINE Alu 1 292 -20 2190 210 33 48 chr4 1840753 1841106 -182447556 + L1MC1 LINE L1 4962 5305 -841 1439 123 5 9 chr4 1841108 1841328 -182447334 + AluSg/x SINE Alu 85 303 -9 2184 90 17 0 chr4 1841328 1841628 -182447034 + AluSq SINE Alu 1 305 -8 1792 114 95 0 chr4 1841687 1841960 -182446702 + AluSx SINE Alu 1 299 -13 2377 69 7 0 chr4 1841962 1842266 -182446396 + AluSp SINE Alu 3 308 -5 3380 171 57 26 chr4 1842272 1843008 -182445654 + L1MC1 LINE L1 5431 6257 -76 1657 134 0 4 chr4 1843024 1843271 -182445391 - AluSq SINE Alu -20 293 48 252 65 0 0 chr4 1843271 1843302 -182445360 - LTR13 LTR ERVK -2 1005 975 414 133 0 0 chr4 1843303 1843363 -182445299 - AluJ/FLAM SINE Alu -252 60 1 1491 127 0 25 chr4 1843487 1843724 -182444938 - AluJb SINE Alu -81 231 1 241 284 47 112 chr4 1843840 1844072 -182444590 + MIR SINE MIR 16 232 -30 2318 94 0 0 chr4 1844174 1844483 -182444179 - AluSc SINE Alu 0 309 1 701 93 28 0 chr4 1845344 1845452 -182443210 - HY1 scRNA scRNA -1 111 1 232 185 59 25 chr4 1846248 1846367 -182442295 + (CCG)n Simple_repeat Simple_repeat 1 123 0 2252 75 19 7 chr4 1847960 1848268 -182440394 + AluSq SINE Alu 1 312 -1 256 226 12 0 chr4 1848543 1848611 -182440051 - MIR SINE MIR -59 149 94 1109 175 137 0 chr4 1848895 1849157 -182439505 + L1MB5 LINE L1 5877 6174 0 2265 101 0 0 chr4 1849164 1849471 -182439191 + AluSg SINE Alu 1 307 -3 348 205 0 12 chr4 1849628 1849711 -182438951 - L1M4 LINE L1 -3541 2605 2524 2429 62 0 3 chr4 1849711 1850018 -182438644 - AluY SINE Alu -3 308 3 2028 222 83 54 chr4 1850020 1850057 -182438605 - L1M4 LINE L1 -945 5201 5167 1769 142 0 68 chr4 1850057 1850228 -182438434 - AluJo SINE Alu -10 302 121 207 0 0 0 chr4 1850228 1850251 -182438411 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1998 98 29 0 chr4 1850251 1850528 -182438134 - AluSp SINE Alu -28 285 1 2069 111 10 0 chr4 1850535 1850832 -182437830 - AluSp SINE Alu -13 300 1 1769 142 0 68 chr4 1850832 1850975 -182437687 - AluJo SINE Alu -196 116 1 2028 222 83 54 chr4 1850975 1851247 -182437415 - L1M4 LINE L1 -979 5167 4904 2418 72 3 0 chr4 1851247 1851554 -182437108 - AluY SINE Alu -3 308 1 2028 222 83 54 chr4 1851554 1851861 -182436801 - L1M4 LINE L1 -1242 4904 4607 2087 115 3 3 chr4 1851861 1852157 -182436505 - AluSx SINE Alu -15 297 2 2252 90 7 0 chr4 1852166 1852465 -182436197 - AluSp SINE Alu -12 301 1 2028 222 83 54 chr4 1852465 1852610 -182436052 - L1M4 LINE L1 -1546 4600 4406 201 74 0 0 chr4 1852717 1852744 -182435918 + (CA)n Simple_repeat Simple_repeat 1 27 0 1495 135 41 4 chr4 1853178 1853423 -182435239 + AluSx SINE Alu 1 254 -58 2043 125 16 0 chr4 1854266 1854571 -182434091 + AluSp SINE Alu 1 310 -3 2030 132 0 0 chr4 1855991 1856286 -182432376 - AluSx SINE Alu -16 296 2 2096 125 3 0 chr4 1856292 1856595 -182432067 - AluSx SINE Alu -8 304 1 1799 119 81 0 chr4 1857422 1857707 -182430955 + AluSg SINE Alu 1 308 -2 184 67 0 67 chr4 1857825 1857870 -182430792 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 714 191 23 23 chr4 1858367 1858498 -182430164 + FLAM_C SINE Alu 3 133 0 2147 107 3 0 chr4 1858520 1858820 -182429842 + AluSx SINE Alu 1 301 -11 1467 169 0 8 chr4 1858833 1859088 -182429574 + AluSx SINE Alu 55 307 -5 2110 105 7 3 chr4 1859088 1859392 -182429270 + AluSx SINE Alu 1 306 -6 25 0 0 0 chr4 1859424 1859449 -182429213 + AT_rich Low_complexity Low_complexity 1 25 0 2117 86 10 10 chr4 1859459 1859749 -182428913 + AluSp SINE Alu 1 290 -23 1223 178 53 76 chr4 1859758 1859980 -182428682 + AluJo SINE Alu 2 217 -95 1658 123 100 0 chr4 1859980 1860241 -182428421 + AluSg SINE Alu 1 287 -23 1223 178 53 76 chr4 1860241 1860322 -182428340 + AluJo SINE Alu 217 298 -14 2109 110 0 0 chr4 1860390 1860682 -182427980 - AluY SINE Alu -19 292 1 1546 172 46 11 chr4 1860692 1860977 -182427685 - AluJo SINE Alu -17 295 1 1073 232 84 62 chr4 1862085 1862463 -182426199 - MER119 DNA MER1_type -64 519 128 1467 171 23 37 chr4 1862463 1862762 -182425900 - AluJo SINE Alu -17 295 1 1073 232 84 62 chr4 1862762 1862822 -182425840 - MER119 DNA MER1_type -455 128 71 379 224 10 31 chr4 1862868 1862966 -182425696 + MER105 DNA DNA 66 161 -43 2288 81 3 3 chr4 1863032 1863340 -182425322 - AluSp SINE Alu 0 313 6 2099 131 0 0 chr4 1863523 1863829 -182424833 + AluSx SINE Alu 1 306 -6 2154 91 34 0 chr4 1864863 1865159 -182423503 + AluSg SINE Alu 1 306 -4 721 181 129 23 chr4 1865244 1865415 -182423247 - MER5A DNA MER1_type 0 189 1 707 163 7 71 chr4 1865685 1865826 -182422836 + AluJo SINE Alu 5 136 -176 2135 120 3 0 chr4 1866826 1867127 -182421535 - AluSp SINE Alu -9 304 3 917 188 33 0 chr4 1867713 1867894 -182420768 + AluJb SINE Alu 103 289 -23 1696 140 21 11 chr4 1867913 1868198 -182420464 + AluSx SINE Alu 10 297 -15 1518 136 19 76 chr4 1868434 1868751 -182419911 + AluSx SINE Alu 9 307 -5 1760 107 80 50 chr4 1868755 1868840 -182419822 + AluSx SINE Alu 3 84 -228 2784 13 0 0 chr4 1868840 1869153 -182419509 + AluYb8 SINE Alu 1 313 -5 1760 107 80 50 chr4 1869153 1869366 -182419296 + AluSx SINE Alu 84 310 -2 1720 143 10 31 chr4 1869518 1869657 -182419005 + AluSg SINE Alu 1 141 -169 2280 99 0 0 chr4 1869657 1869959 -182418703 + AluSg SINE Alu 6 307 -3 1720 143 10 31 chr4 1869959 1870112 -182418550 + AluSg SINE Alu 141 287 -23 223 260 61 21 chr4 1870693 1870837 -182417825 - L2 LINE L2 -363 2951 2732 1467 86 15 0 chr4 1870915 1871113 -182417549 - AluSp SINE Alu -6 307 107 3318 90 96 29 chr4 1871113 1871467 -182417195 + LTR14 LTR ERVK 2 402 -146 2296 71 10 0 chr4 1871467 1871764 -182416898 - AluY SINE Alu -11 300 1 3318 90 96 29 chr4 1871764 1871922 -182416740 + LTR14 LTR ERVK 402 548 0 825 97 0 0 chr4 1871922 1872035 -182416627 - AluSp SINE Alu -200 113 1 535 268 153 25 chr4 1872037 1872284 -182416378 + L2 LINE L2 2192 2503 -811 2278 119 112 52 chr4 1872284 1872624 -182416038 - MER4C LTR ERV1 0 465 92 2251 100 0 3 chr4 1872624 1872933 -182415729 + AluSx SINE Alu 1 308 -4 2278 119 112 52 chr4 1872933 1873030 -182415632 - MER4C LTR ERV1 -373 92 2 535 268 153 25 chr4 1873030 1873148 -182415514 + L2 LINE L2 2503 2604 -710 255 196 41 31 chr4 1874036 1874133 -182414529 + (CAGGG)n Simple_repeat Simple_repeat 4 101 0 27 49 0 0 chr4 1874206 1874247 -182414415 + GC_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chr4 1874445 1874467 -182414195 + GC_rich Low_complexity Low_complexity 1 22 0 282 212 0 30 chr4 1874768 1874834 -182413828 + MLT1F1 LTR MaLR 504 567 0 356 133 13 67 chr4 1875450 1875472 -182413190 + MER49 LTR ERV1 1 23 -900 2011 108 35 0 chr4 1875472 1875759 -182412903 + AluSp SINE Alu 1 297 -16 356 133 13 67 chr4 1875759 1875811 -182412851 + MER49 LTR ERV1 23 71 -852 * 997 125 54 6 chr4 1875810 1875978 -182412684 + MER49 LTR ERV1 221 396 -527 667 181 22 58 chr4 1875979 1876117 -182412545 + AluJo/FLAM SINE Alu 1 133 -179 1912 149 3 3 chr4 1876117 1876412 -182412250 + AluJo SINE Alu 1 295 -17 1619 124 45 30 chr4 1876417 1876823 -182411839 + MER49 LTR ERV1 391 859 -64 751 90 20 0 chr4 1876829 1876929 -182411733 - AluSg/x SINE Alu -20 289 188 216 254 18 0 chr4 1877013 1877068 -182411594 + L2 LINE L2 3209 3264 -8 474 171 51 0 chr4 1880894 1881011 -182407651 + L1MC4 LINE L1 6889 7011 -1031 1775 78 130 11 chr4 1881129 1881399 -182407263 + AluSc SINE Alu 1 302 -7 21 0 0 0 chr4 1882724 1882745 -182405917 + GC_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr4 1882780 1882809 -182405853 + GC_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr4 1882826 1882851 -182405811 + GC_rich Low_complexity Low_complexity 1 25 0 226 149 0 21 chr4 1883465 1883512 -182405150 + (CCCCG)n Simple_repeat Simple_repeat 3 48 0 191 262 0 0 chr4 1884129 1884171 -182404491 + L2 LINE L2 2430 2471 -843 2258 76 0 13 chr4 1885738 1886041 -182402621 - AluY SINE Alu -12 299 1 1373 70 0 16 chr4 1886149 1886335 -182402327 - AluY SINE Alu -2 309 127 977 155 7 0 chr4 1886541 1886696 -182401966 - AluJb SINE Alu -23 289 134 2284 82 7 3 chr4 1886696 1887001 -182401661 - AluSp SINE Alu -7 306 1 665 215 20 51 chr4 1888517 1888617 -182400045 + MER54B LTR ERVL 494 587 -206 2149 103 10 13 chr4 1888617 1888928 -182399734 + AluSq SINE Alu 2 311 -2 665 215 20 51 chr4 1888928 1889022 -182399640 + MER54B LTR ERVL 587 682 -111 717 191 106 11 chr4 1889235 1889423 -182399239 + MER54A LTR ERVL 669 874 -27 6371 112 52 20 chr4 1890997 1891765 -182396897 - LTR13 LTR ERVK 0 1007 200 2249 72 10 7 chr4 1891765 1892069 -182396593 - AluY SINE Alu -5 306 2 6371 112 52 20 chr4 1892069 1892276 -182396386 - LTR13 LTR ERVK -807 200 1 2038 116 14 0 chr4 1893374 1893667 -182394995 - AluSx SINE Alu -15 297 1 1565 267 107 2 chr4 1894438 1895019 -182393643 - L1MB7 LINE L1 -265 5919 5278 1575 173 35 35 chr4 1895107 1895419 -182393243 + AluJo SINE Alu 1 312 0 2288 105 3 0 chr4 1895429 1895734 -182392928 + AluSx SINE Alu 1 306 -6 2183 118 0 0 chr4 1895925 1896221 -182392441 - AluSx SINE Alu -16 296 1 536 186 31 0 chr4 1896241 1896338 -182392324 + AluJo SINE Alu 38 137 -175 324 206 0 0 chr4 1896339 1896407 -182392255 - L1MB7 LINE L1 -1116 5030 4963 1114 175 113 0 chr4 1896409 1896638 -182392024 - AluJb SINE Alu -16 296 42 324 233 186 0 chr4 1896707 1896836 -182391826 + MER20 DNA MER1_type 2 154 -65 2152 117 10 0 chr4 1897873 1898182 -182390480 + AluSx SINE Alu 1 312 0 672 238 58 0 chr4 1898184 1898356 -182390306 + MER58A DNA MER1_type 2 183 -41 2029 126 3 3 chr4 1898356 1898657 -182390005 + AluSx SINE Alu 1 301 -11 2592 150 38 10 chr4 1900262 1900755 -182387907 - LTR10A LTR ERV1 -21 612 58 2123 94 3 7 chr4 1900755 1901054 -182387608 + AluY SINE Alu 1 298 -13 2592 150 38 10 chr4 1901054 1901114 -182387548 - LTR10A LTR ERV1 -575 58 1 273 206 0 0 chr4 1901525 1901622 -182387040 + C-rich Low_complexity Low_complexity 3 99 0 957 178 0 12 chr4 1903677 1903846 -182384816 + AluJb SINE Alu 141 307 -5 1026 179 11 5 chr4 1904259 1904273 -182384389 + AluSg/x SINE Alu 118 130 -179 1902 115 22 0 chr4 1904273 1904543 -182384119 + AluSx SINE Alu 27 302 -10 1026 179 11 5 chr4 1904543 1904712 -182383950 + AluSg/x SINE Alu 130 302 -7 1982 112 22 0 chr4 1904719 1904997 -182383665 + AluSc SINE Alu 14 297 -12 2302 101 0 0 chr4 1904999 1905305 -182383357 + AluSg SINE Alu 3 308 -2 20407 32 18 0 chr4 1957181 1960292 -182328370 - L1PA4 LINE L1 -246 5909 2746 399 284 11 16 chr4 1960293 1960476 -182328186 + L1MEc LINE L1 2040 2221 -4175 5876 181 40 17 chr4 1960624 1961497 -182327165 - L1MC3 LINE L1 -13 7772 6860 243 0 0 0 chr4 1961497 1961524 -182327138 + (TG)n Simple_repeat Simple_repeat 1 27 0 5876 181 40 17 chr4 1961524 1961906 -182326756 - L1MC3 LINE L1 -925 6860 6488 22 0 0 0 chr4 1961965 1961987 -182326675 + AT_rich Low_complexity Low_complexity 1 22 0 1767 143 3 21 chr4 1962022 1962308 -182326354 - AluJb SINE Alu -31 281 1 419 266 32 19 chr4 1962472 1962626 -182326036 + L1M4 LINE L1 5 160 -6382 701 168 8 46 chr4 1962634 1962765 -182325897 + FLAM_C SINE Alu 5 130 -3 2172 83 0 3 chr4 1962792 1963093 -182325569 + AluY SINE Alu 1 300 -11 1003 110 26 0 chr4 1963316 1963470 -182325192 - AluSx SINE Alu -154 158 1 666 142 130 35 chr4 1963470 1963639 -182325023 - L1M4 LINE L1 -1483 4663 4479 1029 141 56 5 chr4 1963642 1963840 -182324822 + AluJo SINE Alu 13 220 -92 288 146 0 36 chr4 1963840 1963895 -182324767 + FLAM_A SINE Alu 85 131 -2 872 255 60 3 chr4 1963896 1964198 -182324464 - L1M4 LINE L1 -1661 4485 4167 2129 94 3 0 chr4 1964227 1964513 -182324149 + AluSq SINE Alu 1 287 -26 1539 82 0 0 chr4 1964513 1964709 -182323953 + AluSq SINE Alu 79 274 -39 236 250 98 0 chr4 1964739 1964831 -182323831 - L1M4 LINE L1 -1497 4649 4549 1089 144 17 0 chr4 1964913 1965086 -182323576 - AluSg/x SINE Alu -16 296 121 731 120 0 17 chr4 1965087 1965204 -182323458 - AluSg/x SINE Alu -22 288 174 1429 115 23 0 chr4 1965206 1965424 -182323238 - AluSx SINE Alu -89 223 1 624 171 31 8 chr4 1965435 1965564 -182323098 - FLAM_C SINE Alu -1 132 1 919 180 208 12 chr4 1965566 1965821 -182322841 - AluJo SINE Alu -7 305 1 455 366 119 12 chr4 1965840 1966176 -182322486 - L1M4 LINE L1 -1712 4434 4063 549 109 9 118 chr4 1966186 1966296 -182322366 - FLAM_C SINE Alu -16 127 30 325 322 68 25 chr4 1966338 1966574 -182322088 - L1M4 LINE L1 -2125 4021 3776 1318 193 83 20 chr4 1966574 1966922 -182321740 - MER96B DNA MER1_type? 0 417 48 252 242 83 38 chr4 1966902 1967034 -182321628 + MER96B DNA MER1_type? 280 417 0 * 2092 77 10 13 chr4 1967152 1967450 -182321212 - AluY SINE Alu -14 297 1 381 275 46 114 chr4 1967644 1967844 -182320818 - L1ME LINE L1 -5708 362 185 1946 119 11 0 chr4 1967844 1968130 -182320532 + AluSx SINE Alu 9 297 -15 381 275 46 114 chr4 1968130 1968209 -182320453 - L1ME LINE L1 -5885 185 102 650 245 47 62 chr4 1968266 1968289 -182320373 - L1M4 LINE L1 -2103 4043 4021 1653 77 52 3 chr4 1968289 1968575 -182320087 - AluY SINE Alu -11 300 1 650 245 47 62 chr4 1968575 1968890 -182319772 - L1M4 LINE L1 -2125 4021 3710 2001 96 23 3 chr4 1969070 1969373 -182319289 + AluSc SINE Alu 1 309 0 305 251 187 49 chr4 1969515 1969764 -182318898 + MER110 LTR ERV1 97 343 -134 1410 143 24 0 chr4 1969775 1970026 -182318636 + AluJo SINE Alu 39 295 -17 2542 42 0 3 chr4 1970689 1971001 -182317661 + AluY SINE Alu 1 311 0 610 229 8 0 chr4 1971137 1971268 -182317394 - FLAM_A SINE Alu -1 132 1 693 189 26 4 chr4 1971451 1971684 -182316978 + CT-rich Low_complexity Low_complexity 1 238 0 2127 94 17 0 chr4 1971701 1972000 -182316662 - AluY SINE Alu -7 304 1 929 111 6 18 chr4 1972000 1972171 -182316491 + (TTTC)n Simple_repeat Simple_repeat 2 170 0 1849 114 14 0 chr4 1972173 1972453 -182316209 - AluSx SINE Alu -18 294 11 237 194 16 0 chr4 1972470 1972532 -182316130 - L1MB7 LINE L1 0 6184 6122 * 1673 184 19 67 chr4 1972525 1972601 -182316061 + L1 LINE L1 4124 4202 -1944 3575 180 32 58 chr4 1972601 1973581 -182315081 + LTR5 LTR ERVK 2 955 -14 1673 184 19 67 chr4 1973581 1973719 -182314943 + L1 LINE L1 4202 4345 -1801 1881 99 95 0 chr4 1973719 1973992 -182314670 - AluSc SINE Alu -10 299 1 1673 184 19 67 chr4 1973992 1974237 -182314425 + L1 LINE L1 4345 4562 -1584 319 226 0 0 chr4 1974238 1974300 -182314362 + AluS SINE Alu 1 62 -240 1856 197 19 12 chr4 1974300 1974716 -182313946 + L1P LINE L1 4858 5276 -870 10173 130 15 26 chr4 1974716 1976347 -182312315 - PRIMA41-int LTR ERV1 -179 6497 4886 1564 162 12 0 chr4 1976347 1976594 -182312068 + MER52A LTR ERV1 1506 1755 0 6560 130 47 17 chr4 1976604 1977722 -182310940 - THE1-int LTR MaLR 0 1580 430 13640 122 24 6 chr4 1977720 1980340 -182308322 - L1PA10 LINE L1 0 6483 3803 2171 108 3 0 chr4 1980340 1980637 -182308025 - AluSq SINE Alu -15 298 1 13640 122 24 6 chr4 1980637 1981039 -182307623 - L1PA10 LINE L1 -2680 3803 3410 1129 112 0 0 chr4 1981041 1981220 -182307442 + L1P LINE L1 4411 4589 -1557 * 9551 185 21 44 chr4 1981217 1981847 -182306815 - L1PA10 LINE L1 -3051 3410 2768 2213 89 0 4 chr4 1981847 1982171 -182306491 + AluSc SINE Alu 2 324 0 9551 185 21 44 chr4 1982171 1982814 -182305848 - L1PA10 LINE L1 -3693 2768 2112 2155 106 0 20 chr4 1982814 1983117 -182305545 - AluSg SINE Alu -13 297 1 9551 185 21 44 chr4 1983117 1983145 -182305517 - L1PA10 LINE L1 -4349 2112 2085 1512 103 198 12 chr4 1983145 1983397 -182305265 + AluSc SINE Alu 1 299 0 9551 185 21 44 chr4 1983397 1984298 -182304364 - L1PA10 LINE L1 -4376 2085 1287 2140 78 26 19 chr4 1984298 1984606 -182304056 - AluSg SINE Alu 0 310 1 9551 185 21 44 chr4 1984606 1985192 -182303470 - L1PA10 LINE L1 -5174 1287 690 1406 151 0 18 chr4 1985221 1985439 -182303223 - AluSg SINE Alu -96 214 1 1041 338 52 66 chr4 1985611 1986487 -182302175 - PRIMA41-int LTR ERV1 -3193 4563 4101 2162 63 30 0 chr4 1986487 1986787 -182301875 - AluY SINE Alu -2 309 1 1041 338 52 66 chr4 1986787 1987472 -182301190 - PRIMA41-int LTR ERV1 -3655 4101 3408 429 364 31 0 chr4 1987639 1987958 -182300704 + ERVL LTR ERVL 3656 3984 -1780 1379 137 172 15 chr4 1988051 1988388 -182300274 + MSTA LTR MaLR 1 390 -38 710 132 26 0 chr4 1988389 1988503 -182300159 - AluSq/x SINE Alu -196 117 1 286 224 64 32 chr4 1988503 1988628 -182300034 + L1M4 LINE L1 2869 2997 -3149 630 179 94 0 chr4 1988678 1988890 -182299772 + LTR23-int LTR ERV1 2275 2506 -2365 1082 294 86 60 chr4 1989007 1989328 -182299334 - L1M4 LINE L1 -3091 3055 2744 396 0 0 0 chr4 1989328 1989372 -182299290 + (TA)n Simple_repeat Simple_repeat 1 44 0 1516 170 71 32 chr4 1989381 1989663 -182298999 - AluJo SINE Alu -19 293 1 1082 294 86 60 chr4 1989663 1989916 -182298746 - L1M4 LINE L1 -3409 2737 2456 574 212 66 99 chr4 1990190 1990216 -182298446 + LTR23-int LTR ERV1 1522 1547 -6573 2049 122 13 0 chr4 1990216 1990520 -182298142 + AluSx SINE Alu 1 308 -4 574 212 66 99 chr4 1990520 1990629 -182298033 + LTR23-int LTR ERV1 1547 1658 -6462 1775 131 17 14 chr4 1990629 1990919 -182297743 + AluSx SINE Alu 1 291 -21 574 212 66 99 chr4 1990919 1991174 -182297488 + LTR23-int LTR ERV1 1658 1900 -6220 2093 80 0 0 chr4 1991189 1991452 -182297210 - AluSx SINE Alu -24 288 26 30 0 0 0 chr4 1993347 1993377 -182295285 + GC_rich Low_complexity Low_complexity 1 30 0 216 97 0 0 chr4 1993460 1993491 -182295171 + (CTG)n Simple_repeat Simple_repeat 1 31 0 24 32 0 0 chr4 1993505 1993536 -182295126 + GC_rich Low_complexity Low_complexity 1 31 0 639 178 39 0 chr4 1997345 1997474 -182291188 - AluJb SINE Alu -21 291 158 264 253 46 11 chr4 1997987 1998074 -182290588 + (CCCCG)n Simple_repeat Simple_repeat 1 90 0 208 179 0 0 chr4 1998505 1998544 -182290118 + MIR SINE MIR 105 143 -119 335 211 22 11 chr4 1999475 1999565 -182289097 + LTR23 LTR ERV1 340 430 -7 1647 158 22 0 chr4 1999952 2000278 -182288384 + AluSx SINE Alu 1 332 0 1596 156 50 23 chr4 2000711 2001012 -182287650 - AluJb SINE Alu 0 312 4 545 121 20 30 chr4 2001248 2001347 -182287315 + LTR23-int LTR ERV1 1557 1654 -4677 1135 155 15 30 chr4 2001353 2001553 -182287109 + AluJo SINE Alu 91 287 -25 423 0 0 0 chr4 2001566 2001613 -182287049 + (CA)n Simple_repeat Simple_repeat 2 48 0 512 186 18 26 chr4 2001634 2001747 -182286915 - FLAM_C SINE Alu 0 143 32 3696 204 34 38 chr4 2001751 2002668 -182285994 + LTR23-int LTR ERV1 1675 2587 -3744 303 220 193 47 chr4 2002708 2002858 -182285804 + MER34C LTR ERV1 160 331 -254 2389 55 3 0 chr4 2002858 2003151 -182285511 + AluSp SINE Alu 1 294 -19 1309 143 40 48 chr4 2003184 2003435 -182285227 - AluJo SINE Alu -4 308 60 1577 204 59 117 chr4 2003441 2004126 -182284536 + LTR23-int LTR ERV1 1144 1784 -3339 2333 87 10 0 chr4 2004126 2004436 -182284226 + AluSp SINE Alu 1 313 0 1577 204 59 117 chr4 2004436 2004494 -182284168 + LTR23-int LTR ERV1 1784 1844 -3279 2440 70 0 0 chr4 2004503 2004804 -182283858 - AluY SINE Alu -9 302 2 818 221 0 0 chr4 2004808 2004948 -182283714 - FRAM SINE Alu -16 160 21 1949 133 141 21 chr4 2005027 2005409 -182283253 - MSTA LTR MaLR 0 428 1 2463 69 0 0 chr4 2005424 2005730 -182282932 - AluSc SINE Alu -3 306 1 548 210 87 72 chr4 2005821 2005907 -182282755 + LTR23-int LTR ERV1 1925 2008 -3657 2280 76 17 3 chr4 2005907 2006209 -182282453 + AluY SINE Alu 1 306 -5 548 210 87 72 chr4 2006209 2006284 -182282378 + LTR23-int LTR ERV1 2008 2080 -3585 1628 181 0 4 chr4 2006284 2006561 -182282101 + AluJb SINE Alu 13 288 -24 548 210 87 72 chr4 2006561 2006762 -182281900 + LTR23-int LTR ERV1 2080 3708 -1957 2301 84 7 0 chr4 2006831 2007130 -182281532 + AluSp SINE Alu 1 301 -12 893 130 0 36 chr4 2007139 2007277 -182281385 + FLAM_C SINE Alu 1 133 0 2232 101 7 0 chr4 2007943 2008249 -182280413 - AluSx SINE Alu -4 308 1 1653 159 103 58 chr4 2008569 2008985 -182279677 + LTR23 LTR ERV1 1 435 -2 32 0 0 0 chr4 2009491 2009523 -182279139 + GC_rich Low_complexity Low_complexity 1 32 0 21 57 0 0 chr4 2009650 2009685 -182278977 + GC_rich Low_complexity Low_complexity 1 35 0 304 286 0 39 chr4 2010013 2010090 -182278572 - L1MDa LINE L1 -4037 2503 2430 21 0 0 0 chr4 2010954 2010975 -182277687 + AT_rich Low_complexity Low_complexity 1 21 0 496 265 9 55 chr4 2014486 2014705 -182273957 - AluYa5 SINE Alu -5 306 98 191 36 36 0 chr4 2017807 2017835 -182270827 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2312 101 3 0 chr4 2019335 2019643 -182269019 + AluSc SINE Alu 1 309 0 900 221 82 41 chr4 2019660 2020008 -182268654 - MLT1C LTR MaLR -56 411 42 2871 198 96 14 chr4 2020379 2021100 -182267562 + L1MB7 LINE L1 5348 6127 -57 1020 178 23 0 chr4 2021100 2021274 -182267388 - AluJb SINE Alu -30 282 105 739 104 0 0 chr4 2021274 2021380 -182267282 - FLAM_C SINE Alu -1 142 37 254 153 85 17 chr4 2021407 2021466 -182267196 + L1MB7 LINE L1 6112 6174 -10 322 324 41 14 chr4 2025553 2025698 -182262964 + MIR SINE MIR 37 185 -77 1668 190 122 117 chr4 2025701 2026274 -182262388 - MER70B LTR ERVL -2 576 1 444 67 0 0 chr4 2029061 2029121 -182259541 + (TG)n Simple_repeat Simple_repeat 1 60 0 1573 185 10 89 chr4 2029791 2030085 -182258577 - MLT1B LTR MaLR -16 374 119 1892 148 0 43 chr4 2030085 2030230 -182258432 + AluJo SINE Alu 1 128 -184 2447 80 0 22 chr4 2030230 2030542 -182258120 + AluY SINE Alu 1 305 -6 1892 148 0 43 chr4 2030542 2030701 -182257961 + AluJo SINE Alu 128 292 -20 1573 185 10 89 chr4 2030701 2030812 -182257850 - MLT1B LTR MaLR -271 119 1 384 376 6 0 chr4 2031201 2031363 -182257299 + (CA)n Simple_repeat Simple_repeat 1 163 0 2004 124 0 59 chr4 2032315 2032622 -182256040 + AluSx SINE Alu 2 290 -22 1862 163 3 3 chr4 2033605 2033893 -182254769 + AluJo SINE Alu 1 288 -24 2362 109 0 0 chr4 2033903 2034206 -182254456 + AluSg SINE Alu 1 303 -7 585 0 0 0 chr4 2034212 2034277 -182254385 + (TA)n Simple_repeat Simple_repeat 2 66 0 2425 105 0 0 chr4 2034717 2035022 -182253640 + AluSq SINE Alu 1 305 -8 256 219 0 41 chr4 2037028 2037101 -182251561 + CT-rich Low_complexity Low_complexity 1 70 0 1021 209 67 4 chr4 2037295 2037520 -182251142 - MER8 DNA MER2_type 0 239 1 971 203 30 0 chr4 2037570 2037767 -182250895 + MER21B LTR ERV1 467 669 -194 2192 105 0 0 chr4 2037767 2038044 -182250618 - AluSx SINE Alu -35 277 1 330 241 0 0 chr4 2038044 2038131 -182250531 - L1MEc LINE L1 -1775 4440 4354 3314 197 45 38 chr4 2038149 2038986 -182249676 - MER21B LTR ERV1 -20 843 1 2690 46 0 0 chr4 2038987 2039293 -182249369 - AluY SINE Alu -5 306 1 1016 217 165 37 chr4 2039305 2039409 -182249253 - L1MEc LINE L1 -1856 4359 4270 345 24 0 0 chr4 2039409 2039451 -182249211 + (TG)n Simple_repeat Simple_repeat 2 43 0 1016 217 165 37 chr4 2039451 2039747 -182248915 - L1MEc LINE L1 -1945 4270 3908 232 250 140 20 chr4 2039805 2039905 -182248757 + L2 LINE L2 3193 3304 -9 2123 36 4 4 chr4 2039949 2040223 -182248439 - L1PA3 LINE L1 -2 6153 5880 246 299 56 56 chr4 2040349 2040456 -182248206 - MIR3 SINE MIR -7 201 95 286 254 17 1 chr4 2040744 2040820 -182247842 - MER5B DNA MER1_type -26 163 75 6318 228 66 40 chr4 2040833 2043107 -182245555 - L1MEc LINE L1 -2291 3924 1712 2441 71 0 43 chr4 2043107 2043431 -182245231 - AluY SINE Alu -1 310 1 6318 228 66 40 chr4 2043431 2044260 -182244402 - L1MEc LINE L1 -4503 1712 906 2258 80 42 3 chr4 2044260 2044548 -182244114 - AluY SINE Alu -12 299 1 2368 99 3 13 chr4 2044549 2044863 -182243799 - AluSp SINE Alu -2 311 1 6318 228 66 40 chr4 2044863 2045539 -182243123 - L1MEc LINE L1 -5308 907 34 375 215 84 9 chr4 2045539 2045646 -182243016 - L2 LINE L2 -12 3301 3187 22 35 0 0 chr4 2045974 2046003 -182242659 + AT_rich Low_complexity Low_complexity 1 29 0 411 241 15 53 chr4 2046168 2046301 -182242361 + L1ME LINE L1 5537 5664 -457 928 186 0 0 chr4 2046921 2047082 -182241580 + FRAM SINE Alu 2 162 -14 2090 108 0 0 chr4 2047472 2047740 -182240922 - AluSx SINE Alu -44 268 1 194 195 24 0 chr4 2048418 2048459 -182240203 - MIR SINE MIR -113 149 108 342 139 0 0 chr4 2049516 2049588 -182239074 + (TCCCC)n Simple_repeat Simple_repeat 2 73 0 1855 119 51 10 chr4 2050369 2050663 -182237999 + AluY SINE Alu 4 309 -2 216 0 0 0 chr4 2050858 2050882 -182237780 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1995 128 0 17 chr4 2050884 2051172 -182237490 - AluSx SINE Alu -29 283 1 1543 161 51 11 chr4 2051602 2051875 -182236787 - AluJo SINE Alu -24 288 5 182 224 48 0 chr4 2052416 2052563 -182236099 + (CTCA)n Simple_repeat Simple_repeat 3 156 0 217 203 51 13 chr4 2052579 2052737 -182235925 + (CACCT)n Simple_repeat Simple_repeat 3 166 0 994 224 117 13 chr4 2053951 2054250 -182234412 - LTR53 LTR ERVL 0 519 190 261 55 0 73 chr4 2054610 2054665 -182233997 + (AGGGGG)n Simple_repeat Simple_repeat 2 52 0 342 344 0 16 chr4 2056067 2056250 -182232412 + G-rich Low_complexity Low_complexity 1 180 0 192 314 0 0 chr4 2056785 2056836 -182231826 - L2 LINE L2 -5 3267 3217 185 32 0 65 chr4 2057879 2057910 -182230752 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 715 179 0 0 chr4 2057925 2058042 -182230620 - FLAM_C SINE Alu -25 118 2 367 243 0 42 chr4 2058222 2058366 -182230296 + CT-rich Low_complexity Low_complexity 2 139 0 237 253 6 69 chr4 2058763 2058937 -182229725 + CT-rich Low_complexity Low_complexity 3 165 0 901 203 52 48 chr4 2059121 2059372 -182229290 - L1MB8 LINE L1 -13 6165 5914 250 288 16 24 chr4 2059493 2059618 -182229044 + L1ME LINE L1 5673 5796 -325 311 145 87 0 chr4 2059767 2059836 -182228826 - L1MB4 LINE L1 0 6180 6106 821 110 0 0 chr4 2059867 2059994 -182228668 - L1MB4 LINE L1 -271 5912 5786 2327 211 27 9 chr4 2060025 2060584 -182228078 + L1MB5 LINE L1 4390 4958 -1188 615 126 0 0 chr4 2060615 2060710 -182227952 + MLT2D LTR ERVL 1 95 -319 4333 170 60 9 chr4 2060728 2061623 -182227039 - L1MA7 LINE L1 -10 6281 5341 * 6880 146 39 58 chr4 2061622 2062094 -182226568 + L1 LINE L1 3805 4284 -1862 522 0 0 0 chr4 2062094 2062152 -182226510 + (TA)n Simple_repeat Simple_repeat 2 59 0 2238 110 0 0 chr4 2062152 2062434 -182226228 - AluSg SINE Alu -28 282 1 6880 146 39 58 chr4 2062434 2063485 -182225177 + L1 LINE L1 4282 5301 -845 1684 203 30 0 chr4 2063508 2063808 -182224854 + AluJo SINE Alu 1 309 -3 1482 168 111 0 chr4 2065038 2065335 -182223327 + MLT2D LTR ERVL 77 406 -8 3570 189 83 28 chr4 2065336 2065448 -182223214 + L1MB5 LINE L1 5048 5152 -1022 3394 22 0 0 chr4 2065448 2065858 -182222804 + L1PA2 LINE L1 5746 6155 0 3570 189 83 28 chr4 2065858 2066803 -182221859 + L1MB5 LINE L1 5152 6174 0 283 309 0 0 chr4 2069523 2069607 -182219055 + (CCA)n Simple_repeat Simple_repeat 1 84 0 878 163 42 48 chr4 2070472 2070638 -182218024 - AluJo SINE Alu -142 170 6 2022 89 4 0 chr4 2070877 2071125 -182217537 - AluSx SINE Alu -63 249 1 2317 112 3 0 chr4 2071469 2071774 -182216888 + AluSx SINE Alu 1 306 -6 2345 112 3 10 chr4 2072113 2072427 -182216235 + AluSx SINE Alu 1 312 0 2146 116 0 0 chr4 2072431 2072715 -182215947 + AluY SINE Alu 23 306 -5 1964 154 6 40 chr4 2072895 2073219 -182215443 + 7SLRNA srpRNA srpRNA 2 314 -6 925 257 63 86 chr4 2073232 2073828 -182214834 + L1ME3A LINE L1 991 1566 -4830 2043 123 44 0 chr4 2073828 2074121 -182214541 + AluSx SINE Alu 1 306 -6 925 257 63 86 chr4 2074121 2074314 -182214348 + L1ME3A LINE L1 1566 1762 -4634 1877 137 28 11 chr4 2074325 2074609 -182214053 + AluJo SINE Alu 1 289 -23 1277 279 52 67 chr4 2074734 2075530 -182213132 + L1ME3A LINE L1 1945 2751 -3464 1890 109 81 21 chr4 2075530 2075813 -182212849 - AluSx SINE Alu -8 304 5 1277 279 52 67 chr4 2075813 2075843 -182212819 + L1ME3A LINE L1 2751 2780 -3435 1710 204 10 0 chr4 2075843 2076152 -182212510 + AluJo SINE Alu 1 312 0 1277 279 52 67 chr4 2076152 2076335 -182212327 + L1ME3A LINE L1 2780 2964 -3251 2163 139 0 3 chr4 2076335 2076638 -182212024 - AluSx SINE Alu -10 302 1 2663 49 3 0 chr4 2076646 2076954 -182211708 - AluY SINE Alu -2 309 1 1277 279 52 67 chr4 2076954 2077009 -182211653 + L1ME3A LINE L1 2971 2983 -3232 607 180 62 23 chr4 2077009 2077137 -182211525 - FLAM_C SINE Alu 0 133 1 1277 279 52 67 chr4 2077137 2077186 -182211476 + L1ME3A LINE L1 2983 3031 -3184 659 118 0 0 chr4 2077192 2077285 -182211377 + AluJ/FLAM SINE Alu 2 94 -218 438 173 0 37 chr4 2077287 2077368 -182211294 - AluSc SINE Alu -110 199 122 1129 192 0 0 chr4 2077444 2077626 -182211036 + AluJo SINE Alu 121 302 -10 2736 249 32 78 chr4 2077627 2077861 -182210801 + L1ME3A LINE L1 3040 3283 -2932 2191 128 0 7 chr4 2077861 2078157 -182210505 - AluSg SINE Alu -16 294 1 2736 249 32 78 chr4 2078157 2078582 -182210080 + L1ME3A LINE L1 3283 3726 -2489 1832 189 3 0 chr4 2078582 2078879 -182209783 - AluJb SINE Alu -14 298 1 2736 249 32 78 chr4 2078879 2079064 -182209598 + L1ME3A LINE L1 3726 3918 -2297 1847 190 0 0 chr4 2079064 2079364 -182209298 + AluJb SINE Alu 3 302 -10 2736 249 32 78 chr4 2079364 2079986 -182208676 + L1ME3A LINE L1 3918 4441 -1774 1354 185 188 28 chr4 2079989 2080383 -182208279 - MSTB2 LTR MaLR 0 457 1 395 345 55 0 chr4 2080383 2080603 -182208059 + L1ME3A LINE L1 4446 4677 -1538 241 244 0 0 chr4 2080615 2080660 -182208002 + polypyrimidine Low_complexity Low_complexity 1 45 0 913 112 22 11 chr4 2080660 2080838 -182207824 + CT-rich Low_complexity Low_complexity 1 180 0 231 167 0 0 chr4 2080863 2080905 -182207757 + CT-rich Low_complexity Low_complexity 1 42 0 343 206 0 0 chr4 2080905 2080973 -182207689 + L1ME3A LINE L1 4684 4751 -1464 356 252 135 0 chr4 2080987 2081098 -182207564 - L1ME LINE L1 -400 5770 5645 804 219 0 0 chr4 2081119 2081265 -182207397 + FRAM SINE Alu 1 146 -30 198 0 0 0 chr4 2081267 2081289 -182207373 + (GAA)n Simple_repeat Simple_repeat 3 24 0 1256 248 77 46 chr4 2081305 2081612 -182207050 + L1ME3A LINE L1 4810 5106 -1129 1525 159 37 40 chr4 2081612 2081908 -182206754 + AluJo SINE Alu 3 297 -15 1256 248 77 46 chr4 2081908 2082353 -182206309 + L1ME3A LINE L1 5106 5584 -651 308 351 161 0 chr4 2082414 2082625 -182206037 + L1ME3A LINE L1 5689 5933 -306 524 151 35 126 chr4 2082630 2082829 -182205833 + MER53 DNA DNA 3 183 -6 239 281 0 0 chr4 2082988 2083045 -182205617 + L1ME3A LINE L1 6114 6170 -69 399 296 54 96 chr4 2083221 2083501 -182205161 + L2 LINE L2 3005 3272 0 304 215 43 32 chr4 2086306 2086399 -182202263 - L1MB7 LINE L1 -183 6001 5908 1084 291 59 0 chr4 2086532 2086938 -182201724 - L1MB7 LINE L1 -278 5906 5477 209 276 67 75 chr4 2088136 2088270 -182200392 - L2 LINE L2 -2 3270 3138 244 228 0 0 chr4 2089244 2089301 -182199361 - L1ME4a LINE L1 -4 6117 6061 1681 181 7 16 chr4 2089308 2089618 -182199044 + AluJo SINE Alu 3 309 -3 301 275 142 0 chr4 2089650 2089770 -182198892 - L1M4 LINE L1 -2929 3217 3081 330 183 11 21 chr4 2089778 2089871 -182198791 + C-rich Low_complexity Low_complexity 2 93 0 697 243 98 6 chr4 2089871 2090044 -182198618 - AluJo SINE Alu -4 308 120 308 298 21 0 chr4 2090044 2090138 -182198524 - L1ME LINE L1 -465 5656 5561 255 319 148 0 chr4 2093728 2093863 -182194799 - L2 LINE L2 -240 3073 2919 2122 113 3 29 chr4 2094036 2094346 -182194316 + AluSq SINE Alu 2 303 -10 675 174 58 0 chr4 2094389 2094527 -182194135 - L1ME LINE L1 -629 5537 5392 822 126 15 37 chr4 2094530 2094665 -182193997 - FLAM_A SINE Alu -1 141 10 5368 235 53 35 chr4 2094676 2095734 -182192928 - L1ME LINE L1 -751 5395 4285 2502 57 0 0 chr4 2095734 2096034 -182192628 - AluY SINE Alu -11 300 1 5368 235 53 35 chr4 2096034 2096861 -182191801 - L1ME LINE L1 -1861 4285 3475 188 298 0 0 chr4 2098240 2098287 -182190375 + L3b LINE CR1 1300 1346 -237 247 167 0 121 chr4 2099749 2099815 -182188847 + MIR SINE MIR 79 136 -126 346 178 78 9 chr4 2099815 2099914 -182188748 + AluJ/FLAM SINE Alu 1 77 -225 1686 186 13 0 chr4 2100197 2100504 -182188158 - AluSx SINE Alu -1 311 1 1632 174 54 14 chr4 2100516 2100810 -182187852 - AluJo SINE Alu -6 306 1 288 218 0 0 chr4 2100815 2100870 -182187792 - MIR SINE MIR -116 146 92 182 170 0 64 chr4 2101322 2101369 -182187293 + L2 LINE L2 3009 3052 -220 753 252 204 21 chr4 2102273 2102652 -182186010 - MLT1D LTR MaLR -7 488 52 394 231 29 0 chr4 2102915 2103019 -182185643 - MLT1E3 LTR MaLR -76 548 442 2416 197 15 15 chr4 2104121 2104587 -182184075 - MLT1C LTR MaLR -1 466 1 637 200 8 8 chr4 2105129 2105249 -182183413 + AluJb SINE Alu 146 265 -47 1012 163 4 6 chr4 2105897 2106404 -182182258 + (TGGA)n Simple_repeat Simple_repeat 1 506 0 773 148 8 0 chr4 2106567 2106689 -182181973 - FLAM_A SINE Alu 0 142 20 2053 175 47 11 chr4 2107785 2108167 -182180495 + MSTD LTR MaLR 1 396 0 1857 142 6 25 chr4 2108964 2109282 -182179380 - AluJo SINE Alu 0 312 1 302 328 61 23 chr4 2109301 2109432 -182179230 - L1ME LINE L1 -264 5857 5722 3494 203 32 69 chr4 2109479 2109711 -182178951 - L1MB7 LINE L1 -54 6130 5891 2365 57 10 7 chr4 2109711 2110008 -182178654 - AluY SINE Alu -13 298 1 3494 203 32 69 chr4 2110008 2110058 -182178604 - L1MB7 LINE L1 -293 5891 5841 1965 106 7 0 chr4 2110058 2110333 -182178329 - AluSx SINE Alu -12 300 24 3494 203 32 69 chr4 2110333 2111020 -182177642 - L1MB7 LINE L1 -343 5841 5130 1584 133 0 4 chr4 2111020 2111253 -182177409 + AluJb SINE Alu 3 234 -78 3494 203 32 69 chr4 2111253 2111991 -182176671 - L1MB7 LINE L1 -1054 5130 4316 2264 91 3 3 chr4 2111998 2112307 -182176355 - AluSx SINE Alu -2 310 2 363 222 0 0 chr4 2112311 2112392 -182176270 - L1MB7 LINE L1 0 6184 6104 1961 229 50 12 chr4 2112514 2113029 -182175633 - L1MB3 LINE L1 -2 6181 5647 271 266 112 21 chr4 2113046 2113189 -182175473 + HAL1 LINE L1 538 693 -1814 284 222 25 25 chr4 2113760 2113841 -182174821 - L1MB3 LINE L1 -572 5590 5510 335 361 100 11 chr4 2113850 2114030 -182174632 + HAL1 LINE L1 822 1017 -1490 291 206 28 19 chr4 2114043 2114150 -182174512 + HAL1 LINE L1 1069 1176 -1331 637 275 117 43 chr4 2114493 2114908 -182173754 - MLT1D LTR MaLR 0 467 22 189 264 0 0 chr4 2116915 2116987 -182171675 + (CA)n Simple_repeat Simple_repeat 1 72 0 296 276 13 0 chr4 2120861 2120937 -182167725 + MER81 DNA DNA 2 78 -36 205 290 116 0 chr4 2121210 2121279 -182167383 - MIR SINE MIR -79 183 107 196 343 42 21 chr4 2123105 2123248 -182165414 - L3 LINE CR1 -96 1481 1336 * 291 269 47 32 chr4 2123241 2123402 -182165260 - MIR SINE MIR -12 250 89 2162 60 53 3 chr4 2126076 2126361 -182162301 + AluSc SINE Alu 1 299 -10 28 29 0 0 chr4 2126870 2126905 -182161757 + GC_rich Low_complexity Low_complexity 1 35 0 201 238 16 16 chr4 2127242 2127305 -182161357 + (CCCGG)n Simple_repeat Simple_repeat 3 65 0 48 72 0 0 chr4 2127425 2127522 -182161140 + GC_rich Low_complexity Low_complexity 1 97 0 34 42 0 0 chr4 2127610 2127658 -182161004 + GC_rich Low_complexity Low_complexity 1 48 0 204 184 41 0 chr4 2127787 2127836 -182160826 + C-rich Low_complexity Low_complexity 4 54 0 40 87 0 0 chr4 2127861 2127964 -182160698 + GC_rich Low_complexity Low_complexity 1 103 0 24 67 0 0 chr4 2128030 2128075 -182160587 + GC_rich Low_complexity Low_complexity 1 45 0 334 311 67 8 chr4 2129089 2129208 -182159454 - MIR SINE MIR -43 219 94 228 189 167 33 chr4 2131688 2131778 -182156884 - L2 LINE L2 -38 3234 3133 182 40 0 0 chr4 2132619 2132644 -182156018 - L2 LINE L2 -219 3053 3029 344 330 60 47 chr4 2134795 2134968 -182153694 - L1 LINE L1 -802 5344 5172 350 289 102 62 chr4 2134968 2135224 -182153438 - L1ME4a LINE L1 -1 6120 5127 318 244 51 0 chr4 2135228 2135306 -182153356 + L1ME4a LINE L1 5983 6064 -57 209 262 0 0 chr4 2139385 2139427 -182149235 + (TCCG)n Simple_repeat Simple_repeat 2 43 0 228 292 0 0 chr4 2139611 2139676 -182148986 + (CA)n Simple_repeat Simple_repeat 1 65 0 770 74 11 63 chr4 2145420 2145609 -182143053 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 257 269 164 10 chr4 2146196 2146300 -182142362 + LTR37B LTR ERV1 197 316 -152 2455 55 0 29 chr4 2146415 2146725 -182141937 - AluSg SINE Alu -9 301 1 287 204 0 84 chr4 2147067 2147209 -182141453 + (CCCCG)n Simple_repeat Simple_repeat 4 133 0 214 218 18 0 chr4 2151021 2151076 -182137586 + T-rich Low_complexity Low_complexity 5 60 0 368 253 91 0 chr4 2151529 2151628 -182137034 + MER91C DNA MER1_type 33 140 0 194 272 102 37 chr4 2151765 2151957 -182136705 - MIR SINE MIR -44 218 16 330 174 11 33 chr4 2151965 2152057 -182136605 + CT-rich Low_complexity Low_complexity 1 90 0 1526 186 47 18 chr4 2152057 2152332 -182136330 - AluJo SINE Alu -17 295 13 267 54 0 0 chr4 2152604 2152641 -182136021 + (TTA)n Simple_repeat Simple_repeat 2 38 0 2047 105 7 18 chr4 2152643 2152928 -182135734 - AluSx SINE Alu -30 282 1 412 219 36 82 chr4 2153849 2154068 -182134594 - L1ME1 LINE L1 -262 5904 5696 564 116 67 37 chr4 2154071 2154191 -182134471 - L1M3 LINE L1 -626 5554 5429 590 252 32 142 chr4 2154211 2154321 -182134341 - L1M4 LINE L1 -3549 2597 2477 2318 95 0 0 chr4 2154321 2154615 -182134047 + AluSg SINE Alu 1 294 -16 590 252 32 142 chr4 2154615 2154904 -182133758 - L1M4 LINE L1 -3669 2477 2238 545 308 88 65 chr4 2155296 2155650 -182133012 - L1ME4a LINE L1 -239 5882 5521 1065 217 99 15 chr4 2155655 2155987 -182132675 - HsTC2 DNA Tc2 -22 1876 1517 417 221 19 10 chr4 2155989 2156093 -182132569 - HsTC2 DNA Tc2 -1793 105 1 398 276 79 26 chr4 2156426 2156578 -182132084 - MER5A DNA MER1_type -1 188 29 286 232 274 0 chr4 2156984 2157079 -182131583 + L2 LINE L2 3193 3313 0 25 0 0 0 chr4 2157269 2157294 -182131368 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr4 2157312 2157334 -182131328 + AT_rich Low_complexity Low_complexity 1 22 0 2188 104 3 3 chr4 2157898 2158186 -182130476 - AluSc SINE Alu -21 288 1 2111 131 0 0 chr4 2159205 2159488 -182129174 - AluSx SINE Alu -25 287 5 2183 92 14 7 chr4 2159647 2159962 -182128700 - AluSq SINE Alu 0 317 1 2244 73 49 0 chr4 2160869 2161156 -182127506 + AluY SINE Alu 1 301 -10 180 143 0 0 chr4 2161218 2161260 -182127402 + (T)n Simple_repeat Simple_repeat 1 42 0 515 135 0 0 chr4 2161792 2161866 -182126796 + FLAM_A SINE Alu 53 126 -16 1282 234 87 9 chr4 2161988 2162322 -182126340 - MLT1E LTR MaLR -8 585 226 566 263 44 12 chr4 2162348 2162508 -182126154 - MLT1E LTR MaLR -428 165 1 423 302 124 28 chr4 2163167 2163501 -182125161 + MLT1J LTR MaLR 38 440 -71 1814 150 46 4 chr4 2163503 2163783 -182124879 - AluJo SINE Alu -17 295 4 21 36 0 0 chr4 2163793 2163821 -182124841 + AT_rich Low_complexity Low_complexity 1 28 0 1999 121 4 0 chr4 2163924 2164196 -182124466 - AluSx SINE Alu -3 309 37 201 133 0 0 chr4 2164218 2164248 -182124414 + (CATA)n Simple_repeat Simple_repeat 3 32 0 22 70 0 0 chr4 2164343 2164386 -182124276 + AT_rich Low_complexity Low_complexity 1 43 0 5770 120 36 106 chr4 2164394 2164540 -182124122 + Tigger3b DNA MER2_type 2 157 -2871 2285 104 3 3 chr4 2164540 2164837 -182123825 - AluSq SINE Alu -16 297 1 5770 120 36 106 chr4 2164837 2165926 -182122736 + Tigger3b DNA MER2_type 157 1145 -1883 2139 156 3 9 chr4 2165926 2166265 -182122397 - MER1B DNA MER1_type 0 337 1 5770 120 36 106 chr4 2166265 2166327 -182122335 + Tigger3b DNA MER2_type 1145 1210 -21 956 253 122 22 chr4 2166518 2166878 -182121784 + HERV16 LTR ERVL 1 396 -4600 845 171 204 52 chr4 2166963 2167232 -182121430 - AluJb SINE Alu -2 310 1 2205 90 67 41 chr4 2167392 2167631 -182121031 - MER4A LTR ERV1 0 664 410 2015 146 7 0 chr4 2167631 2167926 -182120736 + AluSx SINE Alu 1 297 -15 2205 90 67 41 chr4 2167926 2168074 -182120588 - MER4A LTR ERV1 -254 410 267 606 110 0 20 chr4 2168087 2168187 -182120475 - MER4A LTR ERV1 -566 98 1 871 183 35 18 chr4 2168199 2168368 -182120294 + AluJb SINE Alu 129 300 -12 558 234 58 92 chr4 2168752 2169013 -182119649 - LTR41 LTR ERVL -12 761 510 389 241 37 80 chr4 2169279 2169441 -182119221 - LTR41 LTR ERVL -618 155 1 2033 234 66 12 chr4 2169441 2170032 -182118630 + HERV16 LTR ERVL 829 1451 -3545 2152 259 110 21 chr4 2170052 2170798 -182117864 + HERV16 LTR ERVL 1758 2569 -2427 582 268 100 11 chr4 2170858 2171048 -182117614 + HERV16 LTR ERVL 2721 2927 -2069 2259 85 7 43 chr4 2171051 2171356 -182117306 - AluSp SINE Alu -19 294 1 675 191 32 8 chr4 2171359 2171485 -182117177 - FLAM_A SINE Alu -1 141 13 800 323 50 12 chr4 2171657 2172057 -182116605 + HERV16 LTR ERVL 3116 3530 -2234 507 264 59 42 chr4 2172194 2172433 -182116229 + HERV16 LTR ERVL 3421 3663 -1333 959 343 109 20 chr4 2172496 2173435 -182115227 + HERV16 LTR ERVL 4082 5103 -661 491 293 105 4 chr4 2173866 2174095 -182114567 + LTR16A LTR ERVL 102 353 -97 256 315 64 34 chr4 2174224 2174491 -182114171 - L1ME LINE L1 -239 5882 5605 361 233 0 117 chr4 2174553 2174673 -182113989 + L1MC4 LINE L1 6614 6719 -1323 297 314 38 9 chr4 2174774 2174879 -182113783 - L1ME LINE L1 -2191 5617 5510 229 286 8 17 chr4 2174939 2175058 -182113604 - L1P LINE L1 -785 5361 5244 546 304 143 49 chr4 2175125 2175254 -182113408 - L1ME LINE L1 -1340 4806 4691 2267 112 0 0 chr4 2175254 2175549 -182113113 - AluSx SINE Alu -17 295 1 546 304 143 49 chr4 2175549 2175844 -182112818 - L1ME LINE L1 -1455 4691 4342 403 240 0 0 chr4 2175858 2175933 -182112729 + MIR SINE MIR 4 78 -184 301 330 28 132 chr4 2176493 2176811 -182111851 - L2 LINE L2 0 3272 2988 1875 157 0 35 chr4 2176817 2177136 -182111526 + AluJo SINE Alu 1 308 -4 316 211 18 0 chr4 2177332 2177389 -182111273 + MIR SINE MIR 8 65 -197 1248 214 93 68 chr4 2177620 2177661 -182111001 - Charlie2 DNA MER1_type 0 2862 2824 1516 162 0 113 chr4 2177661 2178007 -182110655 - AluSx SINE Alu 0 312 3 1248 214 93 68 chr4 2178007 2178202 -182110460 - Charlie2 DNA MER1_type -38 2824 2635 450 0 0 0 chr4 2178202 2178252 -182110410 + (TTA)n Simple_repeat Simple_repeat 2 51 0 2137 104 7 0 chr4 2178254 2178532 -182110130 - AluSx SINE Alu -30 282 3 378 0 0 0 chr4 2178537 2178579 -182110083 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 2113 111 14 0 chr4 2178582 2178862 -182109800 - AluSg SINE Alu -26 284 1 1862 157 7 14 chr4 2178864 2179206 -182109456 - AluJb SINE Alu 0 312 1 1248 214 93 68 chr4 2179206 2179478 -182109184 - Charlie2 DNA MER1_type -231 2631 2367 212 75 0 25 chr4 2179478 2179518 -182109144 + (TA)n Simple_repeat Simple_repeat 1 39 0 1248 214 93 68 chr4 2179518 2179541 -182109121 - Charlie2 DNA MER1_type -495 2367 2346 2052 161 0 0 chr4 2179541 2179851 -182108811 + AluJb SINE Alu 1 310 -2 1248 214 93 68 chr4 2179851 2179977 -182108685 - Charlie2 DNA MER1_type -516 2346 2169 2340 109 3 0 chr4 2180001 2180303 -182108359 - AluSg SINE Alu -7 303 1 2199 117 7 0 chr4 2180505 2180795 -182107867 - AluSq SINE Alu -21 292 1 1718 159 66 3 chr4 2181671 2182097 -182106565 - L1M4 LINE L1 -587 5597 5149 307 66 0 66 chr4 2182118 2182179 -182106483 + (TTTCC)n Simple_repeat Simple_repeat 1 57 0 14974 188 26 18 chr4 2182179 2183609 -182105053 - L1PB1 LINE L1 -85 6782 5365 2364 96 0 7 chr4 2183609 2183910 -182104752 - AluSg SINE Alu -11 299 1 14974 188 26 18 chr4 2183910 2185368 -182103294 - L1PB1 LINE L1 -1502 5365 3920 2360 93 7 3 chr4 2185368 2185678 -182102984 - AluSq SINE Alu -1 312 2 14974 188 26 18 chr4 2185678 2185911 -182102751 - L1PB1 LINE L1 -2947 3920 3690 2235 115 0 3 chr4 2185911 2186207 -182102455 - AluSc SINE Alu -14 295 1 14974 188 26 18 chr4 2186207 2186753 -182101909 - L1PB1 LINE L1 -3177 3690 3150 2270 114 0 0 chr4 2186753 2187052 -182101610 - AluSx SINE Alu 0 312 14 14974 188 26 18 chr4 2187052 2187362 -182101300 - L1PB1 LINE L1 -3717 3150 2844 194 0 39 0 chr4 2187362 2187388 -182101274 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 14974 188 26 18 chr4 2187388 2188204 -182100458 - L1PB1 LINE L1 -4023 2844 1881 2324 88 0 38 chr4 2188204 2188522 -182100140 - AluSc SINE Alu -3 306 1 14974 188 26 18 chr4 2188522 2189016 -182099646 - L1PB1 LINE L1 -4986 1881 1392 940 202 21 0 chr4 2189013 2189201 -182099461 - L1PB1 LINE L1 -6666 197 6 * 1321 170 54 35 chr4 2189218 2189535 -182099127 - L1M4 LINE L1 -1384 4762 4440 2051 126 10 10 chr4 2189631 2189932 -182098730 + AluSx SINE Alu 1 301 -11 1520 236 39 16 chr4 2190111 2190602 -182098060 - L1M4 LINE L1 -1537 4609 4108 1204 285 66 2 chr4 2191934 2192387 -182096275 + L2 LINE L2 2296 2777 -537 192 288 125 11 chr4 2192476 2192660 -182096002 + L2 LINE L2 2812 3016 -297 229 243 43 14 chr4 2192972 2193042 -182095620 - L1MC4 LINE L1 -385 7657 7586 298 267 62 27 chr4 2193068 2193214 -182095448 - L1MC5 LINE L1 -543 7418 7268 723 123 66 0 chr4 2193243 2193365 -182095297 + MER53 DNA DNA 1 130 -59 407 207 47 64 chr4 2193551 2193717 -182094945 - L1MC4 LINE L1 -740 7221 7084 1632 158 4 36 chr4 2193768 2194046 -182094616 + AluJo SINE Alu 44 312 0 248 254 56 14 chr4 2194143 2194214 -182094448 + L2 LINE L2 3232 3305 -8 225 214 0 0 chr4 2194542 2194598 -182094064 + L1MC4 LINE L1 6648 6703 -1339 905 131 0 91 chr4 2194599 2194775 -182093887 - AluJ SINE Alu -21 291 132 562 317 23 58 chr4 2195258 2195517 -182093145 + MIR SINE MIR 12 261 -1 391 257 0 26 chr4 2195964 2196077 -182092585 + MIR SINE MIR 71 180 -82 27 61 0 15 chr4 2196652 2196692 -182091970 + AT_rich Low_complexity Low_complexity 1 41 -24 851 146 0 0 chr4 2196692 2196822 -182091840 - AluJ SINE Alu -172 130 1 27 61 0 15 chr4 2196822 2196847 -182091815 + AT_rich Low_complexity Low_complexity 41 65 0 2091 116 39 0 chr4 2196870 2197155 -182091507 + AluSg SINE Alu 1 296 -14 420 137 48 186 chr4 2197335 2197373 -182091289 - L1MC5 LINE L1 -104 7857 7815 2030 97 0 8 chr4 2197373 2197641 -182091021 - AluSg SINE Alu -10 300 35 420 137 48 186 chr4 2197641 2197850 -182090812 - L1MC5 LINE L1 -146 7815 7644 5902 131 55 25 chr4 2197872 2199461 -182089201 - L1MA4 LINE L1 -7 6293 4753 2322 94 13 0 chr4 2199461 2199759 -182088903 - AluSc SINE Alu -7 302 1 5902 131 55 25 chr4 2199759 2199846 -182088816 - L1MA4 LINE L1 -1547 4753 4670 2537 72 0 0 chr4 2199846 2200150 -182088512 - AluY SINE Alu -7 304 1 5902 131 55 25 chr4 2200150 2200186 -182088476 - L1MA4 LINE L1 -1630 4670 4530 * 7064 184 58 60 chr4 2200170 2200842 -182087820 - L1 LINE L1 -3849 2479 1807 2447 63 0 7 chr4 2200842 2201189 -182087473 - AluY SINE Alu 0 311 1 7064 184 58 60 chr4 2201189 2201392 -182087270 - L1 LINE L1 -4521 1807 1605 1761 164 0 18 chr4 2201392 2201678 -182086984 - AluJo SINE Alu -30 282 2 7064 184 58 60 chr4 2201678 2201964 -182086698 - L1 LINE L1 -4723 1605 1320 2123 125 0 0 chr4 2201964 2202277 -182086385 + AluSx SINE Alu 1 313 0 7064 184 58 60 chr4 2202277 2203586 -182085076 - L1 LINE L1 -5008 1320 14 2893 207 70 60 chr4 2203600 2203735 -182084927 - L1MC5 LINE L1 -302 7659 7527 2348 104 3 3 chr4 2203735 2204044 -182084618 - AluSx SINE Alu -3 309 1 2893 207 70 60 chr4 2204044 2205012 -182083650 - L1MC5 LINE L1 -434 7527 6530 312 275 37 78 chr4 2205042 2205311 -182083351 - HAL1b LINE L1 -809 539 282 1949 112 101 0 chr4 2205352 2205628 -182083034 + AluSx SINE Alu 1 304 -8 4240 174 76 32 chr4 2205661 2206872 -182081790 - L1MB7 LINE L1 -5 6179 4886 1700 202 64 36 chr4 2206872 2207322 -182081340 - MLT1C LTR MaLR 0 467 5 4240 174 76 32 chr4 2207322 2207464 -182081198 - L1MB7 LINE L1 -1298 4886 4752 2305 75 0 69 chr4 2207491 2207809 -182080853 - AluY SINE Alu -15 296 1 180 0 0 0 chr4 2207986 2208006 -182080656 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 21 0 0 0 chr4 2208028 2208049 -182080613 + AT_rich Low_complexity Low_complexity 1 21 0 2307 115 0 3 chr4 2208060 2208373 -182080289 + AluSx SINE Alu 1 312 0 2151 141 0 0 chr4 2210594 2210891 -182077771 + AluSx SINE Alu 1 297 -15 311 206 62 89 chr4 2211423 2211569 -182077093 - LTR67 LTR ERVL 0 557 416 344 147 0 93 chr4 2211818 2211893 -182076769 - MIR SINE MIR -109 153 86 198 304 104 26 chr4 2212812 2212927 -182075735 + MIR SINE MIR 28 151 -111 304 307 70 42 chr4 2213885 2214126 -182074536 + L1M4 LINE L1 4456 4703 -1443 2137 130 0 3 chr4 2214382 2214681 -182073981 + AluSx SINE Alu 1 298 -14 678 178 17 35 chr4 2215934 2216108 -182072554 + L1MA4A LINE L1 5950 6120 -183 430 224 20 0 chr4 2216109 2216207 -182072455 + L1MA4A LINE L1 6183 6282 -21 412 317 135 13 chr4 2216415 2216907 -182071755 - L1ME3A LINE L1 -206 5964 5402 207 0 0 0 chr4 2217245 2217268 -182071394 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 263 237 172 12 chr4 2217332 2217501 -182071161 - L1ME LINE L1 -715 5449 5254 856 137 14 0 chr4 2217684 2217823 -182070839 - FLAM_C SINE Alu -2 141 1 1630 181 7 24 chr4 2217905 2218198 -182070464 - AluJo SINE Alu -20 292 5 367 277 0 0 chr4 2219758 2219852 -182068810 + MIR SINE MIR 100 193 -69 193 292 171 30 chr4 2220066 2220330 -182068332 + L2 LINE L2 2615 2915 -399 290 204 78 10 chr4 2221210 2221313 -182067349 + L2 LINE L2 3183 3292 -21 253 212 68 104 chr4 2221324 2221484 -182067178 - L1M4 LINE L1 -3173 2973 2822 2013 122 14 0 chr4 2221484 2221770 -182066892 - AluSq SINE Alu -23 290 1 253 212 68 104 chr4 2221770 2221831 -182066831 - L1M4 LINE L1 -3324 2822 2760 2384 189 63 55 chr4 2222389 2222930 -182065732 - MLT2B3 LTR ERVL -9 545 1 289 348 119 28 chr4 2223115 2223270 -182065392 - L2 LINE L2 -431 2883 2743 4972 131 17 71 chr4 2223270 2223291 -182065371 - L1MC1 LINE L1 0 6333 6312 1717 176 14 0 chr4 2223291 2223580 -182065082 + AluJo SINE Alu 1 293 -19 4972 131 17 71 chr4 2223580 2224490 -182064172 - L1MC1 LINE L1 -21 6312 5452 289 348 119 28 chr4 2224490 2224525 -182064137 - L2 LINE L2 -571 2743 2713 2359 113 3 0 chr4 2224525 2224836 -182063826 - AluSx SINE Alu 0 312 1 2227 110 7 0 chr4 2224836 2225136 -182063526 - AluSp SINE Alu -11 302 1 289 348 119 28 chr4 2225136 2225549 -182063113 - L2 LINE L2 -600 2714 2223 234 305 46 8 chr4 2225593 2225724 -182062938 + MER5B DNA MER1_type 41 176 -2 431 281 7 122 chr4 2226231 2226534 -182062128 + L1ME3A LINE L1 4563 4830 -1316 1566 123 18 0 chr4 2226574 2226801 -182061861 + AluJb SINE Alu 1 231 -81 4071 120 106 103 chr4 2226801 2228211 -182060451 - pTR5 LTR ERV1 0 2438 375 285 151 94 0 chr4 2228211 2228264 -182060398 + AluJb SINE Alu 238 295 -7 1163 287 74 42 chr4 2228346 2228598 -182060064 + L1ME3A LINE L1 4957 5200 -962 1734 157 7 11 chr4 2228598 2228878 -182059784 + AluJo SINE Alu 12 290 -22 1163 287 74 42 chr4 2228878 2229498 -182059164 + L1ME3A LINE L1 5200 5864 -298 421 239 158 34 chr4 2229509 2229718 -182058944 + L1ME3A LINE L1 5933 6167 -3 272 220 55 11 chr4 2230778 2230869 -182057793 + L1MC3 LINE L1 7684 7778 -7 246 152 167 30 chr4 2230869 2230935 -182057727 + MER113 DNA MER1_type? 401 475 -46 2133 113 0 14 chr4 2231028 2231320 -182057342 + AluSx SINE Alu 1 288 -24 2234 102 10 3 chr4 2231526 2231831 -182056831 - AluSg SINE Alu -3 307 1 238 161 74 74 chr4 2232005 2232086 -182056576 - MIR SINE MIR -119 143 63 2095 81 25 0 chr4 2233128 2233412 -182055250 + AluY SINE Alu 1 291 -20 25 31 0 0 chr4 2233508 2233540 -182055122 + AT_rich Low_complexity Low_complexity 1 32 0 246 125 333 0 chr4 2234397 2234469 -182054193 - L1MC/D LINE L1 -1989 5819 5724 315 269 221 18 chr4 2234574 2234909 -182053753 - L1MC/D LINE L1 -452 5669 5267 216 0 0 0 chr4 2235010 2235034 -182053628 + (T)n Simple_repeat Simple_repeat 1 24 0 2276 110 3 0 chr4 2235140 2235441 -182053221 + AluSp SINE Alu 1 302 -11 2438 109 0 0 chr4 2235441 2235753 -182052909 + AluSx SINE Alu 1 312 0 325 279 68 37 chr4 2235758 2235784 -182052878 + L2 LINE L2 2688 2712 -602 5075 131 14 74 chr4 2235784 2236700 -182051962 + L1MC1 LINE L1 5452 6312 -21 1888 171 0 0 chr4 2236700 2236993 -182051669 - AluJo SINE Alu -19 293 1 5075 131 14 74 chr4 2236993 2237014 -182051648 + L1MC1 LINE L1 6312 6333 0 325 279 68 37 chr4 2237014 2237177 -182051485 + L2 LINE L2 2712 2883 -431 2642 188 47 55 chr4 2237362 2237911 -182050751 + MLT2B3 LTR ERVL 1 545 -9 425 207 38 110 chr4 2238470 2238533 -182050129 + L1M4 LINE L1 2760 2826 -3320 2187 124 0 0 chr4 2238533 2238824 -182049838 + AluSq SINE Alu 1 291 -22 425 207 38 110 chr4 2238824 2238997 -182049665 + L1M4 LINE L1 2826 2979 -3167 317 217 66 9 chr4 2239003 2239109 -182049553 - L2 LINE L2 -19 3294 3183 219 294 166 30 chr4 2240024 2240289 -182048373 - L2 LINE L2 -399 2915 2615 367 277 0 0 chr4 2240503 2240597 -182048065 - MIR SINE MIR -69 193 100 1630 181 7 24 chr4 2242191 2242484 -182046178 + AluJo SINE Alu 5 292 -20 938 141 0 0 chr4 2242573 2242715 -182045947 + FLAM_C SINE Alu 1 142 -1 321 250 151 12 chr4 2242899 2243071 -182045591 + L1ME LINE L1 5254 5449 -713 207 0 0 0 chr4 2243139 2243162 -182045500 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 450 325 95 11 chr4 2243501 2243885 -182044777 + L1ME LINE L1 5402 5816 -354 430 232 10 0 chr4 2244209 2244308 -182044354 - L1MA4A LINE L1 -21 6282 6183 660 188 11 40 chr4 2244309 2244485 -182044177 - L1MA4A LINE L1 -183 6120 5950 2137 130 0 3 chr4 2245738 2246037 -182042625 - AluSx SINE Alu -14 298 1 304 307 70 42 chr4 2246293 2246534 -182042128 - L1M4 LINE L1 -1443 4703 4456 198 304 104 26 chr4 2247492 2247607 -182041055 - MIR SINE MIR -111 151 28 344 147 0 93 chr4 2248526 2248601 -182040061 + MIR SINE MIR 86 153 -109 311 206 62 89 chr4 2248850 2248996 -182039666 + LTR67 LTR ERVL 416 557 0 2151 141 0 0 chr4 2249528 2249825 -182038837 - AluSx SINE Alu -15 297 1 2307 115 0 3 chr4 2252046 2252359 -182036303 - AluSx SINE Alu 0 312 1 21 0 0 0 chr4 2252370 2252391 -182036271 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr4 2252413 2252433 -182036229 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 2305 75 0 69 chr4 2252610 2252928 -182035734 + AluY SINE Alu 1 296 -15 4240 174 76 32 chr4 2252955 2253097 -182035565 + L1MB7 LINE L1 4752 4886 -1298 1700 202 64 36 chr4 2253097 2253547 -182035115 + MLT1C LTR MaLR 5 467 0 4240 174 76 32 chr4 2253547 2254758 -182033904 + L1MB7 LINE L1 4886 6179 -5 1949 112 101 0 chr4 2254791 2255067 -182033595 - AluSx SINE Alu -8 304 1 350 279 51 35 chr4 2255182 2255379 -182033283 + HAL1b LINE L1 340 539 -809 2893 207 70 60 chr4 2255409 2256377 -182032285 + L1MC5 LINE L1 6530 7527 -434 2348 104 3 3 chr4 2256377 2256686 -182031976 + AluSx SINE Alu 1 309 -3 2893 207 70 60 chr4 2256686 2256821 -182031841 + L1MC5 LINE L1 7527 7659 -302 7064 176 54 49 chr4 2256835 2258144 -182030518 + L1MA4 LINE L1 14 1314 -5014 2122 125 0 0 chr4 2258144 2258457 -182030205 - AluSx SINE Alu 0 313 1 7064 176 54 49 chr4 2258457 2258743 -182029919 + L1MA4 LINE L1 1314 1597 -4731 1761 164 0 18 chr4 2258743 2259029 -182029633 + AluJo SINE Alu 2 282 -30 7064 176 54 49 chr4 2259029 2259232 -182029430 + L1MA4 LINE L1 1597 1797 -4531 2447 63 0 7 chr4 2259232 2259579 -182029083 + AluY SINE Alu 1 311 0 7064 176 54 49 chr4 2259579 2260251 -182028411 + L1MA4 LINE L1 1797 2479 -3849 5902 131 55 25 chr4 2260235 2260271 -182028391 + L1MA4 LINE L1 4712 4745 -1737 * 2549 69 0 0 chr4 2260271 2260575 -182028087 + AluY SINE Alu 1 304 -7 5902 131 55 25 chr4 2260575 2260662 -182028000 + L1MA4 LINE L1 4745 4828 -1654 2322 94 13 0 chr4 2260662 2260960 -182027702 + AluSc SINE Alu 1 302 -7 5902 131 55 25 chr4 2260960 2262549 -182026113 + L1MA4 LINE L1 4828 6475 -7 418 138 49 183 chr4 2262572 2262780 -182025882 + L1MC5 LINE L1 7645 7817 -144 2050 93 0 7 chr4 2262780 2263049 -182025613 + AluSg SINE Alu 35 301 -9 418 138 49 183 chr4 2263049 2263086 -182025576 + L1MC5 LINE L1 7817 7857 -104 2116 102 39 0 chr4 2263266 2263551 -182025111 - AluSg SINE Alu -14 296 1 27 61 0 15 chr4 2263574 2263599 -182025063 + AT_rich Low_complexity Low_complexity 1 25 -40 851 146 0 0 chr4 2263599 2263729 -182024933 + AluJ SINE Alu 1 130 -172 27 61 0 15 chr4 2263729 2263769 -182024893 + AT_rich Low_complexity Low_complexity 25 65 0 391 257 0 26 chr4 2264344 2264457 -182024205 - MIR SINE MIR -82 180 71 562 317 23 58 chr4 2264904 2265163 -182023499 - MIR SINE MIR -1 261 12 905 131 0 91 chr4 2265646 2265822 -182022840 + AluJ SINE Alu 132 291 -21 225 214 0 0 chr4 2265823 2265879 -182022783 - L1MC4 LINE L1 -1339 6703 6648 248 254 56 14 chr4 2266207 2266278 -182022384 - L2 LINE L2 -8 3305 3232 1632 158 4 36 chr4 2266375 2266653 -182022009 - AluJo SINE Alu 0 312 44 407 207 47 64 chr4 2266704 2266870 -182021792 + L1MC4 LINE L1 7084 7247 -740 723 123 66 0 chr4 2267056 2267178 -182021484 - MER53 DNA DNA -59 130 1 298 267 62 27 chr4 2267207 2267353 -182021309 + L1MC5 LINE L1 7268 7418 -543 229 243 43 14 chr4 2267379 2267449 -182021213 + L1MC4 LINE L1 7586 7657 -385 192 288 125 11 chr4 2267761 2267945 -182020717 - L2 LINE L2 -297 3016 2812 257 91 0 0 chr4 2267992 2268025 -182020637 - U2 snRNA snRNA -152 36 4 1204 285 66 2 chr4 2268034 2268487 -182020175 - L2 LINE L2 -537 2777 2296 1520 236 39 16 chr4 2269819 2270310 -182018352 + L1ME1 LINE L1 4108 4609 -1537 322 272 33 99 chr4 2270318 2270489 -182018173 + L1MDa LINE L1 1492 1676 -4750 2051 126 10 10 chr4 2270489 2270790 -182017872 - AluSx SINE Alu -11 301 1 322 272 33 99 chr4 2270790 2270926 -182017736 + L1MDa LINE L1 1676 1819 -4607 330 374 31 28 chr4 2271061 2271417 -182017245 + L2 LINE L2 2223 2579 -735 337 201 6 28 chr4 2271481 2271569 -182017093 + AluJ/monomer SINE Alu 1 45 -255 2331 206 44 125 chr4 2271822 2272057 -182016605 + L1ME1 LINE L1 5372 5624 -542 433 133 13 0 chr4 2272057 2272128 -182016534 + L1MB2 LINE L1 6096 6171 0 2331 206 44 125 chr4 2272128 2272224 -182016438 + L1ME1 LINE L1 5624 5726 -440 1479 174 0 50 chr4 2272224 2272522 -182016140 + AluJo SINE Alu 1 283 -29 315 0 0 0 chr4 2272523 2272558 -182016104 + (CAAAC)n Simple_repeat Simple_repeat 2 36 0 1781 167 3 30 chr4 2272560 2272697 -182015965 + AluSx SINE Alu 1 140 -172 2295 113 6 3 chr4 2272697 2273008 -182015654 + AluSx SINE Alu 1 312 0 1781 167 3 30 chr4 2273008 2273169 -182015493 + AluSx SINE Alu 140 291 -21 2331 206 44 125 chr4 2273169 2273635 -182015027 + L1ME1 LINE L1 5727 6104 -62 1549 147 33 50 chr4 2273635 2273934 -182014728 - AluJo SINE Alu -18 294 1 2331 206 44 125 chr4 2273934 2273985 -182014677 + L1ME1 LINE L1 6104 6158 -8 378 204 58 0 chr4 2274507 2274610 -182014052 - MER91C DNA MER1_type -1 139 31 301 135 0 104 chr4 2275907 2276003 -182012659 + (GGAGA)n Simple_repeat Simple_repeat 2 87 0 2229 114 3 7 chr4 2278128 2278434 -182010228 + AluSx SINE Alu 1 305 -7 28 22 0 22 chr4 2278733 2278755 -182009907 + AT_rich Low_complexity Low_complexity 1 22 -23 1879 163 0 7 chr4 2278755 2279044 -182009618 - AluJo SINE Alu -25 287 1 28 22 0 22 chr4 2279044 2279067 -182009595 + AT_rich Low_complexity Low_complexity 22 45 0 1977 119 32 3 chr4 2279326 2279611 -182009051 + AluSx SINE Alu 1 293 -19 456 104 0 0 chr4 2279616 2279683 -182008979 + (GGGGA)n Simple_repeat Simple_repeat 4 70 0 1830 159 0 28 chr4 2280253 2280543 -182008119 + AluJb SINE Alu 5 286 -26 1887 266 68 27 chr4 2281541 2282294 -182006368 + L1ME LINE L1 874 1644 -4436 633 149 57 71 chr4 2282379 2282520 -182006142 + FLAM_C SINE Alu 2 140 -3 2663 144 7 2 chr4 2282520 2282944 -182005718 + L1MA5 LINE L1 5490 5915 -385 * 5026 168 33 47 chr4 2282940 2283953 -182004709 - L1MC3 LINE L1 -1362 6423 5426 238 297 102 0 chr4 2286381 2286499 -182002163 + L2 LINE L2 3141 3270 -2 457 279 52 14 chr4 2286512 2286654 -182002008 - MIR SINE MIR -64 144 40 2008 119 0 0 chr4 2287216 2287493 -182001169 - AluSg SINE Alu -33 277 1 250 143 71 0 chr4 2287535 2287577 -182001085 + L2 LINE L2 3226 3270 -2 1802 128 33 4 chr4 2287975 2288278 -182000384 + AluSx SINE Alu 1 311 0 311 230 81 0 chr4 2288761 2288835 -181999827 - MER112 DNA MER1_type -58 202 123 1937 114 4 4 chr4 2289422 2289732 -181998930 - AluSg SINE Alu 0 310 1 1888 161 0 3 chr4 2289820 2290118 -181998544 + AluSx SINE Alu 1 297 -15 302 318 15 19 chr4 2290417 2290587 -181998075 + MLT1K LTR MaLR 429 572 -16 1531 164 135 50 chr4 2291789 2292018 -181996644 + L1ME3A LINE L1 15 290 -6250 217 47 47 23 chr4 2292018 2292061 -181996601 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1531 164 135 50 chr4 2292061 2292208 -181996454 + L1ME3A LINE L1 290 423 -6117 542 210 142 6 chr4 2292228 2292392 -181996270 + MER31B LTR ERV1 273 510 -4 2149 256 90 4 chr4 2292396 2293161 -181995501 + L1ME3A LINE L1 3342 4172 -2368 693 176 29 0 chr4 2293164 2293300 -181995362 + L1MC/D LINE L1 5616 5755 -487 24 53 0 0 chr4 2293374 2293412 -181995250 + AT_rich Low_complexity Low_complexity 1 38 0 2182 118 0 0 chr4 2293487 2293793 -181994869 - AluSg SINE Alu -4 306 1 27 0 0 0 chr4 2293914 2293941 -181994721 + AT_rich Low_complexity Low_complexity 1 27 0 204 341 12 0 chr4 2294088 2294170 -181994492 - L2 LINE L2 0 3272 3190 1004 273 98 55 chr4 2294290 2295400 -181993262 + L1ME3A LINE L1 5176 6341 -223 33 25 0 0 chr4 2295424 2295464 -181993198 + AT_rich Low_complexity Low_complexity 1 40 0 2104 95 14 3 chr4 2295575 2295871 -181992791 + AluSq SINE Alu 1 299 -14 2312 98 0 0 chr4 2296983 2297288 -181991374 - AluSp SINE Alu -8 305 1 430 336 38 0 chr4 2297294 2297425 -181991237 - L2 LINE L2 -5 3267 3132 973 232 92 129 chr4 2297530 2297732 -181990930 + L1ME1 LINE L1 1112 1320 -5076 2141 88 3 20 chr4 2297732 2298027 -181990635 + AluSg SINE Alu 1 290 -20 973 232 92 129 chr4 2298027 2298378 -181990284 + L1ME1 LINE L1 1320 1632 -4764 1734 142 0 21 chr4 2298378 2298691 -181989971 + AluJb SINE Alu 24 312 0 973 232 92 129 chr4 2298691 2298890 -181989772 + L1ME1 LINE L1 1632 1837 -4559 287 119 24 0 chr4 2298895 2298937 -181989725 - FLAM_A SINE Alu -32 101 59 1017 194 5 23 chr4 2298942 2299141 -181989521 + AluJo SINE Alu 99 295 -17 2280 90 0 3 chr4 2299141 2299452 -181989210 + AluSg SINE Alu 1 310 0 1017 194 5 23 chr4 2299452 2299469 -181989193 + AluJo SINE Alu 295 311 -1 333 162 133 48 chr4 2299479 2299584 -181989078 + L1ME1 LINE L1 2304 2417 -3798 291 276 0 0 chr4 2299651 2299738 -181988924 + L1ME1 LINE L1 2403 2489 -3726 * 2793 249 34 33 chr4 2299725 2301208 -181987454 + L1ME1 LINE L1 4617 6100 -135 1746 177 3 19 chr4 2301360 2301677 -181986985 - AluSx SINE Alu 0 312 1 1088 132 93 39 chr4 2301680 2301884 -181986778 - AluJo SINE Alu -11 301 87 284 302 52 85 chr4 2302181 2302429 -181986233 + L1MC/D LINE L1 5507 5746 -2062 301 291 27 14 chr4 2302773 2302921 -181985741 + HAL1b LINE L1 1191 1340 -8 2129 92 3 7 chr4 2302927 2303222 -181985440 - AluY SINE Alu -17 294 1 2429 58 7 3 chr4 2303254 2303562 -181985100 + AluY SINE Alu 1 309 -2 522 247 218 21 chr4 2303665 2304045 -181984617 + L1ME LINE L1 5267 5721 -400 289 173 214 0 chr4 2304081 2304191 -181984471 + L1ME4a LINE L1 5687 5819 -401 25 31 0 0 chr4 2305051 2305083 -181983579 + AT_rich Low_complexity Low_complexity 1 32 0 386 262 169 55 chr4 2305085 2305183 -181983479 + L1ME4a LINE L1 5827 5912 -209 2095 84 14 0 chr4 2305183 2305470 -181983192 - AluY SINE Alu -20 291 1 386 262 169 55 chr4 2305470 2305608 -181983054 + L1ME4a LINE L1 5912 6090 -31 289 219 115 31 chr4 2306522 2306618 -181982044 + MIR SINE MIR 63 166 -96 2098 102 10 3 chr4 2306779 2307083 -181981579 + AluSg SINE Alu 1 306 -4 2023 116 0 10 chr4 2307291 2307585 -181981077 - AluSx SINE Alu -21 291 1 234 147 162 59 chr4 2307679 2307747 -181980915 - MER113 DNA MER1_type? -46 475 401 266 220 55 11 chr4 2307747 2307838 -181980824 - L1MC3 LINE L1 -7 7778 7684 1334 289 94 15 chr4 2308922 2309735 -181978927 - L1ME3A LINE L1 -17 6153 5179 1695 162 3 19 chr4 2309735 2310043 -181978619 - AluJo SINE Alu -9 303 1 1334 289 94 15 chr4 2310043 2310286 -181978376 - L1ME3A LINE L1 -991 5179 4957 331 167 75 25 chr4 2310368 2310494 -181978168 - AluJb SINE Alu -7 295 238 4268 114 118 134 chr4 2310494 2311847 -181976815 + pTR5 LTR ERV1 815 2438 0 1616 131 0 0 chr4 2311855 2312091 -181976571 - AluJb SINE Alu -76 236 1 480 285 0 121 chr4 2312133 2312438 -181976224 - L1ME3A LINE L1 -1316 4830 4563 2145 114 0 7 chr4 2313396 2313703 -181974959 + AluSx SINE Alu 1 305 -7 28 22 0 22 chr4 2314003 2314025 -181974637 + AT_rich Low_complexity Low_complexity 1 22 -23 1762 163 0 7 chr4 2314025 2314314 -181974348 - AluJo SINE Alu -25 287 1 28 22 0 22 chr4 2314314 2314337 -181974325 + AT_rich Low_complexity Low_complexity 22 45 0 1856 119 32 3 chr4 2314596 2314881 -181973781 + AluSx SINE Alu 1 293 -19 456 104 0 0 chr4 2314886 2314953 -181973709 + (GGGGA)n Simple_repeat Simple_repeat 4 70 0 1715 159 0 28 chr4 2315523 2315813 -181972849 + AluJb SINE Alu 5 286 -26 195 319 28 69 chr4 2316643 2316787 -181971875 - MIR SINE MIR -32 230 93 1878 267 67 29 chr4 2316794 2317564 -181971098 + L1ME LINE L1 859 1644 -4436 634 149 57 71 chr4 2317649 2317790 -181970872 + FLAM_C SINE Alu 2 140 -3 2656 144 7 2 chr4 2317790 2318214 -181970448 + L1MA5 LINE L1 5490 5915 -385 * 4990 168 33 47 chr4 2318210 2319223 -181969439 - L1MC3 LINE L1 -1362 6423 5426 871 175 38 6 chr4 2319457 2319617 -181969045 - AluJo SINE Alu -14 298 134 1768 253 45 25 chr4 2322339 2322856 -181965806 - L1ME LINE L1 -5533 537 11 324 0 0 0 chr4 2323384 2323420 -181965242 + (TG)n Simple_repeat Simple_repeat 1 36 0 180 173 39 77 chr4 2323524 2323576 -181965086 + L2 LINE L2 3234 3283 -30 255 276 57 9 chr4 2325064 2325169 -181963493 - MIR SINE MIR -120 142 33 902 197 134 33 chr4 2325610 2325689 -181962973 + MLT1E LTR MaLR 243 313 -280 2043 104 12 61 chr4 2325689 2326017 -181962645 + AluSx SINE Alu 1 312 0 902 197 134 33 chr4 2326017 2326219 -181962443 + MLT1E LTR MaLR 313 592 -1 222 294 96 0 chr4 2326220 2326356 -181962306 - L2 LINE L2 -255 3058 2910 230 318 0 0 chr4 2326829 2326892 -181961770 + GA-rich Low_complexity Low_complexity 5 67 0 441 110 0 0 chr4 2328315 2328388 -181960274 + (GA)n Simple_repeat Simple_repeat 1 73 0 1378 256 105 67 chr4 2328399 2328989 -181959673 - L1M4 LINE L1 -5727 815 249 2151 99 3 0 chr4 2328989 2329281 -181959381 - AluSg SINE Alu -17 293 1 1378 256 105 67 chr4 2329281 2329308 -181959354 - L1M4 LINE L1 -6293 249 224 701 168 8 46 chr4 2329308 2329439 -181959223 - AluJo SINE Alu -172 130 5 1378 256 105 67 chr4 2329439 2329601 -181959061 - L1M4 LINE L1 -6318 224 5 1767 143 3 21 chr4 2329765 2330051 -181958611 + AluJb SINE Alu 1 281 -31 22 0 0 0 chr4 2330086 2330108 -181958554 + AT_rich Low_complexity Low_complexity 1 22 0 6495 182 20 18 chr4 2330167 2330552 -181958110 + L1MC3 LINE L1 6488 6871 -914 225 0 0 0 chr4 2330552 2330577 -181958085 + (CA)n Simple_repeat Simple_repeat 1 25 0 6495 182 20 18 chr4 2330577 2331485 -181957177 + L1MC3 LINE L1 6871 7784 -1 1540 126 4 8 chr4 2331492 2331730 -181956932 + AluJb SINE Alu 76 312 0 442 368 96 21 chr4 2331902 2332329 -181956333 + L1M4 LINE L1 4259 4717 -1429 303 260 41 89 chr4 2332679 2332825 -181955837 + L1M4 LINE L1 4917 5055 -1091 7359 206 18 48 chr4 2332901 2335864 -181952798 + L1M2 LINE L1 10 2867 -3982 1484 153 43 0 chr4 2335866 2336148 -181952514 - L1M4 LINE L1 -368 5816 5523 310 323 264 0 chr4 2336644 2336997 -181951665 + L2 LINE L2 2239 2684 -630 353 232 143 0 chr4 2337042 2337154 -181951508 + HAL1 LINE L1 5 132 -2375 474 18 0 0 chr4 2337435 2337490 -181951172 + (ATG)n Simple_repeat Simple_repeat 2 56 0 264 322 0 33 chr4 2337510 2337600 -181951062 + L2 LINE L2 1868 1954 -1360 829 316 58 69 chr4 2338286 2338893 -181949769 - L1M4 LINE L1 -1254 5687 5088 212 320 190 28 chr4 2339097 2339350 -181949312 - L2 LINE L2 -562 2752 2459 180 353 47 0 chr4 2339389 2339474 -181949188 - L2 LINE L2 -967 2347 2259 191 281 90 42 chr4 2339606 2339773 -181948889 + L2 LINE L2 2909 3083 -189 473 307 95 26 chr4 2339855 2340086 -181948576 + MIR SINE MIR 16 262 0 2215 265 80 57 chr4 2341130 2341629 -181947033 - L1MCc LINE L1 -3614 3327 2841 22366 24 0 0 chr4 2341629 2345030 -181943632 + L1PA4 LINE L1 2746 6153 -2 2215 265 80 57 chr4 2345030 2345208 -181943454 - L1MCc LINE L1 -4100 2841 2669 2015 131 3 0 chr4 2345208 2345530 -181943132 + AluSx SINE Alu 1 323 0 1795 174 3 0 chr4 2345531 2345824 -181942838 - AluJb SINE Alu -18 294 1 2215 265 80 57 chr4 2345824 2346667 -181941995 - L1MCc LINE L1 -4272 2669 1578 1903 136 3 10 chr4 2346667 2346834 -181941828 - AluSx SINE Alu -6 306 140 189 0 0 0 chr4 2346834 2346855 -181941807 + (TA)n Simple_repeat Simple_repeat 1 21 0 1903 136 3 10 chr4 2346855 2346995 -181941667 - AluSx SINE Alu -172 140 1 2215 265 80 57 chr4 2346995 2347417 -181941245 - L1MCc LINE L1 -5363 1578 1167 265 234 4 32 chr4 2347658 2347738 -181940924 - MIR SINE MIR -61 147 69 213 182 0 0 chr4 2347864 2347897 -181940765 + C-rich Low_complexity Low_complexity 1 33 0 182 276 52 17 chr4 2349508 2349566 -181939096 - MIR SINE MIR -67 141 82 183 269 104 0 chr4 2349915 2349982 -181938680 - L2 LINE L2 -52 3261 3188 237 98 16 49 chr4 2351380 2351441 -181937221 + (CCCG)n Simple_repeat Simple_repeat 1 59 0 204 182 0 0 chr4 2355344 2355388 -181933274 + (TG)n Simple_repeat Simple_repeat 1 44 0 386 385 0 22 chr4 2355412 2355594 -181933068 + (CGTG)n Simple_repeat Simple_repeat 2 179 0 * 517 344 6 6 chr4 2355490 2355670 -181932992 + (TG)n Simple_repeat Simple_repeat 1 180 0 414 320 11 17 chr4 2355744 2355925 -181932737 + (TG)n Simple_repeat Simple_repeat 1 180 0 269 333 11 0 chr4 2358409 2358499 -181930163 + MIR SINE MIR 105 195 -67 202 320 13 0 chr4 2359636 2359714 -181928948 + (CA)n Simple_repeat Simple_repeat 1 79 0 534 173 39 47 chr4 2365706 2365833 -181922829 - AluSg/x SINE Alu -2 310 185 1739 131 34 37 chr4 2366177 2366474 -181922188 - AluJb SINE Alu -16 296 1 206 278 10 0 chr4 2366680 2366777 -181921885 + (TG)n Simple_repeat Simple_repeat 2 99 0 2187 104 7 0 chr4 2366830 2367128 -181921534 - AluSx SINE Alu -12 300 1 2074 121 3 3 chr4 2369486 2369793 -181918869 - AluSx SINE Alu -5 307 1 328 169 28 0 chr4 2369995 2370066 -181918596 - MER69 DNA AcHobo -3 2523 2451 * 414 248 88 9 chr4 2370065 2370178 -181918484 - MER69 DNA AcHobo -1854 672 551 1129 330 67 16 chr4 2370306 2371070 -181917592 - L1MEc LINE L1 -5557 839 37 853 297 147 5 chr4 2371070 2371491 -181917171 - MER69 DNA AcHobo -1982 544 64 200 321 47 28 chr4 2371940 2372046 -181916616 + L2 LINE L2 3120 3227 -86 865 310 81 52 chr4 2372391 2372871 -181915791 - L1ME LINE L1 -2976 3104 2611 184 274 274 0 chr4 2373465 2373567 -181915095 - L2 LINE L2 0 3272 3143 755 160 0 76 chr4 2373729 2373873 -181914789 + FLAM_C SINE Alu 1 133 0 290 300 75 59 chr4 2373888 2374130 -181914532 + MIR SINE MIR 8 256 -6 995 208 68 12 chr4 2375009 2375346 -181913316 - L1ME LINE L1 -5133 937 582 2720 194 5 52 chr4 2475347 2475976 -181812686 + LTR49-int LTR ERV1 1987 2585 -3746 6189 227 63 43 chr4 2575979 2576433 -181712229 + L1MEc LINE L1 333 776 -5439 2356 99 3 13 chr4 2576433 2576747 -181711915 + AluSp SINE Alu 1 311 -2 2222 83 42 3 chr4 2576748 2577036 -181711626 + AluY SINE Alu 1 299 -12 6189 227 63 43 chr4 2577036 2577865 -181710797 + L1MEc LINE L1 776 1586 -4629 2430 71 0 40 chr4 2577865 2578188 -181710474 + AluY SINE Alu 1 310 -1 6189 227 63 43 chr4 2578188 2580462 -181708200 + L1MEc LINE L1 1586 3924 -2291 300 290 37 11 chr4 2580462 2580551 -181708111 + MER5B DNA MER1_type 61 163 -26 270 299 56 56 chr4 2580839 2580946 -181707716 + MIR3 SINE MIR 95 201 -7 2238 36 4 4 chr4 2581072 2581346 -181707316 + L1PA3 LINE L1 5880 6153 -2 258 250 140 20 chr4 2581390 2581490 -181707172 - L2 LINE L2 -9 3304 3193 996 219 165 37 chr4 2581548 2581844 -181706818 + L1MEc LINE L1 3908 4270 -1945 345 24 0 0 chr4 2581844 2581886 -181706776 + (CA)n Simple_repeat Simple_repeat 2 43 0 996 219 165 37 chr4 2581886 2581990 -181706672 + L1MEc LINE L1 4270 4359 -1856 2673 46 0 0 chr4 2582002 2582308 -181706354 + AluY SINE Alu 1 306 -5 3209 197 45 38 chr4 2582309 2583146 -181705516 + MER21B LTR ERV1 1 843 -20 327 241 0 0 chr4 2583164 2583251 -181705411 + L1MEc LINE L1 4354 4440 -1775 2178 105 0 0 chr4 2583251 2583528 -181705134 + AluSx SINE Alu 1 277 -35 945 203 30 0 chr4 2583528 2583725 -181704937 - MER21B LTR ERV1 -194 669 467 1107 209 67 4 chr4 2583775 2584000 -181704662 + MER8 DNA MER2_type 1 239 0 256 219 0 41 chr4 2584194 2584267 -181704395 + GA-rich Low_complexity Low_complexity 1 70 0 2421 105 0 0 chr4 2586273 2586578 -181702084 - AluSq SINE Alu -8 305 1 585 0 0 0 chr4 2587018 2587083 -181701579 + (TA)n Simple_repeat Simple_repeat 1 65 0 2354 109 0 0 chr4 2587089 2587392 -181701270 - AluSg SINE Alu -7 303 1 1850 163 3 3 chr4 2587402 2587690 -181700972 - AluJo SINE Alu -24 288 1 1992 124 0 59 chr4 2588673 2588980 -181699682 - AluSx SINE Alu -22 290 2 384 376 6 0 chr4 2589932 2590094 -181698568 + (TG)n Simple_repeat Simple_repeat 1 163 0 1493 185 10 89 chr4 2590483 2590594 -181698068 + MLT1B LTR MaLR 1 119 -271 1814 148 0 43 chr4 2590594 2590753 -181697909 - AluJo SINE Alu -20 292 151 2326 80 0 22 chr4 2590753 2591065 -181697597 - AluY SINE Alu -6 305 1 1814 148 0 43 chr4 2591065 2591210 -181697452 - AluJo SINE Alu -161 151 1 1493 185 10 89 chr4 2591210 2591504 -181697158 + MLT1B LTR MaLR 119 374 -16 444 67 0 0 chr4 2592174 2592234 -181696428 + (CA)n Simple_repeat Simple_repeat 1 60 0 1668 190 122 117 chr4 2595021 2595594 -181693068 + MER70B LTR ERVL 1 576 -2 322 324 41 14 chr4 2595597 2595742 -181692920 - MIR SINE MIR -77 185 37 254 153 85 17 chr4 2599829 2599888 -181688774 - L1MB7 LINE L1 -10 6174 6112 739 104 0 0 chr4 2599915 2600021 -181688641 + FLAM_C SINE Alu 37 142 -1 1020 178 23 0 chr4 2600021 2600195 -181688467 + AluJb SINE Alu 105 282 -30 2871 198 96 14 chr4 2600195 2600916 -181687746 - L1MB7 LINE L1 -57 6127 5348 900 221 82 41 chr4 2601287 2601635 -181687027 + MLT1C LTR MaLR 42 411 -56 2312 101 3 0 chr4 2601652 2601960 -181686702 - AluSc SINE Alu 0 309 1 191 36 36 0 chr4 2603460 2603488 -181685174 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 283 309 0 0 chr4 2605200 2605284 -181683378 + (TGG)n Simple_repeat Simple_repeat 1 84 0 3364 191 80 25 chr4 2608005 2608950 -181679712 - L1MB5 LINE L1 0 6174 5152 3569 22 0 0 chr4 2608950 2609360 -181679302 - L1PA2 LINE L1 0 6155 5746 3364 191 80 25 chr4 2609360 2609472 -181679190 - L1MB5 LINE L1 -1022 5152 5048 1397 168 111 0 chr4 2609473 2609770 -181678892 - MLT2D LTR ERVL -8 406 77 1602 206 30 0 chr4 2611000 2611301 -181677361 - AluJo SINE Alu -2 310 1 6439 145 38 58 chr4 2611324 2612377 -181676285 - L1MB7 LINE L1 -845 5301 4229 2137 110 0 0 chr4 2612377 2612659 -181676003 + AluSg SINE Alu 1 282 -28 180 0 0 0 chr4 2612659 2612679 -181675983 + (TA)n Simple_repeat Simple_repeat 2 21 0 6439 145 38 58 chr4 2612679 2613151 -181675511 - L1MB7 LINE L1 -1915 4231 3805 3998 170 62 9 chr4 2613150 2614044 -181674618 + L1MA7 LINE L1 5341 6281 -10 * 580 126 0 0 chr4 2614062 2614157 -181674505 - MLT2D LTR ERVL -319 95 1 2199 211 27 9 chr4 2614187 2614746 -181673916 - L1MB5 LINE L1 -1188 4958 4390 770 110 0 0 chr4 2614777 2614904 -181673758 + L1MB4 LINE L1 5786 5912 -271 287 49 0 0 chr4 2614905 2614946 -181673716 - MADE1 DNA Mariner 0 80 40 280 125 36 0 chr4 2614948 2615004 -181673658 + L1MB4 LINE L1 6123 6180 0 232 288 16 24 chr4 2615153 2615278 -181673384 - L1ME LINE L1 -325 5796 5673 836 203 52 48 chr4 2615399 2615650 -181673012 + L1MB8 LINE L1 5914 6165 -13 237 253 6 69 chr4 2615834 2616008 -181672654 + GA-rich Low_complexity Low_complexity 3 165 0 367 243 0 42 chr4 2616405 2616549 -181672113 + GA-rich Low_complexity Low_complexity 2 139 0 777 167 0 67 chr4 2616728 2616878 -181671784 + FLAM_C SINE Alu 1 140 -3 211 358 15 0 chr4 2617919 2617986 -181670676 + L2 LINE L2 3241 3308 -5 342 344 0 16 chr4 2618521 2618704 -181669958 + C-rich Low_complexity Low_complexity 1 180 0 183 98 0 78 chr4 2620105 2620156 -181668506 + (CCCCCT)n Simple_repeat Simple_repeat 2 48 0 955 224 117 13 chr4 2620516 2620815 -181667847 + LTR53 LTR ERVL 190 519 0 217 203 51 13 chr4 2622028 2622186 -181666476 + (AGGTG)n Simple_repeat Simple_repeat 3 166 0 182 224 48 0 chr4 2622202 2622349 -181666313 + (TGAG)n Simple_repeat Simple_repeat 3 156 0 1478 176 40 0 chr4 2622890 2623163 -181665499 + AluJo SINE Alu 5 288 -24 1911 131 0 17 chr4 2623593 2623907 -181664755 + AluSx SINE Alu 1 309 0 1796 115 51 14 chr4 2624102 2624397 -181664265 - AluY SINE Alu -2 309 4 342 139 0 0 chr4 2625178 2625250 -181663412 + (GGGGA)n Simple_repeat Simple_repeat 2 73 0 205 222 67 0 chr4 2626290 2626352 -181662310 + MIR SINE MIR 89 153 -62 1995 108 0 0 chr4 2627026 2627294 -181661368 + AluSx SINE Alu 1 268 -44 186 359 13 0 chr4 2627581 2627659 -181661003 + MIR SINE MIR 61 139 -69 896 186 0 0 chr4 2627684 2627845 -181660817 - FRAM SINE Alu -14 162 2 392 263 8 45 chr4 2628465 2628598 -181660064 - L1ME LINE L1 -457 5664 5537 22 35 0 0 chr4 2628763 2628792 -181659870 + AT_rich Low_complexity Low_complexity 1 29 0 390 234 75 0 chr4 2629120 2629227 -181659435 + L2 LINE L2 3187 3301 -12 698 264 125 0 chr4 2629227 2629443 -181659219 + L1MEc LINE L1 34 276 -6120 207 162 0 0 chr4 2629494 2629531 -181659131 + GA-rich Low_complexity Low_complexity 4 40 0 1681 181 7 16 chr4 2629634 2629944 -181658718 - AluJo SINE Alu -3 309 3 244 228 0 0 chr4 2629951 2630008 -181658654 + L1ME4a LINE L1 6061 6117 -4 209 276 67 75 chr4 2630982 2631116 -181657546 + L2 LINE L2 3138 3270 -2 1084 291 59 0 chr4 2632314 2632720 -181655942 + L1MB7 LINE L1 5477 5906 -278 397 311 50 93 chr4 2635750 2636030 -181652632 - L2 LINE L2 0 3272 3005 239 281 0 0 chr4 2636206 2636263 -181652399 - L1ME3A LINE L1 -69 6170 6114 524 151 35 126 chr4 2636422 2636621 -181652041 - MER53 DNA DNA -6 183 3 308 351 161 0 chr4 2636626 2636837 -181651825 - L1ME3A LINE L1 -306 5933 5689 1256 243 71 42 chr4 2636898 2637343 -181651319 - L1ME3A LINE L1 -651 5584 5107 1525 159 37 40 chr4 2637343 2637639 -181651023 - AluJo SINE Alu -15 297 3 1256 243 71 42 chr4 2637639 2637946 -181650716 - L1ME3A LINE L1 -1128 5107 4810 198 0 0 0 chr4 2637962 2637984 -181650678 + (TTC)n Simple_repeat Simple_repeat 3 24 0 804 219 0 0 chr4 2637986 2638132 -181650530 - FRAM SINE Alu -30 146 1 356 252 135 0 chr4 2638153 2638264 -181650398 + L1ME LINE L1 5645 5770 -400 343 206 0 0 chr4 2638278 2638346 -181650316 - L1ME3A LINE L1 -1464 4751 4684 231 167 0 0 chr4 2638346 2638388 -181650274 + GA-rich Low_complexity Low_complexity 1 42 0 312 374 83 0 chr4 2638388 2638618 -181650044 + L1M4c LINE L1 947 1195 -5189 395 345 55 0 chr4 2638657 2638877 -181649785 - L1ME3A LINE L1 -1538 4677 4446 1335 185 188 28 chr4 2638877 2639271 -181649391 + MSTB2 LTR MaLR 1 457 0 825 243 45 39 chr4 2639274 2639583 -181649079 - L1ME3A LINE L1 -1774 4441 4131 2022 247 33 54 chr4 2639712 2639896 -181648766 - L1ME3A LINE L1 -2163 4052 3866 1774 190 0 0 chr4 2639896 2640196 -181648466 - AluJb SINE Alu -10 302 3 2022 247 33 54 chr4 2640196 2640381 -181648281 - L1ME3A LINE L1 -2349 3866 3679 1757 189 3 0 chr4 2640381 2640678 -181647984 + AluJb SINE Alu 1 298 -14 2022 247 33 54 chr4 2640678 2641103 -181647559 - L1ME3A LINE L1 -2536 3679 3277 2034 128 0 7 chr4 2641103 2641399 -181647263 + AluSg SINE Alu 1 294 -16 2022 247 33 54 chr4 2641399 2641633 -181647029 - L1ME3A LINE L1 -2938 3277 3040 1033 192 0 0 chr4 2641634 2641816 -181646846 - AluJo SINE Alu -10 302 121 458 173 0 37 chr4 2641892 2641973 -181646689 + AluSc SINE Alu 122 199 -110 688 118 0 0 chr4 2641975 2642068 -181646594 - AluJ/FLAM SINE Alu -218 94 2 1289 269 50 76 chr4 2642074 2642123 -181646539 - L1MEc LINE L1 -3184 3031 2982 637 180 62 23 chr4 2642123 2642251 -181646411 + FLAM_C SINE Alu 1 133 0 1289 269 50 76 chr4 2642251 2642306 -181646356 - L1MEc LINE L1 -3233 2982 2927 2514 45 3 0 chr4 2642306 2642614 -181646048 + AluY SINE Alu 1 309 -2 1992 138 0 3 chr4 2642622 2642920 -181645742 + AluSx SINE Alu 1 297 -15 1289 269 50 76 chr4 2642920 2643108 -181645554 - L1MEc LINE L1 -3295 2920 2729 1566 201 10 0 chr4 2643108 2643417 -181645245 - AluJo SINE Alu 0 312 1 1289 269 50 76 chr4 2643417 2643447 -181645215 - L1MEc LINE L1 -3486 2729 2700 1769 106 81 21 chr4 2643447 2643730 -181644932 + AluSx SINE Alu 5 304 -8 1289 269 50 76 chr4 2643730 2644453 -181644209 - L1MEc LINE L1 -3515 2700 2023 1727 137 28 11 chr4 2644651 2644935 -181643727 - AluJo SINE Alu -23 289 1 964 249 63 86 chr4 2644946 2645139 -181643523 - L1MEc LINE L1 -4634 1762 1566 1886 123 44 0 chr4 2645139 2645432 -181643230 - AluSx SINE Alu -6 306 1 964 249 63 86 chr4 2645432 2646028 -181642634 - L1MEc LINE L1 -4830 1566 991 1801 154 6 40 chr4 2646041 2646365 -181642297 - 7SLRNA srpRNA srpRNA -6 314 2 1999 116 0 0 chr4 2646545 2646829 -181641833 - AluY SINE Alu -5 306 23 2182 112 3 10 chr4 2646832 2647146 -181641516 - AluSx SINE Alu 0 312 1 2156 112 3 0 chr4 2647485 2647790 -181640872 - AluSx SINE Alu -6 306 1 1913 85 4 0 chr4 2648134 2648382 -181640280 + AluSx SINE Alu 1 249 -63 862 157 42 48 chr4 2648621 2648787 -181639875 + AluJo SINE Alu 6 170 -142 1886 89 4 0 chr4 2749378 2749614 -181539048 + AluSg SINE Alu 59 295 -15 740 118 97 28 chr4 2749629 2749773 -181538889 + Tigger7 DNA MER2_type 2311 2464 -27 1382 109 0 0 chr4 2749780 2749955 -181538707 + AluSq SINE Alu 1 175 -138 223 25 50 25 chr4 2749962 2750002 -181538660 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 1537 155 200 70 chr4 2750080 2750325 -181538337 + Tigger3b DNA MER2_type 1 213 -2815 2312 103 0 25 chr4 2750325 2750645 -181538017 - AluSq SINE Alu -1 312 1 1537 155 200 70 chr4 2750645 2750691 -181537971 + Tigger3b DNA MER2_type 213 252 -2776 1477 189 71 27 chr4 2750691 2750988 -181537674 + AluJb SINE Alu 1 310 -2 1537 155 200 70 chr4 2750988 2751179 -181537483 + Tigger3b DNA MER2_type 252 547 -684 2140 136 0 10 chr4 2751208 2751518 -181537144 + AluSg SINE Alu 1 307 -3 320 260 81 16 chr4 2751528 2751651 -181537011 + L1M4 LINE L1 3826 3956 -2190 1324 120 43 14 chr4 2751652 2751861 -181536801 + AluSg/x SINE Alu 96 310 -2 2327 88 3 7 chr4 2751887 2752181 -181536481 + AluSx SINE Alu 13 305 -7 670 178 0 15 chr4 2752314 2752449 -181536213 + FLAM_C SINE Alu 1 133 0 2334 97 0 0 chr4 2752477 2752775 -181535887 + AluSx SINE Alu 1 298 -14 227 368 74 0 chr4 2758574 2758737 -181529925 + MIR SINE MIR 70 244 -18 2269 110 7 0 chr4 2760304 2760603 -181528059 + AluSq SINE Alu 1 301 -12 2235 109 20 0 chr4 2760606 2760910 -181527752 + AluSq SINE Alu 4 313 0 2185 95 3 7 chr4 2760910 2761266 -181527396 + AluSp SINE Alu 1 355 0 1735 178 30 3 chr4 2761675 2761979 -181526683 + AluJb SINE Alu 1 312 0 269 109 22 0 chr4 2762588 2762634 -181526028 + CT-rich Low_complexity Low_complexity 2 48 0 1906 170 0 16 chr4 2762952 2763269 -181525393 + AluJb SINE Alu 1 312 0 2018 161 7 0 chr4 2763340 2763644 -181525018 + AluSx SINE Alu 1 306 -6 1349 122 149 9 chr4 2763872 2764094 -181524568 + AluSg1 SINE Alu 53 305 -4 2564 64 0 0 chr4 2764193 2764490 -181524172 + AluY SINE Alu 1 297 -14 2339 101 3 16 chr4 2764785 2765101 -181523561 + AluSx SINE Alu 1 312 0 1188 99 0 0 chr4 2765101 2765295 -181523367 + AluY SINE Alu 132 325 0 515 206 204 21 chr4 2765305 2765603 -181523059 + L1ME LINE L1 5327 5659 -511 669 161 0 8 chr4 2765749 2765867 -181522795 - FLAM_A SINE Alu -8 134 18 205 307 110 24 chr4 2766255 2766382 -181522280 - MIR3 SINE MIR -41 167 30 1546 163 3 83 chr4 2766651 2766951 -181521711 + AluJo SINE Alu 7 282 -30 1370 104 0 0 chr4 2766951 2767124 -181521538 - AluSg/x SINE Alu -6 304 132 2253 93 41 0 chr4 2767124 2767415 -181521247 - AluSg SINE Alu -7 303 1 265 297 148 33 chr4 2768556 2768738 -181519924 - MIR SINE MIR -7 255 53 2414 88 0 10 chr4 2769640 2769946 -181518716 - AluSg1 SINE Alu -6 303 1 21 0 0 0 chr4 2770214 2770235 -181518427 + AT_rich Low_complexity Low_complexity 1 21 0 2069 110 58 3 chr4 2770245 2770537 -181518125 + AluSp SINE Alu 1 308 -5 427 115 0 0 chr4 2870539 2870600 -181418062 + AluS SINE Alu 233 293 -18 1574 156 10 27 chr4 2872342 2872637 -181416025 + AluJo SINE Alu 1 290 -22 1886 127 37 3 chr4 2872880 2873180 -181415482 + AluSx SINE Alu 1 310 -2 873 184 13 0 chr4 2873616 2873774 -181414888 - FRAM SINE Alu -16 160 1 3151 203 116 93 chr4 2874482 2874900 -181413762 - Charlie7 DNA MER1_type -111 2501 2094 2414 51 0 29 chr4 2874900 2875215 -181413447 + AluY SINE Alu 1 306 -5 3151 203 116 93 chr4 2875215 2875448 -181413214 - Charlie7 DNA MER1_type -518 2094 1868 2076 103 10 3 chr4 2875448 2875740 -181412922 - AluSx SINE Alu -18 294 1 3151 203 116 93 chr4 2875740 2875801 -181412861 - Charlie7 DNA MER1_type -744 1868 1810 2308 75 0 0 chr4 2875801 2876096 -181412566 + AluY SINE Alu 1 295 -16 3151 203 116 93 chr4 2876096 2876592 -181412070 - Charlie7 DNA MER1_type -802 1810 1327 2051 114 7 10 chr4 2876592 2876898 -181411764 + AluSc SINE Alu 1 305 -4 3151 203 116 93 chr4 2876898 2877052 -181411610 - Charlie7 DNA MER1_type -1285 1327 1178 1399 144 59 46 chr4 2877052 2877357 -181411305 + AluJo SINE Alu 1 309 -3 3151 203 116 93 chr4 2877357 2877531 -181411131 - Charlie7 DNA MER1_type -1434 1178 926 1608 148 34 17 chr4 2877770 2878061 -181410601 + AluJb SINE Alu 1 296 -16 1210 238 127 19 chr4 2878171 2878582 -181410080 - Charlie7 DNA MER1_type -1749 863 409 646 169 113 8 chr4 2878606 2878730 -181409932 - FLAM_C SINE Alu -4 139 3 2351 88 0 0 chr4 2878911 2879219 -181409443 + AluSg SINE Alu 1 308 -2 2133 106 3 0 chr4 2879227 2879530 -181409132 + AluSg SINE Alu 2 305 -5 1573 160 11 14 chr4 2879706 2879988 -181408674 - AluJo SINE Alu -31 281 1 281 310 14 0 chr4 2880036 2880107 -181408555 - MIR3 SINE MIR -23 185 114 2247 95 0 0 chr4 2880357 2880661 -181408001 + AluSx SINE Alu 1 304 -8 1843 147 3 7 chr4 2880672 2880972 -181407690 + AluSx SINE Alu 1 299 -13 809 140 0 37 chr4 2881202 2881338 -181407324 + AluJ SINE Alu 1 131 -181 2058 92 58 3 chr4 2881912 2882207 -181406455 + AluSq SINE Alu 1 311 -2 876 222 0 0 chr4 2882560 2882722 -181405940 + AluJ SINE Alu 137 298 -4 287 234 9 56 chr4 2882844 2882951 -181405711 + MIR3 SINE MIR 106 207 -1 1862 143 10 3 chr4 2883135 2883436 -181405226 - AluSx SINE Alu -9 303 1 1086 216 7 33 chr4 2883465 2883738 -181404924 + AluJo SINE Alu 1 266 -46 1937 136 13 7 chr4 2883853 2884163 -181404499 - AluSx SINE Alu 0 312 1 2189 92 0 7 chr4 2884189 2884483 -181404179 - AluSc SINE Alu -17 292 1 846 181 99 45 chr4 2884600 2884821 -181403841 + L1MD3 LINE L1 7696 7928 -67 1840 149 24 24 chr4 2884846 2885175 -181403487 + MER44D DNA MER2_type 11 609 0 403 92 0 0 chr4 2885175 2885240 -181403422 + L1MC3 LINE L1 7721 7785 0 1498 166 6 110 chr4 2885461 2885650 -181403012 - AluJb SINE Alu -9 293 86 2111 89 10 3 chr4 2885650 2885943 -181402719 + AluSc SINE Alu 1 295 -14 1498 166 6 110 chr4 2885943 2885958 -181402704 - AluJb SINE Alu -216 86 71 1898 115 31 0 chr4 2885958 2886245 -181402417 + AluSq SINE Alu 1 296 -17 2181 82 3 0 chr4 2886253 2886545 -181402117 + AluY SINE Alu 16 308 -3 1498 166 6 110 chr4 2886545 2886656 -181402006 - AluJb SINE Alu -238 64 2 299 173 0 19 chr4 2886769 2886821 -181401841 - Alu SINE Alu -250 52 2 2304 223 106 66 chr4 2887168 2887770 -181400892 + L1ME1 LINE L1 2226 2802 -3344 2008 120 0 3 chr4 2887770 2888071 -181400591 + AluSg SINE Alu 1 300 -10 2304 223 106 66 chr4 2888071 2888103 -181400559 + L1ME1 LINE L1 2802 2831 -3315 2002 138 51 28 chr4 2888103 2888459 -181400203 - THE1B LTR MaLR 0 364 1 2304 223 106 66 chr4 2888459 2888491 -181400171 + L1ME1 LINE L1 2831 2860 -3286 2202 80 0 0 chr4 2888491 2888780 -181399882 + AluSc SINE Alu 17 305 -4 2304 223 106 66 chr4 2888780 2888805 -181399857 + L1ME1 LINE L1 2860 2883 -3263 814 206 6 24 chr4 2888805 2888970 -181399692 - FAM SINE Alu -13 162 1 2304 223 106 66 chr4 2888970 2889006 -181399656 + L1ME1 LINE L1 2883 2916 -3230 1812 151 10 3 chr4 2889006 2889310 -181399352 + AluSx SINE Alu 1 306 -6 2160 75 4 0 chr4 2889317 2889620 -181399042 + AluY SINE Alu 1 304 0 2304 223 106 66 chr4 2889620 2889705 -181398957 + L1ME1 LINE L1 2921 3001 -3145 1612 173 0 31 chr4 2889705 2889842 -181398820 + AluJo SINE Alu 3 143 -169 2458 56 0 0 chr4 2889842 2890145 -181398517 + AluY SINE Alu 1 303 -8 1612 173 0 31 chr4 2890145 2890325 -181398337 + AluJo SINE Alu 143 310 -2 2304 223 106 66 chr4 2890325 2890639 -181398023 + L1ME1 LINE L1 3001 3412 -2734 544 247 45 56 chr4 2890654 2890705 -181397957 + L1ME1 LINE L1 3609 3659 -2487 1272 181 17 0 chr4 2890705 2890937 -181397725 + MER46A DNA MER2_type 1 236 0 544 247 45 56 chr4 2890937 2891067 -181397595 + L1ME1 LINE L1 3659 3789 -2357 2091 88 3 10 chr4 2891067 2891417 -181397245 + AluY SINE Alu 14 311 0 2136 85 4 0 chr4 2891421 2891726 -181396936 + AluSp SINE Alu 4 309 0 544 247 45 56 chr4 2891726 2891804 -181396858 + L1ME1 LINE L1 3792 3872 -2274 1695 169 0 28 chr4 2891808 2892128 -181396534 + AluSx SINE Alu 1 311 -1 2022 133 0 3 chr4 2892128 2892429 -181396233 + AluSg SINE Alu 1 301 -9 460 214 12 89 chr4 2892429 2892458 -181396204 + L1ME1 LINE L1 5027 5057 -1089 2768 13 0 0 chr4 2892458 2892769 -181395893 + AluYa5 SINE Alu 1 311 0 460 214 12 89 chr4 2892769 2892907 -181395755 + L1ME1 LINE L1 5057 5181 -965 1972 126 7 10 chr4 2892918 2893228 -181395434 + AluSx SINE Alu 3 311 -1 1136 231 70 107 chr4 2893230 2893396 -181395266 + L1MB2 LINE L1 5024 5195 -976 1926 148 0 0 chr4 2893396 2893686 -181394976 + AluSx SINE Alu 1 290 -22 1136 231 70 107 chr4 2893686 2893782 -181394880 + L1MB2 LINE L1 5195 5293 -878 2177 91 7 0 chr4 2893782 2894080 -181394582 + AluSq SINE Alu 1 300 -13 1136 231 70 107 chr4 2894080 2894227 -181394435 + L1MB2 LINE L1 5293 5444 -727 1973 129 3 0 chr4 2894227 2894521 -181394141 + AluSx SINE Alu 1 295 -17 321 68 0 0 chr4 2894522 2894566 -181394096 + (CA)n Simple_repeat Simple_repeat 2 45 0 1136 231 70 107 chr4 2894566 2894602 -181394060 + L1MB2 LINE L1 5444 5480 -691 899 211 131 65 chr4 2894602 2894726 -181393936 + AluJo SINE Alu 1 115 -187 223 37 0 0 chr4 2894726 2894753 -181393909 + (TTA)n Simple_repeat Simple_repeat 2 180 0 1907 123 0 20 chr4 2894753 2895046 -181393616 - AluSq SINE Alu -26 287 1 899 211 131 65 chr4 2895046 2895082 -181393580 + AluJo SINE Alu 112 291 -9 681 180 9 0 chr4 2895082 2895193 -181393469 + AluSq/x SINE Alu 14 125 -188 1136 231 70 107 chr4 2895195 2895655 -181393007 + L1MB2 LINE L1 5480 5921 -250 * 2236 234 58 30 chr4 2895213 2895850 -181392812 + L1ME1 LINE L1 5468 6122 -44 1308 189 10 69 chr4 2895861 2895992 -181392670 + AluJo SINE Alu 1 138 -174 2208 92 0 0 chr4 2895992 2896284 -181392378 - AluSg SINE Alu -18 292 1 1308 189 10 69 chr4 2896284 2896458 -181392204 + AluJo SINE Alu 138 288 -24 730 247 105 34 chr4 2896513 2896859 -181391803 + L1ME3A LINE L1 5556 5932 -234 2379 75 0 0 chr4 2896859 2897164 -181391498 + AluSx SINE Alu 1 305 -7 730 247 105 34 chr4 2897164 2897209 -181391453 + L1ME3A LINE L1 5932 5972 -194 1184 216 7 49 chr4 2897265 2897432 -181391230 - AluJo SINE Alu -14 298 148 2126 94 0 10 chr4 2897432 2897731 -181390931 - AluSg SINE Alu -14 296 1 1184 216 7 49 chr4 2897731 2897869 -181390793 - AluJo SINE Alu -164 148 6 1956 122 0 46 chr4 2898249 2898576 -181390086 - AluSx SINE Alu 0 312 1 762 148 0 87 chr4 2898584 2898733 -181389929 - AluJb SINE Alu -173 139 4 1933 126 3 7 chr4 2898765 2899066 -181389596 + AluSc SINE Alu 1 300 -9 1926 96 0 83 chr4 2899707 2899846 -181388816 + AluSx SINE Alu 1 99 -213 1929 125 31 0 chr4 2899846 2900133 -181388529 + AluSg SINE Alu 1 296 -14 1926 96 0 83 chr4 2900133 2900317 -181388345 + AluSx SINE Alu 99 297 -15 2193 97 0 0 chr4 2900415 2900704 -181387958 + AluSc SINE Alu 9 297 -12 850 140 0 14 chr4 2900793 2900936 -181387726 - AluSc SINE Alu -5 304 164 1201 98 6 0 chr4 2900941 2901105 -181387557 - AluSp SINE Alu -91 222 58 2194 97 3 42 chr4 3001203 3001345 -181287317 + AluSg SINE Alu 1 147 -163 2507 74 0 0 chr4 3001345 3001643 -181287019 + AluY SINE Alu 1 298 -13 2194 97 3 42 chr4 3001643 3001811 -181286851 + AluSg SINE Alu 147 299 -11 2016 132 35 0 chr4 3001939 3002227 -181286435 + AluSg SINE Alu 2 299 -11 2041 142 10 0 chr4 3003363 3003666 -181284996 + AluJb SINE Alu 1 306 -6 1367 163 106 12 chr4 3004253 3004498 -181284164 + AluJb SINE Alu 1 268 -44 764 177 0 0 chr4 3004544 3004668 -181283994 + FLAM_C SINE Alu 1 124 -9 37 23 0 0 chr4 3004668 3004712 -181283950 + AT_rich Low_complexity Low_complexity 1 44 0 1662 108 123 0 chr4 3004942 3005210 -181283452 + AluSx SINE Alu 1 301 -1 2419 62 3 7 chr4 3005916 3006206 -181282456 + AluSc SINE Alu 1 289 -20 1532 215 19 25 chr4 3006464 3006831 -181281831 + MLT1A1 LTR MaLR 1 365 0 2182 130 0 7 chr4 3007108 3007416 -181281246 - AluJb SINE Alu 0 312 7 318 313 120 37 chr4 3007603 3007903 -181280759 + L2 LINE L2 2478 2802 -512 545 245 38 43 chr4 3008055 3008239 -181280423 + LTR41 LTR ERVL 1 183 -590 1991 103 51 7 chr4 3008536 3008828 -181279834 - AluSq SINE Alu -8 305 1 306 320 53 34 chr4 3008897 3009103 -181279559 + L2 LINE L2 3084 3293 -20 423 269 113 76 chr4 3009268 3009404 -181279258 + L1MEc LINE L1 744 874 -5522 1906 156 3 19 chr4 3009404 3009719 -181278943 + AluSx SINE Alu 1 310 -2 1415 123 19 182 chr4 3009728 3010101 -181278561 + AluYb8 SINE Alu 3 314 -4 423 269 113 76 chr4 3010101 3010365 -181278297 + L1MEc LINE L1 881 1134 -5262 2080 109 0 4 chr4 3010365 3010499 -181278163 + AluSx SINE Alu 3 136 -176 2343 99 3 3 chr4 3010499 3010803 -181277859 + AluSp SINE Alu 1 304 -9 2080 109 0 4 chr4 3010803 3010942 -181277720 + AluSx SINE Alu 136 275 -37 225 0 0 0 chr4 3010947 3010972 -181277690 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 423 269 113 76 chr4 3010972 3011287 -181277375 + L1MEc LINE L1 1137 1503 -4893 1029 266 146 8 chr4 3011328 3011829 -181276833 + L1MEc LINE L1 1575 2144 -4252 1968 142 13 13 chr4 3011831 3012141 -181276521 + AluSg SINE Alu 1 310 0 1477 189 71 27 chr4 3012146 3012443 -181276219 + AluJb SINE Alu 1 310 -2 963 178 56 10 chr4 3012443 3012640 -181276022 + Tigger3b DNA MER2_type 341 546 -685 2516 62 3 0 chr4 3012663 3012976 -181275686 + AluY SINE Alu 1 314 0 716 165 0 0 chr4 3012976 3013091 -181275571 - AluJo/FLAM SINE Alu -196 116 2 2274 101 20 0 chr4 3013096 3013392 -181275270 - AluSp SINE Alu -11 302 1 1254 122 57 57 chr4 3013392 3013605 -181275057 + Tigger3b DNA MER2_type 968 1183 -1846 2224 114 7 0 chr4 3013605 3013912 -181274750 - AluSg SINE Alu -1 309 1 1254 122 57 57 chr4 3013912 3013943 -181274719 + Tigger3b DNA MER2_type 1182 1212 -20 233 218 91 0 chr4 3014058 3014113 -181274549 + Tigger3b DNA MER2_type 489 548 -684 2131 136 0 10 chr4 3014142 3014451 -181274211 + AluSg SINE Alu 1 306 -4 320 260 81 16 chr4 3014461 3014584 -181274078 + L1M4 LINE L1 3826 3956 -2190 1181 132 64 15 chr4 3014585 3014789 -181273873 + AluSc SINE Alu 94 307 -2 2199 86 14 7 chr4 3014815 3015105 -181273557 + AluSx SINE Alu 13 304 -8 555 188 45 15 chr4 3015242 3015375 -181273287 + FLAM_C SINE Alu 7 143 0 2251 98 7 0 chr4 3015393 3015689 -181272973 + AluSx SINE Alu 1 298 -14 2223 111 10 0 chr4 3023247 3023545 -181265117 + AluSq SINE Alu 1 301 -12 2191 109 23 0 chr4 3023548 3023851 -181264811 + AluSq SINE Alu 4 313 0 2325 103 3 6 chr4 3023851 3024207 -181264455 + AluSp SINE Alu 1 355 0 1700 172 36 3 chr4 3024614 3024916 -181263746 + AluJb SINE Alu 1 312 0 269 109 22 0 chr4 3025524 3025570 -181263092 + CT-rich Low_complexity Low_complexity 2 48 0 1906 170 0 16 chr4 3025885 3026202 -181262460 + AluJb SINE Alu 1 312 0 1898 161 23 0 chr4 3026273 3026572 -181262090 + AluSx SINE Alu 1 306 -6 1320 127 150 9 chr4 3026801 3027021 -181261641 + AluSg1 SINE Alu 55 305 -4 2356 70 31 0 chr4 3027120 3027407 -181261255 + AluY SINE Alu 1 296 -15 2274 108 6 16 chr4 3027702 3028017 -181260645 + AluSx SINE Alu 1 312 0 1145 100 7 0 chr4 3028017 3028210 -181260452 + AluY SINE Alu 132 325 0 515 214 201 13 chr4 3028220 3028526 -181260136 + L1MC/D LINE L1 5327 5673 -587 629 162 8 8 chr4 3028663 3028780 -181259882 - FLAM_A SINE Alu -8 134 18 205 307 110 24 chr4 3029166 3029293 -181259369 - MIR3 SINE MIR -41 167 30 1546 163 3 83 chr4 3029562 3029862 -181258800 + AluJo SINE Alu 7 282 -30 1325 105 6 0 chr4 3029862 3030034 -181258628 - AluSg/x SINE Alu -6 304 132 2087 98 59 0 chr4 3030034 3030320 -181258342 - AluSg SINE Alu -7 303 1 265 297 148 33 chr4 3031457 3031639 -181257023 - MIR SINE MIR -7 255 53 2345 86 7 10 chr4 3032533 3032836 -181255826 - AluSg1 SINE Alu -7 302 1 21 0 0 0 chr4 3033104 3033125 -181255537 + AT_rich Low_complexity Low_complexity 1 21 0 2050 111 57 7 chr4 3033135 3033433 -181255229 + AluSp SINE Alu 1 313 0 2294 92 3 0 chr4 3033504 3033796 -181254866 - AluSx SINE Alu -19 293 1 853 187 177 5 chr4 3033805 3034003 -181254659 - AluSg/x SINE Alu -13 296 65 23 0 0 0 chr4 3034083 3034106 -181254556 + AT_rich Low_complexity Low_complexity 1 23 0 2107 119 10 10 chr4 3034224 3034526 -181254136 + AluSx SINE Alu 1 302 -10 2252 103 17 0 chr4 3034773 3035073 -181253589 + AluY SINE Alu 1 305 -6 2133 129 0 0 chr4 3035942 3036229 -181252433 + AluSg SINE Alu 1 287 -23 2093 90 13 33 chr4 3036767 3037067 -181251595 + AluSq SINE Alu 1 294 -19 219 281 18 0 chr4 3037203 3037260 -181251402 + MIR SINE MIR 154 211 -51 4262 77 2 13 chr4 3037669 3038010 -181250652 + LTR10C LTR ERV1 1 334 -257 2286 82 10 13 chr4 3038010 3038313 -181250349 + AluY SINE Alu 1 302 -9 4262 77 2 13 chr4 3038313 3038569 -181250093 + LTR10C LTR ERV1 334 591 0 1761 119 4 4 chr4 3038600 3038852 -181249810 + AluSg SINE Alu 56 307 -3 1841 104 8 8 chr4 3038919 3039169 -181249493 - AluSg SINE Alu -6 304 55 260 260 27 47 chr4 3039373 3039523 -181249139 + L2 LINE L2 2914 3060 -212 1414 193 4 40 chr4 3040375 3040467 -181248195 + AluJo SINE Alu 35 129 -183 2494 63 7 0 chr4 3040467 3040766 -181247896 - AluY SINE Alu -10 301 1 1414 193 4 40 chr4 3040766 3040948 -181247714 + AluJo SINE Alu 129 299 -13 2003 117 57 0 chr4 3040949 3041232 -181247430 + AluSq SINE Alu 1 299 -14 1364 155 5 0 chr4 3041233 3041446 -181247216 + AluSg/x SINE Alu 85 298 -12 1341 171 93 8 chr4 3041605 3041862 -181246800 - AluJo SINE Alu -33 279 1 262 203 98 26 chr4 3043093 3043229 -181245433 - MER5A DNA MER1_type -1 188 1 2177 102 30 10 chr4 3043570 3043873 -181244789 + AluSq SINE Alu 1 309 -4 493 248 81 6 chr4 3043908 3044069 -181244593 + MIR SINE MIR 84 256 -6 2088 97 39 4 chr4 3044200 3044502 -181244160 - AluSx SINE Alu 0 312 1 1523 189 0 23 chr4 3044960 3045099 -181243563 + AluJb SINE Alu 1 133 -179 2262 116 6 6 chr4 3045099 3045410 -181243252 + AluSx SINE Alu 1 311 -1 1523 189 0 23 chr4 3045410 3045535 -181243127 + AluJb SINE Alu 133 259 -53 526 275 54 45 chr4 3046450 3046672 -181241990 - MIR SINE MIR -32 230 7 183 278 134 0 chr4 3046736 3046833 -181241829 + L2 LINE L2 2330 2439 -875 187 256 289 0 chr4 3046854 3046944 -181241718 + L2 LINE L2 3198 3313 0 188 355 81 17 chr4 3047726 3047898 -181240764 - L2 LINE L2 -563 2751 2569 296 162 88 0 chr4 3048121 3048189 -181240473 - Tigger5 DNA MER2_type 0 2323 2250 429 103 0 0 chr4 3048555 3048613 -181240049 + AluJ/FLAM SINE Alu 2 59 -253 976 103 109 0 chr4 3048950 3049124 -181239538 - Tigger3(Golem) DNA MER2_type -73 2956 2764 2002 111 26 7 chr4 3049124 3049431 -181239231 + AluSq SINE Alu 1 313 0 2035 128 0 0 chr4 3049438 3049726 -181238936 - AluSx SINE Alu -21 291 4 213 211 57 0 chr4 3049866 3049930 -181238732 + MIR SINE MIR 70 139 -69 360 335 54 6 chr4 3050015 3050182 -181238480 - L2 LINE L2 0 3313 3139 1362 139 0 9 chr4 3051325 3051541 -181237121 + AluJb SINE Alu 85 298 -14 2092 121 0 0 chr4 3052693 3052982 -181235680 + AluSx SINE Alu 15 303 -9 1607 123 11 58 chr4 3053009 3053285 -181235377 + AluJb SINE Alu 1 263 -49 2317 92 66 20 chr4 3053514 3053862 -181234800 - THE1B LTR MaLR 0 364 1 12073 89 8 6 chr4 3053862 3055440 -181233222 - THE1B-int LTR MaLR 0 1580 1 2093 112 55 60 chr4 3055440 3055653 -181233009 - THE1B LTR MaLR 0 364 152 1983 139 3 0 chr4 3055653 3055947 -181232715 - AluSg SINE Alu -15 295 1 2093 112 55 60 chr4 3055947 3056099 -181232563 - THE1B LTR MaLR -212 152 1 327 256 34 0 chr4 3056099 3056169 -181232493 + FAM SINE Alu 18 60 -242 1640 128 0 0 chr4 3056169 3056404 -181232258 + AluSx SINE Alu 1 235 -77 327 256 34 0 chr4 3056404 3056434 -181232228 + FAM SINE Alu 60 88 -78 537 176 0 42 chr4 3056434 3056553 -181232109 + FAM SINE Alu 72 185 0 2151 99 10 3 chr4 3056560 3056863 -181231799 + AluSg SINE Alu 1 305 -5 425 245 86 15 chr4 3057332 3057486 -181231176 + MIR SINE MIR 16 179 -83 1030 172 17 67 chr4 3057540 3057613 -181231049 + AluJo SINE Alu 74 149 -163 2195 78 0 0 chr4 3057613 3057919 -181230743 + AluY SINE Alu 1 306 0 1030 172 17 67 chr4 3057919 3058082 -181230580 + AluJo SINE Alu 149 299 -13 10326 117 56 117 chr4 3058082 3058204 -181230458 - Tigger1 DNA MER2_type -210 2208 2080 2244 92 0 7 chr4 3058204 3058508 -181230154 - AluSp SINE Alu -11 302 1 10326 117 56 117 chr4 3058508 3058850 -181229812 - Tigger1 DNA MER2_type -338 2080 1719 2107 94 0 29 chr4 3058850 3059157 -181229505 - AluSc SINE Alu -11 298 1 1534 145 0 34 chr4 3059158 3059420 -181229242 - AluSx SINE Alu -18 294 42 1929 117 3 7 chr4 3059429 3059720 -181228942 - AluSg1 SINE Alu -19 290 1 10326 117 56 117 chr4 3059720 3059858 -181228804 - Tigger1 DNA MER2_type -707 1711 1566 1980 115 7 7 chr4 3059858 3060144 -181228518 - AluSx SINE Alu -19 293 8 10326 117 56 117 chr4 3060144 3060190 -181228472 - Tigger1 DNA MER2_type -852 1566 1519 2273 80 3 0 chr4 3060190 3060489 -181228173 - AluY SINE Alu -9 302 3 10326 117 56 117 chr4 3060489 3060631 -181228031 - Tigger1 DNA MER2_type -899 1519 1370 793 128 0 94 chr4 3060631 3060780 -181227882 - FLAM_C SINE Alu -7 136 2 10326 117 56 117 chr4 3060780 3061984 -181226678 - Tigger1 DNA MER2_type -1048 1370 198 2159 115 0 3 chr4 3061984 3062288 -181226374 + AluSx SINE Alu 1 303 -9 10326 117 56 117 chr4 3062288 3062452 -181226210 - Tigger1 DNA MER2_type -2220 198 26 185 182 164 0 chr4 3062501 3062556 -181226106 + L2 LINE L2 3232 3295 -18 386 267 80 13 chr4 3062587 3062737 -181225925 + MER106B DNA MER1_type 896 1055 -4 363 235 0 24 chr4 3062979 3063064 -181225598 + MIR SINE MIR 50 132 -76 23 0 0 0 chr4 3064338 3064361 -181224301 + GC_rich Low_complexity Low_complexity 1 23 0 1799 80 0 16 chr4 3065097 3065346 -181223316 - AluSq SINE Alu -68 245 1 2295 35 0 28 chr4 3065545 3065863 -181222799 - AluY SINE Alu 0 310 1 1667 168 0 35 chr4 3065863 3066177 -181222485 - AluJb SINE Alu -7 305 1 1473 171 27 40 chr4 3066471 3066769 -181221893 + AluJb SINE Alu 1 294 -18 1294 147 9 0 chr4 3066914 3067125 -181221537 + AluJo SINE Alu 86 298 -14 196 162 54 0 chr4 3067270 3067307 -181221355 + MER5A DNA MER1_type 64 102 -87 1364 187 128 8 chr4 3067729 3068171 -181220491 - MLT1H LTR MaLR -8 541 1 263 224 40 13 chr4 3068565 3068641 -181220021 + MLT1K LTR MaLR 448 525 -63 2052 97 20 17 chr4 3068748 3069047 -181219615 - AluSq SINE Alu -13 300 1 186 390 11 0 chr4 3069674 3069769 -181218893 + MIR SINE MIR 89 184 -78 315 196 9 103 chr4 3070011 3070118 -181218544 - MER53 DNA DNA 0 189 93 22 35 0 0 chr4 3070201 3070230 -181218432 + GC_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 3070766 3070787 -181217875 + GC_rich Low_complexity Low_complexity 1 21 0 1110 153 16 0 chr4 3071065 3071255 -181217407 - AluJb SINE Alu 0 312 120 2055 82 43 4 chr4 3072228 3072508 -181216154 + AluSc SINE Alu 14 304 -5 385 328 85 17 chr4 3072518 3072753 -181215909 + L1MC4 LINE L1 7699 7949 -93 310 211 0 0 chr4 3074778 3074830 -181213832 + MLT1C LTR MaLR 416 467 0 325 278 11 30 chr4 3074839 3074986 -181213676 + L1MC3 LINE L1 6207 7783 0 228 285 46 54 chr4 3075239 3075369 -181213293 + MIR SINE MIR 18 146 -62 1833 144 34 0 chr4 3076009 3076301 -181212361 + AluJo SINE Alu 1 302 -10 2264 85 3 0 chr4 3076433 3076728 -181211934 + AluSp SINE Alu 1 296 -17 626 198 0 9 chr4 3076732 3076838 -181211824 - FLAM_C SINE Alu -18 125 21 814 178 16 0 chr4 3076925 3077054 -181211608 + AluSq/x SINE Alu 2 132 -181 318 371 59 8 chr4 3077102 3077358 -181211304 + L1MC4 LINE L1 6768 7036 -1006 1795 139 42 0 chr4 3077555 3077721 -181210941 - AluSx SINE Alu -13 299 115 210 37 0 0 chr4 3077721 3077748 -181210914 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1795 139 42 0 chr4 3077748 3077868 -181210794 - AluSx SINE Alu -197 115 1 381 291 52 56 chr4 3077889 3078059 -181210603 + L1M4 LINE L1 5111 5280 -866 1505 175 73 0 chr4 3078059 3078333 -181210329 + AluJb SINE Alu 1 294 -18 2120 136 0 0 chr4 3078337 3078647 -181210015 + AluSx SINE Alu 1 310 -2 381 291 52 56 chr4 3078647 3078684 -181209978 + L1M4 LINE L1 5283 5322 -824 902 120 46 51 chr4 3078699 3078822 -181209840 + L1MA8 LINE L1 6116 6239 -52 2038 114 0 33 chr4 3078822 3078958 -181209704 + AluSx SINE Alu 1 140 -172 2055 127 0 16 chr4 3078958 3079272 -181209390 + AluSg1 SINE Alu 1 309 0 2038 114 0 33 chr4 3079272 3079442 -181209220 + AluSx SINE Alu 140 297 -15 902 120 46 51 chr4 3079442 3079493 -181209169 + L1MA8 LINE L1 6239 6289 -2 743 296 35 29 chr4 3079495 3079830 -181208832 + L1MC4a LINE L1 5256 5599 -844 260 305 149 15 chr4 3079976 3080176 -181208486 + L1MC4a LINE L1 5910 6156 -1652 2026 138 7 0 chr4 3080176 3080480 -181208182 - AluJb SINE Alu -6 306 1 260 305 149 15 chr4 3080480 3080548 -181208114 + L1MC4a LINE L1 6156 6214 -1594 317 324 20 7 chr4 3081280 3081428 -181207234 + (TCCA)n Simple_repeat Simple_repeat 3 152 0 205 188 0 42 chr4 3083399 3083447 -181205215 + C-rich Low_complexity Low_complexity 6 51 0 286 273 161 14 chr4 3084116 3084402 -181204260 + L2 LINE L2 2248 2575 -739 400 293 89 18 chr4 3084495 3084720 -181203942 + L2 LINE L2 2844 3084 -229 972 185 7 3 chr4 3085101 3085547 -181203115 + (TCCA)n Simple_repeat Simple_repeat 1 627 0 790 206 6 1 chr4 3085580 3086281 -181202381 + (TCCA)n Simple_repeat Simple_repeat 1 704 0 635 215 6 0 chr4 3086306 3086478 -181202184 + (TCCA)n Simple_repeat Simple_repeat 2 174 0 332 334 112 25 chr4 3086478 3086560 -181202102 - L2 LINE L2 0 3313 3239 2045 127 10 0 chr4 3086560 3086893 -181201769 + AluSx SINE Alu 1 312 0 332 334 112 25 chr4 3086893 3087124 -181201538 - L2 LINE L2 -74 3239 2973 275 279 38 13 chr4 3087231 3087310 -181201352 + MLT1K LTR MaLR 166 246 -342 285 268 89 18 chr4 3087387 3087499 -181201163 + MLT1K LTR MaLR 467 586 -2 1623 184 10 16 chr4 3091347 3091657 -181197005 - AluJb SINE Alu -2 310 3 1808 170 89 6 chr4 3091657 3092004 -181196658 + MSTB1 LTR MaLR 57 432 0 510 319 42 78 chr4 3092028 3092117 -181196545 + L1M4 LINE L1 4651 4742 -1404 1727 170 3 3 chr4 3092117 3092411 -181196251 + AluJo SINE Alu 1 294 -18 510 319 42 78 chr4 3092411 3092707 -181195955 + L1M4 LINE L1 4742 5022 -1124 1046 204 25 4 chr4 3093177 3093412 -181195250 + AluSx SINE Alu 61 300 -12 1378 130 51 16 chr4 3093412 3093665 -181194997 + L1MA5 LINE L1 6037 6298 -2 2209 78 0 7 chr4 3093724 3094017 -181194645 + AluSc SINE Alu 1 291 -18 664 165 51 173 chr4 3094017 3094271 -181194391 - L1ME LINE L1 -347 5819 5597 2000 109 3 7 chr4 3094273 3094557 -181194105 - AluSg SINE Alu -14 296 14 2259 76 3 3 chr4 3094557 3094858 -181193804 - AluY SINE Alu -10 301 1 1749 155 7 17 chr4 3094862 3095159 -181193503 - AluJb SINE Alu -7 305 12 603 199 99 53 chr4 3095172 3095454 -181193208 - L1ME LINE L1 -1446 4700 4406 400 305 104 11 chr4 3095711 3095990 -181192672 - L2 LINE L2 -466 2848 2544 2050 96 4 4 chr4 3096287 3096568 -181192094 + AluSx SINE Alu 1 281 -31 195 42 0 0 chr4 3096572 3096596 -181192066 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 301 250 21 31 chr4 3096596 3096678 -181191984 + L1M4 LINE L1 3793 3875 -2271 1517 187 3 23 chr4 3096678 3096977 -181191685 + AluSx SINE Alu 1 293 -19 301 250 21 31 chr4 3096977 3096990 -181191672 + L1M4 LINE L1 3875 3887 -2259 2009 84 7 7 chr4 3097696 3097971 -181190691 - AluSx SINE Alu -12 300 26 281 26 26 0 chr4 3097989 3098027 -181190635 + (TTA)n Simple_repeat Simple_repeat 2 40 0 1670 143 0 38 chr4 3098034 3098192 -181190470 - AluJo SINE Alu -36 276 132 2316 68 0 7 chr4 3098192 3098488 -181190174 + AluY SINE Alu 1 294 -17 818 152 0 0 chr4 3098491 3098616 -181190046 - AluJo/FLAM SINE Alu -187 125 1 2857 10 3 3 chr4 3098640 3098951 -181189711 + AluYa5 SINE Alu 1 311 0 775 69 20 0 chr4 3098960 3099062 -181189600 + AluSq/x SINE Alu 1 104 -208 208 106 21 43 chr4 3099223 3099270 -181189392 + (CCCG)n Simple_repeat Simple_repeat 2 47 0 2004 102 22 0 chr4 3100500 3100775 -181187887 + AluSp SINE Alu 13 293 -20 2283 79 3 22 chr4 3100777 3101092 -181187570 + AluY SINE Alu 1 309 -2 1914 99 106 4 chr4 3101108 3101381 -181187281 + AluSx SINE Alu 1 301 -11 609 174 31 68 chr4 3101381 3101542 -181187120 + L1MA5 LINE L1 5756 5910 -390 2065 116 10 13 chr4 3101549 3101860 -181186802 - AluSg SINE Alu 0 310 1 1490 113 32 0 chr4 3101998 3102219 -181186443 - AluSq SINE Alu -85 228 1 1699 91 0 13 chr4 3102221 3102400 -181186262 - AluY SINE Alu -1 310 133 2445 38 3 14 chr4 3102400 3102710 -181185952 - AluY SINE Alu 0 311 1 1699 91 0 13 chr4 3102710 3102761 -181185901 - AluY SINE Alu -178 133 83 2144 101 3 63 chr4 3102763 3103081 -181185581 - AluSq SINE Alu -14 299 1 1407 187 56 21 chr4 3103191 3103475 -181185187 + AluJo SINE Alu 1 294 -18 440 306 0 9 chr4 3103533 3103644 -181185018 + FLAM_A SINE Alu 5 114 -19 2078 129 3 13 chr4 3103705 3104014 -181184648 + AluSg SINE Alu 1 306 -4 2386 60 30 13 chr4 3104404 3104705 -181183957 + AluSx SINE Alu 1 306 -6 807 157 0 0 chr4 3105520 3105641 -181183021 + AluSg/x SINE Alu 172 292 -18 1710 156 10 27 chr4 3107382 3107677 -181180985 + AluJo SINE Alu 1 290 -22 2038 129 36 3 chr4 3107920 3108222 -181180440 + AluSx SINE Alu 1 312 0 937 186 12 0 chr4 3108652 3108813 -181179849 - FRAM SINE Alu -13 163 1 1295 209 104 71 chr4 3109521 3109939 -181178723 - Charlie7 DNA MER1_type -111 2501 2052 2562 51 0 29 chr4 3109939 3110254 -181178408 + AluY SINE Alu 1 306 -5 1295 209 104 71 chr4 3110254 3110487 -181178175 - Charlie7 DNA MER1_type -560 2052 1828 2155 95 14 3 chr4 3110487 3110770 -181177892 - AluSx SINE Alu -18 294 9 331 176 71 188 chr4 3110877 3110979 -181177683 + L1ME3A LINE L1 5053 5165 -981 2134 122 3 3 chr4 3110979 3111274 -181177388 - AluSp SINE Alu -18 295 1 331 176 71 188 chr4 3111274 3111294 -181177368 + L1ME3A LINE L1 5165 5153 -993 2026 134 0 10 chr4 3111294 3111592 -181177070 - AluSx SINE Alu -17 295 1 331 176 71 188 chr4 3111592 3111638 -181177024 + L1ME3A LINE L1 5152 5202 -944 1151 274 114 34 chr4 3111666 3112283 -181176379 + L1ME3A LINE L1 5290 5985 -185 2417 94 3 0 chr4 3112283 3112590 -181176072 - AluSc SINE Alu -1 308 1 1151 274 114 34 chr4 3112590 3112763 -181175899 + L1ME3A LINE L1 5985 6143 -27 1311 99 6 0 chr4 3112793 3112965 -181175697 - AluSg/x SINE Alu -14 298 126 931 234 80 7 chr4 3113005 3113291 -181175371 + L1M4 LINE L1 4872 5178 -968 314 328 133 9 chr4 3113313 3113636 -181175026 + L1MCc LINE L1 -485 4294967173 -6031 253 291 53 82 chr4 3113882 3113961 -181174701 + L1MCc LINE L1 295 375 -5533 2081 116 19 35 chr4 3113961 3114271 -181174391 + AluSq SINE Alu 1 305 -8 253 291 53 82 chr4 3114271 3114397 -181174265 + L1MCc LINE L1 375 494 -5414 352 223 142 7 chr4 3114543 3114691 -181173971 + L1MCc LINE L1 1306 1465 -4961 194 159 45 0 chr4 3114745 3114789 -181173873 + GA-rich Low_complexity Low_complexity 3 48 0 1496 158 85 12 chr4 3114813 3115072 -181173590 + AluJo SINE Alu 14 291 -21 533 291 46 37 chr4 3115087 3115282 -181173380 + L1MCc LINE L1 1654 1846 -4761 2099 110 9 31 chr4 3115282 3115600 -181173062 + AluY SINE Alu 1 311 0 533 291 46 37 chr4 3115600 3115680 -181172982 + L1MCc LINE L1 1846 1924 -4683 2114 123 13 7 chr4 3115680 3115989 -181172673 + AluSx SINE Alu 1 311 -1 533 291 46 37 chr4 3115989 3116062 -181172600 + L1MCc LINE L1 1924 2006 -4601 2431 54 3 3 chr4 3116080 3116374 -181172288 - AluY SINE Alu -4 307 14 1708 171 17 38 chr4 3116398 3116742 -181171920 - MSTB LTR MaLR -49 377 41 4491 101 14 75 chr4 3116742 3117501 -181171161 - L1PA12 LINE L1 -9 6159 5447 1896 181 0 3 chr4 3117515 3117818 -181170844 - AluJb SINE Alu -10 302 1 1356 69 0 29 chr4 3117847 3118022 -181170640 - AluSx SINE Alu -142 170 1 733 149 0 41 chr4 3118073 3118194 -181170468 + FLAM_C SINE Alu 2 117 -26 452 108 0 0 chr4 3118198 3118263 -181170399 + AluJ/FRAM SINE Alu 230 294 -8 * 2044 123 131 44 chr4 3118258 3118664 -181169998 + Tigger2 DNA MER2_type 2278 2718 0 487 283 26 58 chr4 3118694 3118885 -181169777 + MIR SINE MIR 75 259 -3 815 174 84 7 chr4 3119007 3119162 -181169500 + AluJb SINE Alu 140 306 -6 319 297 14 0 chr4 3119226 3119300 -181169362 + L2 LINE L2 3198 3272 0 2227 133 0 0 chr4 3119516 3119824 -181168838 + AluSx SINE Alu 1 308 -4 297 95 0 0 chr4 3120037 3120079 -181168583 + Alu SINE Alu 253 294 -6 372 311 45 8 chr4 3120379 3120511 -181168151 + MIR SINE MIR 92 228 -34 346 230 0 58 chr4 3120569 3120656 -181168006 + AluSg/x SINE Alu 136 217 -83 824 204 14 0 chr4 3120670 3120817 -181167845 - FAM SINE Alu -36 149 1 2080 106 0 11 chr4 3120840 3121146 -181167516 + AluSg SINE Alu 3 305 0 2383 90 3 0 chr4 3121471 3121770 -181166892 + AluSx SINE Alu 2 301 -11 26 64 0 0 chr4 3122428 3122475 -181166187 + AT_rich Low_complexity Low_complexity 1 47 0 294 315 207 9 chr4 3122605 3122818 -181165844 + L2 LINE L2 2109 2363 -951 599 275 174 12 chr4 3123069 3123446 -181165216 + L2 LINE L2 2628 3060 -253 1571 97 14 0 chr4 3123984 3124191 -181164471 - AluSc SINE Alu -91 218 9 2100 93 0 83 chr4 3124289 3124473 -181164189 - AluSx SINE Alu -15 297 150 2073 125 31 0 chr4 3124473 3124760 -181163902 - AluSg SINE Alu -14 296 1 2100 93 0 83 chr4 3124760 3124899 -181163763 - AluSx SINE Alu -162 150 1 2080 126 3 7 chr4 3125539 3125840 -181162822 - AluSc SINE Alu -9 300 1 782 148 0 87 chr4 3125872 3126021 -181162641 + AluJb SINE Alu 4 139 -173 2123 122 3 40 chr4 3126029 3126350 -181162312 + AluSq SINE Alu 1 309 -4 1378 219 7 49 chr4 3126737 3126875 -181161787 + AluJo SINE Alu 6 148 -164 2268 94 0 10 chr4 3126875 3127174 -181161488 + AluSg SINE Alu 1 296 -14 1378 219 7 49 chr4 3127174 3127341 -181161321 + AluJo SINE Alu 148 298 -14 2421 79 7 0 chr4 3127442 3127745 -181160917 - AluSx SINE Alu -7 305 1 677 246 102 29 chr4 3127773 3128086 -181160576 - L1ME3A LINE L1 -273 5897 5562 1449 189 10 69 chr4 3128146 3128320 -181160342 - AluJo SINE Alu -24 288 138 2351 92 0 0 chr4 3128320 3128612 -181160050 + AluSg SINE Alu 1 292 -18 1449 189 10 69 chr4 3128612 3128743 -181159919 - AluJo SINE Alu -174 138 1 2088 201 89 99 chr4 3128754 3129409 -181159253 - L1ME1 LINE L1 -44 6122 5462 949 211 131 65 chr4 3129409 3129558 -181159104 - AluJo SINE Alu -9 293 155 1957 120 10 24 chr4 3129558 3129876 -181158786 + AluSq SINE Alu 1 314 0 949 211 131 65 chr4 3129876 3130000 -181158662 - AluJo SINE Alu -147 155 1 2088 201 89 99 chr4 3130000 3130036 -181158626 - L1ME1 LINE L1 -704 5462 5427 321 68 0 0 chr4 3130036 3130080 -181158582 + (TG)n Simple_repeat Simple_repeat 2 45 0 2040 125 4 0 chr4 3130081 3130361 -181158301 - AluSx SINE Alu -17 295 15 2088 201 89 99 chr4 3130361 3130520 -181158142 - L1ME1 LINE L1 -739 5427 5268 2331 90 7 0 chr4 3130520 3130819 -181157843 - AluSq SINE Alu -12 301 1 2088 201 89 99 chr4 3130819 3130910 -181157752 - L1ME1 LINE L1 -898 5268 5178 1998 157 3 0 chr4 3130910 3131204 -181157458 - AluSx SINE Alu -17 295 1 2088 201 89 99 chr4 3131204 3131370 -181157292 - L1ME1 LINE L1 -988 5178 5024 2092 125 6 13 chr4 3131372 3131683 -181156979 - AluSx SINE Alu -1 311 3 429 214 12 89 chr4 3131694 3131832 -181156830 - L1ME3A LINE L1 -965 5181 5057 2856 16 3 0 chr4 3131832 3132142 -181156520 - AluYa5 SINE Alu 0 311 1 429 214 12 89 chr4 3132142 3132171 -181156491 - L1ME3A LINE L1 -1089 5057 5027 2172 133 0 3 chr4 3132171 3132473 -181156189 - AluSg SINE Alu -9 301 1 1851 169 0 28 chr4 3132473 3132792 -181155870 - AluSx SINE Alu -1 311 1 466 266 38 49 chr4 3132796 3132874 -181155788 - L1ME3A LINE L1 -2274 3872 3795 2258 89 4 0 chr4 3132874 3133179 -181155483 - AluSp SINE Alu 0 309 4 2266 85 3 10 chr4 3133183 3133533 -181155129 - AluY SINE Alu 0 311 14 466 266 38 49 chr4 3133533 3133663 -181154999 - L1ME3A LINE L1 -2354 3792 3659 1281 181 17 0 chr4 3133663 3133895 -181154767 - MER46A DNA MER2_type 0 236 1 466 266 38 49 chr4 3133895 3133946 -181154716 - L1ME3A LINE L1 -2487 3659 3609 2195 227 109 66 chr4 3133961 3134275 -181154387 - L1ME3A LINE L1 -2734 3412 3113 1760 172 0 35 chr4 3134275 3134455 -181154207 - AluJo SINE Alu -2 310 144 2592 56 0 0 chr4 3134455 3134757 -181153905 - AluY SINE Alu -9 302 1 1760 172 0 35 chr4 3134757 3134895 -181153767 - AluJo SINE Alu -168 144 3 2195 227 109 66 chr4 3134895 3134980 -181153682 - L1ME3A LINE L1 -3033 3113 3033 2313 68 4 0 chr4 3134980 3135283 -181153379 - AluY SINE Alu 0 304 1 1961 151 10 3 chr4 3135290 3135594 -181153068 - AluSx SINE Alu -6 306 1 2195 227 109 66 chr4 3135594 3135630 -181153032 - L1ME3A LINE L1 -3118 3028 2995 844 208 6 24 chr4 3135630 3135798 -181152864 + FAM SINE Alu 1 165 -10 2195 227 109 66 chr4 3135798 3135820 -181152842 - L1ME3A LINE L1 -3151 2995 2975 2283 83 3 0 chr4 3135820 3136108 -181152554 - AluSc SINE Alu -4 305 17 2195 227 109 66 chr4 3136108 3136140 -181152522 - L1ME3A LINE L1 -3171 2975 2946 2029 138 51 28 chr4 3136140 3136496 -181152166 + THE1B LTR MaLR 1 364 0 2195 227 109 66 chr4 3136496 3136528 -181152134 - L1ME3A LINE L1 -3200 2946 2917 2208 113 0 3 chr4 3136528 3136829 -181151833 - AluSg SINE Alu -10 300 1 2195 227 109 66 chr4 3136829 3137431 -181151231 - L1ME3A LINE L1 -3229 2917 2226 275 173 0 19 chr4 3137778 3137830 -181150832 + Alu SINE Alu 2 52 -247 1546 172 3 107 chr4 3137943 3138054 -181150608 + AluJb SINE Alu 2 123 -179 2268 83 10 0 chr4 3138054 3138344 -181150318 - AluY SINE Alu -3 308 16 2037 115 31 0 chr4 3138352 3138639 -181150023 - AluSq SINE Alu -17 296 1 1546 172 3 107 chr4 3138639 3138654 -181150008 + AluJb SINE Alu 130 145 -157 2251 89 10 3 chr4 3138654 3138947 -181149715 - AluSc SINE Alu -14 295 1 1546 172 3 107 chr4 3138947 3139136 -181149526 + AluJb SINE Alu 145 293 -9 390 92 0 0 chr4 3139357 3139422 -181149240 - L1MC3 LINE L1 0 7785 7721 1755 149 24 24 chr4 3139422 3139751 -181148911 - MER44D DNA MER2_type 0 609 11 790 181 99 45 chr4 3139776 3139997 -181148665 - L1MD3 LINE L1 -67 7928 7696 2335 92 0 7 chr4 3140114 3140408 -181148254 + AluSc SINE Alu 1 292 -17 2091 136 13 7 chr4 3140434 3140744 -181147918 + AluSx SINE Alu 1 312 0 1189 210 5 0 chr4 3140859 3141083 -181147579 - AluJo SINE Alu -46 266 42 2042 149 7 0 chr4 3141161 3141462 -181147200 + AluSx SINE Alu 1 303 -9 289 234 9 56 chr4 3141646 3141753 -181146909 - MIR3 SINE MIR -1 207 106 894 213 0 18 chr4 3141867 3142036 -181146626 - AluJ SINE Alu 0 302 137 2201 92 58 3 chr4 3142388 3142683 -181145979 - AluSq SINE Alu -2 311 1 825 140 0 37 chr4 3143257 3143393 -181145269 - AluJ SINE Alu -181 131 1 1977 150 3 7 chr4 3143623 3143923 -181144739 - AluSx SINE Alu -13 299 1 2386 96 0 0 chr4 3143934 3144237 -181144425 - AluSx SINE Alu -9 303 1 278 310 14 0 chr4 3144487 3144558 -181144104 + MIR3 SINE MIR 114 185 -23 1707 160 11 14 chr4 3144606 3144888 -181143774 + AluJo SINE Alu 1 281 -31 2195 99 3 3 chr4 3145065 3145359 -181143303 - AluSg SINE Alu -5 305 12 2443 91 3 0 chr4 3145374 3145681 -181142981 - AluSg SINE Alu -2 308 1 669 163 114 8 chr4 3145862 3145985 -181142677 + FLAM_C SINE Alu 3 138 -5 1100 251 122 15 chr4 3146009 3146420 -181142242 + Charlie7 DNA MER1_type 409 863 -1749 1756 155 33 16 chr4 3146518 3146821 -181141841 - AluJb SINE Alu -4 308 1 1563 203 128 91 chr4 3147060 3147234 -181141428 + Charlie7 DNA MER1_type 926 1092 -1520 1557 161 36 23 chr4 3147234 3147539 -181141123 - AluJo SINE Alu -3 309 1 1563 203 128 91 chr4 3147539 3147693 -181140969 + Charlie7 DNA MER1_type 1092 1239 -1373 2186 123 7 0 chr4 3147693 3147994 -181140668 - AluSc SINE Alu -6 303 1 1563 203 128 91 chr4 3147994 3148486 -181140176 + Charlie7 DNA MER1_type 1239 1777 -835 2428 69 0 26 chr4 3148490 3148793 -181139869 - AluY SINE Alu -16 295 1 2226 84 0 4 chr4 3148793 3149068 -181139594 - AluSg SINE Alu -10 300 27 2367 103 7 3 chr4 3149068 3149377 -181139285 - AluY SINE Alu 0 311 1 1013 222 23 82 chr4 3149377 3149430 -181139232 + L1 LINE L1 3535 3590 -2556 2138 142 0 0 chr4 3149430 3149733 -181138929 + AluSq SINE Alu 1 303 -10 2225 70 13 61 chr4 3149733 3150048 -181138614 + AluY SINE Alu 1 298 -13 1013 222 23 82 chr4 3150048 3150178 -181138484 + L1 LINE L1 3589 3725 -2421 2222 101 0 10 chr4 3150178 3150474 -181138188 + AluSq SINE Alu 1 293 -20 1013 222 23 82 chr4 3150474 3150603 -181138059 + L1 LINE L1 3725 3860 -2286 1816 118 0 99 chr4 3150603 3150935 -181137727 + AluSx SINE Alu 2 300 -12 1013 222 23 82 chr4 3150935 3151161 -181137501 + L1 LINE L1 3860 4242 -1904 2341 103 0 0 chr4 3151161 3151473 -181137189 + AluSx SINE Alu 1 312 0 656 223 47 63 chr4 3151536 3151664 -181136998 + L1 LINE L1 5174 5300 -846 2302 67 0 0 chr4 3151664 3151971 -181136691 + AluY SINE Alu 2 308 0 656 223 47 63 chr4 3151971 3152047 -181136615 + L1 LINE L1 5300 5376 -770 667 231 0 8 chr4 3152048 3152182 -181136480 + AluJb SINE Alu 171 303 -9 754 183 47 26 chr4 3152185 3152367 -181136295 + L1MB4 LINE L1 5959 6136 -47 693 206 15 0 chr4 3152367 3152498 -181136164 + AluJo/FLAM SINE Alu 1 133 -169 1938 106 4 4 chr4 3152498 3152773 -181135889 + AluSp SINE Alu 38 312 -1 1790 119 0 119 chr4 3152773 3153108 -181135554 + AluY SINE Alu 2 296 -5 2336 88 0 0 chr4 3153113 3153409 -181135253 + AluSq SINE Alu 1 296 -17 754 183 47 26 chr4 3153409 3153443 -181135219 + L1MB4 LINE L1 6139 6176 -7 1168 150 235 45 chr4 3153603 3153794 -181134868 - Tigger3b DNA MER2_type -2481 547 394 1420 188 70 27 chr4 3153794 3154092 -181134570 - AluJb SINE Alu -1 311 1 1168 150 235 45 chr4 3154092 3154138 -181134524 - Tigger3b DNA MER2_type -2634 394 358 2085 97 7 29 chr4 3154138 3154474 -181134188 + AluSq SINE Alu 1 329 0 1168 150 235 45 chr4 3154474 3154714 -181133948 - Tigger3b DNA MER2_type -2670 358 1 223 25 50 25 chr4 3154792 3154832 -181133830 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 1319 109 0 0 chr4 3154839 3155014 -181133648 - AluSq SINE Alu -138 175 1 681 118 97 28 chr4 3155021 3155165 -181133497 - Tigger7 DNA MER2_type -27 2460 2307 2232 96 3 0 chr4 3155180 3155473 -181133189 - AluSg SINE Alu -15 295 2 528 148 0 0 chr4 3155495 3155576 -181133086 - FLAM SINE Alu -10 133 53 311 234 169 39 chr4 3155663 3155778 -181132884 - L1ME3A LINE L1 -300 5870 5771 2811 7 0 0 chr4 3155778 3156087 -181132575 + AluYb8 SINE Alu 1 309 -9 311 234 169 39 chr4 3156087 3156202 -181132460 - L1ME3A LINE L1 -399 5771 5610 * 705 231 77 10 chr4 3156201 3156398 -181132264 + L1 LINE L1 2831 3056 -3090 2412 55 0 3 chr4 3156398 3156691 -181131971 + AluY SINE Alu 1 292 -19 705 231 77 10 chr4 3156691 3156792 -181131870 + L1 LINE L1 3056 3149 -2997 2026 125 0 0 chr4 3156793 3157074 -181131588 + AluSx SINE Alu 1 281 -31 2312 99 0 0 chr4 3157089 3157391 -181131271 + AluSx SINE Alu 1 302 -10 2169 103 3 10 chr4 3157397 3157707 -181130955 + AluSp SINE Alu 6 313 0 2021 123 7 0 chr4 3157716 3158016 -181130646 + AluY SINE Alu 2 303 -8 552 242 114 14 chr4 3158019 3158238 -181130424 + L1 LINE L1 3299 3539 -2607 817 179 0 14 chr4 3159782 3159804 -181128858 - AluJo SINE Alu -174 138 117 306 0 0 0 chr4 3159804 3159838 -181128824 + (TG)n Simple_repeat Simple_repeat 2 35 0 817 179 0 14 chr4 3159838 3159955 -181128707 - AluJo SINE Alu -195 117 1 256 302 38 28 chr4 3162800 3162906 -181125756 + MIR SINE MIR 113 219 -43 305 290 57 8 chr4 3163327 3163451 -181125211 + MLT1J2 LTR MaLR 130 259 -191 210 351 84 30 chr4 3163562 3163693 -181124969 - MIR SINE MIR -106 156 19 1944 184 19 73 chr4 3164366 3164499 -181124163 + L1MB5 LINE L1 5680 5819 -355 2492 62 0 0 chr4 3164499 3164805 -181123857 + AluY SINE Alu 5 310 -1 1944 184 19 73 chr4 3164805 3165194 -181123468 + L1MB5 LINE L1 5819 6174 0 379 254 70 7 chr4 3166239 3166381 -181122281 + L1MEd LINE L1 454 604 -5926 300 286 51 46 chr4 3166828 3167018 -181121644 - MLT1H LTR MaLR -356 239 35 1982 85 12 0 chr4 3167404 3167662 -181121000 + AluSg SINE Alu 1 261 -49 284 319 58 21 chr4 3167924 3168115 -181120547 + HAL1 LINE L1 1516 1713 -794 367 369 83 23 chr4 3168340 3168719 -181119943 + L1MEd LINE L1 2316 2757 -3905 2213 116 0 0 chr4 3168899 3169200 -181119462 - AluSx SINE Alu -11 301 1 2282 106 3 3 chr4 3169212 3169524 -181119138 - AluSx SINE Alu 0 312 1 1025 152 0 39 chr4 3170257 3170435 -181118227 + FRAM SINE Alu 1 169 -7 1668 228 69 61 chr4 3170448 3170999 -181117663 - L1MB5 LINE L1 -13 6161 5603 2225 68 41 7 chr4 3170999 3171294 -181117368 - AluY SINE Alu -6 305 1 1668 228 69 61 chr4 3171294 3171335 -181117327 - L1MB5 LINE L1 -571 5603 5564 2117 123 0 13 chr4 3171338 3171647 -181117015 - AluSq SINE Alu -8 305 1 3142 86 35 5 chr4 3174381 3174812 -181113850 + MLT2A1 LTR ERVL 1 444 0 269 322 96 9 chr4 3175734 3175849 -181112813 - L2 LINE L2 -4 3309 3185 233 300 25 0 chr4 3175912 3175992 -181112670 - MLT1H LTR MaLR -388 161 80 295 323 158 29 chr4 3176734 3177050 -181111612 + L2 LINE L2 1552 1908 -1406 343 338 146 12 chr4 3177086 3177429 -181111233 + L2 LINE L2 2156 2544 -770 557 336 93 3 chr4 3177429 3177718 -181110944 + L1MD1 LINE L1 5687 6001 -241 * 1715 189 51 33 chr4 3177465 3177807 -181110855 + L1MB3 LINE L1 5741 6094 -89 2124 95 20 20 chr4 3177807 3178111 -181110551 - AluSx SINE Alu -8 304 1 1715 189 51 33 chr4 3178111 3178196 -181110466 + L1MB3 LINE L1 6094 6176 -7 455 271 12 66 chr4 3178268 3178434 -181110228 + L2 LINE L2 2617 2773 -541 351 233 33 0 chr4 3178705 3178795 -181109867 + MER20 DNA MER1_type 122 214 -5 206 239 0 0 chr4 3179791 3179837 -181108825 - L2 LINE L2 -19 3253 3208 1697 245 46 40 chr4 3180324 3180826 -181107836 + MLT1D LTR MaLR 1 505 0 303 240 21 0 chr4 3180963 3181059 -181107603 + L1ME3A LINE L1 5853 5950 -220 1544 128 4 0 chr4 3182498 3182724 -181105938 - AluSg/x SINE Alu -17 293 67 1393 94 0 62 chr4 3182731 3182940 -181105722 + AluSg/x SINE Alu 103 299 -13 1331 167 27 0 chr4 3182940 3183198 -181105464 + L1MB3 LINE L1 5919 6183 0 1393 94 0 62 chr4 3183198 3183212 -181105450 + AluSg/x SINE Alu 299 312 0 305 314 0 12 chr4 3183245 3183331 -181105331 + L1MEc LINE L1 1875 1959 -4437 1191 244 121 37 chr4 3184266 3184697 -181103965 - MLT1C LTR MaLR 0 467 1 26 0 0 0 chr4 3187587 3187613 -181101049 + GC_rich Low_complexity Low_complexity 1 26 0 1487 199 125 36 chr4 3187857 3188173 -181100489 - MSTC LTR MaLR 0 428 69 1983 129 0 0 chr4 3188173 3188467 -181100195 - AluSx SINE Alu -18 294 1 1487 199 125 36 chr4 3188467 3188542 -181100120 - MSTC LTR MaLR -359 69 2 266 324 14 0 chr4 3190871 3190945 -181097717 + Charlie2b DNA MER1_type 679 753 -2029 2387 107 11 22 chr4 3191139 3191495 -181097167 - THE1A LTR MaLR -1 354 3 11205 75 4 9 chr4 3191497 3191567 -181097095 - THE1A-int LTR MaLR 0 1580 1511 2681 93 6 0 chr4 3191567 3191920 -181096742 + THE1A LTR MaLR 1 355 0 11205 75 4 9 chr4 3191920 3192961 -181095701 - THE1A-int LTR MaLR -69 1511 478 2117 138 0 0 chr4 3192961 3193266 -181095396 + AluSx SINE Alu 1 305 -7 11205 75 4 9 chr4 3193266 3193742 -181094920 - THE1A-int LTR MaLR -1102 478 1 2540 97 17 3 chr4 3193742 3194092 -181094570 - THE1A LTR MaLR 0 355 1 993 276 64 60 chr4 3194130 3194662 -181094000 + Charlie2 DNA MER1_type 1886 2419 -443 1382 152 0 0 chr4 3194662 3194872 -181093790 + AluSg/x SINE Alu 83 292 -20 461 277 101 55 chr4 3194876 3195241 -181093421 + Charlie2 DNA MER1_type 2404 2785 -77 261 281 76 49 chr4 3196054 3196239 -181092423 + L1MEd LINE L1 1068 1257 -4862 1243 174 45 74 chr4 3196265 3196312 -181092350 + MER7A DNA MER2_type 35 82 -2956 2084 131 0 3 chr4 3196312 3196610 -181092052 - AluSx SINE Alu -15 297 1 1243 174 45 74 chr4 3196610 3196872 -181091790 + MER7A DNA MER2_type 82 333 -13 262 384 57 11 chr4 3196883 3197146 -181091516 + HAL1 LINE L1 1376 1650 -857 744 239 119 0 chr4 3198737 3198988 -181089674 + L1MB3 LINE L1 5895 6175 -8 228 86 0 0 chr4 3199223 3199258 -181089404 + (TA)n Simple_repeat Simple_repeat 2 36 0 636 125 158 33 chr4 3199260 3199380 -181089282 - AluJb SINE Alu -11 301 167 1230 186 19 0 chr4 3199499 3199714 -181088948 - AluJb SINE Alu -93 219 1 2201 95 3 16 chr4 3200027 3200342 -181088320 - AluSx SINE Alu -1 311 1 208 286 18 0 chr4 3200392 3200448 -181088214 + MIR SINE MIR 89 145 -63 480 320 90 48 chr4 3200926 3201238 -181087424 + L2 LINE L2 2067 2391 -923 343 284 0 71 chr4 3201317 3201472 -181087190 + L2 LINE L2 2627 2770 -544 602 302 61 63 chr4 3202970 3203381 -181085281 + MLT1J LTR MaLR 101 510 -1 768 190 135 6 chr4 3203455 3203618 -181085044 + AluSg/x SINE Alu 116 299 -11 373 363 73 12 chr4 3203624 3203883 -181084779 + L1MC/D LINE L1 5445 5719 -2089 299 160 35 128 chr4 3203886 3203975 -181084687 - MLT1C LTR MaLR -353 114 18 2347 68 0 3 chr4 3203975 3204269 -181084393 - AluY SINE Alu -18 293 1 1826 168 3 7 chr4 3204273 3204565 -181084097 - AluJo SINE Alu -21 291 1 647 197 15 38 chr4 3204567 3204699 -181083963 - FLAM_A SINE Alu -4 129 1 299 160 35 128 chr4 3204699 3204743 -181083919 - MLT1C LTR MaLR -453 14 1 2545 61 0 0 chr4 3205465 3205775 -181082887 + AluY SINE Alu 1 310 -1 365 268 101 0 chr4 3206158 3206296 -181082366 - L2 LINE L2 -318 2995 2844 * 392 312 211 19 chr4 3206282 3207110 -181081552 - L2 LINE L2 -788 2526 1540 755 276 174 2 chr4 3210055 3210508 -181078154 + HAL1 LINE L1 841 1371 -1136 1521 139 21 107 chr4 3210882 3211219 -181077443 - AluYb8 SINE Alu -10 308 1 180 111 0 0 chr4 3212069 3212096 -181076566 + (CGGTG)n Simple_repeat Simple_repeat 3 29 0 871 225 11 6 chr4 3212362 3212540 -181076122 + AluJo SINE Alu 113 291 -21 1388 130 57 57 chr4 3213299 3213561 -181075101 - AluJo SINE Alu -15 297 36 2238 84 20 0 chr4 3213707 3214005 -181074657 + AluSx SINE Alu 1 304 -8 1328 277 102 17 chr4 3214256 3214725 -181073937 + MLT1J LTR MaLR 2 510 -1 1616 271 88 18 chr4 3214904 3215575 -181073087 - L2 LINE L2 -905 2409 1692 45 75 0 22 chr4 3216549 3216683 -181071979 + GC_rich Low_complexity Low_complexity 1 131 0 21 57 0 0 chr4 3217878 3217913 -181070749 + GC_rich Low_complexity Low_complexity 1 35 0 808 163 0 15 chr4 3219858 3219875 -181068787 - FLAM_C SINE Alu -179 133 117 252 0 0 0 chr4 3219875 3219903 -181068759 + (TG)n Simple_repeat Simple_repeat 2 29 0 808 163 0 15 chr4 3219903 3220020 -181068642 - FLAM_C SINE Alu -195 117 1 233 265 59 0 chr4 3222865 3222933 -181065729 + MIR SINE MIR 113 184 -78 388 155 0 0 chr4 3272944 3273002 -181015660 - AluS SINE Alu -241 62 5 2169 92 14 7 chr4 3273161 3273476 -181015186 - AluSq SINE Alu 0 317 1 2229 73 49 0 chr4 3274383 3274670 -181013992 + AluY SINE Alu 1 301 -10 180 143 0 0 chr4 3274732 3274774 -181013888 + (T)n Simple_repeat Simple_repeat 1 42 0 505 135 0 0 chr4 3275306 3275380 -181013282 + FLAM_A SINE Alu 53 126 -16 1384 231 87 9 chr4 3275502 3275836 -181012826 - MLT1E LTR MaLR -8 585 226 606 263 44 12 chr4 3275862 3276022 -181012640 - MLT1E LTR MaLR -428 165 1 473 290 126 31 chr4 3276681 3277015 -181011647 + MLT1J LTR MaLR 38 440 -71 1783 150 46 4 chr4 3277017 3277297 -181011365 - AluJo SINE Alu -17 295 4 21 36 0 0 chr4 3277307 3277335 -181011327 + AT_rich Low_complexity Low_complexity 1 28 0 1968 121 4 0 chr4 3277438 3277710 -181010952 - AluSx SINE Alu -3 309 37 201 133 0 0 chr4 3277732 3277762 -181010900 + (CATA)n Simple_repeat Simple_repeat 3 32 0 22 70 0 0 chr4 3277857 3277900 -181010762 + AT_rich Low_complexity Low_complexity 1 43 0 6187 120 36 106 chr4 3277908 3278054 -181010608 + Tigger3b DNA MER2_type 2 157 -2871 2264 104 3 3 chr4 3278054 3278351 -181010311 - AluSq SINE Alu -16 297 1 6187 120 36 106 chr4 3278351 3279440 -181009222 + Tigger3b DNA MER2_type 157 1145 -1883 2076 156 3 9 chr4 3279440 3279779 -181008883 - MER1B DNA MER1_type 0 337 1 6187 120 36 106 chr4 3279779 3279841 -181008821 + Tigger3b DNA MER2_type 1145 1210 -21 232 208 194 14 chr4 3279960 3280032 -181008630 + LTR16A LTR ERVL 366 450 0 1014 250 122 22 chr4 3280032 3280392 -181008270 + HERV16 LTR ERVL 1 396 -4600 811 167 204 52 chr4 3280477 3280746 -181007916 - AluJb SINE Alu -2 310 1 2344 91 66 43 chr4 3280906 3281145 -181007517 - MER4A LTR ERV1 0 664 411 1983 146 7 0 chr4 3281145 3281440 -181007222 + AluSx SINE Alu 1 297 -15 2344 91 66 43 chr4 3281440 3281595 -181007067 - MER4A LTR ERV1 -253 411 261 640 110 0 20 chr4 3281601 3281701 -181006961 - MER4A LTR ERV1 -566 98 1 839 173 39 19 chr4 3281713 3281869 -181006793 + AluJb SINE Alu 129 287 -25 32 0 0 0 chr4 3281869 3281901 -181006761 + AT_rich Low_complexity Low_complexity 1 32 0 559 246 186 80 chr4 3282266 3282954 -181005708 - LTR41 LTR ERVL -12 761 1 2152 228 66 12 chr4 3282954 3283545 -181005117 + HERV16 LTR ERVL 829 1451 -3545 2325 253 110 21 chr4 3283565 3284311 -181004351 + HERV16 LTR ERVL 1758 2569 -2427 627 263 100 11 chr4 3284371 3284561 -181004101 + HERV16 LTR ERVL 2721 2927 -2069 2241 85 7 43 chr4 3284564 3284869 -181003793 - AluSp SINE Alu -19 294 1 657 191 32 8 chr4 3284872 3284998 -181003664 - FLAM_A SINE Alu -1 141 13 873 317 117 15 chr4 3285170 3285690 -181002972 + HERV16 LTR ERVL 3116 3688 -2076 526 264 59 42 chr4 3285707 3285946 -181002716 + HERV16 LTR ERVL 3421 3663 -1333 1024 335 113 25 chr4 3286009 3286948 -181001714 + HERV16 LTR ERVL 4082 5103 -661 539 284 105 4 chr4 3287382 3287611 -181001051 + LTR16A LTR ERVL 102 353 -97 295 315 64 34 chr4 3287740 3288007 -181000655 - L1ME LINE L1 -239 5882 5605 393 176 0 0 chr4 3288085 3288159 -181000503 + (TA)n Simple_repeat Simple_repeat 1 74 0 325 314 38 9 chr4 3288290 3288395 -181000267 - L1ME LINE L1 -2191 5617 5510 252 286 8 17 chr4 3288455 3288574 -181000088 - L1P LINE L1 -785 5361 5244 2250 112 0 0 chr4 3288770 3289065 -180999597 - AluSx SINE Alu -17 295 1 25 0 0 0 chr4 3289097 3289122 -180999540 + AT_rich Low_complexity Low_complexity 1 25 0 379 278 65 12 chr4 3289191 3289360 -180999302 - L1ME LINE L1 -1627 4519 4342 371 240 0 0 chr4 3289374 3289449 -180999213 + MIR SINE MIR 4 78 -184 261 342 68 8 chr4 3290009 3290126 -180998536 - L2 LINE L2 0 3313 3190 191 292 0 56 chr4 3290255 3290327 -180998335 - L2 LINE L2 -217 3055 2988 1844 147 0 41 chr4 3290333 3290652 -180998010 + AluJo SINE Alu 1 306 -6 296 211 18 0 chr4 3290848 3290905 -180997757 + MIR SINE MIR 8 65 -197 483 179 0 0 chr4 3291177 3291280 -180997382 - AluJb SINE Alu 0 312 209 1492 138 0 5 chr4 3291313 3291523 -180997139 - AluJb SINE Alu -101 211 3 1313 202 102 76 chr4 3291530 3291718 -180996944 - Charlie2 DNA MER1_type -50 2812 2630 450 0 0 0 chr4 3291718 3291768 -180996894 + (TTA)n Simple_repeat Simple_repeat 2 51 0 2125 104 7 0 chr4 3291770 3292048 -180996614 - AluSx SINE Alu -30 282 3 378 0 0 0 chr4 3292053 3292095 -180996567 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 2099 111 14 0 chr4 3292098 3292378 -180996284 - AluSg SINE Alu -26 284 1 1841 157 7 14 chr4 3292380 3292719 -180995943 - AluJb SINE Alu 0 312 1 1313 202 102 76 chr4 3292719 3292991 -180995671 - Charlie2 DNA MER1_type -236 2626 2362 212 75 0 25 chr4 3292991 3293031 -180995631 + (TA)n Simple_repeat Simple_repeat 2 40 0 1313 202 102 76 chr4 3293031 3293054 -180995608 - Charlie2 DNA MER1_type -500 2362 2341 2012 161 0 0 chr4 3293054 3293364 -180995298 + AluJb SINE Alu 1 310 -2 1313 202 102 76 chr4 3293364 3293490 -180995172 - Charlie2 DNA MER1_type -521 2341 2169 2317 109 3 0 chr4 3293514 3293816 -180994846 - AluSg SINE Alu -7 303 1 2178 117 7 0 chr4 3294018 3294308 -180994354 - AluSq SINE Alu -21 292 1 1718 159 66 3 chr4 3295184 3295610 -180993052 - L1M4 LINE L1 -587 5597 5149 307 66 0 66 chr4 3295631 3295692 -180992970 + (TTTCC)n Simple_repeat Simple_repeat 1 57 0 14974 185 35 17 chr4 3295692 3297122 -180991540 - L1PB1 LINE L1 -85 6782 5379 2364 96 0 7 chr4 3297122 3297423 -180991239 - AluSg SINE Alu -11 299 1 14974 185 35 17 chr4 3297423 3298881 -180989781 - L1PB1 LINE L1 -1488 5379 3948 2337 94 7 3 chr4 3298881 3299188 -180989474 - AluSq SINE Alu -4 309 2 14974 185 35 17 chr4 3299188 3299421 -180989241 - L1PB1 LINE L1 -2919 3948 3721 2235 115 0 3 chr4 3299421 3299717 -180988945 - AluSc SINE Alu -14 295 1 14974 185 35 17 chr4 3299717 3300263 -180988399 - L1PB1 LINE L1 -3146 3721 3186 2270 114 0 0 chr4 3300263 3300562 -180988100 - AluSx SINE Alu 0 312 14 14974 185 35 17 chr4 3300562 3300872 -180987790 - L1PB1 LINE L1 -3681 3186 2883 194 0 39 0 chr4 3300872 3300898 -180987764 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 14974 185 35 17 chr4 3300898 3301713 -180986949 - L1PB1 LINE L1 -3984 2883 1876 2332 88 0 38 chr4 3301713 3302032 -180986630 - AluSc SINE Alu -2 307 1 14974 185 35 17 chr4 3302032 3302526 -180986136 - L1PB1 LINE L1 -4991 1876 1392 940 202 21 0 chr4 3302523 3302711 -180985951 - L1PB1 LINE L1 -6666 197 6 * 1159 175 62 22 chr4 3302728 3303002 -180985660 - L1M4 LINE L1 -1384 4762 4478 209 262 0 0 chr4 3305487 3305529 -180983133 + (TCCG)n Simple_repeat Simple_repeat 2 43 0 228 292 0 0 chr4 3305713 3305778 -180982884 + (CA)n Simple_repeat Simple_repeat 1 65 0 770 74 11 63 chr4 3311521 3311710 -180976952 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 260 260 164 10 chr4 3312297 3312401 -180976261 + LTR37B LTR ERV1 197 316 -152 2304 51 34 3 chr4 3312516 3312759 -180975903 - AluSg SINE Alu -9 301 46 180 0 0 0 chr4 3312759 3312779 -180975883 + (C)n Simple_repeat Simple_repeat 1 20 0 2304 51 34 3 chr4 3312779 3312827 -180975835 - AluSg SINE Alu -264 46 1 287 204 0 84 chr4 3313169 3313311 -180975351 + (CCCCG)n Simple_repeat Simple_repeat 4 133 0 214 218 18 0 chr4 3317122 3317177 -180971485 + T-rich Low_complexity Low_complexity 5 60 0 326 253 91 0 chr4 3317630 3317729 -180970933 + MER91C DNA MER1_type 33 140 0 261 271 75 45 chr4 3317866 3317999 -180970663 - MIR SINE MIR -44 218 82 254 120 53 40 chr4 3318068 3318143 -180970519 + CT-rich Low_complexity Low_complexity 1 76 0 1465 201 45 17 chr4 3318144 3318433 -180970229 - AluJo SINE Alu -3 309 13 267 54 0 0 chr4 3318705 3318742 -180969920 + (TTA)n Simple_repeat Simple_repeat 2 38 0 1972 105 7 18 chr4 3318744 3319029 -180969633 - AluSx SINE Alu -30 282 1 306 373 67 34 chr4 3319650 3319918 -180968744 - L1MCa LINE L1 -4174 2252 1976 378 233 27 73 chr4 3319950 3320169 -180968493 - L1ME1 LINE L1 -262 5904 5696 528 116 67 37 chr4 3320172 3320292 -180968370 - L1M3 LINE L1 -626 5554 5429 659 261 28 138 chr4 3320312 3320422 -180968240 - L1M4 LINE L1 -3549 2597 2476 2226 95 0 0 chr4 3320422 3320716 -180967946 + AluSg SINE Alu 1 294 -16 659 261 28 138 chr4 3320716 3321005 -180967657 - L1M4 LINE L1 -3670 2476 2238 638 316 85 62 chr4 3321397 3321751 -180966911 - L1ME4a LINE L1 -239 5882 5521 978 217 99 15 chr4 3321756 3322088 -180966574 - HsTC2 DNA Tc2 -17 1881 1522 388 221 19 10 chr4 3322090 3322194 -180966468 - HsTC2 DNA Tc2 -1793 105 1 356 296 66 13 chr4 3322527 3322679 -180965983 - MER5A DNA MER1_type -1 188 29 237 232 274 0 chr4 3323085 3323180 -180965482 + L2 LINE L2 3193 3313 0 25 0 0 0 chr4 3323370 3323395 -180965267 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr4 3323413 3323435 -180965227 + AT_rich Low_complexity Low_complexity 1 22 0 3494 202 33 69 chr4 3323625 3323849 -180964813 - L1MB7 LINE L1 -61 6123 5892 2373 57 10 7 chr4 3323849 3324147 -180964515 - AluY SINE Alu -12 299 1 3494 202 33 69 chr4 3324147 3324197 -180964465 - L1MB7 LINE L1 -292 5892 5842 1965 106 7 0 chr4 3324197 3324472 -180964190 - AluSx SINE Alu -12 300 24 3494 202 33 69 chr4 3324472 3325159 -180963503 - L1MB7 LINE L1 -342 5842 5131 1584 133 0 4 chr4 3325159 3325392 -180963270 + AluJb SINE Alu 3 234 -78 3494 202 33 69 chr4 3325392 3326130 -180962532 - L1MB7 LINE L1 -1053 5131 4316 2264 91 3 3 chr4 3326137 3326446 -180962216 - AluSx SINE Alu -2 310 2 363 222 0 0 chr4 3326450 3326531 -180962131 - L1MB7 LINE L1 0 6184 6104 1961 229 50 12 chr4 3326654 3327169 -180961493 - L1MB3 LINE L1 -2 6181 5647 271 266 112 21 chr4 3327186 3327329 -180961333 + HAL1 LINE L1 538 693 -1814 284 222 25 25 chr4 3327900 3327981 -180960681 - L1MB3 LINE L1 -572 5590 5510 335 361 100 11 chr4 3327990 3328170 -180960492 + HAL1 LINE L1 822 1017 -1490 291 206 28 19 chr4 3328183 3328290 -180960372 + HAL1 LINE L1 1069 1176 -1331 637 275 117 43 chr4 3328633 3329048 -180959614 - MLT1D LTR MaLR 0 467 22 189 264 0 0 chr4 3331054 3331126 -180957536 + (CA)n Simple_repeat Simple_repeat 1 72 0 296 276 13 0 chr4 3335000 3335076 -180953586 + MER81 DNA DNA 2 78 -36 205 290 116 0 chr4 3335349 3335418 -180953244 - MIR SINE MIR -79 183 107 192 338 44 22 chr4 3337251 3337387 -180951275 - L3 LINE CR1 -103 1474 1336 * 291 269 47 32 chr4 3337380 3337541 -180951121 - MIR SINE MIR -12 250 89 2162 60 53 3 chr4 3340215 3340500 -180948162 + AluSc SINE Alu 1 299 -10 28 29 0 0 chr4 3341009 3341044 -180947618 + GC_rich Low_complexity Low_complexity 1 35 0 201 238 16 16 chr4 3341381 3341444 -180947218 + (CCCGG)n Simple_repeat Simple_repeat 3 65 0 48 72 0 0 chr4 3341564 3341661 -180947001 + GC_rich Low_complexity Low_complexity 1 97 0 34 42 0 0 chr4 3341749 3341797 -180946865 + GC_rich Low_complexity Low_complexity 1 48 0 204 184 41 0 chr4 3341926 3341975 -180946687 + C-rich Low_complexity Low_complexity 4 54 0 40 87 0 0 chr4 3342000 3342103 -180946559 + GC_rich Low_complexity Low_complexity 1 103 0 24 67 0 0 chr4 3342169 3342214 -180946448 + GC_rich Low_complexity Low_complexity 1 45 0 334 311 67 8 chr4 3343228 3343347 -180945315 - MIR SINE MIR -43 219 94 217 189 167 33 chr4 3345825 3345915 -180942747 - L2 LINE L2 -38 3234 3133 412 330 60 47 chr4 3348931 3349104 -180939558 - L1 LINE L1 -802 5344 5172 429 301 102 62 chr4 3349104 3349360 -180939302 - L1ME4a LINE L1 -1 6120 5127 335 299 11 0 chr4 3349364 3349451 -180939211 + L1ME4a LINE L1 5983 6070 -51 455 247 0 46 chr4 3553248 3553623 -180735039 + CT-rich Low_complexity Low_complexity 1 357 0 312 27 0 0 chr4 3554691 3554728 -180733934 + (CA)n Simple_repeat Simple_repeat 2 38 0 235 254 0 0 chr4 3555592 3555647 -180733015 + L2 LINE L2 3200 3254 -18 1823 191 91 7 chr4 3556196 3556625 -180732037 + L1MB3 LINE L1 5715 6179 -4 202 260 77 39 chr4 3557074 3557178 -180731484 - MER5A DNA MER1_type -75 114 7 542 325 86 53 chr4 3557631 3558274 -180730388 - L1MC4 LINE L1 -1 8041 7378 420 176 35 7 chr4 3558564 3558706 -180729956 + (TCTA)n Simple_repeat Simple_repeat 2 147 0 987 235 20 24 chr4 3558772 3559066 -180729596 - L1MC4 LINE L1 -978 7064 6772 252 0 0 0 chr4 3559239 3559267 -180729395 + (CA)n Simple_repeat Simple_repeat 2 29 0 433 333 165 2 chr4 3559876 3560276 -180728386 - L1MC4a LINE L1 -1492 6316 5852 * 740 244 14 14 chr4 3560267 3560480 -180728182 + L1MC/D LINE L1 5302 5514 -2294 371 302 74 18 chr4 3560513 3560900 -180727762 - L1MC4a LINE L1 -840 5306 4909 330 361 104 17 chr4 3561102 3561332 -180727330 - L1MC4a LINE L1 -1475 4671 4422 331 276 57 0 chr4 3561425 3561548 -180727114 + LTR33 LTR ERVL 84 213 -308 493 270 23 23 chr4 3562242 3562416 -180726246 + MLT1K LTR MaLR 394 567 -21 353 321 18 0 chr4 3562798 3562907 -180725755 - MIR SINE MIR -71 191 81 343 151 82 0 chr4 3563251 3563324 -180725338 + MLT1H LTR MaLR 471 549 0 1040 276 32 34 chr4 3563697 3564077 -180724585 + MLT1E2 LTR MaLR 1 379 -247 402 57 0 0 chr4 3564126 3564179 -180724483 + (TG)n Simple_repeat Simple_repeat 1 53 0 977 220 73 32 chr4 3564180 3564493 -180724169 - MLT2D LTR ERVL -84 330 5 614 302 22 0 chr4 3564494 3564719 -180723943 + MLT1E2 LTR MaLR 380 609 -17 181 292 167 8 chr4 3565262 3565382 -180723280 - MIR3 SINE MIR -58 150 12 2116 202 42 13 chr4 3566602 3567053 -180721609 - MLT1C LTR MaLR -2 465 2 2301 68 0 7 chr4 3567330 3567661 -180721001 + AluY SINE Alu 1 329 0 190 381 38 19 chr4 3567981 3568141 -180720521 + L2 LINE L2 2588 2750 -564 771 341 156 21 chr4 3568795 3569270 -180719392 + HAL1 LINE L1 959 1497 -1010 1196 88 13 0 chr4 3569270 3569429 -180719233 - AluSc SINE Alu -19 290 130 705 295 129 3 chr4 3569440 3569772 -180718890 + HAL1 LINE L1 1506 1879 -628 1643 118 141 0 chr4 3570004 3570267 -180718395 + AluJo SINE Alu 1 300 -12 239 246 16 0 chr4 3570570 3570631 -180718031 + L2 LINE L2 3182 3243 -70 653 288 40 0 chr4 3573115 3573313 -180715349 - MIR SINE MIR -56 206 1 1055 80 0 0 chr4 3574722 3574860 -180713802 - MER85 DNA T2_type -1 138 1 391 99 25 86 chr4 3575297 3575378 -180713284 - L1MC1 LINE L1 -18 6315 6240 389 188 16 83 chr4 3575395 3575587 -180713075 + C-rich Low_complexity Low_complexity 2 180 0 252 153 38 99 chr4 3575607 3575738 -180712924 + C-rich Low_complexity Low_complexity 4 126 0 2556 27 0 0 chr4 3578274 3578571 -180710091 + AluY SINE Alu 1 297 -14 834 164 0 16 chr4 3579570 3579753 -180708909 + CT-rich Low_complexity Low_complexity 1 180 0 * 864 141 0 27 chr4 3579747 3579932 -180708730 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 772 151 0 27 chr4 3579947 3580132 -180708530 + CT-rich Low_complexity Low_complexity 1 180 0 456 294 47 41 chr4 3580350 3580520 -180708142 + MIR SINE MIR 2 172 -90 192 354 18 26 chr4 3580988 3581101 -180707561 + MIR SINE MIR 27 138 -124 280 338 66 15 chr4 3581632 3581768 -180706894 - MIR SINE MIR -13 249 107 186 222 0 0 chr4 3582656 3582710 -180705952 + CT-rich Low_complexity Low_complexity 4 57 0 263 223 62 108 chr4 3583111 3583241 -180705421 + MLT1H LTR MaLR 421 532 -17 374 236 39 34 chr4 3583732 3583910 -180704752 + (CCCA)n Simple_repeat Simple_repeat 1 179 0 293 347 48 8 chr4 3584183 3584307 -180704355 - MER5A DNA MER1_type 0 189 61 254 408 25 0 chr4 3586554 3586750 -180701912 - L1MC/D LINE L1 -1911 5897 5697 525 293 118 84 chr4 3586893 3588529 -180700133 + HAL1 LINE L1 816 2507 0 378 301 55 7 chr4 3588891 3589037 -180699625 + L2 LINE L2 2925 3077 -195 430 257 133 9 chr4 3589679 3589956 -180698706 - MLT1C LTR MaLR -44 346 47 275 152 0 15 chr4 3591211 3591277 -180697385 + (CA)n Simple_repeat Simple_repeat 1 65 0 709 153 9 18 chr4 3591292 3591620 -180697042 + (CA)n Simple_repeat Simple_repeat 1 324 0 602 172 0 32 chr4 3591643 3591829 -180696833 + (CA)n Simple_repeat Simple_repeat 1 180 0 541 178 11 17 chr4 3591845 3592025 -180696637 + (CA)n Simple_repeat Simple_repeat 1 179 0 1616 226 106 47 chr4 3592314 3592804 -180695858 + MLT2B1 LTR ERVL 2 520 0 354 301 0 35 chr4 3592959 3593072 -180695590 - MIR SINE MIR -141 121 13 1143 265 60 34 chr4 3593332 3593717 -180694945 - MLT2C1 LTR ERVL 0 397 3 233 343 86 14 chr4 3593717 3593848 -180694814 + MIR3 SINE MIR 7 150 -58 324 292 26 39 chr4 3594553 3594707 -180693955 - L2 LINE L2 0 3272 3121 298 309 0 19 chr4 3595899 3596017 -180692645 - MIR SINE MIR -87 121 33 212 235 59 0 chr4 3596628 3596696 -180691966 + L2 LINE L2 3197 3268 -4 180 217 0 0 chr4 3597094 3597140 -180691522 + (TGGG)n Simple_repeat Simple_repeat 4 49 0 243 0 0 0 chr4 3597192 3597219 -180691443 + (TGGA)n Simple_repeat Simple_repeat 1 27 0 197 200 0 0 chr4 3598962 3599002 -180689660 - MIR SINE MIR -62 146 107 210 342 141 38 chr4 3600153 3600472 -180688190 - L2 LINE L2 -29 3284 2933 264 233 155 39 chr4 3600686 3600789 -180687873 - L2 LINE L2 -2521 793 679 243 302 123 12 chr4 3601333 3601516 -180687146 + MIR SINE MIR 13 207 -38 381 302 71 28 chr4 3601524 3601706 -180686956 - MIR SINE MIR -3 259 70 442 223 10 10 chr4 3601982 3602085 -180686577 + MER81 DNA DNA 12 114 0 467 307 67 21 chr4 3602953 3603191 -180685471 - L1MC2 LINE L1 -9 6335 6087 281 276 66 4 chr4 3603709 3603812 -180684850 - MIR SINE MIR -60 148 43 225 208 0 31 chr4 3605541 3605637 -180683025 + (CAATT)n Simple_repeat Simple_repeat 2 94 0 202 310 17 0 chr4 3605735 3605793 -180682869 + (CCCG)n Simple_repeat Simple_repeat 1 59 0 516 161 12 43 chr4 3605855 3606017 -180682645 + C-rich Low_complexity Low_complexity 5 161 0 180 0 0 0 chr4 3606054 3606074 -180682588 + (CAG)n Simple_repeat Simple_repeat 1 20 0 273 307 50 28 chr4 3606914 3607093 -180681569 - L1ME4a LINE L1 -1 6120 5938 893 233 76 76 chr4 3607276 3607723 -180680939 + MLT1C LTR MaLR 3 449 -18 1716 184 0 28 chr4 3607948 3608268 -180680394 - AluJb SINE Alu -1 311 1 258 267 120 0 chr4 3608272 3608347 -180680315 - MIR SINE MIR -18 244 161 724 332 47 32 chr4 3608489 3608932 -180679730 + L2 LINE L2 713 1162 -2152 420 305 35 6 chr4 3608936 3609110 -180679552 + L1ME2 LINE L1 3257 3435 -2711 * 3550 179 159 90 chr4 3609108 3609780 -180678882 + L1MC3 LINE L1 6398 7022 -763 229 322 23 0 chr4 3609780 3609867 -180678795 + MLT1F1 LTR MaLR 37 125 -442 3550 179 159 90 chr4 3609867 3610403 -180678259 + L1MC3 LINE L1 7022 7782 -3 * 3843 255 113 40 chr4 3610384 3612434 -180676228 + L1ME2 LINE L1 3443 5722 -442 2162 136 146 11 chr4 3612434 3612810 -180675852 + MSTA LTR MaLR 2 428 0 3843 255 113 40 chr4 3612810 3613287 -180675375 + L1ME2 LINE L1 5722 6163 -1 470 294 76 34 chr4 3613327 3613565 -180675097 + L2 LINE L2 3066 3313 0 353 343 62 21 chr4 3613568 3614037 -180674625 + L1MC/D LINE L1 4691 5178 -968 287 288 47 26 chr4 3614157 3614528 -180674134 + L1MC/D LINE L1 5177 5563 -601 388 344 60 14 chr4 3615363 3615581 -180673081 + MIR SINE MIR 13 240 -22 212 320 102 15 chr4 3616078 3616284 -180672378 + L2 LINE L2 2454 2677 -637 971 247 160 9 chr4 3616796 3617140 -180671522 - MSTD LTR MaLR 0 396 1 355 273 93 19 chr4 3618112 3618273 -180670389 + Charlie8 DNA MER1_type 50 222 -2195 2484 68 0 3 chr4 3618829 3619140 -180669522 - AluY SINE Alu -1 310 1 21 36 0 0 chr4 3619437 3619465 -180669197 + AT_rich Low_complexity Low_complexity 1 28 0 211 279 49 0 chr4 3619469 3619530 -180669132 + L2 LINE L2 3250 3313 0 267 316 54 57 chr4 3619587 3619919 -180668743 - L1 LINE L1 -2294 3852 3522 363 228 0 0 chr4 3620186 3620278 -180668384 + (TG)n Simple_repeat Simple_repeat 1 92 0 361 385 23 8 chr4 3621080 3621337 -180667325 + HERVL LTR ERVL 4346 4606 -1048 318 291 146 25 chr4 3623149 3623307 -180665355 - MIR SINE MIR -78 184 8 1334 209 40 62 chr4 3623474 3623960 -180664702 - MER51A LTR ERV1 0 634 1 2214 92 0 31 chr4 3624010 3624327 -180664335 - AluY SINE Alu -4 307 1 586 263 97 64 chr4 3624741 3625114 -180663548 - MLT1D LTR MaLR -115 390 6 254 191 0 0 chr4 3625172 3625219 -180663443 + L1MC3 LINE L1 7103 7149 -636 492 294 37 0 chr4 3625339 3625526 -180663136 + L1MC3 LINE L1 7583 7776 -9 1874 131 19 44 chr4 3625542 3625862 -180662800 + AluSx SINE Alu 1 312 0 243 243 0 34 chr4 3627400 3627577 -180661085 + CT-rich Low_complexity Low_complexity 4 174 0 303 186 70 23 chr4 3627581 3627710 -180660952 + (CTCA)n Simple_repeat Simple_repeat 2 136 0 * 308 306 6 44 chr4 3627631 3627814 -180660848 + C-rich Low_complexity Low_complexity 1 176 0 * 473 261 0 43 chr4 3627739 3627923 -180660739 + CT-rich Low_complexity Low_complexity 4 179 0 203 240 0 38 chr4 3627946 3628129 -180660533 + CT-rich Low_complexity Low_complexity 4 179 0 192 380 50 0 chr4 3629648 3629748 -180658914 - MIR SINE MIR -79 183 79 201 293 0 0 chr4 3630103 3630178 -180658484 + CT-rich Low_complexity Low_complexity 1 75 0 1018 126 6 16 chr4 3631051 3631091 -180657571 + (GGGA)n Simple_repeat Simple_repeat 1 219 0 1018 126 6 16 chr4 3631091 3631273 -180657389 + (GGGA)n Simple_repeat Simple_repeat 1 180 0 401 318 28 5 chr4 3631861 3632072 -180656590 + L1MC4 LINE L1 6798 7013 -1029 23 0 0 0 chr4 3632584 3632607 -180656055 + AT_rich Low_complexity Low_complexity 1 23 0 1355 179 50 22 chr4 3632990 3633011 -180655651 + MLT1A2 LTR MaLR 48 67 -307 2906 85 0 8 chr4 3633011 3633389 -180655273 - THE1C LTR MaLR 0 375 1 1355 179 50 22 chr4 3633389 3633685 -180654977 + MLT1A2 LTR MaLR 67 374 0 241 241 17 0 chr4 3633936 3633994 -180654668 + GA-rich Low_complexity Low_complexity 2 60 0 698 299 40 26 chr4 3634651 3634999 -180653663 + L1M4 LINE L1 4553 4905 -1241 189 273 0 0 chr4 3635791 3635835 -180652827 + MIR SINE MIR 216 259 -3 233 384 13 25 chr4 3637430 3637589 -180651073 - L2 LINE L2 -434 2880 2724 856 79 28 17 chr4 3638178 3638355 -180650307 + (TG)n Simple_repeat Simple_repeat 2 180 0 218 214 0 36 chr4 3638438 3638494 -180650168 + CT-rich Low_complexity Low_complexity 2 55 0 223 120 20 20 chr4 3638542 3638592 -180650070 + CT-rich Low_complexity Low_complexity 4 53 0 1184 288 77 23 chr4 3638647 3639130 -180649532 - MLT1H LTR MaLR -4 545 37 945 224 13 47 chr4 3639661 3639893 -180648769 + MER58A DNA MER1_type 1 224 0 257 329 125 54 chr4 3640138 3640433 -180648229 + L2 LINE L2 2957 3272 0 183 80 0 0 chr4 3640436 3640461 -180648201 + (GGAA)n Simple_repeat Simple_repeat 2 26 0 1026 155 3 8 chr4 3640477 3640852 -180647810 + (TGGA)n Simple_repeat Simple_repeat 1 372 0 384 271 16 8 chr4 3641638 3641760 -180646902 - MER45A DNA AcHobo -19 159 37 576 125 0 61 chr4 3642671 3643199 -180645463 + (CA)n Simple_repeat Simple_repeat 1 495 0 707 35 40 52 chr4 3645322 3645496 -180643166 + (CA)n Simple_repeat Simple_repeat 1 172 0 434 271 87 5 chr4 3645496 3645714 -180642948 - MER89 LTR ERV1 -323 236 1 743 225 12 0 chr4 3647001 3647170 -180641492 + MER41D LTR ERV1 387 557 0 427 256 51 70 chr4 3648745 3648901 -180639761 + MIR SINE MIR 108 260 -2 203 163 0 61 chr4 3648918 3648967 -180639695 + GA-rich Low_complexity Low_complexity 6 51 0 1210 217 127 42 chr4 3649768 3650178 -180638484 - LTR56 LTR ERV1 0 445 1 498 221 31 0 chr4 3650236 3650363 -180638299 + MER57A LTR ERV1 1 131 -272 474 269 83 0 chr4 3650372 3650528 -180638134 + MER57A LTR ERV1 235 403 0 235 250 18 0 chr4 3652203 3652259 -180636403 + MIR3 SINE MIR 109 165 -43 218 331 230 25 chr4 3652699 3653095 -180635567 - L2 LINE L2 -540 2774 2298 233 305 191 0 chr4 3653239 3653344 -180635318 - MIR SINE MIR -62 146 22 459 233 0 0 chr4 3653361 3653490 -180635172 + (CA)n Simple_repeat Simple_repeat 1 129 0 202 258 21 0 chr4 3654808 3654872 -180633790 - MIR SINE MIR -104 158 94 291 344 40 8 chr4 3655277 3655402 -180633260 + L3 LINE CR1 1359 1487 -90 1328 226 72 0 chr4 3655426 3655785 -180632877 + L1MB3 LINE L1 5776 6160 -23 206 316 153 45 chr4 3655832 3656145 -180632517 - L2 LINE L2 -75 3197 2851 277 165 37 28 chr4 3656315 3656394 -180632268 - MIR SINE MIR -78 184 106 338 361 38 13 chr4 3657968 3658126 -180630536 + HAL1b LINE L1 514 675 -673 1184 204 91 14 chr4 3658892 3659229 -180629433 - MLT1A1 LTR MaLR 0 365 43 312 208 78 0 chr4 3659449 3659526 -180629136 - MLT1A1 LTR MaLR -291 83 1 456 332 80 9 chr4 3659645 3659970 -180628692 + LTR16A1 LTR ERVL 59 406 -51 213 325 26 0 chr4 3661151 3661265 -180627397 + (CTCA)n Simple_repeat Simple_repeat 2 118 0 571 250 61 80 chr4 3661989 3662365 -180626297 - MLT1B LTR MaLR -15 375 7 361 292 72 41 chr4 3662652 3662847 -180625815 + MIR SINE MIR 60 260 -2 420 278 75 79 chr4 3664226 3664453 -180624209 + HAL1 LINE L1 1093 1318 -1189 284 221 0 13 chr4 3664624 3664701 -180623961 - L1M4 LINE L1 -1162 4984 4909 330 361 104 17 chr4 3664903 3665133 -180623529 - L1M4 LINE L1 -1475 4671 4422 331 276 57 0 chr4 3665226 3665349 -180623313 + LTR33 LTR ERVL 84 213 -308 493 270 23 23 chr4 3666043 3666217 -180622445 + MLT1K LTR MaLR 394 567 -21 353 321 18 0 chr4 3666599 3666708 -180621954 - MIR SINE MIR -71 191 81 343 151 82 0 chr4 3667052 3667125 -180621537 + MLT1H LTR MaLR 471 549 0 1100 266 32 34 chr4 3667498 3667878 -180620784 + MLT1E2 LTR MaLR 1 379 -247 420 55 0 0 chr4 3667927 3667982 -180620680 + (TG)n Simple_repeat Simple_repeat 1 55 0 1028 218 50 34 chr4 3667983 3668304 -180620358 - MLT2D LTR ERVL -84 330 5 614 302 22 0 chr4 3668305 3668530 -180620132 + MLT1E2 LTR MaLR 380 609 -17 1053 139 0 11 chr4 3768800 3769338 -180519324 + (CATTC)n Satellite Satellite 1 532 0 1086 124 0 5 chr4 3769349 3769783 -180518879 + (CATTC)n Satellite Satellite 1 431 0 1110 127 0 0 chr4 3769827 3770187 -180518475 + (CATTC)n Satellite Satellite 1 360 0 306 147 0 0 chr4 3770210 3770278 -180518384 + (CATTC)n Satellite Satellite 2 69 0 1093 129 2 27 chr4 3770419 3770962 -180517700 + (CATTC)n Satellite Satellite 1 529 0 945 131 0 16 chr4 3770992 3771356 -180517306 + (CATTC)n Satellite Satellite 1 359 0 1110 100 0 0 chr4 3771397 3771577 -180517085 + (CATTC)n Satellite Satellite 1 180 0 514 164 0 51 chr4 3771593 3771770 -180516892 + (CATTC)n Satellite Satellite 2 169 0 1026 135 0 17 chr4 3771892 3772536 -180516126 + (CATTC)n Satellite Satellite 1 633 0 390 159 0 0 chr4 3772552 3772640 -180516022 + (CATTC)n Satellite Satellite 2 89 0 1311 94 0 7 chr4 3772652 3773201 -180515461 + (CATTC)n Satellite Satellite 1 544 0 360 111 0 0 chr4 3773222 3773285 -180515377 + (CATTC)n Satellite Satellite 2 64 0 876 149 0 0 chr4 3773296 3773470 -180515192 + (CATTC)n Satellite Satellite 1 174 0 787 136 6 6 chr4 3773482 3773658 -180515004 + (CATTC)n Satellite Satellite 2 177 0 282 29 0 0 chr4 3773686 3773721 -180514941 + (CATTC)n Satellite Satellite 2 36 0 938 117 0 6 chr4 3773736 3773907 -180514755 + (CATTC)n Satellite Satellite 2 171 0 1081 105 4 4 chr4 3773922 3774175 -180514487 + (CATTC)n Satellite Satellite 1 253 0 882 131 0 0 chr4 3774187 3774355 -180514307 + (CATTC)n Satellite Satellite 2 169 0 320 43 22 0 chr4 3774367 3774413 -180514249 + (CATTC)n Satellite Satellite 2 48 0 855 111 0 36 chr4 3774519 3774799 -180513863 + (GAATG)n Satellite Satellite 1 269 0 270 132 0 0 chr4 3774810 3774863 -180513799 + (GAATG)n Satellite Satellite 2 54 0 1062 99 0 0 chr4 3774875 3775046 -180513616 + (GAATG)n Satellite Satellite 4 174 0 929 128 0 23 chr4 3775077 3775688 -180512974 + (GAATG)n Satellite Satellite 1 773 0 881 124 0 27 chr4 3775704 3775889 -180512773 + (GAATG)n Satellite Satellite 1 180 0 951 110 0 0 chr4 3775908 3776113 -180512549 + (GAATG)n Satellite Satellite 1 205 0 618 189 0 0 chr4 3776128 3776303 -180512359 + (GAATG)n Satellite Satellite 2 176 0 1026 122 0 0 chr4 3776324 3776504 -180512158 + (GAATG)n Satellite Satellite 1 180 0 954 121 0 0 chr4 3776515 3776723 -180511939 + (GAATG)n Satellite Satellite 1 208 0 1047 112 0 0 chr4 3776739 3776918 -180511744 + (GAATG)n Satellite Satellite 2 180 0 268 169 12 12 chr4 3776930 3777013 -180511649 + (GAATG)n Satellite Satellite 2 84 0 991 106 6 6 chr4 3777024 3777203 -180511459 + (GAATG)n Satellite Satellite 2 180 0 1122 100 0 0 chr4 3777214 3777394 -180511268 + (GAATG)n Satellite Satellite 1 180 0 939 153 0 0 chr4 3777438 3777801 -180510861 + (GAATG)n Satellite Satellite 1 363 0 969 146 0 2 chr4 3777817 3778136 -180510526 + (GAATG)n Satellite Satellite 1 498 0 858 107 0 0 chr4 3778151 3778301 -180510361 + (GAATG)n Satellite Satellite 2 151 0 1140 101 0 0 chr4 3778312 3778490 -180510172 + (GAATG)n Satellite Satellite 3 180 0 261 155 0 0 chr4 3778506 3778564 -180510098 + (GAATG)n Satellite Satellite 4 61 0 1014 122 0 14 chr4 3778581 3778942 -180509720 + (GAATG)n Satellite Satellite 1 356 0 1014 155 0 0 chr4 3778957 3779376 -180509286 + (GAATG)n Satellite Satellite 1 419 0 1132 80 5 8 chr4 3779387 3779596 -180509066 + (GAATG)n Satellite Satellite 1 388 0 1191 81 0 0 chr4 3779607 3779780 -180508882 + (GAATG)n Satellite Satellite 2 174 0 383 170 10 0 chr4 3779793 3779893 -180508769 + (GAATG)n Satellite Satellite 2 102 0 1035 136 1 4 chr4 3780023 3780537 -180508125 + (GAATG)n Satellite Satellite 2 680 0 1068 106 0 0 chr4 3780554 3780733 -180507929 + (GAATG)n Satellite Satellite 1 179 0 1122 100 0 0 chr4 3780748 3780928 -180507734 + (GAATG)n Satellite Satellite 1 180 0 1104 120 0 6 chr4 3780972 3781332 -180507330 + (GAATG)n Satellite Satellite 1 536 0 1044 107 0 2 chr4 3781351 3781581 -180507081 + (GAATG)n Satellite Satellite 1 409 0 781 129 6 6 chr4 3781593 3781756 -180506906 + (GAATG)n Satellite Satellite 2 164 0 1092 112 0 17 chr4 3781768 3782211 -180506451 + (GAATG)n Satellite Satellite 1 612 0 1101 98 0 0 chr4 3782223 3782616 -180506046 + (GAATG)n Satellite Satellite 1 393 0 781 129 6 6 chr4 3782628 3782791 -180505871 + (GAATG)n Satellite Satellite 2 164 0 927 139 0 0 chr4 3782807 3782987 -180505675 + (GAATG)n Satellite Satellite 1 180 0 1068 115 0 0 chr4 3782998 3783262 -180505400 + (GAATG)n Satellite Satellite 1 264 0 331 310 18 0 chr4 3885059 3885172 -180403490 - L1MC4 LINE L1 -7 8035 7921 1906 208 50 2 chr4 3885316 3885797 -180402865 - L1 LINE L1 -2178 3968 3465 721 128 29 87 chr4 3885797 3885969 -180402693 - MSTC LTR MaLR -242 186 25 454 266 74 87 chr4 3887113 3887342 -180401320 + HAL1 LINE L1 1093 1318 -1189 1979 160 0 0 chr4 3887542 3887854 -180400808 - AluJb SINE Alu 0 312 1 1032 191 14 0 chr4 3887855 3888065 -180400597 + Tigger2 DNA MER2_type 2481 2693 -25 441 306 38 25 chr4 3889261 3889418 -180399244 + MIR SINE MIR 38 196 -66 4094 269 50 10 chr4 3889657 3891176 -180397486 - L1MEc LINE L1 -2515 3700 2167 317 284 88 10 chr4 3891248 3891442 -180397220 - L1MEc LINE L1 -6153 243 35 321 288 174 29 chr4 3891517 3891798 -180396864 + L2 LINE L2 2949 3270 -2 244 350 49 0 chr4 3891918 3892041 -180396621 + MIR SINE MIR 2 130 -132 323 324 99 38 chr4 3892157 3892419 -180396243 - L2 LINE L2 -35 3278 3001 1460 165 14 25 chr4 3892571 3892856 -180395806 + MER21B LTR ERV1 1 282 -581 374 113 0 70 chr4 3892855 3892926 -180395736 + MER21B LTR ERV1 217 282 -581 * 366 159 0 0 chr4 3892933 3892996 -180395666 + MER21B LTR ERV1 220 282 -581 2026 196 70 0 chr4 3893003 3893447 -180395215 + MER21B LTR ERV1 220 694 -169 332 182 39 0 chr4 3893444 3893521 -180395141 + MER21B LTR ERV1 615 694 -169 * 579 244 72 16 chr4 3893518 3893711 -180394951 + MER21B LTR ERV1 615 818 -45 521 118 0 21 chr4 3895784 3895877 -180392785 + (GGGA)n Simple_repeat Simple_repeat 2 92 0 981 248 100 12 chr4 3896121 3896541 -180392121 - MLT1C LTR MaLR -10 457 1 191 250 0 54 chr4 3898498 3898554 -180390108 - L2 LINE L2 -228 3044 2992 183 208 19 57 chr4 3899378 3899431 -180389231 + MIR3 SINE MIR 112 162 -46 248 290 30 40 chr4 3899576 3899676 -180388986 + MIR SINE MIR 108 206 -56 2217 219 50 9 chr4 3899805 3900384 -180388278 - LTR26 LTR ERV1 0 603 1 245 292 18 48 chr4 3901537 3901705 -180386957 + (CCCA)n Simple_repeat Simple_repeat 2 164 0 395 302 11 22 chr4 3901927 3902106 -180386556 + (TCCA)n Simple_repeat Simple_repeat 2 178 0 598 298 174 11 chr4 3902190 3902546 -180386116 - L2 LINE L2 0 3313 2900 283 402 16 16 chr4 3903139 3903323 -180385339 + MIR SINE MIR 23 206 -56 238 300 0 63 chr4 3904509 3904699 -180383963 + CT-rich Low_complexity Low_complexity 3 180 0 * 295 262 0 78 chr4 3904559 3904750 -180383912 + C-rich Low_complexity Low_complexity 2 177 0 28 0 0 0 chr4 3905629 3905657 -180383005 + AT_rich Low_complexity Low_complexity 1 28 0 422 286 86 0 chr4 3906033 3906173 -180382489 - MIR SINE MIR -106 156 5 372 297 182 0 chr4 3906174 3906339 -180382323 - MIR SINE MIR -3 259 65 1087 276 100 22 chr4 3906453 3906816 -180381846 + L1ME LINE L1 4755 5088 -1078 1585 168 0 11 chr4 3906816 3907102 -180381560 + AluJb SINE Alu 30 312 0 1087 276 100 22 chr4 3907102 3907485 -180381177 + L1ME LINE L1 5088 5578 -588 647 151 0 92 chr4 3907485 3907592 -180381070 - MLT1C LTR MaLR -329 138 47 1448 147 140 29 chr4 3907592 3907864 -180380798 - AluJo SINE Alu 0 302 1 647 151 0 92 chr4 3907864 3907908 -180380754 - MLT1C LTR MaLR -420 47 1 3921 101 45 62 chr4 3908286 3908931 -180379731 + MER51A LTR ERV1 1 634 0 924 236 13 81 chr4 3909008 3909317 -180379345 + MLT1A2 LTR MaLR 4 291 -83 455 267 9 0 chr4 3909321 3909437 -180379225 + MLT1A2 LTR MaLR 258 374 0 303 359 109 41 chr4 3909710 3910156 -180378506 + HAL1b LINE L1 3 438 -893 2703 118 3 0 chr4 3910156 3910530 -180378132 + THE1C LTR MaLR 1 375 0 1576 187 13 13 chr4 3911093 3911403 -180377259 - LOR1a LTR ERV1 0 497 188 603 156 15 46 chr4 3911405 3911754 -180376908 + GA-rich Low_complexity Low_complexity 1 337 0 643 115 0 73 chr4 3911766 3911958 -180376704 + (GGGA)n Simple_repeat Simple_repeat 2 179 0 404 166 14 48 chr4 3911960 3912105 -180376557 + GA-rich Low_complexity Low_complexity 4 143 0 502 266 62 49 chr4 3912160 3912386 -180376276 + L1M4 LINE L1 2177 2405 -3741 1495 217 48 0 chr4 3913255 3913592 -180375070 + MLT1B LTR MaLR 7 359 -31 2209 131 39 25 chr4 3913820 3914178 -180374484 + THE1B LTR MaLR 2 364 0 379 313 142 4 chr4 3914586 3914819 -180373843 - MLT1H LTR MaLR -284 265 1 495 108 21 59 chr4 3915189 3915375 -180373287 + (TG)n Simple_repeat Simple_repeat 2 180 0 202 143 26 65 chr4 3915397 3915551 -180373111 + (TG)n Simple_repeat Simple_repeat 2 149 0 377 183 30 55 chr4 3915574 3915738 -180372924 + (TG)n Simple_repeat Simple_repeat 1 160 0 417 144 45 61 chr4 3915750 3916188 -180372474 + (TG)n Simple_repeat Simple_repeat 1 430 0 253 116 87 0 chr4 3917768 3917837 -180370825 + (CA)n Simple_repeat Simple_repeat 2 76 0 874 138 44 3 chr4 3917941 3918291 -180370371 + (TGGA)n Simple_repeat Simple_repeat 1 364 0 853 100 47 0 chr4 3918308 3918478 -180370184 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 843 94 53 0 chr4 3918515 3918686 -180369976 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 724 144 28 31 chr4 3918702 3919059 -180369603 + (TGGA)n Simple_repeat Simple_repeat 1 355 0 681 142 35 0 chr4 3919109 3919278 -180369384 + (TGGA)n Simple_repeat Simple_repeat 4 178 0 329 313 12 6 chr4 3919640 3919803 -180368859 + (TG)n Simple_repeat Simple_repeat 1 164 0 608 253 57 26 chr4 3919869 3920063 -180368599 + MER63A DNA MER1_type 1 200 -10 258 305 76 29 chr4 3920516 3920621 -180368041 - L2 LINE L2 -4 3268 3159 240 263 113 42 chr4 3921513 3921726 -180366936 - L2 LINE L2 -248 3065 2838 374 285 108 37 chr4 3921836 3922050 -180366612 - MIR SINE MIR -24 238 10 1167 140 0 7 chr4 3922262 3922591 -180366071 + (CTCA)n Simple_repeat Simple_repeat 1 502 0 1056 141 0 0 chr4 3922591 3922768 -180365894 + (CTCA)n Simple_repeat Simple_repeat 3 179 0 513 121 0 0 chr4 3922815 3922898 -180365764 + (CTCA)n Simple_repeat Simple_repeat 1 83 0 402 74 0 0 chr4 3924698 3924752 -180363910 + (TGAA)n Simple_repeat Simple_repeat 4 57 0 241 287 130 0 chr4 3924976 3925084 -180363578 + MIR SINE MIR 80 201 -61 290 151 0 129 chr4 3925403 3925496 -180363166 + L2 LINE L2 3003 3083 -189 295 263 150 0 chr4 3927345 3927478 -180361184 + L2 LINE L2 2651 2803 -511 2117 102 0 0 chr4 3928140 3928424 -180360238 + AluSx SINE Alu 9 292 -20 499 282 0 39 chr4 3929116 3929297 -180359365 + (CA)n Simple_repeat Simple_repeat 1 174 0 198 319 0 0 chr4 3929315 3929459 -180359203 + (CA)n Simple_repeat Simple_repeat 1 144 0 508 341 0 9 chr4 3929481 3929980 -180358682 + (CA)n Simple_repeat Simple_repeat 1 494 0 547 350 0 0 chr4 3930007 3930370 -180358292 + (CA)n Simple_repeat Simple_repeat 1 363 0 398 388 0 0 chr4 3930402 3930580 -180358082 + (CA)n Simple_repeat Simple_repeat 1 178 0 569 256 8 0 chr4 3931050 3931183 -180357479 + MLT1C LTR MaLR 320 453 -14 499 245 71 0 chr4 3931907 3932062 -180356600 - MER92B LTR ERV1 -397 239 74 406 306 52 8 chr4 3932117 3932228 -180356434 + L1MC4a LINE L1 4920 5039 -1107 797 113 38 38 chr4 3932228 3932361 -180356301 + FLAM_C SINE Alu 1 133 0 406 306 52 8 chr4 3932361 3932383 -180356279 + L1MC4a LINE L1 5039 5059 -1087 549 346 67 38 chr4 3932625 3933278 -180355384 + L1MC4a LINE L1 5254 5925 -1883 625 321 130 21 chr4 3933298 3933774 -180354888 + L1MEc LINE L1 38 565 -5831 878 264 43 58 chr4 3933936 3933968 -180354694 + L1MEc LINE L1 730 761 -5444 342 0 0 0 chr4 3933968 3934006 -180354656 + (TAAA)n Simple_repeat Simple_repeat 1 38 0 878 264 43 58 chr4 3934006 3934557 -180354105 + L1MEc LINE L1 761 1191 -5014 2195 109 0 0 chr4 3934557 3934851 -180353811 + AluSx SINE Alu 2 295 -17 878 264 43 58 chr4 3934851 3934865 -180353797 + L1MEc LINE L1 1191 1204 -5001 824 139 16 4 chr4 3934911 3935429 -180353233 + (CA)n Simple_repeat Simple_repeat 1 524 0 468 319 47 0 chr4 3935429 3935664 -180352998 + L1MEc LINE L1 1396 1641 -4755 580 295 52 41 chr4 3935691 3936057 -180352605 + L1MCc LINE L1 51 420 -6003 1023 257 70 43 chr4 3936335 3937101 -180351561 + L1MCc LINE L1 1729 2473 -4649 2275 86 0 0 chr4 3937101 3937392 -180351270 + AluY SINE Alu 1 291 -20 684 67 0 0 chr4 3937399 3937489 -180351173 + (TA)n Simple_repeat Simple_repeat 1 90 0 1023 257 70 43 chr4 3937489 3937635 -180351027 + L1MCc LINE L1 2478 2925 -4197 352 316 95 38 chr4 3937713 3938329 -180350333 + L1MC4 LINE L1 7315 8042 0 236 275 72 0 chr4 3938561 3938630 -180350032 + MLT1K LTR MaLR 169 242 -346 227 339 148 16 chr4 3938687 3938876 -180349786 + MLT1K LTR MaLR 375 588 0 619 254 19 17 chr4 3939100 3939315 -180349347 + L1ME LINE L1 5392 5593 -577 207 218 0 0 chr4 3939324 3939379 -180349283 + (TG)n Simple_repeat Simple_repeat 2 56 0 1627 177 5 124 chr4 3939390 3939785 -180348877 + Tigger3(Golem) DNA MER2_type 1 3028 -1 329 295 0 71 chr4 3939956 3940068 -180348594 + L1MCc LINE L1 2856 2959 -3982 392 127 0 13 chr4 3940100 3940179 -180348483 + (TG)n Simple_repeat Simple_repeat 1 78 0 1901 117 0 0 chr4 3942977 3943243 -180345419 + AluSx SINE Alu 30 295 -17 396 340 49 21 chr4 3943292 3943600 -180345062 + L1ME3A LINE L1 987 1274 -4931 255 299 73 15 chr4 3943616 3943753 -180344909 + L1ME3A LINE L1 4294 4438 -1777 1989 141 3 3 chr4 3943779 3944084 -180344578 + AluSx SINE Alu 1 305 -7 1575 226 52 39 chr4 3944087 3944222 -180344440 - MLT2D LTR ERVL 0 464 332 2277 77 0 0 chr4 3944222 3944507 -180344155 - AluSg SINE Alu -16 294 10 1575 226 52 39 chr4 3944507 3944847 -180343815 - MLT2D LTR ERVL -132 332 1 510 180 17 133 chr4 3944876 3945109 -180343553 + L1ME3A LINE L1 4477 4682 -1533 342 254 0 0 chr4 3945111 3945221 -180343441 + (TG)n Simple_repeat Simple_repeat 2 111 0 814 292 75 53 chr4 3945325 3946110 -180342552 + L1ME3A LINE L1 4732 5532 -707 548 143 51 41 chr4 3946128 3946226 -180342436 + FLAM_A SINE Alu 37 135 -7 447 209 133 0 chr4 3946237 3946342 -180342320 + L1ME3A LINE L1 5554 5672 -559 375 273 93 12 chr4 3946444 3946605 -180342057 + L1ME3A LINE L1 5847 6020 -219 311 282 24 0 chr4 3948330 3948415 -180340247 - MIR SINE MIR -168 94 8 978 151 19 23 chr4 3948641 3949081 -180339581 + (TGGA)n Simple_repeat Simple_repeat 1 438 0 631 127 17 0 chr4 3950260 3950378 -180338284 + (TGGA)n Simple_repeat Simple_repeat 1 120 0 321 355 24 6 chr4 3950387 3950556 -180338106 + (TGGG)n Simple_repeat Simple_repeat 3 174 0 840 158 11 6 chr4 3950763 3950940 -180337722 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 623 243 5 5 chr4 3950962 3951342 -180337320 + (TGGA)n Simple_repeat Simple_repeat 1 380 0 210 158 0 0 chr4 3951349 3951387 -180337275 + (TTA)n Simple_repeat Simple_repeat 3 40 0 202 310 42 0 chr4 3952790 3952861 -180335801 - MIR3 SINE MIR -21 187 114 448 158 21 0 chr4 3952895 3952990 -180335672 + CT-rich Low_complexity Low_complexity 1 97 0 1245 165 53 102 chr4 3954784 3954944 -180333718 - L1PA15 LINE L1 0 6165 6027 2166 108 0 16 chr4 3954944 3955258 -180333404 - AluSg1 SINE Alu 0 309 1 1245 165 53 102 chr4 3955258 3955419 -180333243 - L1PA15 LINE L1 -138 6027 5860 195 207 12 73 chr4 3955424 3955506 -180333156 + L2 LINE L2 3023 3099 -214 294 363 0 0 chr4 3955520 3955699 -180332963 + C-rich Low_complexity Low_complexity 1 179 0 259 209 15 15 chr4 3955733 3955800 -180332862 - LTR16B LTR ERVL -4 460 394 229 287 15 59 chr4 3956192 3956328 -180332334 + MLT1H LTR MaLR 16 145 -404 1728 152 14 0 chr4 3957357 3957647 -180331015 + AluJb SINE Alu 1 294 -18 601 346 146 14 chr4 3957876 3958364 -180330298 - L1MC4 LINE L1 -272 7770 7219 1027 220 65 17 chr4 3958367 3958795 -180329867 - MLT1D LTR MaLR -4 501 1 255 291 24 31 chr4 3958965 3959092 -180329570 - L1MC4 LINE L1 -1055 6987 6862 449 346 181 25 chr4 3959152 3959683 -180328979 - L1MC4a LINE L1 -1128 6680 6067 202 192 12 52 chr4 3959773 3959945 -180328717 + (TG)n Simple_repeat Simple_repeat 2 166 0 342 176 15 48 chr4 3959965 3960516 -180328146 + (TG)n Simple_repeat Simple_repeat 1 532 0 291 154 21 42 chr4 3960552 3960695 -180327967 + (TG)n Simple_repeat Simple_repeat 1 140 0 238 175 23 41 chr4 3960773 3960944 -180327718 + (TG)n Simple_repeat Simple_repeat 1 168 0 350 164 29 29 chr4 3961020 3961191 -180327471 + (TG)n Simple_repeat Simple_repeat 2 172 0 198 94 19 38 chr4 3961233 3961286 -180327376 + (TG)n Simple_repeat Simple_repeat 1 52 0 375 140 28 39 chr4 3961308 3961487 -180327175 + (TG)n Simple_repeat Simple_repeat 2 178 0 380 197 15 47 chr4 3961516 3961799 -180326863 + (TG)n Simple_repeat Simple_repeat 1 273 0 364 160 38 28 chr4 3961810 3962105 -180326557 + (TG)n Simple_repeat Simple_repeat 1 298 0 449 144 48 12 chr4 3962134 3962301 -180326361 + (TG)n Simple_repeat Simple_repeat 2 174 0 1026 301 73 5 chr4 3962492 3962918 -180325744 - L1MC4a LINE L1 -2058 5750 5296 1669 212 13 18 chr4 3965726 3966108 -180322554 - LTR8 LTR ERV1 0 691 312 230 137 41 14 chr4 3966213 3966286 -180322376 + (TG)n Simple_repeat Simple_repeat 2 76 0 1044 298 73 5 chr4 3966477 3966903 -180321759 - L1MC/D LINE L1 -2058 5750 5296 3521 163 18 74 chr4 3969087 3969819 -180318843 - LTR8 LTR ERV1 0 691 1 398 222 16 29 chr4 3970312 3970489 -180318173 + ORSL DNA AcHobo 41 253 -22 3892 118 11 33 chr4 3970489 3970964 -180317698 + MER4A LTR ERV1 1 462 -138 2146 115 0 3 chr4 3970964 3971268 -180317394 + AluSg1 SINE Alu 7 309 0 3892 118 11 33 chr4 3971268 3971405 -180317257 + MER4A LTR ERV1 462 600 0 398 222 16 29 chr4 3971405 3971428 -180317234 + ORSL DNA AcHobo 253 275 0 194 240 0 20 chr4 3971629 3971679 -180316983 + L2 LINE L2 3168 3216 -56 778 176 4 11 chr4 3971726 3972007 -180316655 + (TGGA)n Simple_repeat Simple_repeat 1 278 0 693 193 0 0 chr4 3972024 3972174 -180316488 + (TGGA)n Simple_repeat Simple_repeat 3 152 0 399 205 0 12 chr4 3974423 3974506 -180314156 + MIR SINE MIR 80 161 -101 820 248 96 0 chr4 3974552 3974782 -180313880 - MER83B LTR ERV1 0 378 127 238 226 32 0 chr4 3975164 3975226 -180313436 - MER83B LTR ERV1 -181 197 134 622 224 14 7 chr4 3975284 3975427 -180313235 - MER83C LTR ERV1 -181 192 49 954 281 16 79 chr4 3975526 3976018 -180312644 - MLT1J LTR MaLR -14 497 37 351 127 48 0 chr4 3976602 3976665 -180311997 - MLT1J LTR MaLR -396 71 6 318 276 264 23 chr4 3976671 3976845 -180311817 - L1ME2 LINE L1 -37 6127 5912 225 61 0 0 chr4 3977081 3977114 -180311548 + AluJo SINE Alu 1 33 -266 2475 84 5 11 chr4 3977115 3977494 -180311168 + MER41B LTR ERV1 1 377 -258 648 167 0 0 chr4 3977496 3977610 -180311052 + MER41B LTR ERV1 510 623 -12 1169 195 0 56 chr4 3977617 3977739 -180310923 + AluJo SINE Alu 22 149 -163 1664 153 29 52 chr4 3977739 3978047 -180310615 + AluJb SINE Alu 1 301 -11 1169 195 0 56 chr4 3978047 3978226 -180310436 + AluJo SINE Alu 149 306 -6 2259 95 7 0 chr4 3978620 3978925 -180309737 + AluSg SINE Alu 1 307 -3 353 165 252 68 chr4 3978994 3979097 -180309565 - FLAM_A SINE Alu -9 124 3 589 251 6 16 chr4 3979195 3979378 -180309284 + HAL1b LINE L1 286 466 -882 1848 114 0 29 chr4 3979428 3979700 -180308962 + AluSx SINE Alu 35 298 -14 540 257 14 7 chr4 3979709 3979857 -180308805 + MLT1C LTR MaLR 34 182 -285 * 647 184 85 85 chr4 3979840 3979859 -180308803 - MSTD LTR MaLR -49 345 328 2179 122 0 0 chr4 3979859 3980170 -180308492 + AluSx SINE Alu 1 311 -1 647 184 85 85 chr4 3980170 3980451 -180308211 - MSTD LTR MaLR -66 328 2 817 200 0 24 chr4 3981763 3981928 -180306734 - FAM SINE Alu -5 44 1 2071 123 6 22 chr4 3981954 3982272 -180306390 - AluSq SINE Alu 0 313 1 346 226 24 0 chr4 3982297 3982381 -180306281 - MIR SINE MIR -100 162 77 203 362 61 43 chr4 3982484 3982647 -180306015 + MIR SINE MIR 16 181 -81 217 255 61 0 chr4 3983068 3983152 -180305510 + MIR SINE MIR 104 192 -60 1608 247 119 17 chr4 3983871 3984306 -180304356 - MER69B DNA AcHobo -1342 1184 668 1579 170 53 3 chr4 3984306 3984589 -180304073 + AluJb SINE Alu 1 297 -15 1608 247 119 17 chr4 3984589 3984756 -180303906 - MER69B DNA AcHobo -1858 668 520 591 258 97 24 chr4 3984905 3985235 -180303427 - MER74B LTR ERVL -56 566 213 875 349 69 4 chr4 3985481 3986003 -180302659 + L1M4 LINE L1 3868 4423 -1723 380 249 35 56 chr4 3986018 3986215 -180302447 + L1M4 LINE L1 4462 4654 -1492 752 178 0 30 chr4 3986244 3986379 -180302283 - FLAM_C SINE Alu 0 133 3 724 114 0 2 chr4 3986423 3986680 -180301982 + AluSx SINE Alu 1 308 -4 353 330 27 27 chr4 3986680 3986865 -180301797 - L2 LINE L2 -18 3295 3111 308 299 46 0 chr4 3987898 3987985 -180300677 + MIR SINE MIR 80 170 -92 1455 210 10 10 chr4 3988383 3988693 -180299969 - AluJo SINE Alu -2 310 1 861 146 14 17 chr4 3989483 3989838 -180298824 + (TCCA)n Simple_repeat Simple_repeat 1 353 0 570 217 23 0 chr4 3989867 3990042 -180298620 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 722 153 28 17 chr4 3990062 3990238 -180298424 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 641 182 20 20 chr4 3990267 3990522 -180298140 + (TCCA)n Simple_repeat Simple_repeat 1 255 0 775 150 24 22 chr4 3990541 3991049 -180297613 + (TCCA)n Simple_repeat Simple_repeat 1 509 0 556 167 53 0 chr4 3991079 3991229 -180297433 + (TCCA)n Simple_repeat Simple_repeat 4 161 0 248 283 160 19 chr4 3991244 3991350 -180297312 - L2 LINE L2 -13 3300 3180 225 307 93 13 chr4 3991341 3991491 -180297171 + L3 LINE CR1 1101 1262 -315 * 238 237 126 47 chr4 3991467 3991657 -180297005 - L2 LINE L2 -2250 1064 860 1295 51 93 0 chr4 3991679 3991894 -180296768 - LTR19A LTR ERV1 -245 241 7 509 274 83 34 chr4 3991898 3992102 -180296560 - L2 LINE L2 -2450 864 651 2322 130 33 41 chr4 3992171 3992720 -180295942 - MER4E LTR ERV1 0 766 51 315 32 143 0 chr4 3992731 3992794 -180295868 + CT-rich Low_complexity Low_complexity 2 73 0 6445 56 9 14 chr4 3992794 3993767 -180294895 + SVA Other Other 1 866 -592 6789 62 16 23 chr4 3993798 3994742 -180293920 + SVA Other Other 450 1386 0 460 134 49 120 chr4 3994775 3994839 -180293823 + LTR49-int LTR ERV1 3141 3191 -3140 2093 132 3 19 chr4 3994839 3995157 -180293505 - AluSq SINE Alu 0 313 1 460 134 49 120 chr4 3995157 3995234 -180293428 + LTR49-int LTR ERV1 3191 3272 -3059 309 200 0 0 chr4 3995294 3995354 -180293308 + LTR49-int LTR ERV1 3275 3334 -2997 446 194 20 0 chr4 3995415 3995513 -180293149 + LTR49-int LTR ERV1 3348 3447 -2884 372 56 42 42 chr4 3995715 3995786 -180292876 - MER4B LTR ERV1 -539 71 1 499 240 187 18 chr4 3995786 3996011 -180292651 - L2 LINE L2 -2993 321 59 516 205 169 62 chr4 3996162 3996469 -180292193 + LTR16A1 LTR ERVL 118 457 0 325 333 77 27 chr4 3997871 3998054 -180290608 - L1ME2 LINE L1 -3 6161 5970 449 206 40 16 chr4 3998689 3998815 -180289847 + L1MEc LINE L1 37 165 -6231 1742 127 20 31 chr4 3998894 3999186 -180289476 + AluJo SINE Alu 6 294 -18 209 169 0 78 chr4 4000367 4000444 -180288218 + G-rich Low_complexity Low_complexity 3 73 0 202 246 31 15 chr4 4000634 4000699 -180287963 - MIR3 SINE MIR -132 76 11 222 317 49 0 chr4 4000892 4000974 -180287688 - MIR3 SINE MIR -46 162 77 218 247 106 12 chr4 4001111 4001196 -180287466 + MIR3 SINE MIR 113 205 -3 2236 81 0 7 chr4 4003187 4003483 -180285179 - AluSx SINE Alu 0 312 19 499 186 224 13 chr4 4007640 4007796 -180280866 - MER46A DNA MER2_type 0 236 48 218 279 25 25 chr4 4008145 4008224 -180280438 + L3 LINE CR1 1403 1481 -96 245 306 93 28 chr4 4008877 4008985 -180279677 - MIR3 SINE MIR -87 121 7 195 129 0 0 chr4 4009666 4009697 -180278965 + (CTCTG)n Simple_repeat Simple_repeat 1 31 0 201 39 0 0 chr4 4010469 4010495 -180278167 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 739 139 17 0 chr4 4010497 4010612 -180278050 - FLAM_C SINE Alu -16 117 1 258 237 0 0 chr4 4013587 4013646 -180275016 + C-rich Low_complexity Low_complexity 1 59 0 216 347 51 0 chr4 4014996 4015094 -180273568 - L2 LINE L2 -6 3307 3205 1889 151 7 3 chr4 4018801 4019099 -180269563 + AluSx SINE Alu 1 299 -13 385 272 33 65 chr4 4020923 4021107 -180267555 - L1ME2 LINE L1 -296 5866 5689 331 275 89 108 chr4 4021486 4021755 -180266907 - L1ME3 LINE L1 -170 5975 5712 645 243 121 32 chr4 4021789 4021908 -180266754 - L1ME3 LINE L1 -1224 4905 4798 1532 148 10 79 chr4 4021908 4022213 -180266449 - AluJb SINE Alu -28 284 1 645 243 121 32 chr4 4022213 4022406 -180266256 - L1ME3 LINE L1 -1331 4798 4565 272 275 94 7 chr4 4023162 4023300 -180265362 - L1ME3 LINE L1 -1638 4491 4342 1094 317 108 25 chr4 4023572 4024046 -180264616 - L1ME3 LINE L1 -2173 3956 3523 2211 113 0 0 chr4 4024046 4024339 -180264323 + AluSx SINE Alu 1 293 -19 1094 317 108 25 chr4 4024339 4024718 -180263944 - L1ME3 LINE L1 -2606 3523 3032 386 284 28 124 chr4 4024743 4024961 -180263701 + L1M4 LINE L1 2645 2841 -3305 388 260 83 22 chr4 4024979 4025116 -180263546 - L1ME2 LINE L1 -742 5428 5301 1587 167 13 36 chr4 4025116 4025421 -180263241 - AluJo SINE Alu -14 298 1 388 260 83 22 chr4 4025421 4025583 -180263079 - L1ME2 LINE L1 -869 5301 5121 2269 81 7 0 chr4 4025681 4025977 -180262685 + AluSq SINE Alu 1 298 -15 1875 136 0 11 chr4 4025997 4026283 -180262379 + AluSx SINE Alu 11 293 -19 1952 125 0 72 chr4 4027377 4027575 -180261087 - AluSx SINE Alu -1 311 145 2171 113 16 7 chr4 4027575 4027885 -180260777 - AluSq SINE Alu 0 313 1 1952 125 0 72 chr4 4027885 4028021 -180260641 - AluSx SINE Alu -167 145 1 314 302 109 73 chr4 4028238 4028596 -180260066 - L1ME3 LINE L1 -5746 373 3 528 265 6 6 chr4 4028611 4028773 -180259889 - L1ME2 LINE L1 -3111 3035 2874 453 195 0 23 chr4 4028792 4028879 -180259783 + AluJ/FLAM SINE Alu 1 85 -227 338 330 128 5 chr4 4037117 4037320 -180251342 - MIR SINE MIR -33 229 2 205 322 0 11 chr4 4037359 4037446 -180251216 + (CAGG)n Simple_repeat Simple_repeat 3 88 0 197 216 78 0 chr4 4038262 4038313 -180250349 + MIR SINE MIR 95 149 -113 421 298 9 31 chr4 4040774 4041005 -180247657 + GA-rich Low_complexity Low_complexity 1 225 0 256 183 12 55 chr4 4041030 4041194 -180247468 + GA-rich Low_complexity Low_complexity 4 160 0 233 193 12 56 chr4 4041261 4041422 -180247240 + GA-rich Low_complexity Low_complexity 3 156 0 244 215 11 43 chr4 4041464 4041650 -180247012 + GA-rich Low_complexity Low_complexity 1 180 0 444 277 24 13 chr4 4041685 4042122 -180246540 + GA-rich Low_complexity Low_complexity 1 441 0 212 204 13 40 chr4 4042163 4042315 -180246347 + GA-rich Low_complexity Low_complexity 1 148 0 210 261 29 14 chr4 4044786 4044855 -180243807 + MIR3 SINE MIR 112 181 -27 253 311 104 0 chr4 4048138 4048244 -180240418 - MIR SINE MIR -63 145 32 333 282 150 0 chr4 4049580 4049793 -180238869 + MLT1H LTR MaLR 76 320 -229 296 239 0 65 chr4 4049836 4049936 -180238726 + MLT1G LTR MaLR 383 508 -80 2068 143 0 0 chr4 4051543 4051851 -180236811 - AluSx SINE Alu -4 308 1 193 248 69 59 chr4 4051996 4052097 -180236565 + L2 LINE L2 2992 3093 -179 277 335 78 48 chr4 4052953 4053183 -180235479 + MLT1C LTR MaLR 230 466 -1 255 251 0 73 chr4 4055861 4056040 -180232622 + (CGGG)n Simple_repeat Simple_repeat 4 169 0 315 187 66 0 chr4 4057175 4057266 -180231396 - MER96B DNA MER1_type? -62 355 259 643 163 0 0 chr4 4057267 4057365 -180231297 - AluSg/x SINE Alu -9 303 206 2105 126 0 0 chr4 4057366 4057660 -180231002 - AluSx SINE Alu -18 294 1 888 122 0 36 chr4 4057663 4057802 -180230860 - AluJb SINE Alu -178 134 1 199 77 26 26 chr4 4058129 4058168 -180230494 + (TCCC)n Simple_repeat Simple_repeat 1 39 0 24 0 0 0 chr4 4058531 4058555 -180230107 + GC_rich Low_complexity Low_complexity 1 24 0 514 291 17 17 chr4 4060204 4060383 -180228279 - MER58A DNA MER1_type 0 224 46 375 260 215 6 chr4 4060944 4061121 -180227541 + MIR SINE MIR 46 259 -3 583 265 133 0 chr4 4061489 4061685 -180226977 - MER58A DNA MER1_type -2 222 1 387 252 169 32 chr4 4061943 4062336 -180226326 + MLT1D LTR MaLR 18 463 -4 587 207 0 13 chr4 4063077 4063318 -180225344 + (CA)n Simple_repeat Simple_repeat 1 237 0 681 220 3 0 chr4 4063353 4063709 -180224953 + (CA)n Simple_repeat Simple_repeat 1 357 0 474 246 0 0 chr4 4063732 4063899 -180224763 + (CA)n Simple_repeat Simple_repeat 1 167 0 404 301 0 0 chr4 4063910 4064201 -180224461 + (CA)n Simple_repeat Simple_repeat 1 291 0 348 326 0 29 chr4 4064236 4064267 -180224395 + (CA)n Simple_repeat Simple_repeat 1 31 -136 1117 206 87 59 chr4 4064267 4064622 -180224040 + MLT1A1 LTR MaLR 1 365 0 348 326 0 29 chr4 4064622 4064762 -180223900 + (CA)n Simple_repeat Simple_repeat 31 167 0 25 31 0 0 chr4 4068716 4068748 -180219914 + GC_rich Low_complexity Low_complexity 1 32 0 42 20 0 0 chr4 4068823 4068872 -180219790 + GC_rich Low_complexity Low_complexity 1 49 0 225 316 25 0 chr4 4071575 4071654 -180217008 + MLT1J2 LTR MaLR 92 172 -278 1453 105 16 47 chr4 4071661 4071919 -180216743 + THE1B LTR MaLR 1 250 -114 11946 67 4 4 chr4 4071919 4073572 -180215090 - HERVL LTR ERVL -391 5263 3610 2694 122 21 0 chr4 4073572 4074000 -180214662 + LTR3b LTR ERVK 1 437 0 26808 56 4 8 chr4 4074008 4075774 -180212888 - HERVL-A1 LTR ERVL -2037 3617 1845 2448 81 0 0 chr4 4075774 4076084 -180212578 + AluY SINE Alu 1 310 -1 26808 56 4 8 chr4 4076084 4077949 -180210713 - HERVL-A1 LTR ERVL -3809 1845 1 3160 102 14 7 chr4 4077949 4078390 -180210272 - MLT2A1 LTR ERVL 0 444 1 678 155 0 49 chr4 4078402 4078544 -180210118 - MLT2A2 LTR ERVL -318 135 1 499 281 91 40 chr4 4078549 4078592 -180210070 + L1M4 LINE L1 3355 3394 -2752 2125 127 0 0 chr4 4078592 4078884 -180209778 - AluSg SINE Alu -16 294 3 499 281 91 40 chr4 4078884 4079214 -180209448 + L1M4 LINE L1 3394 3747 -2399 1534 192 3 79 chr4 4079508 4079744 -180208918 - MLT1B LTR MaLR -1 389 193 3297 166 92 7 chr4 4079744 4080329 -180208333 + LTR24C LTR ERV1 1 635 0 1534 192 3 79 chr4 4080329 4080483 -180208179 - MLT1B LTR MaLR -197 193 29 1493 150 108 0 chr4 4080489 4080749 -180207913 - AluJb SINE Alu -24 288 1 2221 122 0 0 chr4 4081057 4081506 -180207156 + AluSx SINE Alu 2 450 0 222 37 0 0 chr4 4081508 4081535 -180207127 + (GGGA)n Simple_repeat Simple_repeat 4 30 0 347 280 34 25 chr4 4083462 4083580 -180205082 + MIR SINE MIR 61 179 -83 197 132 79 0 chr4 4086395 4086433 -180202229 + MIR SINE MIR 106 146 -62 211 308 62 0 chr4 4086781 4086846 -180201816 + MIR SINE MIR 73 141 -67 212 116 93 0 chr4 4090533 4090576 -180198086 + L2 LINE L2 3003 3049 -223 212 305 11 0 chr4 4091466 4091561 -180197101 + G-rich Low_complexity Low_complexity 5 100 0 185 229 306 19 chr4 4091899 4092056 -180196606 + L2 LINE L2 2867 3068 -245 1900 136 85 25 chr4 4097805 4098159 -180190503 + THE1C LTR MaLR 1 375 0 288 263 11 65 chr4 4098567 4098753 -180189909 + (GGGTG)n Simple_repeat Simple_repeat 5 180 0 2338 101 0 0 chr4 4104429 4104736 -180183926 - AluSx SINE Alu 0 312 6 224 238 20 75 chr4 4105829 4105976 -180182686 + C-rich Low_complexity Low_complexity 3 141 0 272 255 0 81 chr4 4106292 4106453 -180182209 + C-rich Low_complexity Low_complexity 2 149 0 323 280 0 50 chr4 4106473 4106655 -180182007 + C-rich Low_complexity Low_complexity 3 175 0 215 324 34 34 chr4 4107828 4107976 -180180686 - MIR SINE MIR -80 182 35 456 254 56 8 chr4 4110563 4110689 -180177973 + MLT1H LTR MaLR 2 133 -416 193 313 45 0 chr4 4112038 4112105 -180176557 + L2 LINE L2 3184 3253 -19 200 132 57 132 chr4 4112523 4112576 -180176086 + MER5B DNA MER1_type 59 107 -71 1528 148 9 50 chr4 4112589 4112907 -180175755 - AluJo SINE Alu -2 310 6 1452 127 51 82 chr4 4112926 4113094 -180175568 - AluSx SINE Alu 0 310 154 2284 97 0 0 chr4 4113094 4113392 -180175270 - AluSx SINE Alu -14 298 1 1452 127 51 82 chr4 4113392 4113542 -180175120 - AluSx SINE Alu -156 154 1 300 205 64 26 chr4 4114513 4114591 -180174071 + L1ME4a LINE L1 6035 6115 -6 239 247 49 12 chr4 4118407 4118488 -180170174 - L2 LINE L2 -3 3310 3227 240 318 87 8 chr4 4121188 4121314 -180167348 + L1P LINE L1 4956 5091 -1055 858 144 81 58 chr4 4122003 4122177 -180166485 + AluJo SINE Alu 50 227 -85 259 313 55 8 chr4 4125768 4125896 -180162766 - MER58A DNA MER1_type 0 136 3 1154 241 148 66 chr4 4126452 4127221 -180161441 - L1MC4 LINE L1 0 8042 7129 1600 276 122 21 chr4 4127282 4127913 -180160749 - L1MC4 LINE L1 -965 7077 6383 704 245 107 28 chr4 4128169 4128422 -180160240 - MER115 DNA AcHobo -11 682 410 242 333 72 9 chr4 4128802 4128913 -180159749 - MIR3 SINE MIR -48 160 43 25 0 0 0 chr4 4130137 4130162 -180158500 + AT_rich Low_complexity Low_complexity 1 25 0 488 275 85 68 chr4 4131305 4131541 -180157121 - L1M4 LINE L1 -1897 4249 4010 324 194 6 56 chr4 4131610 4131770 -180156892 + (TAA)n Simple_repeat Simple_repeat 1 152 0 234 310 0 0 chr4 4131834 4131905 -180156757 - L1M4 LINE L1 -2213 3933 3863 265 264 0 35 chr4 4131917 4132004 -180156658 + L2 LINE L2 3227 3310 -3 367 351 49 9 chr4 4132027 4132252 -180156410 - L1M4 LINE L1 -2309 3837 3604 640 297 100 20 chr4 4132328 4132628 -180156034 + MLT1I LTR MaLR 86 409 0 797 130 73 0 chr4 4132895 4133018 -180155644 - AluJb SINE Alu -179 133 2 542 342 59 5 chr4 4133064 4133661 -180155001 - L1M4 LINE L1 -2969 3177 2549 348 264 88 83 chr4 4133747 4133879 -180154783 - L1M4 LINE L1 -3757 2389 2254 604 192 14 110 chr4 4133879 4134025 -180154637 - FLAM_A SINE Alu 0 133 2 348 264 88 83 chr4 4134025 4134108 -180154554 - L1M4 LINE L1 -3892 2254 2173 637 281 130 34 chr4 4134222 4134460 -180154202 - MIR SINE MIR 0 262 2 862 270 64 19 chr4 4134523 4134834 -180153828 + L2 LINE L2 2151 2475 -839 184 241 76 0 chr4 4134875 4134954 -180153708 + L2 LINE L2 2028 2112 -1202 1765 280 95 30 chr4 4135586 4136181 -180152481 + L1ME3A LINE L1 4628 5183 -987 1401 192 74 62 chr4 4136181 4136520 -180152142 - MER2 DNA MER2_type 0 344 2 1765 280 95 30 chr4 4136520 4137137 -180151525 + L1ME3A LINE L1 5183 5952 -218 1700 139 36 53 chr4 4137137 4137318 -180151344 - AluSx SINE Alu -14 298 122 204 111 0 0 chr4 4137318 4137354 -180151308 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 1700 139 36 53 chr4 4137354 4137475 -180151187 - AluSx SINE Alu -190 122 1 1765 280 95 30 chr4 4137475 4137704 -180150958 + L1ME3A LINE L1 5952 6165 -5 2089 139 0 0 chr4 4137899 4138202 -180150460 + AluSx SINE Alu 1 303 -9 616 288 106 12 chr4 4138710 4139116 -180149546 + L1MEd LINE L1 110 553 -5843 552 275 61 77 chr4 4139193 4139360 -180149302 + L1MEc LINE L1 790 958 -5438 2040 108 14 0 chr4 4139360 4139655 -180149007 - AluSx SINE Alu -13 299 1 552 275 61 77 chr4 4139655 4139981 -180148681 + L1MEc LINE L1 958 1275 -5121 315 223 39 10 chr4 4139991 4140094 -180148568 + L1MEc LINE L1 1355 1460 -4936 295 273 136 9 chr4 4140408 4140518 -180148144 - L1ME3A LINE L1 -3 6167 6044 232 336 18 26 chr4 4141611 4141724 -180146938 - MIR SINE MIR -73 135 24 272 289 90 19 chr4 4142956 4143112 -180145550 - L3 LINE CR1 -148 1429 1263 213 148 0 49 chr4 4144101 4144162 -180144500 + (TCCC)n Simple_repeat Simple_repeat 1 58 0 2131 112 3 0 chr4 4147914 4148210 -180140452 + AluSx SINE Alu 1 297 -15 1503 180 25 3 chr4 4148755 4149038 -180139624 - AluJo SINE Alu -19 293 5 422 309 65 10 chr4 4149287 4149722 -180138940 + L1MEd LINE L1 695 1174 -5031 2426 114 44 6 chr4 4150595 4150956 -180137706 + THE1C LTR MaLR 1 375 0 10469 120 39 6 chr4 4150956 4152485 -180136177 + THE1C-int LTR MaLR 1 1580 0 2520 129 27 3 chr4 4152486 4152851 -180135811 + THE1C LTR MaLR 2 375 0 4074 165 93 25 chr4 4152870 4153321 -180135341 - L1MA9 LINE L1 -46 6266 5847 279 0 0 0 chr4 4153321 4153352 -180135310 + (CA)n Simple_repeat Simple_repeat 2 32 0 4074 165 93 25 chr4 4153352 4154135 -180134527 - L1MA9 LINE L1 -465 5847 4950 1337 146 5 0 chr4 4154987 4155193 -180133469 + AluJ SINE Alu 1 207 -105 694 108 0 0 chr4 4155254 4155347 -180133315 + AluJ SINE Alu 209 301 -11 231 339 28 18 chr4 4155609 4155718 -180132944 - MER112 DNA MER1_type 0 260 151 270 0 0 0 chr4 4156064 4156094 -180132568 + (TG)n Simple_repeat Simple_repeat 2 31 0 186 188 0 38 chr4 4156564 4156644 -180132018 + (CTGGGG)n Simple_repeat Simple_repeat 3 79 0 421 297 189 26 chr4 4157092 4157435 -180131227 - L2 LINE L2 -670 2644 2246 315 187 66 0 chr4 4260771 4260862 -180027800 - MER96B DNA MER1_type? -62 355 259 643 163 0 0 chr4 4260863 4260961 -180027701 - AluSg/x SINE Alu -9 303 206 2122 122 0 0 chr4 4260962 4261256 -180027406 - AluSx SINE Alu -18 294 1 888 122 0 36 chr4 4261259 4261398 -180027264 - AluJb SINE Alu -178 134 1 199 77 26 26 chr4 4261725 4261764 -180026898 + (TCCC)n Simple_repeat Simple_repeat 1 39 0 24 0 0 0 chr4 4262127 4262151 -180026511 + GC_rich Low_complexity Low_complexity 1 24 0 502 297 16 16 chr4 4263678 4263863 -180024799 - MER58A DNA MER1_type 0 224 40 357 273 209 5 chr4 4264411 4264598 -180024064 + MIR SINE MIR 35 259 -3 569 270 133 0 chr4 4264966 4265162 -180023500 - MER58A DNA MER1_type -2 222 1 379 261 161 33 chr4 4265420 4265819 -180022843 + MLT1C LTR MaLR 18 463 -4 663 245 3 0 chr4 4266560 4267706 -180020956 + (CA)n Simple_repeat Simple_repeat 1 1149 0 320 337 0 29 chr4 4267741 4267772 -180020890 + (CA)n Simple_repeat Simple_repeat 1 31 -136 1116 206 87 59 chr4 4267772 4268127 -180020535 + MLT1A1 LTR MaLR 1 365 0 320 337 0 29 chr4 4268127 4268267 -180020395 + (CA)n Simple_repeat Simple_repeat 31 167 0 8364 147 32 12 chr4 4372230 4373602 -179915060 + MER52A LTR ERV1 375 1755 0 188 250 132 13 chr4 4373834 4373910 -179914752 + MIR SINE MIR 161 245 -17 221 329 12 0 chr4 4374146 4374231 -179914431 - L2 LINE L2 -2 3270 3185 1348 178 15 118 chr4 4374456 4374633 -179914029 - AluJb SINE Alu -5 297 103 2216 64 4 4 chr4 4374633 4374914 -179913748 - AluSp SINE Alu -32 281 1 1942 116 0 47 chr4 4374918 4375100 -179913562 - AluSx SINE Alu -7 305 143 2182 88 17 3 chr4 4375100 4375397 -179913265 - AluY SINE Alu -10 301 1 1942 116 0 47 chr4 4375397 4375534 -179913128 - AluSx SINE Alu -169 143 1 1348 178 15 118 chr4 4375534 4375682 -179912980 - AluJb SINE Alu -202 100 1 352 248 9 28 chr4 4376325 4376434 -179912228 + L1 LINE L1 5174 5280 -866 1055 265 41 32 chr4 4376457 4376869 -179911793 + MLT1J1 LTR MaLR 68 446 0 2139 116 6 0 chr4 4377406 4377717 -179910945 + AluSp SINE Alu 1 313 0 513 133 20 10 chr4 4377806 4377904 -179910758 - LTR54 LTR ERV1 -2 508 410 1136 171 46 0 chr4 4377904 4378121 -179910541 + AluJo SINE Alu 86 312 0 216 158 0 0 chr4 4378130 4378168 -179910494 + GA-rich Low_complexity Low_complexity 1 38 0 1399 139 62 9 chr4 4378168 4378527 -179910135 - LTR54 LTR ERV1 -94 413 1 2260 77 0 0 chr4 4379036 4379322 -179909340 - AluSc SINE Alu -23 286 1 370 209 97 75 chr4 4379484 4379553 -179909109 + MLT1J2 LTR MaLR 59 125 -325 612 150 18 9 chr4 4379553 4379666 -179908996 + L1PB2 LINE L1 6037 6150 -1 370 209 97 75 chr4 4379666 4379730 -179908932 + MLT1J2 LTR MaLR 125 195 -255 370 233 125 33 chr4 4379749 4379869 -179908793 + L2 LINE L2 3141 3271 -1 218 287 32 43 chr4 4379867 4379961 -179908701 - MIR SINE MIR -157 105 13 * 192 40 0 0 chr4 4379961 4379986 -179908676 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 756 231 84 48 chr4 4379986 4380199 -179908463 - L2 LINE L2 -13 3300 3075 763 167 24 0 chr4 4380199 4380325 -179908337 + FLAM_A SINE Alu 1 129 -4 756 231 84 48 chr4 4380325 4380362 -179908300 - L2 LINE L2 -238 3075 3041 1225 303 206 7 chr4 4380395 4381240 -179907422 - L2 LINE L2 -408 2906 1894 1850 158 0 0 chr4 4381310 4381601 -179907061 + AluJb SINE Alu 1 291 -21 2133 186 34 36 chr4 4382267 4382735 -179905927 + MLT1C LTR MaLR 1 467 0 265 232 0 18 chr4 4382857 4382913 -179905749 - L2 LINE L2 0 3313 3259 1821 87 0 4 chr4 4383375 4383617 -179905045 + AluY SINE Alu 1 241 -70 2205 82 0 0 chr4 4384154 4384472 -179904190 + AluSp SINE Alu 1 318 0 2201 90 7 3 chr4 4385238 4385538 -179903124 - AluSg SINE Alu -9 301 1 2056 98 7 3 chr4 4385862 4386159 -179902503 - AluSx SINE Alu -14 298 1 569 316 14 28 chr4 4386160 4386375 -179902287 - MIR SINE MIR -4 258 47 1009 170 0 0 chr4 4386644 4386815 -179901847 - FAM SINE Alu -5 44 1 641 240 112 11 chr4 4387256 4387435 -179901227 + MIR SINE MIR 3 199 -63 930 194 0 21 chr4 4387451 4387642 -179901020 - AluJo SINE Alu -2 310 124 1683 153 50 0 chr4 4387901 4388183 -179900479 - AluJb SINE Alu -16 296 1 2211 91 3 3 chr4 4388285 4388583 -179900079 - AluSp SINE Alu -15 298 1 195 287 96 11 chr4 4388614 4388708 -179899954 - MIR3 SINE MIR -47 161 60 1823 114 13 24 chr4 4388842 4389160 -179899502 - AluSx SINE Alu 0 312 1 2639 125 13 47 chr4 4389797 4390245 -179898417 + Tigger2a DNA MER2_type 1 433 -1 1872 76 76 8 chr4 4390662 4390926 -179897736 + AluSq SINE Alu 1 282 -31 192 40 0 0 chr4 4390926 4390951 -179897711 + (CAAAC)n Simple_repeat Simple_repeat 5 29 0 2679 147 39 30 chr4 4390963 4391191 -179897471 + L1MB2 LINE L1 5655 5879 -292 2007 121 3 3 chr4 4391191 4391489 -179897173 + AluSx SINE Alu 1 298 -14 2679 147 39 30 chr4 4391489 4391769 -179896893 + L1MB2 LINE L1 5879 6168 -3 610 167 0 0 chr4 4391868 4391970 -179896692 - AluJb SINE Alu -76 236 135 1030 127 6 0 chr4 4391971 4392129 -179896533 - AluSg/x SINE Alu -23 287 129 976 195 0 61 chr4 4392128 4392359 -179896303 - AluJb SINE Alu -95 217 1 * 438 277 43 14 chr4 4392521 4392662 -179896000 - L1ME LINE L1 -460 5661 5517 2178 88 3 3 chr4 4393014 4393311 -179895351 + AluSq SINE Alu 1 297 -16 273 57 0 0 chr4 4393325 4393360 -179895302 + (TG)n Simple_repeat Simple_repeat 2 36 0 248 221 47 0 chr4 4393382 4393468 -179895194 - L1MC4 LINE L1 -1339 6703 6614 380 264 6 10 chr4 4393478 4393574 -179895088 - L1MC4 LINE L1 -1339 6983 1995 2228 96 6 16 chr4 4393813 4394125 -179894537 + AluSc SINE Alu 1 309 0 181 273 23 0 chr4 4394184 4394228 -179894434 - L2 LINE L2 -46 3267 3223 21 36 0 0 chr4 4394368 4394396 -179894266 + AT_rich Low_complexity Low_complexity 1 28 0 5442 183 25 58 chr4 4394690 4395208 -179893454 - L1ME LINE L1 -830 5316 4782 1704 190 20 42 chr4 4395208 4395613 -179893049 + MSTD LTR MaLR 1 396 0 5442 183 25 58 chr4 4395613 4396304 -179892358 - L1ME LINE L1 -1364 4782 4069 2015 117 7 3 chr4 4396304 4396603 -179892059 - AluSx SINE Alu -10 302 3 5442 183 25 58 chr4 4396603 4396749 -179891913 - L1ME LINE L1 -2077 4069 4055 2116 128 0 0 chr4 4396749 4397053 -179891609 - AluSg SINE Alu -6 304 1 5442 183 25 58 chr4 4397053 4397119 -179891543 - L1ME LINE L1 -2091 4055 3988 315 232 192 40 chr4 4397154 4397279 -179891383 + MSTC LTR MaLR 1 144 -284 707 225 16 16 chr4 4397283 4397470 -179891192 - L1 LINE L1 -2187 3959 3773 523 141 0 0 chr4 4397664 4397742 -179890920 - AluJ/FLAM SINE Alu -233 79 2 600 200 140 93 chr4 4398016 4398112 -179890550 + MSTD LTR MaLR 1 91 -305 2140 105 0 0 chr4 4398112 4398408 -179890254 - AluSx SINE Alu -16 296 1 600 200 140 93 chr4 4398408 4398585 -179890077 + MSTD LTR MaLR 91 282 -114 979 249 50 80 chr4 4398602 4398993 -179889669 + LTR56 LTR ERV1 9 381 -56 1912 120 17 40 chr4 4398993 4399294 -179889368 - AluSx SINE Alu -18 294 1 979 249 50 80 chr4 4399294 4399350 -179889312 + LTR56 LTR ERV1 381 437 0 483 142 14 177 chr4 4399350 4399426 -179889236 + MSTD LTR MaLR 281 326 -70 3497 94 2 0 chr4 4399426 4399902 -179888760 + L1PA13 LINE L1 5684 6160 -3 483 142 14 177 chr4 4399902 4399964 -179888698 + MSTD LTR MaLR 326 396 0 1901 161 0 0 chr4 4400170 4400480 -179888182 + AluSx SINE Alu 1 310 -2 699 215 17 29 chr4 4400817 4400978 -179887684 + MIR SINE MIR 52 212 -50 2054 132 3 0 chr4 4400978 4401289 -179887373 - AluSx SINE Alu 0 312 1 1583 197 0 10 chr4 4401693 4401982 -179886680 - AluJb SINE Alu -26 286 1 1684 155 10 17 chr4 4401986 4402283 -179886379 - AluJo SINE Alu -17 295 1 900 149 0 8 chr4 4402503 4402637 -179886025 + FLAM_A SINE Alu 1 133 0 1979 130 0 3 chr4 4402869 4403169 -179885493 + AluSx SINE Alu 1 299 -13 1629 193 15 46 chr4 4403251 4403644 -179885018 + MLT2C1 LTR ERVL 17 397 0 189 287 96 32 chr4 4403657 4403751 -179884911 - L2 LINE L2 -18 3254 3155 2281 105 0 0 chr4 4404124 4404437 -179884225 + AluSq SINE Alu 1 313 0 23 68 0 0 chr4 4404551 4404595 -179884067 + AT_rich Low_complexity Low_complexity 1 44 0 898 131 0 115 chr4 4405081 4405272 -179883390 + AluSg/x SINE Alu 136 304 -8 2092 76 14 7 chr4 4405487 4405778 -179882884 - AluSc SINE Alu -16 293 1 180 0 0 0 chr4 4406085 4406105 -179882557 + (TTG)n Simple_repeat Simple_repeat 2 21 0 595 118 20 29 chr4 4406107 4406209 -179882453 - AluSg/x SINE Alu -27 285 185 1569 163 62 14 chr4 4406209 4406576 -179882086 + L1M3 LINE L1 5241 5624 -550 2192 146 0 0 chr4 4406579 4406887 -179881775 - AluSx SINE Alu -4 308 1 1053 97 8 0 chr4 4406888 4407022 -179881640 - AluSq/x SINE Alu -178 135 1 842 189 12 0 chr4 4407022 4407191 -179881471 + L1M3 LINE L1 5625 5795 -388 248 141 188 0 chr4 4407196 4407260 -179881402 + L1MB3 LINE L1 6101 6176 -7 2349 148 69 29 chr4 4407264 4407744 -179880918 + L1MB8 LINE L1 5679 6177 -1 2392 85 3 3 chr4 4408027 4408332 -179880330 + AluSc SINE Alu 1 305 -4 373 336 118 0 chr4 4408403 4408632 -179880030 + L1MC/D LINE L1 5386 5641 -2167 349 370 81 6 chr4 4408649 4408674 -179879988 - L1MC4a LINE L1 -1901 5907 5885 2244 79 48 3 chr4 4408674 4408965 -179879697 - AluY SINE Alu -7 304 1 349 370 81 6 chr4 4408965 4409112 -179879550 - L1MC4a LINE L1 -1923 5885 5722 720 200 8 0 chr4 4409132 4409257 -179879405 - FLAM_A SINE Alu -7 126 1 2130 80 42 7 chr4 4409264 4409552 -179879110 - AluY SINE Alu -13 298 1 920 151 0 0 chr4 4409739 4409865 -179878797 + FLAM_C SINE Alu 4 129 -14 766 246 111 63 chr4 4410465 4410578 -179878084 - L2 LINE L2 -4 3309 3203 1985 121 48 58 chr4 4410578 4410957 -179877705 + THE1C LTR MaLR 1 375 0 766 246 111 63 chr4 4410957 4411177 -179877485 - L2 LINE L2 -110 3203 2960 231 281 112 0 chr4 4411664 4411753 -179876909 + L2 LINE L2 2315 2413 -901 222 333 16 0 chr4 4411754 4411817 -179876845 - L2 LINE L2 0 3272 3209 669 178 60 19 chr4 4412440 4412628 -179876034 + MER52A LTR ERV1 217 538 -740 976 214 25 79 chr4 4412645 4412963 -179875699 + AluJo SINE Alu 2 302 0 391 391 41 10 chr4 4413019 4413216 -179875446 + L1MEc LINE L1 199 401 -5995 334 243 37 19 chr4 4413321 4413428 -179875234 - L1MC4a LINE L1 -1870 5938 5830 1766 170 3 10 chr4 4414223 4414512 -179874150 + AluJo SINE Alu 5 291 -21 368 188 0 0 chr4 4415167 4415231 -179873431 + FLAM_A SINE Alu 1 64 -68 234 294 165 9 chr4 4415242 4415351 -179873311 - L2 LINE L2 -2 3270 3145 1314 147 20 12 chr4 4416147 4416399 -179872263 + MER2 DNA MER2_type 35 288 -57 352 239 14 0 chr4 4416434 4416505 -179872157 + MER2 DNA MER2_type 273 344 -1 2010 108 52 7 chr4 4416902 4417189 -179871473 + AluSx SINE Alu 1 300 -12 731 261 51 4 chr4 4417920 4418154 -179870508 - L1MC4a LINE L1 -619 5545 5301 204 40 0 0 chr4 4418158 4418183 -179870479 + (CA)n Simple_repeat Simple_repeat 1 25 0 1492 242 98 68 chr4 4418188 4418311 -179870351 - L1MC4a LINE L1 -1538 4608 4490 2341 100 0 3 chr4 4418311 4418612 -179870050 - AluSx SINE Alu -12 300 1 1492 242 98 68 chr4 4418612 4418694 -179869968 - L1MC4a LINE L1 -1656 4490 4412 815 160 0 0 chr4 4418694 4418819 -179869843 - FLAM_A SINE Alu -7 126 2 1492 242 98 68 chr4 4418819 4418997 -179869665 - L1MC4a LINE L1 -1734 4412 4241 853 132 0 29 chr4 4418997 4419133 -179869529 + FLAM_C SINE Alu 1 132 -1 1492 242 98 68 chr4 4419133 4419550 -179869112 - L1MC4a LINE L1 -1905 4241 3782 23 0 0 0 chr4 4419704 4419727 -179868935 + AT_rich Low_complexity Low_complexity 1 23 0 351 322 136 12 chr4 4419983 4420225 -179868437 - L2 LINE L2 -482 2832 2561 1131 166 6 0 chr4 4420481 4420656 -179868006 - AluJb SINE Alu -3 309 134 2089 82 36 52 chr4 4420656 4420961 -179867701 - AluSg SINE Alu -10 300 1 847 147 0 0 chr4 4421439 4421555 -179867107 + FLAM_C SINE Alu 2 117 -16 2262 95 0 14 chr4 4421560 4421854 -179866808 - AluSx SINE Alu -22 290 1 320 272 44 33 chr4 4421989 4422169 -179866493 - L1MC5 LINE L1 -48 7913 7732 251 172 198 43 chr4 4422175 4422291 -179866371 - L1ME4a LINE L1 -6 6115 5982 257 274 174 26 chr4 4422612 4422802 -179865860 - MIR SINE MIR -33 229 12 28 29 0 0 chr4 4423261 4423296 -179865366 + AT_rich Low_complexity Low_complexity 1 35 0 862 128 0 0 chr4 4423296 4423413 -179865249 - FLAM_C SINE Alu -15 118 2 5658 111 72 42 chr4 4423642 4424505 -179864157 - LTR13 LTR ERVK -12 995 97 2514 46 0 0 chr4 4424505 4424824 -179863838 - AluY SINE Alu 0 319 1 5658 111 72 42 chr4 4424824 4424925 -179863737 - LTR13 LTR ERVK -910 97 1 748 86 23 31 chr4 4424966 4425094 -179863568 + LTR54B LTR ERV1 5 131 -367 1207 72 63 31 chr4 4425094 4425306 -179863356 + MER57B-int LTR ERV1 7279 7537 0 2900 118 18 18 chr4 4425306 4425740 -179862922 + MER57B LTR ERV1 1 434 0 1867 224 54 17 chr4 4425854 4426372 -179862290 + MER72 LTR ERV1 12 548 -174 3951 159 99 38 chr4 4426382 4427193 -179861469 - MER21B LTR ERV1 -1 862 3 1808 119 79 0 chr4 4427227 4427504 -179861158 + AluSx SINE Alu 1 299 -13 735 108 0 0 chr4 4427651 4427753 -179860909 - U6 snRNA snRNA -5 102 1 4312 117 11 17 chr4 4428093 4428545 -179860117 - MER41B LTR ERV1 0 635 187 1819 127 92 0 chr4 4428545 4428829 -179859833 - AluSx SINE Alu -2 310 1 4312 117 11 17 chr4 4428829 4429015 -179859647 - MER41B LTR ERV1 -448 187 1 285 343 66 15 chr4 4429297 4429434 -179859228 - MIR SINE MIR -11 251 108 2109 123 0 0 chr4 4431415 4431726 -179856936 - AluSx SINE Alu 0 311 1 2446 109 0 0 chr4 4432158 4432471 -179856191 - AluSq SINE Alu 0 313 1 2377 100 0 0 chr4 4432652 4432953 -179855709 - AluSx SINE Alu -11 301 1 2374 90 0 10 chr4 4433953 4434254 -179854408 - AluSg SINE Alu -12 298 1 276 53 0 0 chr4 4434280 4434318 -179854344 + (CA)n Simple_repeat Simple_repeat 2 39 0 525 32 0 0 chr4 4434785 4434848 -179853814 + (CA)n Simple_repeat Simple_repeat 1 63 0 971 190 28 6 chr4 4435772 4435951 -179852711 + AluJo SINE Alu 1 183 -129 779 122 7 58 chr4 4436171 4436310 -179852352 + FLAM_C SINE Alu 2 133 0 2336 65 41 0 chr4 4436627 4436917 -179851745 - AluY SINE Alu -9 302 1 377 202 131 20 chr4 4437470 4437569 -179851093 + MER58B DNA MER1_type 232 341 0 266 241 167 19 chr4 4437857 4437965 -179850697 + L2 LINE L2 3142 3265 -7 2146 114 3 25 chr4 4438008 4438324 -179850338 + AluSc SINE Alu 1 309 0 1491 185 18 78 chr4 4438433 4438654 -179850008 + MLT1A1 LTR MaLR 5 195 -170 775 174 0 36 chr4 4438654 4438792 -179849870 - FLAM_C SINE Alu 0 133 1 1491 185 18 78 chr4 4438792 4438954 -179849708 + MLT1A1 LTR MaLR 195 365 0 471 236 19 0 chr4 4439118 4439224 -179849438 - MIR SINE MIR -48 214 107 471 76 0 0 chr4 4439446 4439512 -179849150 - AluSc SINE Alu -6 303 238 1314 106 22 0 chr4 4439513 4439693 -179848969 - AluSq SINE Alu -129 184 1 722 284 222 16 chr4 4440044 4440801 -179847861 + L2 LINE L2 719 1631 -1683 348 257 119 95 chr4 4440831 4441201 -179847461 + L2 LINE L2 2522 2900 -414 528 173 29 29 chr4 4441359 4441463 -179847199 + L2 LINE L2 3210 3313 0 253 191 0 0 chr4 4442781 4442823 -179845839 + L1MB7 LINE L1 5834 5875 -293 2226 125 0 0 chr4 4442823 4443120 -179845542 + AluSx SINE Alu 1 297 -15 698 177 0 0 chr4 4443120 4443250 -179845412 + L1MB7 LINE L1 6054 6183 -1 376 281 70 12 chr4 4443579 4443750 -179844912 + MIR3 SINE MIR 9 189 -19 1699 172 37 24 chr4 4444549 4444846 -179843816 + AluJb SINE Alu 1 301 -11 402 283 9 44 chr4 4444895 4445008 -179843654 + L2 LINE L2 3164 3272 0 297 232 43 0 chr4 4445184 4445253 -179843409 + MIR SINE MIR 8 79 -183 1003 105 0 0 chr4 4445315 4445448 -179843214 - FLAM_C SINE Alu 0 133 1 1078 223 92 4 chr4 4445549 4445822 -179842840 + L1MC4a LINE L1 5411 5707 -2101 489 290 103 51 chr4 4445915 4446205 -179842457 + L1MC4a LINE L1 5824 6098 -1710 2604 36 3 10 chr4 4446205 4446508 -179842154 + AluY SINE Alu 1 301 -10 489 290 103 51 chr4 4446508 4446606 -179842056 + L1MC4a LINE L1 6098 6190 -1618 2364 120 0 0 chr4 4446606 4446907 -179841755 - AluSx SINE Alu -11 301 1 489 290 103 51 chr4 4446907 4446998 -179841664 + L1MC4a LINE L1 6190 6372 -1436 180 0 0 0 chr4 4447002 4447022 -179841640 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2223 100 7 0 chr4 4447024 4447305 -179841357 - AluSx SINE Alu -16 296 14 712 215 130 14 chr4 4447312 4447535 -179841127 + L1MB3 LINE L1 5934 6182 -1 2283 91 40 0 chr4 4447543 4447840 -179840822 + AluY SINE Alu 1 309 -2 2205 94 49 0 chr4 4447882 4448170 -179840492 + AluSp SINE Alu 3 304 -9 181 381 48 0 chr4 4449145 4449229 -179839433 - L2 LINE L2 0 3272 3185 1661 202 10 10 chr4 4449321 4449628 -179839034 - AluJo SINE Alu -5 307 1 348 290 65 0 chr4 4449635 4449742 -179838920 - MIR SINE MIR -117 145 32 396 294 28 28 chr4 4449748 4449925 -179838737 + MER104 DNA MER2_type 1 177 -3 2098 111 24 0 chr4 4450584 4450881 -179837781 + AluSx SINE Alu 1 304 -8 2429 93 0 3 chr4 4450974 4451285 -179837377 - AluY SINE Alu -1 310 1 2226 122 0 3 chr4 4451314 4451610 -179837052 - AluSx SINE Alu -17 295 1 845 147 0 0 chr4 4451687 4451823 -179836839 + AluSg/x SINE Alu 174 309 -1 2458 149 99 62 chr4 4451824 4452388 -179836274 - L1MD2 LINE L1 -291 6068 5484 459 0 0 0 chr4 4452428 4452479 -179836183 + (TG)n Simple_repeat Simple_repeat 2 52 0 1549 170 24 35 chr4 4452482 4452771 -179835891 - AluJo SINE Alu -26 286 1 476 267 182 15 chr4 4452822 4453099 -179835563 + L2 LINE L2 2784 3104 -209 282 304 236 20 chr4 4453344 4453492 -179835170 - MER5A DNA MER1_type 0 189 10 379 296 127 55 chr4 4453845 4454098 -179834564 + L1ME4a LINE L1 5840 6110 -11 2476 74 6 3 chr4 4454152 4454463 -179834199 + AluSp SINE Alu 1 312 -1 1223 183 70 4 chr4 4454518 4454791 -179833871 + MER58B DNA MER1_type 43 333 -8 3621 188 37 1 chr4 4454791 4455584 -179833078 + L1M4 LINE L1 4517 5337 -809 2290 126 0 0 chr4 4455615 4455916 -179832746 + AluSq SINE Alu 1 301 -12 1049 270 77 38 chr4 4456086 4456564 -179832098 + L2 LINE L2 2503 3012 -301 922 187 5 20 chr4 4456564 4456762 -179831900 + FRAM SINE Alu 1 170 -6 203 191 24 0 chr4 4456767 4456809 -179831853 + L2 LINE L2 3032 3074 -239 1679 154 0 45 chr4 4456814 4456959 -179831703 + AluSx SINE Alu 1 128 -184 2282 67 0 54 chr4 4456959 4457274 -179831388 + AluY SINE Alu 1 298 -13 1679 154 0 45 chr4 4457274 4457414 -179831248 + AluSx SINE Alu 128 273 -39 224 59 29 0 chr4 4457421 4457455 -179831207 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 426 98 16 0 chr4 4457467 4457528 -179831134 + U7 snRNA snRNA 2 63 0 23 0 0 0 chr4 4457531 4457554 -179831108 + AT_rich Low_complexity Low_complexity 1 23 0 705 233 93 23 chr4 4457570 4457785 -179830877 + L2 LINE L2 3084 3313 0 21 57 0 0 chr4 4458204 4458239 -179830423 + AT_rich Low_complexity Low_complexity 1 35 0 2116 119 0 0 chr4 4458292 4458578 -179830084 + AluSg SINE Alu 1 286 -24 2132 109 0 0 chr4 4458824 4459109 -179829553 - AluSx SINE Alu -22 290 6 183 100 0 0 chr4 4460956 4460986 -179827676 + (CGGGGG)n Simple_repeat Simple_repeat 4 33 0 261 198 0 0 chr4 4460988 4461069 -179827593 + (CGG)n Simple_repeat Simple_repeat 3 83 0 528 16 0 0 chr4 4461069 4461130 -179827532 + (CTG)n Simple_repeat Simple_repeat 1 61 0 28 61 0 0 chr4 4461354 4461403 -179827259 + GC_rich Low_complexity Low_complexity 1 49 0 377 275 0 53 chr4 4461552 4461741 -179826921 + (CGGGG)n Simple_repeat Simple_repeat 1 179 0 197 62 0 31 chr4 4461752 4461784 -179826878 + (CGGGG)n Simple_repeat Simple_repeat 4 34 0 194 209 0 31 chr4 4461819 4461948 -179826714 + (CGGGG)n Simple_repeat Simple_repeat 5 129 0 784 144 24 8 chr4 4462945 4463070 -179825592 + FRAM SINE Alu 28 154 -22 2186 98 10 3 chr4 4463084 4463380 -179825282 + AluSx SINE Alu 6 303 -9 1319 247 122 19 chr4 4463454 4463931 -179824731 + MLT1E LTR MaLR 8 533 -60 2241 156 48 0 chr4 4464021 4464393 -179824269 - MLT1B LTR MaLR 0 390 1 908 258 124 34 chr4 4464404 4464846 -179823816 + MLT1J LTR MaLR 17 498 -13 2220 102 3 0 chr4 4465422 4465726 -179822936 + AluSx SINE Alu 6 310 -2 344 245 39 10 chr4 4465749 4465851 -179822811 + L1ME4a LINE L1 5998 6102 -19 315 347 47 40 chr4 4466380 4466530 -179822132 - L1MEd LINE L1 -3950 2179 2029 1954 128 0 33 chr4 4466551 4466857 -179821805 + AluSx SINE Alu 1 296 -16 662 323 72 32 chr4 4466876 4467053 -179821609 - L1MEd LINE L1 -4320 1990 1822 2023 146 0 0 chr4 4467053 4467354 -179821308 + AluSx SINE Alu 1 301 -11 662 323 72 32 chr4 4467354 4467674 -179820988 - L1MEd LINE L1 -4488 1822 1458 2560 55 0 3 chr4 4467674 4467984 -179820678 - AluY SINE Alu -2 309 1 662 323 72 32 chr4 4467984 4468139 -179820523 - L1MEd LINE L1 -4852 1458 1311 457 312 73 65 chr4 4468601 4469334 -179819328 - L1MEd LINE L1 -4864 1255 540 2177 92 0 0 chr4 4469544 4469828 -179818834 + AluSc SINE Alu 5 288 -21 2114 196 56 0 chr4 4470070 4470463 -179818199 + MER47B DNA MER2_type 2 416 -2 599 100 260 0 chr4 4470496 4470596 -179818066 + AluSg SINE Alu 6 131 -179 2088 116 3 22 chr4 4470596 4470907 -179817755 + AluSq SINE Alu 5 309 -4 583 298 109 12 chr4 4470907 4471236 -179817426 + L1MC/D LINE L1 4829 5189 -957 226 248 17 94 chr4 4471236 4471353 -179817309 + L1MEc LINE L1 39 146 -6250 315 296 82 25 chr4 4473897 4474140 -179814522 - MLT2E LTR ERVL -338 290 34 2180 87 0 14 chr4 4474447 4474734 -179813928 - AluSx SINE Alu -17 295 13 2008 118 26 3 chr4 4474888 4475194 -179813468 - AluSp SINE Alu 0 313 1 2632 26 0 3 chr4 4475205 4475512 -179813150 - AluY SINE Alu -5 306 1 458 167 67 0 chr4 4475872 4475992 -179812670 - L1PA12 LINE L1 -115 6053 5926 1770 166 7 0 chr4 4476093 4476404 -179812258 - AluJo SINE Alu 0 312 1 305 302 54 11 chr4 4476501 4476613 -179812049 + L1MC/D LINE L1 5550 5666 -476 2974 175 39 24 chr4 4476614 4476797 -179811865 + L1MB3 LINE L1 5585 5764 -419 1864 162 3 3 chr4 4476797 4477100 -179811562 + AluJb SINE Alu 1 303 -9 2974 175 39 24 chr4 4477100 4477462 -179811200 + L1MB3 LINE L1 5764 6142 -41 2344 86 0 0 chr4 4477462 4477775 -179810887 + AluSq SINE Alu 1 313 0 2974 175 39 24 chr4 4477775 4477818 -179810844 + L1MB3 LINE L1 6142 6183 0 665 309 62 7 chr4 4477818 4478122 -179810540 + L1MC4a LINE L1 4650 4970 -1176 245 169 51 0 chr4 4478143 4478202 -179810460 - HAL1 LINE L1 -420 2087 2026 398 353 77 32 chr4 4478219 4478440 -179810222 + L1MC4a LINE L1 5668 5898 -1910 247 345 52 17 chr4 4479878 4480052 -179808610 + L2 LINE L2 3079 3258 -55 3879 229 113 66 chr4 4480256 4481130 -179807532 + Charlie1a DNA MER1_type 1 833 -1928 2162 58 0 81 chr4 4481130 4481440 -179807222 + AluY SINE Alu 14 298 -13 3879 229 113 66 chr4 4481440 4481896 -179806766 + Charlie1a DNA MER1_type 833 1401 -1360 2448 77 0 0 chr4 4481896 4482207 -179806455 - AluY SINE Alu 0 311 1 3879 229 113 66 chr4 4482207 4482265 -179806397 + Charlie1a DNA MER1_type 1401 1455 0 237 274 105 8 chr4 4482281 4482405 -179806257 - L1M3 LINE L1 -539 5641 5506 312 350 149 35 chr4 4482477 4482899 -179805763 - L1M3 LINE L1 -1444 4702 4121 2290 91 10 0 chr4 4482899 4483208 -179805454 - AluSx SINE Alu 0 312 1 312 350 149 35 chr4 4483208 4483385 -179805277 - L1M3 LINE L1 -2025 4121 3966 226 259 17 0 chr4 4484171 4484229 -179804433 - MER63 DNA MER1_type -272 789 731 244 331 19 69 chr4 4484592 4484752 -179803910 + L2 LINE L2 2609 2760 -554 188 244 56 11 chr4 4485081 4485171 -179803491 + L2 LINE L2 2882 2975 -339 299 318 98 0 chr4 4485212 4485344 -179803318 + L2 LINE L2 3119 3263 -50 28 0 0 0 chr4 4485970 4485998 -179802664 + GC_rich Low_complexity Low_complexity 1 28 0 282 298 36 0 chr4 4486336 4486420 -179802242 - MIR SINE MIR -72 136 50 2328 72 26 0 chr4 4486447 4486751 -179801911 + AluSq SINE Alu 1 312 -1 271 279 0 13 chr4 4487793 4487872 -179800790 + L2 LINE L2 2987 3064 -208 499 267 67 0 chr4 4488162 4488312 -179800350 - MIR SINE MIR -63 199 40 180 172 0 0 chr4 4488834 4488863 -179799799 - SUBTEL_sa Satellite Satellite -133 41 13 274 289 22 37 chr4 4488983 4489118 -179799544 + L1ME4a LINE L1 5978 6110 -11 393 355 29 6 chr4 4489259 4489431 -179799231 + MIR SINE MIR 21 196 -66 261 83 0 0 chr4 4490263 4490299 -179798363 + (A)n Simple_repeat Simple_repeat 1 36 0 290 274 33 16 chr4 4490354 4490480 -179798182 + MIR SINE MIR 56 183 -62 192 315 158 0 chr4 4494617 4494744 -179793918 + MIR3 SINE MIR 1 147 -61 2317 95 0 0 chr4 4504597 4504902 -179783760 + AluSq SINE Alu 1 305 -8 1708 207 128 24 chr4 4508905 4509412 -179779250 + MER68 LTR ERV1 1 560 -2 210 186 70 0 chr4 4510749 4510792 -179777870 + L2 LINE L2 3227 3272 0 1479 219 34 8 chr4 4511063 4511415 -179777247 + MLT1A1 LTR MaLR 5 365 0 405 158 67 6 chr4 4512211 4512375 -179776287 + (TG)n Simple_repeat Simple_repeat 1 174 0 264 196 54 18 chr4 4512390 4512558 -179776104 + (TG)n Simple_repeat Simple_repeat 1 174 0 461 139 66 12 chr4 4512640 4512806 -179775856 + (TG)n Simple_repeat Simple_repeat 1 175 0 184 143 71 0 chr4 4512852 4512922 -179775740 + (TG)n Simple_repeat Simple_repeat 1 75 0 186 143 0 0 chr4 4513274 4513309 -179775353 + (TCC)n Simple_repeat Simple_repeat 1 35 0 854 204 0 19 chr4 4515455 4515612 -179773050 - AluJb SINE Alu -21 291 138 23 0 0 0 chr4 4516056 4516079 -179772583 + AT_rich Low_complexity Low_complexity 1 23 0 283 333 49 14 chr4 4519673 4519817 -179768845 - MIR SINE MIR -75 187 39 477 244 0 9 chr4 4519945 4520060 -179768602 + L1MB8 LINE L1 6064 6177 -1 309 306 113 19 chr4 4520995 4521155 -179767507 - MIR SINE MIR -67 195 21 183 156 0 0 chr4 4522971 4523003 -179765659 + (CA)n Simple_repeat Simple_repeat 1 32 0 2478 85 0 0 chr4 4523292 4523585 -179765077 - AluSx SINE Alu -18 294 2 2828 7 0 0 chr4 4524897 4525193 -179763469 - AluYa5 SINE Alu -15 296 1 244 288 88 40 chr4 4525402 4525527 -179763135 - MIR SINE MIR 0 262 132 216 321 104 19 chr4 4526321 4526427 -179762235 - L2 LINE L2 0 3313 3199 215 346 0 0 chr4 4527674 4527752 -179760910 + L2 LINE L2 3227 3304 -9 675 297 50 5 chr4 4528331 4528550 -179760112 + MIR SINE MIR 18 246 -16 27 29 0 0 chr4 4529759 4529793 -179758869 + AT_rich Low_complexity Low_complexity 1 34 0 21 36 0 0 chr4 4530237 4530265 -179758397 + AT_rich Low_complexity Low_complexity 1 28 0 2446 81 0 7 chr4 4530733 4531041 -179757621 + AluSx SINE Alu 1 306 -6 28 48 0 0 chr4 4535991 4536033 -179752629 + AT_rich Low_complexity Low_complexity 1 42 0 1229 153 35 9 chr4 4536148 4536377 -179752285 - MER46A DNA MER2_type 0 236 2 508 241 90 66 chr4 4536623 4536835 -179751827 + L1ME4a LINE L1 5900 6116 -5 1577 178 3 53 chr4 4536946 4537249 -179751413 - AluJo SINE Alu -22 290 3 27 0 0 26 chr4 4537249 4537260 -179751402 + AT_rich Low_complexity Low_complexity 1 11 -26 643 202 8 8 chr4 4537260 4537389 -179751273 - FLAM_C SINE Alu -2 131 3 27 0 0 26 chr4 4537389 4537415 -179751247 + AT_rich Low_complexity Low_complexity 11 37 0 636 279 125 43 chr4 4538751 4538913 -179749749 + L1ME1 LINE L1 5743 5890 -276 1582 177 37 31 chr4 4538913 4539207 -179749455 - AluJo SINE Alu -16 296 1 636 279 125 43 chr4 4539207 4539435 -179749227 + L1ME1 LINE L1 5890 6165 -1 338 252 230 0 chr4 4539995 4540130 -179748532 + MER5C DNA MER1_type 85 250 -74 2312 117 0 3 chr4 4540383 4540690 -179747972 - AluSx SINE Alu -6 306 1 2324 88 10 0 chr4 4542380 4542676 -179745986 - AluSq SINE Alu -14 299 1 2270 126 3 0 chr4 4543412 4543721 -179744941 + AluSx SINE Alu 1 310 -2 621 311 40 18 chr4 4544143 4544368 -179744294 + MIR SINE MIR 14 243 -19 1982 164 0 7 chr4 4545183 4545482 -179743180 - AluJb SINE Alu -15 297 1 565 271 105 22 chr4 4546076 4546305 -179742357 + MLT1J2 LTR MaLR 203 450 0 787 241 45 0 chr4 4548118 4548317 -179740345 - MER3 DNA MER1_type 0 209 2 1482 203 0 45 chr4 4549559 4549870 -179738792 + AluJo SINE Alu 1 297 -15 344 289 100 22 chr4 4549884 4550064 -179738598 + MLT1K LTR MaLR 395 588 0 256 272 29 69 chr4 4550236 4550409 -179738253 - HAL1b LINE L1 -437 911 746 2501 77 10 3 chr4 4550465 4550776 -179737886 + AluSp SINE Alu 1 313 0 309 250 0 0 chr4 4551147 4551211 -179737451 - HAL1 LINE L1 -628 1879 1816 1056 135 214 44 chr4 4551230 4551482 -179737180 - AluJo SINE Alu -7 295 1 1774 153 26 35 chr4 4551562 4551875 -179736787 - AluJo SINE Alu -2 310 1 1682 191 30 0 chr4 4551896 4552194 -179736468 - AluJb SINE Alu -5 307 1 2884 133 64 2 chr4 4552195 4552693 -179735969 - L1MB3 LINE L1 -43 6140 5612 192 186 17 85 chr4 4553134 4553193 -179735469 + MIR SINE MIR 89 143 -119 417 289 64 0 chr4 4553643 4553799 -179734863 - MER97a DNA MER1_type? -715 179 14 463 191 16 165 chr4 4554409 4554501 -179734161 + MER5A DNA MER1_type 1 105 -84 2208 90 0 0 chr4 4554501 4554778 -179733884 + AluY SINE Alu 20 296 -15 2403 78 0 38 chr4 4554778 4555098 -179733564 + AluY SINE Alu 1 308 -3 463 191 16 165 chr4 4555098 4555198 -179733464 + MER5A DNA MER1_type 103 165 -24 324 349 92 13 chr4 4555559 4555711 -179732951 - L1ME4a LINE L1 -6 6115 5952 330 115 0 51 chr4 4555948 4556026 -179732636 + (TTCC)n Simple_repeat Simple_repeat 4 77 0 1619 153 102 4 chr4 4556031 4556306 -179732356 - AluJb SINE Alu -10 302 1 233 194 32 32 chr4 4556355 4556417 -179732245 - L1ME4a LINE L1 -379 5785 5724 344 317 219 3 chr4 4556560 4556948 -179731714 + L2 LINE L2 1466 1937 -1377 515 289 52 65 chr4 4557590 4558037 -179730625 + L2 LINE L2 2834 3274 -39 1634 169 18 14 chr4 4558755 4559034 -179729628 + AluJb SINE Alu 1 280 -32 249 33 0 0 chr4 4559034 4559064 -179729598 + (GGAAA)n Simple_repeat Simple_repeat 1 30 0 2185 107 3 20 chr4 4560755 4561055 -179727607 + AluSx SINE Alu 1 295 -17 223 221 0 29 chr4 4561073 4561141 -179727521 + C-rich Low_complexity Low_complexity 1 66 0 299 327 0 0 chr4 4562049 4562199 -179726463 + (CA)n Simple_repeat Simple_repeat 2 151 0 245 297 11 0 chr4 4562214 4562305 -179726357 + (CA)n Simple_repeat Simple_repeat 2 93 0 210 71 0 0 chr4 4562320 4562348 -179726314 + (CA)n Simple_repeat Simple_repeat 2 29 0 297 56 0 0 chr4 4563152 4563188 -179725474 + U2 snRNA snRNA 1 36 -152 2539 62 0 0 chr4 4565610 4565915 -179722747 + AluY SINE Alu 1 305 -6 183 80 0 0 chr4 4566995 4567020 -179721642 + (GAAA)n Simple_repeat Simple_repeat 3 27 0 2562 53 0 10 chr4 4567966 4568268 -179720394 + AluY SINE Alu 1 299 -12 228 348 8 59 chr4 4569847 4569965 -179718697 - L2 LINE L2 0 3313 3202 2199 113 3 19 chr4 4570160 4570478 -179718184 + AluSq SINE Alu 1 313 0 3464 226 63 79 chr4 4571024 4572063 -179716599 + L1MEc LINE L1 24 1077 -5319 2202 125 7 0 chr4 4572063 4572360 -179716302 + AluSx SINE Alu 1 299 -13 3464 226 63 79 chr4 4572360 4572619 -179716043 + L1MEc LINE L1 1077 1300 -5096 2476 87 0 0 chr4 4572619 4572930 -179715732 + AluY SINE Alu 1 311 0 3464 226 63 79 chr4 4572930 4573062 -179715600 + L1MEc LINE L1 1300 1433 -4963 911 151 19 25 chr4 4573075 4573234 -179715428 - AluJb SINE Alu -45 267 110 2049 129 0 3 chr4 4574566 4574853 -179713809 + AluSg SINE Alu 1 286 -24 37369 95 10 12 chr4 4574865 4581016 -179707646 + L1PA7 LINE L1 11 6154 0 229 347 32 0 chr4 4583427 4583522 -179705140 + L1M4 LINE L1 4482 4579 -1567 1830 145 35 0 chr4 4583654 4583944 -179704718 + AluJo SINE Alu 1 300 -12 783 158 30 8 chr4 4584260 4584393 -179704269 + MER68 LTR ERV1 117 252 -310 317 254 70 56 chr4 4584405 4584547 -179704115 + MER68 LTR ERV1 353 496 -66 2201 105 14 0 chr4 4585517 4585803 -179702859 + AluSx SINE Alu 1 290 -22 1398 117 77 55 chr4 4585812 4586016 -179702646 + L1MA8 LINE L1 6011 6224 -67 1889 137 0 56 chr4 4586016 4586337 -179702325 - AluSg SINE Alu -7 303 1 1398 117 77 55 chr4 4586337 4586406 -179702256 + L1MA8 LINE L1 6224 6290 -1 2155 105 0 14 chr4 4586412 4586735 -179701927 + AluY SINE Alu 1 319 0 184 0 0 88 chr4 4587653 4587687 -179700975 + (CAAAAA)n Simple_repeat Simple_repeat 2 32 0 1768 151 34 7 chr4 4588005 4588296 -179700366 - AluJo SINE Alu -13 299 1 300 228 78 5 chr4 4588319 4588408 -179700254 - MIR SINE MIR -68 140 48 1084 168 13 5 chr4 4588588 4588894 -179699768 + MLT1A1 LTR MaLR 1 374 0 1610 93 4 31 chr4 4588986 4589211 -179699451 + AluSc SINE Alu 1 219 -90 972 219 129 4 chr4 4589256 4589535 -179699127 + L1MB8 LINE L1 5859 6172 -6 2378 86 0 3 chr4 4589539 4589843 -179698819 + AluSg SINE Alu 1 303 -7 1016 168 7 0 chr4 4589843 4589998 -179698664 + AluJb SINE Alu 134 289 -23 23 0 0 0 chr4 4589998 4590021 -179698641 + AT_rich Low_complexity Low_complexity 1 23 0 210 288 34 0 chr4 4590035 4590094 -179698568 - L2 LINE L2 -685 2629 2569 217 200 60 0 chr4 4590105 4590155 -179698507 + (TATATG)n Simple_repeat Simple_repeat 6 58 0 1884 112 26 59 chr4 4590156 4590347 -179698315 - MER1B DNA MER1_type -2373 339 143 1700 116 100 107 chr4 4590347 4590778 -179697884 + MSTA LTR MaLR 1 428 0 1884 112 26 59 chr4 4590778 4590867 -179697795 - MER1B DNA MER1_type -2569 143 66 2207 88 0 11 chr4 4590867 4591182 -179697480 - AluY SINE Alu 0 312 1 1884 112 26 59 chr4 4591182 4591202 -179697460 - MER1B DNA MER1_type -2646 66 47 198 191 0 0 chr4 4591216 4591258 -179697404 + (TATATG)n Simple_repeat Simple_repeat 3 44 0 913 236 5 5 chr4 4591567 4591762 -179696900 - MER3 DNA MER1_type 0 209 15 2195 118 0 32 chr4 4592329 4592642 -179696020 + AluSq SINE Alu 1 303 -10 279 266 0 0 chr4 4592747 4592811 -179695851 + MER3 DNA MER1_type 15 78 -131 1879 141 3 46 chr4 4592966 4593129 -179695533 - AluSx SINE Alu -15 297 151 2539 48 0 3 chr4 4593129 4593421 -179695241 - AluY SINE Alu -20 291 1 1879 141 3 46 chr4 4593421 4593563 -179695099 - AluSx SINE Alu -161 151 5 901 299 46 46 chr4 4595360 4595881 -179692781 + ERVL LTR ERVL 4893 5413 -351 2217 128 0 0 chr4 4597321 4597619 -179691043 + AluSg SINE Alu 1 298 -12 403 160 75 11 chr4 4597664 4597758 -179690904 - L1ME4a LINE L1 -1 6120 6021 310 250 177 39 chr4 4597764 4597996 -179690666 - L1ME4a LINE L1 -126 5995 5732 2499 83 3 6 chr4 4598034 4598348 -179690314 + AluSp SINE Alu 1 313 0 2415 99 0 0 chr4 4598470 4598782 -179689880 - AluSx SINE Alu 0 312 1 27 29 0 0 chr4 4599605 4599639 -179689023 + AT_rich Low_complexity Low_complexity 1 34 0 1899 144 6 6 chr4 4600144 4600456 -179688206 - AluSx SINE Alu 0 312 1 2123 118 3 25 chr4 4601648 4601963 -179686699 - AluSg SINE Alu -2 308 1 2060 145 3 0 chr4 4602439 4602743 -179685919 + AluSx SINE Alu 1 305 -7 1984 146 7 10 chr4 4603023 4603331 -179685331 + AluSx SINE Alu 1 307 -5 1479 108 33 21 chr4 4603455 4603696 -179684966 + L1PB3 LINE L1 5911 6154 0 677 190 12 0 chr4 4603707 4603870 -179684792 + GA-rich Low_complexity Low_complexity 4 168 0 1368 194 73 60 chr4 4603922 4604227 -179684435 + L1MB7 LINE L1 5628 5978 -200 2268 79 7 0 chr4 4604227 4604505 -179684157 - AluSx SINE Alu -18 294 15 1368 194 73 60 chr4 4604505 4604709 -179683953 + L1MB7 LINE L1 5978 6178 0 2133 104 49 0 chr4 4604730 4605018 -179683644 + AluSg SINE Alu 1 302 -8 458 236 222 22 chr4 4605170 4605395 -179683267 + L1ME4a LINE L1 5836 6105 -16 527 128 0 13 chr4 4606600 4606678 -179681984 - AluSc SINE Alu -17 292 216 1852 163 27 0 chr4 4606914 4607214 -179681448 + AluJo SINE Alu 1 308 -4 23 0 0 0 chr4 4608392 4608415 -179680247 + AT_rich Low_complexity Low_complexity 1 23 0 1554 159 24 57 chr4 4608437 4608733 -179679929 - AluJb SINE Alu -25 287 2 2361 196 73 14 chr4 4612579 4613177 -179675485 + L1MB3 LINE L1 5548 6176 -7 22 0 0 0 chr4 4613418 4613440 -179675222 + AT_rich Low_complexity Low_complexity 1 22 0 246 206 32 16 chr4 4613692 4613703 -179674959 + AluYb8 SINE Alu 245 254 -54 1792 140 0 0 chr4 4613703 4613953 -179674709 + AluSx SINE Alu 1 250 -62 * 2341 109 0 0 chr4 4613952 4614254 -179674408 - AluSx SINE Alu -10 302 1 246 206 32 16 chr4 4614254 4614305 -179674357 + AluYb8 SINE Alu 555 308 0 24 53 0 0 chr4 4615356 4615394 -179673268 + AT_rich Low_complexity Low_complexity 1 38 0 1921 125 0 58 chr4 4615582 4615895 -179672767 + AluSx SINE Alu 1 295 -17 29 60 0 0 chr4 4616645 4616695 -179671967 + AT_rich Low_complexity Low_complexity 1 50 0 1092 168 59 25 chr4 4618233 4618399 -179670263 - AluJo SINE Alu -19 293 117 180 0 0 0 chr4 4618399 4618419 -179670243 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1092 168 59 25 chr4 4618419 4618454 -179670208 - AluJo SINE Alu -195 117 85 770 223 150 0 chr4 4618545 4618738 -179669924 + MER58A DNA MER1_type 1 222 -2 1434 158 74 37 chr4 4620045 4620342 -179668320 - AluJb SINE Alu -4 308 1 2258 133 18 3 chr4 4621148 4621480 -179667182 - MER1B DNA MER1_type 0 337 1 257 150 0 0 chr4 4621480 4621520 -179667142 - MER1B DNA MER1_type -297 40 1 848 180 51 0 chr4 4621573 4621751 -179666911 - MER53 DNA DNA -2 187 1 917 240 45 0 chr4 4621872 4622072 -179666590 + MER58A DNA MER1_type 5 213 -11 237 286 65 32 chr4 4622121 4622275 -179666387 - HAL1b LINE L1 -437 911 753 314 311 57 0 chr4 4622868 4622974 -179665688 - HAL1 LINE L1 -814 1693 1582 828 224 114 93 chr4 4623699 4624091 -179664571 + L1MC5 LINE L1 7270 7679 -282 1696 190 17 0 chr4 4624091 4624380 -179664282 - AluJb SINE Alu -18 294 1 828 224 114 93 chr4 4624380 4624546 -179664116 + L1MC5 LINE L1 7679 7840 -121 184 216 0 0 chr4 4624841 4624878 -179663784 - MIR SINE MIR -25 237 201 306 206 41 0 chr4 4624894 4624967 -179663695 - Charlie7 DNA MER1_type -2158 454 379 394 294 9 0 chr4 4625282 4625391 -179663271 + L2 LINE L2 3162 3271 -1 3763 109 0 4 chr4 4627530 4628043 -179660619 + MER9 LTR ERVK 1 511 0 2236 128 0 0 chr4 4628306 4628604 -179660058 + AluSx SINE Alu 1 298 -14 2001 257 70 20 chr4 4628950 4629654 -179659008 + L1ME3A LINE L1 5416 6154 -16 517 276 98 91 chr4 4629733 4630439 -179658223 + HAL1 LINE L1 1 711 -1796 2214 114 0 0 chr4 4630455 4630752 -179657910 + AluSx SINE Alu 14 310 -2 969 191 12 0 chr4 4630752 4630920 -179657742 + AluJo/FRAM SINE Alu 135 304 -8 583 228 56 28 chr4 4630978 4631158 -179657504 + HAL1 LINE L1 1178 1362 -1145 934 274 151 47 chr4 4631177 4631773 -179656889 + HAL1 LINE L1 1442 2099 -408 386 198 83 87 chr4 4632333 4632412 -179656250 + HAL1 LINE L1 2263 2341 -166 2265 91 7 0 chr4 4632412 4632721 -179655941 + AluSp SINE Alu 2 312 0 386 198 83 87 chr4 4632721 4632868 -179655794 + HAL1 LINE L1 2341 2491 -16 1607 188 0 33 chr4 4632868 4633172 -179655490 - AluJo SINE Alu -18 294 1 386 198 83 87 chr4 4633172 4633185 -179655477 + HAL1 LINE L1 2491 2503 -4 260 327 103 33 chr4 4633713 4633927 -179654735 - MIR SINE MIR 0 262 34 214 329 24 0 chr4 4635360 4635445 -179653217 - L2 LINE L2 -557 2757 2671 1666 158 59 0 chr4 4635574 4635847 -179652815 - AluJb SINE Alu -23 289 1 417 258 129 80 chr4 4636160 4636447 -179652215 - L2 LINE L2 -8 3305 3005 257 191 0 0 chr4 4636938 4636985 -179651677 + L1MA2 LINE L1 6070 6116 -188 1644 190 37 0 chr4 4637003 4637303 -179651359 - AluJb SINE Alu -1 311 1 2286 101 7 0 chr4 4637306 4637604 -179651058 - AluSx SINE Alu -8 304 5 717 45 0 0 chr4 4637638 4637727 -179650935 + AluS SINE Alu 2 90 -223 626 137 21 0 chr4 4637733 4637828 -179650834 + AluSg/x SINE Alu 193 289 -20 1074 117 12 0 chr4 4637829 4637991 -179650671 + L1MA2 LINE L1 6134 6297 -7 28 29 0 0 chr4 4638001 4638036 -179650626 + AT_rich Low_complexity Low_complexity 1 35 0 2566 62 0 3 chr4 4638410 4638714 -179649948 + AluSp SINE Alu 1 303 -10 21 0 0 0 chr4 4638727 4638748 -179649914 + AT_rich Low_complexity Low_complexity 1 21 0 1942 131 3 3 chr4 4640907 4641190 -179647472 + AluJb SINE Alu 1 283 -29 200 261 15 0 chr4 4641681 4641746 -179646916 + (CA)n Simple_repeat Simple_repeat 1 66 0 1450 158 54 28 chr4 4642664 4642981 -179645681 + L1MC3 LINE L1 7461 7785 0 1030 159 246 10 chr4 4643802 4644111 -179644551 - Charlie5 DNA MER1_type 0 2624 2243 3914 247 58 31 chr4 4644116 4644282 -179644380 - L1MEc LINE L1 -2647 3568 3408 2324 113 0 0 chr4 4644282 4644583 -179644079 - AluSx SINE Alu -8 304 4 3914 247 58 31 chr4 4644583 4644806 -179643856 - L1MEc LINE L1 -2807 3408 3192 1717 198 0 0 chr4 4644806 4645099 -179643563 - AluJo SINE Alu -19 293 1 3914 247 58 31 chr4 4645099 4646062 -179642600 - L1MEc LINE L1 -3023 3192 2179 429 242 129 16 chr4 4646071 4646257 -179642405 - L1MEc LINE L1 -4205 2191 1985 574 156 15 82 chr4 4646257 4646392 -179642270 - MLT1D LTR MaLR -3 502 377 9082 59 7 172 chr4 4646395 4648023 -179640639 + SVA Other Other 28 1386 0 1195 204 59 64 chr4 4648067 4648455 -179640207 - MLT1D LTR MaLR -119 386 1 315 248 74 33 chr4 4648455 4648576 -179640086 - L1MEc LINE L1 -4424 1972 1847 * 2154 251 68 22 chr4 4648570 4649216 -179639446 - L1MEc LINE L1 -5720 676 1 1696 174 17 7 chr4 4649254 4649542 -179639120 + AluJo SINE Alu 1 291 -21 2055 108 7 7 chr4 4649616 4649902 -179638760 + AluSg SINE Alu 1 286 -24 301 274 69 10 chr4 4650013 4650115 -179638547 - L1ME LINE L1 -462 5659 5552 584 205 8 33 chr4 4650210 4650332 -179638330 - MLT1A2 LTR MaLR 0 374 256 2158 148 0 0 chr4 4650795 4651106 -179637556 - AluSq SINE Alu -2 311 1 325 283 56 66 chr4 4651124 4651322 -179637340 - L1ME LINE L1 -1477 4669 4474 213 298 0 18 chr4 4651606 4651663 -179636999 + MER5A DNA MER1_type 131 186 -3 2500 68 0 0 chr4 4652383 4652676 -179635986 + AluY SINE Alu 1 293 -18 283 288 141 18 chr4 4652753 4652916 -179635746 - MIR SINE MIR -29 233 51 984 204 102 32 chr4 4653170 4653454 -179635208 + L1MB3 LINE L1 5879 6182 -1 2271 83 41 0 chr4 4653462 4653752 -179634910 + AluY SINE Alu 1 302 -9 2176 87 49 7 chr4 4653801 4654089 -179634573 + AluSp SINE Alu 3 302 -11 1610 202 10 10 chr4 4655240 4655547 -179633115 - AluJo SINE Alu -5 307 1 307 290 65 0 chr4 4655554 4655661 -179633001 - MIR SINE MIR -117 145 32 427 294 28 28 chr4 4655667 4655844 -179632818 + MER104 DNA Tc2 1 177 -3 2068 104 24 0 chr4 4656503 4656791 -179631871 + AluSx SINE Alu 1 295 -17 940 129 14 0 chr4 4656661 4656800 -179631862 + AluSg/x SINE Alu 162 302 -8 2444 93 0 3 chr4 4656893 4657204 -179631458 - AluY SINE Alu -1 310 1 2239 122 0 3 chr4 4657233 4657529 -179631133 - AluSx SINE Alu -17 295 1 851 146 0 0 chr4 4657606 4657743 -179630919 + AluSg/x SINE Alu 174 310 0 2483 149 99 62 chr4 4657744 4658308 -179630354 - L1MD2 LINE L1 -291 6068 5484 513 0 0 0 chr4 4658348 4658405 -179630257 + (TG)n Simple_repeat Simple_repeat 2 58 0 1555 170 24 35 chr4 4658408 4658697 -179629965 - AluJo SINE Alu -26 286 1 411 267 182 15 chr4 4658748 4659025 -179629637 + L2 LINE L2 2784 3104 -209 252 311 236 20 chr4 4659270 4659418 -179629244 - MER5A DNA MER1_type 0 189 10 390 296 127 55 chr4 4659771 4660024 -179628638 + L1ME4a LINE L1 5840 6110 -11 2482 74 6 3 chr4 4660078 4660389 -179628273 + AluSp SINE Alu 1 312 -1 1238 183 70 4 chr4 4660444 4660717 -179627945 + MER58B DNA MER1_type 43 333 -8 3635 184 37 1 chr4 4660717 4661510 -179627152 + L1M4 LINE L1 4517 5337 -809 2293 126 0 0 chr4 4661541 4661842 -179626820 + AluSq SINE Alu 1 301 -12 955 266 58 35 chr4 4662012 4662410 -179626252 + L2 LINE L2 2503 2909 -405 918 207 5 25 chr4 4662490 4662688 -179625974 + AluJo SINE Alu 112 305 -7 189 191 24 0 chr4 4662693 4662735 -179625927 + L2 LINE L2 3032 3074 -239 1759 154 0 45 chr4 4662740 4662885 -179625777 + AluSx SINE Alu 1 128 -184 2397 67 0 54 chr4 4662885 4663200 -179625462 + AluY SINE Alu 1 298 -13 1759 154 0 45 chr4 4663200 4663340 -179625322 + AluSx SINE Alu 128 273 -39 224 59 29 0 chr4 4663347 4663381 -179625281 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 394 98 16 0 chr4 4663393 4663454 -179625208 + U7 snRNA snRNA 2 63 0 23 0 0 0 chr4 4663457 4663480 -179625182 + AT_rich Low_complexity Low_complexity 1 23 0 693 233 93 23 chr4 4663496 4663711 -179624951 + L2 LINE L2 3084 3313 0 21 57 0 0 chr4 4664130 4664165 -179624497 + AT_rich Low_complexity Low_complexity 1 35 0 2221 119 0 0 chr4 4664218 4664504 -179624158 + AluSg SINE Alu 1 286 -24 2240 109 0 0 chr4 4664750 4665035 -179623627 - AluSx SINE Alu -22 290 6 228 224 13 66 chr4 4665180 4665256 -179623406 - Tigger2 DNA MER2_type -233 2485 2414 183 100 0 0 chr4 4666882 4666912 -179621750 + (CGGGGG)n Simple_repeat Simple_repeat 4 33 0 261 198 0 0 chr4 4666914 4666995 -179621667 + (CGG)n Simple_repeat Simple_repeat 3 83 0 555 16 0 0 chr4 4666995 4667059 -179621603 + (CTG)n Simple_repeat Simple_repeat 1 64 0 28 61 0 0 chr4 4667283 4667332 -179621330 + GC_rich Low_complexity Low_complexity 1 49 0 402 270 0 53 chr4 4667481 4667670 -179620992 + (CGGGG)n Simple_repeat Simple_repeat 1 179 0 197 62 0 31 chr4 4667681 4667713 -179620949 + (CGGGG)n Simple_repeat Simple_repeat 4 34 0 381 239 6 40 chr4 4667748 4667924 -179620738 + (CGGGG)n Simple_repeat Simple_repeat 5 174 0 733 144 24 8 chr4 4668873 4668998 -179619664 + FRAM SINE Alu 28 154 -22 2296 98 10 3 chr4 4669012 4669308 -179619354 + AluSx SINE Alu 6 303 -9 1427 238 121 23 chr4 4669382 4669853 -179618809 + MLT1E LTR MaLR 8 524 -69 2023 156 48 0 chr4 4669949 4670321 -179618341 - MLT1B LTR MaLR 0 390 1 1412 216 20 73 chr4 4671094 4671492 -179617170 - MLT2D LTR ERVL -8 406 30 1125 158 6 0 chr4 4671521 4671686 -179616976 - AluJb SINE Alu -6 306 141 1986 96 75 4 chr4 4671702 4671982 -179616680 - AluSq SINE Alu -13 300 1 510 276 76 0 chr4 4672999 4673184 -179615478 - LTR33 LTR ERVL -20 501 303 581 181 26 9 chr4 4673196 4673312 -179615350 - LTR33 LTR ERVL -356 165 48 328 291 101 0 chr4 4673460 4673608 -179615054 + L1ME3A LINE L1 5789 5951 -219 2394 106 0 0 chr4 4673661 4673972 -179614690 + AluY SINE Alu 1 311 0 1302 274 44 39 chr4 4673991 4674630 -179614032 - L1ME LINE L1 -4816 1266 732 2207 128 3 0 chr4 4674630 4674926 -179613736 + AluSx SINE Alu 2 298 -14 1302 274 44 39 chr4 4674926 4675195 -179613467 - L1ME LINE L1 -5350 732 466 4592 229 99 29 chr4 4675869 4676447 -179612215 - Zaphod DNA AcHobo -5 4026 3490 2185 129 0 3 chr4 4676447 4676741 -179611921 - AluSx SINE Alu -19 293 1 4592 229 99 29 chr4 4676741 4677008 -179611654 - Zaphod DNA AcHobo -541 3490 3243 2005 101 53 63 chr4 4677008 4677386 -179611276 - THE1C LTR MaLR -1 374 1 4592 229 99 29 chr4 4677386 4678051 -179610611 - Zaphod DNA AcHobo -788 3243 2409 2458 93 3 0 chr4 4678073 4678384 -179610278 + AluSx SINE Alu 1 312 0 889 264 134 26 chr4 4678385 4678772 -179609890 - Zaphod DNA AcHobo -3254 777 349 286 286 62 19 chr4 4678804 4678965 -179609697 + L1ME LINE L1 21 188 -6235 4887 241 105 79 chr4 4679494 4680863 -179607799 + L1ME LINE L1 1263 2594 -4347 2364 113 0 6 chr4 4680863 4681174 -179607488 + AluSq SINE Alu 1 309 -4 4887 241 105 79 chr4 4681174 4681627 -179607035 + L1ME LINE L1 2594 3034 -3907 2527 77 0 3 chr4 4681627 4681937 -179606725 + AluY SINE Alu 1 309 -2 4887 241 105 79 chr4 4681937 4682793 -179605869 + L1ME LINE L1 3034 3866 -3075 2179 73 4 11 chr4 4682793 4683094 -179605568 + AluSg SINE Alu 13 311 0 4887 241 105 79 chr4 4683094 4683797 -179604865 + L1ME LINE L1 3866 4549 -2392 2048 141 0 3 chr4 4683797 4684081 -179604581 + AluSx SINE Alu 1 283 -29 522 46 0 0 chr4 4684082 4684147 -179604515 + (GGAA)n Simple_repeat Simple_repeat 1 65 0 4887 241 105 79 chr4 4684147 4684861 -179603801 + L1ME LINE L1 4549 5243 -1698 2182 118 3 22 chr4 4684861 4685176 -179603486 + AluSq SINE Alu 1 309 -4 4887 241 105 79 chr4 4685176 4685505 -179603157 + L1ME LINE L1 5243 5984 -957 246 248 17 94 chr4 4685505 4685622 -179603040 + L1MEc LINE L1 39 146 -6250 342 296 82 25 chr4 4688166 4688409 -179600253 - MLT2E LTR ERVL -338 290 34 2288 87 0 14 chr4 4688716 4689003 -179599659 - AluSx SINE Alu -17 295 13 2153 108 26 3 chr4 4689157 4689463 -179599199 - AluSp SINE Alu 0 313 1 2677 26 0 7 chr4 4689474 4689776 -179598886 - AluY SINE Alu -11 300 1 482 167 67 0 chr4 4690137 4690257 -179598405 - L1PA12 LINE L1 -115 6053 5926 1828 170 7 0 chr4 4690355 4690666 -179597996 - AluJo SINE Alu 0 312 1 242 230 68 14 chr4 4690781 4690855 -179597807 + L1ME LINE L1 6363 6440 -476 2660 173 39 24 chr4 4690876 4691059 -179597603 + L1MB3 LINE L1 5585 5764 -419 1922 165 3 3 chr4 4691059 4691362 -179597300 + AluJb SINE Alu 1 303 -9 2660 173 39 24 chr4 4691362 4691724 -179596938 + L1MB3 LINE L1 5764 6142 -41 2450 86 0 0 chr4 4691724 4692037 -179596625 + AluSq SINE Alu 1 313 0 2660 173 39 24 chr4 4692037 4692080 -179596582 + L1MB3 LINE L1 6142 6183 0 690 299 66 10 chr4 4692080 4692384 -179596278 + L1MC4a LINE L1 4650 4970 -1176 262 169 51 0 chr4 4692405 4692464 -179596198 - HAL1 LINE L1 -420 2087 2026 321 339 81 36 chr4 4692481 4692702 -179595960 + L1MC4a LINE L1 5668 5898 -1910 246 299 56 28 chr4 4694170 4694314 -179594348 + L2 LINE L2 3111 3258 -55 2054 249 107 15 chr4 4694706 4695388 -179593274 + Charlie1 DNA MER1_type 1538 2282 -479 2172 55 0 85 chr4 4695392 4695685 -179592977 + AluY SINE Alu 14 281 -30 227 205 60 48 chr4 4696599 4696682 -179591980 + HAL1 LINE L1 1304 1387 -1120 234 318 139 20 chr4 4699310 4699461 -179589201 + MLT1-int LTR MaLR 719 887 -484 974 246 104 30 chr4 4700024 4700471 -179588191 + MLT1F1 LTR MaLR 2 540 -114 222 208 19 17 chr4 4700760 4700820 -179587842 - MIR3 SINE MIR -52 156 114 180 111 0 0 chr4 4702316 4702343 -179586319 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 444 219 38 19 chr4 4703358 4703463 -179585199 + MER53 DNA DNA 1 107 -82 241 257 0 71 chr4 4703684 4703824 -179584838 + (CCCCAG)n Simple_repeat Simple_repeat 4 133 0 322 267 13 0 chr4 4704500 4704575 -179584087 + L2 LINE L2 3232 3307 -6 207 43 29 100 chr4 4705037 4705107 -179583555 + (TCCC)n Simple_repeat Simple_repeat 2 66 0 292 262 220 6 chr4 4705114 4705282 -179583380 - MER58A DNA MER1_type -20 204 1 301 208 0 31 chr4 4707284 4707414 -179581248 + (CA)n Simple_repeat Simple_repeat 2 127 0 287 289 0 0 chr4 4707437 4707520 -179581142 + (CA)n Simple_repeat Simple_repeat 1 83 0 453 250 2 4 chr4 4707549 4707933 -179580729 + (CA)n Simple_repeat Simple_repeat 1 383 0 329 224 6 0 chr4 4707960 4708116 -179580546 + (CA)n Simple_repeat Simple_repeat 1 157 0 657 301 79 18 chr4 4709227 4709506 -179579156 - L1ME3A LINE L1 -206 5964 5669 239 252 0 0 chr4 4709562 4709623 -179579039 - L1ME3A LINE L1 -790 5356 5296 1994 214 11 15 chr4 4709857 4710395 -179578267 + L1MB3 LINE L1 2916 3451 -2695 825 114 8 0 chr4 4710400 4710523 -179578139 + AluJb SINE Alu 2 125 -187 2137 131 0 0 chr4 4710536 4710848 -179577814 + AluSx SINE Alu 1 312 0 872 165 35 18 chr4 4710849 4711019 -179577643 + L1MB3 LINE L1 3446 3618 -2528 829 142 18 17 chr4 4711022 4711599 -179577063 + GA-rich Low_complexity Low_complexity 1 577 0 7497 168 45 16 chr4 4711604 4714097 -179574565 + L1MB3 LINE L1 3611 6183 0 1910 145 0 3 chr4 4714104 4714408 -179574254 + AluJb SINE Alu 1 303 -9 308 211 84 21 chr4 4714428 4714523 -179574139 - L1ME3A LINE L1 -1479 4667 4567 1284 228 120 83 chr4 4714533 4714634 -179574028 - L1ME3A LINE L1 -1816 4330 4234 1919 164 0 0 chr4 4714634 4714939 -179573723 - AluJb SINE Alu 0 312 8 1284 228 120 83 chr4 4714939 4715544 -179573118 - L1ME3A LINE L1 -1912 4234 3598 789 283 108 34 chr4 4715529 4716003 -179572659 - L1ME3A LINE L1 -2954 3192 2684 * 1718 341 56 17 chr4 4716481 4717567 -179571095 + HERV16 LTR ERVL 1851 2987 -2009 2584 130 34 20 chr4 4717567 4718006 -179570656 + MER65A LTR ERV1 1 445 0 6464 167 58 32 chr4 4718007 4719747 -179568915 + MER65A-int LTR ERV1 6 1905 -2966 1917 164 0 0 chr4 4719747 4720059 -179568603 - AluJo SINE Alu 0 312 1 6464 167 58 32 chr4 4720059 4720694 -179567968 + MER65A-int LTR ERV1 1905 2522 -2349 1422 180 82 96 chr4 4720700 4721425 -179567237 + MER65A-int LTR ERV1 1546 3475 -3123 718 147 156 102 chr4 4721623 4721848 -179566814 + MER65A-int LTR ERV1 3494 3730 -2868 1344 134 48 45 chr4 4721928 4722219 -179566443 + MER65A-int LTR ERV1 3730 4021 -2577 * 2813 175 110 46 chr4 4722202 4722995 -179565667 + MER65A-int LTR ERV1 2805 3546 -2785 2285 86 0 0 chr4 4722995 4723296 -179565366 - AluY SINE Alu -10 301 1 2813 175 110 46 chr4 4723296 4723680 -179564982 + MER65A-int LTR ERV1 3546 5094 -1237 255 158 0 0 chr4 4723663 4723701 -179564961 + MER65A-int LTR ERV1 5337 5374 -957 * 3918 156 94 3 chr4 4723732 4724413 -179564249 + MER65A-int LTR ERV1 3605 4347 -524 663 139 130 0 chr4 4724418 4724533 -179564129 + BC200 scRNA scRNA 5 134 -66 3515 96 20 6 chr4 4724555 4725064 -179563598 + MER65A-int LTR ERV1 4356 4871 0 2488 124 54 28 chr4 4725064 4725492 -179563170 + MER65A LTR ERV1 1 439 -6 1222 254 79 10 chr4 4726622 4727016 -179561646 + L1MC2 LINE L1 5918 6338 -6 317 305 57 14 chr4 4727058 4727199 -179561463 + MIR SINE MIR 102 248 -14 193 228 81 106 chr4 4727753 4727876 -179560786 + MIR SINE MIR 111 230 -32 510 312 3 10 chr4 4728631 4729061 -179559601 + C-rich Low_complexity Low_complexity 1 427 0 456 321 0 39 chr4 4729113 4729370 -179559292 + C-rich Low_complexity Low_complexity 1 246 0 2081 185 40 7 chr4 4730592 4731019 -179557643 + MER65A LTR ERV1 5 445 0 1817 150 7 0 chr4 4731036 4731330 -179557332 - AluJo SINE Alu -15 297 2 2118 104 3 0 chr4 4732173 4732462 -179556200 + AluSp SINE Alu 2 291 -22 258 208 139 10 chr4 4732524 4732625 -179556037 - MIR3 SINE MIR -54 154 41 3637 198 58 24 chr4 4732684 4733523 -179555139 - L1MB3 LINE L1 -15 6168 5299 805 226 28 9 chr4 4733623 4733840 -179554822 - L1MB3 LINE L1 -811 5335 5115 370 328 42 0 chr4 4733886 4734005 -179554657 + L2 LINE L2 3148 3271 -1 335 243 83 48 chr4 4734127 4734378 -179554284 - LTR33A LTR ERVL 0 773 262 2056 102 0 7 chr4 4734406 4734724 -179553938 - AluSx SINE Alu 0 316 1 471 172 0 50 chr4 4734727 4734826 -179553836 - AluJo/FRAM SINE Alu -17 295 202 250 191 0 0 chr4 4734826 4734868 -179553794 - Alu SINE Alu -260 42 1 25 0 0 0 chr4 4735844 4735869 -179552793 + AT_rich Low_complexity Low_complexity 1 25 0 212 196 0 39 chr4 4735924 4735975 -179552687 + GA-rich Low_complexity Low_complexity 4 52 0 622 254 96 44 chr4 4735994 4736379 -179552283 + L1ME3A LINE L1 3634 4038 -2108 522 306 150 22 chr4 4736475 4737021 -179551641 + L1ME3A LINE L1 4379 4994 -1152 616 92 0 23 chr4 4737096 4737183 -179551479 + AluSx SINE Alu 3 87 -226 2323 50 7 3 chr4 4737183 4737480 -179551182 + AluY SINE Alu 1 298 -13 1688 79 0 5 chr4 4737480 4737694 -179550968 + AluSx SINE Alu 73 287 -25 336 233 12 12 chr4 4737929 4738015 -179550647 + L1ME3A LINE L1 5401 5486 -2322 252 275 90 36 chr4 4738091 4738258 -179550404 + L1ME3A LINE L1 5781 5956 -214 30 0 0 0 chr4 4739078 4739108 -179549554 + AT_rich Low_complexity Low_complexity 1 30 0 239 250 45 11 chr4 4739217 4739305 -179549357 - L1ME4a LINE L1 -100 6021 5931 846 253 203 9 chr4 4739448 4739788 -179548874 + MLT1J LTR MaLR 2 407 -104 326 164 33 0 chr4 4739931 4739992 -179548670 - L2 LINE L2 -1 3312 3250 934 171 96 21 chr4 4741898 4742085 -179546577 - MSTC LTR MaLR -1 427 227 226 188 21 115 chr4 4742111 4742134 -179546528 - L1MA4A LINE L1 -4 6299 6277 9640 166 46 10 chr4 4742134 4743990 -179544672 - L1PB4 LINE L1 -6 6150 4175 1618 171 21 3 chr4 4743990 4744276 -179544386 + AluJo SINE Alu 1 291 -21 9640 166 46 10 chr4 4744276 4745014 -179543648 - L1PB4 LINE L1 -1981 4175 3465 1025 117 25 77 chr4 4745014 4745210 -179543452 - MSTC LTR MaLR -242 186 1 255 254 164 26 chr4 4745508 4745697 -179542965 + L1MC4a LINE L1 5254 5468 -2340 306 0 0 0 chr4 4746623 4746657 -179542005 + (TC)n Simple_repeat Simple_repeat 1 34 0 207 0 0 0 chr4 4746656 4746679 -179541983 + (CA)n Simple_repeat Simple_repeat 1 23 0 * 424 315 91 20 chr4 4746679 4747073 -179541589 + L1MC4a LINE L1 5533 5954 -1854 706 254 24 15 chr4 4747646 4747851 -179540811 - Charlie1 DNA MER1_type 0 2761 2555 185 0 0 39 chr4 4747920 4747946 -179540716 + (TTAA)n Simple_repeat Simple_repeat 4 28 0 277 253 77 0 chr4 4748983 4749074 -179539588 + LTR50 LTR ERVL 1 98 -697 385 217 24 21 chr4 4749329 4749454 -179539208 + LTR50 LTR ERVL 654 792 -3 1739 129 3 58 chr4 4750783 4751092 -179537570 + AluJo SINE Alu 1 292 -20 810 154 18 24 chr4 4751215 4751384 -179537278 - AluJo SINE Alu -9 303 136 225 156 302 2 chr4 4754763 4754826 -179533836 + MER5C DNA MER1_type 4 85 -104 2212 204 77 6 chr4 4755200 4755721 -179532941 - MER68 LTR ERV1 -2 560 3 2209 77 0 7 chr4 4755825 4756133 -179532529 + AluY SINE Alu 1 306 0 85 35 0 0 chr4 4756446 4756559 -179532103 + AT_rich Low_complexity Low_complexity 1 113 0 571 272 107 35 chr4 4756741 4757031 -179531631 + MLT1D LTR MaLR 195 505 0 653 150 0 35 chr4 4757456 4757569 -179531093 - FRAM SINE Alu -9 167 59 630 179 9 0 chr4 4758145 4758251 -179530411 - AluJo SINE Alu -170 142 36 202 293 9 57 chr4 4758421 4758527 -179530135 - MER5A DNA MER1_type -71 118 18 * 257 324 54 0 chr4 4758518 4758592 -179530070 - MIR3 SINE MIR -40 168 91 1470 161 53 5 chr4 4758681 4759011 -179529651 - Tigger4(Zombi) DNA MER2_type 0 2731 1 507 266 13 38 chr4 4759489 4759647 -179529015 - MIR SINE MIR -72 190 37 899 246 104 30 chr4 4765546 4765993 -179522669 + MLT1F1 LTR MaLR 2 540 -114 291 192 0 0 chr4 4767827 4767900 -179520762 + (TG)n Simple_repeat Simple_repeat 1 73 0 4275 118 12 17 chr4 4768275 4768461 -179520201 + MER41B LTR ERV1 1 186 -449 1796 130 92 0 chr4 4768461 4768745 -179519917 + AluSx SINE Alu 1 310 -2 4275 118 12 17 chr4 4768745 4769196 -179519466 + MER41B LTR ERV1 186 635 0 735 108 0 0 chr4 4769536 4769638 -179519024 + U6 snRNA snRNA 1 102 -5 1811 119 79 0 chr4 4769785 4770062 -179518600 - AluSx SINE Alu -13 299 1 3970 158 99 38 chr4 4770096 4770907 -179517755 + MER21B LTR ERV1 3 862 -1 1884 228 50 14 chr4 4770917 4771435 -179517227 - MER72 LTR ERV1 -174 548 12 2916 115 18 18 chr4 4771549 4771983 -179516679 - MER57B LTR ERV1 0 434 1 1207 72 63 31 chr4 4771983 4772195 -179516467 - MER57B-int LTR ERV1 0 7537 7279 748 86 23 31 chr4 4772195 4772323 -179516339 - LTR54B LTR ERV1 -367 131 5 14293 97 72 47 chr4 4772323 4772364 -179516298 - MER57B-int LTR ERV1 -387 7150 7112 6322 113 17 42 chr4 4772364 4772465 -179516197 + LTR13 LTR ERVK 1 103 -851 2515 46 0 0 chr4 4772465 4772784 -179515878 + AluY SINE Alu 1 319 0 6322 113 17 42 chr4 4772784 4773659 -179515003 + LTR13 LTR ERVK 103 954 0 14293 97 72 47 chr4 4773659 4774577 -179514085 - MER57B-int LTR ERV1 -425 7112 6219 2244 123 0 0 chr4 4774577 4774877 -179513785 + AluSx SINE Alu 1 300 -12 14293 97 72 47 chr4 4774877 4775342 -179513320 - MER57B-int LTR ERV1 -1318 6219 5767 399 41 0 0 chr4 4775342 4775391 -179513271 + (CA)n Simple_repeat Simple_repeat 1 49 0 596 96 48 0 chr4 4775391 4775474 -179513188 - AluSg/x SINE Alu -18 292 206 14293 97 72 47 chr4 4775474 4776407 -179512255 - MER57B-int LTR ERV1 -1769 5768 4646 407 91 0 30 chr4 4776407 4776466 -179512196 - MER57B-int LTR ERV1 -3194 4343 4284 459 0 0 0 chr4 4776466 4776517 -179512145 + (TG)n Simple_repeat Simple_repeat 2 52 0 2216 99 7 0 chr4 4776517 4776800 -179511862 - AluSp SINE Alu -28 285 1 4942 125 61 36 chr4 4776815 4777687 -179510975 + MER57-int LTR ERV1 1478 2371 -5166 849 153 27 0 chr4 4777686 4777836 -179510826 + MER57-int LTR ERV1 2476 2629 -4908 * 1672 82 55 8 chr4 4777832 4778089 -179510573 + MER57-int LTR ERV1 2781 3049 -4488 3512 92 31 81 chr4 4778094 4778144 -179510518 + MER57-int LTR ERV1 3248 3299 -4517 2157 110 3 23 chr4 4778144 4778444 -179510218 + AluSx SINE Alu 1 294 -18 3512 92 31 81 chr4 4778444 4778689 -179509973 + MER57-int LTR ERV1 3299 3555 -4261 2231 135 0 0 chr4 4778689 4779000 -179509662 + AluSx SINE Alu 2 312 0 3512 92 31 81 chr4 4779000 4779192 -179509470 + MER57-int LTR ERV1 3555 3755 -4061 2335 96 7 3 chr4 4779192 4779495 -179509167 - AluSq SINE Alu -9 304 1 3512 92 31 81 chr4 4779495 4779814 -179508848 + MER57-int LTR ERV1 3755 4143 -3673 2239 64 21 0 chr4 4779812 4780142 -179508520 + MER57-int LTR ERV1 3914 4250 -3287 * 2063 107 0 0 chr4 4780142 4780414 -179508248 - AluSg SINE Alu -2 308 37 812 251 116 28 chr4 4780514 4780869 -179507793 - MLT1J LTR MaLR -109 402 17 2115 156 51 0 chr4 4780880 4781251 -179507411 + MLT1B LTR MaLR 1 390 0 1287 239 134 19 chr4 4781347 4781811 -179506851 - MLT1E LTR MaLR -69 524 8 2152 99 20 3 chr4 4781884 4782177 -179506485 - AluSx SINE Alu -9 303 6 734 146 41 8 chr4 4782191 4782314 -179506348 - FRAM SINE Alu -22 154 28 452 234 6 34 chr4 4783256 4783431 -179505231 + (CCCCG)n Simple_repeat Simple_repeat 5 174 0 314 209 18 42 chr4 4783466 4783642 -179505020 + (CCCCG)n Simple_repeat Simple_repeat 1 171 0 28 61 0 0 chr4 4783840 4783889 -179504773 + GC_rich Low_complexity Low_complexity 1 49 0 555 16 0 0 chr4 4784109 4784173 -179504489 + (CAG)n Simple_repeat Simple_repeat 1 64 0 378 181 0 0 chr4 4784175 4784280 -179504382 + (CCG)n Simple_repeat Simple_repeat 2 106 0 23 33 0 0 chr4 4786074 4786104 -179502558 + AT_rich Low_complexity Low_complexity 1 30 0 2233 109 0 0 chr4 4786111 4786396 -179502266 + AluSx SINE Alu 6 290 -22 2170 119 3 0 chr4 4786638 4786923 -179501739 - AluSg SINE Alu -24 286 1 21 57 0 0 chr4 4786970 4787005 -179501657 + AT_rich Low_complexity Low_complexity 1 35 0 740 233 93 23 chr4 4787412 4787627 -179501035 - L2 LINE L2 0 3313 3084 23 0 0 0 chr4 4787643 4787666 -179500996 + AT_rich Low_complexity Low_complexity 1 23 0 418 98 16 0 chr4 4787669 4787730 -179500932 - U7 snRNA snRNA 0 63 2 1934 151 3 40 chr4 4787743 4787921 -179500741 - AluSx SINE Alu 0 312 150 2381 67 0 54 chr4 4787921 4788236 -179500426 - AluY SINE Alu -13 298 1 1934 151 3 40 chr4 4788236 4788381 -179500281 - AluSx SINE Alu -162 150 1 203 191 24 0 chr4 4788386 4788428 -179500234 - L2 LINE L2 -239 3074 3032 890 171 6 47 chr4 4788433 4788603 -179500059 - FRAM SINE Alu -13 163 1 977 273 88 33 chr4 4788604 4789100 -179499562 - L2 LINE L2 -277 3036 2503 2290 126 0 0 chr4 4789270 4789571 -179499091 - AluSq SINE Alu -12 301 1 3533 187 31 0 chr4 4789626 4790392 -179498270 - L1M4 LINE L1 -840 5306 4517 1203 181 78 4 chr4 4790392 4790663 -179497999 - MER58B DNA MER1_type -8 333 43 2476 74 6 3 chr4 4790718 4791029 -179497633 - AluSp SINE Alu -1 312 1 353 307 132 52 chr4 4791082 4791333 -179497329 - L1ME4a LINE L1 -11 6110 5840 282 304 236 20 chr4 4791683 4791831 -179496831 + MER5A DNA MER1_type 10 189 0 476 267 182 15 chr4 4792076 4792353 -179496309 - L2 LINE L2 -209 3104 2784 1505 185 25 25 chr4 4792402 4792688 -179495974 + AluJo SINE Alu 1 286 -26 495 0 0 0 chr4 4792693 4792748 -179495914 + (CA)n Simple_repeat Simple_repeat 2 56 0 2308 148 112 59 chr4 4792788 4793344 -179495318 + L1MD2 LINE L1 5484 6068 -291 805 147 7 0 chr4 4793345 4793481 -179495181 - AluSg/x SINE Alu 0 310 174 2161 123 3 3 chr4 4793558 4793851 -179494811 + AluSx SINE Alu 1 293 -19 2464 93 0 0 chr4 4793880 4794190 -179494472 + AluY SINE Alu 1 310 -1 2002 118 27 0 chr4 4794282 4794578 -179494084 - AluSx SINE Alu -8 304 1 396 294 28 28 chr4 4795234 4795411 -179493251 - MER104 DNA MER2_type -3 177 1 286 260 106 10 chr4 4795417 4795521 -179493141 + MIR SINE MIR 32 145 -117 1469 205 26 10 chr4 4795528 4795830 -179492832 + AluJo SINE Alu 1 307 -5 2057 98 60 0 chr4 4796967 4797252 -179491410 - AluSp SINE Alu -9 304 3 2107 92 55 0 chr4 4797294 4797587 -179491075 - AluY SINE Alu -2 309 1 874 212 106 32 chr4 4797595 4797878 -179490784 - L1MB3 LINE L1 -1 6182 5879 338 297 137 17 chr4 4798127 4798302 -179490360 + MIR SINE MIR 51 246 -16 2514 79 0 0 chr4 4798357 4798660 -179490002 - AluY SINE Alu -8 303 1 317 297 19 26 chr4 4798660 4798815 -179489847 - L1MEd LINE L1 -4846 1464 1311 421 282 89 81 chr4 4799277 4799970 -179488692 - L1MEd LINE L1 -4864 1255 580 2269 92 0 0 chr4 4800220 4800504 -179488158 + AluSc SINE Alu 5 288 -21 2044 196 56 0 chr4 4800746 4801139 -179487523 + MER47B DNA MER2_type 2 416 -2 1853 90 98 22 chr4 4801172 4801449 -179487213 + AluSg SINE Alu 6 303 -7 761 278 86 30 chr4 4801592 4802183 -179486479 - L1M4 LINE L1 -2202 3944 3321 2304 121 0 0 chr4 4802290 4802587 -179486075 + AluSg SINE Alu 1 297 -13 593 228 152 0 chr4 4802636 4802794 -179485868 - MER21B LTR ERV1 -677 186 5 635 179 0 34 chr4 4802853 4802970 -179485692 + FLAM_C SINE Alu 7 119 -24 1218 168 5 37 chr4 4804354 4804568 -179484094 + AluJo SINE Alu 1 207 -105 248 83 28 0 chr4 4804624 4804660 -179484002 + MER4A LTR ERV1 261 297 -367 1099 413 72 7 chr4 4804669 4804826 -179483836 - AluSx SINE Alu 0 312 167 1595 156 0 4 chr4 4804826 4805063 -179483599 - AluSx SINE Alu -76 236 1 1099 413 72 7 chr4 4805063 4805198 -179483464 - AluSx SINE Alu -145 167 1 842 189 12 0 chr4 4805198 4805367 -179483295 + L1M3 LINE L1 5625 5795 -388 248 141 188 0 chr4 4805372 4805436 -179483226 + L1MB3 LINE L1 6101 6176 -7 2349 148 69 29 chr4 4805440 4805920 -179482742 + L1MB8 LINE L1 5679 6177 -1 2427 86 3 0 chr4 4806203 4806507 -179482155 + AluSc SINE Alu 1 305 -4 371 357 30 0 chr4 4806608 4806807 -179481855 + L1MC/D LINE L1 5437 5641 -2167 301 381 81 6 chr4 4806824 4806849 -179481813 - L1MC4a LINE L1 -1901 5907 5885 2287 72 48 3 chr4 4806849 4807140 -179481522 - AluY SINE Alu -7 304 1 301 381 81 6 chr4 4807140 4807287 -179481375 - L1MC4a LINE L1 -1923 5885 5722 720 200 8 0 chr4 4807307 4807432 -179481230 - FLAM_A SINE Alu -7 126 1 2255 77 42 3 chr4 4807439 4807726 -179480936 - AluY SINE Alu -13 298 1 925 151 0 0 chr4 4807913 4808039 -179480623 + FLAM_C SINE Alu 4 129 -14 693 246 111 63 chr4 4808639 4808752 -179479910 - L2 LINE L2 -4 3309 3203 1876 122 48 56 chr4 4808752 4809130 -179479532 + THE1C LTR MaLR 1 375 0 693 246 111 63 chr4 4809130 4809350 -179479312 - L2 LINE L2 -110 3203 2960 214 281 112 0 chr4 4809837 4809926 -179478736 + L2 LINE L2 2315 2413 -901 209 333 16 0 chr4 4809927 4809990 -179478672 - L2 LINE L2 0 3272 3209 8239 150 71 11 chr4 4810613 4812114 -179476548 + MER52A LTR ERV1 90 1755 0 221 329 12 0 chr4 4812658 4812743 -179475919 - L2 LINE L2 -2 3270 3185 1277 178 15 118 chr4 4812968 4813145 -179475517 - AluJb SINE Alu -5 297 103 2366 64 4 4 chr4 4813145 4813426 -179475236 - AluSp SINE Alu -32 281 1 2109 116 0 44 chr4 4813430 4813611 -179475051 - AluSx SINE Alu -7 305 142 2348 87 17 3 chr4 4813611 4813909 -179474753 - AluY SINE Alu -9 302 1 2109 116 0 44 chr4 4813909 4814046 -179474616 - AluSx SINE Alu -170 142 1 1277 178 15 118 chr4 4814046 4814194 -179474468 - AluJb SINE Alu -202 100 1 344 257 0 18 chr4 4814837 4814946 -179473716 + L1 LINE L1 5174 5280 -866 1047 264 41 32 chr4 4814969 4815381 -179473281 + MLT1J1 LTR MaLR 68 446 0 2119 127 6 13 chr4 4815918 4816233 -179472429 + AluSp SINE Alu 1 313 0 490 133 20 10 chr4 4816318 4816416 -179472246 - LTR54 LTR ERV1 -2 508 410 1250 171 46 0 chr4 4816416 4816633 -179472029 + AluJo SINE Alu 86 312 0 216 158 0 0 chr4 4816642 4816680 -179471982 + GA-rich Low_complexity Low_complexity 1 38 0 1347 136 62 9 chr4 4816680 4817039 -179471623 - LTR54 LTR ERV1 -94 413 1 2413 77 0 0 chr4 4817548 4817834 -179470828 - AluSc SINE Alu -23 286 1 353 209 97 75 chr4 4817996 4818065 -179470597 + MLT1J2 LTR MaLR 59 125 -325 579 150 18 9 chr4 4818065 4818178 -179470484 + L1PB2 LINE L1 6037 6150 -1 353 209 97 75 chr4 4818178 4818242 -179470420 + MLT1J2 LTR MaLR 125 195 -255 332 233 125 33 chr4 4818261 4818381 -179470281 + L2 LINE L2 3141 3271 -1 198 309 21 32 chr4 4818379 4818473 -179470189 - MIR SINE MIR -157 105 13 * 192 40 0 0 chr4 4818473 4818498 -179470164 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 699 222 50 20 chr4 4818498 4818696 -179469966 - L2 LINE L2 -13 3300 3097 731 167 24 0 chr4 4818711 4818837 -179469825 + FLAM_A SINE Alu 1 129 -4 1145 305 206 7 chr4 4818907 4819752 -179468910 - L2 LINE L2 -408 2906 1894 2006 158 0 0 chr4 4819822 4820113 -179468549 + AluJb SINE Alu 1 291 -21 2023 188 34 36 chr4 4820779 4821247 -179467415 + MLT1C LTR MaLR 1 467 0 249 232 0 18 chr4 4821369 4821425 -179467237 - L2 LINE L2 0 3313 3259 2297 84 0 10 chr4 4821887 4822183 -179466479 + AluY SINE Alu 1 293 -18 2381 88 0 0 chr4 4822185 4822479 -179466183 - AluSc SINE Alu -15 294 1 1681 145 16 46 chr4 4822876 4823180 -179465482 + AluJo SINE Alu 1 295 -17 2543 80 3 3 chr4 4823180 4823514 -179465148 + AluSp SINE Alu 1 334 0 539 172 0 0 chr4 4823518 4823605 -179465057 + AluS SINE Alu 2 88 -225 372 367 50 10 chr4 4824130 4824329 -179464333 + L2 LINE L2 3107 3313 0 285 191 0 16 chr4 4824373 4824436 -179464226 + LTR67 LTR ERVL 457 518 -39 2271 77 7 24 chr4 4824766 4825063 -179463599 + AluSp SINE Alu 1 292 -21 2265 113 10 3 chr4 4825157 4825459 -179463203 + AluSx SINE Alu 1 304 -8 2026 164 28 3 chr4 4825590 4825944 -179462718 - MLT1A1 LTR MaLR -2 363 1 2563 50 3 0 chr4 4826425 4826724 -179461938 - AluY SINE Alu -11 300 1 573 142 31 63 chr4 4827159 4827286 -179461376 - FLAM_A SINE Alu -10 132 10 3350 80 120 35 chr4 4827594 4828142 -179460520 - LTR61 LTR ERV1 0 595 1 244 196 0 0 chr4 4828930 4828976 -179459686 + (CCG)n Simple_repeat Simple_repeat 3 48 0 26 50 0 0 chr4 4829186 4829226 -179459436 + GC_rich Low_complexity Low_complexity 1 40 0 21 57 0 0 chr4 4829577 4829612 -179459050 + GC_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr4 4830173 4830202 -179458460 + AT_rich Low_complexity Low_complexity 1 29 0 280 273 13 0 chr4 4830228 4830305 -179458357 - MIR SINE MIR -129 133 56 225 237 0 0 chr4 4830548 4830607 -179458055 + (TTGGGG)n Simple_repeat Simple_repeat 5 63 0 264 333 69 7 chr4 4841051 4841195 -179447467 + MIR SINE MIR 108 260 -2 30639 110 13 60 chr4 4841286 4843454 -179445208 + L1PA7 LINE L1 9 2279 -3875 2427 75 0 3 chr4 4843454 4843749 -179444913 + AluY SINE Alu 1 294 -17 30639 110 13 60 chr4 4843749 4845745 -179442917 + L1PA7 LINE L1 2279 3745 -2409 2051 119 36 23 chr4 4845745 4846048 -179442614 + AluSc SINE Alu 3 309 0 30639 110 13 60 chr4 4846048 4848349 -179440313 + L1PA7 LINE L1 3745 6154 0 2334 85 0 0 chr4 4848388 4848716 -179439946 + AluSc SINE Alu 1 328 0 323 236 181 31 chr4 4849137 4849264 -179439398 + MIR SINE MIR 117 262 0 343 279 67 77 chr4 4849977 4850275 -179438387 - L1MC5 LINE L1 -151 7810 7516 312 294 80 73 chr4 4850279 4850554 -179438108 + HAL1 LINE L1 1914 2190 -317 270 167 56 11 chr4 4850554 4850644 -179438018 + (TAA)n Simple_repeat Simple_repeat 2 95 0 270 248 191 0 chr4 4850645 4850750 -179437912 - MIR SINE MIR -2 260 136 2311 104 0 7 chr4 4851019 4851318 -179437344 + AluSx SINE Alu 2 298 -14 2569 71 0 3 chr4 4851669 4851979 -179436683 - AluY SINE Alu -2 309 1 2333 98 0 0 chr4 4853990 4854285 -179434377 + AluSg SINE Alu 1 295 -15 188 225 197 14 chr4 4854910 4854981 -179433681 - MIR SINE MIR -89 119 36 999 181 166 30 chr4 4856905 4857170 -179431492 - AluJo SINE Alu 0 302 2 2135 101 10 7 chr4 4858168 4858464 -179430198 - AluSx SINE Alu -15 297 1 23 33 0 0 chr4 4858671 4858701 -179429961 + AT_rich Low_complexity Low_complexity 1 30 0 2273 94 7 0 chr4 4858999 4859298 -179429364 - AluSx SINE Alu -11 301 1 713 187 0 22 chr4 4859298 4859432 -179429230 - AluJo SINE Alu -171 141 11 209 186 0 0 chr4 4860209 4860252 -179428410 + CT-rich Low_complexity Low_complexity 1 43 0 1820 169 3 3 chr4 4861620 4861921 -179426741 + AluJb SINE Alu 1 301 -11 2238 93 0 0 chr4 4862369 4862660 -179426002 + AluSx SINE Alu 1 291 -21 182 149 43 21 chr4 4864252 4864299 -179424363 + MIR SINE MIR 173 220 -42 2271 98 0 0 chr4 4866417 4866712 -179421950 + AluSp SINE Alu 1 295 -18 552 268 91 0 chr4 4867274 4867494 -179421168 + Charlie5 DNA MER1_type 2361 2600 -12 246 305 73 24 chr4 4870437 4870519 -179418143 + L2 LINE L2 3179 3264 -49 1695 152 11 14 chr4 4872331 4872608 -179416054 + AluJo SINE Alu 16 291 -21 1963 75 101 0 chr4 4872608 4872875 -179415787 - AluSp SINE Alu -19 294 1 3341 143 118 33 chr4 4874649 4875286 -179413376 - LTR8 LTR ERV1 0 691 1 253 280 40 0 chr4 4875437 4875512 -179413150 + MLT2F LTR ERVL 54 131 -532 329 289 47 0 chr4 4875706 4875834 -179412828 + MLT2F LTR ERVL 421 554 -109 324 199 5 117 chr4 4876359 4876555 -179412107 + G-rich Low_complexity Low_complexity 3 176 0 558 91 26 0 chr4 4976555 4976632 -179312030 + AluJ/FRAM SINE Alu 224 302 -10 2123 99 7 30 chr4 4976634 4976769 -179311893 + AluSq SINE Alu 2 139 -174 2292 61 0 51 chr4 4976769 4977080 -179311582 + AluY SINE Alu 1 295 -16 2123 99 7 30 chr4 4977080 4977247 -179311415 + AluSq SINE Alu 139 297 -16 21 82 0 0 chr4 5033159 5033208 -179255454 + AT_rich Low_complexity Low_complexity 1 49 0 284 233 0 14 chr4 5033248 5033321 -179255341 + MIR SINE MIR 66 137 -125 315 239 53 80 chr4 5033475 5033588 -179255074 - L2 LINE L2 -11 3302 3193 1669 157 3 25 chr4 5034500 5034786 -179253876 + AluJb SINE Alu 1 280 -32 303 93 0 0 chr4 5034789 5034832 -179253830 + (GGGA)n Simple_repeat Simple_repeat 4 46 0 2268 88 20 0 chr4 5034836 5035131 -179253531 - AluSp SINE Alu -12 301 1 869 114 0 0 chr4 5035279 5035393 -179253269 - AluSp/q SINE Alu -25 288 175 296 272 60 87 chr4 5035396 5035835 -179252827 - L1M4 LINE L1 -2397 3749 3292 1723 151 28 14 chr4 5035863 5036148 -179252514 - AluJb SINE Alu -21 291 3 237 220 93 34 chr4 5036157 5036275 -179252387 - L1MC5 LINE L1 -30 7931 7807 358 245 101 52 chr4 5036284 5036611 -179252051 - L1M4 LINE L1 -2866 3280 2938 2062 130 13 3 chr4 5036642 5036943 -179251719 + AluSx SINE Alu 3 306 -6 2149 123 3 0 chr4 5036945 5037245 -179251417 + AluSx SINE Alu 1 301 -11 257 247 234 7 chr4 5037370 5037524 -179251138 - MER5A DNA MER1_type 0 189 1 1772 163 50 0 chr4 5038456 5038738 -179249924 - AluJb SINE Alu -16 296 1 2396 78 0 3 chr4 5040498 5040792 -179247870 - AluSc SINE Alu -14 295 3 2326 103 0 7 chr4 5040796 5041098 -179247564 - AluSx SINE Alu -12 300 1 22 0 0 0 chr4 5041102 5041124 -179247538 + AT_rich Low_complexity Low_complexity 1 22 0 260 222 0 16 chr4 5041656 5041719 -179246943 + (TATATG)n Simple_repeat Simple_repeat 2 63 0 573 285 88 55 chr4 5041736 5041979 -179246683 + L1M4 LINE L1 2658 2891 -3255 1915 117 81 0 chr4 5041979 5042252 -179246410 - AluSx SINE Alu -17 295 1 573 285 88 55 chr4 5042252 5042279 -179246383 + L1M4 LINE L1 2891 2916 -3230 2316 97 0 0 chr4 5042279 5042601 -179246061 + AluSx SINE Alu 1 312 0 573 285 88 55 chr4 5042601 5042767 -179245895 + L1M4 LINE L1 2916 3075 -3071 2575 59 0 3 chr4 5042767 5043071 -179245591 + AluY SINE Alu 1 303 -8 573 285 88 55 chr4 5043071 5043114 -179245548 + L1M4 LINE L1 3075 3115 -3031 1744 183 0 13 chr4 5043114 5043426 -179245236 + AluJb SINE Alu 1 308 -4 573 285 88 55 chr4 5043426 5043446 -179245216 + L1M4 LINE L1 3110 3178 -2963 2388 100 0 3 chr4 5043446 5043757 -179244905 + AluSg SINE Alu 1 310 0 624 112 0 84 chr4 5043767 5043910 -179244752 + AluSq/x SINE Alu 3 133 -180 2199 136 3 0 chr4 5043912 5044222 -179244440 + AluJb SINE Alu 1 311 -1 1558 243 68 56 chr4 5044234 5044999 -179243663 - L1M4 LINE L1 -1057 5089 4316 1918 145 13 7 chr4 5045358 5045662 -179243000 - AluSx SINE Alu -4 308 3 251 83 0 0 chr4 5045677 5045713 -179242949 - Charlie1 DNA MER1_type -399 2362 2327 705 182 0 7 chr4 5045717 5045865 -179242797 - L1MB3 LINE L1 -1 6182 6036 1047 164 30 0 chr4 5045998 5046163 -179242499 + AluJo SINE Alu 120 289 -23 359 285 99 90 chr4 5046316 5046748 -179241914 - L2 LINE L2 -3 3310 2875 758 248 65 70 chr4 5046964 5047187 -179241475 + L2 LINE L2 1942 2165 -1149 1386 76 168 0 chr4 5047187 5047384 -179241278 + MER30 DNA MER1_type 1 230 0 758 248 65 70 chr4 5047384 5047439 -179241223 + L2 LINE L2 2165 2219 -1095 592 250 65 6 chr4 5047439 5047607 -179241055 + MER5B DNA MER1_type 1 178 0 758 248 65 70 chr4 5047607 5047755 -179240907 + L2 LINE L2 2219 2367 -947 401 139 97 14 chr4 5047851 5047923 -179240739 + AluJ/FLAM SINE Alu 5 82 -220 529 293 33 53 chr4 5048003 5048303 -179240359 + L2 LINE L2 2848 3141 -172 643 229 204 10 chr4 5048308 5048509 -179240153 + MIR SINE MIR 21 260 -2 292 303 115 0 chr4 5048528 5048650 -179240012 + L2 LINE L2 3178 3313 0 272 143 41 0 chr4 5049605 5049654 -179239008 - Alu SINE Alu -8 294 244 309 252 96 35 chr4 5050243 5050358 -179238304 + MIR SINE MIR 112 233 -29 627 226 15 0 chr4 5050380 5050513 -179238149 - FLAM_C SINE Alu -7 136 2 593 274 137 5 chr4 5050743 5050947 -179237715 + MIR SINE MIR 32 262 0 1621 172 11 0 chr4 5051603 5051864 -179236798 - AluJo SINE Alu -20 292 29 2355 102 0 3 chr4 5052009 5052312 -179236350 + AluSg SINE Alu 1 302 -8 2239 128 3 0 chr4 5052330 5052636 -179236026 + AluSx SINE Alu 1 307 -5 546 251 88 42 chr4 5052689 5053019 -179235643 + L1MEc LINE L1 1287 1631 -4765 752 130 9 17 chr4 5053033 5053148 -179235514 + AluJb SINE Alu 5 118 -194 22 0 0 0 chr4 5053148 5053170 -179235492 + AT_rich Low_complexity Low_complexity 1 22 0 305 100 0 0 chr4 5053188 5053228 -179235434 - AluSp SINE Alu -124 179 140 1817 161 10 3 chr4 5053231 5053522 -179235140 + AluJb SINE Alu 11 303 -9 322 190 0 0 chr4 5053526 5053584 -179235078 + FAM SINE Alu 120 177 -2 725 267 91 64 chr4 5053951 5053970 -179234692 + L1MEc LINE L1 2298 2315 -3900 1656 206 88 30 chr4 5053970 5054445 -179234217 + MLT1D LTR MaLR 3 505 0 725 267 91 64 chr4 5054445 5054865 -179233797 + L1MEc LINE L1 2315 2722 -3493 213 65 0 0 chr4 5054865 5054896 -179233766 + (CTTG)n Simple_repeat Simple_repeat 2 32 0 2110 120 0 7 chr4 5054897 5055180 -179233482 - AluSx SINE Alu -31 281 1 725 267 91 64 chr4 5055180 5055316 -179233346 + L1MEc LINE L1 2722 2853 -3362 2215 115 0 0 chr4 5055316 5055612 -179233050 + AluSq SINE Alu 1 296 -17 725 267 91 64 chr4 5055612 5055816 -179232846 + L1MEc LINE L1 2853 3102 -3113 2155 107 10 3 chr4 5055822 5056112 -179232550 + AluSx SINE Alu 10 301 -11 1230 182 5 0 chr4 5056287 5056485 -179232177 + AluJb SINE Alu 93 291 -21 1437 228 100 20 chr4 5056536 5056935 -179231727 - MLT1C LTR MaLR 0 467 37 563 298 76 58 chr4 5056965 5057196 -179231466 - MER57-int LTR ERV1 -1796 2851 2607 2544 50 0 13 chr4 5057196 5057498 -179231164 + AluSc SINE Alu 1 298 -11 563 298 76 58 chr4 5057498 5057699 -179230963 - MER57-int LTR ERV1 -2040 2607 2411 2451 81 0 0 chr4 5057744 5058041 -179230621 + AluSg1 SINE Alu 1 297 -12 621 247 98 60 chr4 5058051 5058156 -179230506 - MER57-int LTR ERV1 -7238 299 199 2457 63 0 3 chr4 5058156 5058456 -179230206 - AluY SINE Alu -12 299 1 621 247 98 60 chr4 5058456 5058585 -179230077 - MER57-int LTR ERV1 -7338 199 56 863 102 0 0 chr4 5058695 5058810 -179229852 + AluJb SINE Alu 172 280 -32 231 36 0 0 chr4 5058810 5058838 -179229824 + (CAAT)n Simple_repeat Simple_repeat 2 29 0 1733 173 3 10 chr4 5058841 5059147 -179229515 + AluJo SINE Alu 1 304 -8 1564 197 62 75 chr4 5059153 5059477 -179229185 + MSTD LTR MaLR 1 321 -75 2277 90 3 0 chr4 5059477 5059787 -179228875 + AluY SINE Alu 1 311 0 1564 197 62 75 chr4 5059787 5059863 -179228799 + MSTD LTR MaLR 321 396 0 2238 96 0 0 chr4 5060013 5060306 -179228356 + AluSx SINE Alu 1 293 -19 2972 233 170 101 chr4 5060678 5060710 -179227952 - HAL1 LINE L1 0 2507 2479 1860 168 23 13 chr4 5060710 5061019 -179227643 - AluJo SINE Alu 0 312 1 2972 233 170 101 chr4 5061019 5061848 -179226814 - HAL1 LINE L1 -28 2479 1709 2102 118 0 3 chr4 5061848 5062144 -179226518 - AluSq SINE Alu -18 295 1 2972 233 170 101 chr4 5062144 5062296 -179226366 - HAL1 LINE L1 -798 1709 1569 2173 101 34 0 chr4 5062296 5062592 -179226070 - AluSx SINE Alu -6 306 1 2972 233 170 101 chr4 5062592 5062749 -179225913 - HAL1 LINE L1 -938 1569 1424 854 146 0 0 chr4 5062749 5062879 -179225783 - FLAM_A SINE Alu -5 137 8 2972 233 170 101 chr4 5062879 5063680 -179224982 - HAL1 LINE L1 -1083 1424 258 231 239 28 28 chr4 5065189 5065260 -179223402 - L2 LINE L2 0 3272 3202 248 286 32 56 chr4 5065296 5065422 -179223240 + L2 LINE L2 2369 2491 -823 1829 204 34 50 chr4 5065425 5065930 -179222732 - MLT1D LTR MaLR 0 505 9 267 348 27 27 chr4 5065943 5066055 -179222607 + L2 LINE L2 2502 2613 -701 618 256 133 5 chr4 5066055 5066321 -179222341 + L2 LINE L2 2726 3029 -284 1828 117 10 52 chr4 5066544 5066851 -179221811 + AluJb SINE Alu 1 294 -18 2331 64 7 7 chr4 5066855 5067152 -179221510 + AluY SINE Alu 1 297 -14 1561 87 5 5 chr4 5067811 5068018 -179220644 + AluSg/x SINE Alu 82 288 -24 211 221 29 0 chr4 5068107 5068175 -179220487 + (CGGGG)n Simple_repeat Simple_repeat 4 73 0 1014 87 25 6 chr4 5068962 5069123 -179219539 - pTR5 LTR ERV1 -2046 392 229 * 2850 116 112 71 chr4 5069100 5070154 -179218508 + pTR5 LTR ERV1 970 2437 -1 344 339 23 18 chr4 5070224 5070395 -179218267 + L2 LINE L2 2848 3019 -294 248 330 62 0 chr4 5070863 5070975 -179217687 - L2 LINE L2 -296 2976 2858 264 334 85 5 chr4 5070980 5071180 -179217482 - L2 LINE L2 -257 3015 2804 1246 221 202 12 chr4 5071480 5071954 -179216708 - MER77 LTR ERV1 -15 547 1 2111 127 13 0 chr4 5071991 5072290 -179216372 + AluSx SINE Alu 1 303 -9 213 39 0 0 chr4 5072302 5072328 -179216334 + (GGGA)n Simple_repeat Simple_repeat 3 28 0 2311 89 0 0 chr4 5072493 5072796 -179215866 - AluSx SINE Alu -9 303 1 658 237 74 86 chr4 5073026 5073085 -179215577 + MER46C DNA MER2_type 2 60 -278 1769 167 13 7 chr4 5073085 5073390 -179215272 - AluJo SINE Alu -5 307 1 658 237 74 86 chr4 5073390 5073566 -179215096 + MER46C DNA MER2_type 60 237 -101 2592 222 38 11 chr4 5073566 5074092 -179214570 - MLT1F LTR MaLR -2 540 1 658 237 74 86 chr4 5074092 5074146 -179214516 + MER46C DNA MER2_type 237 290 -48 2106 93 3 7 chr4 5074146 5074436 -179214226 + AluSx SINE Alu 1 289 -23 270 81 0 0 chr4 5074437 5074474 -179214188 + (CAATA)n Simple_repeat Simple_repeat 1 37 0 658 237 74 86 chr4 5074474 5074517 -179214145 + MER46C DNA MER2_type 289 334 -4 234 253 46 58 chr4 5074531 5074618 -179214044 - MIR SINE MIR -67 141 56 210 301 49 77 chr4 5074689 5074832 -179213830 - MIR SINE MIR -24 238 100 2287 72 3 10 chr4 5075288 5075594 -179213068 + AluSq SINE Alu 9 312 -1 225 199 21 28 chr4 5075962 5076103 -179212559 + (CGGGG)n Simple_repeat Simple_repeat 5 144 0 22 35 0 0 chr4 5076144 5076173 -179212489 + GC_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr4 5076178 5076209 -179212453 + GC_rich Low_complexity Low_complexity 1 31 0 1785 158 10 3 chr4 5077484 5077782 -179210880 + AluJb SINE Alu 1 300 -12 2426 54 3 0 chr4 5077795 5078092 -179210570 + AluY SINE Alu 3 300 -11 507 321 124 57 chr4 5078361 5078626 -179210036 - L1ME4a LINE L1 -8 6113 5831 1961 142 0 16 chr4 5079034 5079350 -179209312 - AluJo SINE Alu 0 312 2 1534 162 0 87 chr4 5079407 5079740 -179208922 - AluJo SINE Alu -2 310 7 2182 103 3 3 chr4 5080341 5080684 -179207978 - AluSg SINE Alu 0 343 1 1895 97 19 11 chr4 5080732 5080999 -179207663 - AluJo SINE Alu -23 289 21 343 187 1 0 chr4 5081001 5081074 -179207588 + MLT1C LTR MaLR 305 372 -2 575 118 0 32 chr4 5081736 5081829 -179206833 + FLAM_A SINE Alu 45 134 -8 432 186 58 0 chr4 5081856 5081942 -179206720 - AluJb SINE Alu -21 291 201 * 765 218 0 0 chr4 5081934 5082067 -179206595 + AluJo/FRAM SINE Alu 153 285 -27 356 0 23 0 chr4 5082067 5082111 -179206551 + (TAA)n Simple_repeat Simple_repeat 2 46 0 801 172 60 0 chr4 5082406 5082540 -179206122 + AluJb SINE Alu 1 142 -170 183 274 24 113 chr4 5082559 5082683 -179205979 + L2 LINE L2 3015 3127 -145 228 67 0 0 chr4 5083987 5084017 -179204645 + (TG)n Simple_repeat Simple_repeat 1 30 0 357 356 0 6 chr4 5084670 5084847 -179203815 + (CA)n Simple_repeat Simple_repeat 1 176 0 180 339 76 8 chr4 5084941 5085059 -179203603 - MIR SINE MIR -34 228 103 216 179 0 0 chr4 5085175 5085214 -179203448 - MIR SINE MIR -157 105 67 1278 269 75 18 chr4 5089740 5090182 -179198480 + MLT1C LTR MaLR 1 467 0 214 329 13 0 chr4 5091581 5091657 -179197005 + (GGGTG)n Simple_repeat Simple_repeat 4 80 0 194 231 0 0 chr4 5092131 5092170 -179196492 + MIR SINE MIR 109 147 -61 273 169 70 28 chr4 5094640 5094711 -179193951 + MIR SINE MIR 48 121 -87 314 356 0 11 chr4 5095507 5095597 -179193065 + L1MC4 LINE L1 6615 6703 -1339 * 378 260 0 13 chr4 5095517 5095618 -179193044 - L1MCa LINE L1 -1339 6983 1996 367 356 0 0 chr4 5095599 5095689 -179192973 + L1MC4 LINE L1 6614 6703 -1339 * 403 311 0 0 chr4 5095681 5095771 -179192891 - L1MC4 LINE L1 -1339 6703 6614 420 20 0 0 chr4 5095773 5095822 -179192840 + (CA)n Simple_repeat Simple_repeat 2 50 0 2032 113 18 0 chr4 5095826 5096110 -179192552 - AluSx SINE Alu -23 289 1 1966 132 7 0 chr4 5096112 5096401 -179192261 - AluSx SINE Alu -21 291 1 246 216 68 27 chr4 5102041 5102115 -179186547 - MIR SINE MIR -97 165 89 483 87 87 0 chr4 5102743 5102812 -179185850 + AluSg SINE Alu 2 76 -233 344 358 37 10 chr4 5103133 5103306 -179185356 - MIR SINE MIR -61 147 7 233 154 0 22 chr4 5104186 5104248 -179184414 - MIR SINE MIR -114 148 90 286 191 0 43 chr4 5105167 5105261 -179183401 + (CCCCG)n Simple_repeat Simple_repeat 2 91 0 571 302 208 12 chr4 5108261 5108779 -179179883 + L2 LINE L2 2414 3033 -280 1575 127 89 55 chr4 5108866 5109157 -179179505 - AluJb SINE Alu -7 305 5 1648 98 9 0 chr4 5112041 5112265 -179176397 + AluSg SINE Alu 84 309 -1 961 184 107 8 chr4 5112274 5112518 -179176144 - MER57A LTR ERV1 -4 399 132 270 284 0 0 chr4 5112626 5112700 -179175962 - MER57A LTR ERV1 -288 115 42 888 301 17 23 chr4 5112712 5113064 -179175598 - MER57-int LTR ERV1 -394 7143 6794 2169 101 10 0 chr4 5113150 5113456 -179175206 + AluSx SINE Alu 1 309 -3 1201 131 0 5 chr4 5113467 5113666 -179174996 + L1PBa LINE L1 1 198 -6665 * 9929 95 47 16 chr4 5113662 5115814 -179172848 + L1PBa LINE L1 995 3404 -3458 507 141 10 20 chr4 5115814 5115913 -179172749 + MER4A LTR ERV1 1 98 -566 * 1552 131 3 83 chr4 5115908 5116289 -179172373 + MER4A LTR ERV1 256 664 0 4579 131 86 78 chr4 5116292 5116947 -179171715 + MER4A-int LTR ERV1 1 650 -4365 351 0 0 0 chr4 5116947 5116986 -179171676 + (CA)n Simple_repeat Simple_repeat 1 39 0 4579 131 86 78 chr4 5116986 5117076 -179171586 + MER4A-int LTR ERV1 650 738 -4277 1902 81 0 0 chr4 5117076 5117312 -179171350 - AluSx SINE Alu -76 236 1 4579 131 86 78 chr4 5117312 5117732 -179170930 + MER4A-int LTR ERV1 738 1154 -3861 2365 97 0 0 chr4 5117732 5118041 -179170621 - AluY SINE Alu -2 309 1 4579 131 86 78 chr4 5118041 5118121 -179170541 + MER4A-int LTR ERV1 1154 721 -4294 2129 130 0 3 chr4 5118121 5118421 -179170241 - AluSx SINE Alu -13 299 1 4579 131 86 78 chr4 5118421 5118487 -179170175 + MER4A-int LTR ERV1 720 784 -4231 1599 69 15 0 chr4 5118513 5118716 -179169946 + AluSq SINE Alu 1 206 -107 528 128 0 11 chr4 5118727 5118821 -179169841 + MER4-int LTR ERV1 3961 4053 -2545 2015 192 39 94 chr4 5118821 5118915 -179169747 + LTR9 LTR ERV1 1 99 -513 2211 128 0 0 chr4 5118915 5119227 -179169435 + AluSq SINE Alu 1 312 -1 2015 192 39 94 chr4 5119227 5119768 -179168894 + LTR9 LTR ERV1 99 601 -11 4442 77 42 32 chr4 5119771 5120204 -179168458 + MER4-int LTR ERV1 4050 4496 -2102 2122 138 0 6 chr4 5120204 5120516 -179168146 + AluSx SINE Alu 3 312 0 4442 77 42 32 chr4 5120516 5120837 -179167825 + MER4-int LTR ERV1 4496 4812 -1786 2362 93 0 0 chr4 5120837 5121148 -179167514 + AluY SINE Alu 1 311 0 2210 120 3 0 chr4 5121353 5121653 -179167009 + AluSx SINE Alu 1 301 -11 1641 154 50 0 chr4 5121693 5121973 -179166689 + AluJo SINE Alu 8 301 -11 2291 100 0 0 chr4 5122015 5122316 -179166346 - AluSx SINE Alu -11 301 1 488 252 8 15 chr4 5122512 5122643 -179166019 - MER57-int LTR ERV1 -1347 6190 6061 851 270 34 78 chr4 5122669 5122762 -179165900 + L1ME3A LINE L1 5665 5761 -409 1282 97 126 14 chr4 5122762 5122969 -179165693 + MER30 DNA MER1_type 1 230 0 851 270 34 78 chr4 5122969 5123404 -179165258 + L1ME3A LINE L1 5761 6170 0 1806 114 64 0 chr4 5124185 5124466 -179164196 + AluSx SINE Alu 1 299 -13 255 239 0 5 chr4 5124642 5124707 -179163955 + MIR3 SINE MIR 92 156 -52 325 176 54 0 chr4 5124944 5125018 -179163644 - MIR SINE MIR -87 121 44 203 271 0 0 chr4 5125014 5125062 -179163600 + MIR SINE MIR 108 155 -107 * 2228 100 0 3 chr4 5125587 5125896 -179162766 + AluSx SINE Alu 1 308 -4 250 320 82 0 chr4 5126989 5127086 -179161576 + MIR SINE MIR 2 106 -156 247 264 0 0 chr4 5127848 5127901 -179160761 + MIR SINE MIR 94 146 -62 811 165 0 8 chr4 5128074 5128207 -179160455 + FLAM_C SINE Alu 1 132 -1 212 290 0 0 chr4 5128281 5128343 -179160319 + G-rich Low_complexity Low_complexity 3 64 0 2125 119 0 3 chr4 5130850 5131152 -179157510 + AluSx SINE Alu 1 301 -11 195 42 0 0 chr4 5133294 5133318 -179155344 + (GGGA)n Simple_repeat Simple_repeat 4 27 0 183 80 0 0 chr4 5133439 5133464 -179155198 + (GGATG)n Simple_repeat Simple_repeat 3 27 0 273 302 0 0 chr4 5134344 5134430 -179154232 + (CA)n Simple_repeat Simple_repeat 1 86 0 231 282 0 0 chr4 5134441 5134590 -179154072 + (CA)n Simple_repeat Simple_repeat 2 150 0 409 306 0 16 chr4 5134662 5134845 -179153817 + (CA)n Simple_repeat Simple_repeat 1 180 0 338 173 29 29 chr4 5134858 5135031 -179153631 + (CA)n Simple_repeat Simple_repeat 2 174 0 205 199 28 28 chr4 5135102 5135243 -179153419 + (CA)n Simple_repeat Simple_repeat 2 142 0 271 178 30 30 chr4 5135878 5136013 -179152649 + (TG)n Simple_repeat Simple_repeat 2 136 0 260 274 9 19 chr4 5136026 5136132 -179152530 + (TG)n Simple_repeat Simple_repeat 2 106 0 1037 127 13 6 chr4 5138953 5139111 -179149551 + AluSg/x SINE Alu 135 293 -17 1258 139 42 14 chr4 5139118 5139322 -179149340 + AluJb SINE Alu 87 299 -13 2161 114 10 0 chr4 5139322 5139629 -179149033 + AluSx SINE Alu 1 310 -2 1258 139 42 14 chr4 5139629 5139640 -179149022 + AluJb SINE Alu 299 308 -4 1718 140 66 14 chr4 5139642 5139928 -179148734 + AluJb SINE Alu 1 301 -11 1247 153 0 23 chr4 5142047 5142263 -179146399 + AluJo SINE Alu 87 297 -15 1403 166 50 13 chr4 5142264 5142565 -179146097 + AluJo SINE Alu 1 312 0 44 75 0 0 chr4 5143165 5143258 -179145404 + GC_rich Low_complexity Low_complexity 1 93 0 22 35 0 0 chr4 5143332 5143361 -179145301 + GC_rich Low_complexity Low_complexity 1 29 0 3074 188 57 7 chr4 5144487 5145143 -179143519 + L1M4 LINE L1 3573 4272 -1874 2068 82 53 4 chr4 5145143 5145424 -179143238 + AluSq SINE Alu 1 295 -18 3074 188 57 7 chr4 5145424 5145507 -179143155 + L1M4 LINE L1 4272 4349 -1797 2200 106 0 3 chr4 5145511 5145812 -179142850 + AluSg SINE Alu 11 310 0 2178 128 3 0 chr4 5145822 5146128 -179142534 + AluSx SINE Alu 1 307 -5 445 282 75 33 chr4 5146159 5146521 -179142141 + L1MEc LINE L1 1265 1641 -4755 764 143 8 17 chr4 5146521 5146640 -179142022 + AluJb SINE Alu 1 118 -194 23 0 0 0 chr4 5146640 5146663 -179141999 + AT_rich Low_complexity Low_complexity 1 23 0 280 100 0 0 chr4 5146681 5146721 -179141941 - AluSp SINE Alu -124 179 140 1780 161 10 3 chr4 5146724 5147015 -179141647 + AluJb SINE Alu 11 303 -9 290 190 0 0 chr4 5147019 5147077 -179141585 + FAM SINE Alu 120 177 -2 365 383 83 31 chr4 5147086 5147412 -179141250 + L1MEc LINE L1 1918 2260 -4136 492 309 87 35 chr4 5147422 5147463 -179141199 + L1MEc LINE L1 2272 2309 -3906 1755 206 88 30 chr4 5147463 5147938 -179140724 + MLT1D LTR MaLR 3 505 0 492 309 87 35 chr4 5147938 5148358 -179140304 + L1MEc LINE L1 2309 2706 -3509 180 97 0 0 chr4 5148358 5148389 -179140273 + (CTTG)n Simple_repeat Simple_repeat 2 32 0 2037 120 0 7 chr4 5148390 5148673 -179139989 - AluSx SINE Alu -31 281 1 492 309 87 35 chr4 5148673 5148809 -179139853 + L1MEc LINE L1 2706 2833 -3382 2159 128 0 0 chr4 5148809 5149121 -179139541 + AluSq SINE Alu 1 312 -1 492 309 87 35 chr4 5149121 5149309 -179139353 + L1MEc LINE L1 2833 3102 -3113 2080 107 10 3 chr4 5149315 5149605 -179139057 + AluSx SINE Alu 10 301 -11 1129 165 17 48 chr4 5149788 5150018 -179138644 + AluJo SINE Alu 82 304 -8 1404 123 0 5 chr4 5150186 5150574 -179138088 + AluSg/x SINE Alu 102 488 0 2330 70 20 0 chr4 5150577 5150875 -179137787 + AluSp SINE Alu 1 304 -9 272 247 34 22 chr4 5151395 5151484 -179137178 - MIR SINE MIR -105 157 68 822 210 13 6 chr4 5151492 5151649 -179137013 + FRAM SINE Alu 1 150 -26 1983 170 29 52 chr4 5151649 5151843 -179136819 - L1MB7 LINE L1 -57 6127 5930 2113 104 6 41 chr4 5151843 5151988 -179136674 + AluSx SINE Alu 1 150 -162 2487 45 0 0 chr4 5151988 5152280 -179136382 + AluY SINE Alu 1 292 -19 2113 104 6 41 chr4 5152280 5152450 -179136212 + AluSx SINE Alu 150 305 -7 1983 170 29 52 chr4 5152450 5152737 -179135925 - L1MB7 LINE L1 -254 5930 5657 245 196 216 21 chr4 5153465 5153562 -179135100 - MIR SINE MIR 0 262 147 417 313 89 0 chr4 5153583 5153762 -179134900 + L1MC/D LINE L1 5505 5699 -422 404 301 43 0 chr4 5153773 5153936 -179134726 + L1MC5 LINE L1 5567 5736 -2072 1395 221 3 33 chr4 5153936 5154239 -179134423 + AluJo SINE Alu 1 294 -18 2222 105 7 0 chr4 5154486 5154781 -179133881 - AluSx SINE Alu -15 297 1 1582 150 6 27 chr4 5154795 5155151 -179133511 + MER4A LTR ERV1 257 663 -1 1873 108 75 0 chr4 5155290 5155568 -179133094 - AluSq SINE Alu -14 299 1 2421 70 0 6 chr4 5155568 5155879 -179132783 - AluY SINE Alu -1 310 1 600 210 148 31 chr4 5155879 5156041 -179132621 - AluJb SINE Alu -11 301 121 670 241 47 4 chr4 5156041 5156277 -179132385 + L1MC5 LINE L1 6985 7230 -731 588 244 189 13 chr4 5156324 5156706 -179131956 + L1MC5 LINE L1 7304 7752 -209 2425 52 0 0 chr4 5157344 5157633 -179131029 + AluSc SINE Alu 1 289 -20 180 218 36 0 chr4 5157701 5157756 -179130906 + L2 LINE L2 2950 3006 -266 297 255 21 7 chr4 5158532 5158677 -179129985 + (CCG)n Simple_repeat Simple_repeat 3 149 0 426 234 32 0 chr4 5159768 5159862 -179128800 + L1MB3 LINE L1 5392 5488 -686 696 191 28 7 chr4 5159862 5160003 -179128659 + BC200 scRNA scRNA 2 145 -55 2917 156 125 6 chr4 5160035 5160289 -179128373 + L1MB3 LINE L1 5478 5700 -483 2048 113 13 27 chr4 5160289 5160589 -179128073 - AluJo SINE Alu -3 309 14 2917 156 125 6 chr4 5160589 5160964 -179127698 + L1MB3 LINE L1 5700 6182 -1 235 83 0 0 chr4 5160968 5161004 -179127658 + Charlie1 DNA MER1_type 2327 2362 -399 1949 145 13 7 chr4 5161019 5161323 -179127339 + AluSx SINE Alu 3 308 -4 425 291 193 64 chr4 5161335 5161692 -179126970 + L1ME LINE L1 1893 2295 -4101 1829 237 88 50 chr4 5161692 5162460 -179126202 + L1ME LINE L1 4395 5133 -1098 2260 132 3 0 chr4 5162460 5162771 -179125891 - AluJb SINE Alu 0 312 1 1829 237 88 50 chr4 5162771 5162857 -179125805 + L1ME LINE L1 5133 5214 -1017 1600 187 17 27 chr4 5162857 5163151 -179125511 + AluJo SINE Alu 7 297 -15 1829 237 88 50 chr4 5163151 5163257 -179125405 + L1ME LINE L1 5214 5315 -916 1848 151 20 7 chr4 5163257 5163555 -179125107 + AluJb SINE Alu 11 312 0 1829 237 88 50 chr4 5163555 5163798 -179124864 + L1ME LINE L1 5315 5645 -586 918 139 0 21 chr4 5163850 5163994 -179124668 - AluJb SINE Alu -171 141 1 1699 143 3 44 chr4 5164093 5164430 -179124232 + AluSx SINE Alu 1 325 0 1966 145 10 19 chr4 5164459 5164770 -179123892 - AluJo SINE Alu 0 312 5 307 269 111 0 chr4 5164861 5164969 -179123693 - L2 LINE L2 -4 3309 3190 282 341 22 37 chr4 5165090 5165225 -179123437 - L3 LINE CR1 -22 1555 1423 340 305 130 11 chr4 5165313 5165490 -179123172 - L3 LINE CR1 -175 1402 1205 382 259 111 44 chr4 5165506 5165641 -179123021 + MIR SINE MIR 4 147 -115 2135 116 23 13 chr4 5165852 5166155 -179122507 - AluSx SINE Alu -6 306 1 885 153 0 29 chr4 5166182 5166319 -179122343 - FLAM_C SINE Alu 0 133 1 2244 99 3 7 chr4 5166614 5166917 -179121745 + AluY SINE Alu 1 302 -9 524 297 80 42 chr4 5166917 5167106 -179121556 - L1ME LINE L1 -696 5468 5288 2181 114 17 0 chr4 5167106 5167405 -179121257 - AluSx SINE Alu -8 304 1 524 297 80 42 chr4 5167405 5167485 -179121177 - L1ME LINE L1 -876 5288 5212 2035 131 10 10 chr4 5167485 5167782 -179120880 - AluSx SINE Alu -15 297 1 524 297 80 42 chr4 5167782 5168334 -179120328 - L1ME LINE L1 -952 5212 4615 2044 124 3 7 chr4 5168604 5168924 -179119738 + AluSx SINE Alu 1 319 0 1852 132 0 62 chr4 5168946 5169270 -179119392 + AluSx SINE Alu 1 305 0 388 260 149 22 chr4 5170643 5170824 -179117838 - L2 LINE L2 -1 3312 3109 2592 44 0 3 chr4 5171415 5171712 -179116950 + AluY SINE Alu 1 296 -15 188 323 127 61 chr4 5171829 5172340 -179116322 - L2 LINE L2 -1903 1411 867 741 172 112 0 chr4 5172835 5172969 -179115693 + FAM SINE Alu 1 149 -36 250 218 119 0 chr4 5173122 5173223 -179115439 + L1ME4a LINE L1 2929 3041 -3105 23 33 0 0 chr4 5173270 5173300 -179115362 + AT_rich Low_complexity Low_complexity 1 30 0 2458 82 0 0 chr4 5173354 5173659 -179115003 + AluY SINE Alu 1 305 -6 671 188 0 8 chr4 5173674 5173802 -179114860 + FRAM SINE Alu 49 175 -1 377 275 25 0 chr4 5173812 5173932 -179114730 + L1ME4a LINE L1 3850 3972 -2174 * 530 191 143 74 chr4 5173931 5174162 -179114500 + L1MC5 LINE L1 6907 7153 -808 2088 134 3 7 chr4 5174163 5174470 -179114192 + AluSx SINE Alu 1 306 -6 636 251 129 8 chr4 5175523 5175778 -179112884 + L1ME4a LINE L1 5488 5773 -348 443 208 135 79 chr4 5175894 5175946 -179112716 + L1ME4a LINE L1 5933 5981 -140 2427 99 0 3 chr4 5175946 5176258 -179112404 + AluSx SINE Alu 1 311 -1 443 208 135 79 chr4 5176258 5176383 -179112279 + L1ME4a LINE L1 5981 6120 -1 2727 48 0 0 chr4 5176551 5176862 -179111800 + AluY SINE Alu 1 311 0 1646 133 0 4 chr4 5177310 5177543 -179111119 + AluSx SINE Alu 1 232 -80 1244 99 0 0 chr4 5177543 5177695 -179110967 + AluSg/x SINE Alu 141 292 -20 293 340 30 10 chr4 5177882 5177982 -179110680 - L2 LINE L2 -32 3240 3139 577 269 159 28 chr4 5178166 5178530 -179110132 + L2 LINE L2 661 1072 -2242 848 161 0 0 chr4 5178558 5178682 -179109980 - FRAM SINE Alu -52 124 1 382 205 60 0 chr4 5178701 5178784 -179109878 + L2 LINE L2 3199 3286 -27 916 312 107 48 chr4 5178859 5179349 -179109313 + L2 LINE L2 2432 2962 -351 1814 132 70 0 chr4 5179349 5179622 -179109040 - AluJb SINE Alu -20 292 1 916 312 107 48 chr4 5179622 5179725 -179108937 + L2 LINE L2 2962 3058 -255 358 213 96 0 chr4 5179821 5179915 -179108747 + L1ME3 LINE L1 6053 6155 -7 219 304 101 0 chr4 5179939 5180018 -179108644 + L2 LINE L2 3215 3301 -12 2338 96 0 10 chr4 5180306 5180473 -179108189 - AluSx SINE Alu -12 300 136 2447 64 0 10 chr4 5180473 5180771 -179107891 - AluY SINE Alu -16 295 1 2338 96 0 10 chr4 5180771 5180906 -179107756 - AluSx SINE Alu -176 136 1 1596 184 0 7 chr4 5182100 5182377 -179106285 - AluJb SINE Alu -33 279 5 495 219 219 14 chr4 5182380 5182526 -179106136 - MER5A DNA MER1_type -3 186 11 2404 79 7 0 chr4 5182698 5183001 -179105661 - AluSx SINE Alu -7 305 1 1756 167 0 20 chr4 5183092 5183385 -179105277 - AluJo SINE Alu -12 300 14 1839 174 7 0 chr4 5184035 5184329 -179104333 + AluSx SINE Alu 2 297 -15 32 26 0 0 chr4 5184418 5184457 -179104205 + AT_rich Low_complexity Low_complexity 1 39 0 1640 183 7 14 chr4 5184466 5184761 -179103901 + AluJb SINE Alu 1 293 -19 492 215 51 67 chr4 5185177 5185372 -179103290 + L2 LINE L2 2550 2741 -573 485 155 21 70 chr4 5185380 5185522 -179103140 + L1MC5 LINE L1 7540 7674 -287 271 314 105 12 chr4 5185537 5185709 -179102953 + L1MC5 LINE L1 7720 7907 -54 22 35 0 0 chr4 5185856 5185885 -179102777 + AT_rich Low_complexity Low_complexity 1 29 0 2395 81 0 10 chr4 5186055 5186363 -179102299 + AluY SINE Alu 1 305 -6 2395 161 64 7 chr4 5187737 5188177 -179100485 + MLT1C LTR MaLR 1 465 -2 181 286 0 0 chr4 5188350 5188392 -179100270 + L2 LINE L2 3221 3262 -10 268 302 30 124 chr4 5188426 5188724 -179099938 + L2 LINE L2 2991 3260 -12 215 343 14 0 chr4 5189432 5189505 -179099157 - MIR SINE MIR -169 93 20 231 356 20 10 chr4 5189770 5189871 -179098791 - MIR SINE MIR -148 114 13 1890 150 3 3 chr4 5190233 5190520 -179098142 - AluJb SINE Alu -8 304 18 345 202 167 0 chr4 5190676 5190760 -179097902 + L2 LINE L2 3175 3272 0 2083 117 7 29 chr4 5190850 5191158 -179097504 + AluSx SINE Alu 1 301 -11 27 0 0 0 chr4 5191482 5191509 -179097153 + AT_rich Low_complexity Low_complexity 1 27 0 21 49 0 49 chr4 5192365 5192426 -179096236 + AT_rich Low_complexity Low_complexity 1 58 0 283 198 20 0 chr4 5192431 5192508 -179096154 + FLAM SINE Alu 67 131 -2 2028 98 11 18 chr4 5192885 5193195 -179095467 - AluSx SINE Alu 0 308 1 214 316 42 71 chr4 5193404 5193458 -179095204 + MIR SINE MIR 100 154 -108 778 155 0 0 chr4 5193458 5193574 -179095088 + FLAM_A SINE Alu 1 116 -17 227 29 57 0 chr4 5193577 5193612 -179095050 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 214 316 42 71 chr4 5193612 5193721 -179094941 + MIR SINE MIR 156 262 0 1603 163 21 52 chr4 5193976 5194265 -179094397 + AluJo SINE Alu 10 289 -23 527 285 99 90 chr4 5194418 5194850 -179093812 - L2 LINE L2 -3 3310 2875 1052 248 49 75 chr4 5195046 5195290 -179093372 + L2 LINE L2 1928 2177 -1137 1362 76 167 5 chr4 5195290 5195488 -179093174 + MER30 DNA MER1_type 1 230 0 1052 248 49 75 chr4 5195488 5195543 -179093119 + L2 LINE L2 2177 2232 -1082 611 250 65 6 chr4 5195543 5195711 -179092951 + MER5B DNA MER1_type 1 178 0 1052 248 49 75 chr4 5195711 5195862 -179092800 + L2 LINE L2 2232 2367 -947 440 141 99 0 chr4 5195958 5196029 -179092633 + AluJ/FLAM SINE Alu 5 82 -230 631 295 52 42 chr4 5196029 5196409 -179092253 + L2 LINE L2 2748 3141 -172 725 229 204 10 chr4 5196414 5196615 -179092047 + MIR SINE MIR 21 260 -2 335 303 115 0 chr4 5196634 5196756 -179091906 + L2 LINE L2 3178 3313 0 258 143 41 0 chr4 5197711 5197760 -179090902 - Alu SINE Alu -8 294 244 361 262 111 32 chr4 5198349 5198475 -179090187 + MIR SINE MIR 112 247 -15 663 218 15 0 chr4 5198486 5198619 -179090043 - FLAM_C SINE Alu -7 136 2 690 270 137 5 chr4 5198849 5199053 -179089609 + MIR SINE MIR 32 262 0 204 357 70 49 chr4 5199232 5199375 -179089287 + L2 LINE L2 3167 3312 -1 210 311 175 0 chr4 5199397 5199500 -179089162 - MIR3 SINE MIR 0 208 88 1652 172 11 0 chr4 5199709 5199970 -179088692 - AluJo SINE Alu -20 292 29 1044 118 0 0 chr4 5200124 5200259 -179088403 - AluJb SINE Alu -26 286 152 3235 143 118 33 chr4 5200896 5201533 -179087129 - LTR8 LTR ERV1 0 691 1 248 280 40 0 chr4 5201684 5201759 -179086903 + MLT2F LTR ERVL 54 131 -532 321 289 47 0 chr4 5201953 5202081 -179086581 + MLT2F LTR ERVL 421 554 -109 434 283 5 35 chr4 5202626 5202943 -179085719 + G-rich Low_complexity Low_complexity 1 307 0 225 237 0 0 chr4 5203036 5203095 -179085567 + (TTGGGG)n Simple_repeat Simple_repeat 5 63 0 278 333 69 7 chr4 5213539 5213683 -179074979 + MIR SINE MIR 108 260 -2 30420 110 13 60 chr4 5213774 5215940 -179072722 + L1PA7 LINE L1 9 2276 -3878 2412 75 0 3 chr4 5215940 5216235 -179072427 + AluY SINE Alu 1 294 -17 30420 110 13 60 chr4 5216235 5218230 -179070432 + L1PA7 LINE L1 2276 3746 -2408 2048 119 36 23 chr4 5218230 5218533 -179070129 + AluSc SINE Alu 3 309 0 30420 110 13 60 chr4 5218533 5220834 -179067828 + L1PA7 LINE L1 3746 6154 0 2350 82 0 0 chr4 5220873 5221195 -179067467 + AluSc SINE Alu 1 322 0 1946 68 59 94 chr4 5221537 5221709 -179066953 - AluSp SINE Alu -17 296 138 2202 100 0 3 chr4 5221709 5221999 -179066663 - AluY SINE Alu -22 289 1 1946 68 59 94 chr4 5221999 5222133 -179066529 - AluSp SINE Alu -175 138 1 1411 54 0 0 chr4 5223281 5223447 -179065215 - AluY SINE Alu -12 299 134 2138 137 0 9 chr4 5224210 5224525 -179064137 + AluSx SINE Alu 1 312 0 2000 169 7 0 chr4 5224531 5224839 -179063823 + AluJb SINE Alu 1 310 -2 1879 140 0 33 chr4 5225602 5225909 -179062753 + AluJb SINE Alu 2 298 -14 21 0 0 0 chr4 5230617 5230638 -179058024 + AT_rich Low_complexity Low_complexity 1 21 0 227 288 14 13 chr4 5230994 5231084 -179057578 + GA-rich Low_complexity Low_complexity 1 90 0 1373 284 70 16 chr4 5232650 5233224 -179055438 + L1ME3A LINE L1 5564 6168 -2 442 228 223 45 chr4 5233586 5233788 -179054874 + MLT1E LTR MaLR 1 238 -355 867 248 63 4 chr4 5233797 5234035 -179054627 + MLT1E LTR MaLR 341 592 -1 2333 111 0 13 chr4 5234298 5234613 -179054049 - AluY SINE Alu 0 311 1 2095 109 32 0 chr4 5234616 5234901 -179053761 - AluSx SINE Alu -18 294 1 819 187 0 15 chr4 5235303 5235437 -179053225 + FLAM_C SINE Alu 1 132 -1 763 138 98 0 chr4 5235569 5235692 -179052970 - AluJo SINE Alu -177 135 1 238 311 82 0 chr4 5236418 5236479 -179052183 + L2 LINE L2 3136 3201 -71 1211 176 129 29 chr4 5239539 5239818 -179048844 + AluJo SINE Alu 4 310 -2 35 54 0 0 chr4 5239926 5239982 -179048680 + AT_rich Low_complexity Low_complexity 1 56 0 1897 167 3 3 chr4 5240301 5240600 -179048062 + AluSx SINE Alu 1 299 -13 2173 130 0 0 chr4 5240851 5241144 -179047518 + AluSx SINE Alu 1 293 -19 2513 64 0 0 chr4 5241173 5241470 -179047192 + AluY SINE Alu 1 297 -14 1795 163 23 7 chr4 5242074 5242381 -179046281 - AluJo SINE Alu 0 312 1 662 123 105 0 chr4 5242822 5242936 -179045726 - AluSg/x SINE Alu -1 311 186 391 149 402 0 chr4 5242959 5243046 -179045616 - FLAM_C SINE Alu -7 126 5 2034 148 0 10 chr4 5243728 5244032 -179044630 - AluJb SINE Alu -11 301 1 1699 143 3 44 chr4 5244131 5244468 -179044194 + AluSx SINE Alu 1 325 0 1958 145 10 19 chr4 5244498 5244808 -179043854 - AluJo SINE Alu -1 311 5 307 269 111 0 chr4 5244899 5245007 -179043655 - L2 LINE L2 -4 3309 3190 282 341 22 37 chr4 5245128 5245263 -179043399 - L3 LINE CR1 -22 1555 1423 340 305 130 11 chr4 5245351 5245528 -179043134 - L3 LINE CR1 -175 1402 1205 382 259 111 44 chr4 5245544 5245679 -179042983 + MIR SINE MIR 4 147 -115 2135 116 23 13 chr4 5245890 5246193 -179042469 - AluSx SINE Alu -6 306 1 885 153 0 29 chr4 5246220 5246357 -179042305 - FLAM_C SINE Alu 0 133 1 2244 99 3 7 chr4 5246652 5246955 -179041707 + AluY SINE Alu 1 302 -9 524 297 80 42 chr4 5246955 5247144 -179041518 - L1ME LINE L1 -694 5468 5288 2181 114 17 0 chr4 5247144 5247443 -179041219 - AluSx SINE Alu -8 304 1 524 297 80 42 chr4 5247443 5247523 -179041139 - L1ME LINE L1 -874 5288 5212 2035 131 10 10 chr4 5247523 5247820 -179040842 - AluSx SINE Alu -15 297 1 524 297 80 42 chr4 5247820 5248372 -179040290 - L1ME LINE L1 -950 5212 4615 2044 124 3 7 chr4 5248642 5248959 -179039703 + AluSx SINE Alu 1 316 0 1852 132 0 62 chr4 5248981 5249305 -179039357 + AluSx SINE Alu 1 305 0 388 260 149 22 chr4 5250678 5250859 -179037803 - L2 LINE L2 -1 3312 3109 2592 44 0 3 chr4 5251450 5251747 -179036915 + AluY SINE Alu 1 296 -15 188 323 127 61 chr4 5251864 5252375 -179036287 - L2 LINE L2 -1903 1411 867 741 172 112 0 chr4 5252870 5253004 -179035658 + FAM SINE Alu 1 149 -36 250 218 119 0 chr4 5253157 5253258 -179035404 + L1ME LINE L1 2929 3041 -3105 23 33 0 0 chr4 5253305 5253335 -179035327 + AT_rich Low_complexity Low_complexity 1 30 0 2458 82 0 0 chr4 5253389 5253694 -179034968 + AluY SINE Alu 1 305 -6 671 188 0 8 chr4 5253709 5253837 -179034825 + FRAM SINE Alu 49 175 -1 377 275 25 0 chr4 5253847 5253967 -179034695 + L1ME LINE L1 3850 3972 -2174 * 530 191 143 74 chr4 5253966 5254197 -179034465 + L1MC5 LINE L1 6907 7153 -808 2088 134 3 7 chr4 5254198 5254505 -179034157 + AluSx SINE Alu 1 306 -6 636 251 129 8 chr4 5255558 5255813 -179032849 + L1ME LINE L1 5488 5773 -348 2411 95 0 3 chr4 5255981 5256286 -179032376 + AluSx SINE Alu 1 304 -8 2518 54 3 0 chr4 5256430 5256725 -179031937 + AluY SINE Alu 3 298 -13 21 36 0 0 chr4 5257026 5257054 -179031608 + AT_rich Low_complexity Low_complexity 1 28 0 280 313 0 20 chr4 5257069 5257168 -179031494 - L1ME4a LINE L1 -68 6053 5957 2049 142 0 16 chr4 5257669 5257985 -179030677 - AluJo SINE Alu 0 312 2 1621 159 0 87 chr4 5258042 5258375 -179030287 - AluJo SINE Alu -2 310 7 2254 103 3 3 chr4 5258976 5259319 -179029343 - AluSg SINE Alu 0 343 1 248 109 0 55 chr4 5259319 5259340 -179029322 + (TTTTC)n Simple_repeat Simple_repeat 3 180 0 180 111 0 0 chr4 5259342 5259369 -179029293 + (TCCCC)n Simple_repeat Simple_repeat 4 30 0 1981 94 19 11 chr4 5259369 5259634 -179029028 - AluJo SINE Alu -25 287 21 361 182 0 0 chr4 5259636 5259702 -179028960 + MLT1C LTR MaLR 392 457 -10 565 120 0 33 chr4 5260371 5260463 -179028199 + FLAM_A SINE Alu 45 133 -9 387 138 31 0 chr4 5260503 5260568 -179028094 - AluJb SINE Alu -25 277 211 753 218 0 0 chr4 5260568 5260701 -179027961 + AluJo/FRAM SINE Alu 153 285 -27 275 0 29 0 chr4 5260701 5260736 -179027926 + (TAA)n Simple_repeat Simple_repeat 2 37 0 1744 181 32 0 chr4 5261031 5261313 -179027349 + AluJb SINE Alu 1 291 -21 1361 229 87 33 chr4 5261364 5261799 -179026863 - MLT1C LTR MaLR 0 467 1 757 136 0 32 chr4 5261864 5261989 -179026673 + FLAM_A SINE Alu 2 122 -11 1974 138 20 3 chr4 5262042 5262338 -179026324 + AluJb SINE Alu 1 301 -11 2232 99 7 30 chr4 5262340 5262475 -179026187 + AluSq SINE Alu 2 139 -174 2405 61 0 51 chr4 5262475 5262786 -179025876 + AluY SINE Alu 1 295 -16 2232 99 7 30 chr4 5262786 5262953 -179025709 + AluSq SINE Alu 139 297 -16 3378 49 30 5 chr4 5269600 5270031 -179018631 - MLT2A1 LTR ERVL 0 444 3 17762 76 19 24 chr4 5270033 5270203 -179018459 - ERVL-A1 LTR ERVL 0 5654 5485 2132 100 13 17 chr4 5270203 5270504 -179018158 - AluSq SINE Alu -13 300 1 17762 76 19 24 chr4 5270504 5270959 -179017703 - ERVL-A1 LTR ERVL -169 5485 5029 2474 64 0 10 chr4 5270959 5271257 -179017405 - AluY SINE Alu -16 295 1 17762 76 19 24 chr4 5271257 5273466 -179015196 - ERVL-A1 LTR ERVL -625 5029 2911 1430 65 0 6 chr4 5273567 5273736 -179014926 - AluY SINE Alu -143 168 1 4277 177 45 37 chr4 5273736 5273752 -179014910 + L1MB3 LINE L1 4677 4691 -1492 262 0 26 26 chr4 5273752 5273791 -179014871 + (CAAAA)n Simple_repeat Simple_repeat 5 43 0 4277 177 45 37 chr4 5273791 5274241 -179014421 + L1MB3 LINE L1 4691 5136 -1047 2524 61 3 0 chr4 5274241 5274534 -179014128 - AluY SINE Alu -17 294 1 4277 177 45 37 chr4 5274534 5275565 -179013097 + L1MB3 LINE L1 5136 6178 -5 1953 253 20 23 chr4 5275574 5276172 -179012490 + L1M4 LINE L1 2272 2867 -3279 782 168 30 15 chr4 5276346 5276477 -179012185 - FLAM_C SINE Alu 0 133 1 281 285 84 28 chr4 5279485 5279664 -179008998 + L1M4b LINE L1 11 199 -6660 1084 266 96 40 chr4 5280136 5280435 -179008227 + L1M4b LINE L1 1263 1544 -5311 2016 147 0 23 chr4 5280435 5280735 -179007927 + AluJb SINE Alu 1 293 -19 1084 266 96 40 chr4 5280735 5281263 -179007399 + L1M4b LINE L1 1544 1987 -4868 506 189 25 33 chr4 5281303 5281425 -179007237 + MER67B LTR ERV1 78 198 -463 540 202 62 0 chr4 5281426 5281555 -179007107 + L1MC1 LINE L1 6183 6319 -14 2015 115 31 0 chr4 5281563 5281850 -179006812 - AluSx SINE Alu -6 306 11 271 227 193 20 chr4 5281863 5282013 -179006649 + L1M4b LINE L1 2361 2536 -4602 2138 153 0 3 chr4 5282052 5282365 -179006297 + AluSx SINE Alu 1 312 0 270 176 0 0 chr4 5282376 5282427 -179006235 + GA-rich Low_complexity Low_complexity 2 52 0 279 283 65 30 chr4 5282455 5282685 -179005977 + L1M4b LINE L1 2558 2795 -4343 2292 108 10 0 chr4 5282685 5282982 -179005680 + AluSx SINE Alu 1 300 -12 1540 196 0 4 chr4 5283014 5283285 -179005377 + AluJo SINE Alu 24 293 -19 226 182 18 0 chr4 5283343 5283398 -179005264 + L1M4b LINE L1 2781 2836 -4302 881 252 134 9 chr4 5283443 5283832 -179004830 + L1M4b LINE L1 3009 3415 -3542 534 191 24 15 chr4 5283832 5283944 -179004718 + MLT1A1 LTR MaLR 1 93 -272 541 266 12 0 chr4 5283988 5284157 -179004505 + L1M4b LINE L1 3415 3585 -3372 * 2785 249 85 32 chr4 5284132 5285220 -179003442 + L1M4b LINE L1 3837 4981 -1976 990 85 0 0 chr4 5285220 5285350 -179003312 + AluY SINE Alu 171 300 -11 1588 172 21 81 chr4 5285369 5285701 -179002961 + AluJo SINE Alu 1 312 0 1761 202 82 140 chr4 5285707 5286333 -179002329 + L1M4b LINE L1 4957 5499 -1458 2447 78 10 3 chr4 5286333 5286641 -179002021 + AluSg SINE Alu 1 310 0 1761 202 82 140 chr4 5286641 5287068 -179001594 + L1M4b LINE L1 5499 5949 -1008 2201 116 0 0 chr4 5287201 5287512 -179001150 - AluSx SINE Alu 0 311 1 2428 92 0 0 chr4 5288989 5289295 -178999367 - AluY SINE Alu -5 306 1 228 222 0 63 chr4 5289712 5289775 -178998887 - MIR SINE MIR -65 143 85 2317 99 0 0 chr4 5292145 5292448 -178996214 + AluSx SINE Alu 1 303 -9 311 302 102 34 chr4 5292901 5293106 -178995556 + MIR SINE MIR 44 262 0 187 361 118 14 chr4 5293683 5293827 -178994835 - L2 LINE L2 -19 3253 3095 2182 114 0 3 chr4 5294010 5294308 -178994354 - AluSx SINE Alu -12 300 4 307 231 0 13 chr4 5294437 5294515 -178994147 + Charlie8 DNA MER1_type 92 168 -2249 409 271 118 76 chr4 5294971 5295110 -178993552 + L1MC4 LINE L1 3589 3721 -2425 1470 186 3 68 chr4 5295110 5295258 -178993404 + AluJo SINE Alu 1 120 -192 1793 162 10 10 chr4 5295258 5295548 -178993114 - AluJo SINE Alu -22 290 1 1470 186 3 68 chr4 5295548 5295710 -178992952 + AluJo SINE Alu 120 291 -21 409 271 118 76 chr4 5295710 5295730 -178992932 + L1MC4 LINE L1 3721 3739 -2407 282 95 0 0 chr4 5295730 5295772 -178992890 + (CA)n Simple_repeat Simple_repeat 2 43 0 409 271 118 76 chr4 5295772 5296269 -178992393 + L1MC4 LINE L1 3739 4274 -1872 284 229 123 0 chr4 5296401 5296523 -178992139 + L1MC4 LINE L1 4429 4565 -1581 1062 150 40 93 chr4 5296752 5296978 -178991684 + AluSg/x SINE Alu 85 298 -14 424 196 29 20 chr4 5297210 5297312 -178991350 + MLT1C LTR MaLR 323 425 -42 2383 96 0 0 chr4 5297459 5297762 -178990900 + AluSc SINE Alu 1 303 -6 2356 116 138 5 chr4 5298449 5298827 -178989835 + MSTA LTR MaLR 1 428 0 1810 138 70 54 chr4 5299518 5299845 -178988817 + THE1C LTR MaLR 1 336 -39 2271 111 7 0 chr4 5299845 5300151 -178988511 - AluSp SINE Alu -5 308 1 1810 138 70 54 chr4 5300151 5300192 -178988470 + THE1C LTR MaLR 336 375 0 2469 113 0 6 chr4 5300910 5301264 -178987398 - MER1A DNA MER1_type 0 529 178 358 314 69 39 chr4 5301278 5301482 -178987180 + L1MC4 LINE L1 5023 5232 -914 1387 227 54 116 chr4 5301503 5301533 -178987129 + L1MC4 LINE L1 5254 5284 -2524 2383 88 3 0 chr4 5301533 5301829 -178986833 + AluY SINE Alu 1 297 -14 1387 227 54 116 chr4 5301829 5302158 -178986504 + L1MC4 LINE L1 5284 5632 -2176 1998 169 3 0 chr4 5302158 5302459 -178986203 - AluSx SINE Alu -10 302 1 2252 102 10 0 chr4 5302463 5302758 -178985904 - AluSc SINE Alu -11 298 1 1972 136 0 27 chr4 5302766 5303060 -178985602 - AluJo SINE Alu -24 288 3 1387 227 54 116 chr4 5303060 5303199 -178985463 + L1MC4 LINE L1 5642 5788 -2020 2211 145 0 0 chr4 5303199 5303502 -178985160 + AluSx SINE Alu 3 305 -7 1387 227 54 116 chr4 5303502 5303727 -178984935 + L1MC4 LINE L1 5788 5947 -1861 3663 249 100 36 chr4 5303867 5304672 -178983990 + L1MC4 LINE L1 6298 7050 -992 2292 92 17 0 chr4 5304672 5304965 -178983697 + AluSp SINE Alu 1 298 -15 3663 249 100 36 chr4 5304965 5305724 -178982938 + L1MC4 LINE L1 7050 7962 -80 2039 110 14 21 chr4 5305775 5306065 -178982597 - AluSx SINE Alu -24 288 1 222 91 0 0 chr4 5306954 5306987 -178981675 + (TCC)n Simple_repeat Simple_repeat 1 33 0 1151 173 0 0 chr4 5307614 5307793 -178980869 + AluJb SINE Alu 66 244 -68 1136 143 11 17 chr4 5309378 5309553 -178979109 - AluSg/x SINE Alu -16 294 121 21 36 0 0 chr4 5310412 5310440 -178978222 + AT_rich Low_complexity Low_complexity 1 28 0 1344 161 173 4 chr4 5310689 5310959 -178977703 - AluJo SINE Alu 0 311 1 2358 111 3 0 chr4 5312179 5312485 -178976177 + AluSg SINE Alu 1 307 -3 238 281 133 38 chr4 5313192 5313402 -178975260 - L1MC4 LINE L1 -2 8040 7811 1763 105 124 15 chr4 5313428 5313695 -178974967 + AluSg SINE Alu 1 296 -14 778 184 0 0 chr4 5313700 5313825 -178974837 - FLAM_C SINE Alu -18 125 1 250 281 0 16 chr4 5313838 5313902 -178974760 + CT-rich Low_complexity Low_complexity 2 64 0 365 320 178 33 chr4 5313953 5314284 -178974378 - L1MC4 LINE L1 -360 7682 7304 2102 125 68 3 chr4 5314298 5314650 -178974012 + THE1C LTR MaLR 1 375 0 280 316 81 48 chr4 5314667 5314952 -178973710 - L1MC4 LINE L1 -733 7309 7008 803 132 99 0 chr4 5314952 5315073 -178973589 - FLAM_C SINE Alu 0 133 1 280 316 81 48 chr4 5315073 5315144 -178973518 - L1MC4 LINE L1 -1034 7008 6941 1348 168 0 17 chr4 5315310 5315542 -178973120 + AluSq SINE Alu 85 312 -1 753 200 61 22 chr4 5316196 5316376 -178972286 - MIR SINE MIR -2 260 74 405 280 10 0 chr4 5318031 5318131 -178970531 + L2 LINE L2 2657 2757 -557 215 313 57 47 chr4 5318165 5318376 -178970286 + L2 LINE L2 2844 3056 -216 261 309 186 5 chr4 5318921 5319125 -178969537 - L2 LINE L2 -541 2773 2533 668 228 217 11 chr4 5319242 5319431 -178969231 + MIR SINE MIR 28 255 -7 440 302 83 16 chr4 5320213 5320405 -178968257 + L2 LINE L2 3100 3304 -9 370 282 156 26 chr4 5322094 5322555 -178966107 + L1MEd LINE L1 597 1117 -5002 2117 235 88 64 chr4 5322605 5323149 -178965513 + L1MCa LINE L1 888 1417 -5190 2216 117 7 0 chr4 5323149 5323457 -178965205 + AluSx SINE Alu 1 310 -2 2117 235 88 64 chr4 5323457 5324281 -178964381 + L1MCa LINE L1 1417 2219 -4388 795 206 0 0 chr4 5324281 5324412 -178964250 + FLAM_A SINE Alu 3 133 0 2117 235 88 64 chr4 5324412 5324468 -178964194 + L1MCa LINE L1 2219 2272 -4335 2479 83 0 0 chr4 5324468 5324769 -178963893 + AluY SINE Alu 11 311 0 2117 235 88 64 chr4 5324769 5324800 -178963862 + L1MCa LINE L1 2272 2609 -3998 1026 218 43 70 chr4 5324798 5324983 -178963679 + L1MCa LINE L1 3161 3350 -3076 * 1653 146 16 59 chr4 5324983 5325304 -178963358 + AluJb SINE Alu 6 312 0 1026 218 43 70 chr4 5325304 5325587 -178963075 + L1MCa LINE L1 3350 3616 -2810 966 161 11 33 chr4 5325588 5325768 -178962894 + FRAM SINE Alu 1 176 0 2289 106 0 0 chr4 5325800 5326092 -178962570 + AluSx SINE Alu 1 292 -20 1666 170 3 55 chr4 5326105 5326417 -178962245 + AluJo SINE Alu 1 296 -16 7245 189 48 43 chr4 5326418 5326581 -178962081 + L1MB3 LINE L1 3629 3790 -2673 2275 117 0 3 chr4 5326581 5326880 -178961782 + AluSx SINE Alu 1 298 -14 7245 189 48 43 chr4 5326880 5327063 -178961599 + L1MB3 LINE L1 3790 3971 -2492 2370 85 16 0 chr4 5327063 5327370 -178961292 + AluSp SINE Alu 1 312 -1 7245 189 48 43 chr4 5327370 5328079 -178960583 + L1MB3 LINE L1 3971 4675 -1788 2458 89 0 0 chr4 5328079 5328381 -178960281 + AluSx SINE Alu 1 302 -10 7245 189 48 43 chr4 5328381 5328458 -178960204 + L1MB3 LINE L1 4675 4750 -1713 1829 120 45 42 chr4 5328458 5328724 -178959938 + AluY SINE Alu 1 270 -41 201 39 0 0 chr4 5328724 5328750 -178959912 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 1829 120 45 42 chr4 5328750 5328792 -178959870 + AluY SINE Alu 270 310 -1 7245 189 48 43 chr4 5328792 5328983 -178959679 + L1MB3 LINE L1 4750 4939 -1524 2401 77 0 7 chr4 5328983 5329283 -178959379 - AluY SINE Alu -13 298 1 7245 189 48 43 chr4 5329283 5329299 -178959363 + L1MB3 LINE L1 4939 4953 -1510 262 0 26 26 chr4 5329299 5329338 -178959324 + (CAAAA)n Simple_repeat Simple_repeat 5 43 0 7245 189 48 43 chr4 5329338 5329788 -178958874 + L1MB3 LINE L1 4953 5399 -1064 2524 61 3 0 chr4 5329788 5330081 -178958581 - AluY SINE Alu -17 294 1 7245 189 48 43 chr4 5330081 5331112 -178957550 + L1MB3 LINE L1 5399 6458 -5 1953 253 20 23 chr4 5331121 5331719 -178956943 + L1M4 LINE L1 2272 2867 -3279 751 191 32 0 chr4 5331889 5332015 -178956647 - FLAM_C SINE Alu -12 131 2 355 280 5 87 chr4 5332867 5333005 -178955657 + L1M4 LINE L1 4476 4593 -1553 2009 115 0 21 chr4 5333005 5333292 -178955370 - AluSx SINE Alu -18 294 14 355 280 5 87 chr4 5333292 5333360 -178955302 + L1M4 LINE L1 4593 4665 -1481 2408 103 3 0 chr4 5333548 5333860 -178954802 + AluSp SINE Alu 1 313 0 1738 183 13 13 chr4 5333911 5334212 -178954450 - AluJo SINE Alu -3 309 9 1894 150 6 29 chr4 5334256 5334569 -178954093 + AluJo SINE Alu 1 306 -6 228 257 14 0 chr4 5334570 5334640 -178954022 + L1M4 LINE L1 4914 4984 -1162 3378 49 30 5 chr4 5335780 5336211 -178952451 - MLT2A1 LTR ERVL 0 444 3 17749 77 19 24 chr4 5336213 5336383 -178952279 - ERVL-A1 LTR ERVL 0 5654 5485 2132 100 13 17 chr4 5336383 5336684 -178951978 - AluSq SINE Alu -13 300 1 17749 77 19 24 chr4 5336684 5337139 -178951523 - ERVL-A1 LTR ERVL -169 5485 5029 2386 71 3 10 chr4 5337139 5337436 -178951226 - AluY SINE Alu -16 295 1 17749 77 19 24 chr4 5337436 5339684 -178948978 - ERVL-A1 LTR ERVL -625 5029 2875 2323 82 0 26 chr4 5339690 5339995 -178948667 - AluY SINE Alu -14 297 1 1936 100 8 0 chr4 5339999 5340249 -178948413 - AluSg SINE Alu -15 295 44 2860 208 53 20 chr4 5340250 5340984 -178947678 - L1MDb LINE L1 -2001 4956 4199 1473 217 8 42 chr4 5340984 5341346 -178947316 + MLT1A1 LTR MaLR 1 365 0 795 227 146 18 chr4 5341346 5341681 -178946981 - L1MDb LINE L1 -2754 4203 3826 751 245 58 0 chr4 5341680 5341921 -178946741 - L1MDb LINE L1 -4899 1956 1702 * 2030 139 0 0 chr4 5341936 5342217 -178946445 + AluSx SINE Alu 1 281 -31 255 204 0 0 chr4 5342226 5342280 -178946382 + (TATATG)n Simple_repeat Simple_repeat 3 56 0 322 163 23 58 chr4 5342288 5342374 -178946288 - L1MDb LINE L1 -5210 1750 1668 1526 235 163 10 chr4 5342399 5342913 -178945749 - L1MDb LINE L1 -5635 1224 632 1142 181 70 31 chr4 5342979 5343206 -178945456 + MER46A DNA MER2_type 1 236 0 226 303 59 0 chr4 5344294 5344413 -178944249 + L2 LINE L2 2473 2598 -716 232 148 49 49 chr4 5345755 5345816 -178942846 + LTR56 LTR ERV1 1 61 -384 781 138 0 0 chr4 5345816 5345925 -178942737 + AluJb SINE Alu 2 110 -202 959 141 20 0 chr4 5345925 5346074 -178942588 - AluYa8 SINE Alu -20 290 139 2383 109 3 0 chr4 5346076 5346387 -178942275 - AluSq SINE Alu -1 312 1 1246 136 23 0 chr4 5346399 5346576 -178942086 - AluSg/x SINE Alu -16 296 116 2333 95 0 0 chr4 5346597 5346893 -178941769 - AluY SINE Alu -15 296 1 326 302 93 14 chr4 5346925 5347064 -178941598 - LTR49-int LTR ERV1 -4654 1677 1528 1627 169 17 24 chr4 5347094 5347390 -178941272 + AluJb SINE Alu 1 294 -18 1772 154 3 32 chr4 5347398 5347621 -178941041 + AluJb SINE Alu 9 222 -90 3992 181 56 1 chr4 5347621 5348317 -178940345 - MER50 LTR ERV1 0 734 1 1772 154 3 32 chr4 5348317 5348405 -178940257 + AluJb SINE Alu 222 311 -1 551 183 125 17 chr4 5348934 5349054 -178939608 + FLAM_C SINE Alu 1 133 0 2119 88 51 17 chr4 5349069 5349364 -178939298 + AluSp SINE Alu 1 305 -8 240 108 54 0 chr4 5349377 5349414 -178939248 + FLAM_C SINE Alu 132 170 0 352 271 122 0 chr4 5349562 5349669 -178938993 - MER34B LTR ERV1 -441 124 5 2393 72 7 0 chr4 5350036 5350326 -178938336 - AluSc SINE Alu -17 292 1 1974 121 3 65 chr4 5350334 5350657 -178938005 - AluSq SINE Alu -10 303 1 610 219 38 104 chr4 5350909 5350967 -178937695 - LTR56 LTR ERV1 -120 325 265 1612 169 6 60 chr4 5350967 5351107 -178937555 + AluJb SINE Alu 1 147 -165 2489 70 3 6 chr4 5351107 5351419 -178937243 + AluY SINE Alu 1 311 0 1612 169 6 60 chr4 5351419 5351592 -178937070 + AluJb SINE Alu 147 297 -15 610 219 38 104 chr4 5351592 5351820 -178936842 - LTR56 LTR ERV1 -180 265 58 1425 134 13 22 chr4 5351829 5352053 -178936609 - AluJo SINE Alu -3 309 88 207 162 0 0 chr4 5352060 5352097 -178936565 + (TA)n Simple_repeat Simple_repeat 1 37 0 22 0 0 0 chr4 5352098 5352120 -178936542 + AT_rich Low_complexity Low_complexity 1 22 0 2117 121 0 29 chr4 5352127 5352442 -178936220 + AluSq SINE Alu 1 306 -7 837 178 40 7 chr4 5352591 5352743 -178935919 - FRAM SINE Alu -25 151 1 501 235 11 74 chr4 5352758 5353043 -178935619 + LTR49-int LTR ERV1 2707 2973 -1907 987 155 123 40 chr4 5353061 5353338 -178935324 + LTR49-int LTR ERV1 4168 4467 -3653 896 171 57 0 chr4 5353347 5353505 -178935157 + AluJb SINE Alu 144 310 -2 862 103 58 17 chr4 5353539 5353713 -178934949 + LTR49-int LTR ERV1 4007 4187 -2144 2228 97 10 3 chr4 5353714 5354004 -178934658 - AluSg1 SINE Alu -17 292 1 2332 82 0 3 chr4 5354016 5354309 -178934353 - AluY SINE Alu -19 292 1 575 220 55 0 chr4 5354346 5354455 -178934207 + AluJb SINE Alu 3 117 -195 312 285 73 61 chr4 5355252 5355417 -178933245 - L1ME3 LINE L1 -192 5970 5804 316 306 20 41 chr4 5355507 5355654 -178933008 - L1ME3 LINE L1 -533 5629 5497 1590 181 26 36 chr4 5355796 5355959 -178932703 - AluJo SINE Alu -11 301 141 2706 49 0 0 chr4 5355959 5356265 -178932397 - AluY SINE Alu -5 306 1 1590 181 26 36 chr4 5356265 5356405 -178932257 - AluJo SINE Alu -171 141 1 285 323 62 13 chr4 5356406 5356632 -178932030 - L1ME3 LINE L1 -1588 4558 4322 1873 169 10 0 chr4 5356632 5356922 -178931740 - AluJo SINE Alu -15 297 5 1679 161 3 25 chr4 5357201 5357487 -178931175 + AluJb SINE Alu 1 280 -32 303 93 0 0 chr4 5357490 5357533 -178931129 + (GGGA)n Simple_repeat Simple_repeat 4 46 0 2315 85 20 0 chr4 5357537 5357832 -178930830 - AluSp SINE Alu -12 301 1 337 243 57 64 chr4 5357838 5357978 -178930684 - L1ME3 LINE L1 -2298 3848 3710 862 123 0 0 chr4 5357980 5358094 -178930568 - AluSp/q SINE Alu -25 288 175 238 296 116 73 chr4 5358097 5358536 -178930126 - L1ME3 LINE L1 -2397 3749 3292 1750 151 28 14 chr4 5358564 5358849 -178929813 - AluJb SINE Alu -21 291 3 756 261 91 67 chr4 5358858 5359312 -178929350 - L1MC5 LINE L1 -30 7931 2938 1410 90 0 6 chr4 5359343 5359520 -178929142 + AluSq SINE Alu 3 178 -135 2213 133 8 41 chr4 5359523 5359985 -178928677 - AluSx SINE Alu -10 302 1 1888 161 14 0 chr4 5360032 5360318 -178928344 + AluSx SINE Alu 17 306 -6 2170 123 3 0 chr4 5360320 5360620 -178928042 + AluSx SINE Alu 1 301 -11 331 253 234 7 chr4 5360745 5360899 -178927763 - MER5A DNA MER1_type 0 189 1 1800 163 50 0 chr4 5361833 5362115 -178926547 - AluJb SINE Alu -16 296 1 2410 78 0 3 chr4 5363875 5364169 -178924493 - AluSc SINE Alu -14 295 3 2372 99 0 7 chr4 5364173 5364475 -178924187 - AluSx SINE Alu -12 300 1 22 0 0 0 chr4 5364479 5364501 -178924161 + AT_rich Low_complexity Low_complexity 1 22 0 260 222 0 16 chr4 5365033 5365096 -178923566 + (TATATG)n Simple_repeat Simple_repeat 2 63 0 727 291 86 79 chr4 5365131 5365356 -178923306 + L1M4 LINE L1 2676 2898 -3248 1920 121 81 0 chr4 5365356 5365629 -178923033 - AluSx SINE Alu -17 295 1 727 291 86 79 chr4 5365629 5365656 -178923006 + L1M4 LINE L1 2898 2923 -3223 2335 97 0 0 chr4 5365656 5365978 -178922684 + AluSx SINE Alu 1 312 0 727 291 86 79 chr4 5365978 5366144 -178922518 + L1M4 LINE L1 2923 3086 -3060 2594 59 0 3 chr4 5366144 5366449 -178922213 + AluY SINE Alu 1 304 -7 727 291 86 79 chr4 5366449 5366492 -178922170 + L1M4 LINE L1 3086 3127 -3019 1787 183 0 13 chr4 5366492 5366804 -178921858 + AluJb SINE Alu 1 308 -4 727 291 86 79 chr4 5366804 5366824 -178921838 + L1M4 LINE L1 3127 3145 -3001 2414 97 0 0 chr4 5366824 5367134 -178921528 + AluSg SINE Alu 1 310 0 727 291 86 79 chr4 5367134 5367565 -178921097 + L1M4 LINE L1 3145 3572 -2574 2103 89 14 11 chr4 5367565 5367871 -178920791 - AluSg SINE Alu 0 307 1 727 291 86 79 chr4 5367871 5368533 -178920129 + L1M4 LINE L1 3572 4228 -1918 2235 114 0 9 chr4 5368533 5368849 -178919813 + AluSq SINE Alu 1 313 0 727 291 86 79 chr4 5368849 5368872 -178919790 + L1M4 LINE L1 4228 4249 -1897 2012 138 3 0 chr4 5368872 5369178 -178919484 + AluSq SINE Alu 1 307 0 727 291 86 79 chr4 5369178 5369218 -178919444 + L1M4 LINE L1 4249 4287 -1859 1349 142 47 91 chr4 5369218 5369247 -178919415 - MER33 DNA MER1_type -2261 324 295 2043 111 0 108 chr4 5369247 5369591 -178919071 + AluSx SINE Alu 1 307 -5 1349 142 47 91 chr4 5369591 5369900 -178918762 - MER33 DNA MER1_type -2290 295 1 727 291 86 79 chr4 5369900 5370159 -178918503 + L1M4 LINE L1 4287 4599 -1547 2000 118 0 21 chr4 5370159 5370446 -178918216 - AluSx SINE Alu -18 294 14 727 291 86 79 chr4 5370446 5370514 -178918148 + L1M4 LINE L1 4599 4665 -1481 2443 74 3 6 chr4 5370702 5371014 -178917648 + AluY SINE Alu 1 311 0 517 174 0 0 chr4 5371015 5371101 -178917561 + AluJb SINE Alu 127 212 -100 3239 194 60 12 chr4 5372242 5372902 -178915760 + L1M4 LINE L1 3573 4276 -1870 2166 82 53 4 chr4 5372902 5373183 -178915479 + AluSq SINE Alu 1 295 -18 3239 194 60 12 chr4 5373183 5373285 -178915377 + L1M4 LINE L1 4276 4372 -1774 184 274 24 113 chr4 5373286 5373410 -178915252 + L2 LINE L2 3015 3127 -145 210 71 0 0 chr4 5374714 5374742 -178913920 + (TG)n Simple_repeat Simple_repeat 1 28 0 357 356 0 6 chr4 5375395 5375572 -178913090 + (CA)n Simple_repeat Simple_repeat 1 176 0 226 179 0 0 chr4 5375900 5375939 -178912723 - MIR SINE MIR -157 105 67 22 35 0 0 chr4 5376891 5376920 -178911742 + AT_rich Low_complexity Low_complexity 1 29 0 1368 172 18 0 chr4 5427198 5427425 -178861237 - MER1A DNA MER1_type -296 231 1 1884 174 10 0 chr4 5427504 5427798 -178860864 - AluJo SINE Alu -15 297 1 1976 157 0 3 chr4 5427798 5428097 -178860565 - AluJo SINE Alu -13 299 1 184 233 0 100 chr4 5428793 5428853 -178859809 + MIR3 SINE MIR 143 196 -12 340 156 0 47 chr4 5429000 5429064 -178859598 + AluJ/FLAM SINE Alu 1 61 -241 2354 84 3 3 chr4 5429743 5430041 -178858621 + AluSp SINE Alu 1 298 -15 2333 108 0 7 chr4 5430716 5431023 -178857639 + AluSx SINE Alu 1 305 -7 248 180 49 0 chr4 5431128 5431189 -178857473 + A-rich Low_complexity Low_complexity 3 66 0 2350 112 0 0 chr4 5431356 5431668 -178856994 + AluSx SINE Alu 1 312 0 216 0 0 0 chr4 5432120 5432144 -178856518 + (CA)n Simple_repeat Simple_repeat 1 24 0 308 316 71 26 chr4 5433388 5433543 -178855119 + L1MC5 LINE L1 7327 7488 -473 745 175 60 22 chr4 5433599 5433782 -178854880 + L1MB4 LINE L1 5991 6180 0 321 161 0 0 chr4 5433785 5433841 -178854821 + L1MB8 LINE L1 6093 6148 -30 1684 58 0 19 chr4 5434240 5434448 -178854214 + AluY SINE Alu 96 299 -12 2295 77 3 39 chr4 5434858 5435169 -178853493 - AluY SINE Alu -11 300 1 805 235 11 0 chr4 5435170 5435349 -178853313 - AluJo SINE Alu -124 188 8 2272 113 0 3 chr4 5435493 5435802 -178852860 - AluSx SINE Alu 0 312 5 217 232 146 66 chr4 5438632 5438783 -178849879 - MIR SINE MIR -19 243 81 26 50 0 0 chr4 5439100 5439140 -178849522 + AT_rich Low_complexity Low_complexity 1 40 0 2102 125 0 0 chr4 5439159 5439438 -178849224 - AluJb SINE Alu -29 283 5 2097 182 73 137 chr4 5439668 5440124 -178848538 + Charlie1 DNA MER1_type 1872 2356 -405 1911 123 0 53 chr4 5440124 5440442 -178848220 + AluSc SINE Alu 1 301 -8 2097 182 73 137 chr4 5440442 5440649 -178848013 + Charlie1 DNA MER1_type 2356 2458 -303 2068 89 0 19 chr4 5440649 5440920 -178847742 + AluSq SINE Alu 1 266 -47 2097 182 73 137 chr4 5440920 5441206 -178847456 + Charlie1 DNA MER1_type 2458 2761 0 420 320 33 62 chr4 5441361 5441605 -178847057 + L1MC4 LINE L1 7758 7994 -48 321 347 67 21 chr4 5441675 5441868 -178846794 - L1MEd LINE L1 -4907 1477 1302 307 305 125 38 chr4 5441948 5442315 -178846347 - L1MEd LINE L1 -5288 1084 686 247 287 54 30 chr4 5442483 5442578 -178846084 - L1MEd LINE L1 -5924 448 346 2328 90 0 3 chr4 5442578 5442877 -178845785 - AluSq SINE Alu -15 298 1 247 287 54 30 chr4 5442877 5442948 -178845714 - L1MEd LINE L1 -6026 346 278 2472 86 0 3 chr4 5443058 5443371 -178845291 - AluSx SINE Alu 0 312 1 1436 169 97 29 chr4 5443923 5444201 -178844461 - AluJb SINE Alu -13 299 3 923 126 0 38 chr4 5444321 5444480 -178844182 + MSTC LTR MaLR 225 377 -51 213 242 106 0 chr4 5445674 5445740 -178842922 - MIR SINE MIR -79 183 111 331 284 199 0 chr4 5445751 5445952 -178842710 - MIR SINE MIR 0 262 22 2538 64 0 3 chr4 5446338 5446636 -178842026 - AluY SINE Alu -14 297 1 304 247 0 14 chr4 5447252 5447325 -178841337 + L1ME4a LINE L1 6043 6114 -7 2147 66 92 0 chr4 5447359 5447632 -178841030 + AluY SINE Alu 1 298 -13 1643 159 78 3 chr4 5447833 5448116 -178840546 - AluJo SINE Alu -8 304 1 2173 106 3 39 chr4 5448302 5448443 -178840219 + AluSg SINE Alu 1 145 -165 2486 74 0 0 chr4 5448443 5448740 -178839922 + AluY SINE Alu 1 297 -14 2173 106 3 39 chr4 5448740 5448909 -178839753 + AluSg SINE Alu 145 300 -10 2014 132 35 0 chr4 5449037 5449325 -178839337 + AluSg SINE Alu 2 299 -11 194 307 120 7 chr4 5449490 5449640 -178839022 + MIR SINE MIR 96 262 0 2022 145 10 0 chr4 5450460 5450764 -178837898 + AluJb SINE Alu 1 307 -5 1354 163 106 12 chr4 5451350 5451595 -178837067 + AluJb SINE Alu 1 268 -44 779 179 8 0 chr4 5451641 5451764 -178836898 + FLAM_C SINE Alu 1 124 -9 37 23 0 0 chr4 5451764 5451808 -178836854 + AT_rich Low_complexity Low_complexity 1 44 0 1750 108 123 4 chr4 5452037 5452306 -178836356 + AluSx SINE Alu 1 301 -1 2401 62 3 7 chr4 5453012 5453302 -178835360 + AluSc SINE Alu 1 289 -20 1648 215 19 25 chr4 5453560 5453927 -178834735 + MLT1A1 LTR MaLR 1 365 0 2147 131 0 7 chr4 5454198 5454503 -178834159 - AluJb SINE Alu -3 309 7 376 310 120 37 chr4 5454690 5454990 -178833672 + L2 LINE L2 2478 2802 -512 517 245 38 43 chr4 5455142 5455326 -178833336 + LTR41 LTR ERVL 1 183 -590 1927 102 51 17 chr4 5455623 5455917 -178832745 - AluSq SINE Alu -9 304 1 326 311 58 39 chr4 5455986 5456192 -178832470 + L2 LINE L2 3084 3293 -20 344 212 106 15 chr4 5456357 5456489 -178832173 + L1MEc LINE L1 744 887 -5509 1899 156 3 19 chr4 5456493 5456808 -178831854 + AluSx SINE Alu 1 310 -2 1685 83 0 200 chr4 5456817 5457192 -178831470 + AluSx SINE Alu 3 302 0 2237 91 13 7 chr4 5457201 5457499 -178831163 + AluSp SINE Alu 1 300 -13 469 207 112 73 chr4 5457499 5457671 -178830991 + L1M4 LINE L1 4247 4428 -1718 754 187 8 0 chr4 5457673 5457796 -178830866 - FLAM_C SINE Alu -16 127 4 2351 191 43 41 chr4 5457843 5458434 -178830228 + L1M4 LINE L1 4460 5054 -1092 2264 107 10 0 chr4 5458434 5458733 -178829929 - AluSg SINE Alu -8 302 1 2351 191 43 41 chr4 5458733 5458796 -178829866 + L1M4 LINE L1 5054 5115 -1031 2466 67 0 0 chr4 5458819 5459116 -178829546 + AluY SINE Alu 1 297 -14 270 284 15 0 chr4 5659695 5659762 -178628900 + MER112 DNA MER1_type 18 85 -175 1502 128 54 0 chr4 5659847 5660089 -178628573 - AluJo SINE Alu -57 255 1 2010 127 0 13 chr4 5660099 5660414 -178628248 - AluSx SINE Alu -1 311 1 1976 123 3 13 chr4 5660426 5660742 -178627920 - AluSq SINE Alu 0 313 1 180 333 78 31 chr4 5661705 5661834 -178626828 + MIR3 SINE MIR 11 145 -63 468 125 14 0 chr4 5662689 5662761 -178625901 - AluS SINE Alu -238 74 2 1926 255 30 11 chr4 5662761 5663757 -178624905 - L1MB3 LINE L1 -351 5832 4818 1940 113 3 3 chr4 5663802 5664103 -178624559 + AluSp SINE Alu 1 301 -12 1102 216 2 121 chr4 5664173 5664380 -178624282 - L1MA4 LINE L1 -170 6130 5900 1482 179 0 4 chr4 5664380 5664660 -178624002 - AluSx SINE Alu -32 280 2 1102 216 2 121 chr4 5664660 5664702 -178623960 - L1MA4 LINE L1 -400 5900 5855 2633 20 0 0 chr4 5664702 5665003 -178623659 + AluY SINE Alu 11 311 0 1102 216 2 121 chr4 5665003 5665165 -178623497 - L1MA4 LINE L1 -445 5855 5767 1973 124 0 31 chr4 5665351 5665674 -178622988 + AluSp SINE Alu 1 313 0 380 228 74 74 chr4 5665817 5665966 -178622696 + MER5B DNA MER1_type 25 173 -5 697 228 46 0 chr4 5666069 5666266 -178622396 - MER6B DNA MER2_type 0 210 5 2224 108 0 6 chr4 5668700 5669015 -178619647 - AluSq SINE Alu 0 313 1 594 233 29 86 chr4 5669082 5669172 -178619490 + L1MEd LINE L1 23 117 -6002 2027 105 11 0 chr4 5669172 5669458 -178619204 + AluSq SINE Alu 1 289 -24 243 0 0 0 chr4 5669463 5669490 -178619172 + (TAAAA)n Simple_repeat Simple_repeat 3 29 0 594 233 29 86 chr4 5669490 5669603 -178619059 + L1MEd LINE L1 121 220 -5899 1102 267 58 47 chr4 5669664 5669901 -178618761 + L1MEd LINE L1 329 575 -5544 2123 86 17 3 chr4 5669901 5670191 -178618471 + AluSq SINE Alu 1 294 -19 1102 267 58 47 chr4 5670191 5670398 -178618264 + L1MEd LINE L1 575 778 -5341 341 247 0 12 chr4 5670482 5670567 -178618095 + MLT1E LTR MaLR 36 119 -474 626 234 0 23 chr4 5670567 5670765 -178617897 - FLAM_C SINE Alu 0 143 2 2063 100 21 0 chr4 5670775 5671064 -178617598 - AluSx SINE Alu -17 295 1 236 263 13 40 chr4 5671072 5671148 -178617514 + MLT1E3 LTR MaLR 12 85 -569 327 277 37 9 chr4 5671163 5671378 -178617284 + MLT1E3 LTR MaLR 193 397 -227 1835 206 101 30 chr4 5671382 5672484 -178616178 - SATR1 Satellite Satellite -20 1179 1 315 211 11 63 chr4 5672560 5672750 -178615912 + (TTA)n Simple_repeat Simple_repeat 1 180 0 2082 206 144 13 chr4 5672864 5674080 -178614582 - SATR1 Satellite Satellite -24 1374 1 2145 192 108 12 chr4 5674118 5674912 -178613750 - SATR1 Satellite Satellite -2 870 1 25057 101 13 14 chr4 5675266 5679053 -178609609 + HERVE LTR ERV1 1108 4945 -2868 2135 204 106 2 chr4 5679059 5680308 -178608354 - SATR1 Satellite Satellite 0 1379 1 2055 155 111 40 chr4 5680325 5680886 -178607776 - SATR1 Satellite Satellite 0 600 1 892 219 286 9 chr4 5680916 5681245 -178607417 - SATR1 Satellite Satellite -3 467 48 1305 101 29 14 chr4 5681249 5681456 -178607206 - AluSq SINE Alu -91 222 13 4057 107 35 2 chr4 5682441 5683076 -178605586 - L1PA5 LINE L1 -32 6122 5467 2086 123 0 3 chr4 5683255 5683557 -178605105 - AluSg SINE Alu -9 301 1 1796 237 24 26 chr4 5683560 5684028 -178604634 - MLT1C LTR MaLR 0 467 1 2674 142 19 54 chr4 5684036 5684161 -178604501 + L1MA8 LINE L1 5719 5847 -444 1678 160 3 35 chr4 5684161 5684303 -178604359 + AluJb SINE Alu 1 146 -166 1984 75 104 4 chr4 5684303 5684583 -178604079 + AluSp SINE Alu 2 309 -4 1678 160 3 35 chr4 5684583 5684753 -178603909 + AluJb SINE Alu 146 303 -9 2674 142 19 54 chr4 5684753 5685148 -178603514 + L1MA8 LINE L1 5847 6221 -70 7558 111 54 11 chr4 5685153 5686309 -178602353 - HSMAR2 DNA Mariner -5 1297 93 309 262 123 41 chr4 5686820 5686942 -178601720 - MIR SINE MIR -7 255 124 760 129 313 0 chr4 5686947 5687094 -178601568 - MER46A DNA MER2_type 0 236 44 198 274 39 0 chr4 5687116 5687167 -178601495 - MIR SINE MIR -165 97 45 23 0 0 0 chr4 5687424 5687447 -178601215 + AT_rich Low_complexity Low_complexity 1 23 0 873 136 8 0 chr4 5688022 5688154 -178600508 + FLAM_A SINE Alu 1 133 0 202 308 70 64 chr4 5688346 5688518 -178600144 - L2 LINE L2 -3061 253 81 1131 183 0 24 chr4 5689319 5689532 -178599130 + AluJo SINE Alu 85 292 -20 1802 149 3 13 chr4 5690630 5690931 -178597731 + AluJb SINE Alu 1 298 -14 271 284 65 7 chr4 5690939 5691094 -178597568 + L1ME4a LINE L1 5956 6119 -2 490 264 87 5 chr4 5691118 5691326 -178597336 + L1MC4a LINE L1 5674 5898 -1910 892 253 80 118 chr4 5691331 5691967 -178596695 + L1ME3A LINE L1 5559 6170 0 2099 104 3 28 chr4 5692674 5692992 -178595670 + AluSp SINE Alu 1 310 -3 544 276 144 0 chr4 5693552 5693726 -178594936 + MIR SINE MIR 13 211 -51 2018 119 3 19 chr4 5693774 5694086 -178594576 - AluSx SINE Alu -5 307 1 380 201 166 14 chr4 5694193 5694332 -178594330 + MER106B DNA MER1_type 865 1024 -35 292 43 109 0 chr4 5694325 5694371 -178594291 - MER106A DNA MER1_type -13 223 173 * 2193 102 0 0 chr4 5694402 5694697 -178593965 - AluSq SINE Alu -18 295 1 212 280 224 28 chr4 5694743 5694850 -178593812 - MER5B DNA MER1_type 0 178 51 2374 41 0 10 chr4 5694969 5695260 -178593402 - AluY SINE Alu -23 288 1 214 358 0 0 chr4 5695638 5695719 -178592943 + MIR SINE MIR 59 139 -69 1847 131 13 23 chr4 5696072 5696377 -178592285 + AluJb SINE Alu 1 302 -10 509 138 0 0 chr4 5697556 5697643 -178591019 - L1MA9 LINE L1 0 6312 6226 1147 135 53 55 chr4 5697654 5697944 -178590718 - L1MA9 LINE L1 -15 6285 6007 191 175 79 79 chr4 5697948 5698011 -178590651 + L2 LINE L2 3202 3264 -8 2039 77 0 58 chr4 5698632 5698942 -178589720 - AluSg SINE Alu -18 292 1 286 236 89 102 chr4 5698984 5699141 -178589521 + MIR3 SINE MIR 36 190 -18 408 268 126 35 chr4 5699574 5699772 -178588890 - L1MC/D LINE L1 -2018 5790 5575 300 266 65 81 chr4 5700893 5701017 -178587645 - L2 LINE L2 -14 3258 3137 181 200 25 0 chr4 5701060 5701100 -178587562 - L2 LINE L2 -1 3271 3231 2060 102 23 0 chr4 5701389 5701692 -178586970 + AluSg SINE Alu 1 310 0 2005 116 9 38 chr4 5702268 5702588 -178586074 + AluSq SINE Alu 1 311 -2 326 289 250 19 chr4 5702732 5702940 -178585722 + MIR SINE MIR 7 262 0 921 253 37 17 chr4 5703532 5703773 -178584889 + MIR SINE MIR 17 262 0 22 0 0 0 chr4 5703811 5703833 -178584829 + AT_rich Low_complexity Low_complexity 1 22 0 363 169 26 39 chr4 5703945 5704022 -178584640 + MIR SINE MIR 187 262 0 1395 80 0 50 chr4 5704193 5704393 -178584269 - AluSc SINE Alu -13 296 107 2507 55 0 0 chr4 5704394 5704701 -178583961 - AluY SINE Alu -4 307 1 312 240 69 98 chr4 5704701 5704905 -178583757 - L1MC/D LINE L1 -515 5606 5409 3111 81 39 9 chr4 5705344 5705736 -178582926 + MLT2A1 LTR ERVL 1 409 -35 318 106 0 0 chr4 5705736 5705783 -178582879 + (TA)n Simple_repeat Simple_repeat 2 48 0 3111 81 39 9 chr4 5705783 5705821 -178582841 + MLT2A1 LTR ERVL 409 444 0 272 197 13 53 chr4 5705833 5705864 -178582798 + (TAA)n Simple_repeat Simple_repeat 2 33 -41 805 153 0 0 chr4 5705864 5705982 -178582680 + FLAM_C SINE Alu 1 118 -15 272 197 13 53 chr4 5705982 5706026 -178582636 + (TAA)n Simple_repeat Simple_repeat 33 74 0 275 311 19 0 chr4 5706179 5706285 -178582377 + LTR16C LTR ERVL 17 124 -367 1994 168 109 26 chr4 5707123 5707405 -178581257 - LTR32 LTR ERVL 0 471 141 180 0 0 0 chr4 5707405 5707425 -178581237 + (CAGGA)n Simple_repeat Simple_repeat 5 24 0 1994 168 109 26 chr4 5707425 5707564 -178581098 - LTR32 LTR ERVL -330 141 15 632 253 104 22 chr4 5707567 5707749 -178580913 + MIR SINE MIR 47 243 -19 380 264 11 0 chr4 5707962 5708049 -178580613 - MIR SINE MIR -60 202 115 2187 104 0 0 chr4 5708325 5708623 -178580039 + AluSx SINE Alu 1 298 -14 648 174 0 3 chr4 5708623 5708738 -178579924 - LTR18A LTR ERVL -6 351 248 715 286 61 5 chr4 5708891 5709087 -178579575 - LTR18A LTR ERVL -147 210 4 398 272 48 48 chr4 5709200 5709347 -178579315 - MER117 DNA MER1_type -49 148 2 3984 99 5 0 chr4 5709564 5710119 -178578543 + L1PA10 LINE L1 5611 6168 0 21 0 0 0 chr4 5710466 5710487 -178578175 + GC_rich Low_complexity Low_complexity 1 21 0 1896 187 118 1 chr4 5711098 5711830 -178576832 - SATR1 Satellite Satellite -2 817 1 35 24 0 0 chr4 5711830 5711872 -178576790 + AT_rich Low_complexity Low_complexity 1 42 0 378 236 11 35 chr4 5711922 5712096 -178576566 + (TAA)n Simple_repeat Simple_repeat 3 172 0 22 35 0 0 chr4 5712143 5712172 -178576490 + AT_rich Low_complexity Low_complexity 1 29 0 1734 203 114 31 chr4 5712218 5713218 -178575444 + SATR1 Satellite Satellite 1 1083 -131 3478 219 16 62 chr4 5713491 5714507 -178574155 - LTR5 LTR ERVK 0 969 1 34 24 0 0 chr4 5714968 5715009 -178573653 + AT_rich Low_complexity Low_complexity 1 41 0 2774 245 24 39 chr4 5715020 5715270 -178573392 - L1MB3 LINE L1 -30 6153 5901 1914 124 36 0 chr4 5715270 5715544 -178573118 - AluSx SINE Alu -17 295 12 2774 245 24 39 chr4 5715544 5715644 -178573018 - L1MB3 LINE L1 -282 5901 5801 230 81 27 0 chr4 5715644 5715681 -178572981 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 1708 178 0 3 chr4 5715683 5715976 -178572686 - AluSx SINE Alu -12 300 9 2774 245 24 39 chr4 5715976 5716977 -178571685 - L1MB3 LINE L1 -383 5800 4818 2109 122 6 3 chr4 5717022 5717334 -178571328 + AluSp SINE Alu 1 313 0 1187 214 18 68 chr4 5717420 5717619 -178571043 - L1MA4 LINE L1 -170 6130 5958 1691 163 3 3 chr4 5717619 5717902 -178570760 - AluSx SINE Alu -29 283 1 1187 214 18 68 chr4 5717902 5718085 -178570577 - L1MA4 LINE L1 -342 5958 5767 282 259 105 35 chr4 5718123 5718266 -178570396 + HsTC2 DNA Tc2 1633 1785 -113 1971 151 0 34 chr4 5718271 5718595 -178570067 + AluSp SINE Alu 1 313 0 309 313 20 14 chr4 5718737 5718884 -178569778 + MER5B DNA MER1_type 25 172 -6 701 230 46 0 chr4 5718988 5719184 -178569478 - MER6B DNA MER2_type -1 209 5 1304 146 27 18 chr4 5721074 5721294 -178567368 + AluSq SINE Alu 1 222 -91 1945 186 119 24 chr4 5721299 5723156 -178565506 + SATR1 Satellite Satellite 1 2035 -62 1683 211 110 27 chr4 5723167 5723735 -178564927 + SATR1 Satellite Satellite 1 615 -20 27241 104 11 10 chr4 5723735 5727790 -178560872 - HERVE LTR ERV1 -2648 5165 1108 239 207 7 64 chr4 5727844 5727984 -178560678 + (TAA)n Simple_repeat Simple_repeat 1 132 0 1819 217 113 12 chr4 5728137 5729893 -178558769 + SATR1 Satellite Satellite 1 1933 -130 25122 108 12 12 chr4 5729900 5733732 -178554930 - HERVE LTR ERV1 -2869 4944 1110 292 219 5 59 chr4 5733795 5733982 -178554680 + (TAA)n Simple_repeat Simple_repeat 2 178 0 22 70 0 0 chr4 5733985 5734028 -178554634 + AT_rich Low_complexity Low_complexity 1 43 0 1404 240 122 40 chr4 5734075 5735067 -178553595 + SATR1 Satellite Satellite 1 1073 -144 554 227 258 2 chr4 5735168 5735444 -178553218 + SATR1 Satellite Satellite 1 346 -144 806 204 251 57 chr4 5735502 5735909 -178552753 + SATR1 Satellite Satellite 1 485 -2 863 235 206 40 chr4 5735929 5737226 -178551436 + SATR1 Satellite Satellite 1 1512 -405 2039 128 7 3 chr4 5738917 5739221 -178549441 + AluSq SINE Alu 1 305 -8 186 276 105 13 chr4 5739314 5739390 -178549272 - L2 LINE L2 -32 3240 3158 1904 103 0 8 chr4 5739644 5739905 -178548757 - AluSg SINE Alu -51 259 1 269 371 48 14 chr4 5740269 5740479 -178548183 + MIR SINE MIR 32 248 -14 34 0 0 0 chr4 5741267 5741301 -178547361 + AT_rich Low_complexity Low_complexity 1 34 0 2867 244 23 32 chr4 5741321 5741568 -178547094 - L1MB3 LINE L1 -32 6151 5903 1984 161 0 0 chr4 5741568 5741873 -178546789 - AluSx SINE Alu -7 305 1 2867 244 23 32 chr4 5741873 5741975 -178546687 - L1MB3 LINE L1 -280 5903 5802 2058 130 3 3 chr4 5741975 5742302 -178546360 - AluSx SINE Alu 0 327 1 2867 244 23 32 chr4 5742302 5743295 -178545367 - L1MB3 LINE L1 -381 5802 4818 2308 104 3 3 chr4 5743340 5743649 -178545013 + AluSp SINE Alu 1 309 -4 1151 199 2 108 chr4 5743728 5743951 -178544711 - L1MA4 LINE L1 -170 6130 5968 1682 187 0 3 chr4 5743951 5744235 -178544427 - AluSx SINE Alu -29 283 1 1151 199 2 108 chr4 5744235 5744418 -178544244 - L1MA4 LINE L1 -332 5968 5767 300 259 101 29 chr4 5744460 5744599 -178544063 + HsTC2 DNA Tc2 1635 1783 -115 2183 108 0 57 chr4 5744604 5744936 -178543726 + AluSp SINE Alu 1 313 0 339 272 88 0 chr4 5745131 5745245 -178543417 + MER5B DNA MER1_type 50 173 -5 320 173 37 12 chr4 5745349 5745430 -178543232 - MER6 DNA MER2_type 0 865 783 221 297 31 0 chr4 5746604 5746668 -178541994 + MER91 DNA MER1_type 125 190 0 1601 203 22 30 chr4 5746830 5747195 -178541467 - MLT1A1 LTR MaLR -3 362 1 739 313 114 16 chr4 5747753 5748251 -178540411 - L1ME3A LINE L1 -208 5962 5416 322 274 10 70 chr4 5748757 5748958 -178539704 + L1ME4a LINE L1 5676 5864 -257 223 320 152 8 chr4 5748992 5749117 -178539545 - MER5A DNA MER1_type -3 186 44 * 380 291 90 8 chr4 5749007 5749141 -178539521 + MER5A DNA MER1_type 37 181 -8 2308 113 0 0 chr4 5749290 5749590 -178539072 + AluSq SINE Alu 1 300 -13 1579 173 40 23 chr4 5749603 5749776 -178538886 - AluJo SINE Alu -7 305 123 216 0 0 0 chr4 5749776 5749800 -178538862 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1579 173 40 23 chr4 5749800 5749926 -178538736 - AluJo SINE Alu -189 123 1 331 214 60 0 chr4 5749968 5750052 -178538610 - MER20 DNA MER1_type -12 207 119 875 234 5 0 chr4 5750077 5750291 -178538371 + L1MA4 LINE L1 6071 6285 -15 33 0 0 0 chr4 5750298 5750331 -178538331 + AT_rich Low_complexity Low_complexity 1 33 0 288 194 32 16 chr4 5750331 5750393 -178538269 - MER20 DNA MER1_type -152 67 5 29 0 0 0 chr4 5750591 5750620 -178538042 + AT_rich Low_complexity Low_complexity 1 29 0 554 297 76 34 chr4 5750652 5751151 -178537511 + L1ME4a LINE L1 5578 6097 -24 239 286 43 0 chr4 5752237 5752307 -178536355 + MIR SINE MIR 117 189 -73 1477 268 90 39 chr4 5752484 5753048 -178535614 + MLT1E LTR MaLR 1 593 0 1764 144 25 9 chr4 5753093 5753166 -178535496 - MER2 DNA MER2_type 0 345 275 2243 114 3 13 chr4 5753166 5753481 -178535181 + AluSx SINE Alu 1 312 0 1764 144 25 9 chr4 5753481 5753726 -178534936 - MER2 DNA MER2_type -70 275 22 1060 293 157 39 chr4 5753728 5754878 -178533784 + L2 LINE L2 2006 3308 -5 225 250 19 0 chr4 5754878 5754930 -178533732 + GA-rich Low_complexity Low_complexity 1 53 0 1402 249 99 43 chr4 5754982 5755495 -178533167 + MLT1H1 LTR MaLR 14 555 0 293 265 20 20 chr4 5755496 5755598 -178533064 + L2 LINE L2 2291 2392 -922 1361 193 68 0 chr4 5755714 5756035 -178532627 + L1MB3 LINE L1 5839 6181 -2 21 26 0 26 chr4 5756864 5756881 -178531781 + AT_rich Low_complexity Low_complexity 1 17 -21 2119 118 0 3 chr4 5756881 5757168 -178531494 + AluSx SINE Alu 1 286 -26 21 26 0 26 chr4 5757168 5757189 -178531473 + AT_rich Low_complexity Low_complexity 17 38 0 248 284 95 14 chr4 5757326 5757400 -178531262 + L2 LINE L2 3188 3267 -5 394 281 98 66 chr4 5757891 5758318 -178530344 + L2 LINE L2 2553 3008 -264 249 105 0 0 chr4 5758406 5758444 -178530218 + MLT1J1 LTR MaLR 71 108 -338 422 308 60 34 chr4 5758464 5758730 -178529932 + MLT1J LTR MaLR 237 509 -2 328 306 96 25 chr4 5758816 5758973 -178529689 + L2 LINE L2 3097 3264 -8 2396 154 16 34 chr4 5759054 5759117 -178529545 + L1PA16 LINE L1 5724 5787 -379 1765 137 10 58 chr4 5759117 5759245 -178529417 + AluJo SINE Alu 6 139 -173 2072 108 0 17 chr4 5759245 5759540 -178529122 + AluSq SINE Alu 1 290 -23 1765 137 10 58 chr4 5759540 5759724 -178528938 + AluJo SINE Alu 139 303 -9 2396 154 16 34 chr4 5759724 5760108 -178528554 + L1PA16 LINE L1 5787 6163 -3 191 88 29 0 chr4 5761346 5761380 -178527282 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 469 248 0 54 chr4 5761399 5761548 -178527114 + L1ME4a LINE L1 5965 6105 -16 2072 103 7 10 chr4 5761884 5762184 -178526478 + AluSx SINE Alu 1 299 -13 351 0 0 0 chr4 5762213 5762252 -178526410 + (GA)n Simple_repeat Simple_repeat 1 39 0 244 277 12 12 chr4 5762258 5762341 -178526321 + L1ME LINE L1 5741 5823 -298 1763 168 3 0 chr4 5762379 5762688 -178525974 - AluJo SINE Alu -2 310 1 243 305 84 0 chr4 5762909 5763004 -178525658 - MER112 DNA MER1_type -131 129 27 1969 69 76 4 chr4 5763191 5763467 -178525195 + AluY SINE Alu 1 296 -15 1480 181 0 22 chr4 5763521 5763836 -178524826 - AluJo SINE Alu -1 311 4 221 224 94 47 chr4 5763931 5764016 -178524646 - MIR3 SINE MIR -7 201 113 * 430 294 87 0 chr4 5764000 5764126 -178524536 + MIR SINE MIR 28 164 -98 2091 117 0 0 chr4 5764128 5764448 -178524214 + AluSg SINE Alu 1 320 0 456 19 0 0 chr4 5764449 5764502 -178524160 + (CA)n Simple_repeat Simple_repeat 2 54 0 515 233 57 62 chr4 5764660 5764836 -178523826 - MIR3 SINE MIR -4 204 30 615 274 65 47 chr4 5766089 5766366 -178522296 + MLT1L LTR MaLR 201 482 -133 187 248 22 146 chr4 5766368 5766505 -178522157 - MIR SINE MIR -141 121 2 213 39 0 0 chr4 5767702 5767728 -178520934 + (TG)n Simple_repeat Simple_repeat 1 26 0 2176 94 3 10 chr4 5767736 5768043 -178520619 - AluSg SINE Alu -5 305 1 281 297 94 23 chr4 5768275 5768403 -178520259 + MER34B LTR ERV1 23 159 -406 553 261 42 50 chr4 5768515 5768756 -178519906 + MER34B LTR ERV1 324 562 -3 225 109 0 109 chr4 5768757 5768803 -178519859 - MIR SINE MIR -115 147 107 260 279 38 0 chr4 5769271 5769350 -178519312 + MER117 DNA MER1_type 59 140 -57 423 280 143 23 chr4 5769669 5769844 -178518818 + MIR SINE MIR 57 252 -10 189 293 35 0 chr4 5769855 5769913 -178518749 - L2 LINE L2 0 3272 3213 235 306 42 0 chr4 5769946 5770018 -178518644 - MIR SINE MIR -10 252 178 397 281 169 47 chr4 5770201 5770521 -178518141 + L1ME4a LINE L1 5747 6105 -16 3059 151 27 23 chr4 5770526 5770710 -178517952 + L1MB2 LINE L1 5606 5788 -383 2559 112 112 109 chr4 5770710 5771372 -178517290 - MER4A LTR ERV1 0 664 1 3059 151 27 23 chr4 5771372 5771751 -178516911 + L1MB2 LINE L1 5788 6171 0 302 328 25 8 chr4 5772423 5772545 -178516117 + L2 LINE L2 2670 2793 -521 668 303 78 18 chr4 5772549 5772767 -178515895 - MIR SINE MIR -9 253 23 1892 176 37 29 chr4 5773292 5773510 -178515152 - MLT1B LTR MaLR -11 379 155 2019 130 7 0 chr4 5773510 5773809 -178514853 + AluSq SINE Alu 1 301 -12 1892 176 37 29 chr4 5773809 5773966 -178514696 - MLT1B LTR MaLR -235 155 1 510 313 72 15 chr4 5774085 5774350 -178514312 - MARNA DNA Mariner -230 356 77 230 271 0 0 chr4 5774361 5774409 -178514253 + MIR SINE MIR 86 133 -75 760 176 0 61 chr4 5774414 5774579 -178514083 + L1MA9 LINE L1 5814 5968 -344 872 163 17 22 chr4 5774579 5774757 -178513905 + FRAM SINE Alu 1 176 0 1393 190 57 10 chr4 5774763 5775063 -178513599 + L1MA9 LINE L1 5959 6272 -40 545 217 34 63 chr4 5775346 5775521 -178513141 + L1MB8 LINE L1 6004 6173 -5 1878 218 35 2 chr4 5776053 5776485 -178512177 + L1MB3 LINE L1 4829 5274 -872 1329 166 16 4 chr4 5776484 5776731 -178511931 - L1MB3 LINE L1 -235 5948 5699 * 4521 157 37 37 chr4 5776732 5776769 -178511893 + L1MB3 LINE L1 5263 5299 -884 1896 132 3 3 chr4 5776769 5777058 -178511604 + AluSq SINE Alu 1 289 -24 4521 157 37 37 chr4 5777058 5777939 -178510723 + L1MB3 LINE L1 5298 6181 -2 546 120 0 0 chr4 5777963 5778038 -178510624 + AluJ/FLAM SINE Alu 3 77 -235 22 56 0 0 chr4 5778061 5778097 -178510565 + AT_rich Low_complexity Low_complexity 1 36 0 248 304 76 0 chr4 5778130 5778209 -178510453 + L2 LINE L2 3168 3252 -20 1973 108 11 3 chr4 5778341 5778628 -178510034 + AluSp SINE Alu 1 289 -24 392 182 3 85 chr4 5778633 5778754 -178509908 + L1MD3 LINE L1 7660 7789 -206 1917 141 0 16 chr4 5778754 5779060 -178509602 - AluSx SINE Alu -11 301 1 392 182 3 85 chr4 5779060 5779079 -178509583 + L1MD3 LINE L1 7789 7995 0 1014 199 16 0 chr4 5779832 5780018 -178508644 - MER5A DNA MER1_type 0 189 1 230 328 0 0 chr4 5780146 5780207 -178508455 - L2 LINE L2 -2 3311 3251 326 292 76 7 chr4 5780289 5780433 -178508229 + HAL1b LINE L1 397 550 -798 723 240 35 58 chr4 5780460 5780718 -178507944 - L2 LINE L2 -4 3309 3058 2122 115 0 0 chr4 5781071 5781367 -178507295 + AluSx SINE Alu 1 296 -16 2022 122 3 3 chr4 5781607 5781903 -178506759 + AluSq SINE Alu 1 296 -17 611 271 101 95 chr4 5781949 5782382 -178506280 + L1MEc LINE L1 2105 2489 -3726 2232 52 21 7 chr4 5782382 5782671 -178505991 + AluY SINE Alu 2 294 -17 611 271 101 95 chr4 5782671 5782715 -178505947 + L1MEc LINE L1 2489 2531 -3684 243 170 0 0 chr4 5782733 5782780 -178505882 + (TA)n Simple_repeat Simple_repeat 2 48 0 226 292 0 0 chr4 5782781 5782870 -178505792 - L1MC4 LINE L1 -1340 6702 6614 302 341 0 0 chr4 5782870 5782952 -178505710 + L1MC4 LINE L1 6622 6703 -1339 * 382 272 0 22 chr4 5782904 5782996 -178505666 - L1MC4 LINE L1 -1339 6703 6614 * 394 300 0 0 chr4 5782964 5783054 -178505608 + L1MC4 LINE L1 6614 6703 -1339 837 121 0 0 chr4 5783055 5783179 -178505483 - AluSp/q SINE Alu -14 299 176 346 327 119 0 chr4 5783225 5783393 -178505269 + L1MEc LINE L1 2627 2814 -3401 795 226 40 32 chr4 5783395 5783627 -178505035 + MIR SINE MIR 23 261 -1 382 340 47 0 chr4 5783805 5783955 -178504707 - L3 LINE CR1 -15 1562 1406 938 116 0 0 chr4 5783968 5784173 -178504489 - AluSx SINE Alu 0 356 152 1062 159 0 53 chr4 5784176 5784402 -178504260 + AluJo SINE Alu 97 310 -2 259 286 132 22 chr4 5784592 5784683 -178503979 + L2 LINE L2 3164 3264 -49 1123 75 20 0 chr4 5784715 5784862 -178503800 - AluSx SINE Alu -162 150 1 210 118 0 0 chr4 5784957 5784991 -178503671 + (TCCA)n Simple_repeat Simple_repeat 1 34 0 470 304 120 0 chr4 5785002 5785193 -178503469 - L2 LINE L2 0 3313 3100 185 244 0 0 chr4 5785453 5785494 -178503168 - L3 LINE CR1 -582 995 955 214 310 86 52 chr4 5785505 5785679 -178502983 - L3 LINE CR1 -1133 444 265 199 239 0 22 chr4 5785919 5785965 -178502697 - MIR SINE MIR -63 145 101 332 278 18 71 chr4 5786129 5786298 -178502364 + L2 LINE L2 2305 2464 -850 360 64 0 0 chr4 5786333 5786380 -178502282 + (TGGA)n Simple_repeat Simple_repeat 4 50 0 282 56 0 0 chr4 5786497 5786533 -178502129 + (GGAGAA)n Simple_repeat Simple_repeat 5 40 0 1870 119 44 10 chr4 5786552 5786847 -178501815 + AluSx SINE Alu 1 305 -7 210 145 0 48 chr4 5786857 5786919 -178501743 + (GGGAGA)n Simple_repeat Simple_repeat 3 61 0 * 310 200 24 41 chr4 5786913 5787001 -178501661 + GA-rich Low_complexity Low_complexity 1 86 -81 2267 102 0 0 chr4 5787001 5787306 -178501356 + AluSg SINE Alu 1 305 -5 310 200 24 41 chr4 5787306 5787387 -178501275 + GA-rich Low_complexity Low_complexity 86 167 0 292 227 19 143 chr4 5787897 5788052 -178500610 - MIR SINE MIR -44 164 28 1518 190 13 3 chr4 5788213 5788513 -178500149 + AluJo SINE Alu 1 303 -9 220 240 29 29 chr4 5790194 5790298 -178498364 + (CCCG)n Simple_repeat Simple_repeat 2 105 0 562 204 68 34 chr4 5791114 5791261 -178497401 + MER45A DNA AcHobo 27 178 0 300 257 83 76 chr4 5791350 5791494 -178497168 - L2 LINE L2 0 3313 3169 198 0 0 0 chr4 5791686 5791708 -178496954 + (TTTC)n Simple_repeat Simple_repeat 2 23 0 1610 155 7 40 chr4 5791710 5792014 -178496648 - AluJo SINE Alu -18 294 1 506 240 154 0 chr4 5792149 5792324 -178496338 + MLT1J1 LTR MaLR 238 439 -7 1870 112 14 11 chr4 5792434 5792719 -178495943 - AluSg SINE Alu -24 286 1 1880 93 17 42 chr4 5792814 5793103 -178495559 + AluSx SINE Alu 21 302 -10 5418 50 19 0 chr4 5793451 5794126 -178494536 - L1PA5 LINE L1 0 6154 5467 1551 118 0 65 chr4 5794308 5794630 -178494032 - AluSg SINE Alu -9 301 1 1796 237 24 26 chr4 5794633 5795101 -178493561 - MLT1C LTR MaLR 0 467 1 2674 142 19 54 chr4 5795109 5795234 -178493428 + L1MA8 LINE L1 5719 5847 -444 1666 159 3 41 chr4 5795234 5795378 -178493284 + AluJb SINE Alu 1 149 -163 1976 78 103 4 chr4 5795378 5795659 -178493003 + AluSp SINE Alu 2 310 -3 1666 159 3 41 chr4 5795659 5795829 -178492833 + AluJb SINE Alu 149 303 -9 2674 142 19 54 chr4 5795829 5796224 -178492438 + L1MA8 LINE L1 5847 6221 -70 7558 111 54 11 chr4 5796229 5797385 -178491277 - HSMAR2 DNA Mariner -5 1297 93 309 262 123 41 chr4 5797898 5798020 -178490642 - MIR SINE MIR -7 255 124 760 129 313 0 chr4 5798025 5798172 -178490490 - MER46A DNA MER2_type 0 236 44 198 274 39 0 chr4 5798194 5798245 -178490417 - MIR SINE MIR -165 97 45 23 0 0 0 chr4 5798502 5798525 -178490137 + AT_rich Low_complexity Low_complexity 1 23 0 873 136 8 0 chr4 5799100 5799232 -178489430 + FLAM_A SINE Alu 1 133 0 212 331 58 52 chr4 5799423 5799595 -178489067 - L2 LINE L2 -3061 253 81 1131 183 0 24 chr4 5800396 5800609 -178488053 + AluJo SINE Alu 85 292 -20 1817 146 3 13 chr4 5801707 5802008 -178486654 + AluJb SINE Alu 1 298 -14 375 297 65 7 chr4 5802016 5802171 -178486491 + L1ME4a LINE L1 5956 6119 -2 357 282 35 7 chr4 5802260 5802402 -178486260 + L1MC4a LINE L1 5753 5898 -1910 892 253 80 118 chr4 5802407 5803043 -178485619 + L1ME3A LINE L1 5559 6170 0 2085 107 3 28 chr4 5803750 5804068 -178484594 + AluSp SINE Alu 1 310 -3 544 276 144 0 chr4 5804628 5804802 -178483860 + MIR SINE MIR 13 211 -51 2018 119 3 19 chr4 5804850 5805162 -178483500 - AluSx SINE Alu -5 307 1 380 201 166 14 chr4 5805269 5805408 -178483254 + MER106B DNA MER1_type 865 1024 -35 292 43 109 0 chr4 5805401 5805447 -178483215 - MER106A DNA MER1_type -13 223 173 * 2207 98 0 0 chr4 5805478 5805773 -178482889 - AluSq SINE Alu -18 295 1 226 271 224 28 chr4 5805819 5805926 -178482736 - MER5B DNA MER1_type 0 178 51 2362 45 0 10 chr4 5806045 5806336 -178482326 - AluY SINE Alu -23 288 1 193 294 0 0 chr4 5806714 5806765 -178481897 + MIR SINE MIR 59 109 -99 1847 131 13 23 chr4 5807148 5807453 -178481209 + AluJb SINE Alu 1 302 -10 516 126 0 0 chr4 5808632 5808719 -178479943 - L1MA9 LINE L1 0 6312 6226 279 157 0 0 chr4 5808730 5808781 -178479881 + (TA)n Simple_repeat Simple_repeat 2 52 0 1147 135 53 55 chr4 5808781 5809020 -178479642 - L1MA9 LINE L1 -15 6285 6007 191 175 79 79 chr4 5809024 5809087 -178479575 + L2 LINE L2 3202 3264 -8 2039 77 0 58 chr4 5809708 5810018 -178478644 - AluSg SINE Alu -18 292 1 286 236 89 102 chr4 5810060 5810217 -178478445 + MIR3 SINE MIR 36 190 -18 362 279 127 35 chr4 5810651 5810848 -178477814 - L1MC/D LINE L1 -2018 5790 5576 300 266 65 81 chr4 5811970 5812094 -178476568 - L2 LINE L2 -14 3258 3137 181 200 25 0 chr4 5812137 5812177 -178476485 - L2 LINE L2 -1 3271 3231 2033 106 23 0 chr4 5812466 5812769 -178475893 + AluSg SINE Alu 1 310 0 186 103 0 0 chr4 5812891 5812920 -178475742 + (T)n Simple_repeat Simple_repeat 1 29 0 2050 114 3 43 chr4 5813346 5813670 -178474992 + AluSq SINE Alu 1 311 -2 326 289 250 19 chr4 5813814 5814022 -178474640 + MIR SINE MIR 7 262 0 921 253 37 17 chr4 5814614 5814855 -178473807 + MIR SINE MIR 17 262 0 22 0 0 0 chr4 5814893 5814915 -178473747 + AT_rich Low_complexity Low_complexity 1 22 0 363 169 26 39 chr4 5815027 5815104 -178473558 + MIR SINE MIR 187 262 0 1403 80 0 50 chr4 5815275 5815476 -178473186 - AluSc SINE Alu -12 297 107 2625 36 0 0 chr4 5815477 5815786 -178472876 - AluY SINE Alu -2 309 1 312 240 69 98 chr4 5815786 5815990 -178472672 - L1MC/D LINE L1 -515 5606 5409 3098 77 47 12 chr4 5816429 5816821 -178471841 + MLT2A1 LTR ERVL 1 411 -33 441 95 0 0 chr4 5816821 5816884 -178471778 + (TA)n Simple_repeat Simple_repeat 1 63 0 3098 77 47 12 chr4 5816884 5816920 -178471742 + MLT2A1 LTR ERVL 411 444 0 779 161 0 0 chr4 5816963 5817081 -178471581 + FLAM_C SINE Alu 1 118 -15 198 103 0 0 chr4 5817084 5817113 -178471549 + (TAA)n Simple_repeat Simple_repeat 3 31 0 275 311 19 0 chr4 5817284 5817390 -178471272 + LTR16C LTR ERVL 17 124 -367 2155 168 73 36 chr4 5818228 5818669 -178469993 - LTR32 LTR ERVL 0 471 15 632 253 104 22 chr4 5818672 5818854 -178469808 + MIR SINE MIR 47 243 -19 380 264 11 0 chr4 5819067 5819154 -178469508 - MIR SINE MIR -60 202 115 2172 107 0 0 chr4 5819430 5819728 -178468934 + AluSx SINE Alu 1 298 -14 648 174 0 3 chr4 5819728 5819843 -178468819 - LTR18A LTR ERVL -6 351 248 703 291 61 5 chr4 5819996 5820192 -178468470 - LTR18A LTR ERVL -147 210 4 398 272 48 48 chr4 5820305 5820452 -178468210 - MER117 DNA MER1_type -49 148 2 3973 99 5 0 chr4 5820669 5821224 -178467438 + L1PA10 LINE L1 5611 6168 0 2116 113 7 0 chr4 5821312 5821622 -178467040 + AluSp SINE Alu 2 313 0 2231 100 7 0 chr4 5821815 5822125 -178466537 + AluSx SINE Alu 1 312 0 285 291 75 15 chr4 5823309 5823443 -178465219 + L1ME3A LINE L1 5524 5665 -497 225 0 0 0 chr4 5823527 5823552 -178465110 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 2097 100 0 0 chr4 5823552 5823832 -178464830 - AluSx SINE Alu -32 280 1 1648 152 0 55 chr4 5823832 5824142 -178464520 - AluJo SINE Alu -14 298 6 554 219 34 0 chr4 5824171 5824290 -178464372 + L1ME3A LINE L1 5850 5972 -198 245 189 344 0 chr4 5824297 5824387 -178464275 + L1ME3A LINE L1 6042 6162 -8 210 289 0 106 chr4 5824763 5824867 -178463795 - MIR SINE MIR -132 130 38 197 33 33 0 chr4 5825346 5825376 -178463286 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1534 133 47 36 chr4 5825378 5825656 -178463006 - AluJo SINE Alu -23 289 9 2373 74 0 3 chr4 5825724 5826036 -178462626 + AluY SINE Alu 1 311 0 2092 92 3 3 chr4 5826798 5827138 -178461524 - AluSp SINE Alu 0 340 1 2142 117 10 0 chr4 5827434 5827743 -178460919 - AluSx SINE Alu 0 312 1 2465 102 36 28 chr4 5828706 5829067 -178459595 + THE1B LTR MaLR 1 364 0 336 298 258 25 chr4 5829362 5829560 -178459102 - MIR SINE MIR -9 253 10 1875 124 34 0 chr4 5830282 5830573 -178458089 + AluSx SINE Alu 1 301 -11 21 0 0 0 chr4 5831636 5831657 -178457005 + AT_rich Low_complexity Low_complexity 1 21 0 2284 198 77 73 chr4 5832040 5832797 -178455865 + L1MD1 LINE L1 14 5423 -1117 732 190 28 0 chr4 5832811 5832953 -178455709 + L1MA9 LINE L1 6108 6253 -59 1414 178 69 4 chr4 5832953 5833229 -178455433 + AluJo SINE Alu 1 294 -18 180 0 0 0 chr4 5833285 5833305 -178455357 + (A)n Simple_repeat Simple_repeat 1 20 0 3777 191 51 72 chr4 5833325 5833898 -178454764 + L1MD1 LINE L1 5437 6020 -616 5536 101 25 6 chr4 5833898 5834701 -178453961 - L1MA2 LINE L1 0 6304 5487 3777 191 51 72 chr4 5834701 5835338 -178453324 + L1MD1 LINE L1 6020 6628 -8 1445 125 32 39 chr4 5835362 5835643 -178453019 - Tigger7 DNA MER2_type 0 2487 2209 557 163 0 0 chr4 5835651 5835737 -178452925 - Tigger7 DNA MER2_type -387 163 78 535 236 0 0 chr4 5836460 5836570 -178452092 - FRAM SINE Alu -67 109 1 2068 122 0 0 chr4 5836971 5837275 -178451387 + AluSx SINE Alu 1 304 -8 182 204 0 19 chr4 5837613 5837667 -178450995 + CT-rich Low_complexity Low_complexity 3 55 0 504 309 52 14 chr4 5838136 5838348 -178450314 + MIR SINE MIR 21 248 -14 906 188 14 29 chr4 5838466 5838674 -178449988 - AluJb SINE Alu -9 303 99 2140 110 0 0 chr4 5838738 5839028 -178449634 - AluSx SINE Alu -22 290 1 195 264 75 0 chr4 5839256 5839309 -178449353 + MIR SINE MIR 50 106 -156 1001 90 0 0 chr4 5839463 5839597 -178449065 + AluSp/q SINE Alu 171 304 -9 2079 114 0 3 chr4 5839608 5839905 -178448757 + AluSx SINE Alu 1 296 -16 2091 112 0 0 chr4 5840093 5840378 -178448284 - AluSx SINE Alu -24 288 4 180 332 127 9 chr4 5840577 5840806 -178447856 + L2 LINE L2 2999 3254 -59 235 200 52 13 chr4 5841643 5841758 -178446904 + L2 LINE L2 3101 3272 0 * 486 265 15 22 chr4 5841757 5841893 -178446769 - MIR SINE MIR -108 154 20 1877 137 3 29 chr4 5842077 5842390 -178446272 + AluSx SINE Alu 1 305 -7 2885 179 39 20 chr4 5842937 5843581 -178445081 + L1 LINE L1 4104 4759 -1387 2020 95 51 3 chr4 5844359 5844655 -178444007 - AluSg SINE Alu 0 310 1 2043 93 0 0 chr4 5846215 5846485 -178442177 - AluSg SINE Alu -40 270 1 1065 221 55 0 chr4 5847006 5847223 -178441439 - MIR SINE MIR -3 259 31 2326 63 3 16 chr4 5849683 5849998 -178438664 - AluY SINE Alu 0 311 1 299 267 110 20 chr4 5850583 5850729 -178437933 - MIR SINE MIR -60 202 44 195 297 144 8 chr4 5851130 5851248 -178437414 + MIR SINE MIR 79 212 -50 2223 111 0 0 chr4 5851524 5851831 -178436831 - AluSx SINE Alu -5 307 1 264 291 36 45 chr4 5851960 5852070 -178436592 + MIR3 SINE MIR 85 193 -15 306 244 39 0 chr4 5852194 5852272 -178436390 - MIR SINE MIR -70 192 112 249 197 14 113 chr4 5852336 5852407 -178436255 - L2 LINE L2 -20 3252 3189 653 253 96 35 chr4 5852505 5852734 -178435928 - MIR SINE MIR -8 254 12 454 143 220 0 chr4 5852826 5852917 -178435745 + MER81 DNA DNA 4 114 0 553 260 33 20 chr4 5853852 5854002 -178434660 + MIR SINE MIR 108 259 -3 302 211 14 56 chr4 5854000 5854071 -178434591 + L2 LINE L2 3246 3313 0 * 1877 140 31 63 chr4 5854188 5854539 -178434123 - MLT1B LTR MaLR 0 390 51 208 290 122 19 chr4 5854765 5854872 -178433790 + L2 LINE L2 2965 3082 -190 882 97 0 62 chr4 5854893 5855037 -178433625 + AluSc SINE Alu 1 135 -174 1962 122 0 26 chr4 5855038 5855341 -178433321 + AluSx SINE Alu 4 298 -14 354 282 154 26 chr4 5855367 5855484 -178433178 + L2 LINE L2 3139 3270 -2 359 155 19 126 chr4 5856056 5856159 -178432503 - MIR3 SINE MIR -5 203 112 443 289 10 0 chr4 5856161 5856265 -178432397 - L2 LINE L2 -2 3270 3166 294 172 11 151 chr4 5856475 5856568 -178432094 + MIR SINE MIR 11 90 -172 929 241 49 0 chr4 5856582 5856785 -178431877 - MLT1H1 LTR MaLR 0 555 343 539 292 82 18 chr4 5856826 5857045 -178431617 - MLT1H1 LTR MaLR -316 239 7 581 177 161 0 chr4 5857053 5857177 -178431485 + MIR SINE MIR 118 261 -1 1956 123 7 0 chr4 5857415 5857699 -178430963 - AluSx SINE Alu -26 286 1 465 19 0 0 chr4 5857917 5857971 -178430691 + (TG)n Simple_repeat Simple_repeat 2 55 0 520 304 117 26 chr4 5857995 5858172 -178430490 + MIR SINE MIR 6 210 -52 1748 146 80 50 chr4 5858172 5858536 -178430126 - THE1C LTR MaLR 0 375 1 520 304 117 26 chr4 5858536 5858588 -178430074 + MIR SINE MIR 210 256 -6 2306 126 27 36 chr4 5859353 5859718 -178428944 + THE1B LTR MaLR 3 364 0 2150 113 3 0 chr4 5860112 5860423 -178428239 - AluSx SINE Alu 0 312 1 1570 188 41 3 chr4 5860556 5860848 -178427814 + AluJo SINE Alu 1 303 -9 342 250 86 17 chr4 5860983 5861099 -178427563 + MER5A DNA MER1_type 38 161 -28 396 255 301 0 chr4 5861108 5861261 -178427401 - MIR SINE MIR -15 247 49 1816 149 3 14 chr4 5861483 5861772 -178426890 - AluJb SINE Alu -21 291 6 375 220 120 10 chr4 5861954 5862054 -178426608 + L2 LINE L2 3171 3281 -32 438 247 320 1 chr4 5862100 5862340 -178426322 + L2 LINE L2 2745 3045 -268 22 0 0 0 chr4 5862554 5862576 -178426086 + AT_rich Low_complexity Low_complexity 1 22 0 690 190 71 11 chr4 5862636 5862797 -178425865 - MER3 DNA MER1_type -65 144 5 378 0 0 0 chr4 5862825 5862867 -178425795 + (TG)n Simple_repeat Simple_repeat 1 42 0 25 0 0 0 chr4 5863650 5863675 -178424987 + AT_rich Low_complexity Low_complexity 1 25 0 922 140 0 0 chr4 5863711 5863854 -178424808 + FRAM SINE Alu 22 164 -12 249 140 0 0 chr4 5866783 5866840 -178421822 + (TC)n Simple_repeat Simple_repeat 2 58 0 2120 99 27 0 chr4 5867284 5867577 -178421085 - AluSx SINE Alu -11 301 1 732 241 141 0 chr4 5867726 5867917 -178420745 + Charlie1 DNA MER1_type 2 219 -2542 732 190 36 0 chr4 5867911 5868048 -178420614 + Charlie1 DNA MER1_type 2620 2761 0 42 20 0 0 chr4 5868203 5868252 -178420410 + AT_rich Low_complexity Low_complexity 1 49 0 213 290 43 0 chr4 5869731 5869800 -178418862 - L2 LINE L2 0 3272 3201 883 226 49 25 chr4 5870420 5870663 -178417999 + MIR SINE MIR 2 250 -12 309 248 34 39 chr4 5870815 5870918 -178417744 + MIR SINE MIR 87 191 -62 417 206 46 122 chr4 5871073 5871141 -178417521 - MER5B DNA MER1_type -55 123 51 207 0 0 0 chr4 5871141 5871164 -178417498 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2006 104 0 4 chr4 5871166 5871445 -178417217 - AluSg SINE Alu -32 278 1 417 206 46 122 chr4 5871445 5871504 -178417158 - MER5B DNA MER1_type -128 50 3 197 311 22 11 chr4 5872576 5872666 -178415996 + L3 LINE CR1 1268 1358 -219 503 308 92 25 chr4 5873326 5873566 -178415096 + MIR SINE MIR 7 262 0 2347 65 0 32 chr4 5873580 5873890 -178414772 - AluY SINE Alu -11 300 1 245 167 0 0 chr4 5876867 5876909 -178411753 + MER94 DNA DNA 70 111 -23 255 330 126 10 chr4 5876960 5877063 -178411599 - L2 LINE L2 -2 3270 3156 2040 129 0 3 chr4 5877441 5877750 -178410912 - AluSx SINE Alu -4 308 1 385 304 50 12 chr4 5877879 5878040 -178410622 + MIR SINE MIR 90 256 -6 289 363 40 0 chr4 5879198 5879322 -178409340 - L2 LINE L2 -3 3269 3141 769 143 75 8 chr4 5879977 5880110 -178408552 + AluSg/x SINE Alu 144 285 -27 1394 180 54 14 chr4 5880400 5880694 -178407968 - L1MB7 LINE L1 -9 6175 5870 309 194 16 0 chr4 5880699 5880761 -178407901 - L1MB7 LINE L1 -473 5705 5643 2091 107 30 3 chr4 5881412 5881712 -178406950 + AluSx SINE Alu 1 308 -4 1811 152 16 10 chr4 5881961 5882271 -178406391 - AluJo SINE Alu 0 312 1 1563 147 15 4 chr4 5882617 5882876 -178405786 + AluSx SINE Alu 1 262 -50 1571 117 0 25 chr4 5882882 5883121 -178405541 + AluSq SINE Alu 29 261 -52 842 168 173 11 chr4 5883518 5883697 -178404965 + AluJo SINE Alu 85 292 -20 195 293 103 60 chr4 5884990 5885106 -178403556 + MIR SINE MIR 31 151 -111 683 279 202 70 chr4 5885963 5886045 -178402617 + L2 LINE L2 1334 1404 -1910 1998 116 36 0 chr4 5886045 5886346 -178402316 + AluSx SINE Alu 1 312 0 683 279 202 70 chr4 5886346 5886552 -178402110 + L2 LINE L2 1404 1581 -1733 936 118 0 22 chr4 5886552 5886688 -178401974 - FLAM_C SINE Alu 0 133 1 683 279 202 70 chr4 5886688 5887183 -178401479 + L2 LINE L2 1581 2009 -1305 3304 136 84 4 chr4 5887183 5887720 -178400942 + LTR19B LTR ERV1 1 580 0 683 279 202 70 chr4 5887720 5887939 -178400723 + L2 LINE L2 2009 2471 -843 1920 130 24 0 chr4 5888111 5888404 -178400258 + AluSg SINE Alu 1 300 -10 246 337 74 0 chr4 5888670 5888765 -178399897 + MIR SINE MIR 38 139 -69 186 259 0 56 chr4 5888916 5888970 -178399692 - MIR3 SINE MIR -7 201 151 301 289 141 15 chr4 5888988 5889123 -178399539 - MER5A DNA MER1_type -29 160 9 189 226 226 0 chr4 5889131 5889184 -178399478 - MIR3 SINE MIR -48 160 96 461 287 71 10 chr4 5889192 5889392 -178399270 - MIR SINE MIR 0 262 48 1523 168 10 24 chr4 5889566 5889857 -178398805 - AluJb SINE Alu -25 287 1 859 133 0 0 chr4 5889867 5889995 -178398667 - FLAM_C SINE Alu -15 128 1 216 0 0 0 chr4 5890222 5890246 -178398416 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1956 53 3 86 chr4 5890249 5890552 -178398110 - AluY SINE Alu -32 279 2 830 174 25 0 chr4 5891196 5891357 -178397305 + L1MB7 LINE L1 5910 6074 -110 1029 214 68 80 chr4 5891357 5891694 -178396968 + MLT1B LTR MaLR 1 359 -108 1431 191 37 0 chr4 5891694 5891966 -178396696 - AluJo SINE Alu -30 282 1 1029 214 68 80 chr4 5891966 5892071 -178396591 + MLT1B LTR MaLR 359 464 -3 677 153 0 0 chr4 5892071 5892182 -178396480 + L1MB4 LINE L1 6067 6177 -3 210 186 0 47 chr4 5892197 5892240 -178396422 + MIR SINE MIR 154 194 -68 1233 116 0 0 chr4 5892421 5892594 -178396068 - AluSg/x SINE Alu -7 305 133 319 248 152 16 chr4 5892745 5892870 -178395792 + MIR SINE MIR 85 226 -36 282 363 18 9 chr4 5892919 5893032 -178395630 + L2 LINE L2 3197 3310 -3 2357 176 19 26 chr4 5893128 5893529 -178395133 + MLT1C LTR MaLR 1 400 -67 2326 75 0 0 chr4 5893529 5893823 -178394839 - AluY SINE Alu -17 294 1 2357 176 19 26 chr4 5893823 5893888 -178394774 + MLT1C LTR MaLR 400 464 -3 804 203 49 93 chr4 5894874 5895120 -178393542 + MLT1B LTR MaLR 1 235 -155 * 1310 194 113 76 chr4 5895119 5895295 -178393367 + MLT1C LTR MaLR 18 186 -281 1485 181 41 0 chr4 5895295 5895566 -178393096 - AluJo SINE Alu -28 284 3 1310 194 113 76 chr4 5895566 5895823 -178392839 + MLT1C LTR MaLR 186 467 0 1852 139 31 0 chr4 5896111 5896399 -178392263 + AluSq SINE Alu 1 297 -16 225 281 31 0 chr4 5896707 5896771 -178391891 + MIR SINE MIR 65 130 -78 1769 126 7 25 chr4 5896805 5897091 -178391571 + AluJb SINE Alu 7 287 -25 765 221 0 54 chr4 5897623 5897809 -178390853 + L1M3 LINE L1 5429 5596 -575 7168 102 18 11 chr4 5897814 5898814 -178389848 - LTR13 LTR ERVK 0 1007 1 2196 119 0 0 chr4 5898839 5899150 -178389512 + AluSx SINE Alu 1 311 -1 1383 93 31 0 chr4 5899188 5899382 -178389280 + AluSq SINE Alu 1 200 -113 25 51 0 0 chr4 5899389 5899428 -178389234 + AT_rich Low_complexity Low_complexity 1 39 0 1403 145 0 0 chr4 5899464 5899678 -178388984 - AluSg/x SINE Alu -16 296 83 451 226 0 0 chr4 5899883 5899967 -178388695 - PABL_B-int LTR ERV1 -449 6673 6590 1948 179 21 6 chr4 5899970 5900300 -178388362 + LTR32 LTR ERVL 14 348 -123 2128 112 3 0 chr4 5900303 5900599 -178388063 - AluSp SINE Alu -16 297 1 810 172 26 13 chr4 5900622 5900773 -178387889 + LTR32 LTR ERVL 319 471 0 690 335 37 41 chr4 5900839 5901352 -178387310 - PABL_B-int LTR ERV1 -598 6524 6014 2253 101 0 0 chr4 5901425 5901733 -178386929 + AluSg SINE Alu 1 308 -2 557 215 178 0 chr4 5901733 5901980 -178386682 + LTR23-int LTR ERV1 2089 2379 -2744 2656 202 88 102 chr4 5902000 5902036 -178386626 + LTR23-int LTR ERV1 3421 3456 -2490 2107 107 0 7 chr4 5902036 5902335 -178386327 + AluSx SINE Alu 1 297 -15 2656 202 88 102 chr4 5902335 5903303 -178385359 + LTR23-int LTR ERV1 3456 4410 -1536 1389 273 37 24 chr4 5903414 5903629 -178385033 + MLT1D LTR MaLR 35 246 -259 2253 116 0 0 chr4 5903629 5903939 -178384723 + AluSx SINE Alu 1 310 -2 1389 273 37 24 chr4 5903939 5904188 -178384474 + MLT1D LTR MaLR 246 505 0 655 295 127 45 chr4 5904188 5904650 -178384012 - MLT1J LTR MaLR -7 504 5 2012 130 0 13 chr4 5904891 5905247 -178383415 - AluSx SINE Alu 0 352 1 1614 127 15 8 chr4 5905617 5905876 -178382786 - MER2 DNA MER2_type -63 282 22 1037 291 158 38 chr4 5905878 5907026 -178381636 + L2 LINE L2 2006 3308 -5 225 250 19 0 chr4 5907026 5907078 -178381584 + GA-rich Low_complexity Low_complexity 1 53 0 1542 246 99 43 chr4 5907130 5907643 -178381019 + MLT1H1 LTR MaLR 14 555 0 281 265 20 20 chr4 5907644 5907746 -178380916 + L2 LINE L2 2291 2392 -922 1392 193 51 21 chr4 5907845 5908183 -178380479 + L1MB3 LINE L1 5829 6181 -2 21 26 0 26 chr4 5909013 5909030 -178379632 + AT_rich Low_complexity Low_complexity 1 17 -21 2111 122 0 3 chr4 5909030 5909317 -178379345 + AluSx SINE Alu 1 286 -26 21 26 0 26 chr4 5909317 5909338 -178379324 + AT_rich Low_complexity Low_complexity 17 38 0 237 284 95 14 chr4 5909475 5909549 -178379113 + L2 LINE L2 3188 3267 -5 326 302 93 61 chr4 5910040 5910467 -178378195 + L2 LINE L2 2553 3008 -264 241 105 0 0 chr4 5910555 5910593 -178378069 + MLT1J1 LTR MaLR 71 108 -338 412 331 49 23 chr4 5910613 5910879 -178377783 + MLT1J LTR MaLR 237 509 -2 324 298 65 24 chr4 5910998 5911122 -178377540 + L2 LINE L2 3136 3264 -8 2274 154 16 34 chr4 5911203 5911266 -178377396 + L1PA16 LINE L1 5724 5787 -379 1936 134 10 58 chr4 5911266 5911394 -178377268 + AluJo SINE Alu 6 139 -173 2226 108 0 17 chr4 5911394 5911689 -178376973 + AluSq SINE Alu 1 290 -23 1936 134 10 58 chr4 5911689 5911873 -178376789 + AluJo SINE Alu 139 303 -9 2274 154 16 34 chr4 5911873 5912257 -178376405 + L1PA16 LINE L1 5787 6163 -3 191 88 29 0 chr4 5913495 5913529 -178375133 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 464 283 7 0 chr4 5913548 5913693 -178374969 + L1ME4a LINE L1 5965 6110 -11 2264 122 3 0 chr4 5914033 5914344 -178374318 + AluSx SINE Alu 1 312 0 2180 126 27 36 chr4 5914738 5915103 -178373559 - THE1B LTR MaLR 0 364 3 218 318 148 34 chr4 5915869 5915921 -178372741 - MIR SINE MIR -6 256 211 1591 154 80 50 chr4 5915921 5916285 -178372377 + THE1C LTR MaLR 1 375 0 218 318 148 34 chr4 5916285 5916408 -178372254 - MIR SINE MIR -51 211 61 2345 101 55 71 chr4 5916960 5917017 -178371645 + MSTC LTR MaLR 1 57 -371 832 139 16 0 chr4 5917017 5917146 -178371516 + FLAM_C SINE Alu 3 133 0 2345 101 55 71 chr4 5917146 5917523 -178371139 + MSTC LTR MaLR 57 428 0 871 196 15 35 chr4 5917819 5918018 -178370644 + MLT1D LTR MaLR 41 235 -270 208 250 18 18 chr4 5918067 5918123 -178370539 - L2 LINE L2 -97 3216 3161 236 130 22 0 chr4 5918452 5918498 -178370164 + (TTCA)n Simple_repeat Simple_repeat 1 47 0 2092 116 0 75 chr4 5918680 5919015 -178369647 - AluSx SINE Alu -2 310 1 2347 113 0 10 chr4 5919120 5919430 -178369232 - AluSx SINE Alu -5 307 1 688 138 9 0 chr4 5919443 5919552 -178369110 - AluJb SINE Alu -12 300 191 225 336 34 48 chr4 5919692 5919839 -178368823 - MER5A DNA MER1_type -28 161 6 269 301 32 0 chr4 5919888 5919981 -178368681 - MER5A DNA MER1_type -84 105 10 1974 121 69 0 chr4 5920043 5920333 -178368329 - AluSg SINE Alu 0 310 1 263 167 0 0 chr4 5920349 5920391 -178368271 - 5S rRNA rRNA -79 42 1 373 213 56 9 chr4 5920470 5920578 -178368084 - MIR SINE MIR -107 155 43 1911 67 14 25 chr4 5920690 5920973 -178367689 - L1PA7 LINE L1 -1 6153 5874 516 275 24 35 chr4 5920974 5921172 -178367490 - MIR SINE MIR -62 146 2 900 238 67 18 chr4 5921206 5921488 -178367174 - MLT1C LTR MaLR 0 467 172 841 152 22 0 chr4 5921537 5921675 -178366987 - AluJo SINE Alu -171 141 1 2308 99 3 0 chr4 5921687 5921979 -178366683 - AluSx SINE Alu -19 293 1 1090 99 0 0 chr4 5922021 5922183 -178366479 + L1PB2 LINE L1 5990 6151 0 482 287 78 62 chr4 5922376 5922634 -178366028 + L1ME LINE L1 5514 5775 -346 996 179 25 0 chr4 5922837 5923033 -178365629 + LTR48B LTR ERV1 1 201 -443 1703 124 24 3 chr4 5923034 5923325 -178365337 - LTR23 LTR ERV1 0 437 141 2149 115 0 0 chr4 5923328 5923607 -178365055 - AluSg SINE Alu -1 309 31 5380 61 103 0 chr4 5923607 5924356 -178364306 - LTR12 LTR ERV1 0 826 1 249 88 0 0 chr4 5924356 5924390 -178364272 - AluSg SINE Alu -266 34 1 569 184 82 54 chr4 5924393 5924540 -178364122 - LTR23 LTR ERV1 -286 151 1 495 216 9 26 chr4 5924661 5924777 -178363885 - LTR23-int LTR ERV1 -223 4900 4787 5128 147 28 14 chr4 5924791 5925805 -178362857 - LTR49-int LTR ERV1 -478 6120 4608 2608 41 0 0 chr4 5925811 5926104 -178362558 + AluY SINE Alu 1 293 -18 1421 113 5 0 chr4 5926205 5926391 -178362271 - AluSg SINE Alu -123 187 1 832 209 83 7 chr4 5926392 5926850 -178361812 + L1MA9 LINE L1 5661 6183 0 2161 209 36 53 chr4 5926873 5926889 -178361773 - MER92B LTR ERV1 -4 632 617 2443 82 7 0 chr4 5926889 5927183 -178361479 + AluSq SINE Alu 1 296 -17 2161 209 36 53 chr4 5927183 5927808 -178360854 - MER92B LTR ERV1 -19 617 2 202 270 11 34 chr4 5927921 5928010 -178360652 - L2 LINE L2 -188 3084 2998 323 183 11 75 chr4 5928115 5928208 -178360454 - LTR33A LTR ERVL -11 512 426 308 237 67 30 chr4 5929461 5929596 -178359066 - MER65B LTR ERV1 -391 140 1 267 236 28 0 chr4 5929674 5929746 -178358916 + MIR SINE MIR 111 184 -78 229 237 75 32 chr4 5929873 5929966 -178358696 + L2 LINE L2 3136 3232 -40 2370 99 0 7 chr4 5930250 5930554 -178358108 + AluSx SINE Alu 1 302 -10 450 143 48 0 chr4 5930748 5930832 -178357830 - AluS SINE Alu 0 309 222 939 266 41 29 chr4 5981312 5981900 -178306762 + L1M4 LINE L1 1100 1710 -4832 1166 235 65 0 chr4 5982019 5982279 -178306383 - MLT1-int LTR MaLR -139 1232 956 2387 222 4 6 chr4 5982675 5983152 -178305510 - MLT1-int LTR MaLR -1073 662 187 694 216 14 7 chr4 5984081 5984220 -178304442 + MLT1A1 LTR MaLR 225 364 -1 631 142 53 18 chr4 5984222 5984335 -178304327 + MLT1A1-int LTR MaLR 2 118 -1617 2174 137 0 15 chr4 5984613 5984955 -178303707 - MER1B DNA MER1_type 0 337 1 536 247 180 10 chr4 5985033 5985333 -178303329 - L1MEc LINE L1 -4418 1978 1628 1082 106 0 73 chr4 5985345 5985524 -178303138 + MLT2A2 LTR ERVL 1 166 -287 896 122 0 0 chr4 5985525 5985640 -178303022 - AluSq/x SINE Alu -198 115 1 283 241 13 25 chr4 5985642 5985721 -178302941 + LTR52 LTR ERVL 16 93 -328 * 704 175 0 17 chr4 5985717 5985837 -178302825 - MLT1A1 LTR MaLR -247 118 1 6897 74 26 5 chr4 5986687 5987648 -178301014 - L1PA11 LINE L1 -1 6173 5209 21 71 0 0 chr4 5987747 5987789 -178300873 + AT_rich Low_complexity Low_complexity 1 42 0 526 270 10 99 chr4 5987801 5988094 -178300568 - L2 LINE L2 -161 3152 2886 363 296 0 74 chr4 5988098 5988260 -178300402 - L2 LINE L2 -985 2329 2180 3861 53 2 0 chr4 5988623 5989096 -178299566 + L1PA8 LINE L1 5467 5940 -232 410 147 29 0 chr4 5989196 5989264 -178299398 - MLT1A2 LTR MaLR -304 70 1 363 250 31 55 chr4 5989267 5989395 -178299267 + MIR3 SINE MIR 69 193 -15 253 29 0 0 chr4 5989683 5989717 -178298945 - MIR SINE MIR -122 140 107 353 290 28 7 chr4 5989964 5990109 -178298553 + MIR3 SINE MIR 13 160 -48 211 254 0 0 chr4 5990170 5990225 -178298437 - MER5A DNA MER1_type -105 84 30 181 49 0 73 chr4 5990325 5990366 -178298296 + (CAAAAA)n Simple_repeat Simple_repeat 6 43 0 333 0 0 0 chr4 5990757 5990794 -178297868 + (CA)n Simple_repeat Simple_repeat 2 38 0 371 291 39 8 chr4 5991008 5991135 -178297527 - MIR SINE MIR -73 189 59 3121 201 55 16 chr4 5991165 5991842 -178296820 - L1MD2 LINE L1 -27 6332 5630 825 248 35 13 chr4 5991920 5992150 -178296512 - MIR SINE MIR -18 244 10 1362 306 15 11 chr4 5992179 5992647 -178296015 - L1ME3A LINE L1 -5 6165 5696 312 287 37 0 chr4 5992656 5992764 -178295898 - L1M4 LINE L1 -3289 2857 2746 1670 166 54 11 chr4 5992764 5993042 -178295620 + AluJb SINE Alu 1 290 -22 2380 107 0 0 chr4 5994357 5994666 -178293996 - AluSq SINE Alu -4 309 1 2322 99 16 0 chr4 5994674 5994977 -178293685 - AluSq SINE Alu -5 308 1 971 155 6 11 chr4 5994981 5995155 -178293507 - MLT1B LTR MaLR -217 173 1 205 62 94 0 chr4 5995283 5995315 -178293347 + L2 LINE L2 3264 3298 -15 381 282 0 9 chr4 5995389 5995499 -178293163 - MIR SINE MIR -83 125 17 236 260 78 0 chr4 5996333 5996410 -178292252 - MIR SINE MIR -72 190 108 480 257 11 73 chr4 5996493 5996561 -178292101 + MIR SINE MIR 78 149 -113 3184 102 42 86 chr4 5996561 5997152 -178291510 + MER34B LTR ERV1 1 565 0 480 257 11 73 chr4 5997152 5997262 -178291400 + MIR SINE MIR 149 245 -17 248 281 35 26 chr4 5997333 5997447 -178291215 - LTR67 LTR ERVL -17 540 426 1932 195 88 27 chr4 5997585 5998061 -178290601 - MLT1D LTR MaLR 0 505 1 887 224 0 0 chr4 5998106 5998276 -178290386 - MER5A DNA MER1_type -19 170 1 2243 224 38 19 chr4 6000236 6000763 -178287899 - MLT1F LTR MaLR 0 542 6 189 361 0 0 chr4 6001737 6001856 -178286806 + L2 LINE L2 2231 2349 -965 2675 152 16 68 chr4 6001886 6001984 -178286678 + L1MB8 LINE L1 5619 5721 -457 2020 141 27 0 chr4 6001984 6002281 -178286381 - AluSx SINE Alu -7 305 1 2675 152 16 68 chr4 6002281 6002755 -178285907 + L1MB8 LINE L1 5721 6161 -17 2132 126 20 0 chr4 6002790 6003091 -178285571 + AluSq SINE Alu 1 307 -6 581 180 0 0 chr4 6003127 6003227 -178285435 + L1M4 LINE L1 5616 5715 -463 349 293 30 30 chr4 6003346 6003479 -178285183 - MIR3 SINE MIR -26 182 50 375 297 109 30 chr4 6004132 6004297 -178284365 - MER91A DNA MER1_type -18 178 1 1738 80 0 24 chr4 6004561 6004810 -178283852 + L1PA8 LINE L1 5930 6172 0 438 20 0 0 chr4 6005333 6005384 -178283278 + (TG)n Simple_repeat Simple_repeat 1 51 0 1042 141 28 89 chr4 6005496 6005709 -178282953 - MER20 DNA MER1_type 0 219 20 280 350 39 56 chr4 6008166 6008346 -178280316 - L2 LINE L2 -2 3270 3094 25 31 0 0 chr4 6008781 6008813 -178279849 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr4 6010321 6010349 -178278313 + AT_rich Low_complexity Low_complexity 1 28 0 2428 82 7 0 chr4 6011385 6011690 -178276972 - AluSg SINE Alu -3 307 1 22 0 0 0 chr4 6016259 6016281 -178272381 + AT_rich Low_complexity Low_complexity 1 22 0 464 188 354 11 chr4 6016593 6016774 -178271888 - MIR SINE MIR -10 252 10 515 295 181 54 chr4 6016854 6017451 -178271211 + L2 LINE L2 2077 2749 -565 355 391 31 65 chr4 6017469 6017791 -178270871 + L2 LINE L2 2962 3272 0 648 321 66 45 chr4 6017913 6018430 -178270232 + MLT1K LTR MaLR 40 567 -21 225 0 0 0 chr4 6018566 6018591 -178270071 + (GAAAA)n Simple_repeat Simple_repeat 4 28 0 555 260 103 18 chr4 6018767 6018990 -178269672 + L3b LINE CR1 1161 1402 -181 328 296 51 0 chr4 6019113 6019211 -178269451 - L2 LINE L2 -1 3271 3169 771 179 8 22 chr4 6020301 6020435 -178268227 + FLAM_A SINE Alu 1 132 -1 423 187 0 0 chr4 6021387 6021494 -178267168 + (TA)n Simple_repeat Simple_repeat 1 107 0 458 227 9 9 chr4 6021769 6021879 -178266783 - LTR33 LTR ERVL -343 178 69 2200 137 38 11 chr4 6021879 6022252 -178266410 + MSTB LTR MaLR 44 426 0 462 259 83 19 chr4 6022288 6022493 -178266169 + LTR16A LTR ERVL 59 276 -174 2196 89 31 0 chr4 6022694 6022987 -178265675 + AluY SINE Alu 1 302 -9 235 244 110 37 chr4 6023374 6023456 -178265206 + MIR SINE MIR 175 262 0 412 226 124 0 chr4 6023760 6023897 -178264765 - L1ME4a LINE L1 0 6121 5968 31 0 0 0 chr4 6023988 6024019 -178264643 + AT_rich Low_complexity Low_complexity 1 31 0 1608 180 0 4 chr4 6024263 6024519 -178264143 - AluSx SINE Alu -57 255 1 334 272 123 31 chr4 6024569 6024731 -178263931 - L1 LINE L1 -1088 5058 4882 216 0 0 0 chr4 6024765 6024789 -178263873 + (CA)n Simple_repeat Simple_repeat 2 25 0 322 334 127 23 chr4 6024833 6025132 -178263530 - L1 LINE L1 -1517 4629 4300 324 338 44 19 chr4 6025546 6025706 -178262956 + L1MC4a LINE L1 5708 5871 -1937 181 73 24 24 chr4 6026056 6026097 -178262565 + (CAAAAA)n Simple_repeat Simple_repeat 3 43 0 494 270 0 0 chr4 6026221 6026336 -178262326 - MIR3 SINE MIR -28 180 66 189 329 14 0 chr4 6027069 6027139 -178261523 + MIR SINE MIR 180 250 -12 917 216 72 0 chr4 6028338 6028546 -178260116 - MER58A DNA MER1_type -1 223 1 205 191 143 0 chr4 6028851 6028893 -178259769 + L2 LINE L2 3219 3266 -6 203 203 0 109 chr4 6029789 6029853 -178258809 - MIR3 SINE MIR 0 208 152 1140 250 192 5 chr4 6029884 6030342 -178258320 - L2 LINE L2 0 3313 2770 185 254 164 15 chr4 6031525 6031592 -178257070 - L3 LINE CR1 -132 1445 1369 581 311 77 56 chr4 6031599 6031677 -178256985 - L3 LINE CR1 -322 1255 1180 2360 73 0 13 chr4 6031677 6031977 -178256685 - AluSc SINE Alu -13 296 1 581 311 77 56 chr4 6031977 6032274 -178256388 - L3 LINE CR1 -397 1180 872 260 309 147 29 chr4 6032471 6032675 -178255987 - L3 LINE CR1 -1089 488 261 490 326 70 11 chr4 6032920 6033107 -178255555 + MIR SINE MIR 47 244 -18 600 264 106 22 chr4 6034287 6034514 -178254148 - MIR SINE MIR 0 262 17 418 259 280 16 chr4 6035177 6035370 -178253292 - MIR SINE MIR -1 261 18 197 250 21 0 chr4 6035669 6035717 -178252945 + L2 LINE L2 3186 3234 -38 972 104 0 15 chr4 6037206 6037364 -178251298 - FLAM_C SINE Alu 0 156 1 313 300 70 0 chr4 6042064 6042164 -178246498 + MIR3 SINE MIR 78 184 -24 261 284 74 0 chr4 6042318 6042399 -178246263 - MIR SINE MIR -71 191 105 293 191 0 0 chr4 6042796 6042843 -178245819 - MER5B DNA MER1_type -131 47 1 789 227 104 5 chr4 6042861 6043081 -178245581 + MIR SINE MIR 13 254 -8 1232 179 25 68 chr4 6043193 6043472 -178245190 - AluJo SINE Alu -2 310 44 188 259 138 0 chr4 6043939 6043997 -178244665 - MIR3 SINE MIR -52 156 91 703 264 24 81 chr4 6045305 6045551 -178243111 - MIR SINE MIR -29 233 2 345 298 12 0 chr4 6046257 6046341 -178242321 + L2 LINE L2 3229 3313 0 211 353 35 0 chr4 6046653 6046738 -178241924 + L3b LINE CR1 1422 1509 -74 1646 175 42 18 chr4 6048083 6048414 -178240248 - MER2 DNA MER2_type -3 341 3 550 240 56 56 chr4 6048430 6048568 -178240094 - L1ME4a LINE L1 -198 5923 5783 2154 116 0 7 chr4 6048568 6048878 -178239784 + AluSq SINE Alu 1 308 -5 550 240 56 56 chr4 6048878 6048972 -178239690 - L1ME4a LINE L1 -337 5784 5691 420 221 0 12 chr4 6049327 6049413 -178239249 + MIR3 SINE MIR 117 201 -7 180 258 0 65 chr4 6050425 6050487 -178238175 - L2 LINE L2 -60 3212 3155 361 300 61 40 chr4 6050487 6050764 -178237898 + Charlie2 DNA MER1_type 1 283 -2499 2713 224 76 35 chr4 6050792 6051388 -178237274 + Charlie2 DNA MER1_type 1852 2505 -357 563 95 21 0 chr4 6051388 6051483 -178237179 + L1PB2 LINE L1 6053 6149 -2 2713 224 76 35 chr4 6051483 6051857 -178236805 + Charlie2 DNA MER1_type 2505 2862 0 189 333 49 31 chr4 6051951 6052134 -178236528 - L2 LINE L2 -313 2959 2701 381 259 45 18 chr4 6052194 6052306 -178236356 - L2 LINE L2 0 3272 3158 1262 187 68 3 chr4 6052352 6052702 -178235960 + L1MD2 LINE L1 5211 5577 -751 1258 126 40 20 chr4 6052723 6052970 -178235692 - L1MB8 LINE L1 -5 6173 5922 2026 140 35 85 chr4 6052975 6053314 -178235348 - MER47B DNA MER2_type -1910 413 99 1950 124 16 29 chr4 6053314 6053621 -178235041 + AluSx SINE Alu 5 307 -5 2026 140 35 85 chr4 6053621 6053716 -178234946 - MER47B DNA MER2_type -2224 99 1 1249 137 39 13 chr4 6053716 6053950 -178234712 - L1MB8 LINE L1 -261 5923 5684 * 1432 234 63 0 chr4 6053948 6054415 -178234247 + L1MD2 LINE L1 5579 6080 -86 1357 105 79 31 chr4 6054444 6054761 -178233901 - Tigger7 DNA MER2_type -34 2553 1 437 198 143 0 chr4 6054977 6055068 -178233594 + Tigger5 DNA MER2_type 132 235 -2088 405 265 108 24 chr4 6055940 6056106 -178232556 - MIR3 SINE MIR -6 202 23 386 300 27 0 chr4 6056629 6056739 -178231923 + MLT1K LTR MaLR 473 585 -3 291 323 168 0 chr4 6056740 6056901 -178231761 - MIR SINE MIR -49 213 26 406 257 13 99 chr4 6056988 6057140 -178231522 + MIR3 SINE MIR 6 144 -64 363 279 112 39 chr4 6057228 6057407 -178231255 + MER117 DNA MER1_type 6 197 0 360 241 117 19 chr4 6057725 6057859 -178230803 - MIR SINE MIR -65 143 30 385 299 28 0 chr4 6058708 6058815 -178229847 - L3 LINE CR1 -41 1536 1427 323 276 103 35 chr4 6059227 6059343 -178229319 - MIR SINE MIR -68 140 17 327 351 87 34 chr4 6059443 6059708 -178228954 + L2 LINE L2 2872 3150 -122 653 195 113 1 chr4 6059914 6060073 -178228589 + MER69A DNA AcHobo 1 177 0 242 338 42 0 chr4 6060080 6060151 -178228511 - L2 LINE L2 -65 3207 3134 296 174 279 0 chr4 6060157 6060243 -178228419 - L2 LINE L2 0 3272 3163 208 338 0 0 chr4 6060519 6060590 -178228072 - L3 LINE CR1 -111 1466 1396 301 354 76 0 chr4 6061563 6061707 -178226955 + MIR SINE MIR 108 262 0 946 133 23 12 chr4 6061959 6062132 -178226530 - FAM SINE Alu 0 175 1 628 174 174 31 chr4 6062250 6062411 -178226251 + Charlie1b DNA MER1_type 78 261 -262 544 184 72 0 chr4 6062409 6062534 -178226128 + Charlie1b DNA MER1_type 390 523 0 * 2082 41 96 4 chr4 6062608 6062878 -178225784 - AluY SINE Alu -16 295 1 538 165 44 0 chr4 6063629 6063720 -178224942 - FAM SINE Alu -90 95 1 2489 146 2 15 chr4 6063828 6064226 -178224436 + Tigger2a DNA MER2_type 1 393 -41 893 206 158 13 chr4 6064333 6064480 -178224182 + MLT1I LTR MaLR 146 270 -139 3692 58 13 2 chr4 6064480 6064928 -178223734 - MLT2A2 LTR ERVL 0 453 1 893 206 158 13 chr4 6064928 6065008 -178223654 + MLT1I LTR MaLR 270 406 -3 183 129 0 0 chr4 6065398 6065429 -178223233 + (T)n Simple_repeat Simple_repeat 1 31 0 2205 105 0 31 chr4 6065431 6065754 -178222908 - AluSq SINE Alu 0 313 1 2315 120 35 32 chr4 6065904 6066278 -178222384 + THE1C LTR MaLR 1 375 0 1406 239 163 14 chr4 6066400 6066836 -178221826 + MLT1D LTR MaLR 1 501 -4 1850 128 17 13 chr4 6067374 6067672 -178220990 + AluSx SINE Alu 2 300 -12 351 0 0 0 chr4 6068033 6068072 -178220590 + (TG)n Simple_repeat Simple_repeat 1 39 0 463 180 128 10 chr4 6068813 6068934 -178219728 + MIR SINE MIR 28 149 -65 2882 71 3 0 chr4 6069336 6069690 -178218972 + THE1A LTR MaLR 1 355 0 11679 94 17 2 chr4 6069690 6071247 -178217415 + THE1A-int LTR MaLR 1 1580 0 2732 72 20 0 chr4 6071247 6071595 -178217067 + THE1A LTR MaLR 1 355 0 1975 205 35 41 chr4 6071771 6072279 -178216383 - MLT1D LTR MaLR 0 505 1 515 260 127 20 chr4 6073171 6073321 -178215341 - MIR3 SINE MIR -5 203 38 287 246 134 42 chr4 6073500 6073642 -178215020 - L2 LINE L2 -2 3270 3116 330 277 178 50 chr4 6073845 6073988 -178214674 + MIR SINE MIR 7 185 -77 2208 123 33 41 chr4 6073988 6074355 -178214307 - THE1B LTR MaLR 0 364 1 330 277 178 50 chr4 6074355 6074413 -178214249 + MIR SINE MIR 185 234 -28 831 251 58 14 chr4 6074693 6074916 -178213746 + L3b LINE CR1 1192 1424 -159 571 291 79 25 chr4 6076573 6076776 -178211886 - MIR SINE MIR 0 262 49 2105 96 0 20 chr4 6076777 6077078 -178211584 + AluSg SINE Alu 1 295 -15 2026 114 7 0 chr4 6077091 6077400 -178211262 + AluSx SINE Alu 2 312 0 809 161 0 15 chr4 6078359 6078496 -178210166 - FRAM SINE Alu -22 154 20 220 249 129 41 chr4 6078741 6078934 -178209728 + MIR SINE MIR 8 224 -38 234 363 108 0 chr4 6078958 6079060 -178209602 - L2 LINE L2 -1 3312 3200 219 69 0 0 chr4 6079558 6079587 -178209075 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 218 268 138 65 chr4 6079587 6079710 -178208952 - L2 LINE L2 -13 3300 3169 201 39 0 0 chr4 6079741 6079767 -178208895 + (CAAAAA)n Simple_repeat Simple_repeat 2 27 0 251 193 53 0 chr4 6079859 6079916 -178208746 + CT-rich Low_complexity Low_complexity 2 61 0 2531 157 29 5 chr4 6080026 6080441 -178208221 - MER61B LTR ERV1 0 425 1 184 403 17 0 chr4 6080489 6080608 -178208054 - L3 LINE CR1 -72 1505 1385 * 208 351 44 18 chr4 6080602 6080619 -178208043 - L2 LINE L2 -1 3271 3256 1581 146 3 57 chr4 6080619 6080934 -178207728 - AluJo SINE Alu -14 298 1 208 351 44 18 chr4 6080934 6081030 -178207632 - L2 LINE L2 -16 3256 3155 666 304 111 33 chr4 6081114 6081476 -178207186 - L3 LINE CR1 -455 1122 733 204 40 0 0 chr4 6081511 6081536 -178207126 + (TG)n Simple_repeat Simple_repeat 2 26 0 1595 191 11 46 chr4 6081998 6082364 -178206298 - L1PA16 LINE L1 0 6166 5814 2100 63 44 0 chr4 6082603 6082873 -178205789 + AluY SINE Alu 1 282 -29 270 0 0 0 chr4 6082877 6082907 -178205755 + (TAA)n Simple_repeat Simple_repeat 2 31 0 301 282 68 8 chr4 6083227 6083344 -178205318 + MIR SINE MIR 139 262 0 347 288 64 52 chr4 6083401 6083758 -178204904 - MLT1J LTR MaLR -56 455 110 333 258 161 97 chr4 6084037 6084386 -178204276 - MLT1I LTR MaLR -21 388 18 213 227 18 172 chr4 6084404 6084567 -178204095 + L2 LINE L2 3054 3191 -81 2138 147 21 0 chr4 6085031 6085364 -178203298 + L1MC1 LINE L1 5514 5853 -480 391 198 207 18 chr4 6085382 6085493 -178203169 + MIR SINE MIR 73 204 -58 633 281 40 12 chr4 6085495 6085858 -178202804 + LTR33 LTR ERVL 1 406 -115 234 0 0 0 chr4 6085920 6085946 -178202716 + (A)n Simple_repeat Simple_repeat 1 26 0 2962 128 27 2 chr4 6085947 6086431 -178202231 + L1MC2 LINE L1 5839 6334 -10 344 331 31 8 chr4 6086503 6086633 -178202029 - L2 LINE L2 -220 3052 2920 * 353 292 62 0 chr4 6086626 6086722 -178201940 + L2 LINE L2 3212 3313 0 2144 105 3 0 chr4 6086801 6087097 -178201565 - AluSp SINE Alu -16 297 1 562 275 40 29 chr4 6087730 6087967 -178200695 - MIR SINE MIR -15 247 2 256 297 18 54 chr4 6088219 6088330 -178200332 + MER67B LTR ERV1 55 161 -500 225 0 0 0 chr4 6088608 6088633 -178200029 + (TG)n Simple_repeat Simple_repeat 2 26 0 415 236 0 0 chr4 6088654 6088755 -178199907 + MIR SINE MIR 52 153 -55 778 294 124 13 chr4 6088846 6088956 -178199706 - L2 LINE L2 -39 3274 3178 2345 107 48 25 chr4 6088956 6089312 -178199350 - THE1B LTR MaLR 0 364 1 778 294 124 13 chr4 6089312 6089672 -178198990 - L2 LINE L2 -135 3178 2738 357 118 0 0 chr4 6089865 6089916 -178198746 + MSTA LTR MaLR 2 52 -376 2149 253 90 13 chr4 6090010 6091210 -178197452 - L1MC4 LINE L1 -139 7903 6459 1767 128 134 15 chr4 6091493 6091828 -178196834 + THE1C LTR MaLR 1 375 0 228 200 18 0 chr4 6092149 6092204 -178196458 + L2 LINE L2 2918 2973 -299 530 248 32 16 chr4 6092392 6092517 -178196145 - L2 LINE L2 -1 3271 3145 204 273 0 0 chr4 6092670 6092714 -178195948 - L2 LINE L2 -93 3179 3136 446 301 133 18 chr4 6092833 6093172 -178195490 + LTR16A1 LTR ERVL 33 410 -47 2847 78 16 3 chr4 6093300 6093670 -178194992 + THE1C LTR MaLR 1 375 0 347 0 23 0 chr4 6093921 6093964 -178194698 + (CA)n Simple_repeat Simple_repeat 2 45 0 270 0 0 0 chr4 6094026 6094056 -178194606 + (CA)n Simple_repeat Simple_repeat 2 31 0 211 240 73 62 chr4 6094812 6094908 -178193754 - MIR SINE MIR -33 229 133 508 162 20 10 chr4 6095516 6095615 -178193047 - MER96B DNA MER1_type? -286 131 32 289 231 37 65 chr4 6095665 6095773 -178192889 - MIR SINE MIR -78 184 80 1446 187 38 29 chr4 6096571 6096887 -178191775 - MLT1A2 LTR MaLR 0 374 56 4483 188 12 21 chr4 6097007 6097894 -178190768 - L1MB5 LINE L1 -36 6138 5260 1657 179 0 28 chr4 6097960 6098279 -178190383 + AluJb SINE Alu 1 310 -2 329 115 33 0 chr4 6098279 6098333 -178190329 + GA-rich Low_complexity Low_complexity 6 64 0 698 266 0 12 chr4 6098382 6098551 -178190111 + MIR SINE MIR 96 262 0 376 195 114 57 chr4 6098634 6098833 -178189829 - MIR SINE MIR -3 259 44 545 289 27 11 chr4 6098840 6099027 -178189635 + LTR16A LTR ERVL 157 346 -104 350 265 12 0 chr4 6099076 6099159 -178189503 + MER81 DNA DNA 30 113 -1 25 51 0 0 chr4 6099988 6100027 -178188635 + AT_rich Low_complexity Low_complexity 1 39 0 1601 208 140 20 chr4 6100048 6100447 -178188215 - MLT2B1 LTR ERVL -71 449 3 1259 202 175 19 chr4 6100663 6101034 -178187628 + MLT1C LTR MaLR 6 434 -33 1954 109 26 32 chr4 6101034 6101345 -178187317 - THE1B LTR MaLR 0 364 56 4781 128 55 3 chr4 6101929 6102669 -178185993 + MER4E LTR ERV1 1 779 0 1650 163 7 0 chr4 6102919 6103189 -178185473 - AluJo SINE Alu -8 304 33 1460 253 48 27 chr4 6103859 6104146 -178184516 - MLT1C LTR MaLR 0 467 166 2034 118 0 6 chr4 6104146 6104459 -178184203 - AluSx SINE Alu -1 311 1 1460 253 48 27 chr4 6104459 6104613 -178184049 - MLT1C LTR MaLR -301 166 17 214 269 30 0 chr4 6104661 6104728 -178183934 + MIR SINE MIR 187 255 -7 326 232 0 14 chr4 6105202 6105271 -178183391 - L2 LINE L2 -4 3309 3242 617 282 70 37 chr4 6105315 6105556 -178183106 - MIR SINE MIR -10 252 4 215 261 94 58 chr4 6105614 6105752 -178182910 - L2 LINE L2 -174 3098 2956 1196 118 0 0 chr4 6106120 6106298 -178182364 + L1PA14 LINE L1 5984 6161 0 513 0 0 0 chr4 6106429 6106486 -178182176 + (TAA)n Simple_repeat Simple_repeat 3 59 0 1749 137 96 0 chr4 6106493 6106763 -178181899 + AluJo SINE Alu 3 298 -14 690 297 67 5 chr4 6106773 6106968 -178181694 - MIR SINE MIR -6 256 50 1448 215 93 9 chr4 6107068 6107412 -178181250 + MLT1A2 LTR MaLR 2 374 0 673 276 98 19 chr4 6107642 6107856 -178180806 + MIR SINE MIR 29 259 -3 183 80 0 0 chr4 6108629 6108654 -178180008 + (T)n Simple_repeat Simple_repeat 1 25 0 219 293 190 17 chr4 6109049 6109223 -178179439 + L2 LINE L2 3019 3222 -50 405 268 150 0 chr4 6109563 6109690 -178178972 + MIR SINE MIR 117 262 0 216 290 32 0 chr4 6110160 6110222 -178178440 - MIR SINE MIR -64 144 81 2295 110 13 0 chr4 6110293 6110594 -178178068 + AluSx SINE Alu 1 305 -7 647 277 66 31 chr4 6110718 6111036 -178177626 + L1MC4a LINE L1 5558 5886 -1922 210 369 29 0 chr4 6111275 6111378 -178177284 + MIR SINE MIR 66 171 -91 327 260 0 0 chr4 6111599 6111676 -178176986 - L2 LINE L2 -215 3057 2981 577 254 29 35 chr4 6111919 6111950 -178176712 - MIR SINE MIR -60 202 172 2297 105 0 7 chr4 6111950 6112276 -178176386 - AluSx SINE Alu 0 312 1 577 254 29 35 chr4 6112276 6112417 -178176245 - MIR SINE MIR -90 172 31 327 294 73 0 chr4 6112613 6112722 -178175940 - MIR SINE MIR -89 173 57 233 279 135 29 chr4 6112752 6112856 -178175806 - MIR SINE MIR -81 181 67 348 269 83 28 chr4 6113205 6113350 -178175312 - MIR SINE MIR -52 210 58 2351 98 3 0 chr4 6113650 6113955 -178174707 + AluY SINE Alu 1 306 -5 2456 76 3 13 chr4 6114028 6114343 -178174319 + AluSq SINE Alu 1 312 -1 1183 141 0 17 chr4 6114343 6114510 -178174152 + AluSg/x SINE Alu 133 298 -12 303 312 29 0 chr4 6115587 6115710 -178172952 - MIR SINE MIR -69 139 12 381 299 86 41 chr4 6115731 6115928 -178172734 + MIR SINE MIR 13 218 -44 1137 258 79 25 chr4 6115932 6116309 -178172353 - MLT1L LTR MaLR -4 611 205 2086 232 102 16 chr4 6116309 6116856 -178171806 - MLT1G1 LTR MaLR 0 595 2 1137 258 79 25 chr4 6116856 6116923 -178171739 - MLT1L LTR MaLR -410 205 143 2365 115 0 0 chr4 6117139 6117451 -178171211 - AluSx SINE Alu 0 312 1 297 167 0 0 chr4 6117817 6117871 -178170791 + (TG)n Simple_repeat Simple_repeat 1 54 0 389 312 12 58 chr4 6118115 6118288 -178170374 - MIR3 SINE MIR -4 204 40 * 593 261 43 68 chr4 6118287 6118521 -178170141 + MIR SINE MIR 6 233 -29 1974 138 0 10 chr4 6118529 6118833 -178169829 - MLT1A1 LTR MaLR 0 365 65 2064 101 0 8 chr4 6118836 6119103 -178169559 - AluSq SINE Alu -48 265 1 274 265 116 79 chr4 6119401 6119590 -178169072 - MLT1J LTR MaLR -6 505 310 850 249 121 55 chr4 6119706 6120225 -178168437 + MLT1G1 LTR MaLR 34 554 -1 227 227 0 30 chr4 6120227 6120293 -178168369 - MLT1J2 LTR MaLR -320 130 67 314 200 91 0 chr4 6120484 6120594 -178168068 - Charlie7 DNA MER1_type -40 2572 2453 822 231 7 0 chr4 6120595 6120742 -178167920 + FAM SINE Alu 2 149 -36 2197 138 52 6 chr4 6120744 6121092 -178167570 + THE1B LTR MaLR 1 364 0 180 191 0 0 chr4 6121121 6121137 -178167525 + (TAA)n Simple_repeat Simple_repeat 1 16 -26 1843 159 7 3 chr4 6121137 6121432 -178167230 + AluJb SINE Alu 1 296 -16 180 191 0 0 chr4 6121432 6121457 -178167205 + (TAA)n Simple_repeat Simple_repeat 15 42 0 192 77 0 0 chr4 6121712 6121738 -178166924 + (TC)n Simple_repeat Simple_repeat 2 27 0 620 266 107 64 chr4 6121755 6122073 -178166589 - Charlie7 DNA MER1_type -2058 554 202 2027 118 81 35 chr4 6122073 6122421 -178166241 - THE1B LTR MaLR 0 364 1 620 266 107 64 chr4 6122421 6122633 -178166029 - Charlie7 DNA MER1_type -2410 202 1 295 330 76 0 chr4 6122634 6122752 -178165910 + L2 LINE L2 3146 3272 0 1805 154 129 7 chr4 6123128 6123528 -178165134 - MLT1D LTR MaLR 0 467 26 1602 150 40 44 chr4 6123640 6123780 -178164882 - AluJo SINE Alu -39 273 133 2365 104 0 0 chr4 6123780 6124078 -178164584 - AluSx SINE Alu -14 298 1 1602 150 40 44 chr4 6124078 6124211 -178164451 - AluJo SINE Alu -179 133 1 299 250 0 0 chr4 6124222 6124294 -178164368 - MER81 DNA DNA -42 72 1 561 286 85 5 chr4 6124299 6124488 -178164174 + MIR SINE MIR 2 205 -57 263 241 51 25 chr4 6125490 6125569 -178163093 - L2 LINE L2 -46 3226 3146 314 224 90 75 chr4 6125785 6125919 -178162743 + L2 LINE L2 2951 3086 -186 4081 197 21 52 chr4 6125967 6126483 -178162179 - L1MB7 LINE L1 0 6184 5653 2719 139 27 2 chr4 6126483 6126894 -178161768 + MSTB LTR MaLR 5 425 -1 4081 197 21 52 chr4 6126894 6127251 -178161411 - L1MB7 LINE L1 -531 5653 5286 2210 108 3 0 chr4 6127251 6127546 -178161116 - AluSp SINE Alu -17 296 1 4081 197 21 52 chr4 6127546 6127979 -178160683 - L1MB7 LINE L1 -898 5286 4841 4364 65 0 7 chr4 6127979 6128533 -178160129 + L1PA13 LINE L1 5612 6161 -2 4081 197 21 52 chr4 6128533 6128716 -178159946 - L1MB7 LINE L1 -1343 4841 4654 1221 158 83 0 chr4 6128716 6128957 -178159705 - L1MB3 LINE L1 0 6183 5923 4081 197 21 52 chr4 6128957 6129344 -178159318 - L1MB7 LINE L1 -1530 4654 4364 649 203 209 89 chr4 6129410 6129725 -178158937 + MLT1J1 LTR MaLR 74 427 -23 1943 174 34 29 chr4 6130100 6130647 -178158015 + MLT2A2 LTR ERVL 4 554 0 289 243 27 14 chr4 6130647 6130721 -178157941 - MIR SINE MIR -55 153 88 243 304 89 60 chr4 6130815 6130983 -178157679 + L2 LINE L2 2916 3088 -184 440 315 14 21 chr4 6131077 6131220 -178157442 + MIR SINE MIR 118 259 -3 182 258 54 65 chr4 6131241 6131334 -178157328 + L2 LINE L2 3222 3313 0 1982 153 3 7 chr4 6131348 6131648 -178157014 + AluJb SINE Alu 3 301 -11 2445 75 0 3 chr4 6131942 6132248 -178156414 + AluY SINE Alu 1 305 -6 2186 123 0 37 chr4 6132644 6132680 -178155982 - AluSq SINE Alu 0 313 277 180 0 0 0 chr4 6132680 6132700 -178155962 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2186 123 0 37 chr4 6132700 6132988 -178155674 - AluSq SINE Alu -36 277 1 2411 36 11 0 chr4 6133376 6133652 -178155010 - AluY SINE Alu -2 309 31 1170 291 71 14 chr4 6133751 6134187 -178154475 - L2 LINE L2 0 3313 2853 272 325 73 14 chr4 6134313 6134455 -178154207 + MIR SINE MIR 1 147 -62 2468 99 0 0 chr4 6134485 6134797 -178153865 + AluSx SINE Alu 1 312 0 271 271 26 56 chr4 6135029 6135180 -178153482 - MIR SINE MIR -67 141 8 219 203 0 68 chr4 6135258 6135317 -178153345 + L2 LINE L2 3136 3190 -82 713 242 152 51 chr4 6135448 6135857 -178152805 - MLT1J2 LTR MaLR 0 450 1 1436 111 20 0 chr4 6136296 6136495 -178152167 + AluSq SINE Alu 1 203 -110 4142 139 45 33 chr4 6136536 6136839 -178151823 + L1MB3 LINE L1 5317 5615 -568 2132 146 36 33 chr4 6136839 6137202 -178151460 - THE1B LTR MaLR 0 364 1 4142 139 45 33 chr4 6137202 6137713 -178150949 + L1MB3 LINE L1 5615 6141 -42 836 124 25 8 chr4 6137724 6137845 -178150817 + AluJb SINE Alu 12 134 -178 2504 72 0 0 chr4 6137846 6138151 -178150511 + AluY SINE Alu 1 305 -6 21 0 0 0 chr4 6138356 6138377 -178150285 + AT_rich Low_complexity Low_complexity 1 21 0 2232 109 3 0 chr4 6138476 6138770 -178149892 + AluSp SINE Alu 1 295 -18 1336 167 31 108 chr4 6138891 6139025 -178149637 + MLT1A1 LTR MaLR 2 145 -220 2332 140 89 0 chr4 6139025 6139418 -178149244 - MSTA LTR MaLR 0 428 1 1336 167 31 108 chr4 6139418 6139673 -178148989 + MLT1A1 LTR MaLR 145 361 -4 223 294 168 25 chr4 6139843 6139962 -178148700 + MIR SINE MIR 29 164 -98 208 216 0 0 chr4 6139959 6139996 -178148666 + MIR SINE MIR 110 146 -62 * 378 200 56 11 chr4 6140003 6140093 -178148569 + MIR SINE MIR 99 192 -70 194 269 54 11 chr4 6140635 6140728 -178147934 - MIR3 SINE MIR -19 189 93 912 195 71 95 chr4 6140880 6141218 -178147444 + MLT1J LTR MaLR 45 374 -137 310 310 163 8 chr4 6141243 6141372 -178147290 - MIR SINE MIR -95 167 19 540 263 176 66 chr4 6141666 6141768 -178146894 + MLT1G1 LTR MaLR 3 92 -503 2193 125 3 0 chr4 6141768 6142065 -178146597 + AluSq SINE Alu 1 298 -15 540 263 176 66 chr4 6142065 6142495 -178146167 + MLT1G1 LTR MaLR 92 594 -1 612 139 9 26 chr4 6143329 6143444 -178145218 - L1MB7 LINE L1 -43 6141 6029 2148 135 3 13 chr4 6143454 6143629 -178145033 - AluSx SINE Alu -4 308 136 2055 133 7 7 chr4 6143629 6143929 -178144733 - AluSg1 SINE Alu -9 300 1 2148 135 3 13 chr4 6143929 6144064 -178144598 - AluSx SINE Alu -176 136 1 562 289 29 69 chr4 6144100 6144153 -178144509 - L1MC4a LINE L1 -1925 5883 5829 1898 171 0 13 chr4 6144153 6144462 -178144200 - AluJb SINE Alu -2 310 6 562 289 29 69 chr4 6144462 6144754 -178143908 - L1MC4a LINE L1 -1979 5829 5552 1096 216 103 23 chr4 6144973 6145350 -178143312 + MLT1J LTR MaLR 20 482 -29 288 250 99 24 chr4 6145445 6145680 -178142982 - L2 LINE L2 -22 3250 2935 701 96 36 2 chr4 6146158 6146409 -178142253 + AluSp SINE Alu 2 305 -8 361 322 70 74 chr4 6146687 6147146 -178141516 - L2 LINE L2 0 3272 2816 1477 231 58 14 chr4 6147352 6147780 -178140882 + MER39 LTR ERV1 261 707 0 1519 208 62 18 chr4 6147843 6148280 -178140382 - MLT1C LTR MaLR -4 463 8 290 179 218 0 chr4 6150612 6150690 -178137972 - MER5A DNA MER1_type -80 109 15 816 220 39 28 chr4 6150695 6150877 -178137785 - MER5A DNA MER1_type -5 184 1 322 312 24 16 chr4 6151028 6151153 -178137509 + L2 LINE L2 2944 3069 -203 498 216 89 10 chr4 6151314 6151452 -178137210 + MIR SINE MIR 54 206 -56 190 300 100 10 chr4 6151637 6151737 -178136925 - MIR SINE MIR -4 258 150 772 282 53 11 chr4 6152284 6152550 -178136112 + L2 LINE L2 3037 3313 0 4206 117 16 30 chr4 6152567 6152663 -178135999 + MER41B LTR ERV1 2 98 -537 2529 73 0 0 chr4 6152663 6152965 -178135697 - AluY SINE Alu -7 304 3 4206 117 16 30 chr4 6152965 6153511 -178135151 + MER41B LTR ERV1 98 635 0 350 297 21 41 chr4 6153679 6153824 -178134838 + MIR3 SINE MIR 3 144 -64 846 141 0 0 chr4 6153833 6153954 -178134708 + AluJb SINE Alu 3 123 -189 226 318 0 15 chr4 6155176 6155242 -178133420 - L2 LINE L2 -1 3271 3207 608 206 34 41 chr4 6155417 6155563 -178133099 + L2 LINE L2 3166 3310 -3 2226 64 0 7 chr4 6156595 6156891 -178131771 - AluSp SINE Alu -19 294 1 349 287 94 25 chr4 6156891 6157093 -178131569 - L1ME4a LINE L1 -294 5827 5612 481 51 51 25 chr4 6157101 6157121 -178131541 - Alu SINE Alu 0 310 292 2060 169 37 5 chr4 6157121 6157524 -178131138 - L1MB3 LINE L1 0 6183 5768 481 51 51 25 chr4 6157524 6157582 -178131080 - Alu SINE Alu -18 292 230 614 228 40 8 chr4 6157583 6157787 -178130875 - L1MB3 LINE L1 -381 5787 5503 356 261 8 0 chr4 6157918 6158037 -178130625 + (CCCA)n Simple_repeat Simple_repeat 3 122 0 955 137 11 0 chr4 6158090 6158265 -178130397 + (TCCA)n Simple_repeat Simple_repeat 3 179 0 198 0 0 0 chr4 6160320 6160342 -178128320 + (A)n Simple_repeat Simple_repeat 1 22 0 1429 188 41 0 chr4 6161805 6162076 -178126586 + AluJo SINE Alu 1 282 -30 333 0 0 0 chr4 6162079 6162116 -178126546 + (CA)n Simple_repeat Simple_repeat 2 38 0 331 246 123 43 chr4 6162285 6162423 -178126239 - L2 LINE L2 -4 3309 3161 1316 94 0 85 chr4 6162476 6162700 -178125962 - AluSg/x SINE Alu -3 309 105 566 217 7 43 chr4 6162716 6162854 -178125808 - AluSq/x SINE Alu -179 133 1 21 36 0 0 chr4 6163013 6163041 -178125621 + AT_rich Low_complexity Low_complexity 1 28 0 940 88 7 36 chr4 6163072 6163209 -178125453 - AluSq/x SINE Alu -179 133 1 1159 254 43 40 chr4 6163215 6163585 -178125077 + MLT1I LTR MaLR 39 409 0 185 340 64 21 chr4 6163810 6163904 -178124758 + MIR SINE MIR 163 260 -2 660 270 56 9 chr4 6163908 6164104 -178124558 - MIR SINE MIR -30 232 34 294 219 20 137 chr4 6164247 6164393 -178124269 - MLT1H LTR MaLR 0 549 421 232 278 14 14 chr4 6164574 6164646 -178124016 - MIR SINE MIR -157 105 34 208 247 47 0 chr4 6164730 6164815 -178123847 + (TA)n Simple_repeat Simple_repeat 2 90 0 746 188 0 8 chr4 6165137 6165310 -178123352 - FLAM_C SINE Alu 0 172 1 281 293 53 0 chr4 6165380 6165455 -178123207 + MIR SINE MIR 119 197 -65 267 256 131 22 chr4 6165463 6165478 -178123184 + MIR3 SINE MIR 23 35 -173 2256 171 5 3 chr4 6165478 6165865 -178122797 - MLT1B LTR MaLR -2 388 1 267 256 131 22 chr4 6165865 6165986 -178122676 + MIR3 SINE MIR 35 174 -34 773 162 0 22 chr4 6166410 6166546 -178122116 - FLAM_A SINE Alu 0 133 1 248 306 58 40 chr4 6166775 6166948 -178121714 - L1MC/D LINE L1 -1910 5898 5723 204 179 74 28 chr4 6166949 6167038 -178121624 + MIR SINE MIR 93 253 -9 440 204 78 0 chr4 6167343 6167446 -178121216 - L2 LINE L2 0 3272 3162 2258 98 0 3 chr4 6167491 6167796 -178120866 + AluSx SINE Alu 1 304 -8 2069 131 0 0 chr4 6168209 6168500 -178120162 - AluSx SINE Alu -21 291 1 310 283 131 0 chr4 6168958 6169057 -178119605 + L2 LINE L2 3161 3272 0 804 207 62 43 chr4 6169552 6169760 -178118902 - MIR SINE MIR 0 262 51 1496 179 7 18 chr4 6169760 6170040 -178118622 - MLT1B LTR MaLR 0 390 114 255 311 29 19 chr4 6170060 6170163 -178118499 + MIR SINE MIR 117 220 -42 257 274 105 88 chr4 6170349 6170645 -178118017 + L2 LINE L2 2972 3272 0 339 303 103 12 chr4 6170744 6170909 -178117753 - L1ME4a LINE L1 -3 6118 5939 354 285 43 65 chr4 6170936 6171122 -178117540 - L1ME4a LINE L1 -157 5964 5783 278 371 101 3 chr4 6171759 6172047 -178116615 + L2 LINE L2 2915 3230 -42 1750 162 3 19 chr4 6172280 6172594 -178116068 + AluJo SINE Alu 1 309 -3 1852 233 90 32 chr4 6172821 6173378 -178115284 + MLT1E LTR MaLR 5 593 0 2177 101 0 3 chr4 6173547 6173844 -178114818 + AluSc SINE Alu 1 296 -13 253 257 14 14 chr4 6174125 6174199 -178114463 + LTR33A LTR ERVL 448 521 -2 285 253 66 22 chr4 6174201 6174292 -178114370 - L2 LINE L2 -41 3231 3137 467 193 34 39 chr4 6174341 6174468 -178114194 + MER69 DNA AcHobo 1 2467 -59 2195 96 6 13 chr4 6174490 6174802 -178113860 - AluSx SINE Alu -2 310 1 250 171 0 0 chr4 6174829 6174870 -178113792 + MER69 DNA AcHobo 2478 2518 -8 1759 188 115 65 chr4 6175331 6175825 -178112837 - MLT2B1 LTR ERVL 0 520 2 1729 114 16 75 chr4 6175825 6176131 -178112531 + AluSx SINE Alu 1 288 -24 2026 137 3 0 chr4 6176219 6176519 -178112143 + AluSp SINE Alu 1 301 -12 1098 275 45 27 chr4 6176654 6177028 -178111634 - LTR16C LTR ERVL 0 491 111 250 377 72 7 chr4 6177298 6177436 -178111226 + MIR SINE MIR 47 193 -69 415 261 22 22 chr4 6178162 6178254 -178110408 - MIR SINE MIR -86 122 31 307 325 87 8 chr4 6178538 6178664 -178109998 + MIR3 SINE MIR 60 195 -13 1104 149 0 2 chr4 6178664 6179006 -178109656 + (TCCA)n Simple_repeat Simple_repeat 1 521 0 226 320 60 33 chr4 6179221 6179371 -178109291 - MIR SINE MIR -25 237 84 625 216 227 0 chr4 6179409 6179585 -178109077 + MIR SINE MIR 45 260 -2 242 299 35 0 chr4 6180362 6180449 -178108213 + MIR SINE MIR 49 138 -124 1100 63 8 8 chr4 6180780 6181020 -178107642 + (TCTA)n Simple_repeat Simple_repeat 1 240 0 1207 197 42 11 chr4 6181037 6181301 -178107361 - AluJo SINE Alu -40 272 1 312 339 27 49 chr4 6182234 6182417 -178106245 - MIR3 SINE MIR -21 187 9 239 272 59 81 chr4 6182688 6182824 -178105838 + MIR SINE MIR 72 204 -58 515 264 83 7 chr4 6182942 6183086 -178105576 - L2 LINE L2 0 3313 3159 720 284 175 9 chr4 6183107 6183438 -178105224 - L2 LINE L2 -385 2929 2544 2330 136 25 0 chr4 6183794 6184154 -178104508 - L1PB1 LINE L1 0 6151 5783 1759 77 0 4 chr4 6184256 6184489 -178104173 - L1PB1 LINE L1 -375 5776 5545 2120 86 48 7 chr4 6184501 6184792 -178103870 - AluY SINE Alu -7 304 2 843 273 71 47 chr4 6184848 6185229 -178103433 - L1MEd LINE L1 -5719 400 11 513 270 43 37 chr4 6185281 6185444 -178103218 + MER5A DNA MER1_type 26 189 0 407 173 2 2 chr4 6185585 6185665 -178102997 - MER58 DNA MER1_type 0 2420 262 1925 137 3 0 chr4 6185739 6186024 -178102638 + AluSx SINE Alu 1 286 -26 534 129 0 0 chr4 6186024 6186109 -178102553 + (GGGA)n Simple_repeat Simple_repeat 2 86 0 2473 114 31 14 chr4 6186584 6186942 -178101720 + THE1B LTR MaLR 1 364 0 215 349 24 12 chr4 6187691 6187774 -178100888 - MIR SINE MIR -109 99 16 852 138 20 40 chr4 6187776 6187928 -178100734 + MLT1C LTR MaLR 15 163 -304 800 189 0 0 chr4 6187928 6188060 -178100602 - FRAM SINE Alu -8 168 37 1240 207 50 40 chr4 6188060 6188090 -178100572 + MLT1C LTR MaLR 157 185 -282 632 206 16 40 chr4 6188090 6188216 -178100446 + FLAM_A SINE Alu 1 123 -10 1240 207 50 40 chr4 6188216 6188484 -178100178 + MLT1C LTR MaLR 185 458 -9 964 244 129 58 chr4 6188603 6189038 -178099624 + MLT1J LTR MaLR 5 470 -41 360 173 0 0 chr4 6189170 6189245 -178099417 - L1MA10 LINE L1 -2 6332 6258 367 250 78 9 chr4 6189253 6189369 -178099293 - LTR40a LTR ERVL -353 166 43 783 288 105 27 chr4 6189527 6189937 -178098725 - LTR33 LTR ERVL -68 453 12 700 148 62 0 chr4 6190461 6190589 -178098073 + L1PA16 LINE L1 6028 6163 -3 256 340 10 20 chr4 6190942 6191042 -178097620 - MER5A DNA MER1_type -35 154 56 706 202 136 84 chr4 6191869 6192319 -178096343 - HAL1 LINE L1 -1187 1320 848 183 410 26 26 chr4 6192344 6192500 -178096162 + L2 LINE L2 2606 2761 -553 306 330 39 0 chr4 6192724 6192827 -178095835 - MIR SINE MIR -109 153 47 287 296 204 0 chr4 6193635 6193743 -178094919 + MIR3 SINE MIR 68 197 -11 846 274 36 4 chr4 6194256 6194508 -178094154 + MIR SINE MIR 3 262 0 231 248 78 23 chr4 6194954 6195083 -178093579 + L1M4 LINE L1 2915 3050 -3096 562 324 47 28 chr4 6195092 6195305 -178093357 + LTR16A LTR ERVL 1 217 -233 1272 221 50 16 chr4 6195604 6195926 -178092736 - MER74B LTR ERVL -79 543 211 237 204 0 0 chr4 6195963 6196012 -178092650 - MER74B LTR ERVL -573 49 1 539 201 22 22 chr4 6196039 6196173 -178092489 + LTR16A LTR ERVL 252 385 -65 2085 164 22 8 chr4 6196229 6196589 -178092073 - MLT1A1 LTR MaLR 0 365 1 345 285 30 6 chr4 6196602 6196767 -178091895 + L1M4 LINE L1 3094 3262 -2884 548 217 0 9 chr4 6196776 6196891 -178091771 + FLAM_C SINE Alu 24 137 -6 24 0 0 0 chr4 6197273 6197297 -178091365 + AT_rich Low_complexity Low_complexity 1 24 0 1707 171 24 0 chr4 6197316 6197603 -178091059 - AluSx SINE Alu -18 294 1 301 305 96 48 chr4 6197617 6197804 -178090858 - MIR SINE MIR -18 244 49 1109 220 33 11 chr4 6198045 6198318 -178090344 - MLT1C LTR MaLR -1 466 188 389 321 36 22 chr4 6198538 6198675 -178089987 + MIR SINE MIR 6 144 -118 259 222 48 16 chr4 6198898 6198961 -178089701 - MLT1K LTR MaLR -15 573 509 1485 206 71 52 chr4 6199072 6199447 -178089215 + Charlie4a DNA MER1_type 23 410 -1551 2060 113 0 3 chr4 6199447 6199738 -178088924 - AluSx SINE Alu -22 290 1 1485 206 71 52 chr4 6199738 6199839 -178088823 + Charlie4a DNA MER1_type 410 508 0 313 261 67 25 chr4 6200015 6200134 -178088528 + LTR16C LTR ERVL 261 384 -107 192 345 93 22 chr4 6200358 6200497 -178088165 - L2 LINE L2 -26 3287 3139 214 307 34 11 chr4 6200687 6200775 -178087887 + L2 LINE L2 2966 3055 -217 748 286 110 14 chr4 6201315 6201679 -178086983 + LTR16C LTR ERVL 93 491 0 244 303 40 0 chr4 6201969 6202045 -178086617 + MIR3 SINE MIR 89 167 -41 259 267 35 47 chr4 6202090 6202176 -178086486 + MIR SINE MIR 99 183 -79 743 238 99 46 chr4 6202349 6202483 -178086179 + MLT1C LTR MaLR 7 132 -258 2263 173 52 2 chr4 6202483 6202888 -178085774 - MSTB LTR MaLR 0 426 2 743 238 99 46 chr4 6202888 6203121 -178085541 + MLT1C LTR MaLR 132 375 -15 862 222 0 0 chr4 6203259 6203421 -178085241 - MER45A DNA AcHobo 0 178 17 199 231 0 19 chr4 6203637 6203689 -178084973 - MIR SINE MIR -138 70 20 408 271 33 8 chr4 6203765 6203887 -178084775 + MIR SINE MIR 102 226 -36 207 0 0 0 chr4 6204639 6204662 -178084000 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1739 232 18 8 chr4 6204665 6205057 -178083605 - L1MC2 LINE L1 -9 6335 5940 231 200 0 0 chr4 6205466 6205506 -178083156 + CT-rich Low_complexity Low_complexity 2 41 0 327 265 39 88 chr4 6205876 6206080 -178082582 + L2 LINE L2 2332 2525 -789 2123 177 9 0 chr4 6206354 6206687 -178081975 - MER1B DNA MER1_type 0 337 2 299 310 9 78 chr4 6207390 6207506 -178081156 - MIR SINE MIR -109 153 46 290 286 229 0 chr4 6207629 6207734 -178080928 - MIR3 SINE MIR -13 195 67 298 268 159 36 chr4 6208220 6208358 -178080304 + MIR SINE MIR 65 219 -43 1775 213 2 45 chr4 6208707 6208738 -178079924 - MLT2D LTR ERVL -10 404 373 282 56 0 0 chr4 6208738 6208774 -178079888 + (TG)n Simple_repeat Simple_repeat 1 36 0 1775 213 2 45 chr4 6208774 6209164 -178079498 - MLT2D LTR ERVL -41 373 1 301 240 54 70 chr4 6209999 6210065 -178078597 - MIR SINE MIR -11 251 186 2540 151 44 2 chr4 6210065 6210476 -178078186 + MSTA LTR MaLR 1 428 0 301 240 54 70 chr4 6210476 6210538 -178078124 - MIR SINE MIR -76 186 125 417 52 17 0 chr4 6210538 6210596 -178078066 + MSTA LTR MaLR 370 428 0 357 234 75 0 chr4 6210604 6210698 -178077964 - MIR SINE MIR -77 185 85 22 35 0 0 chr4 6211224 6211253 -178077409 + AT_rich Low_complexity Low_complexity 1 29 0 315 291 91 0 chr4 6211335 6211445 -178077217 + MIR SINE MIR 75 194 -68 481 255 41 107 chr4 6211796 6211992 -178076670 + MIR SINE MIR 16 198 -64 276 331 74 7 chr4 6212936 6213084 -178075578 + L2 LINE L2 2349 2506 -808 275 342 179 0 chr4 6213110 6213227 -178075435 - L2 LINE L2 -6 3266 3129 25 31 0 0 chr4 6214105 6214137 -178074525 + AT_rich Low_complexity Low_complexity 1 32 0 3292 109 82 25 chr4 6214201 6214772 -178073890 - MER4B LTR ERV1 -6 604 1 1408 239 55 97 chr4 6214795 6215163 -178073499 - L1ME2 LINE L1 -91 6073 5744 2701 112 43 24 chr4 6215163 6215583 -178073079 + MSTA LTR MaLR 1 428 0 1408 239 55 97 chr4 6215583 6215872 -178072790 - L1ME2 LINE L1 -420 5744 5444 231 322 35 56 chr4 6215956 6216099 -178072563 + MLT1K LTR MaLR 134 273 -315 552 314 114 43 chr4 6216376 6216726 -178071936 + L2 LINE L2 2897 3271 -1 746 269 123 8 chr4 6216830 6217223 -178071439 - LTR16C LTR ERVL -2 489 6 253 369 23 37 chr4 6217274 6217491 -178071171 + MIR SINE MIR 30 243 -19 231 290 93 9 chr4 6218900 6219007 -178069655 - MIR SINE MIR -112 150 35 293 317 48 0 chr4 6219727 6219831 -178068831 - MIR SINE MIR -104 158 50 264 300 200 4 chr4 6219903 6220143 -178068519 - L2 LINE L2 -160 3112 2826 3006 231 67 14 chr4 6220189 6221028 -178067634 + MER45B DNA AcHobo 110 992 -48 190 174 22 22 chr4 6221098 6221144 -178067518 + MIR SINE MIR 97 142 -66 401 316 53 21 chr4 6221159 6221346 -178067316 + MIR SINE MIR 1 193 -69 274 297 109 50 chr4 6221349 6221450 -178067212 + MIR SINE MIR 75 181 -81 22 0 0 0 chr4 6221504 6221526 -178067136 + AT_rich Low_complexity Low_complexity 1 22 0 1468 189 7 34 chr4 6221526 6221822 -178066840 - AluJb SINE Alu -24 288 1 482 165 0 0 chr4 6222037 6222116 -178066546 + MLT1A2 LTR MaLR 284 362 -12 2975 221 83 16 chr4 6222134 6223096 -178065566 + L1ME1 LINE L1 4834 5887 -279 2814 110 33 35 chr4 6223096 6223525 -178065137 + MSTC LTR MaLR 1 428 0 2975 221 83 16 chr4 6223525 6223822 -178064840 + L1ME1 LINE L1 5887 6163 -3 186 233 23 0 chr4 6223879 6223922 -178064740 - MIR SINE MIR -67 141 98 284 278 52 21 chr4 6223981 6224078 -178064584 - L2 LINE L2 -13 3300 3201 323 240 166 69 chr4 6224194 6224544 -178064118 + LTR33A LTR ERVL 3 386 -137 327 246 97 18 chr4 6225710 6225824 -178062838 - MLT1H LTR MaLR -3 546 424 832 283 32 18 chr4 6225824 6226107 -178062555 - L2 LINE L2 -886 2428 2142 631 279 14 40 chr4 6226231 6226453 -178062209 + Charlie8 DNA MER1_type 15 230 -2187 235 246 0 16 chr4 6226552 6226613 -178062049 + Charlie8 DNA MER1_type 2358 2417 0 324 203 0 40 chr4 6227357 6227431 -178061231 + MIR3 SINE MIR 93 163 -45 760 257 44 22 chr4 6227515 6227741 -178060921 + MIR SINE MIR 12 242 -20 769 223 76 6 chr4 6227825 6228213 -178060449 + MLT1C LTR MaLR 6 457 -10 255 342 52 11 chr4 6228394 6228543 -178060119 - MIR SINE MIR -75 133 7 197 113 38 94 chr4 6228604 6228657 -178060005 + L2 LINE L2 3264 3313 0 794 271 161 35 chr4 6229700 6230154 -178058508 - MLT1H LTR MaLR -17 532 22 2433 149 5 3 chr4 6230270 6230659 -178058003 - MLT1B LTR MaLR 0 390 1 1730 179 3 20 chr4 6231714 6232010 -178056652 + AluJo SINE Alu 1 291 -21 398 214 12 0 chr4 6232887 6232971 -178055691 - Tigger7 DNA MER2_type -6 2481 2397 * 1560 152 243 28 chr4 6232966 6233399 -178055263 - Tigger7 DNA MER2_type -1961 526 1 542 234 97 0 chr4 6233818 6233963 -178054699 + MIR SINE MIR 23 181 -81 363 267 0 0 chr4 6234187 6234262 -178054400 + MIR SINE MIR 71 145 -117 962 279 59 50 chr4 6234264 6234870 -178053792 + MLT2E LTR ERVL 1 612 -16 727 283 57 11 chr4 6235001 6235284 -178053378 - L1ME4a LINE L1 -267 5854 5559 1102 194 18 31 chr4 6236795 6237022 -178051640 - MER58A DNA MER1_type 0 224 1 474 268 65 22 chr4 6237196 6237334 -178051328 - MIR SINE MIR -97 165 22 320 233 207 7 chr4 6237562 6237712 -178050950 + MIR SINE MIR 77 256 -6 284 258 46 0 chr4 6238360 6238488 -178050174 - MIR3 SINE MIR -14 194 81 240 225 32 79 chr4 6239446 6239577 -178049085 - MIR SINE MIR -41 221 101 315 291 48 0 chr4 6241265 6241376 -178047286 + MIR SINE MIR 51 175 -33 219 220 0 0 chr4 6244377 6244427 -178044235 + A-rich Low_complexity Low_complexity 1 50 0 474 231 70 14 chr4 6245135 6245278 -178043384 + MIR SINE MIR 46 196 -66 252 248 266 9 chr4 6245855 6245968 -178042694 + MER5A DNA MER1_type 35 176 -13 191 262 24 0 chr4 6246203 6246245 -178042417 - L2 LINE L2 -19 3294 3252 264 192 77 0 chr4 6246299 6246351 -178042311 - MIR SINE MIR -138 124 69 294 338 74 26 chr4 6247715 6248106 -178040556 - L1ME4a LINE L1 -748 5398 4989 2850 13 0 0 chr4 6248112 6248421 -178040241 - AluYa5 SINE Alu -2 309 1 395 272 69 60 chr4 6249416 6249648 -178039014 - L2 LINE L2 -89 3183 2950 268 239 28 0 chr4 6250095 6250166 -178038496 - MIR3 SINE MIR -48 160 88 3486 184 41 15 chr4 6250258 6250986 -178037676 + L1MB5 LINE L1 5428 6174 0 1495 164 7 49 chr4 6250992 6251278 -178037384 + AluJo SINE Alu 3 276 -36 732 267 71 0 chr4 6251389 6251599 -178037063 - MIR SINE MIR -20 242 18 890 213 53 12 chr4 6251741 6251910 -178036752 - AluJo SINE Alu -136 176 1 2080 122 6 56 chr4 6251919 6252238 -178036424 - AluSx SINE Alu -9 303 1 238 302 0 16 chr4 6252298 6252361 -178036301 + MIR SINE MIR 201 262 0 1767 215 111 39 chr4 6252388 6252927 -178035735 - MLT1G1 LTR MaLR -12 583 6 252 369 141 0 chr4 6253001 6253199 -178035463 + MIR SINE MIR 31 256 -6 260 236 107 8 chr4 6253836 6253966 -178034696 + MIR SINE MIR 97 243 -19 467 236 189 40 chr4 6253974 6254113 -178034549 + MIR SINE MIR 10 127 -135 1935 146 0 54 chr4 6254113 6254429 -178034233 + AluJb SINE Alu 1 299 -13 467 236 189 40 chr4 6254429 6254501 -178034161 + MIR SINE MIR 127 259 -3 2027 158 0 13 chr4 6254633 6254949 -178033713 - AluJb SINE Alu 0 312 1 1144 206 71 0 chr4 6254957 6255239 -178033423 - L1MD2 LINE L1 -1 6358 6057 2097 111 0 0 chr4 6255289 6255560 -178033102 + AluSx SINE Alu 1 271 -41 2175 52 4 17 chr4 6255565 6256089 -178032573 + LTR10C LTR ERV1 11 591 0 204 97 0 0 chr4 6256104 6256135 -178032527 + (A)n Simple_repeat Simple_repeat 1 31 0 395 252 112 7 chr4 6256175 6256318 -178032344 + MIR SINE MIR 2 159 -103 262 290 12 0 chr4 6256390 6256489 -178032173 - MIR SINE MIR -75 133 33 394 299 222 14 chr4 6256529 6256736 -178031926 + MIR SINE MIR 13 262 0 26 0 0 0 chr4 6256772 6256798 -178031864 + AT_rich Low_complexity Low_complexity 1 26 0 207 319 14 0 chr4 6258147 6258219 -178030443 + MIR SINE MIR 67 139 -123 2859 16 0 0 chr4 6259149 6259460 -178029202 - AluYa5 SINE Alu 0 311 1 395 272 69 60 chr4 6260455 6260687 -178027975 - L2 LINE L2 -89 3183 2950 268 239 28 0 chr4 6261134 6261205 -178027457 - MIR3 SINE MIR -48 160 88 3486 184 41 15 chr4 6261297 6262025 -178026637 + L1MB5 LINE L1 5428 6174 0 1495 164 7 49 chr4 6262031 6262317 -178026345 + AluJo SINE Alu 3 276 -36 732 267 71 0 chr4 6262428 6262638 -178026024 - MIR SINE MIR -20 242 18 263 266 25 13 chr4 6263534 6263613 -178025049 - MIR SINE MIR -64 144 65 272 204 0 19 chr4 6263979 6264033 -178024629 + MIR SINE MIR 58 110 -152 610 198 87 17 chr4 6264150 6264322 -178024340 + MIR SINE MIR 65 248 -14 318 287 0 0 chr4 6264364 6264507 -178024155 + (CAT)n Simple_repeat Simple_repeat 1 143 0 657 230 0 0 chr4 6264560 6264738 -178023924 + (CAT)n Simple_repeat Simple_repeat 2 179 0 693 247 0 0 chr4 6264767 6265108 -178023554 + (CAT)n Simple_repeat Simple_repeat 1 341 0 396 211 0 26 chr4 6265120 6265276 -178023386 + (CAT)n Simple_repeat Simple_repeat 1 152 0 942 185 58 5 chr4 6265694 6265883 -178022779 - MLT1B LTR MaLR 0 390 192 612 185 80 25 chr4 6265963 6266125 -178022537 - MLT1B LTR MaLR -217 173 3 678 329 40 9 chr4 6266139 6266364 -178022298 - MIR SINE MIR -11 251 20 3517 176 97 130 chr4 6266486 6266600 -178022062 + Charlie1a DNA MER1_type 85 201 -2560 1446 6 0 0 chr4 6266600 6266763 -178021899 + (CTATG)n Simple_repeat Simple_repeat 3 165 0 3517 176 97 130 chr4 6266763 6267293 -178021369 + Charlie1a DNA MER1_type 201 747 -2014 2242 110 0 3 chr4 6267293 6267583 -178021079 - AluSc SINE Alu -20 289 1 3517 176 97 130 chr4 6267583 6268312 -178020350 + Charlie1a DNA MER1_type 747 1414 -1347 2296 125 0 0 chr4 6268312 6268615 -178020047 + AluSx SINE Alu 1 303 -9 3517 176 97 130 chr4 6268615 6268656 -178020006 + Charlie1a DNA MER1_type 1414 1455 0 189 297 27 14 chr4 6268662 6268736 -178019926 - MIR SINE MIR -119 143 69 557 270 94 60 chr4 6268781 6269099 -178019563 + LTR16A LTR ERVL 76 404 -46 389 184 26 0 chr4 6269617 6269693 -178018969 + MIR SINE MIR 111 188 -74 313 289 118 7 chr4 6270392 6270527 -178018135 - L3 LINE CR1 -3 1574 1425 219 216 0 0 chr4 6270823 6270860 -178017802 - L2 LINE L2 -91 3181 3145 490 242 67 36 chr4 6270958 6271123 -178017539 + MIR SINE MIR 22 191 -71 634 249 30 18 chr4 6271586 6271755 -178016907 + MIR SINE MIR 22 192 -70 727 304 98 23 chr4 6271999 6272345 -178016317 + L3 LINE CR1 1204 1575 -2 1148 261 112 8 chr4 6272372 6272766 -178015896 - MLT1J2 LTR MaLR -3 447 13 329 289 125 0 chr4 6272804 6272908 -178015754 - L2 LINE L2 0 3272 3156 183 242 97 0 chr4 6273028 6273090 -178015572 + MIR SINE MIR 105 172 -90 221 315 33 11 chr4 6273553 6273645 -178015017 - MIR SINE MIR -122 140 47 383 269 187 8 chr4 6273866 6274000 -178014662 + MIR SINE MIR 4 161 -101 331 299 173 16 chr4 6274591 6274718 -178013944 - L2 LINE L2 -3 3269 3123 346 263 76 42 chr4 6274731 6274849 -178013813 + MIR SINE MIR 80 201 -61 311 276 51 27 chr4 6275258 6275397 -178013265 + MIR SINE MIR 16 154 -65 369 288 54 9 chr4 6275446 6275557 -178013105 + L2 LINE L2 3193 3308 -5 218 200 25 0 chr4 6275559 6275599 -178013063 + L2 LINE L2 3230 3270 -2 208 347 13 13 chr4 6275694 6275769 -178012893 - MIR SINE MIR -64 144 70 540 279 79 70 chr4 6275849 6276265 -178012397 - MLT1L LTR MaLR 0 615 196 327 299 31 20 chr4 6276463 6276601 -178012061 - MIR SINE MIR -67 141 16 495 195 108 104 chr4 6276926 6277213 -178011449 + L1MC4 LINE L1 7626 7913 -129 3678 161 63 6 chr4 6277256 6277919 -178010743 + MER44D DNA MER2_type 5 705 0 244 120 40 0 chr4 6277941 6277991 -178010671 + (CATATA)n Simple_repeat Simple_repeat 5 56 0 285 258 62 55 chr4 6278011 6278139 -178010523 + L1MC4 LINE L1 7914 8042 0 27 0 0 0 chr4 6278144 6278171 -178010491 + AT_rich Low_complexity Low_complexity 1 27 0 387 0 0 0 chr4 6278598 6278641 -178010021 + (CA)n Simple_repeat Simple_repeat 1 43 0 240 230 40 27 chr4 6279402 6279476 -178009186 + L2 LINE L2 2909 2983 -289 456 244 0 0 chr4 6279765 6279855 -178008807 - MIR SINE MIR -103 159 70 469 281 64 41 chr4 6280208 6280379 -178008283 + MER63A DNA MER1_type 1 175 -35 314 270 9 52 chr4 6280411 6280526 -178008136 - MIR SINE MIR -81 181 72 236 231 0 19 chr4 6280764 6280816 -178007846 - MIR SINE MIR -108 100 50 1564 215 55 25 chr4 6281119 6281482 -178007180 + MLT1A2 LTR MaLR 1 374 0 1786 157 168 8 chr4 6281746 6282115 -178006547 + MSTA LTR MaLR 1 428 0 9598 117 19 38 chr4 6282118 6283720 -178004942 + MSTA-int LTR MaLR 4 1575 -5 1895 164 143 11 chr4 6283732 6284110 -178004552 + MSTA LTR MaLR 1 428 0 709 293 57 51 chr4 6284134 6284342 -178004320 - MLT1J LTR MaLR -157 354 142 872 110 0 52 chr4 6284342 6284478 -178004184 + FLAM_C SINE Alu 5 133 0 709 293 57 51 chr4 6284478 6284621 -178004041 - MLT1J LTR MaLR -369 142 1 199 263 0 0 chr4 6285233 6285271 -178003391 + L2 LINE L2 3251 3288 -25 226 269 39 26 chr4 6285332 6285410 -178003252 + MIR SINE MIR 184 262 0 450 295 126 46 chr4 6285445 6285730 -178002932 - L2 LINE L2 0 3272 2965 709 242 66 16 chr4 6287366 6287557 -178001105 + MIR3 SINE MIR 1 201 -7 670 223 0 17 chr4 6287569 6287861 -178000801 + (ATGGTG)n Simple_repeat Simple_repeat 1 287 0 843 204 0 0 chr4 6287863 6288099 -178000563 + (TGG)n Simple_repeat Simple_repeat 1 236 0 243 204 0 0 chr4 6288121 6288175 -178000487 + (TGG)n Simple_repeat Simple_repeat 2 55 0 374 314 72 42 chr4 6288196 6288432 -178000230 - MIR SINE MIR -19 243 1 193 362 48 19 chr4 6288632 6288737 -177999925 + L2 LINE L2 2649 2756 -558 192 348 43 17 chr4 6288803 6288918 -177999744 + L2 LINE L2 2871 2988 -284 424 265 55 61 chr4 6289064 6289245 -177999417 + MIR SINE MIR 13 192 -70 1917 166 13 7 chr4 6289635 6289937 -177998725 - AluJb SINE Alu -8 304 1 201 283 208 9 chr4 6290230 6290336 -177998326 - MIR3 SINE MIR -52 156 30 360 255 145 86 chr4 6290638 6291066 -177997596 - MLT1J LTR MaLR -58 453 1 292 273 61 11 chr4 6291314 6291438 -177997224 + MIR SINE MIR 38 166 -59 4251 274 68 31 chr4 6291438 6291670 -177996992 + L1ME1 LINE L1 22 244 -6152 1586 214 97 3 chr4 6291670 6292030 -177996632 - MSTD LTR MaLR 0 396 3 4251 274 68 31 chr4 6292030 6293789 -177994873 + L1ME1 LINE L1 244 2086 -4310 2293 245 76 27 chr4 6293792 6294344 -177994318 + L1ME1 LINE L1 4923 5446 -789 1413 199 40 34 chr4 6294344 6294640 -177994022 + AluJo SINE Alu 5 302 -10 2293 245 76 27 chr4 6294640 6295347 -177993315 + L1ME1 LINE L1 5446 6230 -5 769 248 36 18 chr4 6295492 6295744 -177992918 - MIR SINE MIR 0 262 6 1613 132 53 64 chr4 6296298 6296613 -177992049 + AluSx SINE Alu 5 316 0 2494 191 48 4 chr4 6296967 6297450 -177991212 + MLT1D LTR MaLR 1 504 -1 571 299 107 14 chr4 6297616 6297897 -177990765 + LTR16A LTR ERVL 113 419 -31 682 172 86 32 chr4 6298214 6298400 -177990262 + MLT1H1 LTR MaLR 360 555 0 340 285 30 35 chr4 6298530 6298698 -177989964 - MIR SINE MIR -18 244 76 296 296 11 0 chr4 6298724 6298812 -177989850 - L2 LINE L2 0 3313 3225 184 295 45 45 chr4 6298822 6298934 -177989728 - L2 LINE L2 -205 3108 2997 273 278 204 0 chr4 6299285 6299393 -177989269 + MIR SINE MIR 23 152 -110 319 294 84 0 chr4 6299540 6299659 -177989003 - L2 LINE L2 0 3272 3144 187 333 107 0 chr4 6299703 6299787 -177988875 - L2 LINE L2 -248 3024 2932 236 335 143 11 chr4 6299838 6300020 -177988642 - L2 LINE L2 -508 2806 2601 407 240 224 22 chr4 6300024 6300203 -177988459 - L2 LINE L2 0 3313 3099 263 240 74 25 chr4 6300570 6300691 -177987971 - L1ME3 LINE L1 -8 6154 6028 217 296 67 137 chr4 6301037 6301321 -177987341 + L2 LINE L2 2943 3206 -66 491 273 86 0 chr4 6301700 6301828 -177986834 + MIR SINE MIR 35 173 -89 21 0 0 0 chr4 6302487 6302508 -177986154 + AT_rich Low_complexity Low_complexity 1 21 0 229 258 61 0 chr4 6302678 6302744 -177985918 - MIR SINE MIR -78 184 115 187 227 0 91 chr4 6303477 6303543 -177985119 + MIR SINE MIR 64 123 -139 412 274 49 97 chr4 6303716 6303942 -177984720 + L2 LINE L2 3027 3241 -31 2067 171 28 6 chr4 6303942 6304299 -177984363 + MLT1A1 LTR MaLR 1 365 0 185 65 32 0 chr4 6304329 6304360 -177984302 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 272 296 22 44 chr4 6304361 6304496 -177984166 - MIR SINE MIR -78 184 53 573 297 124 39 chr4 6305438 6305873 -177982789 + L2 LINE L2 2216 2687 -627 535 296 77 6 chr4 6305941 6306110 -177982552 - MIR SINE MIR -19 243 63 252 231 0 0 chr4 6306555 6306607 -177982055 + L1MB1 LINE L1 6119 6170 -19 408 173 0 36 chr4 6306613 6306723 -177981939 + GA-rich Low_complexity Low_complexity 4 109 0 485 242 22 67 chr4 6306740 6306918 -177981744 - MIR3 SINE MIR -9 199 30 7820 123 15 7 chr4 6307957 6309977 -177978685 + L1PA8A LINE L1 4095 6131 0 290 198 74 12 chr4 6310056 6310137 -177978525 + MIR SINE MIR 105 190 -72 273 281 0 62 chr4 6310448 6310544 -177978118 - MIR3 SINE MIR -32 176 87 2212 139 71 15 chr4 6310573 6310840 -177977822 - MSTB1 LTR MaLR -14 418 120 2700 101 0 5 chr4 6310840 6311215 -177977447 + THE1C LTR MaLR 3 375 0 2212 139 71 15 chr4 6311215 6311343 -177977319 - MSTB1 LTR MaLR -312 120 1 185 247 104 52 chr4 6311809 6311886 -177976776 + L2 LINE L2 3208 3288 -25 359 235 82 0 chr4 6313675 6313773 -177974889 - MIR SINE MIR -109 153 48 385 228 66 81 chr4 6314146 6314282 -177974380 + MIR SINE MIR 2 135 -127 317 291 10 10 chr4 6315146 6315249 -177973413 + MIR SINE MIR 77 179 -83 585 222 16 16 chr4 6315291 6315417 -177973245 + MIR SINE MIR 23 148 -114 1983 154 128 8 chr4 6315425 6315807 -177972855 + MSTA LTR MaLR 1 428 0 7867 168 45 36 chr4 6315807 6317444 -177971218 + MSTA-int LTR MaLR 1 1651 0 1952 135 141 8 chr4 6317444 6317821 -177970841 + MSTA LTR MaLR 1 427 -1 252 363 40 45 chr4 6317845 6318068 -177970594 - MIR SINE MIR -31 231 10 213 39 0 0 chr4 6318450 6318476 -177970186 + (TTCA)n Simple_repeat Simple_repeat 2 27 0 3763 157 21 30 chr4 6318559 6319326 -177969336 + L1MB3 LINE L1 5422 6181 -2 2710 90 0 6 chr4 6319479 6319845 -177968817 - THE1B LTR MaLR 0 364 1 224 161 138 46 chr4 6319913 6320000 -177968662 - MER5A DNA MER1_type -81 108 14 248 163 0 0 chr4 6320107 6320150 -177968512 - MLT2C2 LTR ERVL -2 462 420 232 109 18 18 chr4 6320153 6320208 -177968454 + (TC)n Simple_repeat Simple_repeat 2 56 0 * 314 289 7 0 chr4 6320205 6320354 -177968308 + (TCCA)n Simple_repeat Simple_repeat 3 152 0 * 429 195 11 38 chr4 6320328 6320513 -177968149 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 2466 81 0 0 chr4 6320552 6320848 -177967814 - AluY SINE Alu -13 298 3 2014 174 56 5 chr4 6320855 6321245 -177967417 - MLT2C2 LTR ERVL -50 414 5 394 293 45 19 chr4 6321252 6321409 -177967253 + MIR SINE MIR 73 233 -29 1448 243 91 7 chr4 6322003 6322422 -177966240 + MLT1C LTR MaLR 6 459 -8 206 215 46 31 chr4 6322644 6322709 -177965953 + L2 LINE L2 3236 3301 -12 395 178 22 40 chr4 6323032 6323263 -177965399 + CT-rich Low_complexity Low_complexity 1 227 0 277 255 57 28 chr4 6324289 6324395 -177964267 - MIR SINE MIR -63 145 37 236 212 45 15 chr4 6324408 6324474 -177964188 - L3 LINE CR1 -667 910 843 355 311 106 8 chr4 6324504 6324768 -177963894 - L1ME4a LINE L1 0 6121 5832 219 214 0 0 chr4 6324784 6324826 -177963836 - MIR SINE MIR -14 248 207 1813 120 53 25 chr4 6324939 6325222 -177963440 - AluJb SINE Alu -21 291 1 1295 203 77 40 chr4 6325292 6325461 -177963201 + MLT1B LTR MaLR 1 162 -228 2148 71 15 4 chr4 6325461 6325730 -177962932 + AluY SINE Alu 1 272 -39 1295 203 77 40 chr4 6325730 6325935 -177962727 + MLT1B LTR MaLR 162 389 -1 448 252 8 0 chr4 6325936 6326059 -177962603 + L1MA10 LINE L1 6204 6327 -7 445 258 104 16 chr4 6326240 6326422 -177962240 + MIR SINE MIR 63 260 -2 181 255 0 43 chr4 6326542 6326589 -177962073 - MER5A DNA MER1_type -5 184 140 418 143 12 0 chr4 6326599 6326683 -177961979 - L1PB2 LINE L1 0 6151 6067 2183 96 0 0 chr4 6326687 6326988 -177961674 + L1PB1 LINE L1 5823 6123 -28 1280 108 36 0 chr4 6326999 6327193 -177961469 - L1PB2 LINE L1 -366 5785 5585 427 303 75 11 chr4 6327476 6327664 -177960998 - MIR SINE MIR -62 200 1 5914 195 17 15 chr4 6327774 6328995 -177959667 + L1MC1 LINE L1 4285 5503 -830 2164 147 28 19 chr4 6328995 6329356 -177959306 - THE1B LTR MaLR 0 364 1 5914 195 17 15 chr4 6329356 6329892 -177958770 + L1MC1 LINE L1 5503 6049 -284 2015 164 3 0 chr4 6329892 6330202 -177958460 + AluJb SINE Alu 1 311 -1 5914 195 17 15 chr4 6330202 6330485 -177958177 + L1MC1 LINE L1 6049 6330 -3 944 246 87 48 chr4 6330495 6330726 -177957936 - MLT1I LTR MaLR 0 409 158 1955 174 0 0 chr4 6330726 6331019 -177957643 - AluJo SINE Alu -19 293 1 944 246 87 48 chr4 6331019 6331144 -177957518 - MLT1I LTR MaLR -251 158 39 251 375 10 0 chr4 6331426 6331530 -177957132 + MIR SINE MIR 41 145 -63 296 322 26 0 chr4 6331676 6331791 -177956871 + Charlie8 DNA MER1_type 118 235 -2182 353 265 8 8 chr4 6331956 6332215 -177956447 + (TG)n Simple_repeat Simple_repeat 1 259 0 229 238 0 32 chr4 6333077 6333140 -177955522 + (CAGAGA)n Simple_repeat Simple_repeat 3 63 0 229 118 39 0 chr4 6333144 6333195 -177955467 + GA-rich Low_complexity Low_complexity 1 53 0 297 311 60 20 chr4 6333790 6333941 -177954721 - MIR SINE MIR -54 208 52 442 257 164 13 chr4 6334089 6334241 -177954421 - MER5A DNA MER1_type -6 183 9 368 287 49 18 chr4 6334430 6334594 -177954068 + MIR SINE MIR 20 188 -74 992 224 38 19 chr4 6334602 6334865 -177953797 - MLT1C LTR MaLR 0 467 200 542 278 25 0 chr4 6335354 6335516 -177953146 - MER5A DNA MER1_type 0 189 24 237 327 40 40 chr4 6335511 6335612 -177953050 - MIR SINE MIR -91 171 71 * 1869 124 4 18 chr4 6336118 6336393 -177952269 + AluSx SINE Alu 41 311 -1 283 224 0 0 chr4 6337120 6337178 -177951484 + MIR SINE MIR 62 119 -143 191 146 24 0 chr4 6337544 6337585 -177951077 + (TGGG)n Simple_repeat Simple_repeat 3 44 0 227 254 53 30 chr4 6338172 6338273 -177950389 - MIR SINE MIR -58 150 47 226 234 0 0 chr4 6338631 6338678 -177949984 + MIR SINE MIR 107 153 -109 1276 216 41 84 chr4 6338870 6339356 -177949306 + MLT1C LTR MaLR 1 465 -2 2189 106 0 11 chr4 6339544 6339855 -177948807 + AluSx SINE Alu 3 310 0 2294 111 0 0 chr4 6339932 6340229 -177948433 - AluSx SINE Alu -15 297 1 284 300 114 14 chr4 6340708 6340848 -177947814 + MIR SINE MIR 59 212 -50 236 271 59 0 chr4 6340967 6341052 -177947610 + MIR SINE MIR 109 198 -64 252 298 58 41 chr4 6341815 6341936 -177946726 + MIR SINE MIR 78 200 -62 427 223 35 24 chr4 6342072 6342232 -177946430 - MIR SINE MIR 0 262 100 923 60 0 0 chr4 6342278 6342395 -177946267 + FLAM_C SINE Alu 1 117 -16 1175 269 71 35 chr4 6342395 6342914 -177945748 - L2 LINE L2 -6 3307 2776 190 342 51 0 chr4 6343111 6343190 -177945472 + MIR SINE MIR 98 180 -82 385 268 45 45 chr4 6343260 6343417 -177945245 - MIR SINE MIR -85 177 21 279 276 35 11 chr4 6344071 6344158 -177944504 + MIR3 SINE MIR 82 170 -38 1898 156 7 13 chr4 6344173 6344480 -177944182 + AluJo SINE Alu 1 305 -7 342 297 130 0 chr4 6344955 6345093 -177943569 + MIR SINE MIR 105 260 -2 217 357 84 7 chr4 6345558 6345712 -177942950 + MIR SINE MIR 49 214 -48 299 344 58 7 chr4 6346009 6346163 -177942499 + MIR3 SINE MIR 25 186 -22 262 0 26 26 chr4 6346164 6346203 -177942459 + (TTTTG)n Simple_repeat Simple_repeat 4 42 0 1679 127 27 60 chr4 6348309 6348609 -177940053 - AluJo SINE Alu -13 299 10 511 290 32 68 chr4 6348679 6348927 -177939735 + MIR SINE MIR 20 258 -4 1206 122 0 0 chr4 6351373 6351569 -177937093 + Tigger4(Zombi) DNA MER2_type 2479 2674 -57 1083 206 50 52 chr4 6351573 6351937 -177936725 + THE1C LTR MaLR 1 363 -12 189 154 0 0 chr4 6353291 6353330 -177935332 + (CA)n Simple_repeat Simple_repeat 1 39 0 820 247 94 66 chr4 6354109 6354464 -177934198 + MLT1D LTR MaLR 24 397 -108 2160 125 0 3 chr4 6354464 6354759 -177933903 - AluSx SINE Alu -18 294 1 820 247 94 66 chr4 6354759 6354872 -177933790 + MLT1D LTR MaLR 397 505 0 479 216 58 29 chr4 6354949 6355162 -177933500 - L1M LINE L1 -738 5424 5207 1080 180 149 34 chr4 6355673 6355968 -177932694 - THE1C LTR MaLR -46 329 1 520 343 30 4 chr4 6356238 6356509 -177932153 + L1MC4 LINE L1 6446 6723 -1319 181 219 0 109 chr4 6357461 6357525 -177931137 - MIR3 SINE MIR 0 208 152 901 259 214 5 chr4 6357556 6357939 -177930723 - L2 LINE L2 0 3313 2851 21 0 0 0 chr4 6358514 6358535 -177930127 + AT_rich Low_complexity Low_complexity 1 21 0 303 289 10 10 chr4 6359060 6359157 -177929505 + L1M4 LINE L1 4923 5019 -1127 2158 89 25 0 chr4 6359166 6359447 -177929215 + AluSp SINE Alu 1 288 -25 244 279 55 33 chr4 6359466 6359539 -177929123 + L1M4 LINE L1 5010 5080 -1066 2352 100 0 6 chr4 6359539 6359850 -177928812 - AluY SINE Alu -2 309 1 244 279 55 33 chr4 6359850 6359959 -177928703 + L1M4 LINE L1 5080 5196 -950 563 203 42 10 chr4 6360070 6360282 -177928380 + L1M4 LINE L1 5207 5424 -738 1027 240 92 63 chr4 6360359 6360472 -177928190 - MLT1D LTR MaLR 0 505 397 2160 125 0 3 chr4 6360472 6360767 -177927895 + AluSx SINE Alu 1 294 -18 1027 240 92 63 chr4 6360767 6361144 -177927518 - MLT1D LTR MaLR -108 397 1 3415 130 65 25 chr4 6361909 6362424 -177926238 - MER51A LTR ERV1 -9 625 81 2322 96 0 0 chr4 6362424 6362716 -177925946 - AluSq SINE Alu -21 292 1 3415 130 65 25 chr4 6362716 6362801 -177925861 - MER51A LTR ERV1 -553 81 1 1281 122 0 21 chr4 6362999 6363187 -177925475 - FRAM SINE Alu 0 176 1 340 200 147 36 chr4 6363320 6363459 -177925203 + MIR SINE MIR 2 153 -66 257 250 10 52 chr4 6363662 6363758 -177924904 + MIR SINE MIR 109 200 -62 351 113 0 0 chr4 6363806 6363859 -177924803 + (TTA)n Simple_repeat Simple_repeat 1 53 0 1207 289 36 31 chr4 6364575 6365012 -177923650 - MLT1J LTR MaLR 0 511 38 339 261 89 52 chr4 6365098 6365237 -177923425 + MIR SINE MIR 4 146 -66 731 171 0 0 chr4 6365425 6365563 -177923099 - FRAM SINE Alu 0 166 29 219 231 0 0 chr4 6365701 6365740 -177922922 - MER5A DNA MER1_type -90 99 61 1952 117 4 0 chr4 6365809 6366065 -177922597 + AluSx SINE Alu 1 257 -55 210 37 0 0 chr4 6366071 6366098 -177922564 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 817 150 0 8 chr4 6366107 6366227 -177922435 - AluJb SINE Alu -84 228 110 726 139 0 0 chr4 6366341 6366456 -177922206 + AluSp/q SINE Alu 193 307 -6 480 146 9 27 chr4 6366456 6366566 -177922096 + GA-rich Low_complexity Low_complexity 1 108 0 189 0 0 0 chr4 6367294 6367315 -177921347 + (TTA)n Simple_repeat Simple_repeat 1 21 0 280 306 8 24 chr4 6368034 6368158 -177920504 + GA-rich Low_complexity Low_complexity 4 125 0 22 80 0 0 chr4 6368530 6368580 -177920082 + GC_rich Low_complexity Low_complexity 1 50 0 25 65 0 0 chr4 6368737 6368783 -177919879 + GC_rich Low_complexity Low_complexity 1 46 0 22 35 0 0 chr4 6370071 6370100 -177918562 + GC_rich Low_complexity Low_complexity 1 29 0 209 93 70 0 chr4 6370219 6370262 -177918400 + T-rich Low_complexity Low_complexity 3 48 0 236 309 40 92 chr4 6371228 6371380 -177917282 + MIR SINE MIR 119 262 0 361 257 20 61 chr4 6372073 6372221 -177916441 - MIR3 SINE MIR -26 182 41 351 65 0 0 chr4 6372305 6372351 -177916311 + (A)n Simple_repeat Simple_repeat 1 46 0 21 0 0 0 chr4 6372510 6372531 -177916131 + AT_rich Low_complexity Low_complexity 1 21 0 27 81 0 0 chr4 6372610 6372672 -177915990 + AT_rich Low_complexity Low_complexity 1 62 0 221 246 35 0 chr4 6374308 6374365 -177914297 + MIR3 SINE MIR 98 156 -52 22 106 0 0 chr4 6374687 6374772 -177913890 + GC_rich Low_complexity Low_complexity 1 85 0 319 350 34 0 chr4 6375278 6375395 -177913267 - MIR SINE MIR -122 140 20 23 54 0 0 chr4 6376071 6376108 -177912554 + GC_rich Low_complexity Low_complexity 1 37 0 356 239 17 39 chr4 6376488 6376668 -177911994 + (CA)n Simple_repeat Simple_repeat 1 176 0 405 293 88 7 chr4 6377502 6377649 -177911013 + MIR SINE MIR 33 191 -71 382 326 79 26 chr4 6378709 6378936 -177909726 - MIR SINE MIR -6 256 18 412 224 84 0 chr4 6379301 6379408 -177909254 - MIR SINE MIR -66 196 81 192 251 57 32 chr4 6379676 6379770 -177908892 - MIR SINE MIR -55 153 56 292 309 122 26 chr4 6379820 6380050 -177908612 - L2 LINE L2 -136 3177 2926 346 324 20 0 chr4 6380690 6380838 -177907824 - MIR SINE MIR -36 226 76 277 225 56 0 chr4 6380856 6380927 -177907735 + MER96 DNA MER1_type? 20 94 -81 257 304 16 11 chr4 6381185 6381364 -177907298 - MIR SINE MIR -19 243 65 2028 238 97 54 chr4 6382940 6383819 -177904843 + MER45C DNA AcHobo 5 953 0 289 254 182 39 chr4 6384385 6384566 -177904096 + L2 LINE L2 3107 3313 0 388 272 7 37 chr4 6384697 6384833 -177903829 - L2 LINE L2 -11 3302 3171 22 0 0 0 chr4 6384898 6384920 -177903742 + AT_rich Low_complexity Low_complexity 1 22 0 1057 139 0 17 chr4 6385075 6385248 -177903414 - L1PA8 LINE L1 -8 6164 5995 2113 102 0 54 chr4 6385267 6385580 -177903082 - AluSx SINE Alu -16 296 1 394 325 8 0 chr4 6385585 6385708 -177902954 - MIR SINE MIR -118 144 21 984 291 91 20 chr4 6385769 6386263 -177902399 + L2 LINE L2 2783 3312 -1 2046 126 0 36 chr4 6386266 6386575 -177902087 - AluSx SINE Alu -14 298 1 803 244 16 51 chr4 6387190 6387444 -177901218 + MIR SINE MIR 3 247 -15 280 333 56 43 chr4 6387597 6387759 -177900903 - MIR SINE MIR -76 186 23 2124 138 0 3 chr4 6388181 6388472 -177900190 - AluJb SINE Alu -22 290 1 266 265 72 66 chr4 6388482 6388663 -177899999 - MIR SINE MIR -73 189 8 35 54 0 0 chr4 6389210 6389266 -177899396 + AT_rich Low_complexity Low_complexity 1 56 0 2206 287 65 14 chr4 6389351 6390232 -177898430 - HAL1 LINE L1 0 2507 1582 530 251 151 0 chr4 6390264 6390463 -177898199 - HAL1 LINE L1 -976 1531 1303 2091 180 30 13 chr4 6390466 6390861 -177897801 + Tigger4(Zombi) DNA MER2_type 1 402 -2329 2301 101 0 0 chr4 6390866 6391162 -177897500 + AluSq SINE Alu 1 296 -17 25 31 0 0 chr4 6391162 6391194 -177897468 + AT_rich Low_complexity Low_complexity 1 32 0 2067 161 50 48 chr4 6391194 6391655 -177897007 + Tigger4(Zombi) DNA MER2_type 392 853 -1878 703 192 8 0 chr4 6391655 6391780 -177896882 + AluJ SINE Alu 1 126 -186 819 206 16 38 chr4 6391994 6392178 -177896484 + AluJ SINE Alu 116 295 -17 1263 141 0 0 chr4 6392178 6392369 -177896293 + AluSc SINE Alu 119 309 0 2482 142 21 16 chr4 6392386 6392809 -177895853 + Tigger4(Zombi) DNA MER2_type 829 1253 -1478 889 144 0 0 chr4 6392844 6392962 -177895700 - FLAM_C SINE Alu -25 118 1 5501 131 24 11 chr4 6392964 6393028 -177895634 + Tigger4(Zombi) DNA MER2_type 1237 1299 -1432 1583 183 72 11 chr4 6393028 6393330 -177895332 - AluJo SINE Alu 0 312 1 5501 131 24 11 chr4 6393330 6394177 -177894485 + Tigger4(Zombi) DNA MER2_type 1299 2160 -571 975 79 9 2 chr4 6394215 6394474 -177894188 + AluSx SINE Alu 1 304 0 1439 148 52 20 chr4 6394484 6394789 -177893873 + Tigger4(Zombi) DNA MER2_type 2178 2492 -239 2588 117 2 8 chr4 6394926 6395327 -177893335 - L1P LINE L1 -5745 401 3 248 208 31 39 chr4 6395328 6395458 -177893204 - L1MEc LINE L1 -2185 4030 3902 472 151 54 0 chr4 6395458 6395551 -177893111 - MSTB LTR MaLR 0 426 329 2825 206 20 43 chr4 6395564 6395898 -177892764 - L1MEc LINE L1 -3066 3149 2809 1616 206 7 4 chr4 6395898 6396200 -177892462 - AluJb SINE Alu 0 303 1 2825 206 20 43 chr4 6396200 6396719 -177891943 - L1MEc LINE L1 -3406 2809 2315 15003 92 1 1 chr4 6397000 6399188 -177889474 + L1P LINE L1 2814 5001 -1145 726 139 0 0 chr4 6399802 6399917 -177888745 + AluSp/q SINE Alu 193 307 -6 188 0 0 69 chr4 6399917 6399946 -177888716 + (GGA)n Simple_repeat Simple_repeat 1 27 0 37 70 0 0 chr4 6401207 6401250 -177887412 + AT_rich Low_complexity Low_complexity 1 43 0 213 194 0 0 chr4 6401460 6401496 -177887166 + (TG)n Simple_repeat Simple_repeat 1 36 0 4343 268 41 20 chr4 6401496 6402140 -177886522 - L1MEc LINE L1 -4318 2078 1449 203 0 0 36 chr4 6402140 6402168 -177886494 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 1141 196 61 88 chr4 6402172 6402468 -177886194 - AluJo SINE Alu -14 288 1 4343 268 41 20 chr4 6402468 6403413 -177885249 - L1MEc LINE L1 -4949 1447 450 382 333 7 0 chr4 6403430 6403577 -177885085 - L1MEc LINE L1 -6026 370 223 1684 171 171 16 chr4 6403623 6403992 -177884670 + MSTA LTR MaLR 1 426 -2 1488 203 51 60 chr4 6403995 6404429 -177884233 + MLT1D LTR MaLR 76 505 0 1866 244 26 2 chr4 6404431 6404891 -177883771 + MLT1D-int LTR MaLR 4 474 -897 1284 204 110 31 chr4 6404864 6405247 -177883415 - L1ME2 LINE L1 -100 6064 5652 * 235 164 46 46 chr4 6405796 6405948 -177882714 + (TA)n Simple_repeat Simple_repeat 1 152 0 943 273 94 59 chr4 6406180 6406605 -177882057 + MLT1J1 LTR MaLR 7 446 0 787 196 111 7 chr4 6406648 6406801 -177881861 + FAM SINE Alu 1 169 -6 35613 29 2 0 chr4 6406901 6411887 -177876775 + L1PA3 LINE L1 1161 6154 -1 964 286 23 0 chr4 6411858 6412162 -177876500 + L1M4 LINE L1 3928 4238 -1908 * 4827 66 11 1 chr4 6412312 6413351 -177875311 + L1PA7 LINE L1 5005 6154 0 209 122 0 24 chr4 6413692 6413733 -177874929 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 21 0 0 0 chr4 6414114 6414135 -177874527 + AT_rich Low_complexity Low_complexity 1 21 0 293 297 50 50 chr4 6414164 6414277 -177874385 - MIR SINE MIR -74 188 73 533 243 18 0 chr4 6414277 6414388 -177874274 - MER81 DNA DNA -1 113 1 293 297 50 50 chr4 6414388 6414456 -177874206 - MIR SINE MIR -188 74 7 188 317 0 37 chr4 6414478 6414560 -177874102 - MIR SINE MIR -163 99 21 2040 80 3 45 chr4 6414851 6415137 -177873525 + AluSx SINE Alu 1 274 -38 297 118 0 0 chr4 6415245 6415296 -177873366 + (TC)n Simple_repeat Simple_repeat 2 52 0 894 272 33 22 chr4 6415647 6415919 -177872743 + MLT1J LTR MaLR 11 285 -226 302 281 26 18 chr4 6415951 6416065 -177872597 + L1MEd LINE L1 693 807 -5312 260 288 25 0 chr4 6416076 6416156 -177872506 + MLT1J LTR MaLR 313 394 -117 2434 159 23 21 chr4 6416295 6416722 -177871940 + MSTB1 LTR MaLR 1 428 -4 323 271 189 0 chr4 6416942 6417064 -177871598 - MIR SINE MIR -1 261 117 242 231 68 60 chr4 6417062 6417179 -177871483 + L2 LINE L2 2861 2978 -294 * 578 206 48 0 chr4 6417213 6417359 -177871303 - MER53 DNA DNA -8 181 29 2280 117 0 0 chr4 6417374 6417683 -177870979 - AluSc SINE Alu 0 309 1 2168 124 7 7 chr4 6417717 6418024 -177870638 - AluSx SINE Alu -5 307 1 460 287 29 86 chr4 6418028 6418342 -177870320 + L2 LINE L2 2972 3267 -5 637 279 36 0 chr4 6418525 6418744 -177869918 + MIR SINE MIR 25 251 -11 192 301 122 97 chr4 6418756 6418911 -177869751 + L2 LINE L2 2846 2996 -276 2052 114 14 0 chr4 6418911 6419191 -177869471 + AluSg SINE Alu 1 284 -26 192 301 122 97 chr4 6419191 6419427 -177869235 + L2 LINE L2 2996 3247 -25 268 330 78 28 chr4 6419834 6419999 -177868663 - MIR SINE MIR -65 143 4 250 233 0 0 chr4 6420173 6420233 -177868429 + (TTCA)n Simple_repeat Simple_repeat 2 61 0 3440 234 58 28 chr4 6420893 6420923 -177867739 - MER45B DNA AcHobo -570 1011 983 4063 113 33 6 chr4 6420923 6421568 -177867094 + L1PB2 LINE L1 5482 6143 -8 3440 234 58 28 chr4 6421568 6421658 -177867004 - MER45B DNA AcHobo -598 983 897 1980 142 26 13 chr4 6421658 6421961 -177866701 + AluSx SINE Alu 1 307 -5 3440 234 58 28 chr4 6421961 6422764 -177865898 - MER45B DNA AcHobo -684 897 59 202 329 38 0 chr4 6423950 6424029 -177864633 - MIR SINE MIR -117 145 64 287 239 5 178 chr4 6424682 6424879 -177863783 - MLT1H LTR MaLR -375 174 12 343 309 20 26 chr4 6424943 6425095 -177863567 + MIR SINE MIR 47 197 -65 467 197 12 4 chr4 6425306 6425408 -177863254 + MER2 DNA MER2_type 1 101 -138 276 30 0 0 chr4 6425515 6425548 -177863114 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 458 171 45 0 chr4 6426327 6426415 -177862247 - MIR3 SINE MIR -53 155 64 216 0 0 0 chr4 6426432 6426456 -177862206 + (TC)n Simple_repeat Simple_repeat 1 24 0 * 342 0 0 0 chr4 6426455 6426493 -177862169 + (CA)n Simple_repeat Simple_repeat 1 38 0 364 224 12 0 chr4 6427098 6427183 -177861479 + MIR SINE MIR 71 156 -106 243 61 0 0 chr4 6427723 6427756 -177860906 + (TC)n Simple_repeat Simple_repeat 1 33 0 2129 129 44 41 chr4 6428021 6428384 -177860278 - THE1B LTR MaLR 0 364 1 319 288 8 45 chr4 6428858 6428905 -177859757 - MIR3 SINE MIR -52 156 109 2048 143 12 70 chr4 6428905 6429319 -177859343 + MLT1B LTR MaLR 1 390 0 319 288 8 45 chr4 6429319 6429403 -177859259 - MIR3 SINE MIR -99 109 30 2218 101 0 20 chr4 6429585 6429891 -177858771 + AluSq SINE Alu 1 300 -13 435 282 65 77 chr4 6430124 6430372 -177858290 + MIR SINE MIR 15 259 -3 23 0 0 0 chr4 6430440 6430463 -177858199 + AT_rich Low_complexity Low_complexity 1 23 0 414 324 0 0 chr4 6431633 6431741 -177856921 - MER81 DNA DNA -6 108 1 474 259 22 22 chr4 6432100 6432239 -177856423 - MIR SINE MIR -118 144 6 248 232 101 0 chr4 6432553 6432622 -177856040 + MIR SINE MIR 117 192 -70 238 236 28 14 chr4 6432651 6432723 -177855939 - MIR SINE MIR -6 256 184 573 157 102 0 chr4 6432829 6432937 -177855725 - MER53 DNA DNA -68 121 3 776 173 161 0 chr4 6433356 6433518 -177855144 + MER5A DNA MER1_type 2 189 0 280 263 34 42 chr4 6434765 6434883 -177853779 - L2 LINE L2 -70 3243 3127 2856 239 31 50 chr4 6434975 6435429 -177853233 - L1ME1 LINE L1 -5 6161 5729 1702 154 48 0 chr4 6435429 6435702 -177852960 - AluJb SINE Alu -26 286 1 2856 239 31 50 chr4 6435702 6436136 -177852526 - L1ME1 LINE L1 -437 5729 5289 385 246 64 0 chr4 6436118 6436228 -177852434 - L1ME1 LINE L1 -1741 4405 4289 * 2085 99 18 0 chr4 6436360 6436633 -177852029 - AluSx SINE Alu -30 282 5 1589 127 0 27 chr4 6436641 6436841 -177851821 + Tigger4(Zombi) DNA MER2_type 2479 2672 -59 1919 140 64 17 chr4 6436841 6437199 -177851463 + THE1C LTR MaLR 1 375 0 1589 127 0 27 chr4 6437199 6437258 -177851404 + Tigger4(Zombi) DNA MER2_type 2672 2731 0 1125 253 111 84 chr4 6437277 6438063 -177850599 - HAL1 LINE L1 -1254 1253 447 330 210 0 25 chr4 6438243 6438324 -177850338 + MLT1C LTR MaLR 386 464 -3 282 266 9 101 chr4 6438771 6438880 -177849782 - MIR SINE MIR -74 134 36 1388 193 46 21 chr4 6439407 6439734 -177848928 + MLT1A1 LTR MaLR 31 365 0 270 145 0 157 chr4 6440365 6440448 -177848214 + MIR SINE MIR 107 176 -86 200 345 164 0 chr4 6440599 6440709 -177847953 + L2 LINE L2 3180 3307 -6 214 338 80 13 chr4 6441616 6441767 -177846895 + MIR SINE MIR 23 183 -79 237 33 0 0 chr4 6441815 6441845 -177846817 + (TG)n Simple_repeat Simple_repeat 2 31 0 364 224 0 13 chr4 6442698 6442774 -177845888 - AluJb SINE Alu 0 302 228 950 174 17 17 chr4 6442774 6442946 -177845716 - AluJb SINE Alu -140 172 1 569 312 45 0 chr4 6443213 6443415 -177845247 + MIR SINE MIR 1 211 -51 1386 222 58 51 chr4 6443434 6443885 -177844777 + MLT1D LTR MaLR 1 454 -51 338 133 17 0 chr4 6445546 6445606 -177843056 + MLT1D LTR MaLR 442 502 -3 662 157 33 0 chr4 6445828 6445949 -177842713 + MLT1D LTR MaLR 1 125 -380 1923 160 37 62 chr4 6445951 6446394 -177842268 + MLT2B2 LTR ERVL 3 414 0 420 147 0 15 chr4 6446398 6446466 -177842196 - MLT1E1 LTR MaLR -1 653 587 1832 209 27 8 chr4 6446469 6446838 -177841824 + MLT1D LTR MaLR 130 505 0 1661 205 67 14 chr4 6446931 6447302 -177841360 - MLT1E LTR MaLR 0 593 203 303 265 61 10 chr4 6447338 6447391 -177841271 - MLT1E LTR MaLR -490 103 54 1979 122 49 30 chr4 6447391 6447759 -177840903 - THE1C LTR MaLR 0 375 1 303 265 61 10 chr4 6447759 6447803 -177840859 - MLT1E LTR MaLR -539 54 1 432 255 102 13 chr4 6447908 6448065 -177840597 + MIR SINE MIR 41 211 -51 352 287 119 45 chr4 6448184 6448428 -177840234 + MLT1J LTR MaLR 5 266 -245 265 238 105 9 chr4 6448466 6448571 -177840091 + MLT1J LTR MaLR 347 461 -50 890 198 104 85 chr4 6449237 6449601 -177839061 - MLT1C LTR MaLR -96 371 1 267 274 161 32 chr4 6449633 6449943 -177838719 - MLT1K LTR MaLR -16 572 223 1605 239 67 16 chr4 6450440 6450876 -177837786 - MLT1C LTR MaLR 0 467 10 440 188 50 0 chr4 6450936 6451037 -177837625 + LTR16C LTR ERVL 385 490 -1 372 280 17 25 chr4 6451179 6451297 -177837365 - MIR SINE MIR -100 162 46 3878 161 38 56 chr4 6451552 6452195 -177836467 - L1MA7 LINE L1 -1 6290 5637 1932 140 15 82 chr4 6452195 6452595 -177836067 - THE1C LTR MaLR -2 373 1 3878 161 38 56 chr4 6452595 6452659 -177836003 - L1MA7 LINE L1 -654 5637 5573 2536 70 3 0 chr4 6452659 6452961 -177835701 - AluY SINE Alu -8 303 1 3878 161 38 56 chr4 6452961 6453092 -177835570 - L1MA7 LINE L1 -718 5573 5466 375 304 83 80 chr4 6453583 6454043 -177834619 - MLT1K LTR MaLR -22 566 106 404 241 12 0 chr4 6454134 6454217 -177834445 - HERV16 LTR ERVL -2072 2924 2841 1318 326 73 30 chr4 6454249 6455175 -177833487 - HERV16 LTR ERVL -2264 2732 1765 5647 160 28 29 chr4 6455255 6456727 -177831935 - L1MA4 LINE L1 -2 6298 4804 * 10385 177 16 3 chr4 6456726 6458783 -177829879 + L1 LINE L1 2628 4711 -1435 1103 130 0 0 chr4 6458783 6458983 -177829679 + AluSg/x SINE Alu 131 330 0 712 101 0 0 chr4 6458983 6459082 -177829580 + L1 LINE L1 4708 4806 -1340 1003 310 117 79 chr4 6459130 6460017 -177828645 - HERV16 LTR ERVL -3555 1441 748 2153 139 12 18 chr4 6460345 6460684 -177827978 + MER1B DNA MER1_type 1 337 0 383 162 0 15 chr4 6460752 6460820 -177827842 - MLT1A2 LTR MaLR 0 374 308 1645 112 75 0 chr4 6460820 6461061 -177827601 + AluSx SINE Alu 1 259 -53 1491 207 25 19 chr4 6461095 6461409 -177827253 - MLT1A2 LTR MaLR -58 316 1 471 348 65 0 chr4 6461411 6461612 -177827050 - HERV16 LTR ERVL -4761 235 22 431 250 47 8 chr4 6461619 6461747 -177826915 + MLT1A1 LTR MaLR 229 361 -4 1341 179 82 15 chr4 6462199 6462316 -177826346 + AluJo SINE Alu 1 109 -203 480 18 0 0 chr4 6462316 6462373 -177826289 + (CA)n Simple_repeat Simple_repeat 2 58 0 1341 179 82 15 chr4 6462373 6462523 -177826139 + AluJo SINE Alu 109 286 -26 779 172 208 37 chr4 6462671 6462902 -177825760 + MLT2B2 LTR ERVL 174 493 -22 392 307 114 6 chr4 6463148 6463314 -177825348 - MIR SINE MIR -75 187 4 348 321 84 11 chr4 6463969 6464159 -177824503 - MIR3 SINE MIR -2 206 3 739 298 69 40 chr4 6464647 6465094 -177823568 - LTR33 LTR ERVL 0 521 62 423 231 111 34 chr4 6465138 6465356 -177823306 + Charlie8 DNA MER1_type 83 1397 -1020 180 234 160 75 chr4 6465398 6465492 -177823170 - MIR SINE MIR -87 121 20 202 319 44 0 chr4 6466455 6466546 -177822116 + L2 LINE L2 3094 3188 -125 321 53 0 0 chr4 6466546 6466584 -177822078 + THE1C LTR MaLR 123 160 -215 * 550 186 105 24 chr4 6466572 6466696 -177821966 - THE1C LTR MaLR -241 134 1 6533 101 8 6 chr4 6466696 6467577 -177821085 - THE1C-int LTR MaLR 0 1580 698 2148 72 7 17 chr4 6467565 6467858 -177820804 - THE1C-int LTR MaLR -1290 290 1 * 2056 146 64 14 chr4 6467858 6468215 -177820447 - THE1C LTR MaLR 0 375 1 524 282 15 8 chr4 6468217 6468348 -177820314 + L2 LINE L2 3182 3313 0 219 358 123 12 chr4 6470650 6470812 -177817850 + MIR SINE MIR 79 258 -4 1088 117 0 134 chr4 6471103 6471326 -177817336 - 7SK RNA RNA 0 193 1 1663 140 59 0 chr4 6471973 6472244 -177816418 - AluSq SINE Alu -15 298 12 197 284 58 77 chr4 6472833 6472988 -177815674 + MIR3 SINE MIR 4 155 -53 372 308 6 38 chr4 6473485 6473642 -177815020 + MIR SINE MIR 45 191 -65 186 222 56 19 chr4 6473821 6473875 -177814787 + MIR3 SINE MIR 9 64 -144 2099 100 81 36 chr4 6473914 6474273 -177814389 + THE1C LTR MaLR 1 375 0 525 282 77 23 chr4 6474331 6474590 -177814072 - LTR16C LTR ERVL -4 487 215 197 269 39 0 chr4 6474800 6474852 -177813810 + MIR SINE MIR 209 262 0 327 235 15 91 chr4 6474871 6475003 -177813659 + MLT1L LTR MaLR 43 164 -451 5081 111 10 9 chr4 6475133 6476000 -177812662 - L1P3 LINE L1 -4549 1912 1051 5753 106 2 7 chr4 6476000 6476503 -177812159 + L1P LINE L1 1644 2143 -4003 3315 137 8 6 chr4 6476503 6477013 -177811649 + MER9 LTR ERVK 1 511 0 5753 106 2 7 chr4 6477013 6477341 -177811321 + L1P LINE L1 2143 2471 -3675 4118 141 34 23 chr4 6527430 6528127 -177760535 + MER44D DNA MER2_type 1 705 0 205 188 35 35 chr4 6528312 6528397 -177760265 + (TATAA)n Simple_repeat Simple_repeat 5 89 0 2811 78 54 29 chr4 6528430 6528838 -177759824 - L1PB2 LINE L1 -2 6149 5732 2087 174 50 21 chr4 6530107 6530486 -177758176 - MSTD LTR MaLR 0 396 7 269 282 26 0 chr4 6530541 6530619 -177758043 + MER102a DNA MER1_type 238 317 -13 222 323 50 20 chr4 6530730 6530829 -177757833 + MIR SINE MIR 52 153 -109 271 294 0 0 chr4 6530931 6530999 -177757663 + MIR SINE MIR 78 145 -63 181 200 44 111 chr4 6531138 6531228 -177757434 + L2 LINE L2 3228 3311 -2 311 346 43 21 chr4 6531442 6531596 -177757066 - L2 LINE L2 -15 3298 3138 2068 127 3 17 chr4 6531596 6531896 -177756766 + AluSx SINE Alu 1 296 -16 311 346 43 21 chr4 6531896 6531929 -177756733 - L2 LINE L2 -175 3138 3107 264 289 0 0 chr4 6531929 6532005 -177756657 - MLT1C LTR MaLR 0 467 392 786 127 11 33 chr4 6532230 6532411 -177756251 + (TTCC)n Simple_repeat Simple_repeat 2 178 0 1212 136 99 113 chr4 6532419 6532721 -177755941 - AluJo SINE Alu -1 311 14 233 247 0 55 chr4 6532879 6532952 -177755710 + GA-rich Low_complexity Low_complexity 4 72 0 403 173 0 13 chr4 6533662 6533737 -177754925 + MIR SINE MIR 79 152 -56 213 279 0 93 chr4 6533810 6533896 -177754766 + L3 LINE CR1 1411 1488 -89 758 80 0 9 chr4 6533933 6534045 -177754617 + (TTCC)n Simple_repeat Simple_repeat 2 112 0 1933 137 9 40 chr4 6534045 6534367 -177754295 - AluSx SINE Alu 0 312 1 245 111 44 0 chr4 6534503 6534548 -177754114 + C-rich Low_complexity Low_complexity 3 49 0 360 286 100 55 chr4 6535015 6535572 -177753090 - L1ME3A LINE L1 -273 5897 5286 * 421 284 5 58 chr4 6535564 6535681 -177752981 - L1ME3A LINE L1 -2029 4117 4012 2674 122 11 3 chr4 6535681 6536042 -177752620 + THE1B LTR MaLR 1 364 0 421 284 5 58 chr4 6536042 6536114 -177752548 - L1ME3A LINE L1 -2134 4012 3938 1352 251 61 10 chr4 6536119 6536526 -177752136 - L1ME3A LINE L1 -1 6169 5742 865 245 116 4 chr4 6536548 6536781 -177751881 - L1ME3A LINE L1 -517 5653 5395 830 166 0 21 chr4 6536782 6536927 -177751735 + FLAM_C SINE Alu 1 142 -1 958 192 12 75 chr4 6537055 6537101 -177751561 - MER33 DNA MER1_type -2359 226 179 2066 93 8 0 chr4 6537101 6537369 -177751293 - AluSx SINE Alu -12 300 31 958 192 12 75 chr4 6537369 6537562 -177751100 - MER33 DNA MER1_type -2406 179 2 448 265 80 15 chr4 6537570 6537951 -177750711 - L1ME LINE L1 -656 5508 5107 278 154 51 8 chr4 6537961 6538078 -177750584 + (TA)n Simple_repeat Simple_repeat 1 122 0 777 126 20 16 chr4 6538102 6538611 -177750051 + (TA)n Simple_repeat Simple_repeat 1 511 0 26 0 0 0 chr4 6538611 6538637 -177750025 + AT_rich Low_complexity Low_complexity 1 26 0 354 304 66 28 chr4 6538695 6538876 -177749786 + L2 LINE L2 2005 2192 -1122 433 242 160 45 chr4 6538899 6539168 -177749494 - LTR50 LTR ERVL 0 795 496 645 191 77 55 chr4 6539275 6539458 -177749204 - LTR41 LTR ERVL -586 187 1 2175 125 0 0 chr4 6539485 6539780 -177748882 - AluSx SINE Alu -17 295 1 536 362 119 21 chr4 6539781 6540361 -177748301 + L2 LINE L2 2229 2865 -449 255 284 91 26 chr4 6540477 6540613 -177748049 + L2 LINE L2 2871 3009 -263 2367 120 38 44 chr4 6540747 6541113 -177747549 - THE1B LTR MaLR 0 364 1 220 362 0 19 chr4 6541113 6541218 -177747444 + L2 LINE L2 3136 3238 -34 266 31 0 0 chr4 6541396 6541428 -177747234 - L1PB3 LINE L1 -2 6152 6121 674 92 0 0 chr4 6541428 6541515 -177747147 - MSTA LTR MaLR 0 428 342 2140 125 117 6 chr4 6541615 6541975 -177746687 - MSTA LTR MaLR -28 400 1 356 23 0 0 chr4 6541995 6542039 -177746623 + MADE1 DNA Mariner 36 79 -1 290 54 0 143 chr4 6542049 6542105 -177746557 - MADE1 DNA Mariner -32 48 1 1599 149 32 0 chr4 6542105 6542354 -177746308 - L1PB3 LINE L1 -58 6096 5840 221 312 37 18 chr4 6542356 6542465 -177746197 - MIR SINE MIR -73 189 79 580 203 63 76 chr4 6542524 6542761 -177745901 + MER113 DNA MER1_type? 6 239 -282 546 191 8 63 chr4 6542782 6542908 -177745754 - L1MA9 LINE L1 -115 6197 6079 842 93 0 0 chr4 6543101 6543209 -177745453 - AluY SINE Alu -5 306 199 1091 213 30 0 chr4 6543421 6543656 -177745006 + MIR SINE MIR 6 247 -15 572 296 47 24 chr4 6543694 6543907 -177744755 + MIR SINE MIR 16 233 -29 589 258 76 15 chr4 6544418 6544616 -177744046 + MLT1B LTR MaLR 6 215 -175 * 1192 275 120 14 chr4 6544589 6545022 -177743640 - MER45B DNA AcHobo -560 480 2 559 242 136 70 chr4 6545369 6545988 -177742674 + L2 LINE L2 2545 3206 -107 2326 131 18 15 chr4 6545994 6546330 -177742332 + MER1B DNA MER1_type 1 337 0 407 320 8 8 chr4 6546354 6546476 -177742186 + L2 LINE L2 3178 3299 -14 210 71 0 0 chr4 6546477 6546505 -177742157 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 1014 274 123 33 chr4 6546518 6546942 -177741720 - MLT1K LTR MaLR -114 474 13 240 349 151 18 chr4 6546994 6547160 -177741502 + L2 LINE L2 3083 3270 -2 769 259 61 64 chr4 6548246 6548559 -177740103 + MLT1I LTR MaLR 10 321 -88 1268 164 33 109 chr4 6548582 6548751 -177739911 - AluJb SINE Alu 0 312 132 241 26 26 26 chr4 6548751 6548790 -177739872 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1268 164 33 109 chr4 6548790 6548804 -177739858 - AluJb SINE Alu -180 132 119 2107 95 0 0 chr4 6548804 6549077 -177739585 - AluSx SINE Alu -39 273 1 1268 164 33 109 chr4 6549077 6549221 -177739441 - AluJb SINE Alu -193 119 9 448 171 13 0 chr4 6549222 6549298 -177739364 + MLT1I LTR MaLR 333 409 0 971 255 92 84 chr4 6549312 6550006 -177738656 - L1MEc LINE L1 -2070 4145 3439 2145 112 3 0 chr4 6550006 6550292 -177738370 - AluSp SINE Alu -26 287 1 971 255 92 84 chr4 6550292 6550618 -177738044 - L1MEc LINE L1 -2776 3439 3117 636 314 87 22 chr4 6550660 6551523 -177737139 - L1MEc LINE L1 -4639 1757 839 303 293 121 57 chr4 6551948 6552105 -177736557 - L1MEc LINE L1 -5901 304 138 236 345 85 20 chr4 6552152 6552352 -177736310 + L2 LINE L2 1707 1919 -1395 1145 83 0 13 chr4 6552526 6552703 -177735959 - AluY SINE Alu 0 306 132 810 161 8 0 chr4 6552803 6552933 -177735729 - AluJo SINE Alu -177 135 5 374 259 46 8 chr4 6552938 6553069 -177735593 - MER103 DNA DNA -24 142 7 258 269 45 0 chr4 6553861 6553928 -177734734 - L2 LINE L2 -3 3310 3241 610 313 28 14 chr4 6553956 6554167 -177734495 - MIR SINE MIR -7 255 42 2219 74 0 14 chr4 6555191 6555488 -177733174 + AluY SINE Alu 1 293 -18 494 310 105 0 chr4 6555770 6555941 -177732721 + MIR SINE MIR 2 190 -72 383 223 106 11 chr4 6556144 6556238 -177732424 + L2 LINE L2 3210 3312 -1 554 306 19 0 chr4 6556318 6556478 -177732184 + MIR SINE MIR 96 258 -4 379 273 11 0 chr4 6556759 6556847 -177731815 - L2 LINE L2 0 3272 3184 4998 159 39 5 chr4 6556847 6557703 -177730959 + L1MC1 LINE L1 5415 6299 -34 1597 72 0 10 chr4 6557718 6557925 -177730737 - L1PA6 LINE L1 -1 6153 5949 375 289 90 74 chr4 6557959 6558336 -177730326 - L2 LINE L2 -78 3235 2853 448 200 90 44 chr4 6558959 6559111 -177729551 - MER63A DNA MER1_type 0 210 50 295 146 0 0 chr4 6559162 6559203 -177729459 - MER63A DNA MER1_type -169 41 1 389 338 46 0 chr4 6559204 6559355 -177729307 + MIR SINE MIR 53 210 -52 211 280 187 9 chr4 6560238 6560345 -177728317 + L2 LINE L2 3121 3246 -26 205 384 59 27 chr4 6560377 6560596 -177728066 - L2 LINE L2 -53 3219 2994 * 453 309 8 8 chr4 6560567 6560690 -177727972 + L2 LINE L2 3150 3272 0 390 325 69 46 chr4 6560695 6561094 -177727568 - L2 LINE L2 -262 3010 2595 1809 171 53 13 chr4 6561659 6562039 -177726623 - L1MA9 LINE L1 0 6312 5918 325 310 8 23 chr4 6562445 6562574 -177726088 - MIR SINE MIR -62 146 20 349 268 109 91 chr4 6563128 6563393 -177725269 + L2 LINE L2 3036 3305 -8 196 291 89 0 chr4 6563476 6563555 -177725107 + L2 LINE L2 3137 3222 -50 2529 125 48 17 chr4 6563721 6564136 -177724526 - MSTA LTR MaLR 0 428 1 637 144 0 65 chr4 6564146 6564285 -177724377 - FRAM SINE Alu -4 172 43 1948 122 7 0 chr4 6564499 6564785 -177723877 + AluSx SINE Alu 1 288 -24 910 284 107 3 chr4 6564882 6565237 -177723425 + MER113 DNA MER1_type? 20 411 -110 238 182 0 23 chr4 6565371 6565415 -177723247 + CT-rich Low_complexity Low_complexity 3 45 0 225 0 0 0 chr4 6565423 6565448 -177723214 + (T)n Simple_repeat Simple_repeat 1 25 0 2061 106 0 0 chr4 6565529 6565853 -177722809 + AluSg SINE Alu 1 324 0 228 217 51 0 chr4 6566173 6566240 -177722422 - Charlie8 DNA MER1_type -2 2415 1345 254 328 38 15 chr4 6566531 6566662 -177722000 + L2 LINE L2 3075 3208 -105 320 263 41 36 chr4 6566819 6567013 -177721649 - L1M4 LINE L1 -2164 3982 3788 256 283 157 18 chr4 6567274 6567440 -177721222 - L1ME LINE L1 -438 5683 5495 283 149 15 60 chr4 6568108 6568146 -177720516 - Tigger3(Golem) DNA MER2_type -138 2900 2865 2830 3 0 0 chr4 6568146 6568458 -177720204 + AluYb8 SINE Alu 1 312 -6 283 149 15 60 chr4 6568458 6568486 -177720176 - Tigger3(Golem) DNA MER2_type -173 2865 2837 447 228 33 0 chr4 6569061 6569153 -177719509 - MLT1J LTR MaLR -321 190 96 273 284 0 14 chr4 6569165 6569239 -177719423 + L2 LINE L2 3200 3272 0 244 309 128 0 chr4 6569330 6569424 -177719238 - MIR SINE MIR -3 259 154 1570 266 93 70 chr4 6569476 6569949 -177718713 + L2 LINE L2 2061 2522 -791 1578 181 3 19 chr4 6569949 6570259 -177718403 + AluJb SINE Alu 5 309 -3 1570 266 93 70 chr4 6570259 6570770 -177717892 + L2 LINE L2 2522 3066 -247 3510 111 14 2 chr4 6570770 6571277 -177717385 - L1PA8A LINE L1 -1530 4616 4104 6487 88 2 2 chr4 6571290 6572799 -177715863 + L1PA8A LINE L1 4596 6130 -1 237 310 14 0 chr4 6572900 6572971 -177715691 - L2 LINE L2 0 3313 3242 768 198 213 55 chr4 6573095 6573443 -177715219 + MLT1C LTR MaLR 7 409 -58 2032 114 19 13 chr4 6573443 6573618 -177715044 - AluSx SINE Alu -3 309 130 2058 113 17 3 chr4 6573618 6573918 -177714744 - AluSq SINE Alu -9 304 1 2032 114 19 13 chr4 6573918 6574049 -177714613 - AluSx SINE Alu -182 130 1 462 256 125 30 chr4 6574054 6574222 -177714440 + MIR SINE MIR 48 231 -31 1144 97 0 0 chr4 6574510 6574664 -177713998 - AluSg/x SINE Alu -4 306 153 2109 85 64 5 chr4 6574675 6575036 -177713626 - LTR7 LTR ERV1 0 450 25 1037 139 6 6 chr4 6575036 6575208 -177713454 - AluSq SINE Alu -141 172 1 490 264 35 39 chr4 6575221 6575405 -177713257 - MIR SINE MIR -72 136 3 419 229 50 57 chr4 6575503 6575643 -177713019 - MIR SINE MIR -10 252 114 252 0 0 0 chr4 6575733 6575761 -177712901 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 270 193 72 48 chr4 6576244 6576327 -177712335 + MIR3 SINE MIR 87 171 -37 204 330 0 10 chr4 6576727 6576824 -177711838 + CT-rich Low_complexity Low_complexity 1 96 0 392 243 14 62 chr4 6577910 6578054 -177710608 + MIR SINE MIR 80 216 -46 195 293 98 9 chr4 6578158 6578346 -177710316 - MIR SINE MIR -2 260 12 2116 79 14 0 chr4 6579022 6579337 -177709325 + AluSq SINE Alu 1 319 0 350 330 75 74 chr4 6579463 6580017 -177708645 - L2 LINE L2 0 3272 2715 412 209 9 43 chr4 6580240 6580355 -177708307 + HsTC2 DNA Tc2 1780 1890 -8 653 264 22 33 chr4 6580827 6581009 -177707653 - MIR SINE MIR -48 214 35 185 194 0 0 chr4 6581092 6581128 -177707534 - L2 LINE L2 -16 3256 3221 438 265 75 90 chr4 6581200 6581532 -177707130 - MLT1J LTR MaLR -75 436 110 543 232 113 33 chr4 6581564 6581715 -177706947 + MER5A DNA MER1_type 1 163 -26 446 255 47 0 chr4 6582139 6582245 -177706417 + MER81 DNA DNA 2 112 -2 401 277 37 28 chr4 6583154 6583351 -177705311 - MIR SINE MIR -6 256 18 269 295 13 26 chr4 6584068 6584146 -177704516 - L2 LINE L2 0 3272 3196 455 294 88 44 chr4 6584152 6584424 -177704238 - L2 LINE L2 0 3313 3030 374 275 181 28 chr4 6584503 6584856 -177703806 - L2 LINE L2 -462 2852 2446 191 188 0 0 chr4 6586141 6586173 -177702489 - MIR SINE MIR -107 155 124 776 153 11 17 chr4 6586312 6586489 -177702173 + GA-rich Low_complexity Low_complexity 3 178 0 290 203 16 0 chr4 6586673 6586737 -177701925 + MIR SINE MIR 61 125 -137 402 268 109 55 chr4 6586737 6586957 -177701705 + Charlie8 DNA MER1_type 1 232 -2185 226 383 9 9 chr4 6587106 6587221 -177701441 + L2 LINE L2 2946 3060 -212 185 150 0 25 chr4 6587328 6587368 -177701294 + (CA)n Simple_repeat Simple_repeat 2 40 0 1753 179 152 29 chr4 6587437 6587885 -177700777 + MLT1D LTR MaLR 1 503 -2 353 282 52 69 chr4 6588086 6588260 -177700402 + MIR SINE MIR 20 190 -72 1040 270 72 17 chr4 6588570 6589015 -177699647 + MLT1H LTR MaLR 28 549 0 587 278 139 10 chr4 6589714 6589923 -177698739 + MIR SINE MIR 20 255 -7 22 0 0 0 chr4 6590471 6590493 -177698169 + AT_rich Low_complexity Low_complexity 1 22 0 269 224 37 82 chr4 6590703 6590837 -177697825 - L1ME4a LINE L1 -21 6100 5973 241 349 9 0 chr4 6591052 6591158 -177697504 + L2 LINE L2 3206 3312 -1 1890 150 0 0 chr4 6591181 6591468 -177697194 - AluSx SINE Alu -25 287 1 285 318 56 24 chr4 6591765 6591891 -177696771 + L2 LINE L2 3142 3271 -1 1331 126 0 11 chr4 6591950 6592141 -177696521 - Tigger2 DNA MER2_type -1 2717 2529 1562 181 0 7 chr4 6592149 6592425 -177696237 - AluJo SINE Alu -33 279 6 3414 128 65 5 chr4 6592428 6592982 -177695680 - Tigger2 DNA MER2_type -1572 1146 560 821 206 16 27 chr4 6593098 6593282 -177695380 + MLT1C LTR MaLR 286 467 0 286 313 52 10 chr4 6593312 6593408 -177695254 - MIR3 SINE MIR 0 208 109 206 289 52 41 chr4 6593823 6593920 -177694742 - L3 LINE CR1 -1471 106 9 290 256 35 0 chr4 6594111 6594197 -177694465 + MLT1K LTR MaLR 153 241 -347 1814 234 48 87 chr4 6594386 6595009 -177693653 + L1ME3A LINE L1 5546 6144 -26 313 318 129 30 chr4 6595036 6595269 -177693393 + L3 LINE CR1 1191 1446 -131 711 299 45 9 chr4 6595872 6596096 -177692566 - MIR SINE MIR -29 233 2 297 311 112 13 chr4 6596144 6596295 -177692367 - MIR SINE MIR -52 156 14 273 311 46 48 chr4 6596541 6596707 -177691955 + MIR SINE MIR 49 216 -46 458 202 67 29 chr4 6596843 6596947 -177691715 - L2 LINE L2 -8 3305 3198 342 269 175 29 chr4 6597004 6597175 -177691487 - MIR SINE MIR -14 248 53 213 225 14 28 chr4 6597302 6597373 -177691289 + (CAGGT)n Simple_repeat Simple_repeat 5 74 0 977 275 116 40 chr4 6598384 6598644 -177690018 - L2 LINE L2 0 3313 3074 1082 164 19 14 chr4 6598644 6598851 -177689811 - MER3 DNA MER1_type 0 209 2 977 275 116 40 chr4 6598851 6599331 -177689331 - L2 LINE L2 -239 3074 2516 373 269 71 39 chr4 6599333 6599515 -177689147 - MLT1L LTR MaLR -90 525 338 2248 178 17 19 chr4 6600321 6600691 -177687971 + MLT2D LTR ERVL 1 371 -43 417 81 0 0 chr4 6600691 6600753 -177687909 + (TCTG)n Simple_repeat Simple_repeat 3 64 0 2248 178 17 19 chr4 6600753 6600797 -177687865 + MLT2D LTR ERVL 371 414 0 407 288 72 0 chr4 6601838 6601977 -177686685 + MIR SINE MIR 111 259 -3 459 52 0 0 chr4 6602378 6602436 -177686226 + (TCCA)n Simple_repeat Simple_repeat 1 58 0 362 329 56 31 chr4 6602439 6602600 -177686062 - L2 LINE L2 -22 3250 3086 781 223 53 75 chr4 6602959 6603278 -177685384 - L1ME2 LINE L1 -10 6390 6079 676 220 81 52 chr4 6603279 6603661 -177685001 - L1ME2 LINE L1 -812 5570 5178 1660 209 37 92 chr4 6603727 6604301 -177684361 - MLT2B3 LTR ERVL -12 542 1 3859 253 51 30 chr4 6604302 6605905 -177682757 - L1ME2 LINE L1 -1266 5116 3480 1973 251 58 9 chr4 6605912 6606685 -177681977 - L1ME2 LINE L1 -3065 3317 2507 484 270 25 15 chr4 6606745 6606945 -177681717 - L1ME2 LINE L1 -3804 2578 2377 775 308 25 46 chr4 6607086 6607855 -177680807 - L1ME2 LINE L1 -4243 2320 1416 1010 284 48 13 chr4 6607875 6608351 -177680311 - L1ME2 LINE L1 -5231 1141 649 271 258 2 28 chr4 6609389 6609467 -177679195 + MIR SINE MIR 78 154 -54 286 203 0 0 chr4 6609987 6610046 -177678616 + MER96 DNA MER1_type? 117 175 0 729 318 59 3 chr4 6610063 6610384 -177678278 - LTR16C LTR ERVL -9 482 144 225 222 69 42 chr4 6610643 6610715 -177677947 - MIR SINE MIR -81 181 108 205 347 59 59 chr4 6610883 6611102 -177677560 + MIR SINE MIR 9 227 -35 743 269 43 18 chr4 6611138 6611813 -177676849 + L1M4 LINE L1 3921 4808 -1338 1995 124 3 10 chr4 6611869 6612175 -177676487 - AluSq SINE Alu -9 304 1 213 344 131 0 chr4 6612370 6612492 -177676170 + L2 LINE L2 3132 3269 -3 225 333 82 41 chr4 6612582 6612801 -177675861 + L2 LINE L2 2750 2977 -337 458 316 80 30 chr4 6613926 6614163 -177674499 + L2 LINE L2 2243 2491 -823 1218 275 92 49 chr4 6614318 6615893 -177672769 - L1MEc LINE L1 -3372 2708 1001 225 94 0 0 chr4 6615893 6615925 -177672737 + (TG)n Simple_repeat Simple_repeat 1 32 0 1218 275 92 49 chr4 6615925 6616292 -177672370 - L1MEc LINE L1 -5079 1001 651 252 235 0 0 chr4 6616398 6616466 -177672196 - L1MEc LINE L1 -5162 908 841 273 273 0 122 chr4 6616640 6616812 -177671850 - L1MEc LINE L1 -5551 519 369 353 217 11 11 chr4 6617603 6617695 -177670967 - MLT1G LTR MaLR 0 590 499 373 295 30 42 chr4 6617995 6618232 -177670430 - L1ME LINE L1 -298 5823 5590 327 323 24 8 chr4 6618775 6618899 -177669763 + L2 LINE L2 3187 3312 -1 231 323 32 0 chr4 6619141 6619234 -177669428 - MER117 DNA MER1_type -87 110 15 927 286 78 30 chr4 6619552 6620014 -177668648 - MLT1L LTR MaLR -9 606 123 431 304 46 11 chr4 6620858 6621121 -177667541 - L1ME LINE L1 -301 5820 5549 1259 180 0 86 chr4 6621428 6621755 -177666907 - L1MA9 LINE L1 -277 6035 5737 * 3300 250 62 34 chr4 6621754 6623020 -177665642 - L1M2 LINE L1 -4469 1742 456 609 278 140 36 chr4 6623205 6623683 -177664979 - L1ME4a LINE L1 -1 6120 5593 391 289 71 47 chr4 6623868 6624079 -177664583 + MIR SINE MIR 35 250 -12 1973 149 3 3 chr4 6624251 6624547 -177664115 - AluSx SINE Alu -16 296 1 470 260 133 17 chr4 6624827 6625008 -177663654 + MIR SINE MIR 47 248 -14 205 176 0 0 chr4 6625108 6625142 -177663520 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 253 331 99 8 chr4 6625359 6625480 -177663182 + L2 LINE L2 3171 3302 -11 375 273 123 68 chr4 6625668 6625961 -177662701 + LTR16A1 LTR ERVL 147 455 -2 276 300 0 0 chr4 6626102 6626182 -177662480 - MIR SINE MIR -70 138 59 225 19 0 113 chr4 6626200 6626253 -177662409 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 2249 126 0 0 chr4 6626259 6626568 -177662094 - AluSg SINE Alu 0 310 2 2246 181 22 84 chr4 6626673 6627220 -177661442 + MLT2B2 LTR ERVL 3 515 0 261 0 0 0 chr4 6627505 6627534 -177661128 + (TG)n Simple_repeat Simple_repeat 1 29 0 640 290 6 0 chr4 6628801 6628977 -177659685 + MER58A DNA MER1_type 3 179 -45 2488 113 5 24 chr4 6629022 6629393 -177659269 + THE1B LTR MaLR 1 364 0 597 178 0 52 chr4 6629794 6629929 -177658733 - MLT1I LTR MaLR -2 407 280 303 325 180 0 chr4 6630228 6630422 -177658240 - MIR SINE MIR -13 249 21 1836 193 0 7 chr4 6631020 6631325 -177657337 - AluJo SINE Alu -9 303 1 336 161 0 0 chr4 6632005 6632067 -177656595 + CT-rich Low_complexity Low_complexity 6 67 0 243 313 87 35 chr4 6632365 6632480 -177656182 + L2 LINE L2 3127 3247 -25 417 224 9 19 chr4 6632599 6632706 -177655956 - AluJb SINE Alu -14 298 193 372 252 57 32 chr4 6632819 6632942 -177655720 + L2 LINE L2 2622 2747 -567 409 281 104 48 chr4 6633330 6633584 -177655078 - L1M4 LINE L1 -918 5228 4990 2237 115 131 11 chr4 6633584 6633966 -177654696 + MSTA LTR MaLR 1 428 0 409 281 104 48 chr4 6633966 6634174 -177654488 - L1M4 LINE L1 -1156 4990 4740 335 298 63 99 chr4 6635287 6635589 -177653073 - L3 LINE CR1 -2 1575 1285 1012 191 5 11 chr4 6635622 6635811 -177652851 - MER5A DNA MER1_type -1 188 1 330 300 67 110 chr4 6635840 6636257 -177652405 - L2 LINE L2 -39 3233 2835 470 274 20 13 chr4 6637648 6637801 -177650861 - MLT1I LTR MaLR -399 156 3 243 250 0 0 chr4 6637803 6637855 -177650807 - L2 LINE L2 -599 2715 2664 287 348 129 0 chr4 6637970 6638171 -177650491 - L2 LINE L2 -608 2706 2480 201 292 135 0 chr4 6639209 6639298 -177649364 - MIR SINE MIR -141 121 21 483 339 81 30 chr4 6639923 6640221 -177648441 - L2 LINE L2 0 3272 2960 359 331 140 29 chr4 6640257 6640535 -177648127 - L2 LINE L2 -450 2864 2556 923 212 33 113 chr4 6641298 6641340 -177647322 + MLT1A1 LTR MaLR 1 45 -320 1724 111 0 0 chr4 6641340 6641565 -177647097 + AluSc SINE Alu 77 301 -8 923 212 33 113 chr4 6641565 6641919 -177646743 + MLT1A1 LTR MaLR 45 365 0 6880 209 65 35 chr4 6641919 6643220 -177645442 + MLT1A1-int LTR MaLR 1 1365 -370 2480 69 0 13 chr4 6643220 6643524 -177645138 + AluY SINE Alu 1 300 -11 6880 209 65 35 chr4 6643524 6643907 -177644755 + MLT1A1-int LTR MaLR 1365 1735 0 254 297 79 10 chr4 6644518 6644619 -177644043 + MIR SINE MIR 150 257 -5 435 228 24 0 chr4 6644702 6644825 -177643837 - Charlie1 DNA MER1_type 0 2761 2636 1974 115 44 0 chr4 6644825 6645122 -177643540 + AluSx SINE Alu 1 309 0 349 186 0 0 chr4 6645176 6645235 -177643427 + MER44D DNA MER2_type 2 60 -645 2481 196 24 29 chr4 6646037 6646589 -177642073 + MER44D DNA MER2_type 2 605 0 3756 275 119 22 chr4 6646596 6648114 -177640548 - Charlie1 DNA MER1_type -180 2581 917 1117 114 14 55 chr4 6648122 6648231 -177640431 - Tigger1 DNA MER2_type -8 2410 2313 2121 125 3 0 chr4 6648231 6648527 -177640135 + AluSq SINE Alu 1 297 -16 1117 114 14 55 chr4 6648527 6648637 -177640025 - Tigger1 DNA MER2_type -105 2313 2200 584 211 0 32 chr4 6648633 6648756 -177639906 - Tigger1 DNA MER2_type -2279 139 21 * 1801 212 76 58 chr4 6648753 6648846 -177639816 - Charlie1 DNA MER1_type -1832 929 839 616 157 20 0 chr4 6648846 6648948 -177639714 + L1PB4 LINE L1 6041 6144 -12 1801 212 76 58 chr4 6648948 6649529 -177639133 - Charlie1 DNA MER1_type -1922 839 243 831 151 0 22 chr4 6649529 6649668 -177638994 - AluSp/q SINE Alu -4 309 174 724 229 82 26 chr4 6649668 6649724 -177638938 - Charlie1 DNA MER1_type -2509 252 201 2317 113 3 0 chr4 6649724 6650035 -177638627 - AluSx SINE Alu 0 312 1 724 229 82 26 chr4 6650035 6650209 -177638453 - Charlie1 DNA MER1_type -2560 201 9 243 232 219 66 chr4 6650700 6650851 -177637811 + L2 LINE L2 3099 3272 0 2067 142 0 13 chr4 6650875 6651191 -177637471 + AluSx SINE Alu 1 312 0 402 273 8 0 chr4 6651523 6651644 -177637018 - L2 LINE L2 -1 3271 3150 1261 212 117 40 chr4 6651664 6652117 -177636545 - Charlie4a DNA MER1_type -20 488 1 355 285 12 12 chr4 6652411 6652576 -177636086 + L1ME4a LINE L1 5705 5869 -252 24 0 0 0 chr4 6652827 6652851 -177635811 + AT_rich Low_complexity Low_complexity 1 24 0 273 345 152 0 chr4 6653178 6653369 -177635293 + MIR SINE MIR 15 234 -28 380 185 85 85 chr4 6653389 6653519 -177635143 - MER103 DNA DNA -34 132 3 3251 240 83 20 chr4 6653661 6654489 -177634173 + L1MB7 LINE L1 -254 625 -5655 3149 233 66 17 chr4 6654476 6656320 -177632342 + L1MB7 LINE L1 1177 3215 -3167 * 1222 91 22 4 chr4 6656317 6656589 -177632073 + L1MA2 LINE L1 5909 6224 -80 * 1523 116 13 0 chr4 6656589 6656822 -177631840 + L1MA2 LINE L1 6069 6304 0 2243 252 18 31 chr4 6656829 6657270 -177631392 + L1MB7 LINE L1 3199 3629 -2753 6307 71 8 21 chr4 6657270 6658431 -177630231 - L1PA8A LINE L1 0 6131 5007 2311 86 41 0 chr4 6658431 6658723 -177629939 - AluY SINE Alu -7 304 1 6307 71 8 21 chr4 6658723 6658936 -177629726 - L1PA8A LINE L1 -1124 5007 4793 2243 252 18 31 chr4 6658936 6659213 -177629449 + L1MB7 LINE L1 3629 3908 -2474 3735 184 47 34 chr4 6659219 6660268 -177628394 + L1MB7 LINE L1 5313 6369 -51 1353 163 50 48 chr4 6660268 6660309 -177628353 - MSTA LTR MaLR 0 364 325 2309 99 0 10 chr4 6660309 6660621 -177628041 + AluSx SINE Alu 1 309 -3 1353 163 50 48 chr4 6660621 6660951 -177627711 - MSTA LTR MaLR -39 325 1 2587 142 36 11 chr4 6661057 6661502 -177627160 + Tigger2 DNA MER2_type 3 458 -2260 881 19 9 0 chr4 6661502 6661608 -177627054 + L1PA4 LINE L1 5872 5978 -177 315 102 0 85 chr4 6661710 6661769 -177626893 + Alu SINE Alu 242 295 -6 969 210 210 4 chr4 6661802 6662074 -177626588 - MLT1D LTR MaLR 0 505 178 1152 150 117 0 chr4 6662074 6662287 -177626375 - L1PA15 LINE L1 -11 6154 5917 * 1708 117 29 4 chr4 6662267 6662541 -177626121 + L1PA15 LINE L1 5624 5904 -261 753 214 60 11 chr4 6662541 6662723 -177625939 - MLT1D LTR MaLR -314 191 1 672 315 25 36 chr4 6662745 6663137 -177625525 - L2 LINE L2 -222 3091 2703 960 261 54 51 chr4 6664125 6664682 -177623980 + L2 LINE L2 2739 3308 -5 210 232 54 0 chr4 6664816 6664872 -177623790 + MIR SINE MIR 129 187 -75 21 0 0 0 chr4 6665318 6665339 -177623323 + AT_rich Low_complexity Low_complexity 1 21 0 1438 230 68 20 chr4 6666275 6666464 -177622198 - MLT1C LTR MaLR 0 467 289 2796 94 3 0 chr4 6666464 6666827 -177621835 - THE1B LTR MaLR 0 364 1 1438 230 68 20 chr4 6666827 6667033 -177621629 - MLT1C LTR MaLR -178 289 53 211 304 0 0 chr4 6668241 6668297 -177620365 + GA-rich Low_complexity Low_complexity 2 57 0 848 279 66 0 chr4 6668344 6668616 -177620046 + L1M4 LINE L1 4671 4960 -1186 1483 246 46 7 chr4 6669213 6669646 -177619016 - MLT1E2 LTR MaLR 0 626 138 191 235 0 29 chr4 6669824 6669892 -177618770 + (CATA)n Simple_repeat Simple_repeat 1 66 0 254 228 0 76 chr4 6670553 6670645 -177618017 + MIR SINE MIR 164 248 -14 183 80 0 0 chr4 6670696 6670721 -177617941 + (TGG)n Simple_repeat Simple_repeat 1 25 0 2086 170 18 5 chr4 6670730 6671113 -177617549 + MLT1B LTR MaLR 1 388 -2 879 189 0 8 chr4 6671867 6672132 -177616530 + (TGAG)n Simple_repeat Simple_repeat 1 262 0 858 175 0 0 chr4 6672140 6672317 -177616345 + (TGAA)n Simple_repeat Simple_repeat 3 179 0 759 189 0 0 chr4 6672323 6672539 -177616123 + (TGAG)n Simple_repeat Simple_repeat 1 216 0 427 278 67 51 chr4 6672941 6673254 -177615408 + L2 LINE L2 2940 3257 -56 284 295 11 11 chr4 6673263 6673358 -177615304 + (CATATA)n Simple_repeat Simple_repeat 5 99 0 2007 106 81 34 chr4 6673372 6673729 -177614933 + THE1C LTR MaLR 2 375 0 280 199 18 41 chr4 6673770 6673941 -177614721 + (CATATA)n Simple_repeat Simple_repeat 2 168 0 229 220 0 0 chr4 6673949 6673999 -177614663 - L1MC4 LINE L1 -1341 6701 6652 290 209 18 45 chr4 6674034 6674166 -177614496 + (CATATA)n Simple_repeat Simple_repeat 1 128 0 189 0 0 0 chr4 6675137 6675158 -177613504 + (A)n Simple_repeat Simple_repeat 1 21 0 448 270 101 64 chr4 6675163 6675459 -177613203 - L2 LINE L2 -88 3225 2919 223 218 55 0 chr4 6675489 6675544 -177613118 + L2 LINE L2 3201 3258 -14 229 234 172 0 chr4 6675622 6675686 -177612976 + MIR SINE MIR 48 122 -140 2128 151 29 0 chr4 6676415 6676793 -177611869 - MLT1B LTR MaLR -1 389 1 283 169 0 34 chr4 6677241 6677300 -177611362 - MLT2D LTR ERVL 0 520 464 229 150 0 0 chr4 6677279 6677319 -177611343 + LTR66 LTR ERVL 396 435 -175 * 320 253 38 0 chr4 6677320 6677399 -177611263 + L1MC4 LINE L1 6613 6694 -1348 342 242 0 42 chr4 6677403 6677498 -177611164 + L1MC4 LINE L1 6613 6703 -1339 315 269 0 21 chr4 6677501 6677594 -177611068 + L1MC4 LINE L1 6613 6703 -1339 216 185 0 0 chr4 6677596 6677650 -177611012 + (TATATG)n Simple_repeat Simple_repeat 6 59 0 1292 235 34 6 chr4 6677682 6678005 -177610657 - MLT2D LTR ERVL -82 332 1 277 266 0 0 chr4 6678145 6678209 -177610453 - MIR SINE MIR -80 182 119 416 305 134 21 chr4 6678482 6678810 -177609852 - L2 LINE L2 0 3313 2949 222 313 16 0 chr4 6678954 6679018 -177609644 + L2 LINE L2 3203 3267 -5 367 269 60 15 chr4 6679129 6679263 -177609399 - MLT1L LTR MaLR 0 615 476 262 252 33 105 chr4 6679253 6679461 -177609201 - MLT1J LTR MaLR -185 391 212 * 387 0 0 0 chr4 6681376 6681419 -177607243 + (TG)n Simple_repeat Simple_repeat 2 44 0 1406 221 30 29 chr4 6681949 6682324 -177606338 - MLT1C LTR MaLR -22 604 69 692 251 16 5 chr4 6682324 6682511 -177606151 - MLT1A2 LTR MaLR 0 374 186 251 227 120 0 chr4 6682524 6682599 -177606063 - MIR SINE MIR -129 133 50 263 270 81 18 chr4 6682794 6682905 -177605757 - MIR3 SINE MIR -76 132 15 254 173 0 19 chr4 6684145 6684197 -177604465 + MIR SINE MIR 106 156 -106 1536 244 73 5 chr4 6684384 6684794 -177603868 + MLT1C LTR MaLR 21 458 -9 276 304 144 31 chr4 6685222 6685416 -177603246 + MIR SINE MIR 31 246 -16 936 288 104 18 chr4 6685474 6685926 -177602736 - LTR16C LTR ERVL 0 491 1 301 303 42 48 chr4 6685944 6686109 -177602553 + L2 LINE L2 3109 3272 0 225 244 0 0 chr4 6687266 6687311 -177601351 + L2 LINE L2 3213 3257 -15 448 259 85 80 chr4 6687785 6688183 -177600479 - L1ME4a LINE L1 -45 6076 5677 43999 45 3 0 chr4 6688306 6694433 -177594229 - L1PA4 LINE L1 0 6155 15 2229 141 0 0 chr4 6694436 6694741 -177593921 - AluSq SINE Alu -8 305 1 255 241 45 54 chr4 6694913 6695025 -177593637 + MIR SINE MIR 81 191 -71 2100 144 32 29 chr4 6695098 6695472 -177593190 - THE1C LTR MaLR 0 375 1 10256 126 37 3 chr4 6695472 6697000 -177591662 - THE1C-int LTR MaLR 0 1580 1 2178 123 24 39 chr4 6697000 6697381 -177591281 - THE1C LTR MaLR 0 375 1 1110 123 10 62 chr4 6697525 6697658 -177591004 - Tigger1 DNA MER2_type -1236 1182 1061 2256 105 3 13 chr4 6697658 6697973 -177590689 + AluSp SINE Alu 1 312 -1 1110 123 10 62 chr4 6697973 6698034 -177590628 - Tigger1 DNA MER2_type -1357 1061 998 448 161 62 0 chr4 6698041 6698122 -177590540 - Tigger1 DNA MER2_type -2062 356 271 4937 147 6 5 chr4 6698123 6698903 -177589759 - Tigger1 DNA MER2_type -1422 996 216 388 108 82 13 chr4 6699046 6699204 -177589458 + (TAGA)n Simple_repeat Simple_repeat 4 172 0 246 279 105 0 chr4 6699286 6699372 -177589290 - MLT1K LTR MaLR -7 581 487 253 247 155 0 chr4 6699406 6699503 -177589159 - MLT1K LTR MaLR -181 407 296 267 295 29 79 chr4 6699522 6699661 -177589001 - MLT1K LTR MaLR -413 175 44 269 223 308 2 chr4 6699960 6700081 -177588581 - MIR SINE MIR -105 157 2 189 321 0 0 chr4 6700664 6700720 -177587942 + MIR SINE MIR 30 85 -177 811 258 148 27 chr4 6700724 6700907 -177587755 + MLT1A2 LTR MaLR 1 160 -214 351 0 0 0 chr4 6700907 6700946 -177587716 + (CA)n Simple_repeat Simple_repeat 2 40 0 811 258 148 27 chr4 6700946 6701092 -177587570 + MLT1A2 LTR MaLR 160 370 -4 7307 128 34 16 chr4 6701119 6702029 -177586633 - Tigger1 DNA MER2_type 0 2418 1481 2356 95 10 0 chr4 6702029 6702335 -177586327 - AluSx SINE Alu -3 309 1 7307 128 34 16 chr4 6702335 6702588 -177586074 - Tigger1 DNA MER2_type -937 1481 1234 3277 107 32 6 chr4 6702780 6703246 -177585416 + MER1A DNA MER1_type 52 529 0 529 266 101 35 chr4 6703292 6703649 -177585013 - L1MC4a LINE L1 -621 7234 6884 1159 282 112 22 chr4 6703659 6704212 -177584450 - L1ME3A LINE L1 -4 6166 5564 463 291 89 24 chr4 6704197 6704444 -177584218 - L1ME3A LINE L1 -2448 3698 3436 * 217 325 26 26 chr4 6704931 6705048 -177583614 - MIR3 SINE MIR -2 206 90 186 103 0 0 chr4 6705054 6705083 -177583579 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 6575 197 25 20 chr4 6705254 6707540 -177581122 + L1PB4 LINE L1 3861 6156 0 1350 279 78 0 chr4 6707569 6707952 -177580710 - LTR16C LTR ERVL 0 491 79 1407 235 118 30 chr4 6708010 6708483 -177580179 - MLT2B2 LTR ERVL 0 515 1 280 277 204 0 chr4 6708655 6708792 -177579870 - L2 LINE L2 0 3313 3149 557 238 47 29 chr4 6708796 6708827 -177579835 + MLT1I LTR MaLR 232 261 -148 2406 164 6 6 chr4 6708827 6709192 -177579470 + MLT1A1 LTR MaLR 1 365 0 557 238 47 29 chr4 6709192 6709332 -177579330 + MLT1I LTR MaLR 261 406 -3 535 279 99 97 chr4 6709392 6709499 -177579163 + L2 LINE L2 2723 2828 -444 2462 104 16 65 chr4 6709499 6709882 -177578780 - THE1B LTR MaLR 0 364 1 535 279 99 97 chr4 6709882 6710331 -177578331 + L2 LINE L2 2828 3272 0 280 241 71 36 chr4 6711633 6711745 -177576917 + MIR SINE MIR 74 189 -73 201 74 0 0 chr4 6711951 6711978 -177576684 + (CA)n Simple_repeat Simple_repeat 1 27 0 717 199 7 21 chr4 6712005 6712146 -177576516 + MER45 DNA AcHobo 1 139 -901 629 170 54 34 chr4 6712148 6712295 -177576367 - L1MA8 LINE L1 -14 6277 6128 4733 161 20 15 chr4 6712295 6713182 -177575480 - L1 LINE L1 -1379 4767 3876 295 259 64 59 chr4 6713201 6713421 -177575241 - L1MC/D LINE L1 -2332 5476 5256 3155 180 3 7 chr4 6713580 6714175 -177574487 - L1 LINE L1 -2249 3897 3305 443 318 74 52 chr4 6714175 6714581 -177574081 + L2 LINE L2 2876 3290 -23 690 176 6 80 chr4 6714698 6714874 -177573788 - MER106B DNA MER1_type -1 1058 896 200 347 68 32 chr4 6716521 6716711 -177571951 + L2 LINE L2 2862 3058 -214 281 266 145 24 chr4 6716910 6717034 -177571628 + MIR SINE MIR 40 178 -84 200 233 0 0 chr4 6717184 6717227 -177571435 + T-rich Low_complexity Low_complexity 1 43 0 331 316 66 15 chr4 6717660 6717796 -177570866 - MER5B DNA MER1_type -31 147 5 1873 140 90 36 chr4 6718437 6718793 -177569869 - THE1C LTR MaLR 0 375 1 3398 117 21 46 chr4 6718793 6719355 -177569307 - THE1C-int LTR MaLR 0 1580 1033 1776 163 21 0 chr4 6769355 6769638 -177519024 - AluSx SINE Alu -23 289 1 26 64 0 0 chr4 6769700 6769747 -177518915 + AT_rich Low_complexity Low_complexity 1 47 0 552 311 77 30 chr4 6769838 6770398 -177518264 - L1ME4a LINE L1 -206 5915 5330 2708 23 0 3 chr4 6770533 6770842 -177517820 - L1PA4 LINE L1 -312 5843 5536 1823 36 22 0 chr4 6770842 6771065 -177517597 + L1P LINE L1 4986 5213 -933 9497 23 17 1 chr4 6771938 6773338 -177515324 - L1P1 LINE L1 -502 5653 4234 2281 81 0 7 chr4 6773438 6773735 -177514927 - L1P2 LINE L1 -383 5771 5477 1417 94 0 0 chr4 6773737 6773918 -177514744 + L1PA5 LINE L1 5970 6150 -4 1518 119 16 67 chr4 6773918 6774171 -177514491 + MSTA LTR MaLR 189 428 0 304 264 114 21 chr4 6774491 6774631 -177514031 + MIR SINE MIR 61 213 -49 333 321 9 9 chr4 6774711 6774823 -177513839 + MIR SINE MIR 4 115 -147 5175 132 17 11 chr4 6775173 6775724 -177512938 - L1PA15 LINE L1 -2 6163 5604 2309 115 0 0 chr4 6775724 6776029 -177512633 - AluSx SINE Alu -7 305 1 5175 132 17 11 chr4 6776029 6776281 -177512381 - L1PA15 LINE L1 -561 5604 5355 1667 253 87 31 chr4 6776404 6777360 -177511302 - L1M1 LINE L1 -4148 3417 2423 1658 155 33 39 chr4 6777354 6777690 -177510972 + L1MA7 LINE L1 5780 6113 -178 * 3147 168 73 16 chr4 6777690 6778255 -177510407 + MER44D DNA MER2_type 3 599 -106 502 263 32 5 chr4 6778268 6778401 -177510261 - MER2 DNA MER2_type -87 152 8 602 164 29 10 chr4 6778409 6778513 -177510149 + MER44D DNA MER2_type 599 704 -1 874 154 51 0 chr4 6778522 6778678 -177509984 + L1MA7 LINE L1 6123 6286 -5 2778 54 0 9 chr4 6778951 6779282 -177509380 + L1PA5 LINE L1 5824 6151 -3 4351 173 23 34 chr4 6779740 6780670 -177507992 - L1P LINE L1 -829 5317 4399 440 145 12 24 chr4 6781633 6781716 -177506946 - THE1C LTR MaLR -293 82 1 278 307 79 11 chr4 6781717 6781906 -177506756 - MER113 DNA MER1_type? -318 203 2 266 148 19 0 chr4 6782833 6782887 -177505775 + GA-rich Low_complexity Low_complexity 1 55 0 1184 247 50 15 chr4 6783461 6783862 -177504800 + HAL1 LINE L1 781 1195 -1312 2154 101 0 71 chr4 6784032 6784369 -177504293 + AluSq SINE Alu 1 313 0 1236 196 57 25 chr4 6784705 6785167 -177503495 - L1MC/D LINE L1 -749 5633 5258 2863 235 81 87 chr4 6785281 6785357 -177503305 - L1MC/D LINE L1 -1085 5297 5222 2229 110 0 0 chr4 6785357 6785649 -177503013 - AluSq SINE Alu -21 292 1 2863 235 81 87 chr4 6785649 6786883 -177501779 - L1MC/D LINE L1 -1160 5222 3995 2391 68 6 3 chr4 6787141 6787452 -177501210 + AluSx SINE Alu 1 312 0 875 276 85 65 chr4 6787939 6788399 -177500263 - MLT1J LTR MaLR -42 469 1 530 227 153 0 chr4 6788692 6788842 -177499820 + MIR SINE MIR 41 213 -49 298 210 49 0 chr4 6788842 6788923 -177499739 + MIR SINE MIR 129 213 -49 298 210 49 0 chr4 6788923 6789004 -177499658 + MIR SINE MIR 129 213 -49 323 262 71 8 chr4 6789004 6789130 -177499532 + MIR SINE MIR 129 262 0 310 319 60 64 chr4 6790267 6790502 -177498160 + MIR SINE MIR 28 261 -1 4825 98 0 12 chr4 6790636 6791296 -177497366 - L1P3 LINE L1 -5804 657 6 1669 206 27 0 chr4 6791434 6791807 -177496855 - L1 LINE L1 -1112 5034 4652 5653 190 10 22 chr4 6791810 6792985 -177495677 + L1 LINE L1 3470 4630 -1516 2698 236 48 38 chr4 6792995 6793945 -177494717 - L1 LINE L1 -2166 3980 3021 466 237 95 27 chr4 6793925 6794187 -177494475 - L1MC/D LINE L1 -3961 2423 2144 * 321 177 89 48 chr4 6794212 6794336 -177494326 - L1MC4 LINE L1 0 8042 7914 * 581 307 42 3 chr4 6794319 6794625 -177494037 - L1M4 LINE L1 -947 5199 4882 3333 115 8 123 chr4 6794658 6795308 -177493354 - L1PB2 LINE L1 -7 6144 5570 5554 217 9 12 chr4 6795408 6796658 -177492004 - L1PB2 LINE L1 -906 5240 3995 2061 63 7 7 chr4 6796762 6797031 -177491631 - AluSx SINE Alu -29 283 15 1577 158 31 54 chr4 6797031 6797348 -177491314 - MER31B LTR ERV1 -156 310 1 692 265 64 15 chr4 6797471 6797675 -177490987 - MER58A DNA MER1_type -9 215 2 972 239 80 84 chr4 6799025 6799459 -177489203 - MLT2B1 LTR ERVL -8 512 71 1153 205 216 3 chr4 6799728 6800103 -177488559 + MLT1C LTR MaLR 10 464 -3 1031 227 58 73 chr4 6800106 6800285 -177488377 + MER113 DNA MER1_type? 32 212 -309 1568 213 56 34 chr4 6800285 6800642 -177488020 - MLT1A1 LTR MaLR 0 365 1 1031 227 58 73 chr4 6800642 6800859 -177487803 + MER113 DNA MER1_type? 212 422 -99 30626 111 11 15 chr4 6801079 6806687 -177481975 + L1PA8 LINE L1 589 6172 0 3079 152 12 44 chr4 6806687 6807470 -177481192 + L1PA16 LINE L1 5031 5783 -383 790 144 68 0 chr4 6807470 6807601 -177481061 + L1PA16 LINE L1 6025 6165 -1 2749 241 75 15 chr4 6807604 6807647 -177481015 + L1MB7 LINE L1 3973 4012 -2134 202 0 91 0 chr4 6807647 6807680 -177480982 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 2749 241 75 15 chr4 6807680 6808508 -177480154 + L1MB7 LINE L1 4012 4896 -1250 640 276 60 0 chr4 6808515 6808765 -177479897 - L1M4 LINE L1 -1456 4690 4426 237 213 0 0 chr4 6808770 6808817 -177479845 + L1PA12 LINE L1 6116 6162 -6 28 29 0 0 chr4 6808834 6808869 -177479793 + AT_rich Low_complexity Low_complexity 1 35 0 530 221 39 0 chr4 6808870 6808974 -177479688 + Tigger3(Golem) DNA MER2_type 1 108 -2921 * 1598 121 55 16 chr4 6808961 6809268 -177479394 + Tigger3(Golem) DNA MER2_type 2273 2591 -438 240 167 0 0 chr4 6809268 6809310 -177479352 - L1PA13 LINE L1 -6343 444 403 2023 122 0 0 chr4 6809320 6809606 -177479056 + L1PA15 LINE L1 5879 6164 -1 1710 58 0 108 chr4 6809613 6809871 -177478791 + AluY SINE Alu 1 230 -81 356 275 0 0 chr4 6809871 6809962 -177478700 - L1ME LINE L1 -699 5465 5375 252 89 44 0 chr4 6809973 6810018 -177478644 + Alu SINE Alu 255 301 0 * 2716 150 48 17 chr4 6809998 6810457 -177478205 + Tigger3(Golem) DNA MER2_type 2557 3029 0 3936 191 58 36 chr4 6810457 6811707 -177476955 + L1MB7 LINE L1 4899 6175 -9 306 217 28 85 chr4 6811717 6811823 -177476839 + L1MC4a LINE L1 5880 5979 -1829 2164 227 88 64 chr4 6812004 6812363 -177476299 + L1ME3A LINE L1 5317 5666 -504 2462 73 0 0 chr4 6812363 6812664 -177475998 + AluSg SINE Alu 1 301 -9 2164 227 88 64 chr4 6812664 6813129 -177475533 + L1ME3A LINE L1 5666 6161 -9 1607 117 68 19 chr4 6813258 6813523 -177475139 - MLT1B LTR MaLR 0 390 113 1457 150 31 8 chr4 6813966 6814220 -177474442 - Tigger2 DNA MER2_type -1 2717 2458 2410 129 47 3 chr4 6814273 6814638 -177474024 - Tigger2 DNA MER2_type -1966 752 372 1816 99 8 4 chr4 6814741 6814994 -177473668 - L1PA8 LINE L1 -51 6121 5868 1949 126 136 79 chr4 6815024 6815389 -177473273 + MSTA LTR MaLR 1 393 -35 2192 123 0 13 chr4 6815389 6815698 -177472964 - AluSx SINE Alu -7 305 1 1949 126 136 79 chr4 6815698 6815737 -177472925 + MSTA LTR MaLR 393 428 0 9112 146 56 22 chr4 6815739 6817266 -177471396 + MSTA-int LTR MaLR 3 1580 0 2096 141 147 8 chr4 6817266 6817641 -177471021 + MSTA LTR MaLR 1 427 -1 993 308 51 45 chr4 6817663 6818172 -177470490 - L1MEd LINE L1 -5596 523 12 188 234 21 0 chr4 6818373 6818420 -177470242 - L2 LINE L2 0 3313 3266 227 387 124 13 chr4 6819828 6820053 -177468609 - L2 LINE L2 -339 2975 2726 201 349 19 0 chr4 6820074 6820180 -177468482 - L2 LINE L2 -299 2973 2866 2229 91 0 17 chr4 6820254 6820552 -177468110 - AluY SINE Alu -18 293 1 339 340 27 0 chr4 6820552 6820699 -177467963 - MIR SINE MIR 0 262 112 384 293 153 27 chr4 6820765 6821099 -177467563 + L2 LINE L2 2594 2969 -345 256 278 88 36 chr4 6821127 6821321 -177467341 - LTR67 LTR ERVL -2 555 352 303 260 42 31 chr4 6821376 6821472 -177467190 - LTR67 LTR ERVL -369 188 92 245 279 72 27 chr4 6821625 6821736 -177466926 + L2 LINE L2 3182 3297 -16 355 178 55 0 chr4 6821828 6821901 -177466761 - MER116 DNA Mariner 0 80 4 433 254 54 15 chr4 6822558 6822688 -177465974 + MIR SINE MIR 79 213 -49 244 288 0 0 chr4 6822725 6822784 -177465878 + MIR SINE MIR 204 262 0 821 180 0 0 chr4 6823501 6823623 -177465039 + FLAM_C SINE Alu 2 123 -20 227 198 75 23 chr4 6824422 6824513 -177464149 + MIR SINE MIR 85 147 -61 257 294 88 0 chr4 6825174 6825276 -177463386 - L2 LINE L2 -26 3246 3136 742 279 12 59 chr4 6825330 6825520 -177463142 + MIR SINE MIR 21 198 -64 2061 146 0 0 chr4 6825520 6825822 -177462840 + AluSx SINE Alu 1 302 -10 742 279 12 59 chr4 6825822 6825885 -177462777 + MIR SINE MIR 198 262 0 214 289 0 0 chr4 6825895 6825947 -177462715 - L2 LINE L2 -191 3081 3030 1131 186 48 5 chr4 6825963 6826173 -177462489 - MER20 DNA MER1_type 0 219 1 27 0 0 0 chr4 6827045 6827072 -177461590 + AT_rich Low_complexity Low_complexity 1 27 0 13798 139 36 14 chr4 6827995 6830260 -177458402 - Tigger1 DNA MER2_type -81 2337 24 425 103 0 17 chr4 6830375 6830433 -177458229 + AluJ/FLAM SINE Alu 2 58 -254 319 317 60 12 chr4 6831015 6831182 -177457480 + L2 LINE L2 3096 3270 -2 481 208 285 27 chr4 6831621 6831881 -177456781 - MLT1G1 LTR MaLR -24 571 245 355 260 12 8 chr4 6832255 6832380 -177456282 + MIR3 SINE MIR 70 196 -12 828 264 57 31 chr4 6833307 6833659 -177455003 + HAL1 LINE L1 2 362 -2145 4528 44 2 0 chr4 6833676 6834195 -177454467 - L1PA3 LINE L1 -3 6152 5633 11417 35 1 1 chr4 6834295 6835677 -177452985 - L1PA3 LINE L1 -2076 4070 2689 1397 301 118 27 chr4 6835678 6836631 -177452031 + HAL1 LINE L1 360 1398 -1109 255 271 57 0 chr4 6836634 6836704 -177451958 + HAL1 LINE L1 1434 1507 -1000 1690 189 6 31 chr4 6836704 6837022 -177451640 - AluJb SINE Alu 0 312 3 1494 262 75 74 chr4 6837057 6837966 -177450696 + HAL1 LINE L1 1596 2505 -2 2912 185 24 2 chr4 6838574 6839083 -177449579 + MLT2B1 LTR ERVL 1 520 0 257 192 0 39 chr4 6839327 6839379 -177449283 + MARNA DNA Mariner 64 113 -473 249 317 38 59 chr4 6839404 6839590 -177449072 + MIR SINE MIR 46 227 -35 343 316 53 36 chr4 6839628 6839853 -177448809 - MARNA DNA Mariner -173 413 185 200 253 0 35 chr4 6840483 6840570 -177448092 + (TA)n Simple_repeat Simple_repeat 1 84 0 203 189 57 0 chr4 6840615 6840668 -177447994 - MIR SINE MIR -58 204 149 6721 150 40 9 chr4 6840773 6843777 -177444885 - L1PBa LINE L1 -2396 4466 1311 618 115 353 0 chr4 6843779 6843901 -177444761 - L1PBa LINE L1 -5704 1159 995 * 1203 143 10 0 chr4 6843897 6844093 -177444569 - L1PBa LINE L1 -6665 198 1 209 311 66 9 chr4 6844098 6844204 -177444458 + MIR SINE MIR 82 193 -69 423 305 31 16 chr4 6844291 6844419 -177444243 + L2 LINE L2 3180 3309 -4 7515 148 15 24 chr4 6844427 6845568 -177443094 + L1MA5 LINE L1 3984 5135 -1165 2224 120 0 0 chr4 6845568 6845869 -177442793 + AluSx SINE Alu 1 301 -11 7515 148 15 24 chr4 6845869 6847063 -177441599 + L1MA5 LINE L1 5135 6298 -2 1615 247 50 8 chr4 6847063 6847586 -177441076 + L1M4 LINE L1 3080 3624 -2522 29 47 0 0 chr4 6847586 6847629 -177441033 + AT_rich Low_complexity Low_complexity 1 43 0 407 202 59 17 chr4 6847823 6847942 -177440720 - L1M4 LINE L1 -1015 5131 5008 22 0 0 0 chr4 6847942 6847964 -177440698 + AT_rich Low_complexity Low_complexity 1 22 0 5969 25 3 9 chr4 6847970 6848638 -177440024 - L1PA3 LINE L1 0 6155 5492 537 198 58 0 chr4 6848640 6848761 -177439901 + L1M4 LINE L1 3619 3746 -2400 290 273 114 30 chr4 6849064 6849196 -177439466 + L2 LINE L2 3171 3313 0 262 180 34 79 chr4 6849213 6849302 -177439360 - MIR SINE MIR 0 262 178 203 250 50 0 chr4 6849999 6850059 -177438603 - MIR SINE MIR -12 250 188 367 284 132 56 chr4 6850066 6850263 -177438399 - MIR SINE MIR -3 259 48 269 206 0 15 chr4 6850374 6850442 -177438220 + (CATATA)n Simple_repeat Simple_repeat 1 67 0 329 264 195 38 chr4 6851209 6851368 -177437294 - MIR3 SINE MIR -4 204 21 578 243 104 30 chr4 6851859 6852061 -177436601 + MIR SINE MIR 46 262 0 221 338 68 0 chr4 6852463 6852537 -177436125 + L2 LINE L2 3101 3179 -93 335 286 209 5 chr4 6852606 6852812 -177435850 + MIR SINE MIR 10 257 -5 410 333 117 0 chr4 6853581 6853752 -177434910 + L2 LINE L2 2771 2961 -353 5367 258 116 29 chr4 6853794 6855718 -177432944 + L1ME LINE L1 816 2573 -4368 984 229 19 19 chr4 6855718 6855928 -177432734 - MER63A DNA MER1_type 0 210 1 5367 258 116 29 chr4 6855928 6856432 -177432230 + L1ME LINE L1 2573 3032 -3909 2340 103 0 3 chr4 6856432 6856742 -177431920 - AluY SINE Alu -2 309 1 5367 258 116 29 chr4 6856742 6857853 -177430809 + L1ME LINE L1 3032 4833 -2108 588 161 0 0 chr4 6857886 6857979 -177430683 + HY3 scRNA scRNA 4 96 -5 1257 217 56 57 chr4 6857999 6858153 -177430509 + L1ME LINE L1 5967 6120 -841 1753 151 57 17 chr4 6858153 6858451 -177430211 - AluSx SINE Alu -2 310 1 1257 217 56 57 chr4 6858451 6858798 -177429864 + L1ME LINE L1 6120 6473 -488 674 155 30 37 chr4 6859159 6859392 -177429270 + AluJb SINE Alu 35 312 0 366 274 183 0 chr4 6859839 6860003 -177428659 - MIR SINE MIR 0 262 69 218 311 120 24 chr4 6860954 6861084 -177427578 + MIR SINE MIR 77 228 -34 2107 159 26 34 chr4 6861084 6861462 -177427200 - THE1C LTR MaLR 0 375 1 218 311 120 24 chr4 6861462 6861498 -177427164 + MIR SINE MIR 228 259 -3 510 257 11 75 chr4 6861681 6861868 -177426794 + MLT1D LTR MaLR 14 188 -438 14925 205 70 13 chr4 6861868 6861923 -177426739 + L1MA4A LINE L1 5 55 -6950 1915 136 59 56 chr4 6861923 6862297 -177426365 + THE1C LTR MaLR 1 375 0 14925 205 70 13 chr4 6862297 6865395 -177423267 + L1MA4A LINE L1 55 2974 -4031 189 0 0 0 chr4 6865395 6865416 -177423246 + (CAA)n Simple_repeat Simple_repeat 2 22 0 14925 205 70 13 chr4 6865416 6868603 -177420059 + L1MA4A LINE L1 2974 6746 -259 2073 123 3 0 chr4 6868603 6868887 -177419775 - AluSx SINE Alu -27 285 1 14925 205 70 13 chr4 6868887 6869156 -177419506 + L1MA4A LINE L1 6746 6998 -7 27 29 0 0 chr4 6869156 6869190 -177419472 + AT_rich Low_complexity Low_complexity 1 34 0 924 184 161 11 chr4 6869203 6869473 -177419189 + MLT1D LTR MaLR 216 502 -3 217 267 105 23 chr4 6869476 6869562 -177419100 + MIR SINE MIR 159 251 -11 1091 204 13 44 chr4 6869862 6870087 -177418575 - MER20 DNA MER1_type 0 219 2 929 200 44 62 chr4 6870515 6870790 -177417872 - MLT1C LTR MaLR -197 270 1 2122 109 0 3 chr4 6871038 6871321 -177417341 + AluSq SINE Alu 2 283 -30 226 196 0 0 chr4 6871323 6871369 -177417293 - L1MC4 LINE L1 -1339 6703 6658 468 150 0 0 chr4 6871369 6871449 -177417213 + (CA)n Simple_repeat Simple_repeat 2 81 0 276 158 0 0 chr4 6873007 6873064 -177415598 + (CA)n Simple_repeat Simple_repeat 2 58 0 429 205 0 0 chr4 6873623 6873740 -177414922 + (TCCA)n Simple_repeat Simple_repeat 1 117 0 828 272 99 60 chr4 6873758 6874374 -177414288 - L2 LINE L2 -37 3276 2641 1294 115 0 0 chr4 6874974 6875157 -177413505 + AluSp SINE Alu 129 311 -2 2933 156 71 15 chr4 6875164 6875701 -177412961 - L1MB2 LINE L1 -10 6161 5595 1242 167 34 0 chr4 6875729 6875933 -177412729 - AluJb SINE Alu -47 265 55 533 266 198 54 chr4 6876772 6877140 -177411522 - LTR33A LTR ERVL -10 513 93 194 231 0 0 chr4 6877441 6877480 -177411182 + L2 LINE L2 3194 3232 -40 263 289 40 40 chr4 6878347 6878496 -177410166 + L2 LINE L2 2685 2833 -481 353 306 127 33 chr4 6878697 6878942 -177409720 - MLT1K LTR MaLR -182 406 139 24 32 0 0 chr4 6879184 6879215 -177409447 + AT_rich Low_complexity Low_complexity 1 31 0 2165 95 0 7 chr4 6879215 6879499 -177409163 - AluSq SINE Alu -31 282 1 233 371 86 54 chr4 6879502 6879723 -177408939 + L2 LINE L2 3022 3249 -23 191 333 19 29 chr4 6880719 6880824 -177407838 + MIR SINE MIR 46 149 -113 2010 121 4 4 chr4 6881544 6881849 -177406813 - AluSx SINE Alu 0 305 1 719 145 69 0 chr4 6881852 6881983 -177406679 + L1MB2 LINE L1 6028 6167 -4 359 252 17 17 chr4 6881991 6882106 -177406556 + MIR SINE MIR 135 249 -13 1209 87 0 0 chr4 6882110 6882259 -177406403 - AluSg SINE Alu -161 149 1 956 264 97 19 chr4 6882379 6882914 -177405748 - L1M4 LINE L1 -2803 3343 2767 260 287 121 45 chr4 6883132 6883289 -177405373 - L2 LINE L2 0 3272 3104 1491 253 55 30 chr4 6883603 6884112 -177404550 - L1ME3 LINE L1 -1 6161 5640 315 281 26 18 chr4 6884264 6884378 -177404284 - MIR3 SINE MIR -24 184 70 236 271 169 34 chr4 6885013 6885131 -177403531 + L2 LINE L2 3139 3272 0 720 222 0 0 chr4 6885132 6885386 -177403276 + (TGAG)n Simple_repeat Simple_repeat 1 254 0 933 172 0 0 chr4 6885422 6885602 -177403060 + (TGAG)n Simple_repeat Simple_repeat 1 180 0 333 273 206 5 chr4 6885627 6885821 -177402841 + L2 LINE L2 2536 2768 -546 2187 128 0 6 chr4 6885833 6886146 -177402516 + AluSx SINE Alu 1 311 -1 201 291 96 8 chr4 6886152 6886340 -177402322 + MIR SINE MIR 16 260 -2 281 272 278 12 chr4 6886419 6886592 -177402070 + MIR SINE MIR 35 253 -9 1378 267 132 16 chr4 6886712 6887516 -177401146 + L2 LINE L2 2420 3288 -25 850 303 16 28 chr4 6887562 6887816 -177400846 + MIR SINE MIR 2 252 -10 309 293 98 62 chr4 6887940 6888165 -177400497 - L2 LINE L2 -115 3157 2925 303 140 0 0 chr4 6888241 6888291 -177400371 + (CA)n Simple_repeat Simple_repeat 2 51 0 455 341 96 47 chr4 6888464 6888892 -177399770 - L2 LINE L2 -1 3271 2823 1647 233 31 46 chr4 6888895 6889351 -177399311 - LTR16A LTR ERVL 0 450 2 348 359 84 20 chr4 6889383 6889634 -177399028 - L2 LINE L2 -502 2812 2546 355 230 58 0 chr4 6889737 6889824 -177398838 - MIR SINE MIR -122 140 49 302 138 17 0 chr4 6889908 6889966 -177398696 + (TTA)n Simple_repeat Simple_repeat 2 60 0 279 241 123 92 chr4 6890484 6890520 -177398142 + L1ME4a LINE L1 5795 5828 -293 2450 58 3 0 chr4 6890520 6890815 -177397847 + AluY SINE Alu 2 297 -14 279 241 123 92 chr4 6890815 6891094 -177397568 + L1ME4a LINE L1 5828 6120 -1 2735 235 81 36 chr4 6891909 6892679 -177395983 - L1ME2 LINE L1 -66 6098 5241 2449 61 0 3 chr4 6892679 6892976 -177395686 + AluY SINE Alu 1 296 -15 2735 235 81 36 chr4 6892976 6893380 -177395282 - L1ME2 LINE L1 -923 5241 4857 375 362 82 15 chr4 6893380 6893576 -177395086 - LTR16C LTR ERVL -197 294 86 370 237 65 47 chr4 6894028 6894260 -177394402 - L1ME LINE L1 -303 5818 5583 225 276 17 138 chr4 6895699 6895815 -177392847 - MIR SINE MIR -58 150 49 444 311 66 59 chr4 6896437 6896708 -177391954 + L2 LINE L2 2858 3134 -179 419 0 20 0 chr4 6896708 6896759 -177391903 + (TG)n Simple_repeat Simple_repeat 2 53 0 444 311 66 59 chr4 6896759 6896895 -177391767 + L2 LINE L2 3134 3268 -45 2848 249 142 11 chr4 6896956 6897936 -177390726 + L1MEc LINE L1 34 1141 -5255 2503 229 56 61 chr4 6897925 6898299 -177390363 + L1M4 LINE L1 3604 3978 -2168 * 3641 83 13 0 chr4 6898299 6898746 -177389916 - MLT2A2 LTR ERVL 0 453 1 2503 229 56 61 chr4 6898746 6899133 -177389529 + L1M4 LINE L1 3978 4376 -1770 2096 115 11 4 chr4 6899133 6899411 -177389251 - AluSg SINE Alu -30 280 1 2503 229 56 61 chr4 6899411 6899584 -177389078 + L1M4 LINE L1 4376 4548 -1598 * 9761 26 0 0 chr4 6899582 6900767 -177387895 - L1PA2 LINE L1 -1397 4749 3565 7964 14 1 0 chr4 6900767 6902179 -177386483 + L1PA2 LINE L1 4743 6155 0 1263 221 34 0 chr4 6902203 6902525 -177386137 + L1M4 LINE L1 4533 4865 -1281 237 173 19 192 chr4 6902526 6902600 -177386062 - L2 LINE L2 -93 3220 3167 6164 60 18 15 chr4 6902600 6903378 -177385284 + LTR17 LTR ERV1 1 780 0 237 173 19 192 chr4 6903378 6903407 -177385255 - L2 LINE L2 -146 3167 3135 2303 114 0 0 chr4 6904181 6904480 -177384182 + AluSx SINE Alu 1 299 -13 235 322 66 25 chr4 6904863 6904984 -177383678 - MER5A DNA MER1_type -1 188 63 772 69 0 0 chr4 6905174 6905276 -177383386 - L1MA1 LINE L1 0 6302 6201 2062 157 13 24 chr4 6906061 6906438 -177382224 + MLT1B LTR MaLR 1 373 -17 585 254 21 0 chr4 6907201 6907343 -177381319 + MER45A DNA AcHobo 34 178 0 256 349 66 0 chr4 6907356 6907462 -177381200 - MIR SINE MIR -71 191 79 390 273 60 40 chr4 6907589 6907739 -177380923 + L2 LINE L2 3160 3312 -1 357 298 142 0 chr4 6907793 6907934 -177380728 - MIR SINE MIR -55 207 47 672 244 5 86 chr4 6908327 6908390 -177380272 + MIR SINE MIR 26 93 -169 1923 193 11 67 chr4 6908390 6908825 -177379837 - MLT2D LTR ERVL 0 414 4 672 244 5 86 chr4 6908825 6908982 -177379680 + MIR SINE MIR 93 228 -34 524 267 36 27 chr4 6909304 6909518 -177379144 - MIR SINE MIR -13 249 34 447 254 260 21 chr4 6910343 6910822 -177377840 - L2 LINE L2 0 3313 2713 200 310 0 0 chr4 6910875 6910933 -177377729 - L2 LINE L2 -774 2540 2483 1304 277 260 15 chr4 6910950 6912037 -177376625 - L2 LINE L2 -1938 1376 23 295 243 0 23 chr4 6912345 6912607 -177376055 + C-rich Low_complexity Low_complexity 1 255 0 317 306 67 40 chr4 6912973 6913147 -177375515 + MIR3 SINE MIR 12 190 -18 364 341 12 49 chr4 6913193 6913357 -177375305 + MIR3 SINE MIR 37 194 -14 281 331 111 94 chr4 6913804 6914164 -177374498 - L2 LINE L2 -8 3264 2899 421 303 43 33 chr4 6914227 6914276 -177374386 + MIR SINE MIR 20 67 -177 2335 100 6 3 chr4 6914276 6914587 -177374075 - AluSq SINE Alu -1 312 1 421 303 43 33 chr4 6914587 6914725 -177373937 + MIR SINE MIR 67 207 -37 228 244 309 24 chr4 6914868 6914991 -177373671 - MIR SINE MIR -5 257 100 301 255 29 29 chr4 6915563 6915665 -177372997 + L3b LINE CR1 1279 1380 -203 1871 198 7 44 chr4 6915831 6916236 -177372426 - MLT1B LTR MaLR 0 390 1 1490 250 70 2 chr4 6916252 6916708 -177371954 + MLT1D LTR MaLR 1 487 -18 277 282 12 12 chr4 6916721 6916806 -177371856 + MIR SINE MIR 162 246 -16 1076 243 36 30 chr4 6917246 6917498 -177371164 - MLT1C LTR MaLR -29 438 182 2228 109 23 7 chr4 6917498 6917802 -177370860 - AluY SINE Alu -2 309 1 1076 243 36 30 chr4 6917802 6917878 -177370784 - MLT1C LTR MaLR -285 182 108 269 143 175 0 chr4 6917965 6918028 -177370634 - MLT1C LTR MaLR -368 99 26 195 310 0 0 chr4 6918534 6918592 -177370070 - L2 LINE L2 -563 2751 2694 2033 125 32 0 chr4 6918701 6918980 -177369682 + AluSx SINE Alu 7 294 -18 240 261 144 27 chr4 6919205 6919316 -177369346 + MIR SINE MIR 105 228 -34 186 370 0 0 chr4 6919335 6919408 -177369254 + MIR SINE MIR 188 260 -2 317 324 82 34 chr4 6919817 6919937 -177368725 - MIR SINE MIR -25 237 101 2680 115 51 5 chr4 6919937 6920346 -177368316 - MSTA LTR MaLR 0 428 1 317 324 82 34 chr4 6920346 6920432 -177368230 - MIR SINE MIR -161 101 21 378 265 121 8 chr4 6921237 6921369 -177367293 - MIR SINE MIR -39 223 77 1104 278 44 54 chr4 6921372 6921876 -177366786 - MLT1E LTR MaLR -3 590 92 314 299 124 17 chr4 6921948 6922182 -177366480 + L2 LINE L2 2990 3248 -65 1210 221 95 52 chr4 6922615 6923058 -177365604 - MLT1C LTR MaLR 0 467 6 218 311 68 14 chr4 6923903 6923977 -177364685 - L2 LINE L2 -28 3285 3208 793 212 13 87 chr4 6924093 6924324 -177364338 - MER58C DNA MER1_type -1 214 1 469 278 69 0 chr4 6925063 6925207 -177363455 + MIR SINE MIR 47 200 -62 486 153 57 57 chr4 6925305 6925438 -177363224 - MER5A DNA MER1_type -53 136 4 287 272 130 0 chr4 6925449 6925541 -177363121 - MER5A DNA MER1_type 0 189 86 219 331 50 2 chr4 6926165 6926303 -177362359 + MIR SINE MIR 33 175 -76 373 293 121 0 chr4 6927342 6927458 -177361204 - L2 LINE L2 -2 3270 3141 325 234 184 96 chr4 6928326 6928804 -177359858 - MLT1H LTR MaLR -17 532 13 192 221 256 12 chr4 6929053 6929139 -177359523 - L2 LINE L2 -21 3251 3145 339 277 184 28 chr4 6929144 6929285 -177359377 - MER5B DNA MER1_type -5 173 11 2266 188 65 32 chr4 6929596 6930134 -177358528 + MER74A LTR ERVL 3 558 0 1376 196 110 6 chr4 6930668 6930985 -177357677 - MLT1C LTR MaLR -8 459 110 479 186 102 51 chr4 6931266 6931384 -177357278 - MLT1C LTR MaLR -343 124 1 2133 102 7 0 chr4 6931406 6931680 -177356982 - AluY SINE Alu -9 302 27 2119 138 22 43 chr4 6931951 6932035 -177356627 + MLT1A1 LTR MaLR 1 85 -280 2014 149 155 13 chr4 6932035 6932410 -177356252 - MSTA LTR MaLR 0 428 1 9075 178 42 1 chr4 6932417 6934003 -177354659 - MSTA-int LTR MaLR 0 1651 1 1844 138 121 87 chr4 6934003 6934417 -177354245 - MSTA LTR MaLR 0 428 1 2119 138 22 43 chr4 6934417 6934694 -177353968 + MLT1A1 LTR MaLR 89 363 -2 2154 146 125 8 chr4 6934747 6935130 -177353532 + MSTA LTR MaLR 1 428 0 268 301 36 0 chr4 6935690 6935773 -177352889 - LTR67 LTR ERVL -366 191 106 701 206 153 53 chr4 6937353 6937581 -177351081 - MLT1A1 LTR MaLR -41 324 74 2442 88 0 0 chr4 6937581 6937877 -177350785 - AluY SINE Alu -15 296 1 240 211 175 0 chr4 6937897 6937954 -177350708 - MER2 DNA MER2_type -1 344 278 914 203 9 42 chr4 6938013 6938230 -177350432 - MER2 DNA MER2_type -135 210 1 233 128 106 0 chr4 6938240 6938287 -177350375 - MLT1A1 LTR MaLR -311 54 3 * 567 250 27 7 chr4 6938287 6938426 -177350236 + MLT1A2 LTR MaLR 233 374 0 282 248 199 71 chr4 6939334 6939684 -177348978 + L2 LINE L2 2624 3063 -250 * 458 257 18 0 chr4 6939683 6939796 -177348866 - MIR SINE MIR -75 187 73 308 286 142 24 chr4 6939800 6940063 -177348599 - MLT1K LTR MaLR 0 588 327 282 258 0 0 chr4 6940150 6940247 -177348415 + L1MC/D LINE L1 5156 5252 -894 422 247 140 88 chr4 6940335 6940699 -177347963 + L1MC/D LINE L1 5429 5811 -1997 319 161 16 16 chr4 6940699 6940761 -177347901 - MER46C DNA MER2_type -1 337 276 28 61 0 0 chr4 6940769 6940818 -177347844 + AT_rich Low_complexity Low_complexity 1 49 0 454 241 76 0 chr4 6940862 6941007 -177347655 - MER46C DNA MER2_type -97 241 86 904 259 19 42 chr4 6941723 6941986 -177346676 - MIR SINE MIR -2 260 4 280 272 39 10 chr4 6942712 6942815 -177345847 + CT-rich Low_complexity Low_complexity 5 110 0 196 362 46 11 chr4 6943537 6943711 -177344951 + L2 LINE L2 2827 3006 -266 540 335 61 48 chr4 6943758 6944268 -177344394 - L1MEd LINE L1 -997 1267 69 485 269 210 31 chr4 6944269 6944622 -177344040 - MLT1H LTR MaLR -7 542 127 492 232 54 152 chr4 6946461 6946737 -177341925 - MIR SINE MIR 0 262 14 324 331 8 0 chr4 6946769 6946902 -177341760 - MARNA DNA Mariner -43 543 410 2057 126 0 53 chr4 6947432 6947622 -177341040 - AluSq SINE Alu 0 310 142 2445 87 0 3 chr4 6947622 6947932 -177340730 - AluY SINE Alu -2 309 1 1371 156 0 0 chr4 6947932 6948067 -177340595 - AluSx SINE Alu -177 135 1 2057 126 0 53 chr4 6947932 6948067 -177340595 - AluSq SINE Alu -168 142 1 623 290 44 11 chr4 6948337 6948520 -177340142 - MIR SINE MIR -72 190 2 325 340 89 49 chr4 6949167 6949593 -177339069 - L2 LINE L2 -3 3269 2827 300 295 23 54 chr4 6949919 6950048 -177338614 + MIR SINE MIR 119 243 -19 243 321 74 0 chr4 6950110 6950191 -177338471 - L2 LINE L2 -50 3222 3136 7201 175 158 12 chr4 6950362 6951853 -177336809 + MER52A LTR ERV1 48 1755 0 243 234 138 21 chr4 6951895 6951989 -177336673 - MIR SINE MIR -138 124 20 234 0 0 0 chr4 6951999 6952025 -177336637 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 438 282 31 49 chr4 6952026 6952189 -177336473 - L2 LINE L2 -14 3299 3140 2631 231 92 27 chr4 6952196 6952965 -177335697 - L1ME1 LINE L1 -9 6952 6105 1902 138 57 7 chr4 6952965 6953262 -177335400 + AluSx SINE Alu 1 312 0 2631 231 92 27 chr4 6953262 6953411 -177335251 - L1ME1 LINE L1 -856 6105 5967 549 161 0 0 chr4 6953431 6953524 -177335138 - HY3 scRNA scRNA -5 96 4 4866 262 114 28 chr4 6953557 6954668 -177333994 - L1ME1 LINE L1 -2108 4833 3819 2367 107 0 3 chr4 6954668 6954978 -177333684 + AluY SINE Alu 1 309 -2 4866 262 114 28 chr4 6954978 6955482 -177333180 - L1ME1 LINE L1 -3122 3819 3360 924 229 19 19 chr4 6955482 6955692 -177332970 + MER63A DNA MER1_type 1 210 0 4866 262 114 28 chr4 6955692 6957615 -177331047 - L1ME1 LINE L1 -3581 3360 816 405 333 117 0 chr4 6957657 6957828 -177330834 - L2 LINE L2 -353 2961 2771 354 289 204 5 chr4 6958591 6958802 -177329860 - MIR SINE MIR 0 262 10 217 338 68 0 chr4 6958871 6958945 -177329717 - L2 LINE L2 -93 3179 3101 606 263 117 29 chr4 6959344 6959584 -177329078 - MIR SINE MIR 0 262 2 233 328 172 38 chr4 6959610 6959976 -177328686 - L2 LINE L2 -627 2687 2273 348 264 195 38 chr4 6960025 6960184 -177328478 + MIR3 SINE MIR 21 204 -4 311 269 8 76 chr4 6960933 6961052 -177327610 + L1MC4 LINE L1 6622 6732 -1310 428 274 132 56 chr4 6961128 6961325 -177327337 + MIR SINE MIR 48 259 -3 214 250 50 0 chr4 6961332 6961392 -177327270 + MIR SINE MIR 188 250 -12 260 366 27 9 chr4 6961465 6961577 -177327085 + MIR SINE MIR 24 137 -71 272 180 34 79 chr4 6962094 6962183 -177326479 + MIR SINE MIR 178 262 0 318 280 114 30 chr4 6962200 6962332 -177326330 - L2 LINE L2 0 3313 3171 197 336 50 17 chr4 6962464 6962583 -177326079 - L2 LINE L2 -209 3063 2941 257 262 94 60 chr4 6963282 6963431 -177325231 + MIR3 SINE MIR 33 186 -22 184 346 0 0 chr4 6963530 6963582 -177325080 - L2 LINE L2 -14 3258 3207 690 254 50 35 chr4 6963670 6963753 -177324909 + MIR SINE MIR 28 108 -154 1453 241 81 27 chr4 6963753 6964196 -177324466 - MLT1C LTR MaLR 0 467 1 690 254 50 35 chr4 6964196 6964313 -177324349 + MIR SINE MIR 108 231 -31 41271 36 22 1 chr4 6965144 6971171 -177317491 - L1PA2 LINE L1 0 6155 1 571 257 41 53 chr4 6971208 6971379 -177317283 - MIR SINE MIR 0 262 94 225 223 155 58 chr4 6971559 6971662 -177317000 + MIR SINE MIR 29 141 -67 1312 163 8 31 chr4 6972188 6972446 -177316216 - L1MB5 LINE L1 0 6174 5923 1973 133 33 0 chr4 6972826 6973126 -177315536 + AluSq SINE Alu 1 310 -3 349 336 29 14 chr4 6973491 6973631 -177315031 - MIR3 SINE MIR -49 159 18 1973 133 3 30 chr4 6973888 6974189 -177314473 + AluJb SINE Alu 1 293 -19 211 243 30 52 chr4 6974252 6974351 -177314311 + MIR SINE MIR 99 200 -8 184 287 176 0 chr4 6974505 6974613 -177314049 + L2 LINE L2 3146 3272 0 23 33 0 0 chr4 6975154 6975184 -177313478 + AT_rich Low_complexity Low_complexity 1 30 0 1997 122 3 14 chr4 6975602 6975896 -177312766 + AluSx SINE Alu 1 291 -21 3419 116 25 26 chr4 6976099 6976627 -177312035 + MER1A DNA MER1_type 1 527 0 442 327 7 20 chr4 6976944 6977094 -177311568 - L3 LINE CR1 -89 1488 1341 302 353 14 43 chr4 6977126 6977333 -177311329 + MIR SINE MIR 51 251 -11 445 250 74 23 chr4 6977492 6977668 -177310994 + MIR SINE MIR 49 233 -29 257 339 35 9 chr4 6977901 6978016 -177310646 - L2 LINE L2 -477 2837 2720 * 393 286 124 57 chr4 6978013 6978156 -177310506 + MIR SINE MIR 6 169 -93 1280 164 19 5 chr4 6978156 6978369 -177310293 - MER20 DNA MER1_type -3 216 1 393 286 124 57 chr4 6978369 6978435 -177310227 + MIR SINE MIR 169 229 -33 192 345 36 0 chr4 6979202 6979257 -177309405 + MIR3 SINE MIR 133 189 -19 195 42 0 0 chr4 6979764 6979788 -177308874 + (GA)n Simple_repeat Simple_repeat 2 25 0 269 233 0 0 chr4 6979975 6980035 -177308627 + MIR SINE MIR 88 147 -61 2188 122 0 3 chr4 6980164 6980459 -177308203 + AluSq SINE Alu 1 294 -19 203 288 34 0 chr4 6980628 6980687 -177307975 + L2 LINE L2 3136 3196 -76 1448 177 59 67 chr4 6980795 6981168 -177307494 - MLT1B LTR MaLR -20 370 1 239 299 0 0 chr4 6981241 6981308 -177307354 + MIR SINE MIR 115 181 -81 235 318 65 9 chr4 6982263 6982370 -177306292 - L2 LINE L2 -24 3248 3136 243 292 14 0 chr4 6983032 6983104 -177305558 + MIR SINE MIR 22 94 -168 2668 54 0 6 chr4 6983744 6984057 -177304605 - AluY SINE Alu 0 311 1 1984 102 11 25 chr4 6984128 6984411 -177304251 + AluSp SINE Alu 1 279 -34 575 129 0 10 chr4 6984429 6984530 -177304132 + (GGAA)n Simple_repeat Simple_repeat 1 100 0 792 207 40 6 chr4 6984576 6984750 -177303912 + MER5A DNA MER1_type 1 180 -9 479 311 21 31 chr4 6984936 6985129 -177303533 - MIR SINE MIR -70 192 2 926 127 0 182 chr4 6985187 6985423 -177303239 - 7SK RNA RNA 0 193 1 311 261 35 49 chr4 6985445 6985587 -177303075 + MER5B DNA MER1_type 1 140 -38 208 335 99 13 chr4 6985893 6986045 -177302617 - MIR3 SINE MIR -24 184 20 187 273 91 57 chr4 6986395 6986483 -177302179 + MIR SINE MIR 55 145 -63 469 320 120 27 chr4 6987155 6987526 -177301136 - L2 LINE L2 -223 3090 2685 618 242 3 0 chr4 6988608 6988961 -177299701 + (TG)n Simple_repeat Simple_repeat 1 354 0 780 217 49 0 chr4 6989227 6989411 -177299251 - MER20 DNA MER1_type -24 195 3 317 260 0 6 chr4 6990025 6990206 -177298456 + (CA)n Simple_repeat Simple_repeat 1 180 0 2067 183 46 0 chr4 6990434 6990828 -177297834 - MSTB LTR MaLR 0 426 15 435 343 157 0 chr4 6991143 6991353 -177297309 - MIR SINE MIR -1 261 19 201 74 0 0 chr4 6991402 6991429 -177297233 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 412 244 193 10 chr4 6991744 6991941 -177296721 - MIR SINE MIR -10 252 20 341 294 87 38 chr4 6992108 6992347 -177296315 - MIR SINE MIR -12 250 1 419 297 143 6 chr4 6992381 6992556 -177296106 - MIR SINE MIR -7 255 57 348 255 20 29 chr4 6992856 6992958 -177295704 + L1ME4a LINE L1 5800 5900 -221 278 141 16 47 chr4 6993679 6993733 -177294929 + ORSL DNA AcHobo 1 54 -221 1365 247 70 20 chr4 6993733 6994178 -177294484 - MLT1C LTR MaLR 0 467 1 302 267 67 0 chr4 6994912 6994987 -177293675 + MIR SINE MIR 14 93 -169 2339 59 42 3 chr4 6995323 6995610 -177293052 + AluY SINE Alu 1 298 -13 237 321 130 41 chr4 6995816 6996062 -177292600 - L2 LINE L2 -90 3182 2915 2054 180 69 7 chr4 6997721 6998161 -177290501 + MLT1C LTR MaLR 1 467 0 234 324 59 20 chr4 6998173 6998275 -177290387 + MER5A DNA MER1_type 80 185 -4 279 345 18 0 chr4 6998464 6998574 -177290088 - LTR16C LTR ERVL -287 204 93 996 163 98 25 chr4 6999390 6999593 -177289069 - MER20 DNA MER1_type -1 218 1 198 286 209 9 chr4 6999724 6999829 -177288833 - L2 LINE L2 0 3313 3188 408 258 86 7 chr4 6999971 7000122 -177288540 - MIR SINE MIR -72 190 28 2318 104 3 0 chr4 7000375 7000674 -177287988 + AluSx SINE Alu 1 300 -12 241 289 59 17 chr4 7000819 7000951 -177287711 + MIR3 SINE MIR 25 161 -47 2375 79 0 16 chr4 7001682 7001986 -177286676 + AluSg SINE Alu 1 299 -11 1912 122 4 0 chr4 7001997 7002252 -177286410 + AluSx SINE Alu 39 294 -18 2356 80 6 26 chr4 7002429 7002742 -177285920 - AluSq SINE Alu -6 307 1 949 215 45 126 chr4 7003139 7003647 -177285015 + MLT1C LTR MaLR 1 467 0 640 293 90 24 chr4 7004090 7004424 -177284238 - MLT1I LTR MaLR -50 359 4 281 336 66 8 chr4 7005335 7005591 -177283071 - LTR33 LTR ERVL -241 280 10 2394 100 3 0 chr4 7005606 7005961 -177282701 - AluSx SINE Alu 0 356 1 416 300 53 87 chr4 7005974 7006274 -177282388 + L3 LINE CR1 1251 1540 -37 599 228 178 15 chr4 7006442 7006639 -177282023 + MIR SINE MIR 13 241 -21 2794 54 3 40 chr4 7006756 7007129 -177281533 - MER4E LTR ERV1 0 766 408 43870 47 1 1 chr4 7007129 7013247 -177275415 - L1PA4 LINE L1 -5 6150 30 1322 200 0 8 chr4 7013295 7013535 -177275127 - MER65C LTR ERV1 -41 420 183 377 118 0 0 chr4 7013541 7013592 -177275070 - MER65C LTR ERV1 -410 51 1 638 333 57 41 chr4 7013594 7014087 -177274575 - MER65C-int LTR ERV1 -2 4869 4369 1501 274 74 14 chr4 7014204 7014623 -177274039 - MER65C-int LTR ERV1 -779 4092 3649 1619 107 5 0 chr4 7014640 7014855 -177273807 + AluSg/x SINE Alu 82 297 -15 291 139 0 0 chr4 7014864 7014907 -177273755 + tRNA-Gln-CAG tRNA tRNA 1 43 -32 3326 197 60 77 chr4 7014908 7016142 -177272520 - MER65C-int LTR ERV1 -3125 3473 1037 699 137 0 0 chr4 7016144 7016284 -177272378 - AluSc SINE Alu 0 317 178 1240 197 45 74 chr4 7016285 7016654 -177272008 - MER65-int LTR ERV1 -2902 1969 1612 2307 98 7 0 chr4 7016654 7016949 -177271713 - AluSx SINE Alu -15 297 1 1240 197 45 74 chr4 7016949 7017000 -177271662 - MER65-int LTR ERV1 -3259 1612 1561 44458 40 6 2 chr4 7017120 7023241 -177265421 - L1PA3 LINE L1 -3 6152 7 521 257 43 53 chr4 7023248 7023435 -177265227 - MER34 LTR ERV1 -319 223 39 282 154 0 58 chr4 7023721 7023773 -177264889 - LTR57-int LTR ERVL -4992 351 303 305 307 57 17 chr4 7024504 7024680 -177263982 - MIR SINE MIR -26 236 54 402 301 7 15 chr4 7024977 7025113 -177263549 + L2 LINE L2 3136 3270 -2 215 277 208 10 chr4 7025229 7025330 -177263332 - MIR SINE MIR -109 153 33 496 231 52 15 chr4 7025734 7025868 -177262794 + MIR3 SINE MIR 17 155 -53 426 278 28 45 chr4 7026679 7026885 -177261777 + MIR SINE MIR 1 205 -57 25 0 0 0 chr4 7027191 7027216 -177261446 + AT_rich Low_complexity Low_complexity 1 25 0 746 212 7 0 chr4 7028728 7028874 -177259788 + MER58B DNA MER1_type 195 341 0 1958 140 164 32 chr4 7029108 7029451 -177259211 - MSTA LTR MaLR 0 428 28 2012 130 0 7 chr4 7029451 7029757 -177258905 + AluSx SINE Alu 1 304 0 1958 140 164 32 chr4 7029757 7029790 -177258872 - MSTA LTR MaLR -400 28 1 1761 199 70 3 chr4 7030479 7030821 -177257841 + MLT1A1 LTR MaLR 1 365 0 386 285 148 54 chr4 7031657 7032027 -177256635 - L2 LINE L2 -284 2988 2590 843 286 68 39 chr4 7032634 7032716 -177255946 - MLT1L LTR MaLR -14 601 523 1663 194 0 9 chr4 7032716 7033031 -177255631 + AluJo SINE Alu 1 312 0 843 286 68 39 chr4 7033031 7033434 -177255228 - MLT1L LTR MaLR -92 523 102 339 321 44 0 chr4 7033798 7033935 -177254727 - MIR SINE MIR -6 256 114 256 204 0 0 chr4 7034177 7034221 -177254441 + MLT1F1 LTR MaLR 82 125 -442 2636 219 14 10 chr4 7034221 7034811 -177253851 + L1MD3 LINE L1 7404 7995 0 411 273 64 52 chr4 7035165 7035432 -177253230 + HAL1 LINE L1 801 1070 -1437 312 203 29 94 chr4 7035407 7035545 -177253117 + L1MA4 LINE L1 6165 6293 -7 * 6637 180 19 20 chr4 7035624 7037513 -177251149 + L1PA16 LINE L1 3895 5779 -387 1952 169 0 0 chr4 7037513 7037820 -177250842 + AluSx SINE Alu 1 307 -5 6637 180 19 20 chr4 7037820 7038206 -177250456 + L1PA16 LINE L1 5779 6164 -2 573 316 33 9 chr4 7038261 7038473 -177250189 - MIR SINE MIR 0 262 46 2556 117 14 0 chr4 7038553 7038912 -177249750 - THE1B LTR MaLR 0 364 1 10126 111 60 2 chr4 7038912 7040406 -177248256 - THE1B-int LTR MaLR 0 1580 1 2408 135 6 6 chr4 7040406 7040770 -177247892 - THE1B LTR MaLR 0 364 1 557 251 35 18 chr4 7041098 7041269 -177247393 - MER69A DNA AcHobo -2 175 2 1456 206 102 75 chr4 7041561 7041843 -177246819 - MER34 LTR ERV1 -9 533 235 2571 53 0 31 chr4 7041843 7042164 -177246498 + AluY SINE Alu 1 311 0 1456 206 102 75 chr4 7042164 7042283 -177246379 - MER34 LTR ERV1 -307 235 121 8552 202 54 29 chr4 7042283 7042719 -177245943 - MER34-int LTR ERV1 -250 4686 4262 2126 122 11 63 chr4 7042719 7043081 -177245581 + MER61A LTR ERV1 1 343 0 8552 202 54 29 chr4 7043081 7044723 -177243939 - MER34-int LTR ERV1 -674 4262 2556 26369 39 9 0 chr4 7044723 7050517 -177238145 + L1PA4 LINE L1 2 5832 -323 749 54 0 0 chr4 7050552 7050645 -177238017 + L1PA4 LINE L1 6054 6146 -9 402 194 101 36 chr4 7050652 7050791 -177237871 - MER34-int LTR ERV1 -3558 1378 1231 294 281 52 44 chr4 7051110 7051245 -177237417 - MER34-int LTR ERV1 -6147 654 519 1342 186 129 73 chr4 7051258 7051706 -177236956 - MER66A LTR ERV1 0 601 100 2528 201 44 2 chr4 7052141 7052638 -177236024 - MER34 LTR ERV1 0 542 25 659 290 47 53 chr4 7052985 7053437 -177235225 + LTR16A1 LTR ERVL 4 452 -5 189 259 155 0 chr4 7053457 7053515 -177235147 - L2 LINE L2 -65 3207 3141 365 301 81 0 chr4 7054195 7054331 -177234331 - MIR SINE MIR -70 192 46 235 312 0 0 chr4 7054434 7054511 -177234151 + MIR SINE MIR 176 252 -10 243 250 0 0 chr4 7054526 7054610 -177234052 + (CTG)n Simple_repeat Simple_repeat 3 86 0 383 309 17 11 chr4 7054616 7054852 -177233810 + (TTG)n Simple_repeat Simple_repeat 1 237 0 381 276 19 12 chr4 7055158 7055481 -177233181 + (TTG)n Simple_repeat Simple_repeat 1 325 0 232 324 124 0 chr4 7056082 7056187 -177232475 + L2 LINE L2 3150 3267 -5 2206 104 20 0 chr4 7056358 7056655 -177232007 - AluSq SINE Alu -10 303 1 1227 188 38 15 chr4 7056963 7057224 -177231438 - L1MA9 LINE L1 -38 6274 6008 352 221 26 62 chr4 7057557 7057670 -177230992 - MIR SINE MIR -68 194 86 312 163 0 0 chr4 7057774 7057823 -177230839 - MLT2D LTR ERVL 0 414 366 1340 143 177 33 chr4 7057827 7057934 -177230728 + MER2 DNA MER2_type 3 93 -252 3525 125 9 24 chr4 7057934 7058469 -177230193 + MER1A DNA MER1_type 1 527 0 1340 143 177 33 chr4 7058469 7058661 -177230001 + MER2 DNA MER2_type 93 345 0 1652 203 72 6 chr4 7058661 7059010 -177229652 - MLT2D LTR ERVL -42 372 1 1125 249 76 15 chr4 7059534 7060107 -177228555 - L2 LINE L2 0 3313 2700 741 301 115 8 chr4 7060283 7060695 -177227967 - L2 LINE L2 -204 3109 2655 279 314 51 8 chr4 7060783 7060901 -177227761 + L2 LINE L2 3189 3311 -2 294 95 0 0 chr4 7060902 7060944 -177227718 + (TGGA)n Simple_repeat Simple_repeat 1 42 0 207 0 0 0 chr4 7061361 7061384 -177227278 + (A)n Simple_repeat Simple_repeat 1 23 0 495 306 39 69 chr4 7061636 7061996 -177226666 - LTR67 LTR ERVL -124 433 85 1020 129 14 37 chr4 7062004 7062140 -177226522 - MLT1A2 LTR MaLR -1 373 235 345 47 0 0 chr4 7062140 7062183 -177226479 + (GA)n Simple_repeat Simple_repeat 2 44 0 1020 129 14 37 chr4 7062183 7062365 -177226297 - MLT1A2 LTR MaLR -139 235 1 281 50 25 0 chr4 7062472 7062512 -177226150 + L2 LINE L2 3214 3254 -18 21 36 0 0 chr4 7062925 7062953 -177225709 + AT_rich Low_complexity Low_complexity 1 28 0 2541 65 0 0 chr4 7063045 7063339 -177225323 + AluY SINE Alu 1 294 -17 302 230 73 51 chr4 7063346 7063524 -177225138 + L1MC/D LINE L1 5258 5439 -2369 1853 244 54 9 chr4 7063540 7064304 -177224358 + L1ME1 LINE L1 60 897 -5499 2508 237 50 35 chr4 7064305 7066319 -177222343 + L1ME1 LINE L1 3028 5212 -1023 216 0 0 0 chr4 7066319 7066343 -177222319 + (CA)n Simple_repeat Simple_repeat 2 25 0 2508 237 50 35 chr4 7066343 7067376 -177221286 + L1ME1 LINE L1 5212 6228 -7 318 315 0 0 chr4 7067386 7067478 -177221184 + L1MC/D LINE L1 5427 5518 -2290 21 0 0 0 chr4 7067572 7067593 -177221069 + AT_rich Low_complexity Low_complexity 1 21 0 597 278 128 18 chr4 7067737 7068018 -177220644 - L2 LINE L2 -3 3310 2999 270 336 0 9 chr4 7068202 7068312 -177220350 + MIR SINE MIR 45 153 -55 375 257 83 0 chr4 7068321 7068430 -177220232 - L2 LINE L2 -3 3269 3152 952 201 67 48 chr4 7068433 7068702 -177219960 + MLT1A2 LTR MaLR 2 275 -99 1800 164 0 11 chr4 7068716 7069003 -177219659 + AluJb SINE Alu 5 288 -24 586 254 31 21 chr4 7069117 7069310 -177219352 + MIR SINE MIR 34 228 -34 189 107 0 0 chr4 7071726 7071754 -177216908 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 385 247 55 41 chr4 7071860 7072006 -177216656 + MIR SINE MIR 8 155 -107 251 229 41 82 chr4 7072155 7072277 -177216385 + MLT1J2 LTR MaLR 3 119 -331 6838 36 0 1 chr4 7072466 7073268 -177215394 + L1PA4 LINE L1 5352 6152 -3 7074 183 169 16 chr4 7073327 7074843 -177213819 + MER52A LTR ERV1 1 1749 -6 504 224 131 90 chr4 7074860 7075105 -177213557 + MLT1J LTR MaLR 257 511 0 471 219 31 25 chr4 7075298 7075458 -177213204 - L1ME4a LINE L1 -2 6119 5959 437 110 14 0 chr4 7075479 7075552 -177213110 + (TTCC)n Simple_repeat Simple_repeat 1 74 0 277 306 39 54 chr4 7075760 7076011 -177212651 - MIR SINE MIR -5 257 9 260 211 211 0 chr4 7076126 7076221 -177212441 - MIR SINE MIR -116 146 32 1967 126 99 15 chr4 7076337 7076671 -177211991 + THE1B LTR MaLR 3 364 0 12400 79 6 0 chr4 7076671 7078237 -177210425 + THE1B-int LTR MaLR 1 1575 -5 2339 99 51 26 chr4 7078243 7078595 -177210067 + THE1B LTR MaLR 4 364 0 699 285 52 38 chr4 7078597 7078966 -177209696 - HAL1 LINE L1 -100 2407 2034 397 219 31 0 chr4 7078963 7079059 -177209603 + L1MC5 LINE L1 7690 7788 -173 * 597 309 78 25 chr4 7079202 7079522 -177209140 + L1MEc LINE L1 208 544 -5852 2619 115 33 14 chr4 7079568 7079987 -177208675 - MSTA LTR MaLR -1 427 1 700 199 97 58 chr4 7080055 7080281 -177208381 + L1MB8 LINE L1 5944 6178 0 729 288 30 9 chr4 7080282 7080619 -177208043 + L1MEc LINE L1 673 1016 -5380 1454 272 67 54 chr4 7080648 7081262 -177207400 + L1MCb LINE L1 3 624 -5421 481 171 29 19 chr4 7081289 7081394 -177207268 - L1MC5 LINE L1 -173 7788 7683 * 623 265 65 33 chr4 7081382 7081560 -177207102 + HAL1 LINE L1 2034 2224 -283 234 0 0 0 chr4 7081560 7081586 -177207076 + (TG)n Simple_repeat Simple_repeat 2 27 0 623 265 65 33 chr4 7081586 7081652 -177207010 + HAL1 LINE L1 2224 2286 -221 8547 242 42 19 chr4 7081698 7082440 -177206222 + L1MCb LINE L1 2442 3166 -3398 2278 110 0 7 chr4 7082440 7082748 -177205914 + AluSg SINE Alu 1 306 -4 8547 242 42 19 chr4 7082748 7084828 -177203834 + L1MCb LINE L1 3166 5284 -1280 5881 157 34 81 chr4 7084827 7085453 -177203209 + L1MC3 LINE L1 5914 6443 -1342 * 1659 192 27 3 chr4 7085453 7085577 -177203085 + AluJb SINE Alu 1 121 -191 216 0 0 0 chr4 7085577 7085601 -177203061 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1659 192 27 3 chr4 7085601 7085773 -177202889 + AluJb SINE Alu 121 304 -8 5881 157 34 81 chr4 7085773 7086488 -177202174 + L1MC3 LINE L1 6443 7191 -594 1988 131 38 35 chr4 7086830 7087196 -177201466 - THE1C LTR MaLR -8 367 1 23 0 0 0 chr4 7087216 7087239 -177201423 + AT_rich Low_complexity Low_complexity 1 23 0 331 303 127 21 chr4 7087296 7087438 -177201224 - MIR SINE MIR -74 188 32 229 265 61 41 chr4 7087791 7087889 -177200773 - MIR SINE MIR -162 100 1 273 346 31 25 chr4 7088196 7088355 -177200307 + MIR SINE MIR 37 196 -66 352 288 11 34 chr4 7088677 7088810 -177199852 + MIR SINE MIR 16 150 -58 575 225 46 101 chr4 7089837 7089892 -177198770 - MER63A DNA MER1_type -1478 210 154 2022 131 17 3 chr4 7089892 7090182 -177198480 - AluSc SINE Alu -15 294 1 575 225 46 101 chr4 7090182 7090344 -177198318 - MER63A DNA MER1_type -1534 154 5 298 206 0 29 chr4 7090803 7090871 -177197791 - L3 LINE CR1 -533 1044 979 32831 39 7 1 chr4 7091619 7096352 -177192310 + L1PA4 LINE L1 1388 6150 -5 832 70 9 0 chr4 7096352 7096466 -177192196 + MER4E LTR ERV1 408 522 -244 254 295 51 0 chr4 7296471 7296549 -176992113 + MIR SINE MIR 173 254 -8 867 246 188 56 chr4 7297632 7298256 -176990406 + L2 LINE L2 2573 3313 0 317 308 11 11 chr4 7298295 7298386 -176990276 + MIR3 SINE MIR 8 98 -110 208 349 0 0 chr4 7298570 7298633 -176990029 + (ATG)n Simple_repeat Simple_repeat 2 64 0 817 157 29 34 chr4 7298636 7298834 -176989828 + MER6 DNA MER2_type -65 865 0 466 163 24 91 chr4 7298869 7299045 -176989617 - MIR SINE MIR 0 262 101 526 162 0 20 chr4 7299253 7299352 -176989310 - MER3 DNA MER1_type -104 105 9 609 308 59 26 chr4 7299408 7299713 -176988949 - L2 LINE L2 -3 3310 2996 1150 286 175 25 chr4 7299716 7300432 -176988230 - L2 LINE L2 -506 2808 1986 1802 207 35 72 chr4 7300444 7300960 -176987702 + MLT1D LTR MaLR 3 499 -6 211 250 86 35 chr4 7300972 7301088 -176987574 - L2 LINE L2 -1340 1974 1853 243 247 214 11 chr4 7301368 7301457 -176987205 + L2 LINE L2 3166 3272 0 605 176 0 17 chr4 7301582 7301701 -176986961 - L1MC2 LINE L1 -9 6335 6219 2113 120 3 0 chr4 7301701 7302010 -176986652 - AluSx SINE Alu -2 310 1 1069 145 0 79 chr4 7302028 7302255 -176986407 - AluJo SINE Alu -12 300 92 1243 170 17 4 chr4 7302255 7302515 -176986147 - L1M3 LINE L1 -353 5818 5549 416 298 76 8 chr4 7303412 7303543 -176985119 - MIR3 SINE MIR -64 144 5 221 197 45 76 chr4 7303577 7303643 -176985019 - MIR SINE MIR -105 103 40 2281 76 0 20 chr4 7303819 7304123 -176984539 + AluY SINE Alu 1 298 -13 1596 205 58 54 chr4 7304559 7305062 -176983600 - MLT1D LTR MaLR 0 505 1 515 303 113 42 chr4 7305065 7305471 -176983191 - MLT1K LTR MaLR -28 560 126 327 296 30 54 chr4 7306207 7306408 -176982254 - MIR SINE MIR -47 215 21 2220 93 3 7 chr4 7306492 7306802 -176981860 - AluSc SINE Alu 0 309 1 373 299 36 7 chr4 7306919 7307056 -176981606 - MIR SINE MIR -81 181 41 722 286 15 0 chr4 7307854 7308050 -176980612 - MIR SINE MIR 0 262 64 1274 232 141 20 chr4 7308190 7308638 -176980024 - MLT1D LTR MaLR -2 503 1 196 239 0 0 chr4 7308662 7308708 -176979954 - L3 LINE CR1 -126 1451 1406 2822 9 0 0 chr4 7308967 7309282 -176979380 - AluYb8 SINE Alu -2 316 2 467 232 72 16 chr4 7309345 7309470 -176979192 + MIR SINE MIR 20 151 -111 833 165 0 0 chr4 7309541 7309674 -176978988 + FLAM_C SINE Alu 1 133 0 2899 194 14 45 chr4 7310982 7311602 -176977060 - MER77 LTR ERV1 0 605 5 299 242 23 117 chr4 7311645 7311909 -176976753 - L1MC4a LINE L1 -1777 6031 5793 226 241 19 0 chr4 7312785 7312839 -176975823 - MIR SINE MIR -32 230 176 246 216 91 0 chr4 7312985 7313073 -176975589 - L1MC4 LINE L1 0 8042 7947 401 271 26 58 chr4 7313383 7313538 -176975124 - MIR SINE MIR -105 157 8 376 230 11 0 chr4 7313571 7313658 -176975004 - MER117 DNA MER1_type -40 157 70 207 290 54 32 chr4 7313858 7313951 -176974711 + MIR SINE MIR 21 115 -147 185 350 41 0 chr4 7314425 7314522 -176974140 + MIR SINE MIR 110 210 -52 2013 120 0 0 chr4 7314582 7314894 -176973768 - AluSq SINE Alu 0 312 1 238 315 48 48 chr4 7315244 7315390 -176973272 + MIR SINE MIR 76 221 -41 718 177 0 0 chr4 7315523 7315647 -176973015 + FLAM_A SINE Alu 12 135 -7 330 26 0 0 chr4 7315744 7315783 -176972879 + (TG)n Simple_repeat Simple_repeat 2 40 0 309 266 13 25 chr4 7315786 7315865 -176972797 + L1MC4 LINE L1 6648 6725 -1317 482 279 95 54 chr4 7316527 7316842 -176971820 + HAL1 LINE L1 549 876 -1631 887 259 112 61 chr4 7316880 7317582 -176971080 + HAL1 LINE L1 961 1985 -522 1389 171 16 68 chr4 7317582 7317903 -176970759 + AluJo SINE Alu 1 304 -8 887 259 112 61 chr4 7317903 7318099 -176970563 + HAL1 LINE L1 1985 2169 -338 372 271 53 13 chr4 7318167 7318318 -176970344 + HAL1 LINE L1 2018 2174 -333 3022 110 43 0 chr4 7318908 7319172 -176969490 - L1P4 LINE L1 -412 5756 5464 1985 114 3 20 chr4 7319172 7319478 -176969184 - AluSq SINE Alu -12 301 1 3022 110 43 0 chr4 7319478 7319659 -176969003 - L1P4 LINE L1 -704 5464 5292 433 221 73 7 chr4 7319702 7319838 -176968824 - L1MC5 LINE L1 -753 7208 7064 1609 103 22 0 chr4 7320889 7321121 -176967541 + L1PA13 LINE L1 5927 6163 0 2642 158 16 5 chr4 7321257 7321739 -176966923 + L1MA4 LINE L1 5546 6045 -123 1911 79 0 0 chr4 7321776 7322016 -176966646 + AluSc SINE Alu 1 240 -69 320 287 11 0 chr4 7323214 7323301 -176965361 + MIR SINE MIR 86 173 -89 581 213 0 28 chr4 7323308 7323449 -176965213 - L1MA10 LINE L1 0 6334 6198 387 186 17 169 chr4 7323461 7323587 -176965075 - L1ME1 LINE L1 -174 5992 5895 2068 114 0 0 chr4 7323587 7323890 -176964772 - AluSx SINE Alu 0 303 1 387 186 17 169 chr4 7323890 7323933 -176964729 - L1ME1 LINE L1 -271 5895 5847 2049 247 144 25 chr4 7324050 7324861 -176963801 - HAL1 LINE L1 -1478 1029 122 419 194 43 21 chr4 7325180 7325273 -176963389 - MIR SINE MIR -100 162 68 3040 120 12 58 chr4 7325679 7326354 -176962308 - L1PA3 LINE L1 -3 6152 5509 2083 104 20 0 chr4 7326796 7327093 -176961569 - AluSq SINE Alu -10 303 1 1228 188 38 15 chr4 7327401 7327662 -176961000 - L1MA9 LINE L1 -38 6274 6008 406 221 26 62 chr4 7327995 7328108 -176960554 - MIR SINE MIR -68 194 86 313 163 0 0 chr4 7328212 7328261 -176960401 - MLT2D LTR ERVL 0 414 366 534 128 284 9 chr4 7328265 7328372 -176960290 + MER2 DNA MER2_type 3 139 -206 3221 106 7 28 chr4 7328372 7328833 -176959829 + MER1A DNA MER1_type 1 451 -78 1119 219 192 39 chr4 7329707 7330032 -176958630 + MLT1D LTR MaLR 1 411 -94 1035 206 0 0 chr4 7330032 7330255 -176958407 - L1MA4 LINE L1 -1 6299 6077 1119 219 192 39 chr4 7330255 7330367 -176958295 + MLT1D LTR MaLR 411 505 0 232 296 122 9 chr4 7330526 7330641 -176958021 + MIR SINE MIR 120 247 -15 243 269 0 0 chr4 7331341 7331393 -176957269 + MIR SINE MIR 209 260 -2 320 381 28 23 chr4 7332399 7332575 -176956087 + MIR SINE MIR 10 186 -76 243 0 0 0 chr4 7332615 7332642 -176956020 + (TA)n Simple_repeat Simple_repeat 1 27 0 * 306 0 0 0 chr4 7332641 7332675 -176955987 + (GA)n Simple_repeat Simple_repeat 2 35 0 748 215 48 27 chr4 7332676 7332862 -176955800 - MIR SINE MIR -72 190 1 204 244 22 0 chr4 7332881 7332926 -176955736 + L2 LINE L2 3210 3255 -17 532 237 14 3 chr4 7333027 7333386 -176955276 + (TGGA)n Simple_repeat Simple_repeat 1 363 0 544 237 23 62 chr4 7333712 7333969 -176954693 + Charlie3 DNA MER1_type 2458 2704 -6 414 115 33 0 chr4 7334105 7334166 -176954496 + MER2 DNA MER2_type 283 345 0 1667 203 72 6 chr4 7334166 7334515 -176954147 - MLT2D LTR ERVL -42 372 1 1301 249 76 15 chr4 7335039 7335612 -176953050 - L2 LINE L2 0 3313 2700 846 298 112 8 chr4 7335788 7336200 -176952462 - L2 LINE L2 -204 3109 2655 331 314 51 8 chr4 7336289 7336407 -176952255 + L2 LINE L2 3189 3311 -2 294 95 0 0 chr4 7336408 7336450 -176952212 + (TGGA)n Simple_repeat Simple_repeat 1 42 0 207 0 0 0 chr4 7336867 7336890 -176951772 + (A)n Simple_repeat Simple_repeat 1 23 0 517 306 39 69 chr4 7337142 7337502 -176951160 - LTR67 LTR ERVL -124 433 85 1027 129 14 37 chr4 7337510 7337646 -176951016 - MLT1A2 LTR MaLR -1 373 235 345 47 0 0 chr4 7337646 7337689 -176950973 + (GA)n Simple_repeat Simple_repeat 2 44 0 1027 129 14 37 chr4 7337689 7337871 -176950791 - MLT1A2 LTR MaLR -139 235 1 306 100 183 0 chr4 7337958 7338018 -176950644 + L2 LINE L2 3184 3254 -18 21 36 0 0 chr4 7338431 7338459 -176950203 + AT_rich Low_complexity Low_complexity 1 28 0 2418 61 0 0 chr4 7338551 7338845 -176949817 + AluY SINE Alu 1 294 -17 294 230 73 51 chr4 7338852 7339030 -176949632 + L1MC/D LINE L1 5258 5439 -2369 1901 246 50 19 chr4 7339046 7339811 -176948851 + L1ME1 LINE L1 60 897 -5499 2512 239 49 34 chr4 7339812 7341826 -176946836 + L1ME1 LINE L1 3028 5212 -1023 216 0 0 0 chr4 7341826 7341850 -176946812 + (CA)n Simple_repeat Simple_repeat 2 25 0 2512 239 49 34 chr4 7341850 7342883 -176945779 + L1ME1 LINE L1 5212 6228 -7 326 315 0 0 chr4 7342893 7342985 -176945677 + L1MC/D LINE L1 5427 5518 -2290 21 0 0 0 chr4 7343078 7343099 -176945563 + AT_rich Low_complexity Low_complexity 1 21 0 1112 226 33 7 chr4 7344474 7344646 -176944016 - L1MEc LINE L1 -4236 2160 1975 4154 93 35 10 chr4 7344646 7345237 -176943425 + MER4B LTR ERV1 5 610 0 1112 226 33 7 chr4 7345237 7345370 -176943292 - L1MEc LINE L1 -4421 1975 1847 1779 165 71 19 chr4 7345376 7345740 -176942922 - L1MB5 LINE L1 -8 6166 5784 1748 184 127 29 chr4 7345837 7346255 -176942407 - LTR2B LTR ERV1 0 490 32 4159 271 70 30 chr4 7346273 7347085 -176941577 - L1MEc LINE L1 -4631 1765 987 883 86 78 0 chr4 7347085 7347213 -176941449 + MER85 DNA T2_type 1 138 -1 4159 271 70 30 chr4 7347213 7348063 -176940599 - L1MEc LINE L1 -5409 987 36 437 184 31 20 chr4 7348063 7348161 -176940501 + MIR SINE MIR 162 260 -2 2879 149 7 2 chr4 7348586 7349023 -176939639 + MER72 LTR ERV1 6 444 -278 2236 114 64 9 chr4 7349023 7349366 -176939296 - THE1C LTR MaLR 0 375 14 2020 135 0 0 chr4 7349360 7349648 -176939014 + MER72 LTR ERV1 435 722 0 * 4154 175 17 11 chr4 7350684 7351122 -176937540 + MER50 LTR ERV1 1 446 -288 2498 92 53 8 chr4 7351122 7351481 -176937181 + THE1C LTR MaLR 1 375 0 4154 175 17 11 chr4 7351481 7351749 -176936913 + MER50 LTR ERV1 446 711 -23 44615 40 2 2 chr4 7351840 7357727 -176930935 + L1PA3 LINE L1 1 5887 -268 730 271 128 18 chr4 7357970 7358251 -176930411 - L2 LINE L2 -3 3310 2999 309 336 0 9 chr4 7358435 7358545 -176930117 + MIR SINE MIR 45 153 -55 420 257 83 0 chr4 7358554 7358663 -176929999 - L2 LINE L2 -3 3269 3152 962 201 67 48 chr4 7358666 7358935 -176929727 + MLT1A2 LTR MaLR 2 275 -99 1689 164 0 11 chr4 7358949 7359236 -176929426 + AluJb SINE Alu 5 288 -24 675 275 29 24 chr4 7359336 7359543 -176929119 + MIR SINE MIR 21 228 -34 202 308 169 6 chr4 7361680 7361852 -176926810 + L2 LINE L2 2854 3053 -219 189 107 0 0 chr4 7361959 7361987 -176926675 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 181 219 0 0 chr4 7361988 7362020 -176926642 - L2 LINE L2 -12 3260 3229 430 238 54 48 chr4 7362093 7362240 -176926422 + MIR SINE MIR 8 155 -107 236 226 30 52 chr4 7362390 7362511 -176926151 + MLT1J LTR MaLR 4 157 -331 6756 41 0 1 chr4 7362700 7363502 -176925160 + L1PA4 LINE L1 5352 6152 -3 7221 184 169 16 chr4 7363561 7365077 -176923585 + MER52A LTR ERV1 1 1749 -6 505 224 131 90 chr4 7365094 7365339 -176923323 + MLT1J LTR MaLR 257 511 0 464 219 31 25 chr4 7365532 7365692 -176922970 - L1ME4a LINE L1 -2 6119 5959 314 123 18 0 chr4 7365713 7365770 -176922892 + CT-rich Low_complexity Low_complexity 1 58 0 369 294 69 50 chr4 7365978 7366228 -176922434 - MIR SINE MIR -5 257 2 333 314 147 5 chr4 7366248 7366439 -176922223 - MIR SINE MIR -13 249 32 1987 123 99 15 chr4 7366555 7366889 -176921773 + THE1B LTR MaLR 3 364 0 12449 79 6 0 chr4 7366889 7368455 -176920207 + THE1B-int LTR MaLR 1 1575 -5 2342 99 51 26 chr4 7368461 7368813 -176919849 + THE1B LTR MaLR 4 364 0 665 287 54 41 chr4 7368815 7369184 -176919478 - HAL1 LINE L1 -100 2407 2034 392 219 31 0 chr4 7369181 7369277 -176919385 + L1MC5 LINE L1 7690 7788 -173 * 613 297 81 28 chr4 7369420 7369740 -176918922 + L1MEc LINE L1 208 544 -5852 2615 117 33 14 chr4 7369786 7370205 -176918457 - MSTA LTR MaLR -1 427 1 690 199 97 58 chr4 7370273 7370499 -176918163 + L1MB8 LINE L1 5944 6178 0 732 288 30 9 chr4 7370500 7370837 -176917825 + L1MEc LINE L1 673 1016 -5380 1476 272 67 54 chr4 7370866 7371480 -176917182 + L1MCb LINE L1 3 624 -5421 478 171 29 19 chr4 7371507 7371612 -176917050 - L1MC5 LINE L1 -173 7788 7683 * 577 262 65 44 chr4 7371600 7371778 -176916884 + HAL1 LINE L1 2034 2220 -287 234 0 0 0 chr4 7371778 7371804 -176916858 + (TG)n Simple_repeat Simple_repeat 2 27 0 577 262 65 44 chr4 7371804 7371873 -176916789 + HAL1 LINE L1 2220 2286 -221 6195 246 49 15 chr4 7371919 7372661 -176916001 + L1MCb LINE L1 2442 3157 -3407 2120 116 0 7 chr4 7372661 7372971 -176915691 + AluSg SINE Alu 1 308 -2 6195 246 49 15 chr4 7372971 7374403 -176914259 + L1MCb LINE L1 3157 4647 -1917 580 324 5 0 chr4 7374507 7374692 -176913970 - MIR SINE MIR -38 224 39 2167 103 7 0 chr4 7374956 7375258 -176913404 - AluSq SINE Alu -9 304 1 196 296 122 61 chr4 7375442 7375736 -176912926 - L2 LINE L2 -46 3226 2915 331 311 49 44 chr4 7375754 7375937 -176912725 - L2 LINE L2 -508 2806 2623 2436 162 76 8 chr4 7376069 7376556 -176912106 + L1MB5 LINE L1 5592 6111 -63 316 268 173 36 chr4 7377182 7377350 -176911312 + L1ME4a LINE L1 5853 6043 -78 206 341 22 52 chr4 7377511 7377646 -176911016 - MIR3 SINE MIR -40 168 38 339 175 16 16 chr4 7377840 7377903 -176910759 + MIR3 SINE MIR 133 195 -13 188 341 141 22 chr4 7378237 7378372 -176910290 - L2 LINE L2 -598 2716 2566 306 269 121 0 chr4 7378881 7379022 -176909640 - L1M4 LINE L1 -1301 4845 4688 2155 107 3 0 chr4 7379116 7379415 -176909247 + AluSq SINE Alu 3 302 -11 898 251 31 4 chr4 7380555 7380782 -176907880 - MIR SINE MIR -1 261 29 260 314 101 0 chr4 7380854 7381013 -176907649 + MER91A DNA MER1_type 22 196 0 407 215 13 0 chr4 7381398 7381477 -176907185 + MIR SINE MIR 2 81 -181 2795 187 19 0 chr4 7381479 7381965 -176906697 + MER68 LTR ERV1 3 497 -65 * 4067 117 23 143 chr4 7381960 7382220 -176906442 - Tigger3b DNA MER2_type -1797 1232 943 2034 108 17 0 chr4 7382220 7382507 -176906155 + AluSx SINE Alu 21 312 0 4067 117 23 143 chr4 7382507 7382688 -176905974 - Tigger3b DNA MER2_type -2086 943 742 1857 150 3 10 chr4 7382688 7382988 -176905674 - AluSx SINE Alu -14 298 1 4067 117 23 143 chr4 7382988 7383067 -176905595 - Tigger3b DNA MER2_type -2287 742 655 204 40 0 0 chr4 7383067 7383092 -176905570 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 4067 117 23 143 chr4 7383092 7383976 -176904686 - Tigger3b DNA MER2_type -2374 655 1 392 116 29 14 chr4 7383976 7384045 -176904617 + MER68 LTR ERV1 491 560 -2 562 276 61 33 chr4 7384047 7384228 -176904434 + MIR SINE MIR 77 262 0 784 243 70 27 chr4 7385343 7385599 -176903063 + MIR SINE MIR 3 259 -3 200 244 0 23 chr4 7385610 7385658 -176903004 + (TAG)n Simple_repeat Simple_repeat 3 50 -36 2210 109 3 0 chr4 7385658 7385969 -176902693 + AluSq SINE Alu 1 312 -1 200 244 0 23 chr4 7385969 7386006 -176902656 + (TAG)n Simple_repeat Simple_repeat 50 86 0 2283 96 0 0 chr4 7386026 7386328 -176902334 + AluSq SINE Alu 1 302 -11 556 244 8 8 chr4 7386923 7387046 -176901616 - L2 LINE L2 -8 3305 3183 216 0 0 0 chr4 7387744 7387768 -176900894 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 186 254 34 17 chr4 7387859 7387918 -176900744 + MIR SINE MIR 81 140 -68 1673 182 65 11 chr4 7388125 7388493 -176900169 + MLT1B LTR MaLR 1 388 -2 293 302 59 27 chr4 7388495 7388697 -176899965 - MIR SINE MIR 0 262 12 33 25 0 0 chr4 7389689 7389729 -176898933 + AT_rich Low_complexity Low_complexity 1 40 0 516 323 114 24 chr4 7390146 7390480 -176898182 - L3 LINE CR1 -17 1560 1197 367 322 128 0 chr4 7390492 7390719 -176897943 - L2 LINE L2 -509 2805 2550 524 189 28 9 chr4 7390930 7391036 -176897626 - MLT1C LTR MaLR -7 460 353 262 273 55 55 chr4 7391238 7391348 -176897314 - MER5A DNA MER1_type 0 189 80 1862 186 83 34 chr4 7391351 7391796 -176896866 - MLT1C LTR MaLR 0 467 1 344 403 14 0 chr4 7391820 7391959 -176896703 + L3 LINE CR1 1436 1576 -1 272 91 23 0 chr4 7392070 7392114 -176896548 + L1MC3 LINE L1 7550 7594 -191 926 155 83 6 chr4 7392115 7392296 -176896366 + L1MC2 LINE L1 6138 6332 -12 2318 72 0 0 chr4 7392424 7392716 -176895946 + AluSx SINE Alu 1 292 -20 354 98 0 0 chr4 7394248 7394299 -176894363 + (GGGA)n Simple_repeat Simple_repeat 4 54 0 188 283 0 0 chr4 7394432 7394478 -176894184 - L2 LINE L2 -8 3264 3219 194 283 0 0 chr4 7394654 7394700 -176893962 + MIR SINE MIR 30 75 -133 180 263 30 50 chr4 7394774 7394873 -176893789 + L2 LINE L2 920 1016 -2298 1523 221 85 32 chr4 7394895 7395356 -176893306 + MLT1D LTR MaLR 21 505 0 223 213 147 13 chr4 7395469 7395544 -176893118 - MIR SINE MIR -173 89 5 310 302 223 0 chr4 7395629 7395894 -176892768 + L2 LINE L2 1228 1551 -1763 379 274 18 97 chr4 7396107 7396333 -176892329 - L2 LINE L2 -28 3285 3078 189 345 0 0 chr4 7396673 7396731 -176891931 + L2 LINE L2 3215 3272 0 198 333 109 14 chr4 7396802 7396940 -176891722 + MIR SINE MIR 88 238 -24 291 270 92 50 chr4 7397213 7397353 -176891309 + MIR3 SINE MIR 71 237 -25 185 259 0 69 chr4 7397931 7397989 -176890673 + L2 LINE L2 3249 3302 -11 197 235 12 99 chr4 7399243 7399324 -176889338 - MIR SINE MIR -116 146 73 * 254 343 20 0 chr4 7399323 7399422 -176889240 + MIR SINE MIR 52 152 -110 893 243 53 0 chr4 7400251 7400457 -176888205 + MIR SINE MIR 13 229 -33 234 303 66 53 chr4 7400544 7400772 -176887890 + L2 LINE L2 2806 3036 -236 803 111 0 22 chr4 7400773 7400908 -176887754 + L1PA13 LINE L1 6031 6162 -1 287 29 29 105 chr4 7400961 7401066 -176887596 + (TATAA)n Simple_repeat Simple_repeat 3 99 0 324 114 53 35 chr4 7401069 7401236 -176887426 + (TTATA)n Simple_repeat Simple_repeat 1 169 0 368 270 48 100 chr4 7401236 7401466 -176887196 + L2 LINE L2 3015 3232 -40 228 275 46 69 chr4 7401867 7401998 -176886664 + MIR SINE MIR 85 212 -50 2264 102 0 0 chr4 7402135 7402439 -176886223 + AluSx SINE Alu 5 308 -4 230 182 36 18 chr4 7402440 7402495 -176886167 - MIR3 SINE MIR -13 195 140 526 295 87 12 chr4 7402552 7402725 -176885937 - MIR SINE MIR -4 258 73 432 192 79 68 chr4 7403206 7403383 -176885279 + LTR16C LTR ERVL 298 476 -15 214 230 92 7 chr4 7403383 7403535 -176885127 + (GTGTG)n Simple_repeat Simple_repeat 3 167 0 292 319 104 25 chr4 7403607 7403657 -176885005 + MER5B DNA MER1_type 1 46 -132 870 238 6 0 chr4 7403657 7403829 -176884833 + FAM SINE Alu 2 174 -1 292 319 104 25 chr4 7403829 7403941 -176884721 + MER5B DNA MER1_type 46 176 -2 253 314 41 0 chr4 7404213 7404334 -176884328 + MIR3 SINE MIR 7 132 -76 234 188 0 0 chr4 7404699 7404747 -176883915 - HAL1b LINE L1 -556 792 745 460 317 108 34 chr4 7405093 7405566 -176883096 - HAL1 LINE L1 -590 1917 1410 486 286 181 26 chr4 7405578 7405844 -176882818 + L1ME4a LINE L1 5813 6119 -2 210 158 0 0 chr4 7405846 7405884 -176882778 + (TTA)n Simple_repeat Simple_repeat 3 40 0 295 235 81 59 chr4 7405927 7406063 -176882599 + LTR16A LTR ERVL 282 420 -30 * 2732 176 35 6 chr4 7406043 7406526 -176882136 - MER68 LTR ERV1 -65 497 1 1739 201 50 42 chr4 7407313 7407771 -176880891 + MLT1C LTR MaLR 6 467 0 281 355 83 0 chr4 7407773 7407894 -176880768 - MIR SINE MIR -54 208 78 2242 219 38 20 chr4 7408798 7409411 -176879251 + L1M4 LINE L1 4243 4866 -1280 * 5862 157 34 81 chr4 7409410 7410036 -176878626 + L1MC3 LINE L1 5914 6443 -1342 1543 192 27 3 chr4 7410036 7410160 -176878502 + AluJb SINE Alu 1 121 -191 216 0 0 0 chr4 7410160 7410184 -176878478 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1543 192 27 3 chr4 7410184 7410356 -176878306 + AluJb SINE Alu 121 304 -8 5862 157 34 81 chr4 7410356 7411071 -176877591 + L1MC3 LINE L1 6443 7191 -594 1998 131 38 35 chr4 7411413 7411779 -176876883 - THE1C LTR MaLR -8 367 1 23 0 0 0 chr4 7411799 7411822 -176876840 + AT_rich Low_complexity Low_complexity 1 23 0 395 296 127 21 chr4 7411879 7412021 -176876641 - MIR SINE MIR -74 188 32 267 265 61 41 chr4 7412374 7412472 -176876190 - MIR SINE MIR -162 100 1 332 346 31 25 chr4 7412779 7412938 -176875724 + MIR SINE MIR 37 196 -66 391 288 11 34 chr4 7413260 7413393 -176875269 + MIR SINE MIR 16 150 -58 567 234 37 92 chr4 7414420 7414475 -176874187 - MER63A DNA MER1_type -1478 210 154 1903 131 17 3 chr4 7414475 7414765 -176873897 - AluSc SINE Alu -15 294 1 567 234 37 92 chr4 7414765 7414927 -176873735 - MER63A DNA MER1_type -1534 154 5 330 206 0 29 chr4 7415386 7415454 -176873208 - L3 LINE CR1 -533 1044 979 197 303 10 61 chr4 7415583 7415682 -176872980 - L2 LINE L2 -853 2461 2368 200 368 88 7 chr4 7415721 7415857 -176872805 - L3 LINE CR1 -1026 551 405 2141 71 0 7 chr4 7416536 7416818 -176871844 + AluSx SINE Alu 23 302 -10 294 333 71 0 chr4 7417106 7417232 -176871430 + L2 LINE L2 3138 3272 0 26 0 0 0 chr4 7418080 7418106 -176870556 + AT_rich Low_complexity Low_complexity 1 26 0 308 263 10 10 chr4 7419141 7419240 -176869422 + (CA)n Simple_repeat Simple_repeat 1 99 0 1184 247 241 10 chr4 7420128 7420614 -176868048 + L1MD2 LINE L1 5730 6327 -32 305 198 64 10 chr4 7420620 7420694 -176867968 + AluJ/FLAM SINE Alu 1 60 -242 249 301 139 8 chr4 7420694 7420953 -176867709 - L2 LINE L2 -1163 2151 1859 372 351 119 21 chr4 7420988 7421375 -176867287 + L2 LINE L2 2843 3267 -5 4532 80 17 19 chr4 7421641 7422159 -176866503 + L1PB2 LINE L1 5513 6031 -120 2354 75 0 7 chr4 7422159 7422464 -176866198 + AluSx SINE Alu 1 303 -9 4532 80 17 19 chr4 7422464 7422585 -176866077 + L1PB2 LINE L1 6031 6151 0 1711 211 29 27 chr4 7422835 7423248 -176865414 + MLT2D LTR ERVL 1 414 0 1263 185 22 128 chr4 7423413 7423819 -176864843 + MLT1A1 LTR MaLR 1 363 -2 323 295 62 18 chr4 7424104 7424216 -176864446 + MIR SINE MIR 107 223 -39 1596 196 164 56 chr4 7424300 7424850 -176863812 + MLT1E2 LTR MaLR 18 626 0 269 186 57 43 chr4 7426631 7426701 -176861961 - L1ME4a LINE L1 -78 6043 5973 756 194 114 0 chr4 7426962 7427137 -176861525 + L1MD3 LINE L1 7793 7987 -8 317 292 62 80 chr4 7427751 7428076 -176860586 + L2 LINE L2 2915 3233 -39 735 335 13 4 chr4 7428174 7428401 -176860261 - MIR SINE MIR -33 229 1 194 318 39 70 chr4 7429266 7429395 -176859267 + L2 LINE L2 3111 3235 -37 478 282 35 53 chr4 7429455 7429682 -176858980 - MIR SINE MIR -12 250 28 203 256 0 0 chr4 7429699 7429742 -176858920 + L2 LINE L2 3271 3313 0 209 315 13 0 chr4 7429760 7429847 -176858815 + GA-rich Low_complexity Low_complexity 1 88 0 368 292 128 65 chr4 7429857 7430210 -176858452 - L2 LINE L2 -63 3209 2835 421 268 190 0 chr4 7430341 7430483 -176858179 + MIR SINE MIR 20 188 -74 1869 137 23 0 chr4 7430686 7430985 -176857677 + AluSx SINE Alu 1 306 -6 259 314 69 0 chr4 7431671 7431773 -176856889 + MIR3 SINE MIR 11 119 -89 2883 128 16 5 chr4 7431922 7432345 -176856317 + MSTA LTR MaLR 1 428 0 7881 181 47 7 chr4 7432347 7433852 -176854810 + MSTA-int LTR MaLR 3 1567 -13 2584 111 47 8 chr4 7433853 7434239 -176854423 + MSTA LTR MaLR 28 428 0 1165 305 55 19 chr4 7434247 7434988 -176853674 - L1M4 LINE L1 -2231 3915 3148 806 104 0 17 chr4 7435011 7435126 -176853536 - AluSg/x SINE Alu -17 295 183 24 32 0 0 chr4 7435401 7435432 -176853230 + AT_rich Low_complexity Low_complexity 1 31 0 496 245 193 30 chr4 7435724 7435957 -176852705 - L2 LINE L2 -940 2374 2104 1322 190 43 4 chr4 7436036 7436182 -176852480 - AluJo SINE Alu -30 282 120 207 0 0 0 chr4 7436182 7436205 -176852457 + (TA)n Simple_repeat Simple_repeat 1 23 0 1322 190 43 4 chr4 7436205 7436316 -176852346 - AluJo SINE Alu -192 120 15 2181 207 21 31 chr4 7436668 7437190 -176851472 - Charlie1b DNA MER1_type -6 517 1 261 283 11 33 chr4 7437211 7437303 -176851359 - L2 LINE L2 -62 3210 3121 269 327 44 9 chr4 7437357 7437470 -176851192 + L2 LINE L2 2904 3020 -252 197 284 0 15 chr4 7437567 7437615 -176851047 + L2 LINE L2 3207 3254 -18 1218 67 0 0 chr4 7437615 7437793 -176850869 + (TAGA)n Simple_repeat Simple_repeat 1 178 0 291 28 0 0 chr4 7437793 7437829 -176850833 + (CATA)n Simple_repeat Simple_repeat 1 36 0 197 284 0 15 chr4 7437829 7437846 -176850816 + L2 LINE L2 3252 3272 0 203 256 49 12 chr4 7437948 7438030 -176850632 - MIR SINE MIR -65 143 59 193 261 101 43 chr4 7438477 7438546 -176850116 + MIR SINE MIR 109 181 -81 329 281 99 18 chr4 7439232 7439421 -176849241 - MIR SINE MIR -33 229 29 826 168 8 0 chr4 7441078 7441209 -176847453 - FLAM_C SINE Alu -10 133 2 214 242 0 97 chr4 7441420 7441482 -176847180 + MIR3 SINE MIR 99 154 -54 202 229 202 9 chr4 7442264 7442373 -176846289 + MIR SINE MIR 119 248 -14 21 36 0 0 chr4 7442613 7442641 -176846021 + GC_rich Low_complexity Low_complexity 1 28 0 555 228 179 0 chr4 7443534 7443679 -176844983 - MIR SINE MIR -8 254 84 376 310 76 18 chr4 7444230 7444401 -176844261 - MIR SINE MIR -75 187 7 210 330 44 0 chr4 7444406 7444497 -176844165 - MIR SINE MIR -96 166 72 202 260 231 0 chr4 7444485 7444589 -176844073 - L2 LINE L2 -697 2617 2490 * 325 278 125 65 chr4 7444654 7444737 -176843925 + L2 LINE L2 2698 2775 -497 2240 92 3 0 chr4 7444737 7445041 -176843621 + AluSx SINE Alu 1 305 -7 1551 118 4 0 chr4 7445041 7445267 -176843395 + AluSp SINE Alu 76 304 -9 325 278 125 65 chr4 7445267 7445591 -176843071 + L2 LINE L2 2774 3123 -149 1385 239 75 66 chr4 7445664 7446133 -176842529 - HAL1 LINE L1 0 2507 2029 1748 179 0 22 chr4 7446133 7446452 -176842210 - AluJb SINE Alu 0 312 1 1385 239 75 66 chr4 7446452 7446636 -176842026 - HAL1 LINE L1 -478 2029 1848 872 193 34 6 chr4 7446637 7446813 -176841849 + MER5A DNA MER1_type 6 186 -3 2168 229 117 41 chr4 7446819 7447080 -176841582 - HAL1 LINE L1 -696 1811 1571 2333 90 0 0 chr4 7447080 7447381 -176841281 - AluSg SINE Alu -9 301 1 2168 229 117 41 chr4 7447381 7447397 -176841265 - HAL1 LINE L1 -936 1571 1558 4150 159 44 24 chr4 7447397 7448164 -176840498 - LTR39 LTR ERV1 0 783 1 2168 229 117 41 chr4 7448164 7448784 -176839878 - HAL1 LINE L1 -949 1558 845 962 288 142 12 chr4 7448930 7449354 -176839308 + L2 LINE L2 2829 3307 -6 3280 224 11 3 chr4 7449462 7450109 -176838553 + MER82 DNA MER2_type 2 653 0 1275 259 63 46 chr4 7450835 7451360 -176837302 - L1ME2 LINE L1 -11 6153 5620 362 322 22 44 chr4 7451613 7451793 -176836869 - MIR SINE MIR -57 205 30 2124 177 46 37 chr4 7452517 7452924 -176835738 + L1MB8 LINE L1 5655 6070 -108 2243 125 3 0 chr4 7452924 7453221 -176835441 + AluSx SINE Alu 1 298 -14 2124 177 46 37 chr4 7453221 7453332 -176835330 + L1MB8 LINE L1 6070 6178 0 521 268 92 44 chr4 7453361 7453589 -176835073 + MIR SINE MIR 14 252 -10 2332 105 0 3 chr4 7454522 7454827 -176833835 - AluSg SINE Alu -6 304 1 594 206 58 13 chr4 7455033 7455188 -176833474 + MER45A DNA AcHobo 1 162 -16 200 171 143 71 chr4 7455355 7455425 -176833237 + L3b LINE CR1 1489 1563 -20 * 257 269 25 84 chr4 7455404 7455523 -176833139 + MIR SINE MIR 104 215 -47 533 284 20 0 chr4 7455829 7455977 -176832685 + MIR SINE MIR 2 152 -110 6619 72 25 0 chr4 7456065 7457245 -176831417 - L1PA10 LINE L1 0 6168 4960 10417 28 0 0 chr4 7457911 7459910 -176828752 - L1PA2 LINE L1 0 6155 4157 203 260 0 20 chr4 7459985 7460035 -176828627 - MIR SINE MIR -68 140 92 669 235 0 0 chr4 7460304 7460483 -176828179 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 512 277 84 25 chr4 7461075 7461277 -176827385 - MIR SINE MIR -12 250 37 584 330 85 0 chr4 7461383 7461607 -176827055 + MIR SINE MIR 12 254 -8 356 225 22 0 chr4 7461645 7461734 -176826928 - MER103 DNA DNA -73 93 3 180 350 41 0 chr4 7462082 7462179 -176826483 - L2 LINE L2 -304 2968 2868 311 213 13 0 chr4 7463061 7463136 -176825526 - MIR SINE MIR -64 144 69 188 286 18 0 chr4 7463279 7463335 -176825327 - MIR SINE MIR -13 249 193 532 196 65 36 chr4 7463426 7463564 -176825098 - MIR SINE MIR -86 176 35 223 182 45 0 chr4 7463967 7464011 -176824651 + MIR SINE MIR 108 153 -109 1859 169 7 3 chr4 7464069 7464370 -176824292 + AluJb SINE Alu 1 302 -10 470 233 169 29 chr4 7465133 7465305 -176823357 - MIR SINE MIR -14 248 53 1730 189 14 0 chr4 7465699 7465826 -176822836 + AluJo SINE Alu 1 125 -187 189 0 0 0 chr4 7465826 7465847 -176822815 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1730 189 14 0 chr4 7465847 7466016 -176822646 + AluJo SINE Alu 125 301 -11 181 266 266 64 chr4 7466435 7466544 -176822118 - L2 LINE L2 -40 3232 3102 387 253 32 11 chr4 7466674 7466769 -176821893 + MIR SINE MIR 24 120 -88 473 190 15 0 chr4 7466985 7467082 -176821580 - MIR SINE MIR -65 143 45 583 268 122 58 chr4 7467480 7467622 -176821040 + L1MD2 LINE L1 5989 6121 -238 255 61 0 0 chr4 7467622 7467655 -176821007 + (CA)n Simple_repeat Simple_repeat 2 34 0 583 268 122 58 chr4 7467655 7467796 -176820866 + L1MD2 LINE L1 6121 6298 -61 15408 120 24 29 chr4 7467796 7469971 -176818691 + Tigger1 DNA MER2_type 3 2166 -252 1766 110 0 4 chr4 7469971 7470207 -176818455 - AluSc SINE Alu -74 235 1 15408 120 24 29 chr4 7470207 7470459 -176818203 + Tigger1 DNA MER2_type 2166 2418 0 583 268 122 58 chr4 7470459 7470503 -176818159 + L1MD2 LINE L1 6298 6338 -21 391 269 52 72 chr4 7470708 7470901 -176817761 + MIR SINE MIR 40 228 -34 605 187 13 47 chr4 7470955 7471105 -176817557 + MER58B DNA MER1_type 197 341 0 834 168 0 0 chr4 7471125 7471256 -176817406 + FLAM_C SINE Alu 1 131 -2 2666 200 26 17 chr4 7471308 7471529 -176817133 + L1MC/D LINE L1 4839 5057 -1302 2453 106 0 3 chr4 7471529 7471841 -176816821 + AluSx SINE Alu 2 312 0 2666 200 26 17 chr4 7471841 7472565 -176816097 + L1MC/D LINE L1 5057 5788 -571 238 170 85 0 chr4 7472767 7472814 -176815848 + L2 LINE L2 3263 3313 0 259 288 7 7 chr4 7472922 7473007 -176815655 + GA-rich Low_complexity Low_complexity 1 85 0 223 254 16 16 chr4 7473535 7473598 -176815064 + MIR SINE MIR 20 82 -180 180 228 0 0 chr4 7473728 7473785 -176814877 + (CAT)n Simple_repeat Simple_repeat 3 59 0 318 330 9 0 chr4 7473797 7473906 -176814756 + (CAT)n Simple_repeat Simple_repeat 2 111 0 404 264 6 0 chr4 7473919 7474093 -176814569 + (CAT)n Simple_repeat Simple_repeat 1 175 0 1273 201 95 77 chr4 7474116 7474589 -176814073 - MER66A LTR ERV1 0 478 97 344 277 5 0 chr4 7474658 7474870 -176813792 + (CAT)n Simple_repeat Simple_repeat 1 213 0 426 311 37 0 chr4 7475088 7475223 -176813439 - MIR SINE MIR -37 225 86 200 259 19 0 chr4 7475225 7475279 -176813383 + (TAA)n Simple_repeat Simple_repeat 2 56 0 219 292 0 45 chr4 7475290 7475379 -176813283 + MIR SINE MIR 16 100 -108 358 328 56 0 chr4 7475521 7475646 -176813016 + MIR SINE MIR 57 188 -74 313 282 76 112 chr4 7477110 7477493 -176811169 - L2 LINE L2 -2 3270 2902 1089 140 0 0 chr4 7479797 7480155 -176808507 + (TCCA)n Simple_repeat Simple_repeat 1 358 0 616 211 21 84 chr4 7480199 7480389 -176808273 - MER5B DNA MER1_type 0 178 1 404 324 21 14 chr4 7480430 7480575 -176808087 - MER5B DNA MER1_type -32 146 1 1224 85 5 70 chr4 7480578 7480777 -176807885 + MER30B DNA MER1_type 1 186 -4 394 311 13 12 chr4 7480779 7480907 -176807755 + MIR SINE MIR 34 156 -64 317 222 37 0 chr4 7481217 7481298 -176807364 + MER5A DNA MER1_type 4 87 -102 211 286 0 0 chr4 7481766 7481815 -176806847 - L2 LINE L2 -6 3307 3259 908 291 23 16 chr4 7481821 7482079 -176806583 + MIR SINE MIR 1 260 -2 287 366 10 0 chr4 7482443 7482544 -176806118 - MIR SINE MIR -3 259 158 227 372 27 16 chr4 7485389 7485572 -176803090 + MIR SINE MIR 70 254 -8 703 228 54 11 chr4 7485972 7486156 -176802506 + MIR SINE MIR 1 192 -70 210 347 10 0 chr4 7486707 7486805 -176801857 + (TGAA)n Simple_repeat Simple_repeat 1 99 0 446 257 35 20 chr4 7488340 7488492 -176800170 + MIR SINE MIR 32 185 -62 1463 190 15 90 chr4 7488781 7489171 -176799491 - MLT1B LTR MaLR -2 388 28 446 147 186 39 chr4 7489138 7489267 -176799395 - MLT1B LTR MaLR -242 148 1 * 1251 220 66 42 chr4 7489269 7489694 -176798968 + MLT1C LTR MaLR 17 463 -4 237 364 30 0 chr4 7489717 7489816 -176798846 - MIR SINE MIR -35 227 126 255 276 35 11 chr4 7489933 7490020 -176798642 + MIR SINE MIR 31 119 -89 219 350 0 40 chr4 7490028 7490128 -176798534 - MIR SINE MIR -159 103 8 3279 150 53 26 chr4 7490134 7490720 -176797942 - LTR43 LTR ERV1 0 602 1 307 214 29 14 chr4 7490734 7490804 -176797858 + MIR SINE MIR 8 78 -184 188 219 0 0 chr4 7490923 7490955 -176797707 - MER5A DNA MER1_type -1 188 157 235 265 92 0 chr4 7490966 7491039 -176797623 - MIR SINE MIR -76 132 51 1586 132 156 93 chr4 7491081 7491459 -176797203 - MER4A LTR ERV1 0 664 263 485 104 42 21 chr4 7491461 7491557 -176797105 - MER4A LTR ERV1 -566 98 1 2359 98 3 0 chr4 7491885 7492192 -176796470 - AluSq SINE Alu -5 308 1 281 312 127 26 chr4 7492390 7492579 -176796083 + MIR SINE MIR 43 250 -12 1862 189 78 71 chr4 7492680 7493246 -176795416 - LTR59 LTR ERV1 -11 586 17 518 198 35 9 chr4 7493256 7493372 -176795290 - L1PA3 LINE L1 -10 6145 6027 376 283 147 22 chr4 7493670 7493854 -176794808 + L1MC4 LINE L1 7525 7731 -311 1854 119 101 0 chr4 7493887 7494164 -176794498 - AluSx SINE Alu -7 305 1 2096 191 87 17 chr4 7494209 7494691 -176793971 - MER34 LTR ERV1 -15 527 12 241 258 155 7 chr4 7494816 7494971 -176793691 + L1MC5 LINE L1 7703 7880 -81 608 299 83 24 chr4 7495112 7495523 -176793139 + L1ME4a LINE L1 5563 5997 -124 3528 73 54 0 chr4 7495551 7496029 -176792633 + L1PA8 LINE L1 5668 6171 -1 344 246 35 18 chr4 7496168 7496282 -176792380 - L1ME1 LINE L1 -5 6161 6046 1248 180 3 52 chr4 7496307 7496596 -176792066 - L1MC3 LINE L1 -2 7783 7509 191 224 24 118 chr4 7497008 7497093 -176791569 + L2 LINE L2 2697 2773 -541 596 219 12 21 chr4 7497381 7497801 -176790861 + (TCCA)n Simple_repeat Simple_repeat 1 416 0 345 378 31 0 chr4 7497803 7497930 -176790732 - L2 LINE L2 -4 3268 3138 866 223 175 41 chr4 7498801 7499195 -176789467 - MLT1C LTR MaLR 0 467 21 2339 113 0 0 chr4 7499394 7499696 -176788966 - AluSx SINE Alu -10 302 1 579 220 124 6 chr4 7499760 7499937 -176788725 + MER58C DNA MER1_type 1 198 -17 458 320 51 6 chr4 7500280 7500455 -176788207 - MIR SINE MIR 0 262 80 1407 140 62 135 chr4 7501089 7501460 -176787202 + MER2 DNA MER2_type 1 344 0 471 331 12 17 chr4 7501628 7501800 -176786862 + MIR SINE MIR 92 262 0 208 308 84 35 chr4 7501852 7501995 -176786667 - MIR3 SINE MIR -57 151 2 1978 117 0 0 chr4 7502490 7502773 -176785889 + AluSx SINE Alu 25 307 -5 349 303 80 17 chr4 7502777 7502952 -176785710 + Charlie8 DNA MER1_type 78 263 -2154 212 246 18 18 chr4 7503034 7503091 -176785571 + MIR3 SINE MIR 104 160 -48 227 289 78 39 chr4 7504254 7504382 -176784280 + MIR SINE MIR 13 145 -117 2195 205 152 5 chr4 7504383 7504950 -176783712 - MLT1E1 LTR MaLR -1 653 4 366 252 30 15 chr4 7505424 7505555 -176783107 + (TG)n Simple_repeat Simple_repeat 2 134 0 285 289 35 35 chr4 7505585 7505727 -176782935 + (CATG)n Simple_repeat Simple_repeat 1 142 0 642 326 52 17 chr4 7506169 7506402 -176782260 + MIR SINE MIR 11 251 -11 817 169 84 0 chr4 7506423 7506565 -176782097 + AluJb SINE Alu 137 290 -22 233 263 10 30 chr4 7506565 7506664 -176781998 + (TATG)n Simple_repeat Simple_repeat 4 100 0 490 242 253 10 chr4 7508368 7508566 -176780096 + MIR SINE MIR 17 262 0 1420 182 162 17 chr4 7509276 7509622 -176779040 - MSTD LTR MaLR 0 396 1 2022 150 80 102 chr4 7510690 7511169 -176777493 - MLT2B2 LTR ERVL 0 515 48 2207 87 3 13 chr4 7511169 7511480 -176777182 + AluSg1 SINE Alu 1 308 -1 2022 150 80 102 chr4 7511480 7511527 -176777135 - MLT2B2 LTR ERVL -467 48 1 246 282 71 24 chr4 7512073 7512158 -176776504 - L2 LINE L2 0 3272 3184 348 302 16 16 chr4 7512181 7512310 -176776352 + MER117 DNA MER1_type 27 155 -42 348 278 72 0 chr4 7512352 7512449 -176776213 - MIR SINE MIR -8 254 151 375 23 0 0 chr4 7512454 7512498 -176776164 + (TG)n Simple_repeat Simple_repeat 1 44 0 485 213 148 0 chr4 7513265 7513373 -176775289 + L2 LINE L2 3190 3313 0 279 355 35 18 chr4 7513591 7513760 -176774902 + L2 LINE L2 2898 3069 -203 985 242 7 28 chr4 7513841 7514094 -176774568 - MIR SINE MIR 0 262 12 1838 162 0 0 chr4 7514163 7514472 -176774190 + AluSx SINE Alu 1 309 -3 976 159 0 16 chr4 7514492 7514674 -176773988 + AluSg/x SINE Alu 129 307 -5 1719 236 77 19 chr4 7515292 7515771 -176772891 - LTR53 LTR ERVL -12 507 1 709 83 21 0 chr4 7515941 7516037 -176772625 - AluJo SINE Alu -176 136 39 321 269 0 0 chr4 7516346 7516413 -176772249 + MIR SINE MIR 86 152 -110 2152 181 55 22 chr4 7518155 7518607 -176770055 - MLT1C LTR MaLR 0 467 1 190 361 46 0 chr4 7519380 7519510 -176769152 + L2 LINE L2 2801 2936 -378 240 276 168 22 chr4 7519510 7519695 -176768967 + LTR16A1 LTR ERVL 1 212 -245 826 208 34 5 chr4 7519837 7520044 -176768618 + LTR16A1 LTR ERVL 245 457 0 419 261 125 33 chr4 7520091 7520275 -176768387 + L2 LINE L2 3006 3206 -107 288 204 159 21 chr4 7520438 7520583 -176768079 - MIR SINE MIR -57 205 38 21 36 0 0 chr4 7520771 7520799 -176767863 + AT_rich Low_complexity Low_complexity 1 28 0 540 201 37 0 chr4 7521618 7521737 -176766925 + MER63 DNA MER1_type 679 1653 -35 2126 115 3 6 chr4 7522794 7523107 -176765555 - AluSx SINE Alu 0 312 1 181 167 0 48 chr4 7523255 7523297 -176765365 + L2 LINE L2 3014 3053 -219 370 312 64 57 chr4 7523366 7523664 -176764998 - L2 LINE L2 -1 3312 3013 2507 62 0 0 chr4 7524853 7525162 -176763500 - AluY SINE Alu -2 309 1 207 335 81 25 chr4 7525169 7525330 -176763332 + L2 LINE L2 2549 2718 -596 3730 136 62 0 chr4 7525447 7526045 -176762617 - LTR24C LTR ERV1 0 635 1 198 103 0 0 chr4 7526991 7527020 -176761642 + (A)n Simple_repeat Simple_repeat 1 29 0 286 285 8 39 chr4 7527501 7527631 -176761031 + (TATATG)n Simple_repeat Simple_repeat 1 126 0 406 279 66 0 chr4 7527651 7527773 -176760889 - MIR SINE MIR -48 214 85 376 265 15 45 chr4 7527835 7527967 -176760695 - MIR SINE MIR -74 188 61 185 270 0 81 chr4 7528103 7528177 -176760485 + MIR SINE MIR 115 182 -80 2301 151 27 117 chr4 7528530 7528975 -176759687 - MLT2B2 LTR ERVL -2 513 128 1858 135 10 7 chr4 7528975 7529271 -176759391 + AluSx SINE Alu 6 302 -10 2301 151 27 117 chr4 7529271 7529389 -176759273 - MLT2B2 LTR ERVL -387 128 1 228 245 19 47 chr4 7529825 7529931 -176758731 + CT-rich Low_complexity Low_complexity 4 106 0 661 223 7 7 chr4 7530832 7530971 -176757691 + MIR SINE MIR 35 173 -89 1057 269 56 6 chr4 7531063 7531405 -176757257 - L1MEc LINE L1 -5453 943 585 308 205 103 13 chr4 7531419 7531497 -176757165 - L1M4 LINE L1 -3317 2829 2745 352 95 16 16 chr4 7532231 7532294 -176756368 + (TCTA)n Simple_repeat Simple_repeat 3 65 0 311 133 22 0 chr4 7532294 7532339 -176756323 - Tigger2 DNA MER2_type -14 2704 2659 308 299 35 75 chr4 7532342 7532516 -176756146 + L1MEc LINE L1 266 432 -5964 2266 109 48 24 chr4 7532534 7532909 -176755753 - Tigger2 DNA MER2_type -54 2664 2281 2375 144 31 2 chr4 7532915 7533331 -176755331 - L1MA4A LINE L1 -6 6297 5870 399 183 0 14 chr4 7533341 7533412 -176755250 + MER8 DNA MER2_type 170 239 0 450 316 58 0 chr4 7533453 7533627 -176755035 - L1MC4a LINE L1 -1947 5861 5678 497 275 6 2 chr4 7533653 7533794 -176754868 - MIR SINE MIR -43 165 22 225 316 51 0 chr4 7534487 7534585 -176754077 + L2 LINE L2 2737 2839 -475 737 232 29 77 chr4 7534696 7535045 -176753617 - HAL1 LINE L1 0 2507 2176 1944 156 97 33 chr4 7535195 7535587 -176753075 - LTR59 LTR ERV1 -172 425 9 43506 35 23 1 chr4 7535589 7541602 -176747060 - L1PA3 LINE L1 -10 6145 1 303 28 0 0 chr4 7541667 7541703 -176746959 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 769 282 45 48 chr4 7541725 7542080 -176746582 - L2 LINE L2 -383 2931 2578 221 316 74 0 chr4 7542147 7542242 -176746420 + MIR SINE MIR 150 251 -11 2123 115 3 0 chr4 7542248 7542544 -176746118 + AluSx SINE Alu 1 297 -15 2616 113 6 6 chr4 7542736 7543100 -176745562 - THE1B LTR MaLR 0 364 1 1666 259 58 25 chr4 7543591 7544121 -176744541 - MER77 LTR ERV1 -4 601 54 2020 118 3 7 chr4 7544401 7544705 -176743957 + AluSx SINE Alu 1 303 -9 2626 170 41 12 chr4 7544755 7545244 -176743418 - MLT1D LTR MaLR -1 504 2 203 0 0 36 chr4 7545550 7545578 -176743084 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 2097 75 18 0 chr4 7545585 7545865 -176742797 - AluY SINE Alu -26 285 1 238 314 17 25 chr4 7546000 7546118 -176742544 + MIR3 SINE MIR 4 120 -88 525 285 90 70 chr4 7546501 7546813 -176741849 + L2 LINE L2 2955 3272 0 498 289 119 50 chr4 7546908 7547267 -176741395 - MLT1H LTR MaLR -16 533 40 221 154 0 26 chr4 7547861 7547900 -176740762 + CT-rich Low_complexity Low_complexity 2 39 0 381 270 108 14 chr4 7548056 7548204 -176740458 - MIR SINE MIR -1 261 100 335 299 92 49 chr4 7548906 7549090 -176739572 - L1ME3A LINE L1 -8 6145 5954 1290 217 72 6 chr4 7549165 7549497 -176739165 - L1ME3A LINE L1 -221 5932 5579 497 212 20 34 chr4 7549513 7549659 -176739003 - L1ME3A LINE L1 -1545 4584 4441 * 641 217 41 52 chr4 7549647 7550008 -176738654 - L1ME3A LINE L1 -2088 4041 2315 237 65 0 0 chr4 7550042 7550073 -176738589 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 243 77 0 231 chr4 7550132 7550210 -176738452 + MIR SINE MIR 79 138 -124 894 273 39 84 chr4 7550210 7550927 -176737735 - L1ME3A LINE L1 -4905 1214 530 12982 24 0 1 chr4 7551508 7553860 -176734802 - L1PA3 LINE L1 -2 6153 3803 350 47 0 4 chr4 7553860 7553917 -176734745 + L1PA3 LINE L1 3753 3808 -2338 405 290 147 39 chr4 7554020 7554251 -176734411 + MIR SINE MIR 5 260 -2 195 268 37 49 chr4 7554225 7554307 -176734355 - L2 LINE L2 -4 3268 3188 * 1888 189 40 5 chr4 7554405 7554785 -176733877 - MER68 LTR ERV1 -4 558 166 1758 166 35 10 chr4 7555223 7555513 -176733149 + AluJb SINE Alu 1 297 -15 2195 126 13 3 chr4 7555734 7556043 -176732619 - AluSx SINE Alu 0 312 1 1115 31 15 0 chr4 7556058 7556188 -176732474 - AluY SINE Alu -6 305 174 279 0 0 0 chr4 7556205 7556236 -176732426 + (A)n Simple_repeat Simple_repeat 1 31 0 269 214 0 11 chr4 7556745 7556834 -176731828 + (TG)n Simple_repeat Simple_repeat 1 88 0 264 279 0 0 chr4 7556892 7557003 -176731659 + (TG)n Simple_repeat Simple_repeat 1 111 0 202 320 13 0 chr4 7557014 7557089 -176731573 + (TG)n Simple_repeat Simple_repeat 1 76 0 255 284 77 27 chr4 7557584 7557767 -176730895 + HAL1 LINE L1 2226 2417 -90 1689 202 152 5 chr4 7557827 7558262 -176730400 + MLT1D LTR MaLR 7 505 0 2276 99 13 7 chr4 7558273 7558575 -176730087 - AluSx SINE Alu -8 304 1 251 320 74 16 chr4 7559304 7559426 -176729236 + L2 LINE L2 3136 3264 -8 255 282 103 43 chr4 7559523 7559640 -176729022 + MER5B DNA MER1_type 54 177 -1 2594 57 3 0 chr4 7560259 7560558 -176728104 + AluY SINE Alu 1 300 -11 1840 192 93 25 chr4 7560888 7561361 -176727301 + MLT1D LTR MaLR 1 505 0 282 279 15 0 chr4 7561408 7561476 -176727186 + MIR SINE MIR 7 75 -187 740 254 121 4 chr4 7561560 7561800 -176726862 + L2 LINE L2 1933 2200 -1114 1149 230 7 35 chr4 7561807 7562090 -176726572 - MLT1E LTR MaLR 0 593 319 946 263 207 0 chr4 7562090 7562482 -176726180 + L2 LINE L2 2235 2707 -607 956 140 92 0 chr4 7562502 7562666 -176725996 - MER30 DNA MER1_type -51 179 1 392 270 162 7 chr4 7562678 7562826 -176725836 + MER104 DNA Tc2 1 171 -9 470 262 92 19 chr4 7562830 7563141 -176725521 + L2 LINE L2 2704 3102 -211 2167 139 0 0 chr4 7563566 7563868 -176724794 + AluSx SINE Alu 1 302 -10 248 242 21 84 chr4 7564251 7564346 -176724316 + MIR SINE MIR 8 96 -166 357 233 69 80 chr4 7564405 7564478 -176724184 + L1MEd LINE L1 859 931 -5188 2186 99 13 20 chr4 7564478 7564780 -176723882 + AluSx SINE Alu 1 300 -12 357 233 69 80 chr4 7564780 7564968 -176723694 + L1MEd LINE L1 931 1117 -5002 756 236 51 25 chr4 7565294 7565531 -176723131 + MER90 LTR ERV1 1 243 -332 277 247 74 0 chr4 7565593 7565674 -176722988 + MER90 LTR ERV1 528 614 0 337 283 91 11 chr4 7565912 7566099 -176722563 + L1MEd LINE L1 2196 2397 -3732 255 280 53 33 chr4 7566114 7566264 -176722398 + L1MEd LINE L1 2452 2604 -3525 630 306 73 48 chr4 7566308 7567208 -176721454 + L1M4 LINE L1 4202 5132 -1014 336 221 52 0 chr4 7567499 7567576 -176721086 + MIR SINE MIR 95 175 -87 502 162 110 7 chr4 7567590 7567726 -176720936 - L1MB7 LINE L1 0 6184 6035 375 253 0 57 chr4 7568140 7568253 -176720409 - L1MC4 LINE L1 -1334 6988 1977 188 210 12 0 chr4 7568255 7568336 -176720326 + (TA)n Simple_repeat Simple_repeat 1 82 0 2196 128 0 13 chr4 7568336 7568640 -176720022 - AluSx SINE Alu -12 300 1 3091 117 42 16 chr4 7568673 7569179 -176719483 - L1PA16 LINE L1 -2 6164 5646 2170 131 3 3 chr4 7569299 7569605 -176719057 + AluSx SINE Alu 1 306 -6 226 269 29 39 chr4 7569644 7569748 -176718914 - L1PBa LINE L1 -3902 2961 2859 531 307 84 14 chr4 7569763 7570274 -176718388 - L1MC4 LINE L1 -4913 1503 1012 1613 195 48 11 chr4 7571280 7571655 -176717007 - MLT1B LTR MaLR -1 389 1 303 299 0 0 chr4 7571839 7571916 -176716746 - MIR SINE MIR -178 84 8 327 268 164 18 chr4 7572113 7572306 -176716356 + MIR SINE MIR 33 250 -12 218 343 20 10 chr4 7572779 7572878 -176715784 + MIR SINE MIR 45 144 -118 261 250 47 0 chr4 7573009 7573073 -176715589 - MIR SINE MIR -109 99 33 2359 109 3 0 chr4 7573989 7574300 -176714362 + AluSx SINE Alu 1 312 0 227 299 0 15 chr4 7575199 7575266 -176713396 - MLT1J LTR MaLR -202 309 244 2200 112 27 3 chr4 7575322 7575618 -176713044 + AluSx SINE Alu 1 303 -9 235 252 216 18 chr4 7575626 7575737 -176712925 - MLT1L LTR MaLR -355 260 128 3467 121 17 6 chr4 7576306 7576827 -176711835 - MER1A DNA MER1_type 0 527 1 196 277 31 0 chr4 7577399 7577464 -176711198 + MIR3 SINE MIR 88 154 -54 342 190 0 0 chr4 7577800 7577858 -176710804 + MER94 DNA DNA 54 111 -23 2262 109 10 0 chr4 7577869 7578163 -176710499 - AluSx SINE Alu -15 297 1 369 286 27 0 chr4 7579064 7579176 -176709486 - LTR16C LTR ERVL -2 489 375 287 281 86 29 chr4 7579214 7579353 -176709309 - MLT1E2 LTR MaLR -37 589 443 308 291 34 56 chr4 7579450 7579629 -176709033 - MER5A DNA MER1_type -5 184 10 4580 137 27 23 chr4 7579817 7580010 -176708652 - L1PB4 LINE L1 0 6156 5965 2397 82 7 7 chr4 7580010 7580304 -176708358 - AluSx SINE Alu -18 294 1 4580 137 27 23 chr4 7580304 7580933 -176707729 - L1PB4 LINE L1 -191 5965 5331 302 284 90 26 chr4 7581011 7581166 -176707496 + L2 LINE L2 3149 3313 0 229 191 0 0 chr4 7581166 7581213 -176707449 + GA-rich Low_complexity Low_complexity 2 48 0 392 143 12 0 chr4 7582038 7582122 -176706540 + CT-rich Low_complexity Low_complexity 2 86 0 358 250 176 0 chr4 7582901 7583049 -176705613 - MIR SINE MIR -13 249 76 180 246 146 18 chr4 7583098 7583208 -176705454 + MIR SINE MIR 23 146 -62 491 279 19 13 chr4 7583579 7583737 -176704925 + MIR3 SINE MIR 44 202 -6 185 206 0 0 chr4 7583775 7583809 -176704853 + MIR SINE MIR 116 149 -113 398 286 8 15 chr4 7583984 7584117 -176704545 + MIR3 SINE MIR 12 143 -65 618 264 56 0 chr4 7586592 7586770 -176701892 - MER20 DNA MER1_type -1 218 31 1893 92 7 33 chr4 7587157 7587428 -176701234 - AluSg SINE Alu -46 264 1 690 258 154 27 chr4 7588897 7589196 -176699466 - MER69 DNA AcHobo -2184 342 6 991 208 59 24 chr4 7589196 7589451 -176699211 - LTR48B LTR ERV1 0 644 381 351 314 33 8 chr4 7589945 7590066 -176698596 - MER5A DNA MER1_type -3 186 63 593 290 67 37 chr4 7590191 7590491 -176698171 + LTR16B LTR ERVL 1 309 -155 411 163 8 39 chr4 7590492 7590621 -176698041 + CT-rich Low_complexity Low_complexity 1 125 0 399 234 47 58 chr4 7590624 7590795 -176697867 + LTR16B LTR ERVL 292 460 -4 1998 111 71 31 chr4 7591910 7592260 -176696402 + THE1B LTR MaLR 1 364 0 2462 134 7 34 chr4 7592379 7592789 -176695873 + MSTC LTR MaLR 30 428 0 604 274 50 5 chr4 7592925 7593126 -176695536 + L1M4 LINE L1 4848 5057 -1089 397 171 9 117 chr4 7593130 7593241 -176695421 + MLT1D LTR MaLR 1 99 -406 658 190 23 81 chr4 7593925 7594099 -176694563 + MIR SINE MIR 8 171 -91 423 226 0 0 chr4 7594165 7594267 -176694395 + (CACCAT)n Simple_repeat Simple_repeat 4 105 0 506 324 67 17 chr4 7596054 7596292 -176692370 - MIR SINE MIR -10 252 3 225 315 0 0 chr4 7596311 7596365 -176692297 + (TG)n Simple_repeat Simple_repeat 1 54 0 2049 160 102 19 chr4 7596602 7597014 -176691648 + MER83 LTR ERV1 3 448 0 392 301 77 32 chr4 7597017 7597173 -176691489 + MIR3 SINE MIR 42 204 -4 2114 151 83 2 chr4 7597380 7597777 -176690885 + MSTB1 LTR MaLR 4 432 0 220 200 0 0 chr4 7598405 7598445 -176690217 + CT-rich Low_complexity Low_complexity 2 41 0 583 275 63 5 chr4 7598470 7598659 -176690003 + MER58C DNA MER1_type 1 200 -15 210 246 105 44 chr4 7598894 7599008 -176689654 + MIR SINE MIR 102 222 -40 338 231 13 13 chr4 7599698 7599854 -176688808 + (CA)n Simple_repeat Simple_repeat 1 156 0 231 259 0 0 chr4 7599985 7600070 -176688592 + (CA)n Simple_repeat Simple_repeat 2 86 0 306 308 45 8 chr4 7600191 7600324 -176688338 - LTR16C LTR ERVL -2 489 352 435 244 6 11 chr4 7601500 7601676 -176686986 + (CA)n Simple_repeat Simple_repeat 1 175 0 188 167 0 48 chr4 7602272 7602314 -176686348 - MIR SINE MIR -63 145 106 335 251 78 18 chr4 7602659 7602826 -176685836 - L1ME4a LINE L1 -240 5881 5705 227 340 19 0 chr4 7602961 7603064 -176685598 - L1ME4a LINE L1 -473 5648 5544 1188 131 0 0 chr4 7603164 7603332 -176685330 + AluSg/x SINE Alu 137 304 -8 361 332 123 25 chr4 7603570 7603805 -176684857 - L1MC4a LINE L1 -1903 5905 5648 359 283 117 55 chr4 7603817 7604142 -176684520 - L1MC4a LINE L1 -2187 5621 5277 462 305 100 59 chr4 7604166 7604710 -176683952 - L1MC4a LINE L1 -893 5253 4673 1791 153 50 10 chr4 7604868 7605168 -176683494 - AluJo SINE Alu 0 312 1 2142 162 45 8 chr4 7605855 7606256 -176682406 + L1MB7 LINE L1 5752 6167 -17 1464 229 67 27 chr4 7606719 7607081 -176681581 + MLT1C LTR MaLR 1 386 -81 2858 13 0 0 chr4 7607081 7607387 -176681275 - AluYa5 SINE Alu -5 306 1 1464 229 67 27 chr4 7607387 7607473 -176681189 + MLT1C LTR MaLR 386 467 0 335 269 92 17 chr4 7607478 7607597 -176681065 + MIR SINE MIR 108 235 -27 2434 57 3 10 chr4 7607684 7607980 -176680682 + AluY SINE Alu 1 294 -17 2050 195 20 15 chr4 7608143 7608537 -176680125 + MSTD LTR MaLR 1 396 0 254 125 21 0 chr4 7609594 7609642 -176679020 + GA-rich Low_complexity Low_complexity 2 50 0 2015 117 25 18 chr4 7611269 7611623 -176677039 + AluSq SINE Alu 1 356 0 701 283 211 24 chr4 7611750 7612635 -176676027 - L2 LINE L2 0 3313 2269 284 339 9 9 chr4 7612697 7612812 -176675850 + L2 LINE L2 2947 3061 -211 952 229 138 14 chr4 7613936 7614285 -176674377 - LTR16C LTR ERVL -2 489 98 763 225 35 0 chr4 7614439 7614612 -176674050 + MER3 DNA MER1_type 19 197 -12 257 214 0 18 chr4 7614668 7614724 -176673938 + MIR SINE MIR 96 150 -112 726 228 85 5 chr4 7614805 7615016 -176673646 + MER33 DNA MER1_type 1 228 -96 290 276 69 17 chr4 7615552 7615668 -176672994 - MER5C DNA MER1_type -202 122 1 2007 132 23 23 chr4 7615820 7615939 -176672723 + AluSx SINE Alu 1 119 -193 2022 72 4 0 chr4 7615939 7616188 -176672474 + AluY SINE Alu 61 310 -1 2007 132 23 23 chr4 7616188 7616378 -176672284 + AluSx SINE Alu 118 310 -2 537 161 0 0 chr4 7616492 7616622 -176672040 + (CA)n Simple_repeat Simple_repeat 1 130 0 290 239 92 46 chr4 7617111 7617241 -176671421 - MIR3 SINE MIR -10 198 63 469 318 44 12 chr4 7617506 7617708 -176670954 + MIR SINE MIR 44 250 -12 28 29 0 0 chr4 7617870 7617905 -176670757 + AT_rich Low_complexity Low_complexity 1 35 0 294 280 30 8 chr4 7618470 7618602 -176670060 + HAL1 LINE L1 102 236 -2271 951 301 31 29 chr4 7618676 7619061 -176669601 + L1ME3A LINE L1 5564 5949 -221 1171 257 111 36 chr4 7619063 7619615 -176669047 + MLT1E LTR MaLR 1 593 0 2105 137 0 10 chr4 7619921 7620221 -176668441 + AluSx SINE Alu 1 297 -15 251 314 66 0 chr4 7620341 7620462 -176668200 + MLT1E-int LTR MaLR 725 853 -518 1948 116 6 75 chr4 7620504 7620822 -176667840 - AluSx SINE Alu -16 296 1 734 297 81 48 chr4 7620929 7621326 -176667336 + MLT1E-int LTR MaLR 961 1370 -1 426 292 0 8 chr4 7621327 7621447 -176667215 + MLT1E LTR MaLR 3 121 -472 519 294 119 0 chr4 7621618 7621795 -176666867 + MIR SINE MIR 31 228 -34 225 301 204 28 chr4 7621858 7622055 -176666607 + L2 LINE L2 2413 2574 -740 1445 128 26 148 chr4 7622055 7622399 -176666263 - AluYb8 SINE Alu -5 303 2 225 301 204 28 chr4 7622399 7622490 -176666172 + L2 LINE L2 2574 2752 -562 285 258 197 56 chr4 7622497 7622531 -176666131 - MIR SINE MIR -28 234 206 1271 184 76 65 chr4 7622531 7622901 -176665761 - MLT1A2 LTR MaLR 0 374 1 285 258 197 56 chr4 7622901 7623064 -176665598 - MIR SINE MIR -56 206 9 272 273 220 8 chr4 7624492 7624624 -176664038 - MIR SINE MIR -34 228 69 283 366 99 12 chr4 7624931 7625092 -176663570 - MER5B DNA MER1_type -1 177 3 200 288 51 34 chr4 7625130 7625248 -176663414 - MIR SINE MIR -72 136 17 975 154 7 0 chr4 7625624 7625929 -176662733 + GA-rich Low_complexity Low_complexity 1 307 0 350 261 126 18 chr4 7626124 7626235 -176662427 + MIR3 SINE MIR 39 161 -47 240 283 0 0 chr4 7626373 7626426 -176662236 + polypyrimidine Low_complexity Low_complexity 3 55 0 407 211 13 0 chr4 7626431 7626507 -176662155 - L2 LINE L2 0 3272 3196 1993 127 32 0 chr4 7627042 7627326 -176661336 + AluSx SINE Alu 5 297 -15 2364 192 24 10 chr4 7627338 7627837 -176660825 + L1MA8 LINE L1 5485 5990 -301 1454 147 65 47 chr4 7628163 7628442 -176660220 - AluJb SINE Alu -18 294 11 844 283 110 13 chr4 7628498 7629014 -176659648 + L1ME4a LINE L1 5313 5891 -230 433 315 108 50 chr4 7629439 7629801 -176658861 - L2 LINE L2 -63 3209 2827 392 235 9 0 chr4 7630273 7630388 -176658274 + (CACCAT)n Simple_repeat Simple_repeat 4 119 0 62 0 0 0 chr4 7631959 7632021 -176656641 + AT_rich Low_complexity Low_complexity 1 62 0 2158 60 4 19 chr4 7632028 7632296 -176656366 + AluY SINE Alu 1 264 -47 426 274 81 0 chr4 7632313 7632437 -176656225 + AluJb SINE Alu 164 297 -15 240 35 0 0 chr4 7634206 7634235 -176654427 + (TG)n Simple_repeat Simple_repeat 1 29 0 777 229 7 76 chr4 7634249 7634524 -176654138 - AluSp SINE Alu -31 282 27 215 288 34 0 chr4 7636130 7636189 -176652473 + MIR SINE MIR 129 189 -73 2436 211 60 11 chr4 7637175 7637272 -176651390 - L1 LINE L1 -2472 3674 3583 2281 107 0 0 chr4 7637272 7637561 -176651101 + AluSg SINE Alu 1 289 -21 2436 211 60 11 chr4 7637561 7638132 -176650530 - L1 LINE L1 -2563 3583 2973 5316 62 11 33 chr4 7638477 7639183 -176649479 + LTR8 LTR ERV1 1 691 0 318 305 17 17 chr4 7639263 7639381 -176649281 - MER5B DNA MER1_type -58 120 3 538 208 12 17 chr4 7640817 7640990 -176647672 + (CCA)n Simple_repeat Simple_repeat 2 173 0 * 669 189 11 11 chr4 7640947 7641127 -176647535 + (CAT)n Simple_repeat Simple_repeat 1 180 0 308 162 0 15 chr4 7641176 7641244 -176647418 + (CAT)n Simple_repeat Simple_repeat 1 67 0 740 295 59 8 chr4 7641244 7641481 -176647181 - MIR SINE MIR -1 261 13 217 410 8 22 chr4 7641502 7641636 -176647026 - L3b LINE CR1 -8 1575 1444 * 703 292 226 33 chr4 7641626 7642738 -176645924 + L2 LINE L2 1729 3053 -219 203 278 37 0 chr4 7642878 7642932 -176645730 + L2 LINE L2 3212 3267 -5 235 293 69 26 chr4 7643029 7643145 -176645517 - MIR SINE MIR -68 140 20 443 293 43 27 chr4 7643205 7643393 -176645269 - MIR SINE MIR -44 218 28 238 143 24 0 chr4 7643897 7643939 -176644723 + MLT1J2 LTR MaLR 100 142 -308 355 198 128 0 chr4 7644223 7644309 -176644353 + MIR SINE MIR 70 166 -96 30 27 0 0 chr4 7644486 7644523 -176644139 + AT_rich Low_complexity Low_complexity 1 37 0 538 282 116 33 chr4 7645000 7645241 -176643421 - L2 LINE L2 -1 3271 3011 1565 156 15 30 chr4 7646531 7646800 -176641862 - AluJo SINE Alu -13 299 35 216 97 0 0 chr4 7646821 7646852 -176641810 + (T)n Simple_repeat Simple_repeat 1 31 0 464 313 65 18 chr4 7646951 7647168 -176641494 - MIR SINE MIR -34 228 2 394 318 43 27 chr4 7648371 7648629 -176640033 - L2 LINE L2 -177 3095 2834 2289 78 3 10 chr4 7649061 7649357 -176639305 + AluSc SINE Alu 1 294 -15 519 294 119 0 chr4 7649617 7649794 -176638868 - MIR SINE MIR -34 228 31 426 292 0 8 chr4 7649965 7650085 -176638577 - MLT1E LTR MaLR -472 121 3 734 297 81 48 chr4 7650086 7650483 -176638179 - MLT1E-int LTR MaLR -1 1370 961 2018 107 6 75 chr4 7650590 7650908 -176637754 + AluSx SINE Alu 1 296 -16 251 314 66 0 chr4 7650950 7651071 -176637591 - MLT1E-int LTR MaLR -518 853 725 239 172 0 52 chr4 7651191 7651249 -176637413 - Alu SINE Alu -5 296 242 693 201 6 11 chr4 7651481 7651660 -176637002 + (CCA)n Simple_repeat Simple_repeat 1 178 0 313 189 0 45 chr4 7651655 7651766 -176636896 + (CACCAT)n Simple_repeat Simple_repeat 1 106 0 * 713 183 11 11 chr4 7651766 7651946 -176636716 + (CCA)n Simple_repeat Simple_repeat 1 180 0 432 218 6 26 chr4 7651950 7652106 -176636556 + (CACCAT)n Simple_repeat Simple_repeat 4 156 0 308 162 0 15 chr4 7652155 7652223 -176636439 + (CAT)n Simple_repeat Simple_repeat 1 67 0 740 295 59 8 chr4 7652223 7652460 -176636202 - MIR SINE MIR -1 261 13 217 410 8 22 chr4 7652481 7652615 -176636047 - L3b LINE CR1 -8 1575 1444 * 540 296 224 31 chr4 7652605 7653717 -176634945 + L2 LINE L2 1729 3053 -219 192 278 37 0 chr4 7653857 7653911 -176634751 + L2 LINE L2 3212 3267 -5 215 293 69 26 chr4 7654008 7654124 -176634538 - MIR SINE MIR -68 140 20 414 293 43 27 chr4 7654184 7654372 -176634290 - MIR SINE MIR -44 218 28 240 200 20 0 chr4 7654868 7654918 -176633744 + MLT1J2 LTR MaLR 92 142 -308 334 198 128 0 chr4 7655202 7655288 -176633374 + MIR SINE MIR 70 166 -96 30 27 0 0 chr4 7655465 7655502 -176633160 + AT_rich Low_complexity Low_complexity 1 37 0 476 282 116 33 chr4 7655979 7656220 -176632442 - L2 LINE L2 -1 3271 3011 1571 156 15 30 chr4 7657510 7657779 -176630883 - AluJo SINE Alu -13 299 35 216 97 0 0 chr4 7657800 7657831 -176630831 + (T)n Simple_repeat Simple_repeat 1 31 0 433 313 65 18 chr4 7657930 7658147 -176630515 - MIR SINE MIR -34 228 2 427 293 36 28 chr4 7659359 7659608 -176629054 - L2 LINE L2 -188 3084 2834 2375 80 3 7 chr4 7660040 7660341 -176628321 + AluSc SINE Alu 1 300 -9 1260 163 38 129 chr4 7660369 7660797 -176627865 + MLT1B LTR MaLR 2 374 0 475 269 54 81 chr4 7661517 7661740 -176626922 - L1MC5 LINE L1 -30 7931 7715 303 140 40 0 chr4 7661771 7661821 -176626841 + MER75 DNA T2_type 453 504 0 303 313 42 50 chr4 7661821 7662080 -176626582 - L1MC5 LINE L1 -253 7708 7452 189 0 0 0 chr4 7662608 7662629 -176626033 + (CA)n Simple_repeat Simple_repeat 2 22 0 432 37 0 0 chr4 7662954 7663008 -176625654 + (TA)n Simple_repeat Simple_repeat 1 54 0 2441 86 0 0 chr4 7663009 7663301 -176625361 - AluY SINE Alu -19 292 1 520 355 4 18 chr4 7663316 7663589 -176625073 - L1ME LINE L1 -301 5820 5552 1922 179 0 3 chr4 7663640 7663948 -176624714 - AluJo SINE Alu 0 312 6 217 214 62 107 chr4 7664022 7664101 -176624561 - L2 LINE L2 -60 3212 3138 2479 77 6 6 chr4 7664101 7664412 -176624250 + AluY SINE Alu 1 311 0 217 214 62 107 chr4 7664412 7664444 -176624218 - L2 LINE L2 -134 3138 3106 310 354 79 0 chr4 7664459 7664623 -176624039 - LTR16C LTR ERVL -26 465 289 213 261 99 49 chr4 7664730 7664872 -176623790 + L2 LINE L2 2701 2849 -465 390 227 0 11 chr4 7665177 7665265 -176623397 + L2 LINE L2 3186 3272 -41 2312 83 0 35 chr4 7666079 7666393 -176622269 + AluY SINE Alu 1 303 -8 252 333 34 0 chr4 7666396 7666513 -176622149 + MER103 DNA DNA 31 151 -15 184 239 130 33 chr4 7666652 7666744 -176621918 - MIR SINE MIR -78 130 30 22 0 0 0 chr4 7666985 7667007 -176621655 + AT_rich Low_complexity Low_complexity 1 22 0 2469 72 0 0 chr4 7667105 7667396 -176621266 + AluSx SINE Alu 1 291 -21 271 252 216 18 chr4 7667554 7667665 -176620997 + MIR SINE MIR 18 150 -112 266 320 105 63 chr4 7667798 7668034 -176620628 - L2 LINE L2 -75 3197 2941 2312 109 87 32 chr4 7668034 7668438 -176620224 - MSTA LTR MaLR 0 428 3 266 320 105 63 chr4 7668438 7668535 -176620127 - L2 LINE L2 -331 2941 2850 442 283 25 6 chr4 7668760 7668919 -176619743 + L1ME LINE L1 5566 5727 -394 437 290 24 12 chr4 7669330 7669499 -176619163 + GA-rich Low_complexity Low_complexity 5 175 0 191 283 9 88 chr4 7670252 7670365 -176618297 - L2 LINE L2 -237 3035 2932 2492 74 0 3 chr4 7670571 7670867 -176617795 + AluY SINE Alu 1 295 -16 353 232 181 36 chr4 7672732 7672919 -176615743 - MIR SINE MIR -11 251 34 199 189 0 0 chr4 7672992 7673029 -176615633 + MIR SINE MIR 112 148 -114 301 265 225 0 chr4 7673351 7673502 -176615160 + MIR SINE MIR 40 224 -38 281 308 0 33 chr4 7673725 7673816 -176614846 + L2 LINE L2 2673 2760 -554 426 278 49 0 chr4 7674198 7674342 -176614320 + MIR SINE MIR 73 223 -39 244 231 0 0 chr4 7674556 7674608 -176614054 + A-rich Low_complexity Low_complexity 4 55 0 542 286 164 8 chr4 7674623 7674885 -176613777 + L3 LINE CR1 1163 1465 -112 340 333 84 37 chr4 7676877 7677150 -176611512 + MLT1I LTR MaLR 98 383 -26 673 257 53 57 chr4 7677179 7677424 -176611238 - MIR SINE MIR 0 262 19 365 318 20 27 chr4 7677490 7677638 -176611024 - MIR3 SINE MIR -15 193 47 360 119 0 0 chr4 7677923 7677982 -176610680 + (TTCC)n Simple_repeat Simple_repeat 4 62 0 2256 97 7 3 chr4 7677993 7678281 -176610381 - AluSx SINE Alu -3 309 21 225 0 0 0 chr4 7678356 7678381 -176610281 + (CA)n Simple_repeat Simple_repeat 2 26 0 311 222 8 0 chr4 7679079 7679196 -176609466 + (CA)n Simple_repeat Simple_repeat 2 119 0 226 325 40 53 chr4 7679240 7679391 -176609271 + MIR SINE MIR 44 192 -70 222 191 0 0 chr4 7679985 7680027 -176608635 - MIR SINE MIR -113 149 108 27 0 0 0 chr4 7682897 7682924 -176605738 + GC_rich Low_complexity Low_complexity 1 27 0 225 132 57 19 chr4 7683317 7683370 -176605292 + (CCCCG)n Simple_repeat Simple_repeat 2 56 0 292 300 22 11 chr4 7684605 7684695 -176603967 - MIR3 SINE MIR -50 158 68 207 294 0 0 chr4 7685617 7685668 -176602994 - MIR SINE MIR -61 147 97 456 19 0 0 chr4 7685865 7685918 -176602744 + (CA)n Simple_repeat Simple_repeat 1 53 0 219 267 0 0 chr4 7686565 7686625 -176602037 + MIR SINE MIR 30 89 -119 195 255 21 0 chr4 7686836 7686883 -176601779 + L2 LINE L2 3266 3313 0 190 291 45 64 chr4 7688411 7688521 -176600141 - MIR SINE MIR -71 191 84 249 359 132 6 chr4 7688999 7689158 -176599504 - L3 LINE CR1 -3 1574 1396 717 247 67 9 chr4 7689257 7689480 -176599182 - MIR SINE MIR -15 247 12 195 374 17 35 chr4 7690478 7690593 -176598069 - MIR SINE MIR -62 146 34 1956 210 62 12 chr4 7690638 7691119 -176597543 + MLT1D LTR MaLR 1 505 0 276 300 120 0 chr4 7692157 7692257 -176596405 - MIR SINE MIR -132 130 19 575 265 18 6 chr4 7693418 7693588 -176595074 - MER5B DNA MER1_type -3 175 4 380 220 31 101 chr4 7694372 7694531 -176594131 + MIR3 SINE MIR 53 200 -8 282 328 72 0 chr4 7695047 7695172 -176593490 - MIR SINE MIR -97 165 32 360 268 9 36 chr4 7695684 7695796 -176592866 + L2 LINE L2 3205 3313 0 290 374 0 39 chr4 7696219 7696374 -176592288 - MIR SINE MIR -2 260 112 339 316 12 65 chr4 7696463 7696648 -176592014 - MIR3 SINE MIR -54 154 12 246 296 35 35 chr4 7696635 7696750 -176591912 + MIR3 SINE MIR 48 162 -46 * 539 226 57 31 chr4 7696858 7697017 -176591645 - Charlie8 DNA MER1_type -2183 234 72 2580 164 15 4 chr4 7697023 7697494 -176591168 + L1MB3 LINE L1 5677 6152 -31 246 159 0 0 chr4 7697505 7697549 -176591113 - L1MB3 LINE L1 -33 6150 6107 259 289 24 24 chr4 7697552 7697635 -176591027 - Charlie8 DNA MER1_type -2322 95 13 272 283 142 0 chr4 7698227 7698340 -176590322 - MIR SINE MIR -63 145 17 310 314 59 13 chr4 7698711 7698864 -176589798 - MIR SINE MIR -41 221 62 296 235 31 41 chr4 7699401 7699499 -176589163 + Charlie4 DNA MER1_type 1860 1956 -5 225 327 67 53 chr4 7699542 7699692 -176588970 - L2 LINE L2 0 3313 3162 186 267 307 0 chr4 7700010 7700111 -176588551 - L2 LINE L2 -225 3047 2916 373 305 26 19 chr4 7700583 7700737 -176587925 - MER5A DNA MER1_type 0 189 35 392 305 65 5 chr4 7701150 7701350 -176587312 + L1MEd LINE L1 848 1059 -5060 522 259 45 77 chr4 7701362 7701582 -176587080 - L2 LINE L2 -225 3088 2876 304 294 73 0 chr4 7701588 7701724 -176586938 + L3 LINE CR1 1257 1402 -175 252 59 0 0 chr4 7701724 7701758 -176586904 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 381 291 86 32 chr4 7701771 7701991 -176586671 - L2 LINE L2 0 3313 3082 313 318 95 26 chr4 7702634 7702939 -176585723 + L2 LINE L2 2571 2896 -418 4290 173 9 0 chr4 7703021 7703815 -176584847 - L1 LINE L1 -809 5337 4537 2515 61 13 13 chr4 7704594 7704905 -176583757 - AluY SINE Alu 0 311 1 214 405 69 15 chr4 7704975 7705106 -176583556 - L3 LINE CR1 -85 1492 1355 281 114 0 0 chr4 7705389 7705442 -176583220 + MER63A DNA MER1_type 1 53 -157 2373 89 0 10 chr4 7705467 7705771 -176582891 + AluSc SINE Alu 6 306 -3 506 228 57 20 chr4 7705787 7705951 -176582711 + MER63A DNA MER1_type 44 209 -1 342 0 0 0 chr4 7705957 7705995 -176582667 + (TG)n Simple_repeat Simple_repeat 2 39 0 216 67 0 0 chr4 7706018 7706048 -176582614 + (TGAA)n Simple_repeat Simple_repeat 2 31 0 2091 232 48 32 chr4 7706251 7706819 -176581843 - MER74B LTR ERVL 0 622 46 580 181 29 0 chr4 7706825 7706930 -176581732 + MIR SINE MIR 76 183 -79 189 345 0 0 chr4 7707025 7707083 -176581579 + L2 LINE L2 3240 3297 -16 415 287 0 0 chr4 7707539 7707668 -176580994 + L1ME4a LINE L1 5581 5709 -412 367 257 91 79 chr4 7707716 7707906 -176580756 + L1ME4a LINE L1 5836 6031 -90 2497 60 17 0 chr4 7707906 7708205 -176580457 - AluY SINE Alu -7 304 1 367 257 91 79 chr4 7708205 7708279 -176580383 + L1ME4a LINE L1 6031 6103 -18 381 331 127 22 chr4 7709225 7709500 -176579162 + MLT1L LTR MaLR 312 615 0 502 246 8 0 chr4 7710276 7710410 -176578252 - LTR16C LTR ERVL 0 491 357 298 203 14 29 chr4 7710833 7710902 -176577760 - MIR SINE MIR -108 154 87 2408 90 30 0 chr4 7711104 7711404 -176577258 - AluSc SINE Alu 0 309 1 342 331 23 39 chr4 7711980 7712110 -176576552 - MIR SINE MIR -118 144 17 429 278 28 34 chr4 7712491 7712667 -176575995 + MER5B DNA MER1_type 4 178 0 237 191 0 0 chr4 7712688 7712735 -176575927 - MIR SINE MIR -71 137 91 1454 174 62 50 chr4 7713552 7713891 -176574771 - MER2 DNA MER2_type 0 344 2 551 306 153 14 chr4 7713912 7714134 -176574528 + MIR SINE MIR 9 261 -1 2309 110 3 0 chr4 7714177 7714477 -176574185 - AluSx SINE Alu -11 301 1 274 312 52 0 chr4 7716147 7716224 -176572438 - L2 LINE L2 -19 3253 3173 508 285 58 0 chr4 7716825 7716997 -176571665 - MIR SINE MIR -53 209 28 2120 157 38 27 chr4 7717439 7717987 -176570675 + MLT2A2 LTR ERVL 1 554 0 1661 246 19 49 chr4 7719856 7720327 -176568335 + L1MB5 LINE L1 5712 6168 -6 1839 124 39 72 chr4 7721141 7721529 -176567133 + THE1C LTR MaLR 1 375 0 432 55 0 0 chr4 7722046 7722101 -176566561 + (CA)n Simple_repeat Simple_repeat 1 55 0 271 313 0 42 chr4 7722682 7722778 -176565884 + L2 LINE L2 3178 3269 -3 228 346 30 0 chr4 7722790 7722891 -176565771 - L1ME LINE L1 -320 5801 5698 308 244 13 0 chr4 7723888 7723966 -176564696 + MIR3 SINE MIR 107 185 -23 228 322 44 11 chr4 7724467 7724557 -176564105 + L2 LINE L2 3140 3232 -40 204 324 29 29 chr4 7725161 7725263 -176563399 - MIR SINE MIR -63 145 44 1568 172 0 23 chr4 7726178 7726439 -176562223 - AluJo SINE Alu -53 259 5 379 304 43 7 chr4 7726505 7726643 -176562019 + MIR SINE MIR 108 250 -12 310 248 9 29 chr4 7727588 7727693 -176560969 + GA-rich Low_complexity Low_complexity 4 106 0 280 243 90 5 chr4 7727805 7727926 -176560736 + MIR SINE MIR 94 227 -35 223 325 111 13 chr4 7728068 7728302 -176560360 + L2 LINE L2 2676 2932 -382 890 254 39 4 chr4 7728560 7728792 -176559870 + MIR SINE MIR 2 241 -21 414 293 230 11 chr4 7728963 7729137 -176559525 + L1MEd LINE L1 300 511 -5608 295 323 67 24 chr4 7729179 7729207 -176559455 + L1MEd LINE L1 652 677 -5442 2455 85 0 0 chr4 7729207 7729512 -176559150 + AluSg SINE Alu 1 305 -5 295 323 67 24 chr4 7729512 7729647 -176559015 + L1MEd LINE L1 677 822 -5297 287 217 161 139 chr4 7729675 7729905 -176558757 - MIR SINE MIR -5 257 23 377 312 74 56 chr4 7729905 7729985 -176558677 + L1MEd LINE L1 986 1063 -1427 2429 92 0 0 chr4 7729985 7730289 -176558373 + AluSq SINE Alu 5 308 -5 377 312 74 56 chr4 7730289 7730890 -176557772 + L1MEd LINE L1 1063 1775 -715 1167 292 50 25 chr4 7731282 7732057 -176556605 + L1MEd LINE L1 2114 2908 -3221 257 317 79 30 chr4 7732249 7732350 -176556312 + MIR3 SINE MIR 65 170 -38 192 77 0 0 chr4 7732483 7732509 -176556153 + (T)n Simple_repeat Simple_repeat 1 26 0 2223 80 7 11 chr4 7732661 7732974 -176555688 + AluSq SINE Alu 1 312 0 2838 129 16 0 chr4 7733567 7733993 -176554669 + MER72 LTR ERV1 290 722 0 1508 245 55 52 chr4 7734285 7734828 -176553834 + MLT1H LTR MaLR 2 546 -3 747 313 9 8 chr4 7734867 7735113 -176553549 - MIR SINE MIR -1 261 16 212 305 29 38 chr4 7735250 7735355 -176553307 - L2 LINE L2 0 3272 3169 195 161 232 0 chr4 7735429 7735485 -176553177 - MIR SINE MIR -113 149 81 399 286 67 37 chr4 7735983 7736212 -176552450 + MIR SINE MIR 4 237 -25 673 229 202 0 chr4 7736258 7736476 -176552186 - MIR SINE MIR 0 262 1 272 264 74 47 chr4 7736558 7736706 -176551956 + L1ME4a LINE L1 5967 6118 -3 381 256 31 56 chr4 7737183 7737343 -176551319 + MIR SINE MIR 57 212 -50 340 326 0 0 chr4 7738637 7738735 -176549927 - MIR SINE MIR -119 143 46 238 250 44 0 chr4 7739279 7739347 -176549315 - MIR3 SINE MIR -48 160 90 537 291 58 5 chr4 7739571 7739777 -176548885 + LTR33 LTR ERVL 50 266 -255 2976 128 22 27 chr4 7740086 7740644 -176548018 + LTR10E LTR ERV1 11 609 0 621 244 51 97 chr4 7741955 7742084 -176546578 + L1MC5 LINE L1 7120 7253 -708 2314 123 0 0 chr4 7742084 7742216 -176546446 + AluSx SINE Alu 1 132 -180 2225 104 7 3 chr4 7742216 7742513 -176546149 + AluSc SINE Alu 1 298 -11 2314 123 0 0 chr4 7742513 7742689 -176545973 + AluSx SINE Alu 131 309 -3 621 244 51 97 chr4 7742689 7742990 -176545672 + L1MC5 LINE L1 7253 7530 -431 1732 182 6 88 chr4 7742992 7743406 -176545256 + L1MB3 LINE L1 5744 6190 7 2391 99 0 7 chr4 7743406 7743708 -176544954 + AluSq SINE Alu 1 300 -13 1732 182 6 88 chr4 7743708 7743738 -176544924 + L1MB3 LINE L1 6190 6150 -33 348 67 34 157 chr4 7743738 7743827 -176544835 + MADE1 DNA Mariner 2 79 -1 1732 182 6 88 chr4 7743827 7743858 -176544804 + L1MB3 LINE L1 6149 6181 -2 720 257 124 40 chr4 7743858 7744212 -176544450 + L1MC5 LINE L1 7533 7916 -45 191 219 45 6 chr4 7744230 7744307 -176544355 + MIR SINE MIR 49 115 -93 201 303 15 0 chr4 7744496 7744562 -176544100 + L2 LINE L2 3231 3297 -16 348 83 0 0 chr4 7744570 7744618 -176544044 + (TGAA)n Simple_repeat Simple_repeat 2 49 0 341 245 51 10 chr4 7745084 7745182 -176543480 - MIR SINE MIR -75 133 32 325 247 12 0 chr4 7745781 7745862 -176542800 - L2 LINE L2 -6 3307 3226 319 73 36 0 chr4 7745932 7745987 -176542675 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 291 217 58 92 chr4 7746906 7747026 -176541636 + MLT1H LTR MaLR 421 536 -13 239 235 0 0 chr4 7747046 7747097 -176541565 - MIR SINE MIR -145 117 67 237 258 48 16 chr4 7747497 7747559 -176541103 - MER91A DNA MER1_type -10 186 123 324 297 195 0 chr4 7747598 7747726 -176540936 - MER91A DNA MER1_type -43 153 1 329 301 75 8 chr4 7748887 7749020 -176539642 - MIR SINE MIR -21 241 100 303 302 35 59 chr4 7749582 7749751 -176538911 + L1MC/D LINE L1 5494 5658 -2150 381 193 36 0 chr4 7749751 7749834 -176538828 - Tigger3(Golem) DNA MER2_type -1 3028 2943 390 252 109 0 chr4 7749940 7750087 -176538575 + L2 LINE L2 2928 3090 -182 360 206 63 48 chr4 7751556 7751682 -176536980 + L1MD3 LINE L1 7853 7980 -15 209 354 135 25 chr4 7752100 7752419 -176536243 + L2 LINE L2 2918 3271 -1 1092 176 39 5 chr4 7752603 7752808 -176535854 - MER20 DNA MER1_type -7 212 1 185 384 73 33 chr4 7753418 7753569 -176535093 - MIR SINE MIR 0 262 106 254 315 19 94 chr4 7754266 7754479 -176534183 - L2 LINE L2 -80 3192 2996 940 81 0 0 chr4 7754579 7754690 -176533972 + AluSx SINE Alu 13 123 -190 1362 126 0 0 chr4 7754845 7755027 -176533635 + AluSx SINE Alu 112 293 -19 266 273 13 0 chr4 7755048 7755125 -176533537 - MER116 DNA Mariner -1 79 2 866 264 35 9 chr4 7755126 7755353 -176533309 - MIR SINE MIR -3 259 27 228 313 15 0 chr4 7755865 7755932 -176532730 - L2 LINE L2 -4 3268 3201 457 311 79 6 chr4 7756314 7756491 -176532171 + MIR SINE MIR 10 199 -63 2288 112 23 0 chr4 7756691 7756996 -176531666 - AluSx SINE Alu 0 312 1 262 342 0 52 chr4 7757152 7757307 -176531355 - MIR SINE MIR 0 262 116 334 301 128 15 chr4 7757428 7757624 -176531038 - MIR SINE MIR -19 243 26 2532 79 0 0 chr4 7758189 7758492 -176530170 + AluSg SINE Alu 1 303 -7 199 315 33 22 chr4 7759238 7759330 -176529332 - MIR3 SINE MIR -49 159 67 266 284 68 0 chr4 7759518 7759592 -176529070 - MIR SINE MIR -111 151 73 240 70 23 0 chr4 7759780 7759823 -176528839 + L1PB1 LINE L1 6107 6150 -1 2158 127 3 0 chr4 7759895 7760202 -176528460 + AluSx SINE Alu 1 308 -4 2285 90 14 0 chr4 7760361 7760649 -176528013 - AluSc SINE Alu -17 292 1 303 297 55 21 chr4 7760776 7760921 -176527741 - L1ME LINE L1 -380 5741 5592 370 336 0 15 chr4 7761865 7762002 -176526660 + L2 LINE L2 2949 3083 -189 259 330 43 27 chr4 7762201 7762386 -176526276 + L2 LINE L2 2864 3051 -221 411 380 22 11 chr4 7762638 7762822 -176525840 + MIR SINE MIR 7 192 -70 255 276 20 51 chr4 7763315 7763413 -176525249 - MIR SINE MIR -8 254 160 2450 75 7 0 chr4 7765710 7766004 -176522658 - AluSc SINE Alu -13 296 1 259 303 65 45 chr4 7766138 7766293 -176522369 + MIR3 SINE MIR 14 171 -37 289 234 70 16 chr4 7766549 7766677 -176521985 + MIR3 SINE MIR 3 137 -71 196 330 70 51 chr4 7766719 7766992 -176521670 - L2 LINE L2 -1 3271 2994 209 253 209 0 chr4 7767792 7767883 -176520779 + MIR SINE MIR 36 145 -63 263 254 160 41 chr4 7768178 7768347 -176520315 - MIR3 SINE MIR -17 191 3 2554 86 0 3 chr4 7768558 7768871 -176519791 + AluSx SINE Alu 1 312 0 1652 136 93 4 chr4 7769197 7769490 -176519172 - AluJb SINE Alu 0 316 1 2492 68 0 34 chr4 7769865 7770187 -176518475 + AluY SINE Alu 1 311 0 736 264 50 21 chr4 7770270 7770512 -176518150 + MIR SINE MIR 14 262 0 859 279 119 22 chr4 7770516 7770968 -176517694 + MLT1H1 LTR MaLR 5 500 -55 245 371 19 9 chr4 7771207 7771420 -176517242 - L1MC/D LINE L1 -1959 5849 5635 1266 195 19 11 chr4 7771567 7771930 -176516732 + L1M4 LINE L1 5188 5556 -628 504 260 82 32 chr4 7771953 7772194 -176516468 + L1ME LINE L1 1003 1316 -5056 324 306 46 31 chr4 7772279 7772475 -176516187 + L1ME LINE L1 5477 5675 -446 506 363 46 16 chr4 7772663 7773159 -176515503 + L1MC4a LINE L1 5400 5910 -1898 255 121 35 17 chr4 7773256 7773314 -176515348 - L1MD1 LINE L1 -10 6232 6174 297 133 0 0 chr4 7773328 7773373 -176515289 - Alu SINE Alu -13 289 245 755 244 45 25 chr4 7773373 7773574 -176515088 - L1MD2 LINE L1 -76 6283 6079 220 255 0 0 chr4 7774771 7774822 -176513840 + (CA)n Simple_repeat Simple_repeat 2 52 0 21 36 0 0 chr4 7774829 7774857 -176513805 + AT_rich Low_complexity Low_complexity 1 28 0 2501 83 3 0 chr4 7775104 7775405 -176513257 - AluSp SINE Alu -11 302 1 635 250 38 19 chr4 7776268 7776428 -176512234 + MER63 DNA MER1_type 1 789 -47 247 319 14 0 chr4 7776677 7776749 -176511913 - L2 LINE L2 -522 2792 2720 779 272 92 10 chr4 7776862 7777237 -176511425 + L2 LINE L2 2624 3040 -273 597 318 68 58 chr4 7777265 7779389 -176509273 + L1MEc LINE L1 94 2246 -4150 2139 138 0 3 chr4 7779389 7779693 -176508969 + AluSx SINE Alu 3 305 -7 597 318 68 58 chr4 7779693 7779746 -176508916 + L1MEc LINE L1 2246 2297 -4099 * 1120 263 45 12 chr4 7779721 7780147 -176508515 + L1MEc LINE L1 2561 3000 -3215 2490 87 0 0 chr4 7780240 7780538 -176508124 - AluSg SINE Alu -12 298 1 667 226 99 31 chr4 7780638 7780830 -176507832 + L1MEc LINE L1 2987 3207 -3008 2266 113 3 3 chr4 7780830 7781140 -176507522 + AluSx SINE Alu 1 310 -2 667 226 99 31 chr4 7781140 7781239 -176507423 + L1MEc LINE L1 3207 3298 -2917 280 242 19 12 chr4 7781253 7781414 -176507248 + GA-rich Low_complexity Low_complexity 1 162 0 186 296 43 26 chr4 7781530 7781645 -176507017 - MIR SINE MIR -126 136 20 462 311 37 47 chr4 7781797 7781987 -176506675 + MIR SINE MIR 10 197 -65 759 291 112 31 chr4 7784642 7784919 -176503743 + L2 LINE L2 2894 3212 -101 479 271 155 0 chr4 7784919 7785100 -176503562 - MER3 DNA MER1_type 0 209 1 759 291 112 31 chr4 7785100 7785207 -176503455 + L2 LINE L2 3212 3309 -4 328 191 0 0 chr4 7785731 7785794 -176502868 + MIR SINE MIR 83 145 -117 208 200 0 0 chr4 7786910 7786950 -176501712 + MIR SINE MIR 106 145 -117 2268 125 0 0 chr4 7787236 7787548 -176501114 + AluSx SINE Alu 1 312 0 23 0 0 0 chr4 7787548 7787571 -176501091 + AT_rich Low_complexity Low_complexity 1 23 0 221 310 31 33 chr4 7787824 7787991 -176500671 + MIR SINE MIR 36 149 -59 192 156 0 0 chr4 7788281 7788313 -176500349 - MIR SINE MIR -67 141 110 2145 114 13 13 chr4 7788493 7788808 -176499854 + MER1B DNA MER1_type 25 339 0 396 0 0 0 chr4 7789176 7789220 -176499442 + (CA)n Simple_repeat Simple_repeat 2 45 0 262 267 158 10 chr4 7789338 7789439 -176499223 + L2 LINE L2 3183 3298 -15 347 266 0 0 chr4 7789496 7789575 -176499087 - L2 LINE L2 -3 3310 3232 324 287 32 25 chr4 7790672 7790829 -176497833 + GA-rich Low_complexity Low_complexity 2 159 0 357 259 35 9 chr4 7790961 7791077 -176497585 - L2 LINE L2 -8 3305 3187 376 352 35 0 chr4 7791115 7791257 -176497405 - MIR3 SINE MIR -45 163 17 479 317 52 46 chr4 7791416 7791854 -176496808 - L1ME4a LINE L1 -140 5981 5541 317 303 53 62 chr4 7791884 7792092 -176496570 - L1ME4a LINE L1 -2330 5478 5273 404 183 32 11 chr4 7792989 7793082 -176495580 + MIR SINE MIR 89 183 -79 394 182 0 13 chr4 7794557 7794634 -176494028 + MLT1A1 LTR MaLR 8 83 -282 1713 79 19 5 chr4 7794853 7795069 -176493593 - AluSg/x SINE Alu -11 301 83 487 284 77 7 chr4 7795374 7795529 -176493133 - L2 LINE L2 -5 3308 3143 1672 190 91 23 chr4 7795725 7796156 -176492506 + MLT1C LTR MaLR 6 465 -2 282 309 73 0 chr4 7796538 7796661 -176492001 + MIR SINE MIR 71 202 -60 958 148 9 7 chr4 7797110 7797360 -176491302 + (ATGGTG)n Simple_repeat Simple_repeat 1 427 0 1006 137 12 2 chr4 7797360 7797782 -176490880 + (ATG)n Simple_repeat Simple_repeat 1 604 0 1244 154 25 57 chr4 7797887 7798167 -176490495 - MER46B DNA MER2_type -90 146 1 1708 191 49 47 chr4 7798238 7798629 -176490033 + MLT1C LTR MaLR 1 395 -72 2046 143 13 3 chr4 7798629 7798930 -176489732 - AluJo SINE Alu -4 308 5 1708 191 49 47 chr4 7798930 7799004 -176489658 + MLT1C LTR MaLR 395 467 0 3566 214 26 5 chr4 7799374 7800187 -176488475 - L1M4 LINE L1 -1805 4341 3512 747 237 40 0 chr4 7800672 7800849 -176487813 - MER5A DNA MER1_type -5 184 1 418 319 106 0 chr4 7801239 7801427 -176487235 - MIR SINE MIR -27 235 28 361 308 165 21 chr4 7802314 7802551 -176486111 + L1ME4a LINE L1 5850 6120 -1 2279 117 0 13 chr4 7802984 7803300 -176485362 - AluSx SINE Alu 0 312 1 313 315 2 2 chr4 7803433 7803542 -176485120 + MIR SINE MIR 39 147 -61 213 121 0 0 chr4 7804187 7804220 -176484442 + (A)n Simple_repeat Simple_repeat 1 33 0 1625 201 69 38 chr4 7804376 7804650 -176484012 - MLT1C LTR MaLR 0 467 170 2315 99 0 0 chr4 7804650 7804964 -176483698 - AluSg SINE Alu 0 314 1 1625 201 69 38 chr4 7804964 7805134 -176483528 - MLT1C LTR MaLR -297 170 7 375 23 0 0 chr4 7805344 7805388 -176483274 + (TG)n Simple_repeat Simple_repeat 2 45 0 520 217 0 25 chr4 7805594 7805714 -176482948 - MIR SINE MIR -97 165 49 2209 94 39 0 chr4 7805907 7806207 -176482455 + AluSx SINE Alu 1 289 -23 249 229 29 14 chr4 7806704 7806774 -176481888 - LTR67 LTR ERVL -387 170 100 250 81 0 0 chr4 7807473 7807510 -176481152 + MIR SINE MIR 107 143 -65 247 330 62 9 chr4 7807859 7807971 -176480691 + MIR SINE MIR 78 195 -67 180 77 0 0 chr4 7808177 7808203 -176480459 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1959 123 0 0 chr4 7808204 7808480 -176480182 - AluSx SINE Alu -36 276 1 2145 163 31 16 chr4 7808932 7809313 -176479349 - MLT1B LTR MaLR 0 390 4 184 381 63 16 chr4 7809533 7809659 -176479003 + L2 LINE L2 3098 3229 -43 288 309 99 89 chr4 7809706 7810020 -176478642 - L2 LINE L2 -5 3267 2951 226 216 0 0 chr4 7810020 7810071 -176478591 - MLT1I LTR MaLR -1 408 358 2095 131 40 35 chr4 7810078 7810451 -176478211 - THE1C LTR MaLR 0 375 1 22 0 0 0 chr4 7811400 7811422 -176477240 + AT_rich Low_complexity Low_complexity 1 22 0 3321 168 114 26 chr4 7811602 7811777 -176476885 - L1MCa LINE L1 -3926 2500 2342 2213 110 0 0 chr4 7811777 7812085 -176476577 - AluSx SINE Alu -4 308 1 3321 168 114 26 chr4 7812085 7812706 -176475956 - L1MCa LINE L1 -4084 2342 1777 1923 148 0 0 chr4 7812706 7812997 -176475665 - AluSx SINE Alu -21 291 1 3321 168 114 26 chr4 7812997 7813269 -176475393 - L1MCa LINE L1 -4649 1777 1530 1487 204 42 0 chr4 7813269 7813553 -176475109 - AluJb SINE Alu -16 296 1 3321 168 114 26 chr4 7813553 7813985 -176474677 - L1MCa LINE L1 -4896 1530 777 883 212 93 0 chr4 7813989 7814215 -176474447 - L1MCa LINE L1 -6173 253 7 243 311 100 0 chr4 7816176 7816266 -176472396 - MIR SINE MIR -115 147 49 473 306 47 58 chr4 7816545 7816888 -176471774 + L2 LINE L2 2932 3270 -2 2057 117 10 0 chr4 7818153 7818443 -176470219 + AluSx SINE Alu 1 293 -19 547 205 18 0 chr4 7818632 7818744 -176469918 - MER81 DNA DNA 0 114 1 192 194 113 32 chr4 7820116 7820178 -176468484 + MIR SINE MIR 34 100 -108 502 337 150 13 chr4 7820574 7821186 -176467476 + L1ME4a LINE L1 5301 5996 -125 2098 110 0 25 chr4 7821579 7821898 -176466764 - AluSx SINE Alu -1 311 1 264 363 137 0 chr4 7822739 7822929 -176465733 - MIR SINE MIR 0 262 47 356 278 189 22 chr4 7823603 7823772 -176464890 - MIR SINE MIR -26 236 34 2207 79 3 55 chr4 7823772 7824102 -176464560 - AluSq SINE Alu 0 313 1 210 154 0 0 chr4 7824770 7824809 -176463853 + A-rich Low_complexity Low_complexity 1 39 0 2011 132 3 16 chr4 7824927 7825237 -176463425 + AluSx SINE Alu 1 306 -6 237 65 0 0 chr4 7826461 7826492 -176462170 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 243 275 154 0 chr4 7826910 7827001 -176461661 + L2 LINE L2 3168 3272 0 183 343 14 0 chr4 7827001 7827071 -176461591 - MIR SINE MIR -129 133 63 472 243 69 23 chr4 7827762 7827935 -176460727 + L1MB7 LINE L1 5943 6123 -61 250 254 34 68 chr4 7829753 7829871 -176458791 + L2 LINE L2 3158 3271 -1 618 236 23 23 chr4 7830201 7830375 -176458287 + MLT1H LTR MaLR 1 174 -375 585 176 17 17 chr4 7830490 7830609 -176458053 + MLT1H LTR MaLR 431 549 0 3574 139 13 8 chr4 7830773 7831372 -176457290 + LTR10E LTR ERV1 1 602 -31 659 245 13 0 chr4 7831546 7831701 -176456961 - MIR SINE MIR -95 167 11 868 234 92 77 chr4 7833519 7833844 -176454818 - MER102a DNA MER1_type 0 330 1 369 351 48 0 chr4 7834093 7834258 -176454404 + MIR SINE MIR 20 192 -70 290 333 25 44 chr4 7834312 7834516 -176454146 + L3 LINE CR1 1272 1471 -106 2115 103 17 0 chr4 7835427 7835718 -176452944 + AluSx SINE Alu 1 296 -16 213 319 138 11 chr4 7837782 7837970 -176450692 + MIR SINE MIR 36 247 -15 390 279 41 7 chr4 7838368 7838515 -176450147 - L2 LINE L2 0 3272 3121 405 291 159 28 chr4 7839040 7839360 -176449302 + L2 LINE L2 2259 2620 -694 542 284 157 25 chr4 7839400 7839794 -176448868 + L2 LINE L2 2804 3249 -64 1945 144 0 38 chr4 7841112 7841432 -176447230 - AluSx SINE Alu -4 308 1 1968 144 0 13 chr4 7842029 7842334 -176446328 + AluJb SINE Alu 1 301 -11 3087 102 61 5 chr4 7844494 7844934 -176443728 + MER4C LTR ERV1 1 465 0 1818 87 30 26 chr4 7845394 7845660 -176443002 + AluSx SINE Alu 36 302 -10 222 274 38 29 chr4 7846221 7846325 -176442337 - MIR SINE MIR -23 185 75 1233 141 34 43 chr4 7847094 7847282 -176441380 + MER2 DNA MER2_type 2 189 -156 1894 176 71 0 chr4 7847282 7847606 -176441056 + MER7A DNA MER2_type 1 345 -1 1233 141 34 43 chr4 7847606 7847651 -176441011 + MER2 DNA MER2_type 189 233 -112 705 119 0 0 chr4 7847655 7847756 -176440906 + AluSg/x SINE Alu 204 304 -6 665 167 0 18 chr4 7847756 7847870 -176440792 + MER2 DNA MER2_type 234 345 0 301 241 138 0 chr4 7848280 7848367 -176440295 - L2 LINE L2 -8 3264 3166 1892 119 10 42 chr4 7848458 7848769 -176439893 + AluSx SINE Alu 1 301 -11 1235 129 0 0 chr4 7848769 7848947 -176439715 + AluSg/x SINE Alu 134 311 -1 470 265 54 58 chr4 7848952 7849246 -176439416 + L1MC5 LINE L1 7238 7530 -431 1754 182 6 88 chr4 7849248 7849662 -176439000 + L1MB3 LINE L1 5744 6190 7 2252 99 0 7 chr4 7849662 7849964 -176438698 + AluSq SINE Alu 1 300 -13 1754 182 6 88 chr4 7849964 7849994 -176438668 + L1MB3 LINE L1 6190 6150 -33 383 67 34 157 chr4 7849994 7850083 -176438579 + MADE1 DNA Mariner 2 79 -1 1754 182 6 88 chr4 7850083 7850114 -176438548 + L1MB3 LINE L1 6149 6181 -2 441 251 23 69 chr4 7850114 7850289 -176438373 + L1MC5 LINE L1 7533 7699 -262 216 239 0 0 chr4 7850997 7851043 -176437619 + (CCG)n Simple_repeat Simple_repeat 2 47 0 568 195 86 29 chr4 7851121 7851295 -176437367 - MER96B DNA MER1_type? -233 184 1 804 249 66 8 chr4 7852962 7853203 -176435459 + MER112 DNA MER1_type 2 256 0 972 203 30 5 chr4 7853406 7853608 -176435054 - MIR SINE MIR -42 220 14 316 311 142 16 chr4 7854809 7854999 -176433663 - MIR SINE MIR -48 214 1 360 360 27 0 chr4 7855536 7855686 -176432976 + MIR SINE MIR 48 201 -61 1046 253 88 10 chr4 7856014 7856442 -176432220 + MLT1D LTR MaLR 3 505 0 2265 75 7 0 chr4 7856538 7856833 -176431829 - AluSp SINE Alu -16 297 1 282 268 10 21 chr4 7856833 7856930 -176431732 + MIR SINE MIR 167 262 0 213 275 43 0 chr4 7857213 7857282 -176431380 + MIR SINE MIR 101 172 -90 1822 168 29 9 chr4 7857672 7858018 -176430644 + MLT1B LTR MaLR 1 353 -37 846 147 8 0 chr4 7858023 7858152 -176430510 + MER6A DNA MER2_type 32 161 -444 765 273 84 12 chr4 7858168 7858490 -176430172 - MLT1D LTR MaLR -76 429 85 * 2067 115 81 56 chr4 7858469 7858799 -176429863 + MER6A DNA MER2_type 188 531 -334 2058 147 0 0 chr4 7858799 7859111 -176429551 + AluSx SINE Alu 1 312 0 2067 115 81 56 chr4 7859111 7859188 -176429474 + MER6A DNA MER2_type 531 605 0 714 269 145 31 chr4 7859652 7859930 -176428732 - LTR33A LTR ERVL -18 505 260 1411 281 36 25 chr4 7859930 7860368 -176428294 + LTR47B LTR ERVL 1 443 0 714 269 145 31 chr4 7860368 7860538 -176428124 - LTR33A LTR ERVL -263 260 6 449 322 39 30 chr4 7861468 7861667 -176426995 - MIR SINE MIR -54 208 9 2914 212 66 29 chr4 7862133 7862817 -176425845 + MER67C LTR ERV1 2 710 0 567 297 128 0 chr4 7862902 7863097 -176425565 + MIR SINE MIR 21 240 -22 284 333 0 0 chr4 7864552 7864633 -176424029 - MER81 DNA DNA -16 98 18 286 298 53 0 chr4 7867815 7867909 -176420753 - L2 LINE L2 -1 3312 3214 269 279 0 0 chr4 7868786 7868865 -176419797 + A-rich Low_complexity Low_complexity 1 79 0 1482 116 36 18 chr4 7869291 7869515 -176419147 - MER30 DNA MER1_type 0 230 3 425 313 55 0 chr4 7869869 7869997 -176418665 - MIR3 SINE MIR -6 202 68 220 277 189 14 chr4 7871117 7871265 -176417397 - L3 LINE CR1 -216 1361 1188 227 289 132 26 chr4 7871423 7871537 -176417125 - L2 LINE L2 -4 3268 3143 367 244 0 0 chr4 7871669 7871751 -176416911 + MIR SINE MIR 73 154 -108 628 314 51 8 chr4 7872378 7872633 -176416029 - L1ME3 LINE L1 -1 6161 5896 425 168 179 0 chr4 7872875 7872970 -176415692 - MER81 DNA DNA -1 113 2 694 257 38 16 chr4 7873319 7873502 -176415160 - MER5A DNA MER1_type 0 189 3 1910 103 57 0 chr4 7873683 7873965 -176414697 + AluSx SINE Alu 1 298 -14 290 181 14 14 chr4 7874027 7874099 -176414563 - L2 LINE L2 -277 2995 2924 195 270 79 0 chr4 7874182 7874245 -176414417 - L2 LINE L2 -556 2758 2691 347 288 183 0 chr4 7874302 7874455 -176414207 + MIR SINE MIR 79 259 -3 198 368 11 0 chr4 7874596 7874683 -176413979 + MIR SINE MIR 51 138 -124 478 238 13 64 chr4 7874884 7875070 -176413592 + MIR SINE MIR 5 181 -67 187 244 0 0 chr4 7875071 7875112 -176413550 - L2 LINE L2 -5 3267 3227 444 51 0 0 chr4 7875182 7875241 -176413421 + (CAAAA)n Simple_repeat Simple_repeat 4 62 0 538 304 134 5 chr4 7876004 7876221 -176412441 - MIR SINE MIR 0 262 18 738 278 52 0 chr4 7876727 7876921 -176411741 - MIR SINE MIR -51 211 8 1689 170 46 51 chr4 7876983 7877056 -176411606 + MLT2D LTR ERVL 3 75 -339 1926 129 4 0 chr4 7877056 7877356 -176411306 + AluSx SINE Alu 5 305 0 1689 170 46 51 chr4 7877356 7877675 -176410987 + MLT2D LTR ERVL 75 394 -20 531 249 103 12 chr4 7877742 7877907 -176410755 + MIR SINE MIR 73 252 -10 452 327 12 6 chr4 7883785 7883950 -176404712 - MIR3 SINE MIR -39 169 4 190 361 83 8 chr4 7884116 7884249 -176404413 - MIR SINE MIR -7 255 113 303 333 49 24 chr4 7884388 7884511 -176404151 + L2 LINE L2 3145 3270 -2 442 312 91 15 chr4 7885085 7885284 -176403378 - MIR SINE MIR -33 229 16 473 306 47 58 chr4 7886515 7886858 -176401804 + L2 LINE L2 2932 3270 -2 2057 117 10 0 chr4 7888123 7888413 -176400249 + AluSx SINE Alu 1 293 -19 547 205 18 0 chr4 7888602 7888714 -176399948 - MER81 DNA DNA 0 114 1 213 177 113 32 chr4 7890086 7890148 -176398514 + MIR SINE MIR 34 100 -108 498 337 150 13 chr4 7890544 7891156 -176397506 + L1ME4a LINE L1 5301 5996 -125 2098 110 0 25 chr4 7891549 7891868 -176396794 - AluSx SINE Alu -1 311 1 264 363 137 0 chr4 7892709 7892899 -176395763 - MIR SINE MIR 0 262 47 356 278 189 22 chr4 7893573 7893742 -176394920 - MIR SINE MIR -26 236 34 2207 79 3 55 chr4 7893742 7894072 -176394590 - AluSq SINE Alu 0 313 1 210 154 0 0 chr4 7894740 7894779 -176393883 + A-rich Low_complexity Low_complexity 1 39 0 2011 132 3 16 chr4 7894897 7895207 -176393455 + AluSx SINE Alu 1 306 -6 237 65 0 0 chr4 7896431 7896462 -176392200 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 243 275 154 0 chr4 7896880 7896971 -176391691 + L2 LINE L2 3168 3272 0 183 343 14 0 chr4 7896971 7897041 -176391621 - MIR SINE MIR -129 133 63 472 243 69 23 chr4 7897732 7897905 -176390757 + L1MB7 LINE L1 5943 6123 -61 250 254 34 68 chr4 7899723 7899841 -176388821 + L2 LINE L2 3158 3271 -1 618 236 23 23 chr4 7900171 7900345 -176388317 + MLT1H LTR MaLR 1 174 -375 585 176 17 17 chr4 7900460 7900579 -176388083 + MLT1H LTR MaLR 431 549 0 3574 139 13 8 chr4 7900743 7901342 -176387320 + LTR10E LTR ERV1 1 602 -31 659 245 13 0 chr4 7901516 7901671 -176386991 - MIR SINE MIR -95 167 11 868 234 92 77 chr4 7903489 7903814 -176384848 - MER102a DNA MER1_type 0 330 1 369 351 48 0 chr4 7904063 7904228 -176384434 + MIR SINE MIR 20 192 -70 290 333 25 44 chr4 7904282 7904486 -176384176 + L3 LINE CR1 1272 1471 -106 2115 103 17 0 chr4 7905397 7905688 -176382974 + AluSx SINE Alu 1 296 -16 206 296 100 37 chr4 7907710 7907940 -176380722 + MIR SINE MIR 2 247 -15 401 247 71 13 chr4 7908338 7908492 -176380170 - L2 LINE L2 0 3272 3110 418 281 163 31 chr4 7909010 7909330 -176379332 + L2 LINE L2 2259 2620 -694 547 264 170 38 chr4 7909370 7909764 -176378898 + L2 LINE L2 2804 3249 -64 2082 134 0 47 chr4 7911082 7911402 -176377260 - AluSx SINE Alu -7 305 1 2095 142 0 13 chr4 7911999 7912302 -176376360 + AluJb SINE Alu 1 299 -13 3015 102 61 5 chr4 7914464 7914904 -176373758 + MER4C LTR ERV1 1 465 0 1930 87 30 26 chr4 7915364 7915630 -176373032 + AluSx SINE Alu 36 302 -10 234 274 38 29 chr4 7916191 7916295 -176372367 - MIR SINE MIR -23 185 75 1258 142 34 39 chr4 7917064 7917251 -176371411 + MER2 DNA MER2_type 2 189 -156 1836 176 71 0 chr4 7917251 7917575 -176371087 + MER7A DNA MER2_type 1 345 -1 1258 142 34 39 chr4 7917575 7917620 -176371042 + MER2 DNA MER2_type 189 233 -112 701 119 0 0 chr4 7917624 7917725 -176370937 + AluSg/x SINE Alu 204 304 -6 658 167 0 18 chr4 7917725 7917839 -176370823 + MER2 DNA MER2_type 234 345 0 317 241 138 0 chr4 7918249 7918336 -176370326 - L2 LINE L2 -8 3264 3166 2318 110 3 16 chr4 7918427 7918744 -176369918 + AluSq SINE Alu 1 313 0 267 333 86 17 chr4 7918841 7919015 -176369647 + MIR SINE MIR 7 192 -70 2127 116 36 39 chr4 7919186 7919548 -176369114 - MER46B DNA MER2_type 0 236 1 1883 196 50 33 chr4 7919619 7920010 -176368652 + MLT1C LTR MaLR 1 403 -64 2116 138 13 3 chr4 7920010 7920315 -176368347 - AluJo SINE Alu -4 308 1 1883 196 50 33 chr4 7920315 7920382 -176368280 + MLT1C LTR MaLR 403 467 0 345 220 122 114 chr4 7920462 7920645 -176368017 + Charlie8 DNA MER1_type 244 431 -1986 1677 116 0 0 chr4 7920645 7920869 -176367793 + AluSg/x SINE Alu 80 303 -7 345 220 122 114 chr4 7920869 7920930 -176367732 + Charlie8 DNA MER1_type 431 490 -1927 591 175 0 0 chr4 7921792 7921912 -176366750 + (TGGA)n Simple_repeat Simple_repeat 3 122 0 204 67 0 0 chr4 7922331 7922361 -176366301 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 2055 128 60 31 chr4 7922974 7923327 -176365335 + THE1B LTR MaLR 1 363 -1 306 0 0 0 chr4 7923518 7923552 -176365110 + (CA)n Simple_repeat Simple_repeat 2 35 0 361 292 83 8 chr4 7923810 7923930 -176364732 - MIR SINE MIR -55 207 79 405 264 104 0 chr4 7924425 7924531 -176364131 + MIR SINE MIR 74 190 -72 1648 172 15 7 chr4 7925056 7925329 -176363333 - AluJb SINE Alu -27 285 11 532 247 25 15 chr4 7925339 7925515 -176363147 + L1MC4a LINE L1 5723 5801 -383 2434 91 0 0 chr4 7925659 7925957 -176362705 + AluSx SINE Alu 1 298 -14 2288 112 3 3 chr4 7926574 7926879 -176361783 + AluSp SINE Alu 1 305 -8 259 277 33 97 chr4 7926896 7927196 -176361466 - L1ME4a LINE L1 -205 5916 5636 252 0 0 0 chr4 7927505 7927533 -176361129 + (A)n Simple_repeat Simple_repeat 1 28 0 183 80 0 0 chr4 7927837 7927862 -176360800 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 269 316 159 20 chr4 7928490 7929051 -176359611 + L2 LINE L2 1762 2400 -914 1366 242 92 9 chr4 7929199 7929624 -176359038 + MLT1C LTR MaLR 8 467 0 380 327 39 54 chr4 7929782 7929987 -176358675 + MIR SINE MIR 51 252 -10 360 243 96 96 chr4 7930630 7930869 -176357793 - L2 LINE L2 -1 3312 3074 563 246 106 80 chr4 7931483 7931881 -176356781 + MLT1K LTR MaLR 169 576 -12 244 255 134 33 chr4 7931981 7932144 -176356518 - MIR3 SINE MIR -69 193 15 1477 206 73 42 chr4 7932323 7932496 -176356166 + MLT1C LTR MaLR 1 167 -300 2220 112 0 0 chr4 7932496 7932783 -176355879 + AluSx SINE Alu 19 305 -7 1477 206 73 42 chr4 7932783 7933060 -176355602 + MLT1C LTR MaLR 167 465 -2 412 265 90 50 chr4 7933982 7934182 -176354480 - MIR SINE MIR -49 213 6 244 365 47 31 chr4 7934388 7934580 -176354082 - L3 LINE CR1 -21 1556 1362 199 333 171 0 chr4 7935593 7935710 -176352952 + L2 LINE L2 2906 3042 -230 1917 149 40 7 chr4 7937249 7937551 -176351111 + AluJb SINE Alu 1 312 0 308 172 20 30 chr4 7937555 7937654 -176351008 + GA-rich Low_complexity Low_complexity 3 100 0 625 176 12 24 chr4 7937682 7937852 -176350810 + GA-rich Low_complexity Low_complexity 3 170 0 339 130 0 0 chr4 7937871 7937925 -176350737 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 293 303 20 0 chr4 7938210 7938309 -176350353 - L1ME LINE L1 -430 5691 5591 642 289 77 37 chr4 7938325 7938674 -176349988 - L2 LINE L2 -26 3287 2925 264 325 95 5 chr4 7938746 7938946 -176349716 - L1ME LINE L1 -2336 5472 5255 2412 94 73 52 chr4 7939222 7939546 -176349116 - Tigger4(Zombi) DNA MER2_type 0 2731 2394 1577 204 18 0 chr4 7939546 7939830 -176348832 - AluJo SINE Alu -19 293 5 2412 94 73 52 chr4 7939830 7939932 -176348730 - Tigger4(Zombi) DNA MER2_type -337 2394 2296 1273 158 54 4 chr4 7939933 7940174 -176348488 - Tigger4(Zombi) DNA MER2_type -2477 254 2 2214 113 0 7 chr4 7940687 7940980 -176347682 + AluSq SINE Alu 2 292 -21 207 139 0 0 chr4 7940980 7941016 -176347646 + (GGGA)n Simple_repeat Simple_repeat 1 36 0 * 1121 95 17 20 chr4 7941010 7941306 -176347356 + (GAAA)n Simple_repeat Simple_repeat 1 296 0 669 260 65 29 chr4 7941323 7941600 -176347062 - L1ME3 LINE L1 -133 6098 5812 1040 291 68 50 chr4 7941652 7942406 -176346256 - L1ME3 LINE L1 -4064 2332 1566 287 241 23 0 chr4 7942431 7942518 -176346144 - L1ME LINE L1 -649 5590 5502 4691 261 82 29 chr4 7942660 7943777 -176344885 - L1MB7 LINE L1 -75 6109 5052 185 0 40 0 chr4 7943777 7943802 -176344860 + (TG)n Simple_repeat Simple_repeat 2 27 0 4691 261 82 29 chr4 7943802 7944122 -176344540 - L1MB7 LINE L1 -1132 5052 4750 2224 99 6 51 chr4 7944122 7944435 -176344227 + AluSx SINE Alu 1 299 -13 4691 261 82 29 chr4 7944435 7944796 -176343866 - L1MB7 LINE L1 -1434 4750 4409 1515 196 58 52 chr4 7944796 7945159 -176343503 + MLT1A1 LTR MaLR 1 365 0 4691 261 82 29 chr4 7945159 7945236 -176343426 - L1MB7 LINE L1 -1775 4409 4338 2295 70 0 0 chr4 7945236 7945508 -176343154 - AluY SINE Alu -1 310 39 185 0 40 0 chr4 7945514 7945539 -176343123 + (TTTTA)n Simple_repeat Simple_repeat 5 30 0 4691 261 82 29 chr4 7945539 7946648 -176342014 - L1MB7 LINE L1 -1850 4334 2957 1133 266 115 9 chr4 7946682 7947133 -176341529 - L1MB7 LINE L1 -3464 2682 2184 202 286 0 0 chr4 7947863 7947912 -176340750 + L2 LINE L2 3239 3287 -26 341 93 19 0 chr4 7949032 7949086 -176339576 + (TC)n Simple_repeat Simple_repeat 1 55 0 2101 156 9 69 chr4 7949893 7950328 -176338334 + MLT2D LTR ERVL 1 409 -5 232 287 23 23 chr4 7950331 7950418 -176338244 + MIR SINE MIR 106 192 -70 2443 173 34 30 chr4 7951193 7951640 -176337022 + L1MC3 LINE L1 6363 6814 -971 2470 73 0 3 chr4 7951640 7951941 -176336721 - AluY SINE Alu -4 307 8 2443 173 34 30 chr4 7951941 7951997 -176336665 + L1MC3 LINE L1 6814 6868 -917 1900 169 67 3 chr4 7952621 7952982 -176335680 + MLT1B LTR MaLR 7 390 0 234 274 38 28 chr4 7952982 7953088 -176335574 + MIR3 SINE MIR 91 197 -11 415 276 72 17 chr4 7953148 7953329 -176335333 - MIR SINE MIR -32 230 40 205 67 0 111 chr4 7953390 7953435 -176335227 + (CCCCAG)n Simple_repeat Simple_repeat 3 42 0 379 312 26 69 chr4 7953984 7954215 -176334447 - MIR SINE MIR -32 230 10 1124 118 0 12 chr4 7954429 7954598 -176334064 + MER4B LTR ERV1 3 169 -441 730 272 170 8 chr4 7954614 7954978 -176333684 + MER57B LTR ERV1 12 434 0 273 301 48 10 chr4 7954978 7955081 -176333581 - MIR SINE MIR -115 147 41 343 181 371 9 chr4 7955659 7955775 -176332887 - MER5A DNA MER1_type -22 167 10 303 278 81 40 chr4 7955839 7956012 -176332650 - MER5A DNA MER1_type -3 186 7 351 228 76 0 chr4 7956048 7956140 -176332522 - MIR SINE MIR -91 171 73 377 312 40 29 chr4 7956278 7956451 -176332211 + L2 LINE L2 3139 3313 0 466 344 36 0 chr4 7956471 7956663 -176331999 - MIR SINE MIR -10 252 54 338 312 160 8 chr4 7956655 7956918 -176331744 - L2 LINE L2 -1121 2193 1891 * 2159 111 33 13 chr4 7957642 7957948 -176330714 + AluSx SINE Alu 1 312 0 272 242 100 25 chr4 7958001 7958121 -176330541 - L2 LINE L2 -1 3271 3143 182 311 97 10 chr4 7959248 7959351 -176329311 - L2 LINE L2 -85 3228 3117 857 176 35 0 chr4 7959459 7959629 -176329033 - MER45A DNA AcHobo 0 178 3 8744 40 2 7 chr4 7959721 7960797 -176327865 - MER11C LTR ERVK 0 1071 1 753 287 163 23 chr4 7961305 7961748 -176326914 + MLT1D LTR MaLR 1 505 0 2343 82 6 19 chr4 7961777 7962094 -176326568 + AluSp SINE Alu 1 313 0 299 327 8 9 chr4 7962302 7962423 -176326239 - MIR SINE MIR -70 138 30 341 317 35 64 chr4 7962817 7963019 -176325643 + L1ME LINE L1 5592 5787 -334 206 330 32 0 chr4 7963336 7963430 -176325232 + MIR SINE MIR 154 250 -12 2331 109 3 0 chr4 7963436 7963738 -176324924 + AluSx SINE Alu 1 303 -9 236 175 0 0 chr4 7963989 7964029 -176324633 + L1ME LINE L1 5725 5764 -357 496 281 36 12 chr4 7964243 7964410 -176324252 - Charlie8 DNA MER1_type -2246 171 1 218 197 15 45 chr4 7964472 7964538 -176324124 + (TATATG)n Simple_repeat Simple_repeat 5 68 0 1954 127 67 0 chr4 7964583 7964866 -176323796 + AluSx SINE Alu 1 302 -10 939 251 8 16 chr4 7965288 7965531 -176323131 + MIR SINE MIR 21 261 -1 1806 170 3 13 chr4 7966059 7966365 -176322297 + AluJo SINE Alu 1 303 -9 208 293 0 0 chr4 7966570 7966628 -176322034 + MIR SINE MIR 19 76 -132 240 196 92 2 chr4 7967477 7967554 -176321108 - MIR SINE MIR -63 145 63 203 204 37 0 chr4 7968056 7968110 -176320552 + (CA)n Simple_repeat Simple_repeat 2 57 0 327 365 30 30 chr4 7968214 7968414 -176320248 - L1MCa LINE L1 -4317 2290 2091 518 296 70 58 chr4 7968424 7969227 -176319435 - L1MCa LINE L1 -4573 2034 1024 270 277 8 40 chr4 7969275 7969435 -176319227 + C-rich Low_complexity Low_complexity 1 154 0 221 278 8 48 chr4 7969625 7969751 -176318911 + CT-rich Low_complexity Low_complexity 2 122 0 2492 68 0 34 chr4 7970019 7970341 -176318321 - AluY SINE Alu 0 311 1 1683 137 91 4 chr4 7970716 7970979 -176317683 + AluJb SINE Alu 1 286 -26 2554 86 0 3 chr4 7971335 7971648 -176317014 - AluSx SINE Alu 0 312 1 263 254 160 41 chr4 7971859 7972028 -176316634 + MIR3 SINE MIR 3 191 -17 209 253 209 0 chr4 7972323 7972414 -176316248 - MIR SINE MIR -63 145 36 196 330 70 51 chr4 7973214 7973487 -176315175 + L2 LINE L2 2994 3271 -1 289 234 70 16 chr4 7973529 7973657 -176315005 - MIR3 SINE MIR -71 137 3 259 303 65 45 chr4 7973913 7974068 -176314594 - MIR3 SINE MIR -37 171 14 2450 75 7 0 chr4 7974202 7974496 -176314166 + AluSc SINE Alu 1 296 -13 255 276 20 51 chr4 7976793 7976891 -176311771 + MIR SINE MIR 160 254 -8 411 380 22 11 chr4 7977384 7977568 -176311094 - MIR SINE MIR -70 192 7 259 330 43 27 chr4 7977820 7978005 -176310657 - L2 LINE L2 -221 3051 2864 370 336 0 15 chr4 7978204 7978341 -176310321 - L2 LINE L2 -189 3083 2949 303 297 55 21 chr4 7979285 7979430 -176309232 + L1ME LINE L1 5592 5741 -380 2285 108 10 3 chr4 7979557 7979864 -176308798 + AluSc SINE Alu 1 309 0 457 311 79 6 chr4 7980064 7980241 -176308421 - MIR SINE MIR -63 199 10 228 313 15 0 chr4 7980623 7980690 -176307972 + L2 LINE L2 3201 3268 -4 866 264 35 9 chr4 7981202 7981429 -176307233 + MIR SINE MIR 27 259 -3 266 273 13 0 chr4 7981430 7981507 -176307155 + MER116 DNA Mariner 2 79 -1 1362 126 0 0 chr4 7981528 7981710 -176306952 - AluSx SINE Alu -19 293 112 940 81 0 0 chr4 7981865 7981976 -176306686 - AluSx SINE Alu -190 123 13 185 384 73 33 chr4 7982984 7983135 -176305527 + MIR SINE MIR 106 262 0 1092 176 39 5 chr4 7983745 7983950 -176304712 + MER20 DNA MER1_type 1 212 -7 209 354 135 25 chr4 7984134 7984453 -176304209 - L2 LINE L2 -1 3271 2918 360 206 63 48 chr4 7984871 7984997 -176303665 - L1MD3 LINE L1 -15 7980 7853 3287 169 29 23 chr4 7985409 7986111 -176302551 - L1MB3 LINE L1 0 6183 5478 1107 261 41 0 chr4 7986139 7986407 -176302255 - MLT1A1 LTR MaLR -4 361 83 198 0 0 0 chr4 7986546 7986568 -176302094 + (AGCTG)n Simple_repeat Simple_repeat 3 24 0 1011 173 108 124 chr4 7986875 7987122 -176301540 - MLT1A1 LTR MaLR 0 365 124 2051 157 13 0 chr4 7987122 7987428 -176301234 - AluJo SINE Alu 0 312 3 1011 173 108 124 chr4 7987428 7987551 -176301111 - MLT1A1 LTR MaLR -241 124 1 232 343 112 12 chr4 7987574 7987825 -176300837 + L2 LINE L2 2970 3245 -27 198 0 0 0 chr4 7987835 7987857 -176300805 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 396 287 115 6 chr4 7988536 7988710 -176299952 + MIR SINE MIR 70 262 0 203 226 113 0 chr4 7989258 7989311 -176299351 - L2 LINE L2 -40 3232 3174 677 248 26 9 chr4 7989311 7989527 -176299135 + MIR SINE MIR 14 235 -27 194 230 40 27 chr4 7990300 7990374 -176298288 - L2 LINE L2 -8 3264 3190 1170 121 11 0 chr4 7990503 7990677 -176297985 - THE1C LTR MaLR 0 375 200 1067 101 0 0 chr4 7990834 7990982 -176297680 - THE1C LTR MaLR -226 149 2 1803 91 0 13 chr4 7991450 7991701 -176296961 + AluSx SINE Alu 58 305 0 304 116 0 163 chr4 7991706 7991741 -176296921 - L1ME4a LINE L1 -1 6120 6105 2219 128 0 0 chr4 7991741 7992045 -176296617 + AluSx SINE Alu 1 304 -8 304 116 0 163 chr4 7992045 7992095 -176296567 - L1ME4a LINE L1 -16 6105 6049 255 250 18 36 chr4 7992172 7992284 -176296378 + (TCTA)n Simple_repeat Simple_repeat 4 113 0 192 163 0 0 chr4 7992286 7992329 -176296333 + GA-rich Low_complexity Low_complexity 2 44 0 234 293 13 0 chr4 7992376 7992451 -176296211 - L1ME4a LINE L1 -258 5863 5788 640 122 0 0 chr4 7992489 7992601 -176296061 - AluSx SINE Alu 0 305 194 1111 106 0 0 chr4 7992602 7992743 -176295919 - AluSx SINE Alu -172 141 1 278 349 108 5 chr4 7992927 7993122 -176295540 + MIR SINE MIR 14 228 -34 193 254 15 30 chr4 7993720 7993787 -176294875 + MIR SINE MIR 81 146 -62 185 324 45 18 chr4 7994195 7994306 -176294356 - MIR3 SINE MIR -92 116 3 364 296 113 31 chr4 7994414 7994573 -176294089 + MIR3 SINE MIR 15 186 -22 2123 120 0 7 chr4 7994764 7995055 -176293607 - AluJb SINE Alu -23 289 1 291 256 26 13 chr4 7995093 7995201 -176293461 + MIR SINE MIR 38 140 -68 228 258 16 16 chr4 7995716 7995778 -176292884 + L2 LINE L2 3191 3252 -20 254 289 72 0 chr4 7996509 7996592 -176292070 + MIR SINE MIR 32 120 -142 181 282 100 27 chr4 7997158 7997268 -176291394 - MIR SINE MIR -68 140 23 469 276 73 55 chr4 7997621 7997718 -176290944 + L1MC4 LINE L1 7685 7779 -263 273 57 0 0 chr4 7997718 7997753 -176290909 + (TATG)n Simple_repeat Simple_repeat 2 36 0 1574 124 128 23 chr4 7997753 7998011 -176290651 - AluSx SINE Alu -27 285 1 469 276 73 55 chr4 7998011 7998256 -176290406 + L1MC4 LINE L1 7778 8034 -8 194 250 62 0 chr4 7998778 7998842 -176289820 + L2 LINE L2 2994 3061 -211 524 168 0 9 chr4 8000325 8000432 -176288230 + (TGG)n Simple_repeat Simple_repeat 1 106 0 648 109 79 0 chr4 8000539 8000675 -176287987 + AluSg/x SINE Alu 171 314 0 230 236 18 0 chr4 8000676 8000731 -176287931 + L1ME4a LINE L1 5607 5662 -459 180 77 0 0 chr4 8000983 8001009 -176287653 + (TATG)n Simple_repeat Simple_repeat 3 28 0 332 324 91 17 chr4 8001161 8001337 -176287325 + L1ME4a LINE L1 5930 6118 -3 1942 127 0 39 chr4 8001490 8001807 -176286855 - AluSx SINE Alu 0 316 11 934 192 315 45 chr4 8001960 8002335 -176286327 - L1MD2 LINE L1 -22 6337 5862 224 366 142 6 chr4 8002524 8002707 -176285955 - MIR SINE MIR -17 245 38 341 293 34 27 chr4 8002723 8002870 -176285792 - MIR3 SINE MIR -58 150 3 507 254 154 29 chr4 8002920 8003041 -176285621 + MIR SINE MIR 4 109 -153 2264 115 7 0 chr4 8003041 8003345 -176285317 - AluSx SINE Alu -6 306 1 507 254 154 29 chr4 8003345 8003455 -176285207 + MIR SINE MIR 109 262 0 293 239 99 0 chr4 8003477 8003548 -176285114 + MIR SINE MIR 31 108 -154 1915 157 40 0 chr4 8003577 8003877 -176284785 + AluJb SINE Alu 1 312 0 397 318 163 25 chr4 8004343 8004472 -176284190 + L2 LINE L2 2920 3030 -242 1490 189 9 60 chr4 8004472 8004790 -176283872 - AluJo SINE Alu -10 302 1 397 318 163 25 chr4 8004790 8004937 -176283725 + L2 LINE L2 3030 3234 -38 1045 216 110 49 chr4 8005301 8005709 -176282953 + MLT1C LTR MaLR 25 463 -4 442 290 97 5 chr4 8005716 8005902 -176282760 - MIR SINE MIR -57 205 3 259 207 52 0 chr4 8006001 8006059 -176282603 - L3 LINE CR1 -182 1395 1335 376 269 19 0 chr4 8006308 8006416 -176282246 + MER69 DNA AcHobo 64 173 -1053 * 1909 163 67 0 chr4 8006412 8006768 -176281894 - MLT1B LTR MaLR -10 380 1 567 259 56 16 chr4 8006769 8007066 -176281596 + MER69 DNA AcHobo 166 528 -1998 184 265 60 99 chr4 8007152 8007303 -176281359 + MER5A DNA MER1_type 38 182 -7 1327 229 81 28 chr4 8007388 8007894 -176280768 + MER69 DNA AcHobo 1989 2521 -5 357 292 119 69 chr4 8007901 8008002 -176280660 + MLT1J LTR MaLR 16 111 -400 2234 128 0 0 chr4 8008002 8008299 -176280363 + AluSx SINE Alu 1 297 -15 357 292 119 69 chr4 8008299 8008660 -176280002 + MLT1J LTR MaLR 111 501 -10 1977 186 13 55 chr4 8008674 8009132 -176279530 - MLT1C LTR MaLR -23 444 6 801 254 118 16 chr4 8009397 8009712 -176278950 + MLT1I LTR MaLR 63 409 0 466 250 16 16 chr4 8009955 8010083 -176278579 + L2 LINE L2 3180 3307 -6 194 318 18 36 chr4 8010208 8010318 -176278344 + MIR SINE MIR 41 148 -114 194 0 39 0 chr4 8010636 8010662 -176278000 + (CGGGGG)n Simple_repeat Simple_repeat 3 29 0 188 289 0 0 chr4 8011787 8011839 -176276823 + L3 LINE CR1 1022 1073 -504 393 298 140 0 chr4 8011839 8012017 -176276645 + L3 LINE CR1 1333 1535 -42 392 231 196 7 chr4 8012529 8012672 -176275990 - MER5A DNA MER1_type -6 183 14 284 257 57 19 chr4 8012918 8013023 -176275639 + LTR16C LTR ERVL 353 461 -30 650 300 23 9 chr4 8013583 8013803 -176274859 + MIR SINE MIR 21 243 -19 1007 231 5 0 chr4 8013880 8014083 -176274579 - MER58A DNA MER1_type 0 224 21 410 303 130 35 chr4 8015691 8015975 -176272687 + L2 LINE L2 3003 3313 0 282 295 49 25 chr4 8016315 8016437 -176272225 + MIR SINE MIR 60 184 -78 250 214 60 86 chr4 8016464 8016581 -176272081 + L2 LINE L2 3016 3129 -143 247 166 33 44 chr4 8016633 8016814 -176271848 + (CA)n Simple_repeat Simple_repeat 2 180 0 194 191 43 21 chr4 8017489 8017536 -176271126 + MIR3 SINE MIR 114 161 -47 617 242 47 43 chr4 8017569 8017780 -176270882 - L1MB7 LINE L1 -14 6166 5953 448 243 96 0 chr4 8017887 8018064 -176270598 + MIR SINE MIR 50 243 -19 2215 207 48 95 chr4 8018257 8018948 -176269714 + L1MB8 LINE L1 5480 6136 -42 1657 180 25 3 chr4 8018948 8019266 -176269396 - AluJb SINE Alu 0 312 1 2215 207 48 95 chr4 8019266 8019308 -176269354 + L1MB8 LINE L1 6136 6178 0 234 305 195 0 chr4 8019991 8020109 -176268553 + L1ME LINE L1 5542 5682 -439 259 229 38 0 chr4 8021060 8021357 -176267305 + (CACCT)n Simple_repeat Simple_repeat 1 308 0 214 241 12 0 chr4 8021389 8021555 -176267107 + (CACCT)n Simple_repeat Simple_repeat 4 171 0 301 375 52 30 chr4 8021963 8022366 -176266296 - L2 LINE L2 -562 2752 2341 529 270 65 56 chr4 8022886 8023101 -176265561 - MIR SINE MIR -34 228 12 840 1206 2611 3672 chr4 8023394 8023428 -176265234 - MLT1D LTR MaLR 0 505 437 14081 127 47 8 chr4 8023428 8025553 -176263109 + Tigger1 DNA MER2_type 1 2227 -191 1838 103 38 75 chr4 8025553 8025873 -176262789 - AluSx SINE Alu 0 309 1 14081 127 47 8 chr4 8025873 8026073 -176262589 + Tigger1 DNA MER2_type 2227 2418 0 840 1206 2611 3672 chr4 8026073 8026483 -176262179 - MLT1D LTR MaLR -68 437 1 264 159 48 0 chr4 8027084 8027147 -176261515 + MIR SINE MIR 59 124 -138 326 322 34 27 chr4 8027238 8027384 -176261278 + MIR SINE MIR 116 262 0 531 242 48 0 chr4 8027754 8027878 -176260784 + MER45A DNA AcHobo 2 131 -47 3902 211 3 25 chr4 8028273 8028883 -176259779 + L1MB7 LINE L1 5352 5940 -244 1950 155 0 32 chr4 8028883 8029199 -176259463 + AluJb SINE Alu 1 306 -6 3902 211 3 25 chr4 8029199 8029439 -176259223 + L1MB7 LINE L1 5940 6184 0 1519 253 66 2 chr4 8029450 8029877 -176258785 + MLT1C LTR MaLR 6 459 -8 342 0 0 0 chr4 8029878 8029916 -176258746 + (TG)n Simple_repeat Simple_repeat 1 38 0 299 339 25 8 chr4 8030146 8030267 -176258395 + L2 LINE L2 3181 3303 -10 234 271 0 0 chr4 8031013 8031072 -176257590 + MIR SINE MIR 92 150 -112 181 274 68 14 chr4 8031970 8032043 -176256619 - MIR SINE MIR -73 135 59 627 282 35 10 chr4 8032189 8032391 -176256271 + MIR SINE MIR 44 250 -12 317 318 54 8 chr4 8032508 8032637 -176256025 - L2 LINE L2 -23 3249 3115 184 161 0 0 chr4 8033057 8033088 -176255574 + L2 LINE L2 3264 3294 -19 628 121 0 0 chr4 8033931 8034022 -176254640 - AluJb SINE Alu -23 289 199 443 74 0 158 chr4 8034123 8034218 -176254444 + MADE1 DNA Mariner 1 80 0 1200 223 57 38 chr4 8034906 8035273 -176253389 + MLT1A2 LTR MaLR 1 374 0 1360 146 10 5 chr4 8035289 8035511 -176253151 - AluJb SINE Alu 0 308 86 618 280 50 0 chr4 8035635 8035817 -176252845 + MIR SINE MIR 1 191 -71 789 200 87 20 chr4 8036002 8036197 -176252465 + MLT1J LTR MaLR 190 397 -114 509 268 153 10 chr4 8037243 8037452 -176251210 + MIR SINE MIR 24 262 0 349 255 10 31 chr4 8037589 8037687 -176250975 + MIR SINE MIR 97 192 -70 1510 200 31 7 chr4 8037764 8038054 -176250608 + AluJo SINE Alu 1 297 -15 212 330 29 19 chr4 8038123 8038226 -176250436 - MIR3 SINE MIR -14 194 91 330 272 57 40 chr4 8038416 8038714 -176249948 + L1M4 LINE L1 4744 5046 -1100 1422 272 50 75 chr4 8038995 8039542 -176249120 + L1MEd LINE L1 493 1012 -5193 649 222 0 0 chr4 8039542 8039694 -176248968 + FLAM_A SINE Alu 1 152 0 1422 272 50 75 chr4 8039694 8040014 -176248648 + L1MEd LINE L1 1012 1339 -4866 567 248 19 6 chr4 8040124 8040285 -176248377 + MER104 DNA Tc2 1 163 -17 228 217 24 24 chr4 8040310 8040393 -176248269 + HAL1 LINE L1 1490 1572 -935 1016 335 44 26 chr4 8040430 8041161 -176247501 + L1MEc LINE L1 107 850 -5546 348 231 23 95 chr4 8041155 8041376 -176247286 + L1MEc LINE L1 2838 3042 -3173 * 806 178 89 0 chr4 8041407 8041598 -176247064 - L1MB3 LINE L1 -143 6040 5833 362 296 86 39 chr4 8041755 8042162 -176246500 + L1MEd LINE L1 2093 2480 -3735 30 0 0 0 chr4 8043001 8043031 -176245631 + GC_rich Low_complexity Low_complexity 1 30 0 258 160 200 10 chr4 8044969 8045069 -176243593 + MIR SINE MIR 27 145 -117 323 281 144 14 chr4 8045157 8045303 -176243359 + MIR SINE MIR 24 188 -74 270 273 67 16 chr4 8045477 8045612 -176243050 + MIR SINE MIR 11 152 -56 2342 87 7 23 chr4 8045874 8046183 -176242479 - AluSq SINE Alu -9 304 1 244 111 0 0 chr4 8046515 8046551 -176242111 + MADE1 DNA Mariner 8 43 -37 763 220 48 0 chr4 8046820 8046988 -176241674 + MER58A DNA MER1_type 49 224 0 335 349 48 0 chr4 8047179 8047305 -176241357 - L1 LINE L1 -3309 2837 2706 542 193 16 0 chr4 8047326 8047464 -176241198 - L1MB4 LINE L1 -6 6177 6035 313 280 38 48 chr4 8047532 8047676 -176240986 + MIR SINE MIR 2 147 -62 1785 203 53 36 chr4 8048448 8048915 -176239747 - L1MB5 LINE L1 -6 6168 5694 193 386 47 0 chr4 8049182 8049309 -176239353 + L2 LINE L2 2882 3014 -258 2014 159 38 28 chr4 8049309 8049864 -176238798 - MLT2A2 LTR ERVL 0 554 1 326 256 195 46 chr4 8049866 8050128 -176238534 + L2 LINE L2 3013 3313 0 286 313 47 16 chr4 8050111 8050239 -176238423 + MIR SINE MIR 43 174 -88 * 987 195 56 53 chr4 8050420 8050522 -176238140 + MER33 DNA MER1_type 1 101 -2484 2334 88 0 0 chr4 8050522 8050841 -176237821 + AluSq SINE Alu 1 319 0 987 195 56 53 chr4 8050841 8051060 -176237602 + MER33 DNA MER1_type 101 324 0 343 237 4 24 chr4 8051120 8051221 -176237441 + MIR SINE MIR 61 162 -46 459 295 53 14 chr4 8052317 8052524 -176236138 + L1MA9 LINE L1 6041 6255 -57 464 274 79 70 chr4 8052881 8053209 -176235453 + L2 LINE L2 2928 3258 -14 191 261 67 60 chr4 8053221 8053355 -176235307 - L3 LINE CR1 -3 1574 1440 2653 217 18 36 chr4 8054800 8054990 -176233672 + L1MEc LINE L1 2140 2332 -3883 2151 154 25 3 chr4 8054990 8055347 -176233315 - MLT1A1 LTR MaLR 0 365 1 2653 217 18 36 chr4 8055347 8055625 -176233037 + L1MEc LINE L1 2332 2613 -3602 2017 159 0 7 chr4 8055625 8055927 -176232735 + AluJb SINE Alu 1 300 -12 2653 217 18 36 chr4 8055927 8056280 -176232382 + L1MEc LINE L1 2613 2905 -3310 607 253 27 32 chr4 8056974 8057095 -176231567 + MER5A DNA MER1_type 2 123 -66 2563 51 0 3 chr4 8057095 8057389 -176231273 - AluY SINE Alu -18 293 1 607 253 27 32 chr4 8057389 8057453 -176231209 + MER5A DNA MER1_type 123 186 -3 1892 226 72 53 chr4 8057477 8058020 -176230642 - MLT2B3 LTR ERVL 0 554 2 189 146 49 49 chr4 8058550 8058591 -176230071 + MIR SINE MIR 106 146 -62 2053 108 0 14 chr4 8059227 8059536 -176229126 - AluSx SINE Alu 0 312 24 1054 171 6 0 chr4 8259549 8259730 -176028932 + AluSg/x SINE Alu 130 311 -1 564 234 71 0 chr4 8259730 8259884 -176028778 + L1MB8 LINE L1 4535 4699 -1447 * 737 206 5 62 chr4 8259853 8260062 -176028600 + L1MB8 LINE L1 5933 6129 -49 1812 141 7 18 chr4 8260129 8260406 -176028256 - AluJb SINE Alu -34 278 5 25 31 0 0 chr4 8261601 8261633 -176027029 + GC_rich Low_complexity Low_complexity 1 32 0 243 216 0 88 chr4 8261760 8261885 -176026777 + G-rich Low_complexity Low_complexity 6 119 0 425 260 11 33 chr4 8261919 8262100 -176026562 + G-rich Low_complexity Low_complexity 3 179 0 369 272 18 64 chr4 8262120 8262532 -176026130 + G-rich Low_complexity Low_complexity 1 393 0 253 275 18 42 chr4 8262661 8262828 -176025834 + (GGGTG)n Simple_repeat Simple_repeat 3 165 0 409 300 146 35 chr4 8263205 8263492 -176025170 + L1MC3 LINE L1 7467 7785 0 2489 53 0 34 chr4 8263775 8264097 -176024565 - AluY SINE Alu 0 311 1 1723 99 110 58 chr4 8264099 8264240 -176024422 - AluSc SINE Alu -2 307 175 261 0 0 0 chr4 8264240 8264269 -176024393 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1888 112 22 0 chr4 8264273 8264540 -176024122 - AluSg SINE Alu -35 275 3 1723 99 110 58 chr4 8264540 8264685 -176023977 - AluSc SINE Alu -136 173 1 1240 86 145 68 chr4 8264687 8264830 -176023832 - AluSx SINE Alu -3 309 140 2070 106 0 3 chr4 8264830 8265113 -176023549 - AluSg SINE Alu -24 286 5 1240 86 145 68 chr4 8265113 8265203 -176023459 - AluSx SINE Alu -172 140 58 2227 100 10 0 chr4 8265232 8265541 -176023121 - AluSx SINE Alu 0 312 1 1947 69 102 4 chr4 8266116 8266390 -176022272 - AluY SINE Alu -10 301 1 568 300 40 4 chr4 8267477 8267704 -176020958 + MER90 LTR ERV1 30 264 -311 893 332 93 59 chr4 8268130 8268339 -176020323 - L1M4 LINE L1 -803 5343 5143 2081 113 0 17 chr4 8268339 8268641 -176020021 - AluSg SINE Alu -13 297 1 893 332 93 59 chr4 8268641 8269223 -176019439 - L1M4 LINE L1 -1003 5143 4525 2307 100 0 0 chr4 8269223 8269522 -176019140 + AluSq SINE Alu 1 299 -14 779 147 17 2 chr4 8269537 8269768 -176018894 + AluJo SINE Alu 8 299 -13 2339 80 13 10 chr4 8269801 8270113 -176018549 - AluSp SINE Alu 0 313 1 2364 86 0 3 chr4 8270113 8270416 -176018246 - AluSp SINE Alu -11 302 1 1782 147 42 0 chr4 8270450 8270736 -176017926 + AluSx SINE Alu 1 298 -14 2395 87 0 3 chr4 8270795 8271107 -176017555 - AluSx SINE Alu -1 311 1 424 352 100 18 chr4 8273104 8273445 -176015217 + L1M4 LINE L1 4622 4990 -1156 2179 93 7 7 chr4 8273448 8273748 -176014914 + AluSx SINE Alu 1 300 -12 1455 161 59 22 chr4 8273874 8273910 -176014752 - MER34B LTR ERV1 0 565 532 1950 125 14 0 chr4 8273910 8274221 -176014441 - AluSx SINE Alu 0 315 1 1455 161 59 22 chr4 8274221 8274505 -176014157 - MER34B LTR ERV1 -33 532 232 1800 146 58 48 chr4 8274506 8274884 -176013778 - MSTB LTR MaLR -1 425 44 533 138 0 0 chr4 8274998 8275085 -176013577 - MSTB LTR MaLR -339 87 1 521 194 46 0 chr4 8275085 8275193 -176013469 - MER34B LTR ERV1 -329 236 124 2730 234 57 34 chr4 8275193 8275892 -176012770 + L1M4 LINE L1 3877 4559 -1587 2201 99 7 0 chr4 8275892 8276184 -176012478 - AluSc SINE Alu -15 294 1 2730 234 57 34 chr4 8276184 8276294 -176012368 + L1M4 LINE L1 4559 4665 -1481 2164 113 23 0 chr4 8276294 8276594 -176012068 + AluSx SINE Alu 1 307 -5 2730 234 57 34 chr4 8276594 8276751 -176011911 + L1M4 LINE L1 4665 4866 -1280 4286 171 47 37 chr4 8276765 8277065 -176011597 - L1MB5 LINE L1 -17 6157 5861 2368 57 7 0 chr4 8277065 8277362 -176011300 - AluY SINE Alu -10 301 3 4286 171 47 37 chr4 8277362 8277722 -176010940 - L1MB5 LINE L1 -313 5861 5506 2415 68 13 0 chr4 8277722 8278029 -176010633 - AluY SINE Alu 0 311 1 4286 171 47 37 chr4 8278029 8278364 -176010298 - L1MB5 LINE L1 -668 5506 5153 2072 112 0 3 chr4 8278364 8278716 -176009946 - AluSq SINE Alu 0 351 1 4286 171 47 37 chr4 8278716 8278886 -176009776 - L1MB5 LINE L1 -1021 5153 4986 864 244 52 36 chr4 8278891 8279198 -176009464 + L1M4 LINE L1 4849 5160 -986 1010 114 14 123 chr4 8279741 8279952 -176008710 + AluSg/x SINE Alu 115 302 -8 1050 185 42 75 chr4 8279952 8280104 -176008558 - MLT1A1 LTR MaLR -66 299 161 2131 91 14 0 chr4 8280104 8280390 -176008272 - AluSx SINE Alu -22 290 1 1050 185 42 75 chr4 8280390 8280545 -176008117 - MLT1A1 LTR MaLR -204 161 2 2426 44 7 3 chr4 8280677 8280974 -176007688 + AluY SINE Alu 3 300 -11 223 122 73 0 chr4 8281247 8281288 -176007374 - MIR SINE MIR -56 152 109 390 349 48 26 chr4 8281752 8281941 -176006721 + MIR SINE MIR 51 243 -19 6229 93 12 3 chr4 8282512 8283360 -176005302 - LTR5 LTR ERVK 0 969 115 454 86 43 0 chr4 8283360 8283430 -176005232 - LTR5 LTR ERVK -896 73 1 347 228 11 33 chr4 8284887 8284979 -176003683 - MIR SINE MIR -114 148 59 182 335 52 29 chr4 8287442 8287615 -176001047 + L2 LINE L2 2932 3108 -164 753 241 201 25 chr4 8288742 8289095 -175999567 - MLT1C LTR MaLR 0 467 53 248 57 5 153 chr4 8293657 8293866 -175994796 + (CACCC)n Simple_repeat Simple_repeat 1 178 0 * 320 116 6 81 chr4 8293818 8293990 -175994672 + (CCCCCA)n Simple_repeat Simple_repeat 3 161 0 1357 120 0 0 chr4 8297617 8297808 -175990854 + AluSq SINE Alu 116 306 -7 3143 169 90 15 chr4 8297810 8298430 -175990232 - L1MB3 LINE L1 -23 6160 5483 2096 95 0 74 chr4 8298430 8298768 -175989894 - AluSq SINE Alu 0 313 1 3143 169 90 15 chr4 8298768 8298827 -175989835 - L1MB3 LINE L1 -700 5483 5430 288 0 0 0 chr4 8298850 8298882 -175989780 + (CA)n Simple_repeat Simple_repeat 2 33 0 249 242 15 0 chr4 8299077 8299143 -175989519 - L1ME3A LINE L1 -26 6144 6078 203 105 53 0 chr4 8299231 8299269 -175989393 + GA-rich Low_complexity Low_complexity 3 42 0 191 39 19 77 chr4 8299648 8299700 -175988962 + (CGGGG)n Simple_repeat Simple_repeat 1 49 0 28 86 0 0 chr4 8299911 8299981 -175988681 + GC_rich Low_complexity Low_complexity 1 70 0 327 89 30 0 chr4 8301174 8301242 -175987420 + Alu SINE Alu 1 48 -255 184 288 68 41 chr4 8401882 8401955 -175886707 - L2 LINE L2 -5 3267 3193 527 223 173 50 chr4 8402217 8402437 -175886225 - MIR SINE MIR -9 253 7 403 283 171 52 chr4 8403534 8403927 -175884735 - L1MC5 LINE L1 -73 7888 7441 1909 108 0 15 chr4 8403927 8404187 -175884475 - AluSx SINE Alu -2 310 55 403 283 171 52 chr4 8404187 8404213 -175884449 - L1MC5 LINE L1 -520 7441 7419 259 313 20 33 chr4 8404352 8404502 -175884160 + MIR SINE MIR 64 211 -51 473 216 124 27 chr4 8404862 8405047 -175883615 - MLT1I LTR MaLR -204 205 64 202 348 16 32 chr4 8405268 8405518 -175883144 - L2 LINE L2 -211 3061 2816 450 286 157 77 chr4 8405645 8405926 -175882736 - L1ME4a LINE L1 -7 6114 5857 1980 189 40 11 chr4 8405926 8406301 -175882361 - MLT1B LTR MaLR -4 386 1 450 286 157 77 chr4 8406301 8406529 -175882133 - L1ME4a LINE L1 -264 5857 5564 861 176 0 0 chr4 8406631 8406773 -175881889 - AluSg/x SINE Alu -15 297 156 1253 229 196 5 chr4 8407020 8407392 -175881270 + MLT1G1 LTR MaLR 151 593 -2 3392 190 45 39 chr4 8407736 8407827 -175880835 + Tigger6a DNA MER2_type 225 314 -1283 2227 146 16 11 chr4 8407827 8408190 -175880472 + MLT1A1 LTR MaLR 1 365 0 3392 190 45 39 chr4 8408190 8408762 -175879900 + Tigger6a DNA MER2_type 314 881 -716 2228 117 0 7 chr4 8408762 8409061 -175879601 + AluJo SINE Alu 1 297 -15 3392 190 45 39 chr4 8409061 8409208 -175879454 + Tigger6a DNA MER2_type 881 1036 -561 2039 133 3 3 chr4 8409208 8409509 -175879153 - AluSx SINE Alu -11 301 1 3392 190 45 39 chr4 8409509 8409558 -175879104 + Tigger6a DNA MER2_type 1036 1083 0 260 321 54 9 chr4 8410074 8410186 -175878476 - L1ME4a LINE L1 -30 6091 5975 352 263 59 59 chr4 8410201 8410353 -175878309 - L1ME4a LINE L1 -226 5895 5744 230 266 0 0 chr4 8411635 8411699 -175876963 - MIR SINE MIR -123 139 76 823 285 70 12 chr4 8411709 8412236 -175876426 - MLT1H1 LTR MaLR -12 543 1 243 125 0 0 chr4 8413880 8413920 -175874742 + MIR SINE MIR 107 146 -62 343 305 49 58 chr4 8415182 8415405 -175873257 - L2 LINE L2 -30 3242 3022 198 318 91 0 chr4 8415401 8415489 -175873173 - L2 LINE L2 -4 3309 3214 * 394 331 7 22 chr4 8416205 8416344 -175872318 - MIR SINE MIR -117 145 9 21 0 0 0 chr4 8416981 8417002 -175871660 + AT_rich Low_complexity Low_complexity 1 21 0 492 137 0 14 chr4 8418080 8418153 -175870509 - AluS SINE Alu -240 73 2 343 306 30 0 chr4 8418153 8418287 -175870375 + MIR SINE MIR 113 250 -12 248 322 11 0 chr4 8418627 8418714 -175869948 - MIR SINE MIR -132 130 43 189 0 0 0 chr4 8418894 8418915 -175869747 + (TGGGGG)n Simple_repeat Simple_repeat 3 23 0 202 289 66 0 chr4 8419600 8419676 -175868986 + MIR SINE MIR 105 185 -77 310 339 48 0 chr4 8419862 8419986 -175868676 - MIR SINE MIR -44 218 89 427 269 9 99 chr4 8420243 8420455 -175868207 - MIR SINE MIR -45 217 25 827 188 7 7 chr4 8420693 8420863 -175867799 - FRAM SINE Alu 0 167 1 2014 137 0 13 chr4 8421214 8421528 -175867134 - AluJb SINE Alu 0 312 3 267 349 28 9 chr4 8421991 8422100 -175866562 + MIR SINE MIR 117 227 -35 405 338 25 6 chr4 8422706 8422866 -175865796 - MIR SINE MIR -80 182 20 196 300 33 0 chr4 8423440 8423500 -175865162 + MIR SINE MIR 92 153 -55 935 245 17 12 chr4 8423590 8423831 -175864831 + MIR SINE MIR 14 255 -7 910 306 43 10 chr4 8425247 8425639 -175863023 + LTR16C LTR ERVL 82 486 -5 329 314 51 22 chr4 8428928 8429065 -175859597 + MIR3 SINE MIR 64 204 -4 242 347 107 0 chr4 8429387 8429508 -175859154 - Charlie8 DNA MER1_type -2247 170 37 1030 206 55 32 chr4 8429560 8429778 -175858884 + MER58A DNA MER1_type 2 224 0 2198 173 8 6 chr4 8430173 8430537 -175858125 - MLT1A1 LTR MaLR 0 365 1 594 325 91 52 chr4 8430929 8431465 -175857197 + HAL1b LINE L1 82 384 -1033 538 253 70 54 chr4 8431486 8431727 -175856935 + L1MC4a LINE L1 5292 5536 -2272 2203 125 0 0 chr4 8431774 8432086 -175856576 + AluSx SINE Alu 1 312 0 446 302 85 0 chr4 8432104 8432316 -175856346 + L1MC4a LINE L1 5674 5903 -1905 795 278 75 4 chr4 8432529 8432770 -175855892 + MIR SINE MIR 4 261 -1 190 308 158 14 chr4 8432827 8432973 -175855689 - L2 LINE L2 -117 3155 2989 2354 127 48 17 chr4 8433215 8433631 -175855031 - Tigger2a DNA MER2_type -5 429 1 773 237 121 16 chr4 8433633 8433890 -175854772 + MER46C DNA MER2_type 26 309 -29 204 311 78 0 chr4 8434121 8434224 -175854438 - L2 LINE L2 -581 2733 2623 1503 186 130 6 chr4 8434306 8434628 -175854034 + MLT1A1 LTR MaLR 1 362 -3 403 323 43 12 chr4 8435072 8435233 -175853429 - MER63A DNA MER1_type -3 207 42 2252 103 0 0 chr4 8435481 8435792 -175852870 - AluSx SINE Alu -1 311 1 308 221 213 52 chr4 8436053 8436189 -175852473 + MIR SINE MIR 14 171 -91 206 246 49 0 chr4 8436431 8436492 -175852170 + MIR SINE MIR 58 121 -87 1205 229 5 0 chr4 8437236 8437459 -175851203 + MER58A DNA MER1_type 1 224 0 342 265 62 37 chr4 8437497 8437659 -175851003 + MIR SINE MIR 11 176 -86 257 258 61 0 chr4 8438431 8438497 -175850165 + MIR SINE MIR 123 192 -70 350 211 56 0 chr4 8439165 8439236 -175849426 - L2 LINE L2 -1 3271 3197 490 150 42 0 chr4 8440484 8440604 -175848058 + (CA)n Simple_repeat Simple_repeat 2 126 0 573 318 26 0 chr4 8441364 8441559 -175847103 - MIR SINE MIR -34 228 29 285 51 0 0 chr4 8442478 8442517 -175846145 + (CCCTAA)n Simple_repeat Simple_repeat 5 43 0 407 268 91 103 chr4 8442597 8442914 -175845748 + L2 LINE L2 2922 3235 -78 2194 112 6 6 chr4 8442914 8443226 -175845436 + AluSx SINE Alu 1 312 0 407 268 91 103 chr4 8443226 8443304 -175845358 + L2 LINE L2 3235 3312 -1 2642 111 16 5 chr4 8443564 8443950 -175844712 + MLT1B LTR MaLR 1 390 0 261 292 7 73 chr4 8443991 8444128 -175844534 - MIR SINE MIR -111 151 24 1462 217 119 14 chr4 8446419 8446788 -175841874 + MLT1C LTR MaLR 59 466 -1 352 198 49 0 chr4 8446878 8446959 -175841703 - MER58C DNA MER1_type -16 199 115 1889 108 0 34 chr4 8446960 8447255 -175841407 - AluSx SINE Alu 0 312 28 249 226 60 12 chr4 8447269 8447353 -175841309 - MER58 DNA MER1_type -70 145 58 237 247 22 56 chr4 8447512 8447601 -175841061 + L2 LINE L2 3185 3270 -2 372 293 67 30 chr4 8447952 8448116 -175840546 + MIR SINE MIR 15 184 -78 377 238 25 17 chr4 8448279 8448407 -175840255 - MIR SINE MIR -58 150 35 415 227 134 0 chr4 8450026 8450145 -175838517 + MIR SINE MIR 15 149 -113 196 370 16 8 chr4 8450231 8450358 -175838304 - L2 LINE L2 -882 2432 2305 652 298 93 0 chr4 8450428 8450686 -175837976 + L3 LINE CR1 1271 1552 -25 294 311 21 10 chr4 8451558 8451699 -175836963 - MIR SINE MIR -69 139 11 212 329 12 12 chr4 8451755 8451840 -175836822 + MIR SINE MIR 108 192 -70 402 21 0 0 chr4 8452278 8452325 -175836337 + (CA)n Simple_repeat Simple_repeat 2 48 0 227 293 40 10 chr4 8452541 8452640 -175836022 + MIR SINE MIR 34 135 -127 376 351 0 6 chr4 8453056 8453230 -175835432 + (TG)n Simple_repeat Simple_repeat 1 173 0 2119 151 11 3 chr4 8453343 8453694 -175834968 - MLT1A1 LTR MaLR 0 365 12 213 288 45 0 chr4 8453826 8453892 -175834770 + MIR SINE MIR 45 113 -95 247 354 27 4 chr4 8453963 8454120 -175834542 + MIR SINE MIR 84 246 -16 213 159 0 0 chr4 8454401 8454445 -175834217 - MIR SINE MIR -41 221 178 2488 65 0 0 chr4 8454544 8454851 -175833811 + AluY SINE Alu 1 307 -4 638 250 0 73 chr4 8455108 8455224 -175833438 + MIR SINE MIR 35 134 -128 1859 130 0 11 chr4 8455224 8455554 -175833108 + AluJb SINE Alu 1 327 0 638 250 0 73 chr4 8455554 8455628 -175833034 + MIR SINE MIR 134 212 -50 266 293 116 0 chr4 8456440 8456587 -175832075 - L2 LINE L2 -215 3057 2894 218 350 26 17 chr4 8456597 8456714 -175831948 + MIR SINE MIR 33 150 -58 249 337 123 6 chr4 8457643 8457806 -175830856 + MER5A DNA MER1_type 7 188 -1 1375 205 91 3 chr4 8458264 8458561 -175830101 - MER33 DNA MER1_type -1 323 1 2126 98 7 19 chr4 8458696 8459003 -175829659 + AluSx SINE Alu 1 303 -9 857 237 142 42 chr4 8459191 8459593 -175829069 - MLT1D LTR MaLR -16 451 31 1670 125 3 96 chr4 8459603 8459947 -175828715 - AluSx SINE Alu 0 312 1 218 343 0 0 chr4 8460264 8460337 -175828325 + MIR SINE MIR 180 252 -10 412 294 94 31 chr4 8461132 8461292 -175827370 + MIR SINE MIR 61 230 -32 576 327 25 15 chr4 8461324 8461526 -175827136 - MIR SINE MIR -23 239 36 199 245 147 39 chr4 8461704 8461806 -175826856 + MER5A DNA MER1_type 47 159 -30 300 255 36 31 chr4 8462330 8462456 -175826206 - MIR3 SINE MIR -114 94 10 2004 100 0 0 chr4 8462505 8462776 -175825886 - AluSx SINE Alu -2 310 40 306 336 97 26 chr4 8463612 8463838 -175824824 + L2 LINE L2 2994 3235 -37 268 178 27 14 chr4 8463865 8463938 -175824724 + GA-rich Low_complexity Low_complexity 1 74 0 630 283 5 56 chr4 8464297 8464495 -175824167 - MIR SINE MIR -69 193 6 1688 148 64 27 chr4 8465833 8466237 -175822425 - Charlie1 DNA MER1_type 0 2761 2343 271 262 0 0 chr4 8466244 8466305 -175822357 - Charlie1 DNA MER1_type -2700 61 1 2487 266 57 23 chr4 8467147 8468575 -175820087 - L1ME1 LINE L1 -26 6140 4665 522 251 95 6 chr4 8468587 8468766 -175819896 - MIR SINE MIR -59 203 9 377 241 0 0 chr4 8469346 8469425 -175819237 - MER63 DNA MER1_type -5 1057 979 354 245 23 23 chr4 8469451 8469614 -175819048 - MER63 DNA MER1_type -9 1679 39 283 348 18 9 chr4 8469671 8469783 -175818879 + MIR SINE MIR 108 220 -42 194 250 62 0 chr4 8469986 8470050 -175818612 + MIR SINE MIR 114 181 -81 373 366 52 0 chr4 8470933 8471105 -175817557 + L2 LINE L2 3092 3272 0 413 313 101 0 chr4 8471198 8471415 -175817247 - L2 LINE L2 -537 2777 2539 226 304 0 0 chr4 8471791 8471847 -175816815 - MIR SINE MIR -96 166 111 325 248 155 19 chr4 8472002 8472163 -175816499 - MIR SINE MIR 0 262 80 318 337 101 18 chr4 8472196 8472365 -175816297 - MER5A DNA MER1_type 0 189 7 1449 191 2 97 chr4 8472932 8473357 -175815305 + L1MB5 LINE L1 5790 6174 0 1018 282 133 16 chr4 8473651 8474161 -175814501 + L2 LINE L2 2747 3308 -5 1157 156 6 0 chr4 8474161 8474341 -175814321 - L1MB4 LINE L1 0 6180 6000 306 214 107 24 chr4 8474466 8474550 -175814112 - MIR SINE MIR -73 135 45 247 270 37 10 chr4 8475052 8475153 -175813509 - MIR3 SINE MIR -46 162 57 765 284 47 17 chr4 8476484 8476720 -175811942 + MIR SINE MIR 9 251 -11 346 286 20 82 chr4 8477185 8477332 -175811330 - MIR SINE MIR -71 191 54 1011 214 5 9 chr4 8477489 8477713 -175810949 - MLT1C LTR MaLR 0 467 245 356 105 0 0 chr4 8477719 8477776 -175810886 - Alu SINE Alu -242 57 1 891 235 28 12 chr4 8477790 8478037 -175810625 - MLT1C LTR MaLR -216 251 1 181 265 286 0 chr4 8478422 8478520 -175810142 + MIR SINE MIR 63 188 -74 2413 252 45 57 chr4 8478539 8478555 -175810107 - L1ME LINE L1 -4593 1487 1472 1988 109 29 29 chr4 8478555 8478867 -175809795 - AluSq SINE Alu -1 312 1 2413 252 45 57 chr4 8478867 8480350 -175808312 - L1ME LINE L1 -4608 1472 10 231 235 0 0 chr4 8480352 8480403 -175808259 + MIR SINE MIR 211 261 -1 2163 122 10 0 chr4 8480529 8480833 -175807829 + AluSx SINE Alu 1 307 -5 205 179 0 128 chr4 8480845 8480923 -175807739 - L2 LINE L2 -189 3083 3016 387 307 92 7 chr4 8481393 8481546 -175807116 - MIR SINE MIR -66 196 31 299 307 23 0 chr4 8481575 8481663 -175806999 + MIR SINE MIR 117 206 -56 257 250 50 75 chr4 8481790 8481820 -175806842 - L1ME4a LINE L1 -1 6120 6091 509 189 0 0 chr4 8481820 8481910 -175806752 + L1MA10 LINE L1 6243 6332 -2 257 250 50 75 chr4 8481910 8482039 -175806623 - L1ME4a LINE L1 -30 6091 5965 420 380 121 13 chr4 8482553 8483001 -175805661 - L2 LINE L2 -3 3310 2815 545 218 316 15 chr4 8483457 8483679 -175804983 - L2 LINE L2 -532 2782 2628 369 0 0 0 chr4 8483679 8483720 -175804942 + (TG)n Simple_repeat Simple_repeat 1 41 0 * 486 0 0 0 chr4 8483719 8483773 -175804889 + (GA)n Simple_repeat Simple_repeat 1 54 0 545 218 316 15 chr4 8483720 8483885 -175804777 - L2 LINE L2 -686 2628 2347 296 359 8 0 chr4 8484161 8484292 -175804370 - Charlie8 DNA MER1_type -2213 204 73 246 211 21 21 chr4 8486352 8486447 -175802215 + G-rich Low_complexity Low_complexity 3 97 0 317 295 74 58 chr4 8486537 8486727 -175801935 - MIR SINE MIR -55 207 15 264 358 47 0 chr4 8487419 8487567 -175801095 + MIR SINE MIR 87 241 -21 2176 101 0 13 chr4 8488715 8489022 -175799640 - AluSx SINE Alu -9 303 1 1843 149 3 10 chr4 8489650 8489946 -175798716 + AluJb SINE Alu 9 302 -10 190 365 12 12 chr4 8490024 8490109 -175798553 + MIR SINE MIR 44 128 -134 796 160 42 61 chr4 8490161 8490373 -175798289 - MLT2D LTR ERVL 0 414 207 283 339 85 12 chr4 8490659 8490824 -175797838 + MIR SINE MIR 36 212 -50 295 278 0 75 chr4 8490857 8490990 -175797672 - MIR SINE MIR -112 150 28 303 353 17 8 chr4 8491577 8491696 -175796966 - L2 LINE L2 -20 3252 3133 219 389 45 54 chr4 8491757 8491978 -175796684 + L2 LINE L2 2957 3175 -97 324 240 0 0 chr4 8492466 8492566 -175796096 + (CA)n Simple_repeat Simple_repeat 1 100 0 255 302 29 86 chr4 8492749 8492888 -175795774 - L2 LINE L2 0 3272 3142 240 282 69 23 chr4 8493014 8493145 -175795517 - MLT1J2 LTR MaLR -1 449 313 393 190 25 0 chr4 8493247 8493326 -175795336 - MLT1J LTR MaLR -328 183 103 282 300 0 0 chr4 8493428 8493498 -175795164 - MIR SINE MIR -120 142 73 1031 195 35 35 chr4 8494563 8494824 -175793838 - MIR SINE MIR 0 262 2 248 243 87 78 chr4 8495176 8495279 -175793383 + MIR SINE MIR 28 131 -131 283 270 70 0 chr4 8495876 8495976 -175792686 - MLT1K LTR MaLR -408 180 74 381 292 62 31 chr4 8496086 8496247 -175792415 - MIR3 SINE MIR -32 176 11 302 331 37 7 chr4 8496444 8496580 -175792082 - L2 LINE L2 -1 3271 3132 387 309 24 73 chr4 8496812 8497058 -175791604 + MER113 DNA MER1_type? 9 242 -279 597 258 36 36 chr4 8497067 8497261 -175791401 + MER3 DNA MER1_type 1 194 -15 241 232 211 11 chr4 8497907 8498002 -175790660 - L2 LINE L2 -3 3310 3197 547 240 223 26 chr4 8498073 8498302 -175790360 - L2 LINE L2 -2106 1208 935 221 369 70 16 chr4 8499405 8499592 -175789070 + L2 LINE L2 2645 2841 -473 209 345 82 73 chr4 8499652 8499980 -175788682 + L2 LINE L2 2939 3269 -3 197 382 20 20 chr4 8500214 8500316 -175788346 - L3 LINE CR1 -237 1340 1239 251 184 0 0 chr4 8501115 8501164 -175787498 + MIR SINE MIR 31 79 -129 212 333 14 0 chr4 8501184 8501256 -175787406 - L2 LINE L2 0 3272 3200 236 303 45 0 chr4 8501369 8501435 -175787227 + MER91A DNA MER1_type 128 196 0 198 328 160 8 chr4 8501488 8501619 -175787043 + L2 LINE L2 2496 2646 -668 557 330 15 15 chr4 8501626 8501823 -175786839 + MIR SINE MIR 35 231 -31 661 284 155 9 chr4 8501856 8502398 -175786264 + L2 LINE L2 2642 3294 -19 463 228 41 81 chr4 8502689 8502787 -175785875 - MER63A DNA MER1_type -1499 189 101 2375 80 0 3 chr4 8502787 8503099 -175785563 - AluY SINE Alu 0 311 1 463 228 41 81 chr4 8503099 8503197 -175785465 - MER63A DNA MER1_type -1587 101 1 830 257 4 69 chr4 8503354 8503599 -175785063 - MIR SINE MIR -32 230 2 266 327 30 0 chr4 8503677 8503778 -175784884 - MIR SINE MIR -72 190 87 401 380 81 9 chr4 8504803 8505024 -175783638 - MIR SINE MIR -5 257 21 1699 195 18 34 chr4 8505262 8505642 -175783020 + MLT1B LTR MaLR 1 374 -16 385 342 21 0 chr4 8506120 8506282 -175782380 + MIR SINE MIR 8 131 -77 23 54 0 0 chr4 8506778 8506815 -175781847 + AT_rich Low_complexity Low_complexity 1 37 0 235 138 0 0 chr4 8506815 8506873 -175781789 - Charlie5 DNA MER1_type -84 2528 2471 6502 53 4 5 chr4 8506897 8508458 -175780204 - L1PA6 LINE L1 -6 6148 4592 515 248 20 39 chr4 8508881 8509034 -175779628 + MER58B DNA MER1_type 192 341 0 261 307 100 7 chr4 8509194 8509334 -175779328 - MIR3 SINE MIR -49 159 7 254 284 86 9 chr4 8509397 8509513 -175779149 - MIR3 SINE MIR -77 131 7 300 336 41 0 chr4 8509552 8509674 -175778988 - MIR3 SINE MIR -49 159 33 695 313 48 4 chr4 8509705 8509932 -175778730 - MIR SINE MIR -12 250 14 288 298 132 3 chr4 8509931 8510105 -175778557 + MIR SINE MIR 18 208 -54 * 2225 107 3 10 chr4 8510377 8510687 -175777975 - AluSx SINE Alu -4 308 1 1280 27 0 0 chr4 8510864 8511013 -175777649 - L1PA2 LINE L1 0 6155 6007 492 31 0 0 chr4 8511013 8511078 -175777584 + L1PA2 LINE L1 5929 5993 -162 421 332 155 18 chr4 8511181 8511458 -175777204 - L2 LINE L2 0 3313 2999 205 313 12 24 chr4 8511596 8511679 -175776983 + MIR SINE MIR 30 111 -97 213 349 46 34 chr4 8511839 8512014 -175776648 - L2 LINE L2 -2 3270 3094 359 356 101 26 chr4 8512850 8513157 -175775505 - HAL1 LINE L1 -1231 1276 875 337 288 11 43 chr4 8513321 8513593 -175775069 + GA-rich Low_complexity Low_complexity 1 263 0 309 148 0 19 chr4 8513824 8513878 -175774784 - Alu SINE Alu -249 53 1 2417 87 0 0 chr4 8513967 8514276 -175774386 + AluSq SINE Alu 1 309 -4 1366 204 24 21 chr4 8514389 8514722 -175773940 - MLT1A1 LTR MaLR -31 334 1 357 268 42 65 chr4 8514731 8514833 -175773829 + L1ME4a LINE L1 5550 5648 -522 931 219 63 0 chr4 8514833 8515038 -175773624 + MER20 DNA MER1_type 2 219 0 357 268 42 65 chr4 8515038 8515103 -175773559 + L1ME4a LINE L1 5648 5713 -457 372 22 0 0 chr4 8515580 8515625 -175773037 + (TG)n Simple_repeat Simple_repeat 2 46 0 342 315 0 22 chr4 8516221 8516313 -175772349 + L1MC4 LINE L1 6614 6703 -1339 297 264 8 21 chr4 8516323 8516432 -175772230 + L1M3 LINE L1 5360 5468 -700 2273 76 0 48 chr4 8516529 8516844 -175771818 - AluSq SINE Alu -13 300 1 972 138 46 0 chr4 8516852 8517026 -175771636 + L1MA5A LINE L1 6112 6293 -4 1899 128 29 0 chr4 8517053 8517361 -175771301 + AluSx SINE Alu 1 316 0 180 77 0 0 chr4 8517669 8517695 -175770967 + (TATG)n Simple_repeat Simple_repeat 3 28 0 313 313 85 11 chr4 8517847 8518023 -175770639 + L1ME4a LINE L1 5930 6118 -3 1857 123 0 42 chr4 8518176 8518494 -175770168 - AluSx SINE Alu 0 316 11 823 192 315 45 chr4 8518647 8519022 -175769640 - L1MD2 LINE L1 -22 6337 5862 300 361 142 6 chr4 8519211 8519394 -175769268 - MIR SINE MIR -17 245 38 375 306 27 20 chr4 8519410 8519557 -175769105 - MIR3 SINE MIR -58 150 3 541 280 131 14 chr4 8519607 8519728 -175768934 + MIR SINE MIR 4 109 -153 2169 115 7 0 chr4 8519728 8520032 -175768630 - AluSx SINE Alu -6 306 1 541 280 131 14 chr4 8520032 8520142 -175768520 + MIR SINE MIR 109 262 0 311 239 99 0 chr4 8520164 8520235 -175768427 + MIR SINE MIR 31 108 -154 1853 153 40 0 chr4 8520264 8520564 -175768098 + AluJb SINE Alu 1 312 0 469 326 163 24 chr4 8521030 8521159 -175767503 + L2 LINE L2 2920 3030 -242 1428 188 9 59 chr4 8521159 8521479 -175767183 - AluJo SINE Alu -8 304 1 469 326 163 24 chr4 8521479 8521637 -175767025 + L2 LINE L2 3030 3247 -25 959 220 112 38 chr4 8521990 8522398 -175766264 + MLT1C LTR MaLR 25 463 -4 469 290 97 5 chr4 8522405 8522591 -175766071 - MIR SINE MIR -57 205 3 268 207 52 0 chr4 8522690 8522748 -175765914 - L3 LINE CR1 -182 1395 1335 362 269 19 0 chr4 8522997 8523105 -175765557 + MER69 DNA AcHobo 64 173 -2353 * 1803 163 67 0 chr4 8523101 8523457 -175765205 - MLT1B LTR MaLR -10 380 1 569 263 229 7 chr4 8523458 8523755 -175764907 + MER69 DNA AcHobo 166 528 -1998 221 265 60 99 chr4 8523841 8523992 -175764670 + MER5A DNA MER1_type 38 182 -7 1117 210 170 51 chr4 8525333 8525781 -175762881 - MLT1D LTR MaLR -4 501 1 213 302 0 0 chr4 8526195 8526248 -175762414 - MIR SINE MIR -61 147 95 1932 113 3 31 chr4 8527169 8527496 -175761166 - AluSx SINE Alu 0 319 1 295 313 52 0 chr4 8527700 8527796 -175760866 - MLT1I LTR MaLR -199 210 110 1168 147 66 0 chr4 8528622 8528819 -175759843 - AluSc SINE Alu -21 288 79 913 50 8 25 chr4 8528818 8528937 -175759725 - AluY SINE Alu -171 140 24 * 703 283 82 9 chr4 8529042 8529261 -175759401 - MIR SINE MIR 0 262 28 254 301 58 39 chr4 8529483 8529586 -175759076 + MIR SINE MIR 20 124 -138 353 246 112 39 chr4 8529627 8529806 -175758856 - MLT1K LTR MaLR -51 537 346 230 325 25 0 chr4 8530957 8531037 -175757625 + L2 LINE L2 3017 3098 -174 375 256 214 12 chr4 8531246 8531414 -175757248 - MIR SINE MIR -1 261 60 334 180 169 45 chr4 8531568 8531657 -175757005 + L2 LINE L2 3168 3267 -5 268 292 80 9 chr4 8532071 8532184 -175756478 - L2 LINE L2 -249 3064 2944 201 366 24 0 chr4 8532534 8532616 -175756046 - L2 LINE L2 -948 2366 2283 984 244 102 48 chr4 8532731 8533191 -175755471 - MLT1D LTR MaLR -20 485 1 407 368 35 26 chr4 8533529 8533757 -175754905 + L1ME4a LINE L1 5666 5895 -226 348 216 201 37 chr4 8533774 8533908 -175754754 + L1ME4a LINE L1 5962 6117 -4 259 337 83 0 chr4 8534551 8534756 -175753906 - L1M4 LINE L1 -2380 3766 3545 1441 142 150 11 chr4 8534797 8535057 -175753605 - AluSg SINE Alu -14 296 1 248 288 68 8 chr4 8535597 8535715 -175752947 - MIR SINE MIR -98 164 40 239 233 163 54 chr4 8536011 8536140 -175752522 - MIR SINE MIR 0 262 120 597 258 0 26 chr4 8536143 8536298 -175752364 - Tigger2 DNA MER2_type -10 2708 2558 471 216 234 0 chr4 8536302 8536372 -175752290 - Tigger2 DNA MER2_type -2509 209 157 459 92 0 0 chr4 8536372 8536437 -175752225 + (TG)n Simple_repeat Simple_repeat 2 66 0 471 216 234 0 chr4 8536437 8536533 -175752129 - Tigger2 DNA MER2_type -2561 157 4 1487 221 126 9 chr4 8536552 8536996 -175751666 - MLT1D LTR MaLR -9 496 1 344 224 82 31 chr4 8536997 8537095 -175751567 - MIR SINE MIR -140 122 20 2144 112 10 0 chr4 8537160 8537455 -175751207 - AluSx SINE Alu -10 302 5 665 269 123 19 chr4 8537600 8538013 -175750649 - L2 LINE L2 -412 2902 2447 260 203 16 16 chr4 8539595 8539659 -175749003 - MIR SINE MIR -63 145 82 187 270 52 52 chr4 8539873 8539988 -175748674 - L2 LINE L2 -1237 2077 1963 228 111 0 0 chr4 8540465 8540501 -175748161 + (TG)n Simple_repeat Simple_repeat 2 37 0 444 82 0 0 chr4 8541357 8541418 -175747244 + (TA)n Simple_repeat Simple_repeat 2 62 0 314 259 80 56 chr4 8541817 8541979 -175746683 - MIR SINE MIR -86 176 11 288 233 0 48 chr4 8542017 8542120 -175746542 - MER58B DNA MER1_type 0 341 244 532 237 10 23 chr4 8542703 8543002 -175745660 + GA-rich Low_complexity Low_complexity 1 295 0 300 209 30 30 chr4 8543018 8543152 -175745510 + GA-rich Low_complexity Low_complexity 2 135 0 382 204 33 39 chr4 8543190 8543371 -175745291 + GA-rich Low_complexity Low_complexity 1 180 0 245 233 0 17 chr4 8543384 8543444 -175745218 + GA-rich Low_complexity Low_complexity 4 62 0 216 167 0 0 chr4 8544311 8544347 -175744315 + C-rich Low_complexity Low_complexity 2 37 0 476 320 178 8 chr4 8544474 8544960 -175743702 + L2 LINE L2 2708 3286 -27 240 86 0 0 chr4 8544972 8545007 -175743655 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 203 244 110 0 chr4 8545861 8545943 -175742719 - MIR SINE MIR -95 113 39 262 313 43 26 chr4 8546049 8546164 -175742498 + MIR SINE MIR 49 165 -97 339 242 11 11 chr4 8547161 8547252 -175741410 - L2 LINE L2 -213 3059 2969 182 283 0 0 chr4 8548134 8548180 -175740482 - MIR SINE MIR -1 261 216 418 306 76 48 chr4 8548233 8548547 -175740115 - MLT1L LTR MaLR -77 538 216 328 307 143 32 chr4 8548646 8548835 -175739827 - MIR SINE MIR -31 231 22 204 311 44 78 chr4 8549234 8549341 -175739321 + L2 LINE L2 3036 3136 -177 1574 184 116 32 chr4 8549341 8549721 -175738941 - MLT2D LTR ERVL -2 412 1 204 311 44 78 chr4 8549721 8549793 -175738869 + L2 LINE L2 3136 3209 -104 539 229 67 14 chr4 8550144 8550317 -175738345 - MIR SINE MIR -64 144 9 321 293 0 9 chr4 8553917 8554023 -175734639 - MLT1K LTR MaLR -322 266 162 734 100 0 0 chr4 8554066 8554166 -175734496 - AluSq SINE Alu -61 252 153 233 246 33 0 chr4 8554925 8554986 -175733676 - MIR SINE MIR -191 71 9 2248 91 3 0 chr4 8555615 8555926 -175732736 - AluSq SINE Alu 0 312 1 1315 148 71 97 chr4 8556110 8556420 -175732242 - AluJo SINE Alu -8 304 3 247 290 0 14 chr4 8557475 8557544 -175731118 - L2 LINE L2 -2 3270 3203 232 280 80 0 chr4 8557674 8557749 -175730913 - L2 LINE L2 0 3272 3192 195 69 0 0 chr4 8558399 8558428 -175730234 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 228 35 0 0 chr4 8559298 8559327 -175729335 + (TGG)n Simple_repeat Simple_repeat 1 29 0 360 364 74 12 chr4 8559560 8559802 -175728860 + MIR SINE MIR 2 258 -4 267 254 30 0 chr4 8559878 8559945 -175728717 - MIR SINE MIR -125 137 69 371 268 16 57 chr4 8560490 8560613 -175728049 - MIR SINE MIR -95 167 50 1394 228 23 49 chr4 8560721 8561151 -175727511 + MLT1D LTR MaLR 85 503 -2 631 329 18 18 chr4 8561852 8562074 -175726588 - MIR SINE MIR -36 226 5 183 328 66 0 chr4 8562276 8562337 -175726325 + L2 LINE L2 3166 3230 -42 440 307 33 0 chr4 8562465 8562677 -175725985 + HAL1 LINE L1 111 329 -2178 902 271 135 67 chr4 8562843 8562937 -175725725 + HAL1 LINE L1 643 729 -1778 1988 133 7 7 chr4 8562937 8563239 -175725423 + AluSx SINE Alu 1 302 -10 902 271 135 67 chr4 8563239 8563704 -175724958 + HAL1 LINE L1 729 1161 -1346 2173 81 3 3 chr4 8563704 8564026 -175724636 + AluSx SINE Alu 1 322 0 902 271 135 67 chr4 8564026 8564414 -175724248 + HAL1 LINE L1 1161 1656 -851 264 214 0 51 chr4 8564414 8564523 -175724139 - MLT1H LTR MaLR 0 549 447 2674 197 23 49 chr4 8564660 8564987 -175723675 - MER41C LTR ERV1 0 554 247 2104 100 3 29 chr4 8564987 8565298 -175723364 - AluSx SINE Alu -9 303 1 2674 197 23 49 chr4 8565298 8565539 -175723123 - MER41C LTR ERV1 -307 247 1 288 216 95 0 chr4 8565737 8565811 -175722851 + HAL1 LINE L1 1682 1762 -745 378 348 84 31 chr4 8565901 8566023 -175722639 + MLT1J LTR MaLR 157 271 -240 3237 158 18 125 chr4 8566023 8566222 -175722440 - LTR8 LTR ERV1 0 691 472 2123 115 0 0 chr4 8566222 8566508 -175722154 - AluSx SINE Alu -26 286 1 3237 158 18 125 chr4 8566508 8567082 -175721580 - LTR8 LTR ERV1 -219 472 1 378 348 84 31 chr4 8567082 8567281 -175721381 + MLT1J LTR MaLR 271 495 -16 1253 286 77 31 chr4 8567300 8567618 -175721044 + HAL1 LINE L1 1750 2052 -455 1940 104 93 0 chr4 8567618 8567898 -175720764 + AluSx SINE Alu 1 306 -6 1253 286 77 31 chr4 8567898 8568232 -175720430 + HAL1 LINE L1 2052 2432 -75 4453 64 7 0 chr4 8568281 8568831 -175719831 - MER41A LTR ERV1 0 554 1 240 209 0 0 chr4 8569095 8569181 -175719481 + (TGAA)n Simple_repeat Simple_repeat 2 87 0 291 312 29 2 chr4 8569224 8569335 -175719327 - MIR SINE MIR -62 146 69 567 278 96 5 chr4 8569343 8569530 -175719132 - MIR SINE MIR -12 250 47 2015 208 21 68 chr4 8569699 8570272 -175718390 - MLT2B3 LTR ERVL -8 546 1 1936 139 76 80 chr4 8570482 8571086 -175717576 + pTR5 LTR ERV1 743 1344 -1094 3209 159 270 1 chr4 8571102 8571750 -175716912 + LTR12 LTR ERV1 5 826 0 512 271 80 24 chr4 8572377 8572794 -175715868 - MLT1F1 LTR MaLR -30 537 10 206 337 58 0 chr4 8572808 8572894 -175715768 + MIR SINE MIR 94 184 -78 1203 205 91 18 chr4 8573800 8574141 -175714521 - MLT1D LTR MaLR -139 366 1 329 333 119 6 chr4 8574278 8574446 -175714216 + L2 LINE L2 3127 3313 0 424 136 45 0 chr4 8575174 8575260 -175713402 + AluJb SINE Alu 213 301 0 306 305 80 53 chr4 8575272 8575423 -175713239 - MIR3 SINE MIR -31 177 23 214 274 57 57 chr4 8575544 8575668 -175712994 + MIR SINE MIR 59 182 -80 313 217 24 6 chr4 8580093 8580259 -175708403 + (CA)n Simple_repeat Simple_repeat 2 170 0 249 222 35 0 chr4 8580288 8580459 -175708203 + (CA)n Simple_repeat Simple_repeat 2 178 0 237 263 17 0 chr4 8580485 8580660 -175708002 + (CA)n Simple_repeat Simple_repeat 2 179 0 1526 179 10 23 chr4 8582948 8583250 -175705412 + AluJb SINE Alu 1 298 -14 190 330 142 34 chr4 8585976 8586209 -175702453 - L2 LINE L2 -784 2530 2273 494 300 184 10 chr4 8586387 8586697 -175701965 - L2 LINE L2 -1220 2094 1731 341 295 9 9 chr4 8587252 8587357 -175701305 - MIR3 SINE MIR -46 162 58 224 274 8 48 chr4 8587664 8587788 -175700874 + L2 LINE L2 2925 3043 -229 290 286 31 0 chr4 8589150 8589248 -175699414 - MIR SINE MIR -60 148 48 301 200 62 0 chr4 8589484 8589549 -175699113 + L1ME4a LINE L1 6048 6116 -5 2043 154 0 0 chr4 8589837 8590148 -175698514 + AluSx SINE Alu 1 311 -1 328 282 105 0 chr4 8590148 8590272 -175698390 + L1ME4a LINE L1 5985 6121 0 747 207 59 12 chr4 8591502 8591671 -175696991 + MER58A DNA MER1_type 35 211 -13 254 239 0 0 chr4 8591682 8591728 -175696934 - MIR3 SINE MIR -51 157 112 2198 116 0 0 chr4 8591840 8592141 -175696521 - AluSx SINE Alu -11 301 1 1825 184 36 33 chr4 8593520 8593884 -175694778 - MLT1A1 LTR MaLR 0 365 1 2145 124 3 10 chr4 8595673 8595987 -175692675 - AluSq SINE Alu -1 312 1 239 233 70 35 chr4 8596207 8596293 -175692369 + MLT1K LTR MaLR 16 104 -484 912 267 137 37 chr4 8596296 8596727 -175691935 + MLT1K LTR MaLR 3 476 0 448 328 73 25 chr4 8600583 8600787 -175687875 + MIR SINE MIR 36 249 -13 223 242 71 50 chr4 8601432 8601531 -175687131 + MIR SINE MIR 31 131 -77 841 212 29 24 chr4 8603022 8603395 -175685267 + MLT1C LTR MaLR 51 466 -1 255 196 0 54 chr4 8603424 8603480 -175685182 + G-rich Low_complexity Low_complexity 2 54 0 326 271 28 19 chr4 8604019 8604126 -175684536 + MIR SINE MIR 39 146 -116 219 288 17 0 chr4 8605003 8605062 -175683600 - MIR SINE MIR -79 183 124 303 265 51 43 chr4 8605072 8605189 -175683473 - MIR SINE MIR -54 154 37 377 191 95 0 chr4 8605599 8605683 -175682979 + MIR SINE MIR 102 193 -69 2460 70 0 3 chr4 8605729 8606041 -175682621 + AluY SINE Alu 1 311 0 249 310 69 21 chr4 8607311 8607456 -175681206 + L1ME4a LINE L1 5968 6119 -2 306 309 57 0 chr4 8609142 8609265 -175679397 + MIR SINE MIR 60 189 -73 27 110 0 0 chr4 8609720 8609838 -175678824 + GC_rich Low_complexity Low_complexity 1 118 0 33 0 0 0 chr4 8610460 8610493 -175678169 + GC_rich Low_complexity Low_complexity 1 33 0 221 321 107 14 chr4 8611267 8611407 -175677255 - MIR SINE MIR -23 239 87 324 231 231 11 chr4 8611427 8611518 -175677144 - L1ME4a LINE L1 -21 6100 5990 328 394 45 10 chr4 8611754 8611952 -175676710 + HAL1 LINE L1 1046 1250 -1257 233 271 71 0 chr4 8612000 8612070 -175676592 + HAL1 LINE L1 1405 1479 -1028 213 121 0 0 chr4 8613385 8613418 -175675244 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 2126 118 0 6 chr4 8613629 8613942 -175674720 + AluSx SINE Alu 1 311 -1 181 347 13 0 chr4 8613957 8614032 -175674630 - L2 LINE L2 -13 3259 3184 746 207 179 50 chr4 8614098 8614466 -175674196 + MLT1D LTR MaLR 22 430 -37 1760 92 117 18 chr4 8614512 8614794 -175673868 + AluSp SINE Alu 1 310 -3 1767 196 0 3 chr4 8614805 8615183 -175673479 + AluJo SINE Alu 1 377 0 279 356 0 10 chr4 8615229 8615333 -175673329 + MER5A DNA MER1_type 84 186 -3 331 220 150 116 chr4 8615348 8615521 -175673141 + MER5A DNA MER1_type 3 181 -8 807 169 0 0 chr4 8615524 8615648 -175673014 + FLAM_A SINE Alu 8 131 -11 1423 162 113 19 chr4 8617164 8617430 -175671232 - AluJb SINE Alu -21 291 1 2497 216 58 21 chr4 8617442 8618024 -175670638 - L1MC1 LINE L1 -1 6332 5729 320 309 63 16 chr4 8618248 8618374 -175670288 - MIR SINE MIR -46 216 85 1694 158 3 58 chr4 8618585 8618915 -175669747 - AluJb SINE Alu 0 312 1 2277 105 0 0 chr4 8618975 8619280 -175669382 + AluSc SINE Alu 1 305 -4 204 255 0 0 chr4 8620152 8620199 -175668463 - MIR SINE MIR -93 169 123 1378 141 33 40 chr4 8620264 8620568 -175668094 - AluY SINE Alu -7 304 3 204 255 0 0 chr4 8621058 8621105 -175667557 - MIR SINE MIR -93 169 123 2353 51 34 0 chr4 8621170 8621464 -175667198 - AluY SINE Alu -7 304 1 2065 101 34 0 chr4 8621464 8621760 -175666902 - AluSx SINE Alu -6 306 1 231 229 0 0 chr4 8621824 8621872 -175666790 - MIR SINE MIR -137 125 78 1014 75 0 61 chr4 8622228 8622375 -175666287 + AluSq/x SINE Alu 1 138 -175 1855 147 20 0 chr4 8622377 8622676 -175665986 + AluSx SINE Alu 6 310 -2 255 31 0 0 chr4 8623065 8623097 -175665565 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 629 261 138 4 chr4 8623104 8623364 -175665298 + L2 LINE L2 2670 2964 -350 594 231 104 73 chr4 8623597 8623854 -175664808 - MLT1C LTR MaLR -16 451 181 2034 117 27 0 chr4 8623854 8624152 -175664510 - AluSx SINE Alu -3 309 4 594 231 104 73 chr4 8624152 8624210 -175664452 - MLT1C LTR MaLR -286 181 126 310 191 32 0 chr4 8624208 8624271 -175664391 + MER50 LTR ERV1 10 74 -660 * 350 199 155 10 chr4 8624289 8624392 -175664270 - MLT1C LTR MaLR -263 127 9 225 298 115 10 chr4 8624667 8624771 -175663891 + L3 LINE CR1 1460 1574 -3 1627 127 3 67 chr4 8624787 8624901 -175663761 + AluJo SINE Alu 1 121 -191 2187 131 49 25 chr4 8624901 8625267 -175663395 - THE1C LTR MaLR 0 375 1 1627 127 3 67 chr4 8625267 8625436 -175663226 + AluJo SINE Alu 121 266 -46 642 314 101 18 chr4 8625457 8625785 -175662877 + MLT1J2 LTR MaLR 96 450 0 528 323 32 32 chr4 8625785 8626002 -175662660 + MIR SINE MIR 40 256 -6 185 317 0 0 chr4 8626264 8626324 -175662338 - MER5A DNA MER1_type -2 187 128 335 291 185 7 chr4 8626355 8626506 -175662156 + MER5A DNA MER1_type 4 181 -8 258 229 105 67 chr4 8626836 8626941 -175661721 - MIR SINE MIR -70 138 30 222 232 49 61 chr4 8626986 8627068 -175661594 - MER5B DNA MER1_type -30 148 68 187 370 99 6 chr4 8627263 8627425 -175661237 - L2 LINE L2 -168 3104 2928 780 248 169 12 chr4 8627443 8628010 -175660652 + L2 LINE L2 2624 3295 -18 2038 104 21 3 chr4 8628200 8628489 -175660173 - AluSg SINE Alu -16 294 1 336 275 9 46 chr4 8628885 8628994 -175659668 + MIR SINE MIR 47 151 -57 273 302 35 35 chr4 8629284 8629400 -175659262 - MIR3 SINE MIR -21 187 72 1754 165 3 34 chr4 8629548 8629870 -175658792 + AluJb SINE Alu 1 312 0 419 213 11 0 chr4 8630226 8630320 -175658342 - MER5A DNA MER1_type -83 106 12 197 284 91 45 chr4 8630425 8630513 -175658149 - MIR SINE MIR -95 113 22 5016 184 36 9 chr4 8630621 8631708 -175656954 - MER45R DNA AcHobo -8 1573 458 479 312 74 0 chr4 8631881 8632083 -175656579 - MER112 DNA MER1_type -12 248 32 286 282 87 28 chr4 8632694 8632837 -175655825 - MIR SINE MIR -52 210 58 260 336 29 10 chr4 8633147 8633251 -175655411 + MIR3 SINE MIR 68 173 -35 542 121 103 52 chr4 8633258 8633288 -175655374 + MER53 DNA DNA 1 28 -161 3471 73 14 2 chr4 8633288 8633727 -175654935 + MLT2A1 LTR ERVL 1 444 0 542 121 103 52 chr4 8633727 8633812 -175654850 + MER53 DNA DNA 28 122 -67 * 3365 159 11 15 chr4 8633795 8634441 -175654221 - MER50 LTR ERV1 -10 724 3 279 175 113 25 chr4 8634442 8634522 -175654140 - MER53 DNA DNA -102 87 1 276 309 167 0 chr4 8635634 8635802 -175652860 + LTR16C LTR ERVL 205 400 -91 2931 148 60 4 chr4 8635845 8636345 -175652317 + LTR10A LTR ERV1 1 528 -81 346 247 12 0 chr4 8636370 8636451 -175652211 + LTR16C LTR ERVL 410 491 0 315 221 0 0 chr4 8636844 8636930 -175651732 + (CA)n Simple_repeat Simple_repeat 1 86 0 299 321 71 9 chr4 8637370 8637482 -175651180 + L2 LINE L2 3153 3271 -1 2354 56 7 13 chr4 8638798 8639100 -175649562 + AluY SINE Alu 1 300 -11 201 295 64 13 chr4 8639499 8639577 -175649085 + L2 LINE L2 3190 3271 -1 512 194 8 0 chr4 8639973 8640107 -175648555 + (TAAA)n Simple_repeat Simple_repeat 4 138 0 1468 148 121 8 chr4 8640228 8640484 -175648178 + AluSg SINE Alu 1 285 -25 201 254 15 30 chr4 8640555 8640622 -175648040 - MIR SINE MIR -62 146 81 314 349 108 5 chr4 8641220 8641415 -175647247 - MIR SINE MIR -34 228 14 663 118 0 2 chr4 8641599 8641853 -175646809 + AluSx SINE Alu 1 305 0 242 293 13 0 chr4 8641891 8641966 -175646696 + L1MB7 LINE L1 5788 5863 -258 192 163 0 0 chr4 8642013 8642056 -175646606 + CT-rich Low_complexity Low_complexity 2 44 0 255 250 18 36 chr4 8642058 8642170 -175646492 + (TAGA)n Simple_repeat Simple_repeat 4 113 0 2090 128 0 0 chr4 8642297 8642601 -175646061 - AluSx SINE Alu -8 304 1 2118 98 0 7 chr4 8642641 8642948 -175645714 - AluSx SINE Alu 0 305 1 276 336 32 0 chr4 8642975 8643100 -175645562 - L1ME4a LINE L1 0 6121 5993 791 280 24 0 chr4 8643150 8643357 -175645305 + MIR SINE MIR 13 224 -38 2244 210 48 95 chr4 8643967 8644009 -175644653 - L1MB8 LINE L1 0 6178 6136 1543 180 25 3 chr4 8644009 8644327 -175644335 + AluJb SINE Alu 1 312 0 2244 210 48 95 chr4 8644327 8645018 -175643644 - L1MB8 LINE L1 -42 6136 5480 469 243 96 0 chr4 8645211 8645388 -175643274 - MIR SINE MIR -19 243 50 639 265 43 28 chr4 8645495 8645706 -175642956 + L1MB7 LINE L1 5953 6166 -18 198 234 21 0 chr4 8645739 8645786 -175642876 - MIR3 SINE MIR -47 161 114 247 166 33 44 chr4 8646461 8646642 -175642020 + (TG)n Simple_repeat Simple_repeat 2 180 0 261 214 60 86 chr4 8646694 8646811 -175641851 - L2 LINE L2 -143 3129 3016 304 336 25 0 chr4 8646838 8646960 -175641702 - MIR SINE MIR -78 184 60 180 333 26 0 chr4 8647211 8647289 -175641373 + L2 LINE L2 3225 3304 -9 461 310 127 32 chr4 8647300 8647584 -175641078 - L2 LINE L2 0 3313 3003 1017 231 5 0 chr4 8649205 8649408 -175639254 + MER58A DNA MER1_type 21 224 0 680 300 23 9 chr4 8649485 8649705 -175638957 - MIR SINE MIR -19 243 21 305 259 52 26 chr4 8650254 8650370 -175638292 - LTR16C LTR ERVL -20 471 353 410 231 196 7 chr4 8650616 8650759 -175637903 + MER5A DNA MER1_type 14 183 -6 412 303 140 0 chr4 8651271 8651449 -175637213 - L3 LINE CR1 -42 1535 1333 197 274 24 48 chr4 8651449 8651533 -175637129 - L3 LINE CR1 -504 1073 992 320 339 25 8 chr4 8652403 8652524 -175636138 + L2 LINE L2 3181 3303 -10 228 288 0 0 chr4 8653270 8653329 -175635333 + MIR SINE MIR 92 150 -112 188 274 68 14 chr4 8654227 8654300 -175634362 - MIR SINE MIR -73 135 59 615 312 25 0 chr4 8654446 8654648 -175634014 + MIR SINE MIR 44 250 -12 329 324 56 7 chr4 8654752 8654894 -175633768 - L2 LINE L2 -9 3263 3115 186 161 0 0 chr4 8655314 8655345 -175633317 + L2 LINE L2 3264 3294 -19 664 121 0 0 chr4 8656187 8656278 -175632384 - AluJb SINE Alu -23 289 199 482 74 0 158 chr4 8656379 8656474 -175632188 + MADE1 DNA Mariner 1 80 0 1267 215 60 41 chr4 8657162 8657529 -175631133 + MLT1A2 LTR MaLR 1 374 0 1254 146 10 5 chr4 8657545 8657767 -175630895 - AluJb SINE Alu 0 308 86 642 268 105 8 chr4 8657891 8658130 -175630532 + MIR SINE MIR 1 262 0 823 200 87 20 chr4 8658258 8658453 -175630209 + MLT1J LTR MaLR 190 397 -114 542 268 153 10 chr4 8659499 8659708 -175628954 + MIR SINE MIR 24 262 0 364 255 10 31 chr4 8659845 8659943 -175628719 + MIR SINE MIR 97 192 -70 1364 200 31 7 chr4 8660020 8660310 -175628352 + AluJo SINE Alu 1 297 -15 216 330 29 19 chr4 8660379 8660482 -175628180 - MIR3 SINE MIR -14 194 91 337 277 57 29 chr4 8660604 8660978 -175627684 + L1P LINE L1 4672 5054 -1092 1473 269 51 76 chr4 8661251 8661798 -175626864 + L1MC4a LINE L1 493 1012 -5193 674 222 0 0 chr4 8661798 8661950 -175626712 + FLAM_A SINE Alu 1 152 0 1473 269 51 76 chr4 8661950 8662270 -175626392 + L1MC4a LINE L1 1012 1339 -4866 591 248 19 6 chr4 8662380 8662541 -175626121 + MER104 DNA Tc2 1 163 -17 253 203 25 25 chr4 8662570 8662649 -175626013 + HAL1 LINE L1 1494 1572 -935 1032 324 48 30 chr4 8662686 8663417 -175625245 + L1MEc LINE L1 107 850 -5546 387 210 20 108 chr4 8663411 8663606 -175625056 + L1MEc LINE L1 2838 3015 -3200 * 856 178 89 0 chr4 8663663 8663854 -175624808 - L1MB3 LINE L1 -143 6040 5833 435 282 77 71 chr4 8664011 8664562 -175624100 + L1MC4a LINE L1 2093 2614 -3601 3476 163 26 53 chr4 8664562 8665296 -175623366 - L1MB3 LINE L1 0 6183 5468 1772 208 43 3 chr4 8665296 8665643 -175623019 - MLT1A1 LTR MaLR -4 361 1 3476 163 26 53 chr4 8665643 8665665 -175622997 - L1MB3 LINE L1 -715 5468 5447 435 282 77 71 chr4 8665665 8665787 -175622875 + L1MC4a LINE L1 2614 2734 -3481 1247 279 91 36 chr4 8665810 8666539 -175622123 + L1MC4a LINE L1 4436 5204 -1011 1292 158 0 23 chr4 8666559 8666780 -175621882 - AluJo SINE Alu -25 287 72 588 192 13 40 chr4 8667823 8667974 -175620688 + MER68 LTR ERV1 72 218 -344 683 284 34 59 chr4 8719433 8719672 -175568990 - MIR SINE MIR -14 248 16 35 41 0 0 chr4 8719733 8719782 -175568880 + AT_rich Low_complexity Low_complexity 1 49 0 1684 94 51 0 chr4 8719827 8720062 -175568600 + AluSq SINE Alu 1 247 -66 192 282 117 29 chr4 8721347 8721450 -175567212 + MIR SINE MIR 20 131 -131 984 185 0 14 chr4 8721542 8721753 -175566909 + MER96B DNA MER1_type? 4 211 -206 821 160 96 0 chr4 8721880 8722036 -175566626 - AluJb SINE Alu -21 291 121 285 273 37 59 chr4 8722372 8722529 -175566133 + L1MC4a LINE L1 5772 5926 -1951 2120 114 0 7 chr4 8722529 8722827 -175565835 + AluSq SINE Alu 1 296 -17 285 273 37 59 chr4 8722827 8722856 -175565806 + L1MC4a LINE L1 5926 5954 -1923 476 113 0 0 chr4 8723713 8723784 -175564878 + MLT1B LTR MaLR 119 189 -201 773 153 0 8 chr4 8723817 8723941 -175564721 + FRAM SINE Alu 49 171 -5 805 194 70 0 chr4 8723945 8724131 -175564531 + MLT1B LTR MaLR 192 390 0 270 221 63 32 chr4 8724349 8724444 -175564218 - L2 LINE L2 -258 3014 2917 1911 133 3 14 chr4 8725062 8725355 -175563307 + AluJo SINE Alu 1 290 -22 2022 123 0 13 chr4 8725355 8725655 -175563007 - AluSx SINE Alu -16 296 1 376 328 66 25 chr4 8725660 8725904 -175562758 - HERV16 LTR ERVL -3456 1540 1287 213 213 0 0 chr4 8726627 8726674 -175561988 + CT-rich Low_complexity Low_complexity 3 49 0 884 188 152 25 chr4 8726854 8727130 -175561532 + MLT1C LTR MaLR 17 327 -140 187 256 23 0 chr4 8727202 8727245 -175561417 - MIR SINE MIR -102 160 117 499 183 0 11 chr4 8727621 8727714 -175560948 - MLT1I LTR MaLR -317 92 1 1823 161 0 3 chr4 8727767 8728058 -175560604 + AluSx SINE Alu 22 311 -1 233 307 40 10 chr4 8728217 8728318 -175560344 + L1MC/D LINE L1 5475 5578 -766 318 324 119 26 chr4 8728351 8728703 -175559959 - LTR16A LTR ERVL -53 397 13 235 341 47 0 chr4 8728805 8728890 -175559772 + L2 LINE L2 3180 3268 -4 463 259 40 26 chr4 8728925 8729176 -175559486 + L2 LINE L2 2580 2944 -328 339 200 0 29 chr4 8729190 8729260 -175559402 - L2 LINE L2 -241 3072 3005 231 232 0 0 chr4 8729377 8729433 -175559229 + (TGGA)n Simple_repeat Simple_repeat 2 57 0 264 260 55 0 chr4 8729897 8729970 -175558692 + MIR3 SINE MIR 115 191 -17 353 240 156 7 chr4 8730850 8731004 -175557658 - MIR3 SINE MIR -15 193 17 4422 188 21 40 chr4 8733129 8734346 -175554316 - L1M2 LINE L1 -744 5402 4315 1049 184 16 5 chr4 8734880 8735070 -175553592 + AluJb SINE Alu 43 234 -78 1535 148 0 49 chr4 8735139 8735423 -175553239 + AluJo SINE Alu 31 300 -12 2308 96 0 0 chr4 8735433 8735734 -175552928 + AluSq SINE Alu 1 301 -12 1045 186 29 0 chr4 8735743 8735947 -175552715 + MLT1A1 LTR MaLR 156 365 0 240 206 82 27 chr4 8735947 8736011 -175552651 + MLT1C LTR MaLR 496 563 -4 1409 216 26 31 chr4 8736032 8736265 -175552397 - L1ME LINE L1 -384 5778 5546 1059 228 60 85 chr4 8736265 8736665 -175551997 + MLT1B LTR MaLR 1 390 0 1409 216 26 31 chr4 8736665 8736852 -175551810 - L1ME LINE L1 -616 5546 5360 395 277 31 15 chr4 8737338 8737468 -175551194 - MER63A DNA MER1_type -26 184 53 264 143 0 0 chr4 8737563 8737605 -175551057 + (TGAA)n Simple_repeat Simple_repeat 4 45 0 981 162 9 12 chr4 8737607 8737936 -175550726 + (TGAG)n Simple_repeat Simple_repeat 1 327 0 307 371 111 22 chr4 8738252 8738613 -175550049 - L2 LINE L2 -3 3269 2877 201 278 19 0 chr4 8738622 8738676 -175549986 + L2 LINE L2 3217 3271 -1 299 226 66 47 chr4 8738968 8739074 -175549588 - MIR3 SINE MIR 0 208 101 596 271 81 9 chr4 8740518 8740739 -175547923 + MLT1D LTR MaLR 261 497 -8 318 98 0 0 chr4 8742138 8742189 -175546473 + (TTCA)n Simple_repeat Simple_repeat 4 54 0 243 320 70 23 chr4 8742286 8742414 -175546248 - L2 LINE L2 0 3313 3180 605 136 39 13 chr4 8742748 8742903 -175545759 + (TGGA)n Simple_repeat Simple_repeat 4 162 0 228 317 37 0 chr4 8743500 8743582 -175545080 + L2 LINE L2 3188 3272 0 240 255 20 0 chr4 8744753 8744804 -175543858 + C-rich Low_complexity Low_complexity 4 55 0 339 200 88 0 chr4 8744997 8745077 -175543585 - MIR SINE MIR -110 152 66 195 238 79 16 chr4 8745337 8745400 -175543262 + L3 LINE CR1 968 1034 -543 192 300 0 33 chr4 8746115 8746175 -175542487 + L3 LINE CR1 1410 1467 -110 217 339 0 0 chr4 8748842 8748904 -175539758 + MIR SINE MIR 92 153 -55 351 157 0 96 chr4 8749051 8749249 -175539413 + (CAGCC)n Simple_repeat Simple_repeat 2 180 0 384 171 0 67 chr4 8749277 8749470 -175539192 + (CAGCC)n Simple_repeat Simple_repeat 1 180 0 443 141 0 70 chr4 8749515 8749700 -175538962 + (CAGCC)n Simple_repeat Simple_repeat 2 173 0 387 162 0 70 chr4 8749731 8749916 -175538746 + (CAGCC)n Simple_repeat Simple_repeat 2 173 0 769 241 126 27 chr4 8750488 8750917 -175537745 - MLT1C LTR MaLR -17 488 10 1510 271 121 2 chr4 8751237 8751808 -175536854 + L1MC3 LINE L1 7077 7715 -70 263 263 222 0 chr4 8751858 8751957 -175536705 + MIR SINE MIR 14 134 -128 318 127 0 48 chr4 8751966 8752029 -175536633 + L1MD3 LINE L1 7923 7982 -13 195 209 47 0 chr4 8752804 8752847 -175535815 + MIR SINE MIR 14 58 -204 312 127 0 0 chr4 8752987 8753042 -175535620 + (TGAA)n Simple_repeat Simple_repeat 2 56 0 1054 269 73 24 chr4 8753405 8753829 -175534833 - MLT1C LTR MaLR 0 467 23 341 242 87 27 chr4 8754659 8754808 -175533854 + L1ME4a LINE L1 5952 6109 -12 2233 104 7 0 chr4 8754998 8755297 -175533365 - AluSx SINE Alu -11 301 1 365 300 27 9 chr4 8755914 8756024 -175532638 + L2 LINE L2 3201 3312 -1 270 279 0 0 chr4 8756024 8756085 -175532577 - MIR SINE MIR -92 170 110 251 350 8 8 chr4 8756170 8756290 -175532372 - L2 LINE L2 -220 3052 2933 230 359 127 0 chr4 8756329 8756471 -175532191 - MIR SINE MIR -26 236 77 187 239 69 92 chr4 8756507 8756637 -175532025 + L3 LINE CR1 1375 1501 -76 501 225 18 0 chr4 8756934 8757045 -175531617 - MER45 DNA AcHobo -840 113 1 243 0 0 0 chr4 8758581 8758608 -175530054 + (CA)n Simple_repeat Simple_repeat 2 28 0 398 248 28 0 chr4 8758750 8758859 -175529803 - MER45C DNA AcHobo -759 194 83 574 214 6 16 chr4 8760682 8760864 -175527798 + (TGAG)n Simple_repeat Simple_repeat 1 180 0 220 188 42 0 chr4 8760866 8760914 -175527748 + (TGAA)n Simple_repeat Simple_repeat 3 52 0 1071 150 1 6 chr4 8760914 8761708 -175526954 + (TGAG)n Simple_repeat Simple_repeat 1 789 0 204 40 0 0 chr4 8762637 8762662 -175526000 + (A)n Simple_repeat Simple_repeat 1 25 0 378 281 119 24 chr4 8763271 8763481 -175525181 + MIR SINE MIR 31 260 -2 253 352 37 15 chr4 8763939 8764108 -175524554 + MIR SINE MIR 3 172 -68 402 282 22 66 chr4 8764299 8764500 -175524162 + MIR3 SINE MIR 15 206 -56 468 136 0 0 chr4 8765272 8765360 -175523302 + (TGAG)n Simple_repeat Simple_repeat 2 89 0 327 98 0 20 chr4 8765699 8765750 -175522912 + (GGA)n Simple_repeat Simple_repeat 1 50 0 464 371 125 0 chr4 8766891 8767171 -175521491 - L3 LINE CR1 -33 1544 1230 360 274 75 52 chr4 8767348 8767600 -175521062 + L2 LINE L2 2842 3099 -173 1261 246 62 42 chr4 8767843 8768340 -175520322 - MER90 LTR ERV1 0 614 108 310 313 0 0 chr4 8769637 8769717 -175518945 + L2 LINE L2 3211 3290 -23 331 330 19 0 chr4 8769832 8769935 -175518727 - MIR SINE MIR -111 151 47 273 347 28 94 chr4 8770043 8770478 -175518184 - L2 LINE L2 -1 3312 2907 329 281 58 28 chr4 8771823 8772103 -175516559 - L1ME4a LINE L1 -230 5891 5594 300 422 12 12 chr4 8772173 8772334 -175516328 - L1ME4a LINE L1 -637 5484 5324 5556 182 55 36 chr4 8772511 8773939 -175514723 + L1M4c LINE L1 1 1456 -4928 498 139 0 0 chr4 8774056 8774128 -175514534 - AluS SINE Alu -239 73 2 747 179 0 19 chr4 8774130 8774286 -175514376 + L1M4c LINE L1 1445 1597 -4787 474 320 10 10 chr4 8774584 8774778 -175513884 + MLT1J LTR MaLR 23 216 -295 553 345 93 13 chr4 8775045 8775433 -175513229 + L1ME4a LINE L1 5478 5896 -225 2425 59 20 3 chr4 8776184 8776490 -175512172 + AluY SINE Alu 1 311 0 191 323 16 0 chr4 8777443 8777505 -175511157 + L2 LINE L2 3249 3311 -2 450 219 21 20 chr4 8777697 8777828 -175510834 - MIR SINE MIR -43 165 33 227 255 0 0 chr4 8778154 8778205 -175510457 + C-rich Low_complexity Low_complexity 4 54 0 655 169 272 0 chr4 8778225 8778438 -175510224 - MER58D DNA MER1_type 0 386 116 180 343 125 46 chr4 8778874 8779090 -175509572 - L2 LINE L2 -10 3262 3030 453 244 17 9 chr4 8779272 8779387 -175509275 + MIR SINE MIR 6 121 -141 693 298 48 4 chr4 8779637 8779865 -175508797 + MIR SINE MIR 6 243 -19 655 251 184 43 chr4 8780202 8780621 -175508041 + MLT1D LTR MaLR 3 480 -25 530 241 60 79 chr4 8781758 8782023 -175506639 + MLT1D-int LTR MaLR 1112 1371 0 1792 215 36 32 chr4 8782028 8782525 -175506137 + MLT1D LTR MaLR 6 504 -1 251 193 96 36 chr4 8782585 8782668 -175505994 + MIR SINE MIR 174 261 -1 201 224 41 0 chr4 8782683 8782732 -175505930 + MIR SINE MIR 78 128 -134 353 209 228 25 chr4 8783974 8784132 -175504530 - MLT1F1 LTR MaLR -14 535 346 441 293 95 32 chr4 8784158 8784441 -175504221 - MLT1H LTR MaLR -102 447 147 221 282 18 3 chr4 8784533 8784601 -175504061 - MIR SINE MIR -119 89 21 938 214 45 15 chr4 8785026 8785292 -175503370 - L1MB7 LINE L1 -9 6175 5902 234 261 0 0 chr4 8785586 8785632 -175503030 - MIR SINE MIR -106 156 111 348 314 42 0 chr4 8785841 8785959 -175502703 - MIR SINE MIR -90 172 50 316 232 24 0 chr4 8787328 8787410 -175501252 + MIR SINE MIR 61 144 -118 434 275 186 36 chr4 8787575 8787822 -175500840 - L2 LINE L2 0 3272 2989 197 181 28 56 chr4 8788487 8788559 -175500103 - L2 LINE L2 -176 3096 3027 272 278 52 61 chr4 8790094 8790209 -175498453 + L2 LINE L2 3200 3313 0 240 217 83 75 chr4 8792661 8792781 -175495881 + MIR SINE MIR 25 145 -117 453 149 0 0 chr4 8794154 8794228 -175494434 + MIR SINE MIR 71 144 -118 523 273 40 48 chr4 8795536 8795785 -175492877 - MER46C DNA MER2_type -2 336 90 950 177 89 7 chr4 8795859 8796227 -175492435 - MER31A LTR ERV1 -7 478 27 243 241 17 0 chr4 8796520 8796578 -175492084 + MIR SINE MIR 87 145 -63 688 206 265 5 chr4 8796824 8797043 -175491619 - MLT1F1 LTR MaLR -285 282 7 365 306 106 6 chr4 8798222 8798382 -175490280 + L2 LINE L2 2994 3169 -103 181 232 29 0 chr4 8798751 8798820 -175489842 + (TCCA)n Simple_repeat Simple_repeat 1 71 0 867 169 16 0 chr4 8798843 8799151 -175489511 + (TCCA)n Simple_repeat Simple_repeat 1 313 0 281 293 213 32 chr4 8799587 8799935 -175488727 + L2 LINE L2 2859 3269 -3 215 327 52 59 chr4 8799951 8800104 -175488558 - MIR3 SINE MIR -45 163 12 239 156 39 0 chr4 8800236 8800293 -175488369 + MIR SINE MIR 99 157 -62 343 244 62 31 chr4 8801185 8801378 -175487284 - L1ME4a LINE L1 -1 6120 5922 408 277 54 8 chr4 8801770 8801940 -175486722 - MIR3 SINE MIR -46 162 37 228 122 0 0 chr4 8802474 8802515 -175486147 + (CA)n Simple_repeat Simple_repeat 2 42 0 3165 234 71 40 chr4 8802668 8803626 -175485036 + L1MD1 LINE L1 4813 5831 -411 2020 132 0 3 chr4 8803626 8803922 -175484740 + AluSx SINE Alu 1 295 -17 3165 234 71 40 chr4 8803922 8804342 -175484320 + L1MD1 LINE L1 5831 6237 -5 378 107 0 0 chr4 8804474 8804530 -175484132 + (TGG)n Simple_repeat Simple_repeat 1 56 0 218 350 21 43 chr4 8805084 8805224 -175483438 - L2 LINE L2 -453 2861 2725 250 312 37 17 chr4 8805399 8805530 -175483132 + MIR SINE MIR 15 147 -74 1492 127 5 9 chr4 8805828 8806071 -175482591 + AluSg SINE Alu 62 303 0 323 187 80 0 chr4 8806522 8806597 -175482065 + MIR SINE MIR 64 144 -64 228 180 20 40 chr4 8807203 8807253 -175481409 - MIR SINE MIR -56 152 104 191 318 0 35 chr4 8808502 8808587 -175480075 - L2 LINE L2 -254 3018 2937 290 281 39 18 chr4 8809419 8809557 -175479105 - MLT1J1 LTR MaLR -303 143 27 2830 194 71 2 chr4 8809696 8810326 -175478336 + L1MB7 LINE L1 5444 6117 -67 22 0 0 0 chr4 8814695 8814717 -175473945 + AT_rich Low_complexity Low_complexity 1 22 0 1272 241 49 11 chr4 8815566 8815936 -175472726 + L1MB3 LINE L1 5584 5967 -216 769 152 0 43 chr4 8815936 8816074 -175472588 + FLAM_C SINE Alu 2 133 -10 906 148 0 7 chr4 8816116 8816265 -175472397 + L1MB3 LINE L1 6036 6183 0 1753 128 7 15 chr4 8816510 8816783 -175471879 + AluJo SINE Alu 14 284 -28 195 248 194 52 chr4 8817383 8817586 -175471076 + MIR SINE MIR 1 227 -35 1647 166 24 7 chr4 8819475 8819764 -175468898 + AluJb SINE Alu 1 294 -18 250 283 81 52 chr4 8820148 8820321 -175468341 - MIR3 SINE MIR -7 201 24 227 322 116 42 chr4 8821992 8822346 -175466316 - L2 LINE L2 -1321 1993 1614 387 290 131 11 chr4 8822722 8822898 -175465764 + L2 LINE L2 3082 3278 -35 396 223 12 2 chr4 8822902 8822998 -175465664 + FLAM_A SINE Alu 1 83 -50 223 273 38 15 chr4 8823009 8823141 -175465521 + (TA)n Simple_repeat Simple_repeat 1 135 0 191 280 25 0 chr4 8823299 8823352 -175465310 - MIR SINE MIR -68 140 97 1368 262 89 12 chr4 8825004 8825497 -175463165 + MER90 LTR ERV1 84 614 0 381 333 20 41 chr4 8826736 8826982 -175461680 - L2 LINE L2 -825 2489 2249 830 286 92 64 chr4 8827127 8827833 -175460829 - L2 LINE L2 -1449 1865 1140 2387 47 3 10 chr4 8828788 8829087 -175459575 + AluY SINE Alu 1 297 -14 264 241 73 58 chr4 8829326 8829463 -175459199 + HAL1b LINE L1 315 453 -895 2098 320 92 44 chr4 8830451 8830887 -175457775 - ERVL LTR ERVL -2930 2834 2420 2136 121 156 3 chr4 8830887 8831258 -175457404 - MSTA LTR MaLR 0 428 1 2098 320 92 44 chr4 8831258 8832252 -175456410 - ERVL LTR ERVL -3344 2420 1335 2185 68 10 0 chr4 8832580 8832872 -175455790 + AluSq SINE Alu 1 295 -18 198 289 0 0 chr4 8832894 8832946 -175455716 + MIR SINE MIR 189 240 -22 2680 93 8 3 chr4 8833349 8833702 -175454960 + THE1A LTR MaLR 1 355 0 1200 176 15 0 chr4 8837102 8837307 -175451355 + AluJb SINE Alu 84 291 -21 297 308 13 0 chr4 8837711 8837789 -175450873 + L2 LINE L2 3235 3313 0 675 256 92 5 chr4 8837826 8838033 -175450629 + MIR SINE MIR 32 256 -6 243 146 0 0 chr4 8838534 8838575 -175450087 + (TG)n Simple_repeat Simple_repeat 2 42 0 198 402 12 30 chr4 8839896 8840065 -175448597 + L2 LINE L2 3030 3195 -77 424 309 26 7 chr4 8840235 8840387 -175448275 + MIR SINE MIR 34 188 -74 370 296 117 15 chr4 8841797 8841993 -175446669 + MIR SINE MIR 35 250 -12 699 183 9 0 chr4 8842691 8842806 -175445856 + FLAM_A SINE Alu 1 116 -17 2204 102 0 0 chr4 8845306 8845599 -175443063 - AluSx SINE Alu -19 293 1 210 299 13 13 chr4 8847284 8847361 -175441301 + L2 LINE L2 3194 3270 -2 1581 205 3 3 chr4 8847814 8848112 -175440550 + AluJb SINE Alu 1 298 -14 232 176 39 0 chr4 8848877 8848928 -175439734 + MER58A DNA MER1_type 27 79 -28 297 254 45 0 chr4 8848960 8849027 -175439635 + MER58A DNA MER1_type 155 224 0 180 171 0 0 chr4 8849046 8849081 -175439581 - L2 LINE L2 -3 3310 3276 322 158 12 98 chr4 8849183 8849265 -175439397 + MER21B LTR ERV1 1 75 -788 1444 231 60 10 chr4 8849325 8849710 -175438952 + MER21B LTR ERV1 292 695 -168 245 275 66 0 chr4 8851307 8851398 -175437264 - MIR3 SINE MIR -3 205 109 22 0 0 0 chr4 8852600 8852622 -175436040 + AT_rich Low_complexity Low_complexity 1 22 0 280 396 26 13 chr4 8853615 8853769 -175434893 - MIR3 SINE MIR -15 193 38 1790 244 70 52 chr4 8853770 8853839 -175434823 - Charlie1a DNA MER1_type -1404 1357 1291 1609 155 34 30 chr4 8853839 8854135 -175434527 + AluJb SINE Alu 14 310 -2 1790 244 70 52 chr4 8854135 8855351 -175433311 - Charlie1a DNA MER1_type -1470 1291 1 21 57 0 0 chr4 8855426 8855461 -175433201 + AT_rich Low_complexity Low_complexity 1 35 0 860 190 118 10 chr4 8855551 8855746 -175432916 + MER58A DNA MER1_type 1 216 -8 2213 120 0 13 chr4 8856782 8857090 -175431572 - AluJo SINE Alu -8 304 1 2423 62 3 3 chr4 8857678 8857967 -175430695 - AluY SINE Alu 0 311 23 3252 249 69 79 chr4 8858265 8858732 -175429930 + L1MC4 LINE L1 6614 7084 -911 2512 66 3 7 chr4 8858732 8859037 -175429625 + AluY SINE Alu 1 304 -7 2180 116 7 7 chr4 8859042 8859335 -175429327 + AluSx SINE Alu 1 293 -19 3252 249 69 79 chr4 8859335 8860316 -175428346 + L1MC4 LINE L1 7088 7994 -1 278 329 74 27 chr4 8861345 8861494 -175427168 - MIR3 SINE MIR -49 159 4 469 272 159 20 chr4 8863265 8863460 -175425202 + L3 LINE CR1 1233 1454 -123 674 168 0 0 chr4 8864087 8864206 -175424456 + FLAM_A SINE Alu 24 142 0 210 333 0 14 chr4 8864697 8864766 -175423896 - MIR SINE MIR -62 146 79 2336 64 0 30 chr4 8864897 8865193 -175423469 - AluY SINE Alu -4 307 21 557 238 0 0 chr4 8867338 8867464 -175421198 - FLAM_A SINE Alu -7 126 1 180 296 0 0 chr4 8867559 8867603 -175421059 - MIR3 SINE MIR -3 205 162 216 306 109 34 chr4 8867789 8867936 -175420726 - MIR SINE MIR -16 246 89 295 266 85 11 chr4 8867946 8868040 -175420622 - L2 LINE L2 -7 3306 3206 379 351 20 0 chr4 8869258 8869406 -175419256 + MIR3 SINE MIR 30 180 -28 2000 169 54 12 chr4 8870888 8871295 -175417367 + MSTB LTR MaLR 1 424 -2 1233 67 0 0 chr4 8871324 8871489 -175417173 - L1PA2 LINE L1 0 6155 5991 2050 133 3 13 chr4 8872126 8872427 -175416235 - AluJb SINE Alu -14 298 1 223 320 64 0 chr4 8872428 8872506 -175416156 - L2 LINE L2 -5 3308 3226 317 299 146 18 chr4 8872576 8872740 -175415922 - L2 LINE L2 -253 3060 2876 371 301 114 5 chr4 8872839 8873058 -175415604 + Charlie8 DNA MER1_type 1 243 -2174 804 241 97 0 chr4 8873882 8874119 -175414543 + MLT1B LTR MaLR 131 390 0 2878 84 7 5 chr4 8875141 8875567 -175413095 + L1P5 LINE L1 5365 5791 -360 229 161 0 0 chr4 8875560 8875616 -175413046 + L1MC4 LINE L1 6648 6703 -1339 * 303 191 0 0 chr4 8875618 8875681 -175412981 + (TA)n Simple_repeat Simple_repeat 1 63 0 2532 80 14 11 chr4 8875681 8876042 -175412620 + L1PB1 LINE L1 5782 6143 -8 34 42 0 0 chr4 8876073 8876121 -175412541 + AT_rich Low_complexity Low_complexity 1 48 0 1992 113 0 0 chr4 8876788 8877045 -175411617 - AluSq SINE Alu -56 257 1 1844 149 13 17 chr4 8877049 8877350 -175411312 - AluJb SINE Alu -12 300 1 1277 216 47 40 chr4 8878000 8878490 -175410172 + MER51C LTR ERV1 3 536 -104 1928 108 0 0 chr4 8878861 8879110 -175409552 - AluSg SINE Alu -61 249 1 675 205 13 0 chr4 8879111 8879262 -175409400 + L1MB5 LINE L1 6021 6173 -1 1286 124 47 0 chr4 8879266 8879500 -175409162 + L1MB3 LINE L1 5934 6178 -5 368 115 0 0 chr4 8879588 8879649 -175409013 + L1MC2 LINE L1 6271 6331 -13 192 118 0 0 chr4 8879745 8879754 -175408908 + (TTAGGG)n Simple_repeat Simple_repeat 2 10 -25 7104 43 0 2 chr4 8879754 8881249 -175407413 + L1PA5 LINE L1 4662 6154 0 192 118 0 0 chr4 8881249 8881273 -175407389 + (TTAGGG)n Simple_repeat Simple_repeat 9 35 0 1671 175 83 6 chr4 8881366 8881714 -175406948 - MLT1E2 LTR MaLR -6 620 246 21 0 0 0 chr4 8881721 8881742 -175406920 + GC_rich Low_complexity Low_complexity 1 21 0 739 184 20 169 chr4 8881772 8882115 -175406547 - MLT1E2 LTR MaLR -334 292 1 2297 97 0 3 chr4 8882514 8882813 -175405849 - AluSx SINE Alu -14 298 1 1620 86 16 19 chr4 8883508 8883764 -175404898 - MER51C LTR ERV1 -1 639 385 471 308 73 89 chr4 8883871 8884420 -175404242 + L1M4 LINE L1 2754 3408 -2738 388 293 27 20 chr4 8884505 8884652 -175404010 + L2 LINE L2 3125 3272 0 199 307 35 18 chr4 8884956 8885070 -175403592 + L2 LINE L2 2874 2989 -324 183 340 85 0 chr4 8885251 8885345 -175403317 + L2 LINE L2 3165 3266 -47 395 347 62 12 chr4 8885790 8886032 -175402630 + L3 LINE CR1 1218 1471 -106 246 240 0 0 chr4 8886285 8886335 -175402327 + L1ME4a LINE L1 5697 5746 -2062 264 286 36 0 chr4 8886337 8886421 -175402241 + L2 LINE L2 3162 3248 -65 2253 132 0 0 chr4 8886535 8886846 -175401816 + AluSx SINE Alu 1 311 -1 278 291 43 8 chr4 8886900 8887017 -175401645 + L1ME4a LINE L1 5998 6118 -3 263 317 0 10 chr4 8887598 8887702 -175400960 + L3 LINE CR1 1419 1521 -56 188 228 123 0 chr4 8888085 8888142 -175400520 + MIR SINE MIR 52 115 -147 313 221 0 12 chr4 8888510 8888596 -175400066 - MIR SINE MIR -139 123 39 2242 128 7 0 chr4 8888662 8888968 -175399694 - AluSx SINE Alu 0 312 5 403 250 46 9 chr4 8889559 8889667 -175398995 - MIR3 SINE MIR -14 194 83 317 237 10 10 chr4 8889826 8889923 -175398739 + MIR SINE MIR 39 135 -127 790 271 34 78 chr4 8890228 8890641 -175398021 - L2 LINE L2 0 3313 2919 235 194 328 0 chr4 8891322 8891389 -175397273 + MIR SINE MIR 38 126 -82 * 491 276 24 35 chr4 8891388 8891558 -175397104 - L3 LINE CR1 -2 1575 1408 408 287 89 0 chr4 8891605 8891750 -175396912 + MIR SINE MIR 34 192 -62 2867 134 8 102 chr4 8892025 8892116 -175396546 - L1MB3 LINE L1 -1 6182 6084 1573 187 61 0 chr4 8892116 8892394 -175396268 + AluJo SINE Alu 1 295 -17 2867 134 8 102 chr4 8892394 8892410 -175396252 - L1MB3 LINE L1 -99 6084 6068 2382 101 0 0 chr4 8892410 8892706 -175395956 + AluSx SINE Alu 1 296 -16 2460 97 0 0 chr4 8892708 8893019 -175395643 + AluY SINE Alu 1 311 0 2867 134 8 102 chr4 8893019 8893309 -175395353 - L1MB3 LINE L1 -116 6067 5863 1830 132 40 0 chr4 8893309 8893582 -175395080 - AluJb SINE Alu -17 295 12 2867 134 8 102 chr4 8893582 8893829 -175394833 - L1MB3 LINE L1 -320 5863 5594 873 118 67 0 chr4 8893831 8893950 -175394712 - AluJo SINE Alu -177 135 9 405 185 32 140 chr4 8893962 8894100 -175394562 - L1MB3 LINE L1 -585 5598 5477 261 0 0 0 chr4 8894100 8894129 -175394533 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 405 185 32 140 chr4 8894129 8894147 -175394515 - L1MB3 LINE L1 -706 5477 5459 2374 82 3 10 chr4 8895071 8895376 -175393286 + AluSp SINE Alu 1 303 -10 27 29 0 0 chr4 8897193 8897227 -175391435 + AT_rich Low_complexity Low_complexity 1 34 0 2563 72 0 0 chr4 8897227 8897533 -175391129 + AluY SINE Alu 1 306 -5 278 238 188 0 chr4 8897794 8897895 -175390767 + MIR SINE MIR 34 153 -55 212 281 22 45 chr4 8897995 8898025 -175390637 - MIR SINE MIR -70 192 163 2002 144 0 26 chr4 8898025 8898337 -175390325 - AluJo SINE Alu -8 304 1 212 281 22 45 chr4 8898337 8898395 -175390267 - MIR SINE MIR -99 163 106 244 281 34 22 chr4 8898453 8898542 -175390120 + L1ME4a LINE L1 5963 6052 -69 1202 144 0 11 chr4 8898555 8898742 -175389920 - AluSg/x SINE Alu -6 304 120 242 337 47 0 chr4 8899054 8899140 -175389522 + L2 LINE L2 3143 3232 -40 2105 141 0 3 chr4 8900832 8901145 -175387517 + AluJb SINE Alu 1 312 0 280 216 72 36 chr4 8901203 8901314 -175387348 - MIR3 SINE MIR -7 201 87 354 232 149 66 chr4 8901827 8902068 -175386594 + L1MC5 LINE L1 7494 7754 -207 481 128 26 0 chr4 8902102 8902180 -175386482 + AluSc SINE Alu 214 293 -16 909 194 23 60 chr4 8902180 8902396 -175386266 - LTR8A LTR ERV1 -243 484 277 1152 140 0 0 chr4 8902510 8902688 -175385974 + MER41C LTR ERV1 377 554 0 1573 153 8 4 chr4 8905194 8905435 -175383227 - AluJb SINE Alu -45 267 26 1657 147 39 70 chr4 8905559 8905710 -175382952 + AluJb SINE Alu 1 138 -174 2037 110 43 3 chr4 8905710 8905992 -175382670 + AluSx SINE Alu 1 293 -19 1657 147 39 70 chr4 8905992 8906152 -175382510 + AluJb SINE Alu 138 302 -10 210 222 44 0 chr4 8906329 8906374 -175382288 + MIR3 SINE MIR 108 154 -54 1905 157 3 0 chr4 8906386 8906686 -175381976 + AluJo SINE Alu 1 301 -11 2307 83 3 25 chr4 8906827 8907141 -175381521 - AluY SINE Alu -4 307 1 3432 135 19 19 chr4 8908472 8909041 -175379621 + L1MB4 LINE L1 5588 6156 -24 1908 133 77 17 chr4 8909054 8909406 -175379256 + THE1C LTR MaLR 1 373 -2 2095 128 0 6 chr4 8909935 8910247 -175378415 - AluSq SINE Alu -3 310 1 2312 65 0 20 chr4 8910754 8911069 -175377593 + AluY SINE Alu 1 311 0 1290 134 0 0 chr4 8911069 8911248 -175377414 + AluSg/x SINE Alu 134 312 0 1507 159 25 70 chr4 8911289 8911603 -175377059 + AluJo SINE Alu 1 300 -12 345 24 0 0 chr4 8911604 8911646 -175377016 + (GGAA)n Simple_repeat Simple_repeat 2 43 0 314 227 21 31 chr4 8911657 8911754 -175376908 + L1ME4a LINE L1 5966 6061 -60 1238 155 9 31 chr4 8912721 8912931 -175375731 + AluJo SINE Alu 86 292 -20 2434 85 0 0 chr4 8912931 8913237 -175375425 + AluSg SINE Alu 1 306 -4 1238 155 9 31 chr4 8913237 8913252 -175375410 + AluJo SINE Alu 292 306 -6 2162 96 10 3 chr4 8913405 8913698 -175374964 + AluSq SINE Alu 1 295 -18 298 278 38 105 chr4 8914197 8914406 -175374256 + MIR SINE MIR 57 251 -11 181 152 0 0 chr4 8915371 8915404 -175373258 + L2 LINE L2 3021 3053 -260 2275 93 0 35 chr4 8916707 8917019 -175371643 - AluSq SINE Alu -12 301 1 278 239 176 28 chr4 8917177 8917353 -175371309 - MIR SINE MIR -33 229 28 2335 99 3 0 chr4 8917791 8918094 -175370568 - AluSx SINE Alu -8 304 1 1685 137 56 14 chr4 8918701 8918869 -175369793 - AluJb SINE Alu -15 297 111 180 0 0 0 chr4 8918869 8918889 -175369773 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1685 137 56 14 chr4 8918889 8919005 -175369657 - AluJb SINE Alu -201 111 1 272 255 122 20 chr4 8919273 8919371 -175369291 - MIR SINE MIR -131 131 24 230 146 73 0 chr4 8919546 8919557 -175369105 + (CAGAA)n Simple_repeat Simple_repeat 1 10 -358 2155 110 3 7 chr4 8919557 8919847 -175368815 + AluSq SINE Alu 1 289 -24 230 146 73 0 chr4 8919847 8919889 -175368773 + (CAGAA)n Simple_repeat Simple_repeat 10 368 0 717 298 9 0 chr4 8919925 8920140 -175368522 + MIR SINE MIR 40 256 -6 215 258 21 43 chr4 8920314 8920407 -175368255 + MIR3 SINE MIR 112 202 -6 29 0 0 0 chr4 8920424 8920453 -175368209 + AT_rich Low_complexity Low_complexity 1 29 0 283 109 0 0 chr4 8920453 8920499 -175368163 - AluSc SINE Alu 0 299 254 466 37 0 111 chr4 8920599 8920680 -175367982 + L1PA2 LINE L1 6084 6155 0 492 283 28 28 chr4 8921360 8921611 -175367051 + L1MCa LINE L1 1404 1654 -4772 * 836 88 1 33 chr4 8921592 8921730 -175366932 + L1PB1 LINE L1 5659 5791 -360 417 241 0 0 chr4 8921731 8921843 -175366819 + (TA)n Simple_repeat Simple_repeat 2 113 0 2515 106 11 16 chr4 8921843 8922220 -175366442 + L1PB1 LINE L1 5776 6150 -1 304 222 21 0 chr4 8922241 8922317 -175366345 + L1M1 LINE L1 2887 3288 -4278 1240 180 171 59 chr4 8922317 8922673 -175365989 + MSTD LTR MaLR 1 396 0 559 199 85 50 chr4 8922729 8922930 -175365732 + L1MCa LINE L1 2039 2246 -4361 307 248 8 26 chr4 8922939 8923056 -175365606 + L1M1 LINE L1 3557 3671 -3894 5843 170 21 24 chr4 8923177 8924991 -175363671 - L1PA16 LINE L1 -1 6165 4367 2266 113 0 0 chr4 8925027 8925328 -175363334 - AluSg1 SINE Alu -8 301 1 2772 229 132 21 chr4 8925383 8925934 -175362728 + L1M1 LINE L1 3661 4149 -3416 1762 98 8 16 chr4 8925934 8926178 -175362484 + AluY SINE Alu 1 242 -69 2772 229 132 21 chr4 8926178 8926867 -175361795 + L1M1 LINE L1 4149 5110 -2455 2521 56 3 3 chr4 8926867 8927169 -175361493 + AluY SINE Alu 1 302 -9 2772 229 132 21 chr4 8927169 8927263 -175361399 + L1M1 LINE L1 5110 5192 -2373 182 314 64 71 chr4 8928648 8928788 -175359874 + MIR3 SINE MIR 3 141 -67 1158 79 0 0 chr4 8929320 8929472 -175359190 + AluY SINE Alu 160 311 0 2223 109 0 7 chr4 8929612 8929914 -175358748 - AluSx SINE Alu -12 300 1 26 64 0 0 chr4 8930329 8930376 -175358286 + AT_rich Low_complexity Low_complexity 1 47 0 2245 116 0 10 chr4 8930511 8930814 -175357848 + AluSx SINE Alu 1 300 -12 1201 188 127 68 chr4 8931423 8931820 -175356842 - L1M4 LINE L1 -1479 4667 4141 2149 194 124 10 chr4 8931821 8932330 -175356332 - Cheshire DNA MER1_type -299 2121 1555 505 122 0 0 chr4 8932584 8932658 -175356004 + AluS SINE Alu 3 76 -234 285 271 156 65 chr4 8933046 8933386 -175355276 + MLT1K LTR MaLR 184 554 -34 2031 135 10 0 chr4 8934256 8934553 -175354109 - AluSx SINE Alu -12 300 1 198 0 0 0 chr4 8934650 8934672 -175353990 + (A)n Simple_repeat Simple_repeat 1 22 0 1978 149 0 0 chr4 8934921 8935210 -175353452 + AluJb SINE Alu 11 299 -13 288 191 135 11 chr4 8935212 8935301 -175353361 - HAL1 LINE L1 -871 1636 1537 5072 64 0 5 chr4 8935463 8936103 -175352559 + L1PA6 LINE L1 5518 6154 0 1544 235 131 22 chr4 8936207 8936658 -175352004 + MLT1H1 LTR MaLR 43 542 -13 22 0 0 0 chr4 8936813 8936835 -175351827 + AT_rich Low_complexity Low_complexity 1 22 0 800 142 40 0 chr4 8937338 8937486 -175351176 + FRAM SINE Alu 22 175 -1 284 274 65 40 chr4 8937487 8937611 -175351051 - MIR SINE MIR -134 128 2 1797 128 0 4 chr4 8937912 8938162 -175350500 - AluJb SINE Alu -4 308 60 565 261 68 54 chr4 8938818 8938920 -175349742 - L2 LINE L2 -4 3309 3210 2334 97 0 0 chr4 8938920 8939218 -175349444 + AluSx SINE Alu 1 298 -14 565 261 68 54 chr4 8939218 8939395 -175349267 - L2 LINE L2 -103 3210 3026 524 197 146 0 chr4 8939866 8940003 -175348659 + L1ME3A LINE L1 6009 6165 -5 2470 77 0 13 chr4 8940215 8940527 -175348135 + AluSg SINE Alu 1 308 -2 238 229 16 33 chr4 8940618 8940679 -175347983 + MLT1K LTR MaLR 59 118 -470 2151 122 10 3 chr4 8940862 8941165 -175347497 + AluSx SINE Alu 1 305 -7 421 278 96 32 chr4 8941283 8941470 -175347192 + MIR SINE MIR 64 262 0 1492 276 128 25 chr4 8942089 8942796 -175345866 + L1MC4 LINE L1 7038 7951 -91 1234 175 44 0 chr4 8942796 8943070 -175345592 + L1MA4 LINE L1 6012 6297 -3 1492 276 128 25 chr4 8943070 8943173 -175345489 + L1MC4 LINE L1 7951 8042 0 1155 168 34 10 chr4 8943179 8943387 -175345275 - AluJb SINE Alu -16 296 84 1257 159 48 0 chr4 8944858 8945066 -175343596 + AluJo SINE Alu 85 302 -10 1010 114 0 0 chr4 8945476 8945608 -175343054 + FRAM SINE Alu 22 153 -23 246 105 0 0 chr4 8945958 8945996 -175342666 + (TC)n Simple_repeat Simple_repeat 1 38 0 1810 143 11 25 chr4 8946014 8946300 -175342362 - AluJb SINE Alu -30 282 1 24 0 0 0 chr4 8947415 8947439 -175341223 + AT_rich Low_complexity Low_complexity 1 24 0 716 237 6 34 chr4 8947557 8947734 -175340928 + FAM SINE Alu 2 173 -2 5723 17 0 2 chr4 8948131 8948768 -175339894 + L1PA3 LINE L1 5497 6132 -23 803 106 15 0 chr4 8948894 8949026 -175339636 + (TTTC)n Simple_repeat Simple_repeat 3 136 0 1831 106 0 0 chr4 8949038 8949275 -175339387 - AluSx SINE Alu -75 237 1 2852 145 19 0 chr4 8949300 8949770 -175338892 - L1MB3 LINE L1 -5 6178 5700 1876 157 3 19 chr4 8949775 8950088 -175338574 - AluJo SINE Alu -4 308 1 460 299 95 4 chr4 8950207 8950438 -175338224 - MIR SINE MIR -3 259 8 446 238 180 12 chr4 8951348 8951520 -175337142 - MIR SINE MIR -14 248 48 731 138 8 8 chr4 8951699 8951822 -175336840 + MLT1D LTR MaLR 9 131 -374 236 317 118 42 chr4 8951978 8952284 -175336378 + L2 LINE L2 2920 3248 -24 539 273 0 0 chr4 8952801 8952933 -175335729 - MIR SINE MIR -116 146 15 194 286 14 0 chr4 8953175 8953245 -175335417 - MIR SINE MIR -92 116 46 387 259 45 9 chr4 8953551 8953663 -175334999 + MIR SINE MIR 29 144 -64 817 211 0 87 chr4 8953835 8954043 -175334619 + MIR SINE MIR 33 222 -40 323 255 170 0 chr4 8955013 8955107 -175333555 + MIR SINE MIR 34 143 -65 1614 166 29 37 chr4 8956131 8956481 -175332181 + MLT2C1 LTR ERVL 1 347 -50 2637 43 0 0 chr4 8956484 8956785 -175331877 + AluY SINE Alu 1 301 -10 900 184 6 12 chr4 8956785 8956948 -175331714 + AluJb SINE Alu 134 295 -17 266 221 116 0 chr4 8956956 8957042 -175331620 - L2 LINE L2 -274 2998 2903 402 289 177 15 chr4 8957461 8957721 -175330941 - L2 LINE L2 -654 2660 2359 703 272 42 89 chr4 8957811 8958171 -175330491 - MLT1J LTR MaLR -163 348 6 1643 179 3 35 chr4 8958703 8959025 -175329637 - AluJb SINE Alu 0 313 1 293 253 103 11 chr4 8959259 8959346 -175329316 - MIR SINE MIR -89 173 79 483 225 42 7 chr4 8959503 8959645 -175329017 - L1ME2 LINE L1 -74 6090 5944 250 175 53 35 chr4 8959658 8959736 -175328926 - AluYb8 SINE Alu 0 321 243 * 296 133 0 0 chr4 8959713 8959758 -175328904 - Alu SINE Alu -258 45 1 1700 160 43 69 chr4 8960501 8960720 -175327942 - MLT1A1 LTR MaLR 0 365 159 2304 98 0 7 chr4 8960720 8961027 -175327635 - AluSc SINE Alu -4 305 1 1700 160 43 69 chr4 8961027 8961182 -175327480 - MLT1A1 LTR MaLR -206 159 1 370 279 31 8 chr4 8961207 8961336 -175327326 - MLT1G LTR MaLR -449 141 10 229 234 0 0 chr4 8961361 8961408 -175327254 - MIR SINE MIR 0 262 216 366 150 87 0 chr4 8961682 8961809 -175326853 + (CCTG)n Simple_repeat Simple_repeat 3 140 0 218 350 162 5 chr4 8962743 8962940 -175325722 + MIR SINE MIR 28 255 -7 274 316 64 22 chr4 8963583 8963712 -175324950 + MIR SINE MIR 24 141 -67 669 242 42 9 chr4 8963722 8963937 -175324725 - HAL1 LINE L1 -1270 1237 1016 265 266 21 43 chr4 8964024 8964118 -175324544 - HAL1 LINE L1 -1966 541 450 552 236 205 0 chr4 8964303 8964498 -175324164 + MLT1H1 LTR MaLR 308 542 -13 292 225 28 14 chr4 8965238 8965309 -175323353 + MIR SINE MIR 80 151 -111 1588 184 9 35 chr4 8965385 8965700 -175322962 - AluJb SINE Alu -3 309 3 2408 64 7 13 chr4 8966160 8966458 -175322204 + AluSc SINE Alu 1 296 -13 235 274 84 22 chr4 8966470 8966696 -175321966 + L1ME2 LINE L1 5708 5947 -217 221 306 116 41 chr4 8967197 8967344 -175321318 + L2 LINE L2 2264 2421 -893 1014 125 79 0 chr4 8967346 8967498 -175321164 - AluSg/x SINE Alu -15 297 134 2039 128 21 0 chr4 8967498 8967788 -175320874 - AluSx SINE Alu -16 296 1 537 273 133 60 chr4 8967791 8968176 -175320486 + L2 LINE L2 2418 2830 -484 198 333 15 0 chr4 8968322 8968388 -175320274 + MIR SINE MIR 195 261 -1 1897 170 39 0 chr4 8968455 8968785 -175319877 + MER2 DNA MER2_type 2 344 0 23 0 0 0 chr4 8970030 8970053 -175318609 + AT_rich Low_complexity Low_complexity 1 23 0 2009 128 59 6 chr4 8970505 8970825 -175317837 - MER1B DNA MER1_type 0 337 1 216 234 21 0 chr4 8970895 8970942 -175317720 - L2 LINE L2 -2 3270 3223 724 149 14 61 chr4 8971635 8971783 -175316879 + FLAM_C SINE Alu 2 142 -1 2258 113 19 10 chr4 8972392 8972701 -175315961 + AluSx SINE Alu 1 312 0 1383 55 0 6 chr4 8972888 8973053 -175315609 + AluY SINE Alu 1 164 -147 325 189 20 40 chr4 8973239 8973595 -175315067 + (TG)n Simple_repeat Simple_repeat 1 348 0 637 118 16 53 chr4 8973645 8973832 -175314830 + (TG)n Simple_repeat Simple_repeat 1 180 0 549 203 206 103 chr4 8974612 8974893 -175313769 - MLT1G LTR MaLR -66 524 220 321 241 36 0 chr4 8975044 8975127 -175313535 - MIR3 SINE MIR -42 166 81 183 305 21 53 chr4 8975514 8975609 -175313053 + L2 LINE L2 2738 2829 -485 2186 182 35 7 chr4 8976226 8976683 -175311979 + L1MB3 LINE L1 5714 6183 0 409 267 0 19 chr4 8976778 8976883 -175311779 - MIR SINE MIR -96 166 64 219 88 0 0 chr4 8977148 8977182 -175311480 + (CA)n Simple_repeat Simple_repeat 2 35 0 342 45 0 0 chr4 8977304 8977348 -175311314 + (TG)n Simple_repeat Simple_repeat 2 45 0 2209 116 0 0 chr4 8977348 8977633 -175311029 - AluSq SINE Alu -28 285 1 231 61 0 0 chr4 8977788 8977821 -175310841 + (GA)n Simple_repeat Simple_repeat 1 33 0 311 297 95 34 chr4 8978397 8978545 -175310117 - L2 LINE L2 -2 3311 3155 2121 123 0 3 chr4 8979119 8979412 -175309250 - AluJo SINE Alu -17 295 4 634 227 64 36 chr4 8980078 8980298 -175308364 - L2 LINE L2 -529 2785 2560 1808 98 84 42 chr4 8980354 8980641 -175308021 - AluY SINE Alu -12 299 1 2535 50 0 40 chr4 8981173 8981496 -175307166 + AluY SINE Alu 1 310 -1 21 0 0 0 chr4 8981887 8981908 -175306754 + AT_rich Low_complexity Low_complexity 1 21 0 713 149 18 0 chr4 8982141 8982255 -175306407 + FLAM_A SINE Alu 1 116 -17 23 0 0 0 chr4 8982862 8982885 -175305777 + GC_rich Low_complexity Low_complexity 1 23 0 213 211 0 18 chr4 8982894 8982951 -175305711 + (CGCGG)n Simple_repeat Simple_repeat 4 59 0 242 356 12 6 chr4 8983145 8983305 -175305357 + (CG)n Simple_repeat Simple_repeat 1 161 0 478 271 41 58 chr4 8983348 8983541 -175305121 - L1ME3 LINE L1 0 6313 6009 518 309 6 12 chr4 8983873 8984035 -175304627 + MLT1F1-int LTR MaLR 701 861 -510 444 245 15 110 chr4 8984320 8984520 -175304142 + MLT1F1-int LTR MaLR 1107 1287 -84 434 246 22 93 chr4 8984642 8984825 -175303837 + MLT1F1 LTR MaLR 3 172 -370 574 184 0 0 chr4 8984839 8984937 -175303725 + MER4A LTR ERV1 1 98 -566 272 180 20 0 chr4 8984939 8984989 -175303673 + MER4A LTR ERV1 263 313 -351 2082 116 14 0 chr4 8985016 8985320 -175303342 + AluSx SINE Alu 3 310 0 186 43 0 0 chr4 8985326 8985349 -175303313 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1641 112 0 92 chr4 8985349 8985653 -175303009 + MER4A LTR ERV1 389 664 0 930 218 102 9 chr4 8985654 8985879 -175302783 + MLT1F1 LTR MaLR 201 446 -121 1725 151 20 87 chr4 8985892 8985961 -175302701 + MLT1A1 LTR MaLR 1 73 -292 2818 118 34 0 chr4 8985961 8986375 -175302287 + MSTA LTR MaLR 1 428 0 1725 151 20 87 chr4 8986375 8986469 -175302193 + MLT1A1 LTR MaLR 73 172 -193 1597 172 34 30 chr4 8986469 8986766 -175301896 + AluJo SINE Alu 1 298 -14 1725 151 20 87 chr4 8986766 8986778 -175301884 + MLT1A1 LTR MaLR 172 183 -182 2415 96 0 0 chr4 8986778 8987079 -175301583 + AluSq SINE Alu 1 301 -12 1725 151 20 87 chr4 8987079 8987292 -175301370 + MLT1A1 LTR MaLR 183 365 0 261 206 82 27 chr4 8987292 8987356 -175301306 + MLT1F1 LTR MaLR 496 563 -4 2009 222 38 12 chr4 8987377 8987610 -175301052 - L1ME LINE L1 -384 5778 5552 1315 193 60 83 chr4 8987610 8988009 -175300653 + MLT1B LTR MaLR 1 390 0 2009 222 38 12 chr4 8988009 8988370 -175300292 - L1ME LINE L1 -610 5552 5167 261 350 87 0 chr4 8988644 8988747 -175299915 - L2 LINE L2 -17 3255 3144 257 190 76 38 chr4 8989062 8989141 -175299521 + MIR SINE MIR 160 241 -21 380 301 81 43 chr4 8992748 8992934 -175295728 - MLT1I LTR MaLR 0 409 217 263 281 37 0 chr4 8993012 8993094 -175295568 + (CATA)n Simple_repeat Simple_repeat 3 87 0 313 307 64 42 chr4 8993317 8993581 -175295081 - HsTC2 DNA Tc2 -1133 765 496 859 284 153 6 chr4 8993627 8993947 -175294715 + L2 LINE L2 2947 3313 0 337 280 272 29 chr4 8994017 8994260 -175294402 + L2 LINE L2 2442 2743 -571 549 231 30 30 chr4 8994289 8994458 -175294204 - L2 LINE L2 -1 3312 3144 3173 202 36 11 chr4 8994839 8995474 -175293188 + MER82 DNA MER2_type 1 651 -2 360 59 0 0 chr4 8995672 8995723 -175292939 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 2041 237 15 46 chr4 8996079 8996686 -175291976 + L1MC4 LINE L1 6518 7105 -937 304 182 15 0 chr4 8996665 8996731 -175291931 + L1MC4a LINE L1 7158 7224 -584 * 502 241 97 14 chr4 8996724 8996736 -175291926 + L1MC4 LINE L1 7687 7697 -345 2282 108 3 0 chr4 8996736 8997032 -175291630 + AluSx SINE Alu 1 297 -15 502 241 97 14 chr4 8997032 8997226 -175291436 + L1MC4 LINE L1 7697 7910 -132 1982 115 10 20 chr4 8997292 8997597 -175291065 + AluSx SINE Alu 1 302 -10 2365 68 0 0 chr4 8997885 8998223 -175290439 + AluSx SINE Alu 1 312 0 1773 184 48 39 chr4 8998226 8998661 -175290001 + L1MB2 LINE L1 5731 6169 -2 761 169 15 0 chr4 8998740 8998870 -175289792 + AluJb SINE Alu 2 133 -179 329 247 43 99 chr4 8998879 8999041 -175289621 + L1ME LINE L1 5675 5827 -294 1973 161 0 13 chr4 8999044 8999360 -175289302 + AluJo SINE Alu 1 312 0 304 263 61 26 chr4 8999905 9000019 -175288643 - LTR67 LTR ERVL -331 226 109 836 160 8 0 chr4 9000111 9000236 -175288426 + AluJo/FLAM SINE Alu 1 126 -186 1922 114 0 67 chr4 9000237 9000553 -175288109 + AluY SINE Alu 1 295 -16 436 221 0 0 chr4 9000553 9000639 -175288023 + AluJ/FRAM SINE Alu 218 303 -9 2544 70 0 0 chr4 9001158 9001460 -175287202 + AluY SINE Alu 3 304 -7 2252 99 0 7 chr4 9001477 9001770 -175286892 + AluSq SINE Alu 6 296 -17 255 304 22 11 chr4 9002889 9002981 -175285681 - MIR SINE MIR -69 139 47 2076 141 0 3 chr4 9004047 9004360 -175284302 + AluJb SINE Alu 1 312 0 280 306 0 24 chr4 9004492 9004577 -175284085 + GA-rich Low_complexity Low_complexity 5 87 0 1660 206 73 23 chr4 9005937 9006500 -175282162 - MER39B LTR ERV1 -4 649 1 374 356 0 0 chr4 9007112 9007216 -175281446 + L1MC4 LINE L1 6600 6703 -1339 358 186 43 0 chr4 9007155 9007225 -175281437 - L1MCa LINE L1 -4358 2068 1996 * 261 163 0 0 chr4 9007226 9007275 -175281387 + (CATATA)n Simple_repeat Simple_repeat 6 54 0 216 0 0 0 chr4 9007278 9007302 -175281360 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1207 115 82 0 chr4 9007303 9007486 -175281176 - AluSg/x SINE Alu -32 278 81 2156 109 3 0 chr4 9007505 9007818 -175280844 - AluSx SINE Alu 0 314 1 981 167 0 0 chr4 9007821 9007983 -175280679 - FRAM SINE Alu -16 160 1 2231 83 10 0 chr4 9008313 9008602 -175280060 + AluSx SINE Alu 12 303 -9 246 325 48 0 chr4 9009808 9009891 -175278771 - MIR3 SINE MIR -30 178 92 1399 248 117 7 chr4 9010401 9010821 -175277841 - MLT1C LTR MaLR -1 466 1 227 343 59 59 chr4 9010889 9011093 -175277569 + MIR SINE MIR 41 244 -18 461 321 31 5 chr4 9011177 9011373 -175277289 - L2 LINE L2 -96 3176 2976 1640 192 35 66 chr4 9011485 9011907 -175276755 + LTR2 LTR ERV1 41 449 0 875 121 0 0 chr4 9012680 9012804 -175275858 + FLAM_C SINE Alu 9 132 -11 334 294 37 28 chr4 9012993 9013102 -175275560 + MIR3 SINE MIR 61 170 -38 364 186 202 23 chr4 9013598 9013727 -175274935 + MIR SINE MIR 33 184 -78 1565 180 109 3 chr4 9013765 9014131 -175274531 + MLT2C2 LTR ERVL 5 409 -55 180 0 0 0 chr4 9014178 9014198 -175274464 + (CA)n Simple_repeat Simple_repeat 1 20 0 2176 108 0 0 chr4 9015098 9015393 -175273269 + AluSx SINE Alu 1 295 -17 1431 115 161 31 chr4 9015407 9015667 -175272995 - AluJo SINE Alu -18 294 1 188 345 138 29 chr4 9016039 9016213 -175272449 + L2 LINE L2 3031 3223 -49 361 315 12 43 chr4 9016610 9016772 -175271890 - L1M4 LINE L1 -2170 3976 3820 2220 89 23 3 chr4 9016794 9017097 -175271565 - AluSx SINE Alu -3 309 1 269 346 24 39 chr4 9017165 9017292 -175271370 - MIR SINE MIR -72 190 66 315 288 79 28 chr4 9018522 9018699 -175269963 + L2 LINE L2 1621 1806 -1508 359 276 0 29 chr4 9018725 9018830 -175269832 - L2 LINE L2 -345 2968 2867 431 344 58 0 chr4 9018910 9019064 -175269598 + HAL1 LINE L1 1470 1632 -875 263 351 192 0 chr4 9019583 9019734 -175268928 - MIR3 SINE MIR -13 195 16 2331 92 0 0 chr4 9019988 9020293 -175268369 - AluY SINE Alu -6 305 1 214 370 71 61 chr4 9020297 9020608 -175268054 + L2 LINE L2 2959 3272 0 2778 22 0 0 chr4 9020952 9021270 -175267392 + AluYb8 SINE Alu 1 318 0 234 206 103 0 chr4 9021399 9021467 -175267195 + MIR SINE MIR 122 196 -66 366 218 0 30 chr4 9022005 9022106 -175266556 - MER94 DNA DNA -21 113 16 194 299 133 52 chr4 9022306 9022651 -175266011 + L2 LINE L2 2808 3180 -133 250 315 43 11 chr4 9022662 9022733 -175265929 - MIR SINE MIR -5 257 181 870 168 0 0 chr4 9022733 9022864 -175265798 - FLAM_C SINE Alu -2 131 1 250 315 43 11 chr4 9022864 9022884 -175265778 - MIR SINE MIR -81 181 163 24 0 0 0 chr4 9025015 9025039 -175263623 + GC_rich Low_complexity Low_complexity 1 24 0 214 289 0 0 chr4 9025353 9025405 -175263257 + (CG)n Simple_repeat Simple_repeat 2 53 0 1332 90 57 5 chr4 9025563 9025775 -175262887 - pTR5 LTR ERV1 -2044 394 172 279 250 31 0 chr4 9025778 9025874 -175262788 - LTR30 LTR ERV1 -80 642 544 3681 148 58 44 chr4 9025874 9026771 -175261891 - pTR5 LTR ERV1 -413 2025 743 1686 139 19 38 chr4 9026797 9027113 -175261549 + AluJb SINE Alu 1 310 -2 194 278 165 0 chr4 9027313 9027410 -175261252 + L2 LINE L2 3100 3212 -60 335 331 52 13 chr4 9027441 9027595 -175261067 + L2 LINE L2 3147 3306 -7 688 178 94 42 chr4 9027690 9027866 -175260796 - MLT1E2 LTR MaLR -266 360 172 2047 193 8 3 chr4 9027866 9028229 -175260433 + MLT1A1 LTR MaLR 1 365 0 688 178 94 42 chr4 9028229 9028243 -175260419 - MLT1E2 LTR MaLR -454 172 160 507 178 0 37 chr4 9028836 9028943 -175259719 + MER58C DNA MER1_type 113 215 0 265 299 74 60 chr4 9029346 9029697 -175258965 + MLT1H LTR MaLR 107 546 -3 1915 139 10 10 chr4 9029939 9030234 -175258428 - AluJb SINE Alu -17 295 1 499 221 170 12 chr4 9030880 9031140 -175257522 + MLT1G1 LTR MaLR 5 270 -285 2142 87 0 0 chr4 9031162 9031437 -175257225 + AluSq SINE Alu 30 304 -9 1440 161 114 0 chr4 9031576 9031875 -175256787 - MLT1A1 LTR MaLR -14 351 19 2539 51 3 0 chr4 9032144 9032455 -175256207 + AluSp SINE Alu 1 312 -1 2413 45 0 0 chr4 9032501 9032791 -175255871 + AluY SINE Alu 12 301 -10 2427 32 0 3 chr4 9033369 9033654 -175255008 + AluY SINE Alu 14 297 -14 377 299 14 0 chr4 9033705 9034004 -175254658 + (TG)n Simple_repeat Simple_repeat 1 303 0 259 352 0 22 chr4 9033935 9034117 -175254545 + (TATG)n Simple_repeat Simple_repeat 1 178 0 * 526 299 0 3 chr4 9034075 9034448 -175254214 + (TG)n Simple_repeat Simple_repeat 1 371 0 2438 53 0 0 chr4 9034628 9034927 -175253735 - AluY SINE Alu -11 300 2 365 244 91 21 chr4 9035531 9035737 -175252925 + LTR16A LTR ERVL 3 254 -196 989 275 131 31 chr4 9035746 9036234 -175252428 - MLT1F LTR MaLR -5 537 1 271 267 61 38 chr4 9036238 9036369 -175252293 + LTR16A1 LTR ERVL 265 398 -59 465 215 82 38 chr4 9036450 9036608 -175252054 - MIR SINE MIR -59 203 39 260 303 148 43 chr4 9036672 9036834 -175251828 + L2 LINE L2 3133 3311 -2 1893 144 3 19 chr4 9037222 9037534 -175251128 - AluJb SINE Alu -5 307 1 545 172 15 15 chr4 9038197 9038331 -175250331 + CT-rich Low_complexity Low_complexity 2 135 0 1656 176 12 56 chr4 9038334 9038658 -175250004 - AluJb SINE Alu 0 312 3 765 197 8 0 chr4 9038684 9038816 -175249846 - FLAM_A SINE Alu 0 133 1 2119 184 38 25 chr4 9038963 9039058 -175249604 + L1MB7 LINE L1 5734 5826 -358 2084 120 10 0 chr4 9039058 9039367 -175249295 + AluSx SINE Alu 1 312 0 2119 184 38 25 chr4 9039367 9039499 -175249163 + L1MB7 LINE L1 5826 5955 -229 2451 58 0 13 chr4 9039499 9039810 -175248852 + AluY SINE Alu 1 307 -4 2119 184 38 25 chr4 9039810 9040026 -175248636 + L1MB7 LINE L1 5955 6184 0 1779 146 0 7 chr4 9040035 9040309 -175248353 + AluSx SINE Alu 1 272 -40 2464 46 0 20 chr4 9040311 9040617 -175248045 - AluY SINE Alu -11 300 1 208 123 15 46 chr4 9040631 9040696 -175247966 + A-rich Low_complexity Low_complexity 3 65 0 280 270 135 0 chr4 9040886 9040997 -175247665 - LTR16C LTR ERVL -282 209 84 235 349 0 8 chr4 9042019 9042145 -175246517 + CT-rich Low_complexity Low_complexity 1 125 0 237 310 0 14 chr4 9042579 9042650 -175246012 - MIR SINE MIR -122 140 71 180 280 93 40 chr4 9042933 9043008 -175245654 - L2 LINE L2 -1 3312 3234 192 265 235 0 chr4 9043477 9043575 -175245087 - MIR SINE MIR -68 140 20 2408 65 0 0 chr4 9043609 9043903 -175244759 - AluY SINE Alu -17 294 1 272 255 78 10 chr4 9043988 9044090 -175244572 - MIR SINE MIR -40 222 114 422 255 4 4 chr4 9045122 9045242 -175243420 - MIR SINE MIR -88 120 1 419 258 0 94 chr4 9045272 9045431 -175243231 + MIR SINE MIR 20 163 -99 283 323 71 0 chr4 9045427 9045526 -175243136 - L2 LINE L2 -3 3310 3205 * 213 150 33 33 chr4 9045679 9045739 -175242923 + (CAGGG)n Simple_repeat Simple_repeat 1 60 0 306 260 17 81 chr4 9046029 9046202 -175242460 - L1ME4a LINE L1 -1 6120 5959 341 206 8 145 chr4 9046300 9046431 -175242231 - L1ME4a LINE L1 -1 6120 6008 296 322 147 24 chr4 9046492 9046703 -175241959 + MIR SINE MIR 8 244 -18 550 208 88 0 chr4 9046782 9046907 -175241755 - MIR SINE MIR -25 237 102 1646 186 124 30 chr4 9046908 9047017 -175241645 + L1MB5 LINE L1 5699 5796 -378 1571 143 75 11 chr4 9047017 9047296 -175241366 + AluJb SINE Alu 1 297 -15 1646 186 124 30 chr4 9047296 9047621 -175241041 + L1MB5 LINE L1 5796 6174 0 198 273 26 39 chr4 9048139 9048216 -175240446 + MIR SINE MIR 109 184 -78 321 304 75 50 chr4 9048463 9048624 -175240038 + L1ME4a LINE L1 5946 6110 -11 249 335 152 11 chr4 9048714 9048905 -175239757 + L2 LINE L2 3027 3244 -28 200 333 61 26 chr4 9048912 9049026 -175239636 - MIR3 SINE MIR -76 132 15 261 230 2 45 chr4 9049397 9049473 -175239189 - MIR SINE MIR -63 145 82 216 235 12 74 chr4 9049708 9049789 -175238873 + MIR SINE MIR 172 247 -15 2016 88 0 4 chr4 9050253 9050513 -175238149 - AluSq SINE Alu -54 259 1 2124 125 0 0 chr4 9050516 9050813 -175237849 - AluSx SINE Alu -15 297 1 1028 150 0 0 chr4 9051143 9051303 -175237359 + AluSg/x SINE Alu 144 303 -6 2400 69 3 0 chr4 9051429 9051733 -175236929 + AluY SINE Alu 1 305 -6 2474 85 16 6 chr4 9051753 9052119 -175236543 + THE1C LTR MaLR 1 370 -5 2013 187 3 42 chr4 9052236 9052616 -175236046 - MLT1A1 LTR MaLR 0 365 1 2237 94 0 7 chr4 9052951 9053249 -175235413 - AluSq SINE Alu -17 296 1 1913 133 26 0 chr4 9053265 9053567 -175235095 - AluSx SINE Alu -2 310 1 1352 142 104 4 chr4 9054264 9054504 -175234158 - AluJo SINE Alu -12 300 37 378 258 99 88 chr4 9054531 9054814 -175233848 - L1MC5 LINE L1 -37 7924 7639 1775 138 7 10 chr4 9055330 9055626 -175233036 - AluJb SINE Alu -4 308 14 296 240 91 50 chr4 9055982 9056103 -175232559 - MIR SINE MIR -117 145 20 227 318 15 0 chr4 9056748 9056814 -175231848 + L2 LINE L2 3242 3308 -5 2133 153 59 50 chr4 9056973 9057204 -175231458 + MSTA LTR MaLR 1 239 -189 2249 96 0 0 chr4 9057204 9057496 -175231166 + AluSp SINE Alu 1 292 -21 2133 153 59 50 chr4 9057496 9057688 -175230974 + MSTA LTR MaLR 239 428 0 2415 93 101 25 chr4 9057996 9058394 -175230268 - MSTA LTR MaLR 0 428 1 2662 140 56 22 chr4 9060749 9060884 -175227778 + MER4C LTR ERV1 1 130 -335 1441 138 109 4 chr4 9060884 9061159 -175227503 + AluJb SINE Alu 1 304 -8 2662 140 56 22 chr4 9061159 9061473 -175227189 + MER4C LTR ERV1 130 465 0 367 301 48 14 chr4 9061481 9061627 -175227035 - MIR SINE MIR -56 206 56 2133 87 7 3 chr4 9061654 9061943 -175226719 - AluSx SINE Alu -20 292 3 596 231 162 23 chr4 9061990 9062206 -175226456 + MIR SINE MIR 13 258 -4 379 199 202 17 chr4 9062594 9062729 -175225933 + AluSq SINE Alu 107 255 -48 1338 168 75 4 chr4 9062792 9063060 -175225602 + AluJo SINE Alu 2 288 -24 7305 129 38 26 chr4 9063062 9063271 -175225391 + HSMAR2 DNA Mariner 45 250 -1052 2225 96 0 10 chr4 9063271 9063573 -175225089 - AluSc SINE Alu -10 299 1 7305 129 38 26 chr4 9063573 9064606 -175224056 + HSMAR2 DNA Mariner 250 1301 -1 231 204 0 0 chr4 9066035 9066089 -175222573 + (CA)n Simple_repeat Simple_repeat 2 55 0 268 236 97 0 chr4 9068174 9068246 -175220416 - L2 LINE L2 -1 3312 3234 610 302 14 51 chr4 9069282 9069497 -175219165 + MIR SINE MIR 1 207 -55 308 347 75 17 chr4 9069495 9069789 -175218873 - L2 LINE L2 -618 2696 2386 * 251 0 0 0 chr4 9069907 9069935 -175218727 + MLT2A2 LTR ERVL 4 31 -422 2530 65 32 9 chr4 9069937 9070275 -175218387 + HERVL LTR ERVL 5113 5458 -196 420 67 0 0 chr4 9070275 9070335 -175218327 + (TATG)n Simple_repeat Simple_repeat 1 60 0 1810 104 0 0 chr4 9070335 9070575 -175218087 - AluSx SINE Alu -33 279 40 402 276 111 50 chr4 9073952 9074133 -175214529 + MIR SINE MIR 20 211 -51 986 213 43 14 chr4 9074136 9074343 -175214319 + MIR SINE MIR 7 219 -43 1141 211 72 7 chr4 9074860 9075164 -175213498 - MER33 DNA MER1_type 0 324 1 1966 128 40 0 chr4 9075415 9075711 -175212951 - AluSx SINE Alu -4 308 1 198 273 18 0 chr4 9075732 9075787 -175212875 + MIR SINE MIR 159 214 -48 189 183 183 14 chr4 9075786 9075857 -175212805 - L3 LINE CR1 -880 697 615 * 186 294 272 11 chr4 9075829 9075921 -175212741 + L2 LINE L2 3149 3264 -8 * 3496 36 11 27 chr4 9078475 9078916 -175209746 + MLT2A1 LTR ERVL 11 444 0 199 299 0 30 chr4 9079001 9079068 -175209594 - L2 LINE L2 -76 3196 3132 414 236 149 43 chr4 9080321 9080482 -175208180 - MER5B DNA MER1_type 0 178 1 529 335 62 0 chr4 9080938 9081132 -175207530 + MIR SINE MIR 27 232 -30 276 240 250 42 chr4 9081549 9081741 -175206921 - MIR SINE MIR -29 233 2 268 290 20 10 chr4 9081871 9081971 -175206691 + L2 LINE L2 2787 2887 -427 222 262 98 0 chr4 9082105 9082166 -175206496 + L2 LINE L2 3209 3275 -38 213 258 86 43 chr4 9082246 9082339 -175206323 + MIR SINE MIR 85 181 -81 320 261 118 25 chr4 9083085 9083204 -175205458 + MIR3 SINE MIR 47 176 -32 341 333 40 0 chr4 9084462 9084588 -175204074 + L2 LINE L2 3133 3263 -9 1873 158 0 3 chr4 9084893 9085203 -175203459 - AluJb SINE Alu -3 309 1 2130 114 3 0 chr4 9085536 9085833 -175202829 - AluSx SINE Alu -14 298 1 293 293 132 9 chr4 9087252 9087358 -175201304 + L2 LINE L2 3153 3271 -1 181 213 40 67 chr4 9087455 9087530 -175201132 + L2 LINE L2 3162 3234 -79 510 318 95 37 chr4 9087758 9088085 -175200577 + L2 LINE L2 2967 3312 -1 204 269 141 0 chr4 9088496 9088574 -175200088 + MIR SINE MIR 84 172 -90 230 277 256 15 chr4 9088978 9089115 -175199547 + L2 LINE L2 2926 3095 -177 267 253 0 25 chr4 9089169 9089248 -175199414 + L1ME LINE L1 5743 5819 -302 277 336 118 8 chr4 9089489 9089608 -175199054 + L2 LINE L2 3133 3264 -8 2299 90 0 3 chr4 9090753 9091063 -175197599 + AluSx SINE Alu 1 309 -3 2271 99 3 0 chr4 9091594 9091897 -175196765 - AluSx SINE Alu -8 304 1 2436 62 3 0 chr4 9093462 9093771 -175194891 + AluY SINE Alu 1 310 -1 253 269 90 27 chr4 9094475 9094698 -175193964 - L1ME4a LINE L1 -23 6098 5862 757 158 267 0 chr4 9094723 9094888 -175193774 - MER3 DNA MER1_type 0 209 1 318 192 96 0 chr4 9095277 9095350 -175193312 - MLT1I LTR MaLR -7 402 323 225 0 0 0 chr4 9095350 9095375 -175193287 + (A)n Simple_repeat Simple_repeat 1 25 0 1785 159 0 7 chr4 9095378 9095679 -175192983 + AluJb SINE Alu 1 299 -13 279 140 70 18 chr4 9095680 9095737 -175192925 - L1MA4A LINE L1 -36 6267 6208 6560 166 8 26 chr4 9095739 9097559 -175191103 - L1MA4A LINE L1 -391 5912 4125 674 291 42 42 chr4 9097559 9097820 -175190842 - MLT1I LTR MaLR -70 339 79 181 368 11 23 chr4 9098446 9098533 -175190129 - L2 LINE L2 0 3272 3187 2045 122 20 0 chr4 9099037 9099331 -175189331 - AluSx SINE Alu -12 300 1 592 266 0 0 chr4 9099924 9100038 -175188624 + FLAM_A SINE Alu 1 117 -185 492 62 0 0 chr4 9100038 9100102 -175188560 + (TAGA)n Simple_repeat Simple_repeat 1 64 0 592 266 0 0 chr4 9100102 9100115 -175188547 + FLAM_A SINE Alu 116 128 -174 2292 82 0 13 chr4 9100356 9100662 -175188000 - AluY SINE Alu -1 310 9 325 193 44 104 chr4 9101115 9101250 -175187412 + L1M3c LINE L1 1191 1317 -4824 346 180 120 60 chr4 9102069 9102169 -175186493 + MER103 DNA DNA 15 120 -46 180 0 0 0 chr4 9102173 9102193 -175186469 + (TTCA)n Simple_repeat Simple_repeat 3 22 0 216 0 0 0 chr4 9103894 9103918 -175184744 + (TA)n Simple_repeat Simple_repeat 2 25 0 1277 197 0 86 chr4 9103931 9104246 -175184416 - AluJo SINE Alu -13 289 2 571 243 223 59 chr4 9104747 9105084 -175183578 + LTR16A LTR ERVL 59 450 0 1519 176 59 3 chr4 9105427 9105716 -175182946 - AluJo SINE Alu -7 305 1 971 155 67 21 chr4 9105805 9105999 -175182663 - MER3 DNA MER1_type 0 209 7 2125 111 3 0 chr4 9106425 9106723 -175181939 - AluSx SINE Alu -13 299 1 2056 102 0 0 chr4 9106794 9107099 -175181563 + AluSx SINE Alu 30 334 0 2153 96 0 0 chr4 9107135 9107438 -175181224 + AluSc SINE Alu 6 308 -1 1903 207 16 58 chr4 9107703 9108190 -175180472 + MLT1C LTR MaLR 1 467 0 1629 166 10 3 chr4 9108271 9108560 -175180102 + AluJo SINE Alu 1 291 -21 2200 68 44 0 chr4 9109037 9109333 -175179329 - AluYa5 SINE Alu -2 309 1 1908 129 13 20 chr4 9109333 9109635 -175179027 - AluJo SINE Alu -12 300 1 2050 137 0 0 chr4 9110581 9110881 -175177781 + AluSx SINE Alu 1 300 -12 641 267 165 43 chr4 9111049 9111178 -175177484 + L2 LINE L2 2028 2140 -1173 1121 161 79 57 chr4 9111178 9111232 -175177430 - MER33 DNA MER1_type -2261 324 273 1332 229 14 0 chr4 9111232 9111524 -175177138 + AluJo SINE Alu 1 296 -16 1121 161 79 57 chr4 9111524 9111751 -175176911 - MER33 DNA MER1_type -2312 273 32 2101 95 0 7 chr4 9111751 9112056 -175176606 + AluY SINE Alu 1 303 0 1121 161 79 57 chr4 9112056 9112088 -175176574 - MER33 DNA MER1_type -2553 32 2 641 267 165 43 chr4 9112088 9112647 -175176015 + L2 LINE L2 2140 3191 -122 945 273 86 19 chr4 9112682 9113096 -175175566 + LTR16B LTR ERVL 11 438 -26 209 265 0 0 chr4 9113096 9113145 -175175517 + L2 LINE L2 3265 3313 0 463 337 28 29 chr4 9113150 9113402 -175175260 + MIR SINE MIR 3 256 -6 200 98 0 49 chr4 9113926 9113967 -175174695 + (TTAA)n Simple_repeat Simple_repeat 1 39 0 514 207 140 61 chr4 9114062 9114137 -175174525 - MER45A DNA AcHobo -1404 177 109 2307 76 13 3 chr4 9114137 9114441 -175174221 + AluY SINE Alu 1 307 -4 514 207 140 61 chr4 9114441 9114529 -175174133 - MER45A DNA AcHobo -1472 109 1 342 240 116 29 chr4 9114759 9114906 -175173756 + L1ME LINE L1 5660 5819 -302 2338 112 45 25 chr4 9114946 9115303 -175173359 - THE1B LTR MaLR 0 364 1 1994 148 0 10 chr4 9115496 9115807 -175172855 + AluJb SINE Alu 3 310 -2 2050 112 10 3 chr4 9115904 9116207 -175172455 + AluSx SINE Alu 1 305 -7 1725 148 41 7 chr4 9116439 9116730 -175171932 + AluJb SINE Alu 2 302 -10 35 0 0 0 chr4 9116734 9116769 -175171893 + AT_rich Low_complexity Low_complexity 1 35 0 1983 125 7 7 chr4 9117081 9117376 -175171286 - AluJb SINE Alu -17 295 1 2067 116 3 3 chr4 9117551 9117852 -175170810 + AluSg SINE Alu 1 301 -9 2311 80 0 3 chr4 9117852 9118164 -175170498 + AluY SINE Alu 1 311 0 315 274 60 0 chr4 9118289 9118373 -175170289 - MIR SINE MIR -2 260 172 1414 180 74 0 chr4 9118805 9119089 -175169573 + AluJb SINE Alu 1 305 -7 2318 73 7 0 chr4 9119921 9120222 -175168440 - AluSc SINE Alu -6 303 1 1773 136 7 27 chr4 9120521 9120816 -175167846 + AluJo SINE Alu 7 295 -17 27 29 0 0 chr4 9120845 9120879 -175167783 + AT_rich Low_complexity Low_complexity 1 34 0 360 346 104 37 chr4 9120937 9121521 -175167141 - L2 LINE L2 -17 3255 2626 288 350 36 0 chr4 9121601 9121738 -175166924 - MIR SINE MIR -57 205 64 2078 77 20 13 chr4 9121886 9122185 -175166477 + AluY SINE Alu 1 301 -10 1003 192 0 16 chr4 9123446 9123628 -175165034 - MLT1B LTR MaLR 0 390 212 2016 110 7 0 chr4 9123637 9123928 -175164734 - AluSx SINE Alu -19 293 1 592 136 31 117 chr4 9123929 9124091 -175164571 - L1MB5 LINE L1 -345 5829 5682 360 295 67 35 chr4 9124091 9124345 -175164317 - L1M4 LINE L1 -981 5165 4904 1924 86 61 4 chr4 9124367 9124647 -175164015 - AluSc SINE Alu -6 303 8 386 299 82 25 chr4 9124671 9124915 -175163747 - L1M4 LINE L1 -1248 4898 4641 1243 178 5 0 chr4 9124943 9125156 -175163506 - AluJb SINE Alu -98 214 1 1834 162 0 10 chr4 9125166 9125474 -175163188 - AluJo SINE Alu -7 305 1 21 0 0 0 chr4 9125660 9125681 -175162981 + AT_rich Low_complexity Low_complexity 1 21 0 1515 199 156 13 chr4 9125709 9126107 -175162555 + MLT1C LTR MaLR 6 460 -7 330 283 87 60 chr4 9126125 9126309 -175162353 - L1M4 LINE L1 -1744 4402 4214 2367 130 77 70 chr4 9126320 9126547 -175162115 - MER66B LTR ERV1 0 486 262 2072 117 3 7 chr4 9126547 9126845 -175161817 + AluSx SINE Alu 2 298 -14 1997 123 3 7 chr4 9126847 9127149 -175161513 + AluSg SINE Alu 3 303 -7 2367 130 77 70 chr4 9127149 9127401 -175161261 - MER66B LTR ERV1 -224 262 1 527 211 83 0 chr4 9127469 9127578 -175161084 + MLT1F1 LTR MaLR 13 130 -437 1540 153 11 28 chr4 9127905 9128187 -175160475 + AluJb SINE Alu 36 312 0 2442 65 0 0 chr4 9128200 9128506 -175160156 + AluY SINE Alu 1 306 -5 284 202 35 123 chr4 9128882 9128996 -175159666 + LTR16B LTR ERVL 19 122 -342 207 352 101 48 chr4 9129179 9129617 -175159045 + L2 LINE L2 361 821 -2493 230 258 212 61 chr4 9129629 9129761 -175158901 + MIR SINE MIR 101 252 -10 261 333 157 12 chr4 9129864 9130113 -175158549 + L2 LINE L2 844 1128 -2186 186 357 88 39 chr4 9130124 9130407 -175158255 - L2 LINE L2 -2861 453 157 2425 67 100 0 chr4 9130428 9130769 -175157893 - THE1C LTR MaLR 0 375 1 1226 255 101 13 chr4 9131129 9131505 -175157157 - MLT1I LTR MaLR 0 409 1 1744 130 0 4 chr4 9131558 9131848 -175156814 + AluSx SINE Alu 22 310 0 382 257 146 35 chr4 9132079 9132250 -175156412 + L1MC4a LINE L1 5754 5943 -1865 624 212 0 8 chr4 9132256 9132388 -175156274 + FLAM_C SINE Alu 1 131 -2 1122 159 50 50 chr4 9132416 9132674 -175155988 + AluJb SINE Alu 42 299 -13 547 151 162 12 chr4 9132822 9132951 -175155711 + L1MD3 LINE L1 7694 7870 -125 1226 262 78 27 chr4 9133235 9133647 -175155015 - LTR16A LTR ERVL -10 440 8 1842 132 20 0 chr4 9136356 9136659 -175152003 + AluSx SINE Alu 3 311 -1 2441 71 0 0 chr4 9136774 9137085 -175151577 - AluY SINE Alu 0 311 1 858 186 6 6 chr4 9137111 9137272 -175151390 - FRAM SINE Alu -5 161 1 1852 107 126 69 chr4 9137816 9138332 -175150330 + MER4A LTR ERV1 1 624 -40 13386 27 1 1 chr4 9138332 9140659 -175148003 - L1PA3 LINE L1 0 6155 3828 1852 107 126 69 chr4 9140659 9140703 -175147959 + MER4A LTR ERV1 624 664 0 4897 161 36 7 chr4 9140763 9141623 -175147039 + L1MC1 LINE L1 5429 6313 -20 558 226 77 70 chr4 9141807 9141847 -175146815 - L1M4 LINE L1 -2952 3194 3156 2001 132 7 0 chr4 9141847 9142143 -175146519 - AluSx SINE Alu -14 298 1 558 226 77 70 chr4 9142143 9142412 -175146250 - L1M4 LINE L1 -2990 3156 2879 2092 101 26 13 chr4 9142412 9142720 -175145942 + AluSq SINE Alu 1 312 -1 558 226 77 70 chr4 9142720 9142812 -175145850 - L1M4 LINE L1 -3267 2879 2789 2297 155 89 33 chr4 9143562 9143794 -175144868 + MER66B LTR ERV1 4 222 -264 2030 122 0 3 chr4 9143794 9144088 -175144574 + AluSx SINE Alu 1 293 -19 2297 155 89 33 chr4 9144088 9144306 -175144356 + MER66B LTR ERV1 222 479 -7 988 228 5 9 chr4 9144395 9144610 -175144052 + MLT1A2 LTR MaLR 1 214 -160 3637 121 6 0 chr4 9144610 9145115 -175143547 - LTR31 LTR ERV1 0 619 112 800 235 0 0 chr4 9145115 9145281 -175143381 + FRAM SINE Alu 1 166 -10 674 115 74 25 chr4 9145281 9145403 -175143259 - LTR31 LTR ERV1 -491 128 1 694 269 0 0 chr4 9145446 9145602 -175143060 + MLT1A2 LTR MaLR 215 370 -4 2383 73 0 13 chr4 9146133 9146447 -175142215 + AluY SINE Alu 1 310 -1 726 233 43 67 chr4 9146615 9146654 -175142008 - MLT1H1 LTR MaLR 0 555 517 1709 164 3 7 chr4 9146654 9146947 -175141715 - AluJb SINE Alu -20 292 1 726 233 43 67 chr4 9146947 9147160 -175141502 - MLT1H1 LTR MaLR -38 517 309 266 328 76 0 chr4 9147219 9147338 -175141324 - MLT1J LTR MaLR -383 128 1 23 0 0 0 chr4 9147480 9147503 -175141159 + AT_rich Low_complexity Low_complexity 1 23 0 532 131 9 9 chr4 9147771 9147878 -175140784 + (TTCCC)n Simple_repeat Simple_repeat 4 110 0 1836 152 16 10 chr4 9147880 9148190 -175140472 - AluJb SINE Alu 0 312 1 313 195 65 0 chr4 9148259 9148336 -175140326 - L1ME3A LINE L1 -220 5950 5869 293 19 74 0 chr4 9148338 9148392 -175140270 + (TCTA)n Simple_repeat Simple_repeat 3 60 0 916 276 59 55 chr4 9148409 9148468 -175140194 - L1ME3A LINE L1 -310 5860 5803 878 250 5 0 chr4 9148468 9148656 -175140006 - MER5A DNA MER1_type 0 189 1 916 276 59 55 chr4 9148656 9148793 -175139869 - L1ME3A LINE L1 -367 5803 5668 1833 117 0 87 chr4 9148793 9148969 -175139693 - AluSx SINE Alu -8 304 114 228 86 0 0 chr4 9148969 9149004 -175139658 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2391 46 0 0 chr4 9149004 9149288 -175139374 - AluY SINE Alu -27 284 1 1833 117 0 87 chr4 9149288 9149443 -175139219 - AluSx SINE Alu -196 116 1 916 276 59 55 chr4 9149443 9149734 -175138928 - L1ME3A LINE L1 -502 5668 5370 2330 64 3 3 chr4 9149872 9150167 -175138495 - AluSp SINE Alu -18 295 1 669 139 9 0 chr4 9150222 9150330 -175138332 + MLT1A1 LTR MaLR 1 109 -256 244 245 94 38 chr4 9150335 9150441 -175138221 - LTR38 LTR ERV1 0 556 445 1742 138 3 7 chr4 9150645 9150928 -175137734 - AluJb SINE Alu 0 312 31 996 184 16 5 chr4 9150997 9151187 -175137475 - AluJb SINE Alu -78 234 43 1160 172 40 9 chr4 9151389 9151587 -175137075 + MLT1A1 LTR MaLR 130 337 -28 1976 50 46 8 chr4 9151587 9151847 -175136815 - AluY SINE Alu -15 296 27 1160 172 40 9 chr4 9151847 9151875 -175136787 + MLT1A1 LTR MaLR 337 363 -2 207 0 0 0 chr4 9151883 9151906 -175136756 + (TG)n Simple_repeat Simple_repeat 2 24 0 2219 85 3 0 chr4 9151906 9152200 -175136462 - AluSp SINE Alu -18 295 1 906 134 8 0 chr4 9152200 9152334 -175136328 - AluSq/x SINE Alu -178 135 1 267 104 0 0 chr4 9152435 9152483 -175136179 + (A)n Simple_repeat Simple_repeat 1 48 0 1786 177 0 3 chr4 9152492 9152797 -175135865 + AluJo SINE Alu 8 311 -1 1701 179 10 0 chr4 9153040 9153337 -175135325 - AluJo SINE Alu -12 300 1 1789 109 58 20 chr4 9153344 9153637 -175135025 - AluSx SINE Alu -8 304 1 1988 128 10 0 chr4 9153977 9154273 -175134389 + AluSx SINE Alu 1 299 -13 2036 200 89 11 chr4 9154281 9154802 -175133860 - L1MB7 LINE L1 -19 6165 5601 183 42 0 0 chr4 9156015 9156039 -175132623 + (TCCC)n Simple_repeat Simple_repeat 1 24 0 200 365 31 0 chr4 9156039 9156135 -175132527 - L2 LINE L2 -1 3271 3173 243 346 98 0 chr4 9156896 9157049 -175131613 - MIR SINE MIR -36 226 59 199 292 46 46 chr4 9157660 9157725 -175130937 + MIR3 SINE MIR 111 175 -33 297 310 92 7 chr4 9158190 9158332 -175130330 - MIR SINE MIR -80 182 29 1608 175 3 30 chr4 9158442 9158563 -175130099 + AluSx SINE Alu 16 139 -173 2233 96 0 7 chr4 9158563 9158865 -175129797 + AluSp SINE Alu 1 300 -13 1608 175 3 30 chr4 9158865 9159040 -175129622 + AluSx SINE Alu 139 304 -8 2877 86 0 0 chr4 9159447 9159808 -175128854 + THE1B LTR MaLR 2 362 -2 373 252 89 0 chr4 9159812 9159935 -175128727 - MIR SINE MIR -91 171 38 388 185 33 0 chr4 9160039 9160131 -175128531 + MLT1I LTR MaLR 75 169 -240 337 284 35 0 chr4 9160216 9160332 -175128330 + MLT1I LTR MaLR 290 409 0 244 328 117 14 chr4 9160402 9160543 -175128119 - MIR SINE MIR -61 147 3 196 333 0 17 chr4 9160543 9160595 -175128067 + MER5B DNA MER1_type 76 126 -52 2140 122 0 0 chr4 9160609 9160905 -175127757 + AluSx SINE Alu 1 296 -16 1911 133 3 14 chr4 9160905 9161198 -175127464 - AluJo SINE Alu -22 290 1 884 168 0 31 chr4 9161434 9161595 -175127067 - AluJo SINE Alu -152 160 5 187 374 36 0 chr4 9161627 9161710 -175126952 - L2 LINE L2 -50 3222 3137 214 341 35 0 chr4 9161835 9161920 -175126742 + L2 LINE L2 3175 3262 -51 281 326 109 0 chr4 9162122 9162269 -175126393 + MIR3 SINE MIR 25 187 -21 254 302 71 8 chr4 9162691 9162817 -175125845 - MIR3 SINE MIR -10 198 65 725 132 36 18 chr4 9162832 9163057 -175125605 + CT-rich Low_complexity Low_complexity 1 229 0 318 233 0 0 chr4 9163059 9163119 -175125543 + C-rich Low_complexity Low_complexity 3 62 0 1569 171 59 14 chr4 9163119 9163406 -175125256 - AluJo SINE Alu -12 300 1 420 271 104 70 chr4 9163546 9163929 -175124733 + MLT1K LTR MaLR 185 580 -8 287 279 93 0 chr4 9164456 9164542 -175124120 + L2 LINE L2 3179 3272 0 1092 129 0 45 chr4 9164898 9165076 -175123586 - AluSg/x SINE Alu -9 301 132 474 229 76 0 chr4 9165211 9165329 -175123333 + MIR3 SINE MIR 58 184 -24 212 284 25 25 chr4 9165930 9166011 -175122651 + MIR SINE MIR 1 81 -181 344 260 199 22 chr4 9166034 9166215 -175122447 - MIR SINE MIR -37 225 13 2306 94 0 0 chr4 9166256 9166555 -175122107 + AluSx SINE Alu 1 299 -13 387 335 62 6 chr4 9168004 9168180 -175120482 - MIR SINE MIR -55 207 22 4405 161 48 18 chr4 9168513 9169208 -175119454 + L1MB7 LINE L1 5183 5916 -268 1840 149 20 10 chr4 9169208 9169487 -175119175 + AluJb SINE Alu 1 285 -27 189 0 0 0 chr4 9169487 9169508 -175119154 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 1840 149 20 10 chr4 9169508 9169523 -175119139 + AluJb SINE Alu 285 298 -14 4405 161 48 18 chr4 9169523 9169792 -175118870 + L1MB7 LINE L1 5916 6175 -9 242 221 15 29 chr4 9170523 9170591 -175118071 + CT-rich Low_complexity Low_complexity 3 69 0 641 235 6 0 chr4 9170779 9170958 -175117704 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 233 256 0 0 chr4 9170962 9171005 -175117657 + (TGGG)n Simple_repeat Simple_repeat 2 44 0 190 286 0 0 chr4 9171007 9171056 -175117606 + MIR3 SINE MIR 139 187 -21 220 266 49 152 chr4 9171770 9171954 -175116708 - L3 LINE CR1 -236 1341 1177 195 311 73 0 chr4 9172488 9172639 -175116023 + L2 LINE L2 2812 2973 -299 590 279 29 17 chr4 9172962 9173134 -175115528 + L2 LINE L2 3136 3309 -4 205 313 31 0 chr4 9173353 9173417 -175115245 + L2 LINE L2 3207 3272 0 1912 161 0 19 chr4 9173737 9174048 -175114614 + AluJb SINE Alu 1 305 -7 1618 204 64 3 chr4 9174138 9174482 -175114180 + MLT1A1 LTR MaLR 1 365 0 439 214 0 31 chr4 9174901 9174999 -175113663 + MER21B LTR ERV1 1 95 -768 732 272 60 44 chr4 9175039 9175192 -175113470 + MER21B LTR ERV1 98 247 -616 2040 117 17 3 chr4 9175192 9175491 -175113171 - AluSq SINE Alu -10 303 1 732 272 60 44 chr4 9175491 9175812 -175112850 + MER21B LTR ERV1 247 785 -78 277 258 45 0 chr4 9175812 9175878 -175112784 + MIR SINE MIR 104 172 -90 350 171 29 0 chr4 9176383 9176453 -175112209 - MIR SINE MIR -118 144 73 189 313 40 30 chr4 9176612 9176711 -175111951 + L2 LINE L2 2873 2972 -341 2487 43 3 7 chr4 9177029 9177332 -175111330 - AluY SINE Alu -9 302 1 1597 145 3 35 chr4 9177338 9177621 -175111041 + AluJo SINE Alu 32 305 -7 248 242 264 22 chr4 9177693 9177784 -175110878 - MER81 DNA DNA -1 113 1 536 291 101 5 chr4 9177937 9178136 -175110526 + MIR SINE MIR 45 262 0 256 299 11 20 chr4 9178159 9178282 -175110380 - MIR SINE MIR -56 152 29 255 226 0 0 chr4 9178646 9178699 -175109963 - MIR SINE MIR -119 143 91 260 363 112 28 chr4 9178950 9179129 -175109533 - MIR SINE MIR -25 237 44 1557 208 103 3 chr4 9180966 9181326 -175107336 + MSTD LTR MaLR 1 396 0 237 300 187 27 chr4 9181326 9181476 -175107186 - MIR SINE MIR -14 248 75 228 282 190 14 chr4 9181590 9181732 -175106930 - L2 LINE L2 -188 3084 2918 1707 85 51 0 chr4 9182317 9182552 -175106110 - AluSq SINE Alu -66 247 1 35 41 0 0 chr4 9182597 9182646 -175106016 + AT_rich Low_complexity Low_complexity 1 49 0 717 289 32 56 chr4 9182707 9182956 -175105706 + MIR SINE MIR 16 258 -4 252 242 242 25 chr4 9182966 9183123 -175105539 - MIR SINE MIR -28 234 44 192 282 117 29 chr4 9183567 9183670 -175104992 + MIR SINE MIR 20 131 -131 996 180 0 14 chr4 9183762 9183973 -175104689 + MER96B DNA MER1_type? 4 211 -206 1620 147 56 0 chr4 9184100 9184366 -175104296 - AluJo SINE Alu -21 291 11 247 233 23 23 chr4 9184415 9184501 -175104161 + MIR SINE MIR 170 255 -7 187 262 16 16 chr4 9184572 9184633 -175104029 - MIR SINE MIR -171 91 31 561 292 70 11 chr4 9184680 9184865 -175103797 + MIR SINE MIR 46 241 -21 807 243 111 10 chr4 9185172 9185460 -175103202 + LTR53 LTR ERVL 196 512 -7 1954 152 10 0 chr4 9185549 9185846 -175102816 - AluSx SINE Alu -12 300 1 225 0 0 0 chr4 9186304 9186329 -175102333 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 1894 119 0 48 chr4 9186329 9186623 -175102039 - AluSx SINE Alu -32 280 1 1651 162 45 10 chr4 9186625 9186915 -175101747 - AluJo SINE Alu -12 300 1 561 274 12 12 chr4 9186944 9187126 -175101536 + MIR SINE MIR 2 184 -56 2077 127 3 7 chr4 9187172 9187479 -175101183 + AluSq SINE Alu 1 306 -7 255 314 25 17 chr4 9187850 9187968 -175100694 - L3 LINE CR1 -37 1540 1422 1922 110 45 0 chr4 9187980 9188270 -175100392 - AluSx SINE Alu -5 307 5 1423 177 3 79 chr4 9188272 9188600 -175100062 + MLT1B LTR MaLR 80 382 -8 2117 118 0 16 chr4 9188653 9188968 -175099694 + AluSx SINE Alu 1 310 -2 205 191 0 0 chr4 9188981 9189023 -175099639 + A-rich Low_complexity Low_complexity 1 42 0 1734 199 36 3 chr4 9189880 9190216 -175098446 - L1MB3 LINE L1 -3 6180 5834 1965 123 0 39 chr4 9190363 9190672 -175097990 + AluJo SINE Alu 12 308 -4 1085 238 199 24 chr4 9190672 9191139 -175097523 + MLT1F1 LTR MaLR 19 567 0 213 360 48 20 chr4 9191254 9191401 -175097261 - MIR SINE MIR -32 230 80 240 316 0 13 chr4 9191857 9191933 -175096729 + MLT1L LTR MaLR 120 194 -421 802 218 12 1 chr4 9191960 9192285 -175096377 + MER93b LTR ERV1 1 365 -8 277 250 52 86 chr4 9192314 9192430 -175096232 + MLT1L LTR MaLR 236 392 -164 2303 207 105 18 chr4 9192501 9193168 -175095494 + MER50 LTR ERV1 10 734 0 543 246 5 64 chr4 9193229 9193416 -175095246 + MLT1J LTR MaLR 3 178 -333 629 236 65 91 chr4 9193416 9193814 -175094848 + MLT1J2 LTR MaLR 63 450 0 319 119 34 0 chr4 9193966 9194025 -175094637 + FLAM_A SINE Alu 64 124 -9 2013 124 0 3 chr4 9194073 9194394 -175094268 + AluSx SINE Alu 1 320 0 421 307 67 32 chr4 9195258 9195447 -175093215 + MIR SINE MIR 20 219 -43 214 315 99 43 chr4 9195497 9195659 -175093003 + MIR SINE MIR 48 218 -44 310 304 105 49 chr4 9196685 9196892 -175091770 + MIR3 SINE MIR 12 221 -41 429 226 0 32 chr4 9196944 9197130 -175091532 + (ATGGTG)n Simple_repeat Simple_repeat 1 180 0 * 699 164 0 48 chr4 9197128 9197317 -175091345 + (TGG)n Simple_repeat Simple_repeat 1 180 0 1163 87 0 22 chr4 9197333 9197517 -175091145 + (TGG)n Simple_repeat Simple_repeat 1 180 0 1251 116 0 0 chr4 9197529 9197761 -175090901 + (TGG)n Simple_repeat Simple_repeat 1 232 0 802 281 54 4 chr4 9197804 9198046 -175090616 - MIR SINE MIR -6 256 3 219 337 31 31 chr4 9198441 9198539 -175090123 + L2 LINE L2 3203 3300 -13 260 270 36 22 chr4 9198559 9198696 -175089966 - L1MC4 LINE L1 -1 8041 7903 539 225 9 9 chr4 9198797 9198908 -175089754 - L2 LINE L2 -2 3311 3201 330 261 61 17 chr4 9199050 9199165 -175089497 + MIR SINE MIR 33 152 -110 324 203 158 40 chr4 9199622 9199799 -175088863 - MER102a DNA MER1_type -25 305 108 341 243 180 9 chr4 9200712 9200823 -175087839 + MIR3 SINE MIR 14 143 -65 262 243 14 48 chr4 9200841 9200924 -175087738 - MIR SINE MIR -59 149 69 322 298 0 66 chr4 9201143 9201264 -175087398 - MIR3 SINE MIR -54 154 42 28 29 0 0 chr4 9201551 9201586 -175087076 + GC_rich Low_complexity Low_complexity 1 35 0 1755 155 3 7 chr4 9202056 9202352 -175086310 - AluJb SINE Alu -17 295 1 290 279 70 0 chr4 9202354 9202440 -175086222 - MIR SINE MIR -112 150 59 204 200 20 0 chr4 9202453 9202503 -175086159 + MIR SINE MIR 74 124 -138 813 258 163 18 chr4 9202919 9203256 -175085406 + MLT1J2 LTR MaLR 20 405 -45 786 205 83 122 chr4 9203281 9203350 -175085312 + MLT1G LTR MaLR 3 73 -522 5725 104 47 16 chr4 9203350 9204225 -175084437 - MER4D LTR ERV1 -1 902 1 786 205 83 122 chr4 9204225 9204298 -175084364 + MLT1G LTR MaLR 73 147 -448 1433 206 0 44 chr4 9204298 9204619 -175084043 - AluJo SINE Alu -1 311 5 667 175 108 0 chr4 9204626 9204746 -175083916 - FLAM_C SINE Alu 0 133 1 786 205 83 122 chr4 9204746 9204946 -175083716 + MLT1G LTR MaLR 153 309 -286 1105 367 43 11 chr4 9205088 9205885 -175082777 - HERV16 LTR ERVL -395 5369 4509 951 224 76 27 chr4 9205890 9206193 -175082469 + MLT1F LTR MaLR 199 497 -45 935 275 42 0 chr4 9206195 9206435 -175082227 - HERV16 LTR ERVL -3060 1936 1687 903 110 24 12 chr4 9206508 9206672 -175081990 + CT-rich Low_complexity Low_complexity 1 166 0 588 136 32 26 chr4 9206711 9206865 -175081797 + CT-rich Low_complexity Low_complexity 1 155 0 1958 124 16 22 chr4 9206865 9207356 -175081306 - AluSq SINE Alu 0 313 1 507 319 165 19 chr4 9207361 9207725 -175080937 - HERV16 LTR ERVL -3456 1540 1124 1206 225 62 37 chr4 9207799 9208245 -175080417 - MLT1B LTR MaLR 0 390 1 800 320 57 30 chr4 9208286 9208724 -175079938 - HERV16 LTR ERVL -4077 919 470 2198 98 0 3 chr4 9208754 9209049 -175079613 - AluSq SINE Alu -7 306 13 402 75 0 0 chr4 9209061 9209114 -175079548 - MSTB LTR MaLR -373 53 1 1582 254 67 22 chr4 9209157 9209750 -175078912 - L2 LINE L2 -231 3082 2458 235 267 59 20 chr4 9210927 9211028 -175077634 + L2 LINE L2 2911 3015 -257 231 235 59 0 chr4 9211422 9211490 -175077172 + MIR SINE MIR 117 188 -74 220 241 149 0 chr4 9212458 9212545 -175076117 + MIR SINE MIR 48 147 -115 306 188 0 79 chr4 9212646 9212811 -175075851 + C-rich Low_complexity Low_complexity 6 157 0 23 33 0 0 chr4 9212830 9212860 -175075802 + GC_rich Low_complexity Low_complexity 1 30 0 28 29 0 0 chr4 9212892 9212927 -175075735 + GC_rich Low_complexity Low_complexity 1 35 0 205 243 19 39 chr4 9212995 9213098 -175075564 + C-rich Low_complexity Low_complexity 4 104 0 225 221 13 39 chr4 9213174 9213251 -175075411 + (CCCCG)n Simple_repeat Simple_repeat 4 78 0 460 276 35 52 chr4 9213880 9214054 -175074608 + MIR SINE MIR 22 192 -70 496 129 24 0 chr4 9214268 9214353 -175074309 - MIR SINE MIR -112 150 64 255 250 0 0 chr4 9214980 9215096 -175073566 + (TG)n Simple_repeat Simple_repeat 2 117 0 1930 243 118 21 chr4 9215256 9216040 -175072622 - MER45C DNA AcHobo 0 953 6 505 297 88 0 chr4 9216084 9216266 -175072396 - MIR SINE MIR 0 262 65 1766 179 82 9 chr4 9216805 9217145 -175071517 - MLT1A1 LTR MaLR 0 365 1 329 0 0 24 chr4 9217283 9217325 -175071337 + (TG)n Simple_repeat Simple_repeat 2 42 0 330 267 145 35 chr4 9217335 9217544 -175071118 - MIR SINE MIR -6 256 38 302 271 138 9 chr4 9219038 9219248 -175069414 + L2 LINE L2 2832 3068 -245 192 77 0 0 chr4 9219308 9219334 -175069328 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 425 307 84 18 chr4 9219655 9219880 -175068782 + LTR33 LTR ERVL 10 249 -272 1171 323 62 13 chr4 9219921 9220141 -175068521 + HERVL LTR ERVL 3747 3955 -1699 1918 202 146 17 chr4 9220141 9220601 -175068061 - MLT2B1 LTR ERVL 0 520 2 1171 323 62 13 chr4 9220601 9220916 -175067746 + HERVL LTR ERVL 3955 4308 -1346 341 232 24 0 chr4 9221311 9221393 -175067269 + MER94 DNA DNA 1 84 -50 1041 176 129 24 chr4 9221434 9221708 -175066954 + MLT1A1 LTR MaLR 6 341 -55 2239 119 0 0 chr4 9221708 9222137 -175066525 - AluSx SINE Alu 0 429 1 400 187 27 0 chr4 9222138 9222213 -175066449 + MLT1A1 LTR MaLR 288 364 -1 * 2053 205 34 18 chr4 9222213 9222654 -175066008 - MLT1C LTR MaLR -19 448 1 411 340 80 4 chr4 9222659 9222897 -175065765 + HERVL LTR ERVL 4828 5083 -681 411 283 121 53 chr4 9223334 9223656 -175065006 + LTR33 LTR ERVL 1 344 -177 183 348 174 0 chr4 9223814 9223929 -175064733 + MIR SINE MIR 47 181 -81 2574 120 10 135 chr4 9223929 9224506 -175064156 + MLT1D LTR MaLR 1 505 0 1761 271 34 6 chr4 9224746 9225252 -175063410 - MLT1H1 LTR MaLR -3 552 33 212 260 110 0 chr4 9225364 9225437 -175063225 - L2 LINE L2 -1 3312 3232 474 344 54 0 chr4 9225457 9225681 -175062981 - MIR SINE MIR -19 243 8 1507 176 7 46 chr4 9225769 9226076 -175062586 + AluJo SINE Alu 1 295 -17 232 293 51 32 chr4 9226198 9226355 -175062307 - L2 LINE L2 -336 2977 2818 298 327 9 9 chr4 9226515 9226622 -175062040 - MIR SINE MIR -56 152 46 199 277 158 71 chr4 9226895 9227079 -175061583 - MIR SINE MIR 0 262 63 356 212 189 15 chr4 9227206 9227338 -175061324 + L2 LINE L2 2918 3072 -241 438 259 40 26 chr4 9227352 9227603 -175061059 - L2 LINE L2 -328 2944 2580 226 341 47 0 chr4 9227638 9227723 -175060939 - L2 LINE L2 -4 3268 3180 426 321 114 25 chr4 9227825 9228199 -175060463 + LTR16A LTR ERVL 13 436 -28 260 307 40 10 chr4 9228210 9228311 -175060351 - L1MC/D LINE L1 -766 5578 5475 400 174 0 83 chr4 9228427 9228465 -175060197 - L1MC/D LINE L1 -771 5471 5431 2114 109 0 0 chr4 9228465 9228779 -175059883 - AluSx SINE Alu 0 314 1 400 174 0 83 chr4 9228779 9228848 -175059814 - L1MC/D LINE L1 -811 5431 5372 547 270 20 0 chr4 9228851 9229003 -175059659 - L1MC/D LINE L1 -1102 5044 4890 389 308 89 16 chr4 9229354 9229601 -175059061 + L1MC4 LINE L1 7707 7971 -71 221 309 0 0 chr4 9229764 9229819 -175058843 + CT-rich Low_complexity Low_complexity 3 57 0 519 279 7 15 chr4 9230168 9230304 -175058358 + MIR SINE MIR 66 200 -62 267 367 7 43 chr4 9230880 9231019 -175057643 - MIR SINE MIR -74 188 55 276 275 46 37 chr4 9231050 9231159 -175057503 - MIR SINE MIR -66 142 33 21 0 0 0 chr4 9231743 9231764 -175056898 + AT_rich Low_complexity Low_complexity 1 21 0 1864 143 20 0 chr4 9232078 9232372 -175056290 + AluJo SINE Alu 1 300 -12 242 276 41 20 chr4 9232479 9232577 -175056085 - MLT1J LTR MaLR -90 421 322 1078 93 0 0 chr4 9233135 9233274 -175055388 - AluSg SINE Alu -171 139 1 524 313 60 19 chr4 9233341 9233609 -175055053 - LTR16A LTR ERVL -7 443 165 271 248 88 29 chr4 9233888 9233984 -175054678 - L1MC/D LINE L1 -2689 3457 3349 2023 104 6 31 chr4 9233984 9234302 -175054360 - AluSx SINE Alu -2 310 1 271 248 88 29 chr4 9234302 9234342 -175054320 - L1MC/D LINE L1 -2797 3349 3313 222 226 19 0 chr4 9234518 9234571 -175054091 + MIR SINE MIR 79 132 -76 188 300 57 43 chr4 9234708 9234778 -175053884 + L2 LINE L2 3242 3312 -1 1890 127 58 0 chr4 9234885 9235176 -175053486 + AluSx SINE Alu 1 308 -4 234 0 0 0 chr4 9235311 9235337 -175053325 + (TTAA)n Simple_repeat Simple_repeat 4 29 0 868 303 50 54 chr4 9235415 9235838 -175052824 + MLT1J LTR MaLR 13 433 -78 3941 157 18 17 chr4 9236005 9236662 -175052000 + L1MB7 LINE L1 5520 6177 -7 225 328 64 8 chr4 9236813 9236938 -175051724 + MIR SINE MIR 51 182 -80 2145 186 23 49 chr4 9237260 9237733 -175050929 - MLT1C LTR MaLR 0 467 7 221 232 195 0 chr4 9237799 9237881 -175050781 - L2 LINE L2 -17 3296 3199 242 311 17 3 chr4 9238438 9238563 -175050099 + MIR SINE MIR 48 212 -50 1907 145 86 17 chr4 9238574 9238865 -175049797 - L1MB3 LINE L1 -2 6181 5859 2376 82 0 0 chr4 9238865 9239170 -175049492 + AluY SINE Alu 1 305 -6 1907 145 86 17 chr4 9239170 9239237 -175049425 - L1MB3 LINE L1 -324 5859 5798 228 275 103 101 chr4 9239465 9239495 -175049167 - L1MC/D LINE L1 -1916 5892 5864 2250 97 0 0 chr4 9239495 9239794 -175048868 - AluSx SINE Alu -13 299 1 228 275 103 101 chr4 9239794 9240395 -175048267 - L1MC/D LINE L1 -1944 5864 5260 251 119 0 0 chr4 9240794 9240836 -175047826 - L2 LINE L2 -219 3053 3012 217 261 31 0 chr4 9241089 9241154 -175047508 - MIR SINE MIR -83 179 113 201 260 30 50 chr4 9241568 9241668 -175046994 + C-rich Low_complexity Low_complexity 2 99 0 198 302 47 0 chr4 9241764 9241850 -175046812 - L2 LINE L2 -1 3271 3182 385 239 16 6 chr4 9242024 9242345 -175046317 + (TG)n Simple_repeat Simple_repeat 1 324 0 233 254 0 0 chr4 9242373 9242440 -175046222 + (TG)n Simple_repeat Simple_repeat 2 68 0 447 216 8 36 chr4 9242461 9242836 -175045826 + (TG)n Simple_repeat Simple_repeat 1 364 0 210 191 149 0 chr4 9243982 9244029 -175044633 - L2 LINE L2 -2 3311 3258 279 311 67 8 chr4 9244218 9244337 -175044325 - MIR SINE MIR -74 188 63 243 0 0 0 chr4 9244899 9244926 -175043736 + (CA)n Simple_repeat Simple_repeat 2 28 0 766 305 59 25 chr4 9245184 9245538 -175043124 + L2 LINE L2 2920 3285 -28 415 272 19 0 chr4 9246148 9246251 -175042411 + MIR3 SINE MIR 82 186 -22 198 0 0 0 chr4 9246255 9246277 -175042385 + (TG)n Simple_repeat Simple_repeat 1 22 0 337 324 75 23 chr4 9246376 9246549 -175042113 - MIR SINE MIR -24 238 57 586 221 139 19 chr4 9247126 9247284 -175041378 + MIR SINE MIR 73 249 -13 279 285 31 92 chr4 9247717 9247847 -175040815 + MIR SINE MIR 29 143 -65 604 289 38 30 chr4 9248317 9248348 -175040314 + L2 LINE L2 3077 3106 -207 1256 179 24 94 chr4 9248348 9248678 -175039984 - AluJo SINE Alu -1 311 5 604 289 38 30 chr4 9248678 9248881 -175039781 + L2 LINE L2 3106 3313 0 194 238 113 50 chr4 9249161 9249241 -175039421 + MIR3 SINE MIR 95 179 -29 203 333 26 39 chr4 9249705 9249858 -175038804 - MIR SINE MIR -84 178 28 * 226 352 69 21 chr4 9249856 9250001 -175038661 + L2 LINE L2 2899 3050 -222 222 302 0 0 chr4 9250395 9250448 -175038214 + L2 LINE L2 3213 3265 -7 271 310 136 19 chr4 9250578 9250733 -175037929 - MIR3 SINE MIR -21 187 15 265 469 40 6 chr4 9453901 9454076 -174834586 + MER5A DNA MER1_type 9 189 0 602 414 13 4 chr4 9455685 9455917 -174832745 + AluSp SINE Alu 2 235 -78 609 405 9 4 chr4 9458375 9458607 -174830055 + AluSg SINE Alu 64 296 -14 23 0 0 0 chr4 9458659 9458682 -174829980 + GC_rich Low_complexity Low_complexity 1 23 0 421 385 29 15 chr4 9459909 9460114 -174828548 - SVA Other Other -1045 341 134 198 0 0 0 chr4 9460211 9460233 -174828429 + (TAA)n Simple_repeat Simple_repeat 2 23 0 258 381 48 0 chr4 9460300 9460426 -174828236 + AluSq/x SINE Alu 2 133 -169 27 0 0 0 chr4 9461684 9461711 -174826951 + AT_rich Low_complexity Low_complexity 1 27 0 198 0 0 0 chr4 9462237 9462259 -174826403 + (CCG)n Simple_repeat Simple_repeat 2 23 0 681 338 90 63 chr4 9462677 9463278 -174825384 + L1M4 LINE L1 3676 4292 -1854 380 418 5 5 chr4 9463301 9463509 -174825153 + L1PA15 LINE L1 5807 6014 -151 23 0 0 0 chr4 9463788 9463811 -174824851 + AT_rich Low_complexity Low_complexity 1 23 0 474 461 11 7 chr4 9463878 9464158 -174824504 - AluSq SINE Alu -30 283 3 426 307 20 0 chr4 9465763 9465864 -174822798 - SVA Other Other -1091 295 193 354 373 75 0 chr4 9465864 9466025 -174822637 + FAM SINE Alu 1 173 -2 559 384 11 0 chr4 9467310 9467487 -174821175 - SVA Other Other -1076 310 132 301 298 53 0 chr4 9470394 9470488 -174818174 - L2 LINE L2 -1 3312 3214 269 279 0 0 chr4 9471365 9471444 -174817218 + A-rich Low_complexity Low_complexity 1 79 0 2418 102 0 9 chr4 9472622 9472937 -174815725 - AluSx SINE Alu 0 312 1 21 0 0 0 chr4 9472938 9472959 -174815703 + AT_rich Low_complexity Low_complexity 1 21 0 269 215 0 43 chr4 9473073 9473166 -174815496 + (TA)n Simple_repeat Simple_repeat 1 89 0 184 294 272 11 chr4 9476168 9476260 -174812402 - L2 LINE L2 -8 3264 3149 184 183 183 14 chr4 9476232 9476303 -174812359 + L3 LINE CR1 615 697 -880 * 198 273 18 0 chr4 9476302 9476357 -174812305 - MIR SINE MIR -48 214 159 2112 126 40 7 chr4 9476378 9476679 -174811983 + AluSx SINE Alu 1 311 -1 1147 211 72 7 chr4 9476923 9477227 -174811435 + MER33 DNA MER1_type 1 324 0 982 213 43 14 chr4 9477744 9477951 -174810711 - MIR SINE MIR -43 219 7 394 276 111 50 chr4 9477954 9478135 -174810527 - MIR SINE MIR -51 211 20 2425 99 3 0 chr4 9482005 9482308 -174806354 + AluSx SINE Alu 1 304 -8 2450 90 0 3 chr4 9482839 9483149 -174805513 - AluSx SINE Alu -3 309 1 280 336 118 8 chr4 9484294 9484413 -174804249 - L2 LINE L2 -8 3264 3133 259 253 0 25 chr4 9484654 9484733 -174803929 - L1ME LINE L1 -302 5819 5743 238 277 256 15 chr4 9484787 9484924 -174803738 - L2 LINE L2 -177 3095 2926 211 269 141 0 chr4 9485328 9485406 -174803256 - MIR SINE MIR -90 172 84 524 318 95 37 chr4 9485817 9486144 -174802518 - L2 LINE L2 -1 3312 2967 181 213 40 67 chr4 9486372 9486447 -174802215 - L2 LINE L2 -79 3234 3162 300 293 132 9 chr4 9486544 9486650 -174802012 - L2 LINE L2 -1 3271 3153 2298 111 3 0 chr4 9488069 9488366 -174800296 + AluSx SINE Alu 1 298 -14 2026 158 0 3 chr4 9488699 9489009 -174799653 + AluJb SINE Alu 1 309 -3 343 349 38 0 chr4 9489314 9489446 -174799216 - L2 LINE L2 -9 3263 3127 322 252 159 27 chr4 9490645 9490817 -174797845 - MIR3 SINE MIR -21 241 47 217 258 86 43 chr4 9491563 9491656 -174797006 - MIR SINE MIR -81 181 85 226 262 98 0 chr4 9491736 9491797 -174796865 - L2 LINE L2 -38 3275 3209 278 290 20 10 chr4 9491931 9492031 -174796631 - L2 LINE L2 -427 2887 2787 281 240 250 42 chr4 9492161 9492353 -174796309 + MIR SINE MIR 2 233 -29 533 335 62 0 chr4 9492770 9492964 -174795698 - MIR SINE MIR -30 232 27 435 236 149 43 chr4 9493420 9493581 -174795081 + MER5B DNA MER1_type 1 178 0 209 299 0 30 chr4 9494834 9494901 -174793761 + L2 LINE L2 3132 3196 -76 3563 38 11 27 chr4 9494986 9495437 -174793225 - MLT2A1 LTR ERVL 0 444 1 3564 79 24 31 chr4 9495437 9495641 -174793021 - HERVL-A1 LTR ERVL 0 5654 5450 2231 104 0 0 chr4 9495641 9495920 -174792742 + AluSx SINE Alu 1 279 -33 399 83 0 0 chr4 9495920 9495980 -174792682 + (CATA)n Simple_repeat Simple_repeat 1 60 0 3564 79 24 31 chr4 9495980 9496320 -174792342 - HERVL-A1 LTR ERVL -202 5452 5113 240 0 0 0 chr4 9496322 9496350 -174792312 - MLT2A2 LTR ERVL -422 31 4 330 347 75 17 chr4 9496468 9496762 -174791900 + L2 LINE L2 2386 2696 -618 558 179 125 9 chr4 9499429 9499541 -174789121 - FLAM_A SINE Alu -8 125 1 2279 97 30 0 chr4 9499579 9499879 -174788783 + AluSc SINE Alu 1 309 0 257 258 21 43 chr4 9499915 9500008 -174788654 - MIR3 SINE MIR -6 202 112 833 328 8 0 chr4 9500176 9500417 -174788245 - MIR SINE MIR 0 262 20 2190 131 3 6 chr4 9500451 9500765 -174787897 - AluSq SINE Alu 0 313 1 277 255 122 20 chr4 9500951 9501049 -174787613 + MIR SINE MIR 24 131 -131 1719 137 56 14 chr4 9501317 9501433 -174787229 + AluJb SINE Alu 1 111 -201 180 0 0 0 chr4 9501433 9501453 -174787209 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1719 137 56 14 chr4 9501453 9501621 -174787041 + AluJb SINE Alu 111 297 -15 2389 96 3 0 chr4 9502228 9502531 -174786131 + AluSx SINE Alu 1 304 -8 352 246 169 27 chr4 9502969 9503152 -174785510 + MIR SINE MIR 28 236 -26 2302 93 0 35 chr4 9503303 9503614 -174785048 + AluSq SINE Alu 1 300 -13 186 152 0 0 chr4 9504917 9504950 -174783712 - L2 LINE L2 -260 3053 3021 370 297 24 91 chr4 9505915 9506124 -174782538 - MIR SINE MIR -11 251 57 2250 91 7 0 chr4 9506623 9506910 -174781752 - AluSq SINE Alu -18 295 7 1282 164 9 13 chr4 9507068 9507083 -174781579 - AluJo SINE Alu -2 310 296 2473 85 0 0 chr4 9507083 9507389 -174781273 - AluSg SINE Alu -4 306 1 1282 164 9 13 chr4 9507389 9507599 -174781063 - AluJo SINE Alu -16 296 86 956 170 12 29 chr4 9507739 9507910 -174780752 - FRAM SINE Alu -9 167 1 2354 94 0 3 chr4 9508251 9508550 -174780112 - AluSq SINE Alu -15 298 1 1678 176 13 20 chr4 9508669 9508975 -174779687 - AluJb SINE Alu -6 306 3 1248 131 0 6 chr4 9508989 9509164 -174779498 - AluSg/x SINE Alu -5 307 134 2439 93 0 0 chr4 9509164 9509465 -174779197 - AluSg SINE Alu -9 301 1 1124 215 0 14 chr4 9509516 9509739 -174778923 - AluJo SINE Alu -5 307 88 320 283 88 11 chr4 9509889 9510014 -174778648 + MIR SINE MIR 51 181 -68 2137 122 0 3 chr4 9510389 9510684 -174777978 + AluSx SINE Alu 1 294 -18 1985 117 92 0 chr4 9512481 9512763 -174775899 + AluSx SINE Alu 1 308 -4 186 307 69 0 chr4 9513307 9513408 -174775254 + MER5A DNA MER1_type 37 144 -45 226 239 70 0 chr4 9513487 9513558 -174775104 + MIR SINE MIR 65 140 -122 295 321 58 15 chr4 9513638 9513775 -174774887 + MIR SINE MIR 116 258 -4 190 243 0 81 chr4 9514201 9514275 -174774387 - MIR SINE MIR -120 142 75 234 240 0 0 chr4 9514665 9514715 -174773947 - L2 LINE L2 -86 3186 3137 248 264 91 36 chr4 9514776 9514886 -174773776 + MIR SINE MIR 7 122 -140 832 188 58 34 chr4 9515080 9515288 -174773374 - MER20 DNA MER1_type 0 219 7 185 218 218 16 chr4 9515629 9515753 -174772909 - L2 LINE L2 -236 3036 2888 186 208 75 0 chr4 9515770 9515823 -174772839 + L2 LINE L2 3142 3198 -74 340 338 75 6 chr4 9515860 9516020 -174772642 + MIR SINE MIR 12 182 -80 1220 84 0 0 chr4 9516021 9516163 -174772499 + AluSq/x SINE Alu 1 142 -170 279 270 37 0 chr4 9516196 9516288 -174772374 - MIR SINE MIR -68 140 69 2265 121 0 0 chr4 9517986 9518283 -174770379 + AluSx SINE Alu 1 297 -15 2261 116 0 13 chr4 9518359 9518669 -174769993 - AluSg SINE Alu -4 306 1 223 196 20 0 chr4 9518839 9518890 -174769772 - L2 LINE L2 -1388 1926 1875 233 200 0 0 chr4 9519174 9519219 -174769443 - L2 LINE L2 -18 3254 3210 628 268 84 74 chr4 9519236 9519549 -174769113 - L2 LINE L2 0 3313 3005 2115 99 10 42 chr4 9519549 9519862 -174768800 + AluSx SINE Alu 1 303 -9 628 268 84 74 chr4 9519862 9520088 -174768574 - L2 LINE L2 -308 3005 2750 694 238 37 0 chr4 9520088 9520252 -174768410 - FAM SINE Alu -5 170 1 628 268 84 74 chr4 9520252 9520280 -174768382 - L2 LINE L2 -563 2750 2724 300 207 0 0 chr4 9520285 9520347 -174768315 - MLT1E3 LTR MaLR -5 619 565 25 0 0 0 chr4 9520381 9520406 -174768256 + AT_rich Low_complexity Low_complexity 1 25 0 265 279 0 63 chr4 9521012 9521202 -174767460 + GA-rich Low_complexity Low_complexity 3 180 0 * 335 293 11 29 chr4 9521093 9521267 -174767395 + A-rich Low_complexity Low_complexity 3 173 0 1617 195 0 10 chr4 9521301 9521593 -174767069 - AluJo SINE Alu -23 289 1 432 234 188 8 chr4 9521611 9521739 -174766923 - MLT1E1 LTR MaLR -503 151 1 1726 253 172 41 chr4 9521739 9522408 -174766254 - L2 LINE L2 -586 2728 2148 1845 110 49 0 chr4 9522408 9522671 -174765991 + AluSg SINE Alu 33 308 -2 1726 253 172 41 chr4 9522671 9522781 -174765881 - L2 LINE L2 -1166 2148 2054 1481 128 6 144 chr4 9522781 9523101 -174765561 + AluJb SINE Alu 1 276 -36 1726 253 172 41 chr4 9523101 9523253 -174765409 - L2 LINE L2 -1260 2054 1923 207 0 0 0 chr4 9523253 9523276 -174765386 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1726 253 172 41 chr4 9523276 9523467 -174765195 - L2 LINE L2 -1391 1923 1456 310 106 76 0 chr4 9523504 9523570 -174765092 + CT-rich Low_complexity Low_complexity 3 73 0 2355 108 0 0 chr4 9523634 9523929 -174764733 - AluSx SINE Alu -17 295 1 4246 165 45 12 chr4 9523961 9524787 -174763875 - L1MC1 LINE L1 0 6333 5481 794 186 3 43 chr4 9524865 9524884 -174763778 - MLT1A1 LTR MaLR 0 365 347 2367 94 3 19 chr4 9524884 9525202 -174763460 - AluSp SINE Alu 0 313 1 794 186 3 43 chr4 9525202 9525491 -174763171 - MLT1A1 LTR MaLR -18 347 1 366 262 210 15 chr4 9525513 9525784 -174762878 - L2 LINE L2 -1986 1328 1005 242 315 108 0 chr4 9527076 9527187 -174761475 + MIR3 SINE MIR 60 182 -26 215 284 196 7 chr4 9527769 9527917 -174760745 - L2 LINE L2 -228 3085 2910 849 200 51 0 chr4 9528090 9528285 -174760377 - MER3 DNA MER1_type -4 205 1 216 97 0 0 chr4 9528892 9528923 -174759739 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 2275 109 3 0 chr4 9529166 9529470 -174759192 - AluSx SINE Alu -7 305 1 339 312 0 0 chr4 9531541 9531634 -174757028 + L2 LINE L2 2967 3059 -213 2681 48 3 3 chr4 9533452 9533765 -174754897 + AluSp SINE Alu 1 313 0 646 263 23 23 chr4 9533832 9534003 -174754659 - MER5B DNA MER1_type -5 173 3 370 310 41 35 chr4 9534078 9534223 -174754439 + L2 LINE L2 3167 3312 -1 2076 120 43 10 chr4 9534307 9534606 -174754056 - AluSg SINE Alu -1 309 1 361 242 62 4 chr4 9534671 9534787 -174753875 - MIR SINE MIR -62 146 30 2257 86 3 16 chr4 9535065 9535201 -174753461 + AluSx SINE Alu 1 137 -175 2470 67 0 3 chr4 9535201 9535498 -174753164 + AluY SINE Alu 1 296 -15 2257 86 3 16 chr4 9535498 9535665 -174752997 + AluSx SINE Alu 137 300 -12 672 315 67 10 chr4 9536151 9536465 -174752197 - L1ME3A LINE L1 -76 6094 5763 1661 74 30 0 chr4 9536693 9536895 -174751767 - AluSg/x SINE Alu -14 296 89 1905 105 86 4 chr4 9536901 9537168 -174751494 + AluSg SINE Alu 1 289 -21 306 67 22 0 chr4 9537168 9537213 -174751449 + Alu SINE Alu 1 46 -256 1595 260 115 50 chr4 9537213 9537386 -174751276 - L1ME3A LINE L1 -1427 4719 4559 2313 111 0 0 chr4 9537386 9537683 -174750979 + AluSx SINE Alu 1 297 -15 1595 260 115 50 chr4 9537683 9537881 -174750781 - L1ME3A LINE L1 -1587 4559 4375 2564 85 6 0 chr4 9537881 9538244 -174750418 - L1PA8 LINE L1 0 6172 5808 1595 260 115 50 chr4 9538244 9538943 -174749719 - L1ME3A LINE L1 -1771 4375 3579 2175 111 0 13 chr4 9538997 9539316 -174749346 + AluSx SINE Alu 5 312 0 639 198 48 0 chr4 9539376 9539502 -174749160 + FLAM_A SINE Alu 1 132 -1 280 245 53 0 chr4 9539748 9539842 -174748820 - L1ME3A LINE L1 -2573 3573 3475 720 217 44 6 chr4 9540160 9540340 -174748322 - MER5A DNA MER1_type 0 189 3 214 245 31 51 chr4 9540352 9540450 -174748212 + L2 LINE L2 3169 3264 -49 1134 146 34 0 chr4 9540821 9540999 -174747663 - AluSg/x SINE Alu 0 310 127 2397 107 0 0 chr4 9540999 9541308 -174747354 - AluSg1 SINE Alu 0 309 1 2638 19 6 35 chr4 9541325 9541640 -174747022 + AluY SINE Alu 1 306 -5 202 179 0 0 chr4 9541819 9541858 -174746804 + L2 LINE L2 3218 3256 -16 2214 102 0 14 chr4 9542597 9542890 -174745772 - AluSx SINE Alu -23 289 1 247 287 77 35 chr4 9543311 9543454 -174745208 + MIR SINE MIR 80 228 -34 355 279 74 16 chr4 9543986 9544108 -174744554 - L2 LINE L2 -5 3308 3180 333 241 58 0 chr4 9544129 9544216 -174744446 + MER69 DNA AcHobo 2435 2526 0 254 225 234 0 chr4 9544322 9544433 -174744229 - Charlie8 DNA MER1_type -2245 172 36 1468 159 40 0 chr4 9545656 9545883 -174742779 + AluJb SINE Alu 42 277 -35 206 0 69 0 chr4 9545890 9545919 -174742743 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 264 59 0 0 chr4 9546355 9546389 -174742273 + (CA)n Simple_repeat Simple_repeat 1 34 0 1750 166 6 32 chr4 9546406 9546720 -174741942 - AluJo SINE Alu -6 306 1 2662 20 0 7 chr4 9546875 9547170 -174741492 - AluYa5 SINE Alu -18 293 1 1921 158 0 32 chr4 9548067 9548377 -174740285 - AluJb SINE Alu -12 300 1 2166 97 7 7 chr4 9551791 9552081 -174736581 - AluSx SINE Alu -22 290 1 539 93 0 0 chr4 9552597 9552672 -174735990 - AluJ/FRAM SINE Alu -8 304 230 1068 259 15 23 chr4 9552802 9553145 -174735517 - L1MC4 LINE L1 -2 8040 7701 1192 112 0 12 chr4 9553146 9553307 -174735355 - AluSg/x SINE Alu -17 295 137 767 218 34 10 chr4 9553308 9553514 -174735148 - L1MC4 LINE L1 -414 7628 7418 1040 219 138 12 chr4 9553551 9553797 -174734865 - AluJo SINE Alu -30 282 6 1582 214 163 12 chr4 9553800 9554286 -174734376 - L1MC4 LINE L1 -654 7388 6830 366 303 68 25 chr4 9554555 9554717 -174733945 - MIR SINE MIR -74 188 20 2518 82 0 0 chr4 9554789 9555094 -174733568 - AluY SINE Alu -6 305 1 636 287 27 27 chr4 9556354 9556577 -174732085 - MIR SINE MIR -12 250 28 2484 80 0 0 chr4 9557391 9557690 -174730972 - AluY SINE Alu -12 299 1 935 261 30 4 chr4 9558194 9558428 -174730234 + MIR SINE MIR 2 241 -21 247 290 167 14 chr4 9559101 9559239 -174729423 + MIR SINE MIR 9 167 -95 809 250 11 0 chr4 9559627 9559811 -174728851 + MER5A DNA MER1_type 1 186 -3 382 200 265 6 chr4 9560354 9560524 -174728138 + L2 LINE L2 1915 2128 -1186 1363 59 53 0 chr4 9560561 9560748 -174727914 - MER107 DNA MER1_type 0 197 1 315 401 16 29 chr4 9561452 9561694 -174726968 + L1MDa LINE L1 21 259 -6281 2302 116 0 0 chr4 9561798 9562100 -174726562 - AluSx SINE Alu -1 311 10 975 227 74 83 chr4 9562582 9562858 -174725804 + L1MDa LINE L1 913 1190 -5351 2221 117 0 7 chr4 9562858 9563199 -174725463 - AluSx SINE Alu 0 312 1 2074 129 3 7 chr4 9563201 9563496 -174725166 - AluJb SINE Alu -18 294 1 975 227 74 83 chr4 9563496 9563794 -174724868 + L1MDa LINE L1 1191 1440 -5101 628 263 0 11 chr4 9563797 9563972 -174724690 + AluSq SINE Alu 2 174 -139 356 322 66 62 chr4 9564010 9564278 -174724384 - L1M4 LINE L1 -2745 3401 3130 189 0 0 0 chr4 9564278 9564299 -174724363 + (C)n Simple_repeat Simple_repeat 1 21 0 356 322 66 62 chr4 9564299 9564350 -174724312 - L1M4 LINE L1 -3016 3130 3081 253 236 97 0 chr4 9565561 9565633 -174723029 + L2 LINE L2 3234 3312 -1 195 220 0 0 chr4 9567718 9567768 -174720894 + (CGTG)n Simple_repeat Simple_repeat 2 51 0 6965 131 38 26 chr4 9569197 9570230 -174718432 - HSMAR2 DNA Mariner -1 1301 250 2354 100 0 10 chr4 9570230 9570531 -174718131 + AluSc SINE Alu 1 298 -11 6965 131 38 26 chr4 9570531 9570740 -174717922 - HSMAR2 DNA Mariner -1052 250 45 1460 172 75 4 chr4 9570742 9571010 -174717652 - AluJo SINE Alu -24 288 2 362 199 202 17 chr4 9571073 9571208 -174717454 - AluSq SINE Alu -48 255 107 560 240 157 23 chr4 9571592 9571809 -174716853 - MIR SINE MIR 0 262 17 2288 87 7 3 chr4 9571859 9572148 -174716514 + AluSx SINE Alu 3 292 -20 342 282 40 16 chr4 9572197 9572321 -174716341 + MIR SINE MIR 80 206 -56 2531 140 56 22 chr4 9572329 9572643 -174716019 - MER4C LTR ERV1 0 465 130 1590 138 109 4 chr4 9572643 9572918 -174715744 - AluJb SINE Alu -8 304 1 2531 140 56 22 chr4 9572918 9573053 -174715609 - MER4C LTR ERV1 -335 130 1 2272 93 100 28 chr4 9575408 9575807 -174712855 + MSTA LTR MaLR 1 428 0 2025 153 59 50 chr4 9576115 9576307 -174712355 - MSTA LTR MaLR 0 428 239 2406 96 0 0 chr4 9576307 9576599 -174712063 - AluSp SINE Alu -21 292 1 2025 153 59 50 chr4 9576599 9576830 -174711832 - MSTA LTR MaLR -189 239 1 206 333 15 0 chr4 9576989 9577055 -174711607 - L2 LINE L2 -5 3308 3242 278 240 91 50 chr4 9577700 9577821 -174710841 + MIR SINE MIR 20 145 -117 1929 138 7 10 chr4 9578177 9578473 -174710189 + AluJb SINE Alu 14 308 -4 368 265 99 88 chr4 9578989 9579272 -174709390 + L1MC5 LINE L1 7639 7924 -37 1487 138 104 4 chr4 9579299 9579539 -174709123 + AluJo SINE Alu 37 300 -12 2048 132 26 3 chr4 9580236 9580540 -174708122 + AluSx SINE Alu 1 311 -1 2345 103 0 6 chr4 9580556 9580867 -174707795 + AluSx SINE Alu 1 309 -3 278 238 188 0 chr4 9581128 9581229 -174707433 + MIR SINE MIR 34 153 -55 212 281 22 45 chr4 9581329 9581359 -174707303 - MIR SINE MIR -70 192 163 1979 147 0 26 chr4 9581359 9581671 -174706991 - AluJo SINE Alu -8 304 1 212 281 22 45 chr4 9581671 9581729 -174706933 - MIR SINE MIR -99 163 106 244 281 34 22 chr4 9581787 9581876 -174706786 + L1ME4a LINE L1 5963 6052 -69 1178 150 0 11 chr4 9581889 9582076 -174706586 - AluSg/x SINE Alu -6 304 120 1686 173 8 4 chr4 9582123 9582389 -174706273 + AluJb SINE Alu 1 267 -45 2389 79 3 10 chr4 9584985 9585290 -174703372 + AluSp SINE Alu 1 303 -10 200 323 0 0 chr4 9585484 9585546 -174703116 + MIR SINE MIR 82 143 -119 337 264 33 137 chr4 9585669 9585724 -174702938 - L1ME4a LINE L1 -14 6107 6048 1719 149 39 62 chr4 9585724 9585875 -174702787 + AluJb SINE Alu 1 143 -169 2044 116 42 3 chr4 9585875 9586160 -174702502 + AluSx SINE Alu 1 296 -16 1719 149 39 62 chr4 9586160 9586317 -174702345 + AluJb SINE Alu 143 302 -10 337 264 33 137 chr4 9586317 9586443 -174702219 - L1ME4a LINE L1 -73 6048 5945 211 224 0 35 chr4 9586493 9586551 -174702111 + MIR SINE MIR 106 161 -101 1961 157 3 0 chr4 9586551 9586851 -174701811 + AluJo SINE Alu 1 301 -11 2357 79 3 25 chr4 9586992 9587307 -174701355 - AluY SINE Alu -3 308 1 280 216 72 36 chr4 9588588 9588699 -174699963 + MIR3 SINE MIR 87 201 -7 2108 138 0 3 chr4 9588761 9589072 -174699590 - AluJb SINE Alu -2 310 1 242 337 47 0 chr4 9590764 9590850 -174697812 - L2 LINE L2 -40 3232 3143 192 294 88 0 chr4 9590913 9591015 -174697647 + MIR SINE MIR 33 143 -65 444 268 150 0 chr4 9591084 9591237 -174697425 - MER5B DNA MER1_type 0 178 3 405 215 0 13 chr4 9594967 9595046 -174693616 - FLAM SINE Alu -7 126 49 23 0 0 0 chr4 9595390 9595413 -174693249 + AT_rich Low_complexity Low_complexity 1 23 0 283 233 55 0 chr4 9596267 9596340 -174692322 - MER46A DNA MER2_type -1 235 159 309 257 14 0 chr4 9596340 9596414 -174692248 - Tigger3(Golem) DNA MER2_type 0 3037 2963 366 303 68 25 chr4 9596677 9596839 -174691823 + MIR SINE MIR 20 188 -74 1508 218 166 12 chr4 9597108 9597590 -174691072 + L1MC4 LINE L1 6830 7385 -657 2532 70 0 0 chr4 9597595 9597896 -174690766 + AluY SINE Alu 6 306 -5 222 149 43 0 chr4 9598210 9598257 -174690405 + MIR SINE MIR 105 153 -55 626 276 22 0 chr4 9598409 9598590 -174690072 - AluSp SINE Alu -118 195 11 667 285 45 58 chr4 9598600 9598912 -174689750 + L2 LINE L2 3006 3313 0 234 200 0 0 chr4 9598929 9598974 -174689688 + L2 LINE L2 3210 3254 -18 1440 120 0 0 chr4 9599483 9599683 -174688979 + AluSg SINE Alu 1 200 -110 535 138 0 12 chr4 9600388 9600468 -174688194 - AluJ/FLAM SINE Alu -232 80 2 730 178 0 0 chr4 9600469 9600604 -174688058 - MER4C LTR ERV1 -330 135 1 207 196 0 69 chr4 9601702 9601804 -174686858 + (CACAC)n Simple_repeat Simple_repeat 1 95 0 * 494 189 19 36 chr4 9601744 9602138 -174686524 + (CA)n Simple_repeat Simple_repeat 1 387 0 266 190 16 38 chr4 9602230 9602414 -174686248 + (CA)n Simple_repeat Simple_repeat 1 180 0 2098 123 0 0 chr4 9602644 9602945 -174685717 - AluSg SINE Alu -9 301 1 1975 161 0 0 chr4 9602951 9603261 -174685401 - AluJb SINE Alu -2 310 1 180 356 8 51 chr4 9603557 9603675 -174684987 - MIR SINE MIR -42 220 108 1946 113 3 53 chr4 9606802 9607121 -174681541 - AluSq SINE Alu -10 303 1 2092 125 0 0 chr4 9607124 9607421 -174681241 - AluSx SINE Alu -15 297 1 1012 150 0 0 chr4 9607751 9607911 -174680751 + AluSg/x SINE Alu 144 303 -6 2378 69 3 0 chr4 9608037 9608341 -174680321 + AluY SINE Alu 1 305 -6 2640 85 16 6 chr4 9608361 9608727 -174679935 + THE1C LTR MaLR 1 370 -5 1608 208 6 12 chr4 9608844 9609181 -174679481 - MLT1A1 LTR MaLR 0 365 31 2211 94 0 7 chr4 9609559 9609857 -174678805 - AluSq SINE Alu -17 296 1 1949 133 26 0 chr4 9609873 9610175 -174678487 - AluSx SINE Alu -2 310 1 1373 145 103 4 chr4 9610870 9611112 -174677550 - AluJo SINE Alu -10 302 37 399 265 99 88 chr4 9611139 9611422 -174677240 - L1MC5 LINE L1 -37 7924 7639 1814 142 7 10 chr4 9611938 9612234 -174676428 - AluJb SINE Alu -4 308 14 297 240 91 50 chr4 9612590 9612711 -174675951 - MIR SINE MIR -117 145 20 2227 156 59 45 chr4 9613581 9613812 -174674850 + MSTA LTR MaLR 1 242 -186 2268 99 0 0 chr4 9613812 9614106 -174674556 + AluSp SINE Alu 1 294 -19 2227 156 59 45 chr4 9614106 9614296 -174674366 + MSTA LTR MaLR 242 428 0 2461 93 101 25 chr4 9614604 9615002 -174673660 - MSTA LTR MaLR 0 428 1 338 273 36 43 chr4 9616886 9617025 -174671637 + MIR3 SINE MIR 9 146 -62 431 308 33 54 chr4 9617134 9617374 -174671288 + L1M4b LINE L1 11 245 -6614 316 333 130 10 chr4 9617643 9617835 -174670827 + L1M4b LINE L1 1029 1243 -5612 336 284 0 53 chr4 9617835 9617930 -174670732 + L1MC4 LINE L1 6614 6703 -1339 325 230 81 0 chr4 9617917 9617991 -174670671 + L1M4b LINE L1 2523 2602 -4355 * 25 31 0 0 chr4 9618610 9618642 -174670020 + AT_rich Low_complexity Low_complexity 1 32 0 543 267 82 19 chr4 9618795 9619001 -174669661 - MER20 DNA MER1_type 0 219 1 2475 39 0 20 chr4 9619390 9619695 -174668967 - AluY SINE Alu -12 299 1 360 333 49 27 chr4 9619762 9619987 -174668675 + MIR SINE MIR 31 260 -2 542 286 38 72 chr4 9622210 9622472 -174666190 + MER112 DNA MER1_type 2 254 -2 366 322 6 76 chr4 9622570 9622665 -174665997 - MIR3 SINE MIR -50 158 132 2092 124 3 0 chr4 9622665 9622971 -174665691 + AluSx SINE Alu 1 307 -5 366 322 6 76 chr4 9622971 9623077 -174665585 - MIR3 SINE MIR -76 132 20 2281 82 3 0 chr4 9624663 9624967 -174663695 - AluY SINE Alu -6 305 1 227 228 101 13 chr4 9625655 9625734 -174662928 - MIR SINE MIR -60 148 63 307 290 32 11 chr4 9626834 9626927 -174661735 + MIR SINE MIR 51 145 -63 597 213 107 6 chr4 9629932 9630101 -174658561 + MER5A DNA MER1_type 1 186 -3 24 32 0 0 chr4 9630165 9630196 -174658466 + AT_rich Low_complexity Low_complexity 1 31 0 2340 70 0 0 chr4 9630579 9630864 -174657798 + AluSc SINE Alu 3 287 -22 2143 109 0 13 chr4 9631189 9631501 -174657161 - AluSq SINE Alu -5 308 1 227 228 101 13 chr4 9632188 9632267 -174656395 - MIR SINE MIR -60 148 63 307 290 32 11 chr4 9633367 9633460 -174655202 + MIR SINE MIR 51 145 -63 358 206 75 9 chr4 9635386 9635493 -174653169 + L1MD1 LINE L1 4784 4897 -1249 1377 253 39 120 chr4 9635495 9635809 -174652853 + L1MD1 LINE L1 5254 5592 -650 1873 170 3 3 chr4 9635809 9636120 -174652542 + AluSx SINE Alu 1 311 -1 1377 253 39 120 chr4 9636120 9636168 -174652494 + L1MD1 LINE L1 5592 5642 -600 1853 155 0 3 chr4 9636168 9636465 -174652197 - AluJb SINE Alu -6 306 11 1377 253 39 120 chr4 9636465 9636918 -174651744 + L1MD1 LINE L1 5642 6004 -238 * 1928 237 58 8 chr4 9636544 9637063 -174651599 + L1MB8 LINE L1 5625 6169 -9 2609 42 0 0 chr4 9637066 9637375 -174651287 - AluY SINE Alu -2 309 1 247 306 24 0 chr4 9637422 9637507 -174651155 - L2 LINE L2 -1 3312 3226 310 321 30 48 chr4 9637584 9637752 -174650910 - MIR SINE MIR -91 171 7 1273 213 84 3 chr4 9638018 9638314 -174650348 + MLT1C LTR MaLR 140 459 -8 2087 92 0 7 chr4 9638736 9639055 -174649607 + AluSx SINE Alu 1 317 0 1506 213 33 0 chr4 9639061 9639361 -174649301 + AluJb SINE Alu 3 312 0 361 267 199 6 chr4 9639450 9639611 -174649051 + MER117 DNA MER1_type 3 194 -3 1665 191 10 93 chr4 9640444 9640852 -174647810 + MLT1A2 LTR MaLR 1 374 0 2386 57 0 13 chr4 9640958 9641257 -174647405 - AluY SINE Alu -16 295 1 378 283 20 108 chr4 9641421 9641672 -174646990 + L2 LINE L2 2953 3181 -91 404 298 67 8 chr4 9642065 9642209 -174646453 - MIR SINE MIR -56 152 20 180 322 34 0 chr4 9643135 9643194 -174645468 - L2 LINE L2 -5 3267 3207 494 289 72 4 chr4 9643249 9643484 -174645178 - LTR33 LTR ERVL -36 485 235 679 246 7 0 chr4 9643494 9643636 -174645026 + MLT1C LTR MaLR 321 463 -4 2117 185 45 9 chr4 9644254 9644698 -174643964 - MLT1C LTR MaLR -7 460 1 259 229 212 33 chr4 9645885 9646000 -174642662 - MIR SINE MIR -45 163 32 1102 162 33 50 chr4 9646221 9646462 -174642200 - L1MA6 LINE L1 -2 6298 6062 330 130 4 2 chr4 9646462 9646711 -174641951 + AluJo SINE Alu 1 302 0 406 194 153 0 chr4 9646714 9646812 -174641850 - L1MA6 LINE L1 -225 6075 5963 223 62 0 0 chr4 9646823 9646855 -174641807 + (TTTTG)n Simple_repeat Simple_repeat 2 165 0 2105 96 7 0 chr4 9646855 9647135 -174641527 - AluSg SINE Alu -1 313 1 1889 158 5 25 chr4 9647139 9647507 -174641155 - L1 LINE L1 -871 5275 4915 1812 152 0 26 chr4 9648310 9648613 -174640049 + AluSx SINE Alu 1 295 -17 1467 208 31 0 chr4 9648618 9648935 -174639727 + MLT1C LTR MaLR 1 327 -140 * 1557 236 43 10 chr4 9648921 9649319 -174639343 + MER67A LTR ERV1 5 415 -128 698 110 176 73 chr4 9649322 9649458 -174639204 + AluJo SINE Alu 2 151 -161 544 103 0 0 chr4 9649481 9649559 -174639103 - AluJb SINE Alu -81 231 154 244 365 48 0 chr4 9649937 9650041 -174638621 + L2 LINE L2 3180 3288 -25 258 106 0 0 chr4 9650050 9650097 -174638565 + (TGAA)n Simple_repeat Simple_repeat 2 48 0 427 176 0 0 chr4 9651002 9651076 -174637586 - MIR SINE MIR -110 152 79 251 175 140 0 chr4 9651500 9651557 -174637105 + MIR SINE MIR 81 145 -117 458 145 0 0 chr4 9651617 9651686 -174636976 - THE1C LTR MaLR 0 375 307 1916 148 0 13 chr4 9651686 9651996 -174636666 - AluSx SINE Alu -1 311 6 244 260 0 0 chr4 9652100 9652150 -174636512 + (TGG)n Simple_repeat Simple_repeat 2 51 0 197 342 0 0 chr4 9654256 9654332 -174634330 + L2 LINE L2 3197 3272 0 261 119 0 0 chr4 9654332 9654374 -174634288 + (TGAG)n Simple_repeat Simple_repeat 2 43 0 242 267 91 53 chr4 9655626 9655813 -174632849 + L2 LINE L2 3031 3224 -89 2183 229 53 58 chr4 9655916 9656553 -174632109 + L1ME1 LINE L1 5491 6126 -40 2268 95 0 3 chr4 9656553 9656858 -174631804 + AluSq SINE Alu 1 304 -9 2183 229 53 58 chr4 9656858 9656894 -174631768 + L1ME1 LINE L1 6126 6161 -5 240 86 0 0 chr4 9659198 9659233 -174629429 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 621 292 35 42 chr4 9659260 9659520 -174629142 + Charlie8 DNA MER1_type 1 258 -2159 260 146 0 139 chr4 9659688 9659839 -174628823 + (CCCCAG)n Simple_repeat Simple_repeat 3 132 0 203 262 16 16 chr4 9661269 9661330 -174627332 + MIR SINE MIR 81 141 -67 254 224 17 0 chr4 9661434 9661492 -174627170 + L2 LINE L2 2997 3055 -217 186 43 0 0 chr4 9661670 9661693 -174626969 + (TTCA)n Simple_repeat Simple_repeat 2 24 0 239 268 67 41 chr4 9662309 9662489 -174626173 + MIR SINE MIR 7 150 -58 305 269 54 0 chr4 9662904 9662997 -174625665 + MIR SINE MIR 104 201 -61 6889 58 29 2 chr4 9663047 9664072 -174624590 + L1PA7 LINE L1 5106 6153 -1 671 273 109 16 chr4 9664082 9664459 -174624203 - LTR33 LTR ERVL -65 456 45 297 295 11 11 chr4 9664545 9664640 -174624022 - MIR3 SINE MIR -49 159 65 198 0 0 0 chr4 9665003 9665025 -174623637 + (TTCA)n Simple_repeat Simple_repeat 3 24 0 211 254 0 17 chr4 9665100 9665159 -174623503 - MIR SINE MIR -56 152 95 184 327 84 0 chr4 9665427 9665534 -174623128 - MIR SINE MIR -145 117 2 418 234 21 0 chr4 9666244 9666338 -174622324 + MIR SINE MIR 2 97 -165 205 308 33 11 chr4 9668597 9668688 -174619974 + L2 LINE L2 2886 2978 -335 221 300 44 22 chr4 9668820 9668910 -174619752 + L2 LINE L2 3177 3268 -45 628 233 7 0 chr4 9668910 9669060 -174619602 - L1 LINE L1 -1764 4382 4232 * 2358 145 0 3 chr4 9669059 9669439 -174619223 + L1PB3 LINE L1 5734 6112 -42 198 103 0 0 chr4 9669585 9669614 -174619048 + (CACCAT)n Simple_repeat Simple_repeat 4 32 0 655 116 0 101 chr4 9669625 9669824 -174618838 + (CACCAT)n Simple_repeat Simple_repeat 1 179 0 655 116 0 101 chr4 9669838 9670037 -174618625 + (CACCAT)n Simple_repeat Simple_repeat 1 179 0 340 97 32 0 chr4 9670049 9670111 -174618551 + (CACCAT)n Simple_repeat Simple_repeat 5 68 0 688 176 23 6 chr4 9670122 9670298 -174618364 + (CACCAT)n Simple_repeat Simple_repeat 1 179 0 208 107 0 0 chr4 9670298 9670326 -174618336 + (CAT)n Simple_repeat Simple_repeat 1 28 0 318 317 137 22 chr4 9670835 9671018 -174617644 - MIR SINE MIR -6 256 53 608 310 70 0 chr4 9671062 9671275 -174617387 + MIR SINE MIR 35 262 0 220 98 0 59 chr4 9672365 9672416 -174616246 + (TTCC)n Simple_repeat Simple_repeat 4 51 0 249 318 163 20 chr4 9672651 9673050 -174615612 + L2 LINE L2 2817 3272 0 599 365 73 0 chr4 9673110 9673466 -174615196 + L3 LINE CR1 767 1148 -429 581 324 14 19 chr4 9673479 9673692 -174614970 + MIR SINE MIR 8 219 -43 1522 141 94 7 chr4 9674907 9675184 -174613478 + THE1B LTR MaLR 1 301 -63 930 207 45 21 chr4 9675969 9676211 -174612451 - ORSL DNA AcHobo -20 255 8 235 364 79 0 chr4 9677334 9677474 -174611188 + MIR SINE MIR 87 237 -25 563 250 6 0 chr4 9679196 9679870 -174608792 + (CA)n Simple_repeat Simple_repeat 1 678 0 557 232 6 0 chr4 9679887 9680055 -174608607 + (CA)n Simple_repeat Simple_repeat 2 170 0 629 232 0 6 chr4 9680071 9680395 -174608267 + (CA)n Simple_repeat Simple_repeat 1 321 0 228 262 0 0 chr4 9680918 9680979 -174607683 - L1MB3 LINE L1 -1 6182 6122 235 294 73 0 chr4 9681817 9681926 -174606736 - L2 LINE L2 0 3272 3156 198 195 0 0 chr4 9683342 9683383 -174605279 - MIR SINE MIR -113 149 109 261 326 47 0 chr4 9683987 9684073 -174604589 + MIR3 SINE MIR 97 186 -22 574 250 8 15 chr4 9684254 9684386 -174604276 - MER45A DNA AcHobo -2 176 46 2169 95 3 3 chr4 9686193 9686487 -174602175 - AluSq SINE Alu -19 294 1 244 211 18 0 chr4 9687306 9687363 -174601299 - L2 LINE L2 -211 3061 3004 1168 220 90 52 chr4 9688198 9688530 -174600132 + MLT1C LTR MaLR 2 360 -107 2218 102 0 0 chr4 9688530 9688825 -174599837 - AluSc SINE Alu -14 295 1 1168 220 90 52 chr4 9688825 9688938 -174599724 + MLT1C LTR MaLR 360 467 0 345 348 0 0 chr4 9689056 9689145 -174599517 - L1MC4 LINE L1 -1340 6702 6614 * 372 280 38 0 chr4 9689065 9689181 -174599481 + L1MC4 LINE L1 1996 6983 -1339 2115 96 4 0 chr4 9689194 9689475 -174599187 - AluSx SINE Alu -30 282 1 21 0 0 0 chr4 9689477 9689498 -174599164 + AT_rich Low_complexity Low_complexity 1 21 0 8968 248 58 23 chr4 9689503 9690658 -174598004 + L1MD1 LINE L1 1217 2330 -4627 2219 117 3 0 chr4 9690658 9690965 -174597697 + AluSx SINE Alu 1 308 -4 8968 248 58 23 chr4 9690965 9693496 -174595166 + L1MD1 LINE L1 2330 5145 -1812 2505 64 0 3 chr4 9693496 9693808 -174594854 + AluY SINE Alu 1 311 0 8968 248 58 23 chr4 9693808 9694393 -174594269 + L1MD1 LINE L1 5145 5708 -1249 1407 252 39 120 chr4 9694395 9694709 -174593953 + L1MD1 LINE L1 6065 6403 -650 1907 164 3 3 chr4 9694709 9695019 -174593643 + AluSx SINE Alu 1 310 -2 1407 252 39 120 chr4 9695019 9695067 -174593595 + L1MD1 LINE L1 6403 6453 -600 1853 155 0 3 chr4 9695067 9695364 -174593298 - AluJb SINE Alu -6 306 11 1407 252 39 120 chr4 9695364 9695817 -174592845 + L1MD1 LINE L1 6453 6815 -238 * 2048 246 32 4 chr4 9695443 9695981 -174592681 + L1MB8 LINE L1 6436 6990 -5 2660 35 0 0 chr4 9695991 9696302 -174592360 - AluY SINE Alu 0 311 1 263 315 22 0 chr4 9696349 9696441 -174592221 - L2 LINE L2 -1 3312 3219 352 333 24 42 chr4 9696511 9696679 -174591983 - MIR SINE MIR -91 171 7 1167 213 84 3 chr4 9696945 9697241 -174591421 + MLT1C LTR MaLR 140 459 -8 2111 92 0 7 chr4 9697663 9697982 -174590680 + AluSx SINE Alu 1 317 0 1559 213 33 0 chr4 9697988 9698288 -174590374 + AluJb SINE Alu 3 312 0 311 253 208 7 chr4 9698377 9698531 -174590131 + MER117 DNA MER1_type 3 187 -10 1693 189 10 93 chr4 9699371 9699779 -174588883 + MLT1A2 LTR MaLR 1 374 0 2392 60 0 13 chr4 9699885 9700184 -174588478 - AluY SINE Alu -16 295 1 391 287 20 108 chr4 9700348 9700599 -174588063 + L2 LINE L2 2953 3181 -91 441 323 72 7 chr4 9700913 9701136 -174587526 - MIR SINE MIR 0 262 20 193 410 119 11 chr4 9701351 9701612 -174587050 - L2 LINE L2 -345 2969 2681 191 322 34 0 chr4 9702062 9702121 -174586541 - L2 LINE L2 -5 3267 3207 426 289 72 4 chr4 9702176 9702411 -174586251 - LTR33 LTR ERVL -36 485 235 634 250 7 0 chr4 9702421 9702565 -174586097 + MLT1C LTR MaLR 321 465 -2 1977 182 45 9 chr4 9703181 9703625 -174585037 - MLT1C LTR MaLR -7 460 1 230 224 22 62 chr4 9704317 9704496 -174584166 + (CACCT)n Simple_repeat Simple_repeat 5 176 0 207 221 11 79 chr4 9704534 9704724 -174583938 + (CACCT)n Simple_repeat Simple_repeat 4 180 0 246 290 183 30 chr4 9704769 9704900 -174583762 - MIR SINE MIR -80 182 32 1106 162 33 50 chr4 9705121 9705362 -174583300 - L1MA6 LINE L1 -2 6298 6062 331 122 4 2 chr4 9705362 9705611 -174583051 + AluJo SINE Alu 1 302 0 373 194 153 0 chr4 9705614 9705712 -174582950 - L1MA6 LINE L1 -225 6075 5963 2108 104 7 0 chr4 9705731 9706035 -174582627 - AluSg SINE Alu 0 306 1 1752 163 5 25 chr4 9706039 9706407 -174582255 - L1MA6 LINE L1 -871 5275 4915 1852 152 0 26 chr4 9707210 9707513 -174581149 + AluSx SINE Alu 1 295 -17 1365 208 31 0 chr4 9707518 9707835 -174580827 + MLT1C LTR MaLR 1 327 -140 * 1453 231 43 10 chr4 9707821 9708219 -174580443 + MER67A LTR ERV1 5 415 -128 716 109 175 73 chr4 9708221 9708358 -174580304 + AluJo SINE Alu 1 151 -161 552 103 0 0 chr4 9708381 9708459 -174580203 - AluJb SINE Alu -81 231 154 292 266 73 139 chr4 9708508 9708948 -174579714 + L2 LINE L2 2844 3254 -18 282 29 0 0 chr4 9708950 9708985 -174579677 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 364 355 49 16 chr4 9709432 9709615 -174579047 - L1ME4a LINE L1 -8 6113 5925 1550 154 50 50 chr4 9709769 9710067 -174578595 + AluJo SINE Alu 1 298 -14 228 344 135 23 chr4 9710166 9710381 -174578281 - L2 LINE L2 0 3313 3075 231 250 14 14 chr4 9710793 9710865 -174577797 + LTR16C LTR ERVL 418 489 -2 298 289 12 0 chr4 9710902 9710985 -174577677 - L2 LINE L2 -276 3037 2954 757 245 0 16 chr4 9710985 9711177 -174577485 - MLT1A1 LTR MaLR 0 365 177 1489 133 3 98 chr4 9711178 9711563 -174577099 - MER4A LTR ERV1 0 664 257 375 165 94 0 chr4 9711563 9711648 -174577014 - MER4A LTR ERV1 -571 93 1 * 737 239 5 11 chr4 9711648 9711828 -174576834 - MLT1A1 LTR MaLR -186 179 1 1418 242 35 113 chr4 9711829 9712407 -174576255 - L2 LINE L2 -359 2955 2423 1668 261 60 12 chr4 9712614 9713096 -174575566 - MLT1D LTR MaLR 0 505 1 432 339 63 27 chr4 9713567 9713788 -174574874 - MIR SINE MIR -6 256 28 718 196 35 30 chr4 9714054 9714253 -174574409 + MLT2D LTR ERVL 208 407 -7 362 270 40 24 chr4 9714255 9714381 -174574281 + L1MC4 LINE L1 7785 7912 -130 189 213 0 0 chr4 9714381 9714428 -174574234 + (TG)n Simple_repeat Simple_repeat 2 48 0 312 296 92 35 chr4 9714450 9714592 -174574070 + L1MC4 LINE L1 6595 6744 -1298 303 248 38 29 chr4 9716183 9716288 -174572374 + L1ME3A LINE L1 5664 5769 -401 469 246 12 76 chr4 9716295 9716466 -174572196 + L1ME3A LINE L1 6006 6165 -5 929 160 7 7 chr4 9716513 9716663 -174571999 + FRAM SINE Alu 2 151 -15 339 403 31 13 chr4 9716960 9717278 -174571384 + L1MC/D LINE L1 5449 5772 -2036 2392 66 0 3 chr4 9717333 9717635 -174571027 + AluY SINE Alu 1 301 -10 798 96 52 0 chr4 9718669 9718784 -174569878 - L1PA11 LINE L1 0 6174 6054 505 264 109 10 chr4 9718832 9719033 -174569629 + MLT1C LTR MaLR 240 460 -7 830 160 20 85 chr4 9720355 9720440 -174568222 - MLT1B LTR MaLR -203 187 98 2231 123 0 0 chr4 9720440 9720750 -174567912 - AluSx SINE Alu -2 310 1 830 160 20 85 chr4 9720750 9720864 -174567798 - MLT1B LTR MaLR -292 98 1 760 321 4 20 chr4 9721562 9721814 -174566848 + MIR SINE MIR 15 262 0 1958 184 34 50 chr4 9722989 9723407 -174565255 - MLT2D LTR ERVL 0 414 4 475 253 266 0 chr4 9723814 9723972 -174564690 - MIR SINE MIR -25 237 38 499 146 115 0 chr4 9724140 9724236 -174564426 + MER53 DNA DNA 1 107 -82 208 254 111 0 chr4 9724584 9724647 -174564015 + MIR SINE MIR 113 182 -80 591 258 82 6 chr4 9725079 9725238 -174563424 + MIR SINE MIR 44 214 -48 556 317 138 43 chr4 9725368 9725649 -174563013 - L1ME4a LINE L1 -109 6012 5673 2469 52 0 13 chr4 9725649 9725955 -174562707 - AluY SINE Alu -9 302 1 556 317 138 43 chr4 9725955 9726074 -174562588 - L1ME4a LINE L1 -448 5673 5567 23 68 0 0 chr4 9726291 9726335 -174562327 + AT_rich Low_complexity Low_complexity 1 44 0 397 314 84 30 chr4 9726763 9726861 -174561801 + L1M4 LINE L1 2924 3015 -3131 2165 103 3 3 chr4 9726861 9727163 -174561499 - AluSc SINE Alu -7 302 1 397 314 84 30 chr4 9727163 9727623 -174561039 + L1M4 LINE L1 3015 3516 -2630 1846 147 39 23 chr4 9727623 9727758 -174560904 + AluSx SINE Alu 1 132 -180 207 0 0 0 chr4 9727758 9727781 -174560881 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1846 147 39 23 chr4 9727781 9727952 -174560710 + AluSx SINE Alu 132 312 0 611 217 22 0 chr4 9727989 9728127 -174560535 - L1ME1 LINE L1 -1 6165 6025 637 241 11 43 chr4 9729199 9729386 -174559276 + MIR SINE MIR 31 211 -51 297 311 85 28 chr4 9729523 9729700 -174558962 + MIR SINE MIR 13 199 -63 330 237 21 54 chr4 9730463 9730556 -174558106 - L2 LINE L2 -27 3245 3156 558 217 45 18 chr4 9731430 9731575 -174557087 - MIR SINE MIR -54 154 33 182 290 16 32 chr4 9731557 9731619 -174557043 - L2 LINE L2 -536 2778 2718 * 222 142 62 7 chr4 9732790 9732854 -174555808 + MIR SINE MIR 108 146 -62 345 263 72 105 chr4 9732894 9733022 -174555640 - L2 LINE L2 -7 3306 3186 877 207 18 62 chr4 9733022 9733249 -174555413 + MER20 DNA MER1_type 1 217 -2 345 263 72 105 chr4 9733249 9733329 -174555333 - L2 LINE L2 -127 3186 3105 316 308 100 15 chr4 9733619 9733749 -174554913 - MIR SINE MIR -70 192 52 371 235 76 34 chr4 9734411 9734530 -174554132 - MIR SINE MIR -99 163 40 182 234 0 21 chr4 9735713 9735760 -174552902 + MIR SINE MIR 37 82 -126 269 306 119 38 chr4 9736692 9736852 -174551810 - L2 LINE L2 -177 3095 2923 1673 170 4 0 chr4 9736992 9737263 -174551399 + AluSq SINE Alu 24 295 -18 252 161 69 11 chr4 9737714 9737801 -174550861 + (CA)n Simple_repeat Simple_repeat 2 93 0 314 107 101 0 chr4 9737814 9737973 -174550689 + (CA)n Simple_repeat Simple_repeat 1 175 0 334 144 67 16 chr4 9738019 9738527 -174550135 + (CA)n Simple_repeat Simple_repeat 1 533 0 282 147 54 92 chr4 9738529 9738713 -174549949 + (CACTA)n Simple_repeat Simple_repeat 3 179 0 * 521 130 65 16 chr4 9738645 9739073 -174549589 + (CA)n Simple_repeat Simple_repeat 1 449 0 220 318 56 19 chr4 9740167 9740274 -174548388 - L2 LINE L2 -2 3270 3160 186 229 0 71 chr4 9740352 9740422 -174548240 + L2 LINE L2 3248 3312 -1 784 118 49 118 chr4 9740593 9740796 -174547866 + MER53 DNA DNA 1 189 0 245 29 29 0 chr4 9741126 9741160 -174547502 + (CA)n Simple_repeat Simple_repeat 2 36 0 339 333 10 0 chr4 9741161 9741263 -174547399 + L2 LINE L2 3165 3267 -5 341 341 24 2 chr4 9742821 9742959 -174545703 + MIR SINE MIR 11 143 -65 196 402 45 0 chr4 9743025 9743137 -174545525 + L2 LINE L2 3181 3297 -16 424 220 10 0 chr4 9743142 9743242 -174545420 + L1MB3 LINE L1 5639 5739 -432 2204 85 10 0 chr4 9743242 9743536 -174545126 + AluSg SINE Alu 1 297 -13 1419 182 18 74 chr4 9743538 9743741 -174544921 + L1MB3 LINE L1 5823 5997 -186 2177 86 0 0 chr4 9743741 9744031 -174544631 - AluSx SINE Alu -22 290 1 1419 182 18 74 chr4 9744031 9744207 -174544455 + L1MB3 LINE L1 5997 6181 -2 202 256 56 44 chr4 9744556 9744646 -174544016 - MIR SINE MIR -159 103 13 2053 200 57 36 chr4 9744741 9745000 -174543662 + MER66B LTR ERV1 1 276 -210 1889 66 91 0 chr4 9745000 9745241 -174543421 + AluSg SINE Alu 1 263 -47 2053 200 57 36 chr4 9745241 9745455 -174543207 + MER66B LTR ERV1 276 484 -2 235 258 117 47 chr4 9745608 9745736 -174542926 - MIR SINE MIR -70 192 56 375 257 110 7 chr4 9746100 9746236 -174542426 - MER31-int LTR ERV1 -1632 3304 3155 2356 98 0 3 chr4 9746241 9746548 -174542114 + AluSx SINE Alu 2 307 -5 512 289 115 24 chr4 9746548 9746801 -174541861 + LTR16C LTR ERVL 108 383 -108 687 247 12 12 chr4 9747005 9747175 -174541487 + LTR16C LTR ERVL 314 483 -8 307 310 39 16 chr4 9747311 9747440 -174541222 - MIR SINE MIR -117 145 14 209 116 0 23 chr4 9747453 9747496 -174541166 + (GGGA)n Simple_repeat Simple_repeat 2 43 0 203 79 26 0 chr4 9748023 9748061 -174540601 + (TTTTTG)n Simple_repeat Simple_repeat 2 40 0 238 121 35 35 chr4 9748080 9748138 -174540524 + GA-rich Low_complexity Low_complexity 1 58 0 300 316 89 73 chr4 9748581 9748897 -174539765 + L3 LINE CR1 1146 1466 -111 525 330 77 27 chr4 9749090 9749351 -174539311 + MLT1L LTR MaLR 101 374 -241 305 234 0 0 chr4 9750377 9750441 -174538221 - MIR SINE MIR -121 141 78 711 154 18 0 chr4 9750828 9750997 -174537665 + (TCCA)n Simple_repeat Simple_repeat 1 172 0 821 143 25 7 chr4 9751012 9751413 -174537249 + (TCCA)n Simple_repeat Simple_repeat 1 408 0 551 191 17 17 chr4 9751434 9751612 -174537050 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 697 151 30 0 chr4 9751627 9751793 -174536869 + (TCCA)n Simple_repeat Simple_repeat 2 172 0 204 349 84 44 chr4 9751939 9752214 -174536448 - L2 LINE L2 -173 3099 2814 246 267 103 42 chr4 9753259 9753377 -174535285 - MIR SINE MIR -59 149 35 377 82 0 87 chr4 9753958 9754142 -174534520 + (CACCT)n Simple_repeat Simple_repeat 3 170 0 1862 143 0 0 chr4 9754236 9754494 -174534168 - AluSx SINE Alu -11 301 44 2200 109 3 0 chr4 9754533 9754860 -174533802 + AluSx SINE Alu 1 328 0 2266 51 44 7 chr4 9754894 9755203 -174533459 + AluY SINE Alu 1 319 0 1804 144 38 17 chr4 9755975 9756266 -174532396 + AluJo SINE Alu 1 297 -15 182 37 37 0 chr4 9756311 9756338 -174532324 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 1702 177 7 7 chr4 9756338 9756637 -174532025 + AluJo SINE Alu 2 300 -12 187 291 70 23 chr4 9756672 9756758 -174531904 + L2 LINE L2 3003 3092 -221 199 303 110 0 chr4 9756850 9757005 -174531657 + L3 LINE CR1 1295 1466 -111 1662 180 68 22 chr4 9757027 9757313 -174531349 - MLT1B LTR MaLR -17 373 66 1024 101 0 150 chr4 9757313 9757540 -174531122 + 7SK RNA RNA 1 193 0 1662 180 68 22 chr4 9757540 9757608 -174531054 - MLT1B LTR MaLR -324 66 3 258 229 73 42 chr4 9757708 9757804 -174530858 + MIR SINE MIR 33 131 -77 243 315 120 0 chr4 9758694 9758802 -174529860 - L2 LINE L2 -8 3264 3144 234 322 51 0 chr4 9759000 9759118 -174529544 - LTR16C LTR ERVL -286 205 82 2305 123 31 14 chr4 9759344 9759702 -174528960 - THE1B LTR MaLR 0 364 1 180 0 0 0 chr4 9759704 9759724 -174528938 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 234 0 0 0 chr4 9760352 9760378 -174528284 + (TTCA)n Simple_repeat Simple_repeat 2 27 0 301 200 124 57 chr4 9760398 9760503 -174528159 - L2 LINE L2 -28 3285 3174 295 345 79 0 chr4 9761376 9761541 -174527121 - MIR SINE MIR -37 225 48 242 73 24 0 chr4 9761735 9761776 -174526886 + (CA)n Simple_repeat Simple_repeat 1 42 0 2175 110 7 3 chr4 9762689 9762981 -174525681 - AluSq SINE Alu -20 293 1 1886 164 0 22 chr4 9762990 9763302 -174525360 - AluJb SINE Alu -7 305 1 2085 85 48 4 chr4 9763506 9763802 -174524860 + AluSq SINE Alu 1 308 0 2300 107 0 0 chr4 9764379 9764670 -174523992 + AluSx SINE Alu 1 291 -21 236 253 87 105 chr4 9764879 9765156 -174523506 - L2 LINE L2 -188 3084 2813 258 132 0 73 chr4 9766192 9766260 -174522402 + (CGGGG)n Simple_repeat Simple_repeat 1 63 0 257 252 27 63 chr4 9766414 9766525 -174522137 - L2 LINE L2 -14 3258 3152 198 272 29 68 chr4 9766492 9766595 -174522067 + MIR3 SINE MIR 58 156 -52 * 2260 126 7 0 chr4 9766843 9767153 -174521509 - AluSx SINE Alu 0 312 1 207 125 0 0 chr4 9767981 9768021 -174520641 + (CCCA)n Simple_repeat Simple_repeat 2 41 0 3904 194 48 20 chr4 9768153 9768342 -174520320 + L1MB7 LINE L1 5004 5186 -998 2072 154 0 6 chr4 9768342 9768654 -174520008 + AluJb SINE Alu 1 310 -2 3904 194 48 20 chr4 9768654 9769124 -174519538 + L1MB7 LINE L1 5186 5641 -543 2395 107 0 0 chr4 9769124 9769434 -174519228 + AluSg SINE Alu 1 310 0 3904 194 48 20 chr4 9769434 9769922 -174518740 + L1MB7 LINE L1 5641 6183 -1 2355 97 7 0 chr4 9769925 9770214 -174518448 - AluSx SINE Alu -21 291 1 2247 107 13 0 chr4 9770222 9770520 -174518142 - AluSq SINE Alu -11 302 1 630 246 75 0 chr4 9770535 9770815 -174517847 + L1M4 LINE L1 3030 3330 -2816 547 231 31 0 chr4 9771294 9771424 -174517238 + MLT1C-int LTR MaLR 1238 1371 0 765 199 65 15 chr4 9771424 9771625 -174517037 + MLT1C LTR MaLR 1 211 -256 2353 175 29 13 chr4 9771653 9772109 -174516553 - MLT1C LTR MaLR 0 467 5 2791 194 9 5 chr4 9772399 9772955 -174515707 - L1MB3 LINE L1 0 6183 5626 231 217 0 0 chr4 9773472 9773532 -174515130 + (CA)n Simple_repeat Simple_repeat 1 60 0 2426 89 3 19 chr4 9774213 9774527 -174514135 - AluSq SINE Alu -4 309 1 308 159 0 43 chr4 9775296 9775365 -174513297 - MLT1F1 LTR MaLR 0 567 502 455 310 108 8 chr4 9775365 9775750 -174512912 - L1MB3 LINE L1 -657 5507 5083 410 119 0 0 chr4 9775752 9775811 -174512851 + AluS SINE Alu 2 60 -251 1411 139 5 14 chr4 9775854 9776069 -174512593 + AluSg/x SINE Alu 66 278 -32 1021 104 6 6 chr4 9776071 9776234 -174512428 + (GAAA)n Simple_repeat Simple_repeat 2 164 0 479 309 14 34 chr4 9776234 9776441 -174512221 - L1MB3 LINE L1 -1059 5087 4885 236 307 61 18 chr4 9776567 9776730 -174511932 + L1MC/D LINE L1 5720 5889 -1919 2382 101 3 0 chr4 9776732 9777040 -174511622 + AluSq SINE Alu 1 309 -4 2156 98 7 18 chr4 9777042 9777376 -174511286 + AluSq SINE Alu 1 331 0 376 255 35 41 chr4 9777761 9777906 -174510756 - L1ME4a LINE L1 -12 6109 5966 3829 80 51 0 chr4 9778053 9778580 -174510082 + MER41A LTR ERV1 1 554 0 267 119 24 0 chr4 9778580 9778622 -174510040 + MER41A-int LTR ERV1 1 43 -5903 1924 111 95 47 chr4 9778665 9779128 -174509534 + MER41A-int LTR ERV1 1 310 -5642 7553 141 202 32 chr4 9779149 9780764 -174507898 + MER41A-int LTR ERV1 129 2017 -3929 334 59 59 0 chr4 9780760 9780811 -174507851 + MER41A-int LTR ERV1 2167 2220 -3726 * 3128 128 55 43 chr4 9780807 9781214 -174507448 + MER41A-int LTR ERV1 3355 3755 -4061 2288 112 0 3 chr4 9781214 9781509 -174507153 + AluSg SINE Alu 1 294 -16 3128 128 55 43 chr4 9781509 9781612 -174507050 + MER41A-int LTR ERV1 3755 3855 -3961 2202 126 7 0 chr4 9781612 9781913 -174506749 + AluSq SINE Alu 1 303 -10 3128 128 55 43 chr4 9781913 9781941 -174506721 + MER41A-int LTR ERV1 3855 3881 -3935 2195 122 0 7 chr4 9781941 9782237 -174506425 + AluSx SINE Alu 1 294 -18 3128 128 55 43 chr4 9782237 9782618 -174506044 + MER41A-int LTR ERV1 3881 4417 -3399 11453 85 32 26 chr4 9782652 9783276 -174505386 + MER41A-int LTR ERV1 4191 4810 -1136 1978 167 0 0 chr4 9783276 9783570 -174505092 + AluSx SINE Alu 1 294 -18 11453 85 32 26 chr4 9783570 9784689 -174503973 + MER41A-int LTR ERV1 4810 5944 -2 3792 85 43 0 chr4 9784689 9785220 -174503442 + MER41A LTR ERV1 1 554 0 948 108 6 78 chr4 9785656 9785823 -174502839 + FRAM SINE Alu 1 40 0 815 223 54 0 chr4 9785848 9786032 -174502630 + MER58A DNA MER1_type 3 196 -28 353 274 152 22 chr4 9786246 9786516 -174502146 + LTR16A LTR ERVL 146 450 0 533 300 15 45 chr4 9786539 9786806 -174501856 - L2 LINE L2 -528 2786 2528 2229 95 3 0 chr4 9786897 9787247 -174501415 + AluSx SINE Alu 1 351 0 1229 214 137 51 chr4 9787457 9787947 -174500715 - LTR55 LTR ERV -16 532 1 371 321 70 12 chr4 9787948 9788291 -174500371 + L1 LINE L1 4288 4650 -1496 261 169 31 31 chr4 9788370 9788435 -174500227 + L1ME LINE L1 5714 5778 -343 860 172 0 0 chr4 9788462 9788596 -174500066 + AluJ SINE Alu 3 136 -176 6529 86 1 2 chr4 9788603 9790412 -174498250 + L1PA10 LINE L1 4352 6168 0 195 184 0 0 chr4 9790480 9790518 -174498144 + A-rich Low_complexity Low_complexity 1 38 0 2035 124 3 23 chr4 9790522 9790828 -174497834 + AluSg SINE Alu 1 300 -10 1996 125 45 14 chr4 9790830 9791117 -174497545 + AluSx SINE Alu 1 296 -16 28 29 0 0 chr4 9791117 9791152 -174497510 + AT_rich Low_complexity Low_complexity 1 35 0 1195 160 0 5 chr4 9791152 9791340 -174497322 + AluJ SINE Alu 117 303 -9 225 302 62 10 chr4 9792765 9792861 -174495801 - MLT1K LTR MaLR -346 242 142 205 196 0 22 chr4 9793089 9793135 -174495527 + (CCA)n Simple_repeat Simple_repeat 1 45 0 210 329 31 12 chr4 9793413 9793574 -174495088 + (CAGGG)n Simple_repeat Simple_repeat 5 168 0 1761 114 144 0 chr4 9794330 9794594 -174494068 + AluSx SINE Alu 1 302 0 1027 242 56 31 chr4 9795102 9795512 -174493150 + MLT1D LTR MaLR 35 493 -12 294 262 58 29 chr4 9795570 9795673 -174492989 + MIR SINE MIR 47 152 -110 977 238 188 18 chr4 9795826 9796225 -174492437 + MLT1J LTR MaLR 13 479 -32 235 219 0 47 chr4 9797563 9797627 -174491035 + MIR SINE MIR 136 196 -66 1234 270 100 37 chr4 9797628 9798110 -174490552 - MLT1E3 LTR MaLR -112 512 1 181 213 21 0 chr4 9798315 9798362 -174490300 + MIR SINE MIR 87 134 -74 2095 74 0 40 chr4 9799111 9799443 -174489219 - AluSx SINE Alu 0 320 1 1939 136 3 3 chr4 9799471 9799779 -174488883 + AluSx SINE Alu 1 308 -4 392 274 83 43 chr4 9799790 9800210 -174488452 - L1MC5 LINE L1 -50 7911 7475 26 64 0 0 chr4 9801340 9801387 -174487275 + GC_rich Low_complexity Low_complexity 1 47 0 279 291 139 10 chr4 9803264 9803495 -174485167 - L1MC5 LINE L1 -421 5821 5674 1899 58 0 19 chr4 9803602 9803861 -174484801 + AluY SINE Alu 45 298 -13 2135 89 3 20 chr4 9804170 9804474 -174484188 - AluSp SINE Alu -5 308 10 809 181 29 23 chr4 9804736 9804907 -174483755 + AluJo SINE Alu 117 288 -24 1532 137 129 0 chr4 9804917 9805180 -174483482 + AluSx SINE Alu 1 297 -15 213 108 0 0 chr4 9805191 9805228 -174483434 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 1762 156 31 0 chr4 9806330 9806619 -174482043 + AluJb SINE Alu 1 298 -14 2276 64 0 17 chr4 9806904 9807199 -174481463 + AluY SINE Alu 1 290 -21 237 33 0 0 chr4 9807200 9807230 -174481432 + (TA)n Simple_repeat Simple_repeat 2 31 0 211 306 124 16 chr4 9807712 9807833 -174480829 - MIR SINE MIR -116 146 13 472 332 142 0 chr4 9807975 9808270 -174480392 + L2 LINE L2 1996 2332 -982 23 0 0 0 chr4 9809618 9809641 -174479021 + AT_rich Low_complexity Low_complexity 1 23 0 334 192 55 0 chr4 9810495 9810568 -174478094 - MER46A DNA MER2_type -1 235 159 1060 167 171 42 chr4 9810568 9810855 -174477807 - MER7A DNA MER2_type -1 345 24 736 160 146 7 chr4 9810870 9811014 -174477648 - MER46A DNA MER2_type -72 164 1 2158 109 0 13 chr4 9811295 9811607 -174477055 + AluSq SINE Alu 1 308 -5 2340 70 0 0 chr4 9811932 9812217 -174476445 - AluSc SINE Alu -22 287 3 24 32 0 0 chr4 9812600 9812631 -174476031 + AT_rich Low_complexity Low_complexity 1 31 0 597 213 107 6 chr4 9812695 9812864 -174475798 - MER5A DNA MER1_type -3 186 1 307 290 32 11 chr4 9815869 9815962 -174472700 - MIR SINE MIR -63 145 51 227 228 101 13 chr4 9817062 9817141 -174471521 + MIR SINE MIR 63 148 -60 2526 52 0 0 chr4 9817829 9818137 -174470525 + AluY SINE Alu 1 308 -3 184 351 77 24 chr4 9818657 9818825 -174469837 - MIR SINE MIR -49 213 37 2061 196 102 35 chr4 9820314 9820371 -174468291 + L1MB3 LINE L1 5564 5616 -567 1850 121 15 0 chr4 9820371 9820636 -174468026 + AluJb SINE Alu 26 294 -18 2061 196 102 35 chr4 9820636 9821156 -174467506 + L1MB3 LINE L1 5616 6180 -3 21 0 0 0 chr4 9821158 9821179 -174467483 + AT_rich Low_complexity Low_complexity 1 21 0 522 241 106 6 chr4 9821216 9821386 -174467276 + MER5A DNA MER1_type 1 187 -2 324 354 73 6 chr4 9823159 9823323 -174465339 + MIR SINE MIR 10 184 -78 188 283 50 17 chr4 9823749 9823809 -174464853 + MER5A DNA MER1_type 128 189 0 199 196 22 43 chr4 9823919 9823965 -174464697 + MIR SINE MIR 2 46 -216 220 304 147 10 chr4 9824074 9824176 -174464486 - L2 LINE L2 -251 3062 2947 191 400 100 5 chr4 9824275 9824495 -174464167 - L2 LINE L2 -604 2710 2470 246 271 42 0 chr4 9825613 9825709 -174462953 + MIR SINE MIR 29 128 -134 231 123 15 77 chr4 9826174 9826304 -174462358 + (CCG)n Simple_repeat Simple_repeat 2 123 0 236 213 25 41 chr4 9826366 9826488 -174462174 + (CCG)n Simple_repeat Simple_repeat 2 121 0 238 320 0 0 chr4 9827279 9827354 -174461308 + G-rich Low_complexity Low_complexity 2 76 0 2331 63 0 16 chr4 9828955 9829258 -174459404 + AluY SINE Alu 1 298 -13 452 105 0 26 chr4 9829729 9829805 -174458857 - Alu SINE Alu -2 308 235 6781 189 16 37 chr4 9829805 9831114 -174457548 + SVA Other Other 104 1385 -1 5535 210 103 41 chr4 9831224 9831702 -174456960 + L1ME1 LINE L1 2093 2540 -4000 1538 187 35 7 chr4 9831702 9831991 -174456671 + AluJo SINE Alu 1 297 -15 5535 210 103 41 chr4 9831991 9833073 -174455589 + L1ME1 LINE L1 2540 3553 -2987 2395 63 0 0 chr4 9833073 9833372 -174455290 - AluY SINE Alu -12 299 1 2073 133 0 0 chr4 9833376 9833677 -174454985 - AluSx SINE Alu -6 306 6 5535 210 103 41 chr4 9833677 9834378 -174454284 + L1ME1 LINE L1 3555 4536 -2004 1840 230 105 14 chr4 9834375 9834944 -174453718 + L1ME1 LINE L1 5922 6542 -18 * 370 254 148 28 chr4 9834981 9835123 -174453539 + L1MC/D LINE L1 5612 5770 -2038 1568 78 207 8 chr4 9835387 9835629 -174453033 - AluSg1 SINE Alu -19 290 1 27 0 0 0 chr4 9835629 9835656 -174453006 + AT_rich Low_complexity Low_complexity 1 27 0 252 362 0 29 chr4 9836500 9836605 -174452057 + MIR SINE MIR 29 130 -132 551 280 176 3 chr4 9837422 9837758 -174450904 - L1MC4 LINE L1 -89 7953 7560 947 187 101 86 chr4 9837760 9838177 -174450485 - LTR37B LTR ERV1 -45 423 1 978 256 140 47 chr4 9838243 9838836 -174449826 - L1ME1 LINE L1 -9 6157 5466 21 0 0 0 chr4 9839564 9839585 -174449077 + GC_rich Low_complexity Low_complexity 1 21 0 822 155 99 6 chr4 9841240 9841401 -174447261 - FRAM SINE Alu -1 175 1 2185 95 14 0 chr4 9842528 9842823 -174445839 + AluSx SINE Alu 1 299 -13 350 233 33 42 chr4 9844514 9844634 -174444028 - MIR SINE MIR -116 146 28 367 259 123 0 chr4 9844732 9844872 -174443790 + MIR SINE MIR 58 216 -46 2230 111 0 0 chr4 9846089 9846377 -174442285 + AluSx SINE Alu 1 288 -24 2101 101 6 54 chr4 9846928 9847244 -174441418 + AluSq SINE Alu 1 301 -12 2269 108 0 7 chr4 9847866 9848171 -174440491 - AluSc SINE Alu -6 303 1 2397 56 3 3 chr4 9848200 9848484 -174440178 - AluY SINE Alu -16 295 12 1629 60 0 0 chr4 9848920 9849137 -174439525 + GSAT Satellite centromeric 1 217 0 754 123 13 175 chr4 9849372 9849600 -174439062 + 7SK RNA RNA 1 191 -2 2370 90 3 0 chr4 9849704 9850003 -174438659 + AluSx SINE Alu 1 300 -12 1784 159 68 3 chr4 9850011 9850364 -174438298 + L1MB3 LINE L1 5775 6150 -33 2196 108 31 0 chr4 9850448 9850736 -174437926 + AluSg SINE Alu 1 297 -13 429 273 46 41 chr4 9850749 9850892 -174437770 + L1ME3A LINE L1 5959 6105 -65 2346 110 0 0 chr4 9850892 9851200 -174437462 - AluSx SINE Alu -4 308 1 429 273 46 41 chr4 9851200 9851250 -174437412 + L1ME3A LINE L1 6105 6153 -17 216 290 195 6 chr4 9851681 9851850 -174436812 + L2 LINE L2 2558 2758 -556 192 355 11 32 chr4 9852001 9852094 -174436568 + L2 LINE L2 2928 3018 -254 360 278 102 24 chr4 9852678 9852883 -174435779 - MIR SINE MIR -34 228 8 202 275 110 28 chr4 9853363 9853472 -174435190 + L2 LINE L2 3150 3267 -5 197 318 136 45 chr4 9855176 9855374 -174433288 - MIR SINE MIR -26 236 21 1907 146 3 23 chr4 9856082 9856384 -174432278 + AluSx SINE Alu 4 299 -13 2308 111 0 13 chr4 9857478 9857614 -174431048 + AluSx SINE Alu 1 137 -175 2246 112 0 3 chr4 9857614 9857910 -174430752 + AluSg SINE Alu 1 295 -15 2308 111 0 13 chr4 9857910 9858080 -174430582 + AluSx SINE Alu 137 303 -9 691 191 37 0 chr4 9858419 9858555 -174430107 + FLAM_C SINE Alu 2 142 -1 207 0 0 0 chr4 9858637 9858660 -174430002 + (TG)n Simple_repeat Simple_repeat 2 24 0 232 269 147 9 chr4 9860339 9860455 -174428207 + MIR SINE MIR 45 177 -69 2423 80 7 0 chr4 9860775 9861076 -174427586 - AluSq SINE Alu -10 303 1 351 270 81 9 chr4 9863754 9863865 -174424797 - MIR SINE MIR -72 136 18 262 0 53 0 chr4 9863901 9863939 -174424723 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 2038 125 0 4 chr4 9863944 9864223 -174424439 - AluSx SINE Alu -34 278 1 2403 53 13 20 chr4 9864384 9864686 -174423976 + AluY SINE Alu 1 300 -11 466 304 67 17 chr4 9864706 9864946 -174423716 + L1ME LINE L1 5532 5783 -338 25 31 0 0 chr4 9865329 9865361 -174423301 + AT_rich Low_complexity Low_complexity 1 32 0 524 282 73 10 chr4 9865514 9865720 -174422942 - MER20 DNA MER1_type 0 219 1 2612 40 0 20 chr4 9866109 9866413 -174422249 - AluY SINE Alu -13 298 1 332 330 51 25 chr4 9866508 9866705 -174421957 + MIR SINE MIR 59 260 -2 419 282 38 72 chr4 9868928 9869190 -174419472 + MER112 DNA MER1_type 2 254 -2 352 318 0 80 chr4 9869339 9869383 -174419279 - MIR3 SINE MIR -50 158 112 2222 124 3 0 chr4 9869383 9869689 -174418973 + AluSx SINE Alu 1 307 -5 352 318 0 80 chr4 9869689 9869795 -174418867 - MIR3 SINE MIR -96 112 20 2226 100 7 0 chr4 9871383 9871684 -174416978 - AluY SINE Alu -8 303 1 925 155 20 0 chr4 9873158 9873341 -174415321 - AluSg/x SINE Alu 0 318 133 263 326 10 10 chr4 9873341 9873439 -174415223 + MIR SINE MIR 109 206 -56 1905 182 3 0 chr4 9873788 9874090 -174414572 + AluJb SINE Alu 1 303 -9 27 73 0 0 chr4 9874131 9874186 -174414476 + AT_rich Low_complexity Low_complexity 1 55 0 2351 104 0 10 chr4 9875445 9875754 -174412908 + AluSg1 SINE Alu 1 306 -3 397 199 202 12 chr4 9878485 9878609 -174410053 - AluJb SINE Alu -8 294 174 660 256 105 77 chr4 9878627 9879085 -174409577 - L1MC5 LINE L1 -30 7931 7487 2133 158 0 0 chr4 9879085 9879395 -174409267 + AluJb SINE Alu 1 310 -2 2182 114 0 14 chr4 9879401 9879698 -174408964 + AluSg SINE Alu 1 293 -17 660 256 105 77 chr4 9879698 9879728 -174408934 - L1MC5 LINE L1 -478 7483 7422 494 218 17 28 chr4 9879768 9880387 -174408275 + (CA)n Simple_repeat Simple_repeat 1 612 0 266 190 16 38 chr4 9880479 9880663 -174407999 + (CA)n Simple_repeat Simple_repeat 1 180 0 2500 79 0 3 chr4 9880893 9881196 -174407466 - AluSg SINE Alu -8 302 1 1820 184 0 9 chr4 9881296 9881611 -174407051 - AluJb SINE Alu 0 312 1 2042 116 46 0 chr4 9882029 9882313 -174406349 + AluSg SINE Alu 1 297 -13 1981 104 42 21 chr4 9886412 9886699 -174401963 + AluSc SINE Alu 1 293 -16 310 330 69 12 chr4 9887794 9887967 -174400695 + MIR SINE MIR 16 198 -64 322 288 117 0 chr4 9888229 9888340 -174400322 - MIR3 SINE MIR -52 156 33 2445 93 0 0 chr4 9888480 9888780 -174399882 + AluSx SINE Alu 1 300 -12 2437 78 0 10 chr4 9889181 9889477 -174399185 + AluSg SINE Alu 1 293 -17 191 275 0 0 chr4 9889928 9889968 -174398694 + L2 LINE L2 3262 3301 -12 314 280 110 8 chr4 9890000 9890118 -174398544 - L2 LINE L2 0 3272 3143 1586 185 10 27 chr4 9890850 9891142 -174397520 - AluJb SINE Alu -25 287 1 2415 73 0 16 chr4 9891277 9891590 -174397072 + AluSg SINE Alu 1 308 -2 2119 79 0 18 chr4 9892061 9892338 -174396324 - AluY SINE Alu -13 298 27 302 388 91 19 chr4 9893234 9893597 -174395065 + L1MEd LINE L1 802 1190 -4929 831 75 0 0 chr4 9893610 9893730 -174394932 + (TCCA)n Simple_repeat Simple_repeat 1 120 0 382 287 16 25 chr4 9893730 9893852 -174394810 - L2 LINE L2 -13 3300 3180 372 248 90 8 chr4 9894713 9894846 -174393816 + MLT1J2 LTR MaLR 67 210 -240 404 211 22 0 chr4 9894938 9895028 -174393634 + MLT1I LTR MaLR 317 408 -1 231 342 40 20 chr4 9895209 9895358 -174393304 + L2 LINE L2 2636 2787 -527 241 250 65 9 chr4 9895619 9895727 -174392935 + MER103 DNA DNA 6 119 -47 189 238 0 0 chr4 9895814 9895856 -174392806 - MIR SINE MIR -55 153 112 477 264 48 0 chr4 9896178 9896303 -174392359 - MIR SINE MIR -36 226 96 963 213 54 77 chr4 9896468 9896778 -174391884 + MLT1A1 LTR MaLR 1 304 -61 1664 171 0 49 chr4 9896778 9897083 -174391579 - AluJb SINE Alu -22 290 1 963 213 54 77 chr4 9897083 9897125 -174391537 + MLT1A1 LTR MaLR 304 345 -20 436 306 19 32 chr4 9897672 9897829 -174390833 + MIR SINE MIR 9 163 -99 236 360 56 8 chr4 9897940 9898065 -174390597 + L2 LINE L2 3103 3233 -39 613 219 27 27 chr4 9898400 9898546 -174390116 + L2 LINE L2 3167 3312 -1 427 282 63 14 chr4 9899495 9899637 -174389025 - MER5B DNA MER1_type -16 162 14 566 208 101 0 chr4 9899658 9899807 -174388855 - MER5A DNA MER1_type 0 189 26 193 331 39 47 chr4 9899786 9899913 -174388749 - MIR SINE MIR -96 166 41 * 410 288 88 12 chr4 9899890 9900060 -174388602 + MIR SINE MIR 80 262 0 180 367 60 60 chr4 9900096 9900295 -174388367 + L2 LINE L2 3032 3230 -42 337 280 150 24 chr4 9900768 9900975 -174387687 + L2 LINE L2 2553 2785 -529 264 308 98 49 chr4 9900972 9901258 -174387404 + L2 LINE L2 2921 3220 -52 * 457 309 53 0 chr4 9901665 9901817 -174386845 + MIR SINE MIR 30 189 -73 553 172 15 20 chr4 9901926 9902318 -174386344 + CT-rich Low_complexity Low_complexity 1 390 0 1177 188 64 38 chr4 9902318 9902584 -174386078 - AluJb SINE Alu -39 273 1 267 278 121 52 chr4 9902640 9902813 -174385849 - MIR3 SINE MIR -20 188 4 23 92 0 0 chr4 9904122 9904187 -174384475 + GC_rich Low_complexity Low_complexity 1 65 0 27 85 0 11 chr4 9904365 9904434 -174384228 + GC_rich Low_complexity Low_complexity 1 70 -23 198 71 0 0 chr4 9904434 9904462 -174384200 + (CTG)n Simple_repeat Simple_repeat 1 28 0 27 85 0 11 chr4 9904462 9904486 -174384176 + GC_rich Low_complexity Low_complexity 70 93 0 198 0 0 0 chr4 9906858 9906880 -174381782 + (TG)n Simple_repeat Simple_repeat 2 23 0 292 74 0 37 chr4 9908284 9908338 -174380324 + (TCCCC)n Simple_repeat Simple_repeat 2 53 0 2375 158 21 8 chr4 9908659 9909044 -174379618 - MLT1B LTR MaLR 0 390 1 240 296 83 15 chr4 9909184 9909316 -174379346 - L2 LINE L2 -213 3059 2919 714 319 32 0 chr4 9909486 9909702 -174378960 + MIR SINE MIR 28 250 -12 214 360 45 0 chr4 9911769 9911880 -174376782 + L3 LINE CR1 1415 1530 -47 352 250 11 22 chr4 9912124 9912216 -174376446 + MIR3 SINE MIR 109 199 -9 247 247 49 23 chr4 9912352 9912466 -174376196 + MIR SINE MIR 41 153 -62 330 301 204 28 chr4 9912642 9912961 -174375701 - L2 LINE L2 -20 3252 2878 491 377 20 16 chr4 9914575 9914819 -174373843 - MIR SINE MIR 0 262 18 1990 121 28 0 chr4 9914832 9915114 -174373548 + AluSx SINE Alu 1 290 -22 633 99 0 0 chr4 9915128 9915209 -174373453 + AluSg/x SINE Alu 210 290 -22 633 99 0 0 chr4 9915223 9915304 -174373358 + AluSg/x SINE Alu 210 290 -22 3163 176 15 19 chr4 9915324 9915902 -174372760 - L1MB3 LINE L1 0 6183 5606 1857 164 0 7 chr4 9915902 9916200 -174372462 - AluJo SINE Alu -16 296 1 3163 176 15 19 chr4 9916200 9916216 -174372446 - L1MB3 LINE L1 -577 5606 5591 434 218 32 51 chr4 9916955 9917111 -174371551 - Charlie4 DNA MER1_type 0 1961 1809 893 234 40 4 chr4 9917143 9917395 -174371267 - Charlie4 DNA MER1_type -1667 294 34 2258 96 0 10 chr4 9917443 9917757 -174370905 + AluSx SINE Alu 1 311 -1 320 239 103 60 chr4 9917899 9918016 -174370646 + L2 LINE L2 3175 3296 -17 222 37 0 0 chr4 9918511 9918538 -174370124 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 235 321 12 0 chr4 9920122 9920203 -174368459 - L2 LINE L2 -1 3271 3190 216 0 0 0 chr4 9920318 9920342 -174368320 + (GCTTG)n Simple_repeat Simple_repeat 3 26 0 185 400 94 12 chr4 9920713 9920883 -174367779 + MIR SINE MIR 60 243 -19 1677 166 11 0 chr4 9921984 9922261 -174366401 - AluJo SINE Alu -30 282 3 191 310 186 21 chr4 9922323 9922468 -174366194 + MIR SINE MIR 57 225 -37 207 69 0 0 chr4 9922896 9922925 -174365737 + (GGGA)n Simple_repeat Simple_repeat 2 30 0 1980 109 60 0 chr4 9923067 9923351 -174365311 - AluSx SINE Alu -11 301 1 867 200 23 36 chr4 9924045 9924265 -174364397 - MLT1K LTR MaLR 0 588 372 361 269 31 8 chr4 9924335 9924465 -174364197 - MLT1K LTR MaLR -331 257 125 412 260 32 8 chr4 9925331 9925454 -174363208 - MIR SINE MIR -63 145 20 1664 207 102 8 chr4 9925843 9926205 -174362457 + MSTD LTR MaLR 1 396 0 250 333 0 0 chr4 9926329 9926398 -174362264 - L3 LINE CR1 -101 1476 1408 4400 127 44 83 chr4 9926617 9927632 -174361030 + pTR5 LTR ERV1 729 2025 -413 364 235 10 0 chr4 9927632 9927730 -174360932 + LTR30 LTR ERV1 544 642 -80 1229 98 57 0 chr4 9927731 9927925 -174360737 + LTR12 LTR ERV1 377 581 -133 1860 214 110 2 chr4 9928071 9928524 -174360138 - MLT1D LTR MaLR 0 505 4 331 264 104 57 chr4 9930558 9930770 -174357892 + L2 LINE L2 2747 2968 -346 270 300 25 0 chr4 9931048 9931128 -174357534 - MER5B DNA MER1_type -43 135 54 2568 90 33 11 chr4 9931147 9931514 -174357148 - THE1C LTR MaLR 0 375 1 219 315 41 68 chr4 9932944 9933090 -174355572 - MER5A DNA MER1_type -1 188 47 * 232 287 52 73 chr4 9932966 9933102 -174355560 + MER5A DNA MER1_type 35 167 -22 392 323 138 4 chr4 9933303 9933535 -174355127 - L2 LINE L2 -9 3263 3001 413 300 45 35 chr4 9933536 9933736 -174354926 - L2 LINE L2 -4 3309 3108 1478 246 130 6 chr4 9933847 9934354 -174354308 + L1MB8 LINE L1 5603 6172 -6 490 367 72 30 chr4 9934989 9935017 -174353645 - L1ME4a LINE L1 -196 5925 5900 237 33 0 0 chr4 9935017 9935047 -174353615 + (CA)n Simple_repeat Simple_repeat 1 30 0 490 367 72 30 chr4 9935047 9935323 -174353339 - L1ME4a LINE L1 -221 5900 5608 231 297 148 16 chr4 9935543 9935671 -174352991 + MIR SINE MIR 28 172 -90 871 135 135 6 chr4 9936257 9936435 -174352227 - MSTA LTR MaLR -227 201 1 257 333 0 0 chr4 9936758 9936842 -174351820 + L2 LINE L2 2987 3070 -202 289 304 72 16 chr4 9936975 9937100 -174351562 + L2 LINE L2 3134 3265 -7 638 304 65 0 chr4 9937496 9937743 -174350919 - MLT1G LTR MaLR -316 274 12 318 292 205 11 chr4 9937868 9938053 -174350609 - MIR SINE MIR -8 254 34 1335 196 108 25 chr4 9939740 9940093 -174348569 - MLT1B LTR MaLR -8 382 1 307 130 0 14 chr4 9942571 9942632 -174346030 - MLT2D LTR ERVL 0 414 367 1262 205 28 75 chr4 9942701 9943103 -174345559 - MLT2D LTR ERVL -40 480 1 390 91 0 0 chr4 9943151 9943206 -174345456 + (TCCA)n Simple_repeat Simple_repeat 4 58 0 195 260 20 0 chr4 9943209 9943259 -174345403 - L2 LINE L2 -1 3312 3262 206 297 55 61 chr4 9943316 9943481 -174345181 - L2 LINE L2 -162 3110 2947 349 339 60 12 chr4 9945348 9945516 -174343146 + MIR SINE MIR 36 211 -51 247 176 20 0 chr4 9945534 9945585 -174343077 + MIR3 SINE MIR 105 156 -52 209 273 0 0 chr4 9946349 9946393 -174342269 + L2 LINE L2 3215 3258 -14 398 308 0 0 chr4 9946979 9947086 -174341576 - MIR SINE MIR -75 187 81 266 222 86 37 chr4 9947611 9947692 -174340970 - L2 LINE L2 -49 3264 3180 579 284 72 18 chr4 9947777 9948111 -174340551 - L2 LINE L2 -143 3170 2819 2156 121 3 0 chr4 9948216 9948522 -174340140 - AluSx SINE Alu -5 307 1 228 67 0 0 chr4 9949169 9949199 -174339463 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 285 196 0 0 chr4 9949312 9949363 -174339299 + MIR SINE MIR 104 154 -108 192 231 0 0 chr4 9950187 9950239 -174338423 + (TG)n Simple_repeat Simple_repeat 1 52 0 206 301 43 21 chr4 9951689 9951782 -174336880 + MIR SINE MIR 45 139 -69 341 148 0 0 chr4 9952508 9952569 -174336093 - MER53 DNA DNA -2 187 127 2126 85 0 14 chr4 9952569 9952870 -174335792 - AluSq SINE Alu 0 307 11 257 303 28 56 chr4 9953141 9953283 -174335379 - L2 LINE L2 -18 3295 3158 1640 164 20 30 chr4 9953839 9954138 -174334524 - AluJo SINE Alu -10 302 7 656 252 86 13 chr4 9955018 9955434 -174333228 - MER68 LTR ERV1 -9 553 72 413 294 94 25 chr4 9957104 9957264 -174331398 + MIR SINE MIR 20 190 -72 326 247 27 0 chr4 9957481 9957554 -174331108 - MIR SINE MIR -56 152 78 477 242 61 15 chr4 9960094 9960226 -174328436 + MIR SINE MIR 77 214 -48 241 298 70 9 chr4 9960271 9960385 -174328277 + MIR3 SINE MIR 83 203 -5 869 231 141 27 chr4 9960725 9961241 -174327421 - MLT1G LTR MaLR 0 577 19 532 291 51 15 chr4 9961258 9961454 -174327208 - MIR SINE MIR -12 250 48 2033 121 0 3 chr4 9961663 9961981 -174326681 + AluSx SINE Alu 1 317 0 368 296 38 8 chr4 9962670 9962802 -174325860 + MIR3 SINE MIR 22 157 -51 476 283 0 50 chr4 9962807 9962987 -174325675 - MLT1K LTR MaLR -16 572 402 264 342 51 25 chr4 9963214 9963372 -174325290 + MIR SINE MIR 5 166 -96 273 284 32 65 chr4 9963375 9963530 -174325132 - MLT1J LTR MaLR -231 280 131 310 247 26 13 chr4 9964161 9964238 -174324424 + L1ME4a LINE L1 6044 6121 0 310 281 9 53 chr4 9964340 9964454 -174324208 + MER94 DNA DNA 3 111 -23 3412 175 27 2 chr4 9965619 9966371 -174322291 + L1PB4 LINE L1 5381 6164 -2 219 366 59 0 chr4 9966434 9966535 -174322127 + MIR SINE MIR 75 181 -81 185 229 213 0 chr4 9966590 9966651 -174322011 - MER5A DNA MER1_type -84 105 32 249 257 0 0 chr4 9966713 9966783 -174321879 + (TG)n Simple_repeat Simple_repeat 1 70 0 316 278 201 16 chr4 9966843 9967037 -174321625 - L2 LINE L2 -42 3230 3001 2237 86 7 0 chr4 9967894 9968184 -174320478 - AluSg SINE Alu -13 297 6 293 209 118 18 chr4 9968185 9968295 -174320367 + MER113 DNA MER1_type? 99 219 -302 182 146 98 24 chr4 9968572 9968613 -174320049 - L3 LINE CR1 -127 1450 1407 254 324 152 7 chr4 9969273 9969418 -174319244 + MIR SINE MIR 17 182 -80 212 362 98 6 chr4 9969559 9969733 -174318929 - L3 LINE CR1 -196 1381 1192 2359 111 43 25 chr4 9970310 9970678 -174317984 + THE1C LTR MaLR 1 375 0 363 356 132 24 chr4 9971692 9971942 -174316720 + L1ME4a LINE L1 5687 5963 -158 315 272 60 54 chr4 9972291 9972390 -174316272 + L1ME4a LINE L1 5936 6038 -83 2229 114 0 0 chr4 9972390 9972697 -174315965 - AluSx SINE Alu -5 307 1 315 272 60 54 chr4 9972697 9972781 -174315881 + L1ME4a LINE L1 6038 6120 -1 365 258 138 13 chr4 9972976 9973135 -174315527 - MIR SINE MIR -31 231 53 1119 243 57 33 chr4 9974744 9974790 -174313872 + L1M4 LINE L1 4895 4938 -1208 774 32 0 0 chr4 9974790 9974883 -174313779 + (GAAA)n Simple_repeat Simple_repeat 3 95 0 1119 243 57 33 chr4 9974883 9975200 -174313462 + L1M4 LINE L1 4938 5246 -900 2254 102 3 13 chr4 9975200 9975514 -174313148 + AluSx SINE Alu 1 311 -1 180 0 0 0 chr4 9975516 9975536 -174313126 + (TA)n Simple_repeat Simple_repeat 1 20 0 1119 243 57 33 chr4 9975536 9975625 -174313037 + L1M4 LINE L1 5246 5362 -784 200 360 27 36 chr4 9975991 9976102 -174312560 + MIR SINE MIR 35 144 -118 282 301 109 65 chr4 9976775 9977177 -174311485 + L2 LINE L2 2810 3229 -43 216 192 19 39 chr4 9977273 9977325 -174311337 - L2 LINE L2 -14 3258 3208 250 286 134 9 chr4 9977575 9977687 -174310975 - MER96 DNA MER1_type? -39 136 11 189 299 41 62 chr4 9978222 9978319 -174310343 + MIR3 SINE MIR 88 182 -26 316 309 158 29 chr4 9978791 9978993 -174309669 - MIR SINE MIR -43 219 3 196 231 0 0 chr4 9979687 9979726 -174308936 + L2 LINE L2 3263 3301 -12 222 362 51 22 chr4 9979834 9979972 -174308690 + MIR3 SINE MIR 5 146 -62 334 220 66 0 chr4 9980043 9980134 -174308528 + MER5A DNA MER1_type 10 106 -83 187 267 287 0 chr4 9980068 9980169 -174308493 - MER5A DNA MER1_type -24 165 36 * 190 332 72 9 chr4 9980574 9980797 -174307865 + L2 LINE L2 2738 2974 -340 211 336 60 0 chr4 9980834 9980950 -174307712 + L2 LINE L2 3141 3263 -9 182 331 83 53 chr4 9980979 9981148 -174307514 + MIR SINE MIR 45 218 -44 1583 202 80 36 chr4 9981456 9981871 -174306791 + MLT1D LTR MaLR 1 433 -72 532 216 16 0 chr4 9981876 9982001 -174306661 - MER47A DNA MER2_type 0 366 240 530 232 0 0 chr4 9982002 9982114 -174306548 - MER47A DNA MER2_type -254 112 1 351 203 0 0 chr4 9982114 9982183 -174306479 + MLT1D LTR MaLR 437 505 0 417 290 36 67 chr4 9983318 9983475 -174305187 + MIR SINE MIR 45 208 -54 2120 114 0 31 chr4 9983475 9983792 -174304870 + AluSx SINE Alu 1 307 -5 417 290 36 67 chr4 9983792 9983828 -174304834 + MIR SINE MIR 208 244 -18 743 263 91 45 chr4 9984299 9984695 -174303967 + MLT1C LTR MaLR 54 467 0 220 246 87 43 chr4 9985702 9985840 -174302822 + L2 LINE L2 2921 3064 -208 205 378 64 13 chr4 9986050 9986206 -174302456 - L3 LINE CR1 -7 1570 1407 254 284 28 57 chr4 9986632 9986773 -174301889 - MIR SINE MIR -90 172 36 944 135 12 0 chr4 9986884 9987054 -174301608 + (TTCA)n Simple_repeat Simple_repeat 2 173 0 321 274 186 0 chr4 9987065 9987167 -174301495 - L2 LINE L2 -15 3257 3137 220 271 82 16 chr4 9987240 9987362 -174301300 - L2 LINE L2 -1469 1845 1716 * 233 241 0 0 chr4 9987356 9987410 -174301252 + L2 LINE L2 3218 3271 -1 201 262 153 38 chr4 9987704 9987887 -174300775 - L2 LINE L2 -411 2903 2700 372 324 33 2 chr4 9988221 9988426 -174300236 + MIR3 SINE MIR 1 259 -3 308 280 136 8 chr4 9988555 9988680 -174299982 - MIR3 SINE MIR -32 176 36 730 254 149 11 chr4 9988686 9988961 -174299701 - MLT1C LTR MaLR -21 446 134 2289 95 0 0 chr4 9988995 9989291 -174299371 - AluSq SINE Alu -17 296 1 337 273 97 48 chr4 9990513 9990678 -174297984 - MIR3 SINE MIR -22 186 14 575 232 53 0 chr4 9992333 9992484 -174296178 - MLT1B LTR MaLR 0 390 232 235 200 0 0 chr4 9992504 9992549 -174296113 + G-rich Low_complexity Low_complexity 1 45 0 206 23 93 0 chr4 9992550 9992593 -174296069 + GA-rich Low_complexity Low_complexity 2 48 0 483 226 82 7 chr4 9992594 9992740 -174295922 - MLT1B LTR MaLR -205 185 29 196 178 22 0 chr4 9992823 9992868 -174295794 + L2 LINE L2 3014 3059 -213 391 296 254 0 chr4 9993162 9993442 -174295220 + L2 LINE L2 2912 3262 -10 188 268 36 0 chr4 9993455 9993511 -174295151 + L2 LINE L2 3207 3264 -8 289 357 56 16 chr4 9994492 9994618 -174294044 - MIR3 SINE MIR -63 145 15 210 310 17 0 chr4 9994626 9994684 -174293978 + (TG)n Simple_repeat Simple_repeat 2 60 0 237 33 0 0 chr4 9994749 9994779 -174293883 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 323 328 156 25 chr4 9994791 9995283 -174293379 - L2 LINE L2 -25 3247 2682 183 325 12 62 chr4 9995748 9995828 -174292834 - MIR SINE MIR -123 139 64 2418 66 0 3 chr4 9996980 9997281 -174291381 + AluY SINE Alu 1 300 -11 386 139 14 0 chr4 9998601 9998673 -174289989 + CT-rich Low_complexity Low_complexity 3 75 0 1352 198 38 108 chr4 9998818 9999318 -174289344 + MLT1C LTR MaLR 1 465 -2 2050 126 0 3 chr4 9999336 9999630 -174289032 - AluSx SINE Alu -15 297 5 880 317 110 23 chr4 10000564 10001195 -174287467 + L2 LINE L2 2613 3310 -3 308 250 0 33 chr4 10001812 10001904 -174286758 - HsTC2 DNA Tc2 -1809 89 1 2634 141 62 2 chr4 10003773 10004176 -174284486 - MSTA LTR MaLR 0 428 2 180 336 96 0 chr4 10006475 10006579 -174282083 + L2 LINE L2 2982 3095 -177 391 275 64 0 chr4 10007459 10007568 -174281094 - MIR SINE MIR -100 162 47 789 185 13 0 chr4 10010026 10010183 -174278479 - L1MC/D LINE L1 -699 5634 5476 320 319 21 42 chr4 10010183 10010261 -174278401 + MIR SINE MIR 118 193 -69 192 40 0 0 chr4 10010261 10010286 -174278376 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 320 319 21 42 chr4 10010286 10010351 -174278311 + MIR SINE MIR 193 258 -4 310 331 128 12 chr4 10012505 10012677 -174275985 + MIR SINE MIR 25 216 -46 196 275 12 62 chr4 10012801 10012881 -174275781 - MIR3 SINE MIR -6 202 127 377 258 129 12 chr4 10013062 10013225 -174275437 - L2 LINE L2 -257 3056 2875 931 71 20 45 chr4 10013735 10014058 -174274604 + (TGGA)n Simple_repeat Simple_repeat 1 315 0 297 51 0 0 chr4 10014070 10014109 -174274553 + (TGGA)n Simple_repeat Simple_repeat 1 39 0 224 297 203 7 chr4 10014153 10014291 -174274371 - MIR3 SINE MIR -41 167 3 22 56 0 0 chr4 10014356 10014392 -174274270 + AT_rich Low_complexity Low_complexity 1 36 0 1410 189 79 16 chr4 10015059 10015425 -174273237 - MLT1C LTR MaLR -76 391 3 214 316 13 13 chr4 10015609 10015688 -174272974 - MIR SINE MIR -117 145 67 332 298 0 10 chr4 10015785 10015889 -174272773 - MIR SINE MIR -61 147 45 283 241 60 0 chr4 10015985 10016068 -174272594 + MER81 DNA DNA 27 114 0 372 298 128 30 chr4 10016901 10017136 -174271526 + L2 LINE L2 2906 3163 -109 2261 206 27 2 chr4 10017354 10017792 -174270870 - L1MB5 LINE L1 -8 6166 5718 190 227 68 0 chr4 10017817 10017861 -174270801 - L2 LINE L2 -23 3290 3244 238 264 35 0 chr4 10017962 10018049 -174270613 + MER45 DNA AcHobo 26 115 -1466 309 357 8 16 chr4 10018946 10019075 -174269587 + MIR SINE MIR 17 144 -118 316 248 204 0 chr4 10019229 10019342 -174269320 + MIR SINE MIR 8 143 -119 180 359 39 10 chr4 10021023 10021126 -174267536 - MIR3 SINE MIR -6 202 97 194 283 19 0 chr4 10021244 10021297 -174267365 + MIR SINE MIR 90 143 -65 3144 222 34 4 chr4 10021601 10022426 -174266236 - L1M4 LINE L1 -2885 3261 2412 303 311 0 49 chr4 10022555 10022677 -174265985 + L2 LINE L2 3197 3312 -1 26 30 0 0 chr4 10022696 10022729 -174265933 + AT_rich Low_complexity Low_complexity 1 33 0 604 304 68 27 chr4 10023068 10023288 -174265374 - MIR SINE MIR -21 241 13 461 296 39 82 chr4 10023988 10024194 -174264468 - MIR SINE MIR 0 262 66 2168 113 0 3 chr4 10024200 10024510 -174264152 - AluSq SINE Alu -4 309 1 204 178 0 44 chr4 10027287 10027332 -174261330 + CT-rich Low_complexity Low_complexity 3 45 0 623 225 21 0 chr4 10027333 10027613 -174261049 + (TCCA)n Simple_repeat Simple_repeat 1 285 0 208 231 26 0 chr4 10027632 10027710 -174260952 + (TCCA)n Simple_repeat Simple_repeat 1 80 0 314 279 81 62 chr4 10027823 10027984 -174260678 + L2 LINE L2 3109 3272 0 274 303 107 0 chr4 10027990 10028112 -174260550 - MIR3 SINE MIR -45 163 29 201 265 118 0 chr4 10028598 10028666 -174259996 - MIR3 SINE MIR -41 167 92 238 273 0 0 chr4 10029163 10029218 -174259444 + L2 LINE L2 3208 3262 -10 215 299 51 26 chr4 10030118 10030235 -174258427 + MIR SINE MIR 17 136 -72 186 43 0 0 chr4 10030355 10030378 -174258284 + (GA)n Simple_repeat Simple_repeat 1 23 0 544 278 44 15 chr4 10031034 10031239 -174257423 - MLT1J2 LTR MaLR 0 450 240 553 280 113 27 chr4 10031604 10031933 -174256729 + L2 LINE L2 2828 3184 -129 1103 193 44 139 chr4 10031944 10032353 -174256309 - MLT1A2 LTR MaLR -4 370 1 347 287 130 0 chr4 10032366 10032474 -174256188 + L2 LINE L2 3191 3312 -1 397 278 98 40 chr4 10033904 10034077 -174254585 - MIR SINE MIR -12 250 68 318 257 119 9 chr4 10034354 10034463 -174254199 - L1M4 LINE L1 -3353 2793 2673 1552 204 40 3 chr4 10034486 10034678 -174253984 - AluJo SINE Alu -2 310 102 2030 134 23 7 chr4 10034678 10034985 -174253677 + AluSx SINE Alu 1 312 0 1552 204 40 3 chr4 10034985 10035091 -174253571 - AluJo SINE Alu -210 102 1 504 328 25 20 chr4 10035794 10036056 -174252606 - MIR SINE MIR 0 262 2 2035 105 0 20 chr4 10036226 10036520 -174252142 - AluJb SINE Alu -2 310 23 394 220 0 36 chr4 10037058 10037226 -174251436 + CT-rich Low_complexity Low_complexity 1 162 0 294 377 16 0 chr4 10038583 10038705 -174249957 + MIR SINE MIR 75 198 -64 205 313 47 0 chr4 10039679 10039743 -174248919 + L3 LINE CR1 1263 1329 -248 771 281 51 23 chr4 10039823 10040218 -174248444 + MER115 DNA AcHobo 29 434 -259 529 279 8 0 chr4 10042525 10042654 -174246008 - MIR SINE MIR -39 223 94 517 273 16 0 chr4 10043195 10043323 -174245339 - L2 LINE L2 -1 3271 3142 247 79 26 0 chr4 10044318 10044356 -174244306 + L2 LINE L2 2745 2783 -531 964 281 72 36 chr4 10044366 10044757 -174243905 + L2 LINE L2 2887 3291 -22 270 116 0 0 chr4 10044759 10044802 -174243860 + (TG)n Simple_repeat Simple_repeat 2 44 0 304 295 76 19 chr4 10045921 10046026 -174242636 - MIR SINE MIR -29 233 123 380 198 25 136 chr4 10046060 10046222 -174242440 - L2 LINE L2 0 3313 3170 220 263 18 0 chr4 10046321 10046378 -174242284 + CT-rich Low_complexity Low_complexity 4 61 0 2390 66 3 0 chr4 10047018 10047320 -174241342 - AluY SINE Alu -8 303 1 295 140 0 53 chr4 10049438 10049495 -174239167 - MIR SINE MIR -61 147 94 312 256 17 0 chr4 10049746 10049918 -174238744 + (TG)n Simple_repeat Simple_repeat 1 175 0 323 350 50 7 chr4 10051164 10051311 -174237351 - MIR SINE MIR -61 147 14 586 223 0 0 chr4 10052200 10052321 -174236341 - MIR SINE MIR -62 200 80 2293 262 48 39 chr4 10052911 10053855 -174234807 - L1ME1 LINE L1 -4 6162 5201 2161 123 0 3 chr4 10053855 10054164 -174234498 - AluSc SINE Alu -1 308 1 2293 262 48 39 chr4 10054164 10054284 -174234378 - L1ME1 LINE L1 -965 5201 5084 233 299 188 17 chr4 10055268 10055385 -174233277 - L2 LINE L2 0 3272 3136 255 360 72 0 chr4 10055656 10055795 -174232867 + L2 LINE L2 2608 2756 -558 2342 87 0 0 chr4 10056317 10056628 -174232034 - AluY SINE Alu 0 311 1 2042 90 34 65 chr4 10056799 10057122 -174231540 - AluSq SINE Alu 0 313 1 195 304 0 0 chr4 10057313 10057359 -174231303 + MIR SINE MIR 217 262 0 205 303 130 34 chr4 10057568 10057806 -174230856 + L2 LINE L2 2908 3168 -104 877 157 6 9 chr4 10057910 10058250 -174230412 + (TCCA)n Simple_repeat Simple_repeat 1 338 0 204 296 0 102 chr4 10058273 10058371 -174230291 - L2 LINE L2 0 3272 3185 206 298 0 0 chr4 10058528 10058575 -174230087 + MIR SINE MIR 74 120 -142 317 154 0 0 chr4 10059896 10059948 -174228714 + MLT1B LTR MaLR 22 73 -317 536 304 85 27 chr4 10060075 10060299 -174228363 - MIR SINE MIR -4 258 22 317 273 219 11 chr4 10060456 10060639 -174228023 + MIR SINE MIR 21 241 -21 1783 236 31 5 chr4 10060719 10061164 -174227498 - L1ME1 LINE L1 -5 6161 5705 608 210 105 6 chr4 10061157 10061338 -174227324 - L1MCc LINE L1 -5058 1365 1167 * 1758 176 0 29 chr4 10061412 10061718 -174226944 + AluJo SINE Alu 1 297 -15 829 161 0 0 chr4 10062010 10062147 -174226515 + AluJo SINE Alu 1 137 -175 379 262 0 0 chr4 10112824 10112927 -174175735 + L1 LINE L1 4280 4382 -1764 197 330 152 35 chr4 10112927 10113345 -174175317 - L2 LINE L2 -45 3268 2738 458 317 49 22 chr4 10115410 10115593 -174173069 - MIR SINE MIR -73 189 2 211 327 84 0 chr4 10116303 10116410 -174172252 + MIR SINE MIR 2 117 -145 223 254 0 17 chr4 10116678 10116737 -174171925 + MIR SINE MIR 95 152 -56 198 0 0 0 chr4 10116812 10116834 -174171828 + (TGAA)n Simple_repeat Simple_repeat 3 24 0 205 378 64 13 chr4 10117017 10117173 -174171489 + L3 LINE CR1 1407 1570 -7 220 246 87 43 chr4 10117383 10117521 -174171141 - L2 LINE L2 -208 3064 2921 743 263 91 45 chr4 10118528 10118924 -174169738 - MLT1C LTR MaLR 0 467 54 417 290 36 67 chr4 10119395 10119431 -174169231 - MIR SINE MIR -18 244 208 2120 114 0 31 chr4 10119431 10119748 -174168914 - AluSx SINE Alu -5 307 1 417 290 36 67 chr4 10119748 10119905 -174168757 - MIR SINE MIR -54 208 45 351 203 0 0 chr4 10121040 10121109 -174167553 - MLT1D LTR MaLR 0 505 437 530 232 0 0 chr4 10121109 10121221 -174167441 + MER47A DNA MER2_type 1 112 -254 532 216 16 0 chr4 10121222 10121347 -174167315 + MER47A DNA MER2_type 240 366 0 1583 202 80 36 chr4 10121352 10121767 -174166895 - MLT1D LTR MaLR -72 433 1 182 331 83 53 chr4 10122075 10122244 -174166418 - MIR SINE MIR -44 218 45 211 336 60 0 chr4 10122273 10122389 -174166273 - L2 LINE L2 -9 3263 3141 190 332 72 9 chr4 10122426 10122649 -174166013 - L2 LINE L2 -340 2974 2738 187 267 287 0 chr4 10123054 10123155 -174165507 + MER5A DNA MER1_type 36 165 -24 * 334 220 66 0 chr4 10123089 10123180 -174165482 - MER5A DNA MER1_type -83 106 10 222 362 51 22 chr4 10123251 10123389 -174165273 - MIR3 SINE MIR -62 146 5 196 231 0 0 chr4 10123497 10123536 -174165126 - L2 LINE L2 -12 3301 3263 316 309 158 29 chr4 10124230 10124432 -174164230 + MIR SINE MIR 3 219 -43 189 299 41 62 chr4 10124904 10125001 -174163661 - MIR3 SINE MIR -26 182 88 250 286 134 9 chr4 10125536 10125648 -174163014 + MER96 DNA MER1_type? 11 136 -39 216 192 19 39 chr4 10125898 10125950 -174162712 + L2 LINE L2 3208 3258 -14 282 301 109 65 chr4 10126046 10126448 -174162214 - L2 LINE L2 -43 3229 2810 200 360 27 36 chr4 10127121 10127232 -174161430 - MIR SINE MIR -118 144 35 310 331 128 12 chr4 10128260 10128432 -174160230 + MIR SINE MIR 25 216 -46 196 275 12 62 chr4 10128556 10128636 -174160026 - MIR3 SINE MIR -6 202 127 377 258 129 12 chr4 10128817 10128980 -174159682 - L2 LINE L2 -257 3056 2875 931 71 20 45 chr4 10129490 10129813 -174158849 + (TGGA)n Simple_repeat Simple_repeat 1 315 0 297 51 0 0 chr4 10129825 10129864 -174158798 + (TGGA)n Simple_repeat Simple_repeat 1 39 0 224 297 203 7 chr4 10129908 10130046 -174158616 - MIR3 SINE MIR -41 167 3 22 56 0 0 chr4 10130111 10130147 -174158515 + AT_rich Low_complexity Low_complexity 1 36 0 1410 189 79 16 chr4 10130814 10131180 -174157482 - MLT1C LTR MaLR -76 391 3 214 316 13 13 chr4 10131364 10131443 -174157219 - MIR SINE MIR -117 145 67 332 298 0 10 chr4 10131540 10131644 -174157018 - MIR SINE MIR -61 147 45 283 241 60 0 chr4 10131740 10131823 -174156839 + MER81 DNA DNA 27 114 0 372 298 128 30 chr4 10132656 10132891 -174155771 + L2 LINE L2 2906 3163 -109 2261 206 27 2 chr4 10133109 10133547 -174155115 - L1MB5 LINE L1 -8 6166 5718 190 227 68 0 chr4 10133572 10133616 -174155046 - L2 LINE L2 -23 3290 3244 238 264 35 0 chr4 10133717 10133804 -174154858 + MER45 DNA AcHobo 26 115 -1466 309 357 8 16 chr4 10134701 10134830 -174153832 + MIR SINE MIR 17 144 -118 316 248 204 0 chr4 10134984 10135097 -174153565 + MIR SINE MIR 8 143 -119 180 359 39 10 chr4 10136778 10136881 -174151781 - MIR3 SINE MIR -6 202 97 194 283 19 0 chr4 10136999 10137052 -174151610 + MIR SINE MIR 90 143 -65 3325 222 34 4 chr4 10137347 10138181 -174150481 - L1 LINE L1 -2876 3270 2412 307 320 0 49 chr4 10138310 10138432 -174150230 + L2 LINE L2 3156 3271 -1 26 30 0 0 chr4 10138451 10138484 -174150178 + AT_rich Low_complexity Low_complexity 1 33 0 568 304 68 27 chr4 10138823 10139043 -174149619 - MIR SINE MIR -21 241 13 429 296 39 82 chr4 10139743 10139949 -174148713 - MIR SINE MIR 0 262 66 2148 106 0 3 chr4 10139962 10140265 -174148397 - AluSq SINE Alu -11 302 1 204 178 0 44 chr4 10143042 10143087 -174145575 + CT-rich Low_complexity Low_complexity 3 45 0 623 225 21 0 chr4 10143088 10143368 -174145294 + (TCCA)n Simple_repeat Simple_repeat 1 285 0 208 231 26 0 chr4 10143387 10143465 -174145197 + (TCCA)n Simple_repeat Simple_repeat 1 80 0 305 279 81 62 chr4 10143578 10143739 -174144923 + L2 LINE L2 3109 3272 0 257 303 107 0 chr4 10143745 10143867 -174144795 - MIR3 SINE MIR -45 163 29 201 240 42 5 chr4 10144349 10144421 -174144241 - MIR SINE MIR -68 140 91 230 273 0 0 chr4 10144918 10144973 -174143689 + L2 LINE L2 3208 3262 -10 195 296 61 10 chr4 10145892 10145990 -174142672 + MIR SINE MIR 34 136 -72 186 43 0 0 chr4 10146110 10146133 -174142529 + (GA)n Simple_repeat Simple_repeat 1 23 0 614 281 107 12 chr4 10146789 10147042 -174141620 - MLT1J2 LTR MaLR 0 450 174 515 258 122 36 chr4 10147359 10147688 -174140974 + L2 LINE L2 2828 3184 -129 1231 193 44 139 chr4 10147699 10148108 -174140554 - MLT1A2 LTR MaLR -4 370 1 335 279 135 0 chr4 10148125 10148229 -174140433 + L2 LINE L2 3195 3312 -1 372 278 98 40 chr4 10149659 10149832 -174138830 - MIR SINE MIR -12 250 68 301 257 119 9 chr4 10150109 10150218 -174138444 - L1M4 LINE L1 -3353 2793 2673 1509 204 40 3 chr4 10150241 10150433 -174138229 - AluJo SINE Alu -2 310 102 1994 134 23 7 chr4 10150433 10150740 -174137922 + AluSx SINE Alu 1 312 0 1509 204 40 3 chr4 10150740 10150846 -174137816 - AluJo SINE Alu -210 102 1 465 343 14 28 chr4 10151549 10151765 -174136897 - MIR SINE MIR 0 262 50 2017 105 0 20 chr4 10151981 10152275 -174136387 - AluJb SINE Alu -2 310 23 610 208 17 11 chr4 10154108 10154286 -174134376 + (CACCAT)n Simple_repeat Simple_repeat 1 179 0 300 290 0 0 chr4 10154286 10154410 -174134252 + (CCA)n Simple_repeat Simple_repeat 1 124 0 * 732 171 6 23 chr4 10154384 10154560 -174134102 + (CACCAT)n Simple_repeat Simple_repeat 4 176 0 278 202 0 45 chr4 10154695 10154784 -174133878 + (CACCAT)n Simple_repeat Simple_repeat 2 86 0 655 116 0 101 chr4 10154795 10154994 -174133668 + (CACCAT)n Simple_repeat Simple_repeat 1 179 0 655 116 0 101 chr4 10155008 10155207 -174133455 + (CACCAT)n Simple_repeat Simple_repeat 1 179 0 340 97 32 0 chr4 10155219 10155281 -174133381 + (CACCAT)n Simple_repeat Simple_repeat 5 68 0 688 176 23 6 chr4 10155292 10155468 -174133194 + (CACCAT)n Simple_repeat Simple_repeat 1 179 0 208 107 0 0 chr4 10155468 10155496 -174133166 + (CAT)n Simple_repeat Simple_repeat 1 28 0 318 317 137 22 chr4 10156005 10156188 -174132474 - MIR SINE MIR -6 256 53 608 310 70 0 chr4 10156232 10156445 -174132217 + MIR SINE MIR 35 262 0 220 98 0 59 chr4 10157535 10157586 -174131076 + (TTCC)n Simple_repeat Simple_repeat 4 51 0 249 318 163 20 chr4 10157821 10158220 -174130442 + L2 LINE L2 2817 3272 0 599 365 73 0 chr4 10158280 10158636 -174130026 + L3 LINE CR1 767 1148 -429 581 324 14 19 chr4 10158649 10158862 -174129800 + MIR SINE MIR 8 219 -43 2018 137 67 50 chr4 10160077 10160365 -174128297 + THE1B LTR MaLR 1 298 -66 1954 142 0 13 chr4 10160365 10160675 -174127987 + AluSx SINE Alu 6 311 -1 2018 137 67 50 chr4 10160675 10160744 -174127918 + THE1B LTR MaLR 298 364 0 251 175 140 0 chr4 10160804 10160861 -174127801 - MIR SINE MIR -117 145 81 427 176 0 0 chr4 10161285 10161359 -174127303 + MIR SINE MIR 79 152 -110 2908 235 46 51 chr4 10163613 10163652 -174125010 - L1ME1 LINE L1 -3 6163 6125 2031 101 0 29 chr4 10163652 10163968 -174124694 - AluSq SINE Alu -6 307 1 2908 235 46 51 chr4 10163968 10164827 -174123835 - L1ME1 LINE L1 -41 6125 5263 189 0 0 0 chr4 10164827 10164848 -174123814 + (TA)n Simple_repeat Simple_repeat 1 21 0 2218 103 3 13 chr4 10164848 10165160 -174123502 - AluSx SINE Alu -3 309 1 2908 235 46 51 chr4 10165160 10165477 -174123185 - L1ME1 LINE L1 -902 5264 4940 734 32 0 11 chr4 10165477 10165571 -174123091 + (TTTC)n Simple_repeat Simple_repeat 3 95 0 2908 235 46 51 chr4 10165571 10165617 -174123045 - L1ME1 LINE L1 -1226 4940 4895 348 183 175 8 chr4 10167271 10167391 -174121271 + MIR SINE MIR 92 231 -31 340 272 60 54 chr4 10167587 10167671 -174120991 - L1ME4a LINE L1 -1 6120 6038 2204 114 0 0 chr4 10167671 10167978 -174120684 + AluSx SINE Alu 1 307 -5 340 272 60 54 chr4 10167978 10168077 -174120585 - L1ME4a LINE L1 -83 6038 5936 314 319 143 38 chr4 10168467 10168677 -174119985 - L1ME4a LINE L1 -203 5918 5687 2316 116 40 27 chr4 10169694 10170064 -174118598 - THE1C LTR MaLR 0 375 1 235 289 144 0 chr4 10170965 10171055 -174117607 - MIR SINE MIR -80 182 80 286 207 117 27 chr4 10172096 10172207 -174116455 - MER113 DNA MER1_type? -302 219 99 2178 86 7 3 chr4 10172208 10172499 -174116163 + AluSg SINE Alu 6 297 -13 908 207 43 22 chr4 10174255 10174487 -174114175 - ORSL DNA AcHobo -20 255 19 189 392 63 7 chr4 10175624 10175767 -174112895 + MIR SINE MIR 87 237 -25 563 240 7 0 chr4 10177503 10178103 -174110559 + (CA)n Simple_repeat Simple_repeat 1 604 0 518 240 6 0 chr4 10178117 10178288 -174110374 + (CA)n Simple_repeat Simple_repeat 1 172 0 417 261 0 0 chr4 10178302 10178444 -174110218 + (CA)n Simple_repeat Simple_repeat 1 142 0 581 235 6 0 chr4 10178460 10178639 -174110023 + (CA)n Simple_repeat Simple_repeat 1 180 0 629 232 0 6 chr4 10178655 10178979 -174109683 + (CA)n Simple_repeat Simple_repeat 1 321 0 228 262 0 0 chr4 10179503 10179564 -174109098 - L1MB3 LINE L1 -1 6182 6122 235 294 73 0 chr4 10180403 10180512 -174108150 - L2 LINE L2 0 3272 3156 198 195 0 0 chr4 10181937 10181978 -174106684 - MIR SINE MIR -113 149 109 261 326 47 0 chr4 10182582 10182668 -174105994 + MIR3 SINE MIR 97 186 -22 489 244 7 37 chr4 10182849 10182984 -174105678 - MER45A DNA AcHobo -2 176 46 254 289 64 87 chr4 10183654 10183827 -174104835 + MIR SINE MIR 46 214 -48 591 308 7 0 chr4 10184360 10184506 -174104156 + MIR SINE MIR 8 154 -108 417 328 88 46 chr4 10185147 10185452 -174103210 - L2 LINE L2 -25 3247 2930 187 233 167 0 chr4 10185741 10185801 -174102861 + MIR3 SINE MIR 125 194 -14 207 0 0 0 chr4 10186557 10186580 -174102082 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 287 295 48 9 chr4 10189234 10189339 -174099323 + MIR SINE MIR 117 225 -37 321 291 87 44 chr4 10189457 10189663 -174098999 - L1MB7 LINE L1 -163 6021 5807 308 254 42 99 chr4 10189942 10190084 -174098578 - L1MB7 LINE L1 -669 5452 5319 486 260 95 30 chr4 10190821 10190990 -174097672 - MER5A DNA MER1_type -6 183 4 391 306 30 63 chr4 10191027 10191329 -174097333 + L2 LINE L2 2776 3068 -245 252 0 0 0 chr4 10191395 10191423 -174097239 + (CCA)n Simple_repeat Simple_repeat 3 30 0 1086 159 0 3 chr4 10191539 10192332 -174096330 + (TGGA)n Simple_repeat Simple_repeat 1 790 0 402 316 71 9 chr4 10193658 10193870 -174094792 - L1ME LINE L1 -647 5517 5293 13217 190 47 21 chr4 10194692 10194910 -174093752 - L1PB4 LINE L1 -4 6344 6133 333 0 0 0 chr4 10194910 10194947 -174093715 + (TA)n Simple_repeat Simple_repeat 1 37 0 13217 190 47 21 chr4 10194947 10200178 -174088484 - L1PB4 LINE L1 -215 6133 772 4108 166 14 4 chr4 10200188 10200891 -174087771 - L1PB4 LINE L1 -4618 710 1 226 208 104 94 chr4 10201431 10201537 -174087125 + MIR SINE MIR 105 211 -51 2340 92 0 0 chr4 10201931 10202235 -174086427 - AluSc SINE Alu -5 304 1 369 320 4 17 chr4 10202328 10202525 -174086137 + CT-rich Low_complexity Low_complexity 1 194 0 246 171 26 13 chr4 10202532 10202608 -174086054 + (TCCA)n Simple_repeat Simple_repeat 1 77 0 1907 127 20 7 chr4 10204423 10204715 -174083947 - AluSx SINE Alu -10 302 7 276 344 33 49 chr4 10204735 10204918 -174083744 - L1ME LINE L1 -302 5819 5640 198 300 0 85 chr4 10205347 10205477 -174083185 - L2 LINE L2 -210 3062 2944 1960 202 35 86 chr4 10205498 10206146 -174082516 - LTR6A LTR ERV1 0 564 1 1674 229 52 52 chr4 10206216 10206714 -174081948 - MLT1D LTR MaLR -7 498 1 342 344 119 20 chr4 10206959 10207315 -174081347 - L2 LINE L2 -227 3045 2653 462 299 0 12 chr4 10207592 10208034 -174080628 + (CA)n Simple_repeat Simple_repeat 1 436 0 274 274 60 60 chr4 10208586 10208703 -174079959 + MIR3 SINE MIR 58 174 -34 378 339 17 0 chr4 10209223 10209338 -174079324 - L2 LINE L2 -20 3252 3136 1351 251 70 57 chr4 10209761 10210286 -174078376 - MLT1H LTR MaLR 0 549 18 643 255 57 48 chr4 10210929 10211325 -174077337 - MLT1J2 LTR MaLR -7 443 8 352 251 155 15 chr4 10211330 10211511 -174077151 + MIR SINE MIR 6 210 -52 482 266 122 18 chr4 10212436 10212658 -174076004 + MIR SINE MIR 14 258 -4 192 257 27 81 chr4 10213071 10213145 -174075517 + MIR3 SINE MIR 88 157 -51 235 293 192 5 chr4 10213489 10213687 -174074975 + MER115 DNA AcHobo 215 449 -244 279 286 169 0 chr4 10213829 10214007 -174074655 + L2 LINE L2 2562 2769 -545 270 318 28 9 chr4 10214414 10214521 -174074141 + L2 LINE L2 3154 3262 -51 848 205 19 6 chr4 10214553 10214714 -174073948 - FRAM SINE Alu -16 160 1 734 210 0 80 chr4 10214906 10215082 -174073580 + MER63 DNA MER1_type 1 788 -48 238 267 27 43 chr4 10215328 10215439 -174073223 + MIR SINE MIR 63 171 -37 204 318 15 0 chr4 10215642 10215708 -174072954 - MIR SINE MIR -77 131 65 231 188 21 0 chr4 10217057 10217105 -174071557 - MIR3 SINE MIR -48 160 112 615 202 0 0 chr4 10217603 10217702 -174070960 + FLAM_C SINE Alu 12 110 -33 319 335 52 21 chr4 10217760 10217954 -174070708 - MIR SINE MIR -3 259 60 1115 189 173 58 chr4 10218707 10219089 -174069573 - MSTB LTR MaLR 0 426 1 213 258 227 19 chr4 10219803 10220059 -174068603 - L2 LINE L2 -374 2940 2632 187 259 19 0 chr4 10220193 10220247 -174068415 - MIR SINE MIR -119 143 89 462 276 39 19 chr4 10220975 10221131 -174067531 + MIR SINE MIR 70 228 -34 243 0 0 0 chr4 10221538 10221565 -174067097 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 349 218 31 0 chr4 10223588 10223684 -174064978 - MIR SINE MIR -62 146 88 328 331 159 7 chr4 10224322 10224467 -174064195 + MIR SINE MIR 4 170 -92 610 281 24 117 chr4 10227784 10228204 -174060458 - L1ME3A LINE L1 -283 5887 5507 1855 236 156 67 chr4 10228222 10228929 -174059733 - MER21B LTR ERV1 -81 782 13 1200 267 111 102 chr4 10229117 10230673 -174057989 - L1MC4a LINE L1 -124 7918 6342 685 300 105 25 chr4 10230751 10231114 -174057548 - L1ME3A LINE L1 -139 6031 5640 394 117 0 164 chr4 10232971 10233185 -174055477 + (CCCCCA)n Simple_repeat Simple_repeat 2 180 0 225 104 0 130 chr4 10233235 10233312 -174055350 + (CCCCCA)n Simple_repeat Simple_repeat 3 69 0 204 308 25 17 chr4 10233811 10233931 -174054731 + CT-rich Low_complexity Low_complexity 3 123 0 214 235 12 74 chr4 10235133 10235214 -174053448 - MIR SINE MIR -15 247 172 257 227 0 45 chr4 10235449 10235515 -174053147 + MIR SINE MIR 83 145 -63 182 335 152 11 chr4 10236017 10236208 -174052454 - L2 LINE L2 -28 3244 3027 1765 201 105 20 chr4 10237301 10237630 -174051032 - L1MB5 LINE L1 0 6174 5797 1653 138 76 11 chr4 10237630 10237905 -174050757 - AluJb SINE Alu -19 293 1 1765 201 105 20 chr4 10237905 10238014 -174050648 - L1MB5 LINE L1 -377 5797 5699 532 208 88 0 chr4 10238015 10238140 -174050522 + MIR SINE MIR 102 237 -25 735 241 70 9 chr4 10238368 10238549 -174050113 - L1MB5 LINE L1 -1010 5136 4937 600 14 0 0 chr4 10238549 10238618 -174050044 + (TTTC)n Simple_repeat Simple_repeat 3 71 0 735 241 70 9 chr4 10238618 10238664 -174049998 - L1MB5 LINE L1 -1209 4937 4895 348 183 175 8 chr4 10240312 10240432 -174048230 + MIR SINE MIR 92 231 -31 339 275 73 28 chr4 10240627 10240708 -174047954 - L1ME4a LINE L1 -1 6120 6044 2398 108 0 0 chr4 10240708 10241015 -174047647 + AluSx SINE Alu 1 307 -5 339 275 73 28 chr4 10241015 10241111 -174047551 - L1ME4a LINE L1 -77 6044 5935 2183 111 43 25 chr4 10242730 10243098 -174045564 - THE1C LTR MaLR 0 375 1 226 318 122 0 chr4 10243990 10244097 -174044565 - MIR SINE MIR -80 182 63 318 209 118 18 chr4 10245107 10245217 -174043445 - MER113 DNA MER1_type? -302 219 99 2388 82 7 0 chr4 10245218 10245511 -174043151 + AluSg SINE Alu 6 300 -10 946 203 45 21 chr4 10247257 10247499 -174041163 - ORSL DNA AcHobo -20 255 8 210 364 79 0 chr4 10248622 10248762 -174039900 + MIR SINE MIR 87 237 -25 602 232 3 3 chr4 10250484 10250800 -174037862 + (CA)n Simple_repeat Simple_repeat 1 316 0 503 239 6 0 chr4 10250814 10250981 -174037681 + (CA)n Simple_repeat Simple_repeat 1 168 0 545 247 0 4 chr4 10250995 10251272 -174037390 + (CA)n Simple_repeat Simple_repeat 1 275 0 378 271 0 0 chr4 10251286 10251426 -174037236 + (CA)n Simple_repeat Simple_repeat 1 140 0 560 240 6 0 chr4 10251442 10251621 -174037041 + (CA)n Simple_repeat Simple_repeat 1 180 0 629 234 0 6 chr4 10251635 10251957 -174036705 + (CA)n Simple_repeat Simple_repeat 1 319 0 218 311 66 0 chr4 10253380 10253502 -174035160 - L2 LINE L2 0 3272 3143 194 195 0 0 chr4 10254905 10254946 -174033716 - MIR SINE MIR -113 149 109 257 326 47 0 chr4 10255549 10255635 -174033027 + MIR3 SINE MIR 97 186 -22 561 250 8 15 chr4 10255816 10255948 -174032714 - MER45A DNA AcHobo -2 176 46 234 279 68 87 chr4 10256616 10256777 -174031885 + MIR SINE MIR 46 203 -59 572 315 7 0 chr4 10257314 10257460 -174031202 + MIR SINE MIR 8 154 -108 371 328 88 46 chr4 10258101 10258406 -174030256 - L2 LINE L2 -25 3247 2930 186 304 54 0 chr4 10258691 10258747 -174029915 + L3 LINE CR1 1498 1556 -21 207 0 0 0 chr4 10259510 10259533 -174029129 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 305 265 69 0 chr4 10262164 10262266 -174026396 + MIR SINE MIR 117 225 -37 308 283 93 44 chr4 10262384 10262589 -174026073 - L1MB7 LINE L1 -163 6021 5807 322 290 138 88 chr4 10262708 10263005 -174025657 - L1MB7 LINE L1 -491 5630 5319 510 272 92 17 chr4 10263722 10263895 -174024767 - MER5A DNA MER1_type 0 189 4 381 311 31 55 chr4 10263932 10264224 -174024438 + L2 LINE L2 2776 3060 -253 252 0 0 0 chr4 10264298 10264326 -174024336 + (CCA)n Simple_repeat Simple_repeat 3 30 0 1086 160 0 0 chr4 10264440 10265231 -174023431 + (TGGA)n Simple_repeat Simple_repeat 1 791 0 367 321 71 9 chr4 10266548 10266760 -174021902 - L1ME LINE L1 -645 5517 5293 13530 193 48 16 chr4 10267582 10267800 -174020862 - L1PB4 LINE L1 -4 6344 6134 207 0 0 0 chr4 10267800 10267823 -174020839 + (TA)n Simple_repeat Simple_repeat 2 24 0 13530 193 48 16 chr4 10267823 10273024 -174015638 - L1PB4 LINE L1 -214 6134 772 4159 167 14 0 chr4 10273034 10273734 -174014928 - L1PB4 LINE L1 -4618 710 1 219 208 104 94 chr4 10274274 10274380 -174014282 + MIR SINE MIR 105 211 -51 2486 92 0 0 chr4 10274772 10275077 -174013585 - AluSc SINE Alu -4 305 1 369 320 4 17 chr4 10275170 10275367 -174013295 + CT-rich Low_complexity Low_complexity 1 194 0 246 171 26 13 chr4 10275374 10275450 -174013212 + (TCCA)n Simple_repeat Simple_repeat 1 77 0 2143 128 20 0 chr4 10277215 10277512 -174011150 - AluSx SINE Alu -9 303 1 276 343 39 44 chr4 10277524 10277705 -174010957 - L1ME LINE L1 -302 5819 5640 1954 202 35 86 chr4 10278277 10278925 -174009737 - LTR6A LTR ERV1 0 564 1 1712 231 53 45 chr4 10278995 10279489 -174009173 - MLT1D LTR MaLR -7 498 1 334 337 129 9 chr4 10279733 10280000 -174008662 - L2 LINE L2 -227 3045 2748 351 289 0 12 chr4 10280293 10280794 -174007868 + (CA)n Simple_repeat Simple_repeat 1 494 0 294 240 53 93 chr4 10281302 10281452 -174007210 + MIR3 SINE MIR 31 174 -34 371 339 17 0 chr4 10281970 10282085 -174006577 - L2 LINE L2 -20 3252 3136 1585 235 80 39 chr4 10282496 10283007 -174005655 - MLT1H LTR MaLR 0 549 18 637 252 43 5 chr4 10283647 10284033 -174004629 - MLT1J2 LTR MaLR -7 443 15 379 249 163 11 chr4 10284045 10284227 -174004435 + MIR SINE MIR 6 214 -48 545 272 121 13 chr4 10285146 10285370 -174003292 + MIR SINE MIR 14 261 -1 203 257 27 81 chr4 10285778 10285852 -174002810 + MIR3 SINE MIR 88 157 -51 322 286 169 0 chr4 10286533 10286711 -174001951 + L2 LINE L2 2562 2769 -545 288 318 28 9 chr4 10287111 10287218 -174001444 + L2 LINE L2 3154 3262 -51 810 219 12 0 chr4 10287250 10287410 -174001252 - FRAM SINE Alu -17 159 1 679 210 0 80 chr4 10287601 10287777 -174000885 + MER63 DNA MER1_type 1 788 -48 301 262 28 21 chr4 10288021 10288130 -174000532 + MIR SINE MIR 63 171 -37 213 318 15 0 chr4 10288333 10288399 -174000263 - MIR SINE MIR -77 131 65 234 188 21 0 chr4 10289743 10289791 -173998871 - MIR3 SINE MIR -48 160 112 630 192 0 0 chr4 10290281 10290380 -173998282 + FLAM_C SINE Alu 12 110 -33 357 366 36 5 chr4 10290438 10290632 -173998030 - MIR SINE MIR -3 259 60 1193 195 174 50 chr4 10291385 10291764 -173996898 - MSTB LTR MaLR 0 426 1 260 274 189 37 chr4 10292167 10292729 -173995933 - L2 LINE L2 -1 3271 2632 191 259 19 0 chr4 10292862 10292916 -173995746 - MIR SINE MIR -119 143 89 506 269 39 19 chr4 10293635 10293791 -173994871 + MIR SINE MIR 70 228 -34 243 0 0 0 chr4 10294192 10294219 -173994443 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 204 309 24 24 chr4 10294801 10294885 -173993777 - L2 LINE L2 -13 3259 3176 357 233 29 0 chr4 10296223 10296326 -173992336 - MIR SINE MIR -62 146 88 341 338 159 7 chr4 10296962 10297107 -173991555 + MIR SINE MIR 4 170 -92 603 279 29 113 chr4 10300415 10300831 -173987831 - L1ME3A LINE L1 -283 5887 5507 1713 236 158 61 chr4 10300849 10301551 -173987111 - MER21B LTR ERV1 -81 782 13 1132 264 138 114 chr4 10301739 10302989 -173985673 - L1MC4 LINE L1 -124 7918 6623 180 0 0 0 chr4 10302989 10303009 -173985653 + (GGAA)n Simple_repeat Simple_repeat 4 23 0 1132 264 138 114 chr4 10303009 10303287 -173985375 - L1MC4 LINE L1 -1419 6623 6353 615 306 96 16 chr4 10303367 10303730 -173984932 - L1ME3A LINE L1 -139 6031 5640 205 176 0 155 chr4 10305444 10305637 -173983025 + C-rich Low_complexity Low_complexity 3 165 0 210 138 0 125 chr4 10305857 10305937 -173982725 + (CCCCCA)n Simple_repeat Simple_repeat 3 72 0 384 98 0 152 chr4 10305976 10306140 -173982522 + (CCCCCA)n Simple_repeat Simple_repeat 3 141 0 1269 249 64 23 chr4 10306367 10306804 -173981858 - MLT1C LTR MaLR -6 461 7 1023 264 162 26 chr4 10307732 10308516 -173980146 - L2 LINE L2 -8 3305 2421 260 258 16 32 chr4 10309567 10309691 -173978971 + CT-rich Low_complexity Low_complexity 3 124 0 204 40 0 0 chr4 10309761 10309786 -173978876 + (GGGGA)n Simple_repeat Simple_repeat 2 26 0 320 130 19 0 chr4 10309976 10310030 -173978632 - MLT1C LTR MaLR -409 58 4 390 173 13 0 chr4 10310698 10310773 -173977889 - MLT1C LTR MaLR -69 398 323 213 265 0 0 chr4 10311013 10311062 -173977600 - MIR SINE MIR -111 151 103 345 189 18 18 chr4 10311986 10312097 -173976565 + CT-rich Low_complexity Low_complexity 3 113 0 873 175 11 23 chr4 10312110 10312565 -173976097 + CT-rich Low_complexity Low_complexity 1 449 0 345 310 40 38 chr4 10312573 10312736 -173975926 + MIR SINE MIR 5 180 -62 861 175 2 0 chr4 10313871 10314330 -173974332 + (TGAG)n Simple_repeat Simple_repeat 1 460 0 267 234 0 0 chr4 10314344 10314421 -173974241 + (TGAG)n Simple_repeat Simple_repeat 3 79 0 195 42 0 0 chr4 10314449 10314473 -173974189 + (CAG)n Simple_repeat Simple_repeat 1 24 0 183 299 98 43 chr4 10314842 10315006 -173973656 - L2 LINE L2 -520 2794 2622 2142 123 0 3 chr4 10315314 10315615 -173973047 - AluSx SINE Alu -12 300 1 349 318 73 7 chr4 10315780 10315931 -173972731 + MIR SINE MIR 32 192 -70 264 291 0 44 chr4 10316053 10316235 -173972427 + (TTGGGG)n Simple_repeat Simple_repeat 2 175 0 303 293 0 37 chr4 10316337 10316667 -173971995 + (TTGGGG)n Simple_repeat Simple_repeat 1 317 0 222 263 0 65 chr4 10316877 10317063 -173971599 + (TTGGGG)n Simple_repeat Simple_repeat 2 175 0 219 296 12 19 chr4 10317013 10317175 -173971487 + (GGGTG)n Simple_repeat Simple_repeat 2 162 0 * 208 274 0 65 chr4 10317107 10317293 -173971369 + (TTGGGG)n Simple_repeat Simple_repeat 2 175 0 * 260 278 11 33 chr4 10317245 10317425 -173971237 + (GGGTG)n Simple_repeat Simple_repeat 2 177 0 * 313 255 0 54 chr4 10317319 10317503 -173971159 + (TTGGGG)n Simple_repeat Simple_repeat 2 175 0 235 311 0 33 chr4 10317417 10317597 -173971065 + (TTAGGG)n Simple_repeat Simple_repeat 2 175 0 * 279 296 3 35 chr4 10317809 10318156 -173970506 + (TTGGGG)n Simple_repeat Simple_repeat 1 335 0 318 308 0 27 chr4 10318350 10318691 -173969971 + (TTGGGG)n Simple_repeat Simple_repeat 1 331 0 284 290 0 32 chr4 10318719 10318874 -173969788 + (TTGGGG)n Simple_repeat Simple_repeat 2 151 0 212 374 0 0 chr4 10318813 10318987 -173969675 + (TTAGGG)n Simple_repeat Simple_repeat 2 175 0 * 2116 171 45 3 chr4 10319080 10319454 -173969208 - MLT1B LTR MaLR 0 390 1 252 0 0 0 chr4 10319477 10319505 -173969157 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 190 333 111 47 chr4 10319981 10320152 -173968510 + MIR SINE MIR 8 189 -73 210 278 93 62 chr4 10320198 10320295 -173968367 + L2 LINE L2 3212 3311 -2 418 332 124 13 chr4 10321732 10322039 -173966623 - L2 LINE L2 0 3272 2932 259 312 35 30 chr4 10322230 10322371 -173966291 + MIR SINE MIR 14 149 -59 319 267 30 20 chr4 10322516 10322617 -173966045 + MIR SINE MIR 98 199 -63 339 331 48 0 chr4 10325349 10325473 -173963189 + MIR SINE MIR 29 158 -104 239 316 25 0 chr4 10325748 10325827 -173962835 + L2 LINE L2 3173 3253 -19 273 269 234 28 chr4 10326149 10326294 -173962368 - MIR SINE MIR -80 182 8 180 262 90 107 chr4 10326394 10326516 -173962146 + MIR SINE MIR 28 147 -115 357 329 79 73 chr4 10327141 10327730 -173960932 - L2 LINE L2 0 3272 2649 223 261 77 0 chr4 10328127 10328192 -173960470 + MIR SINE MIR 123 192 -70 408 286 64 14 chr4 10328965 10329105 -173959557 - MIR SINE MIR -83 179 33 508 233 78 49 chr4 10329241 10329572 -173959090 - MLT1J2 LTR MaLR -23 427 46 197 357 47 0 chr4 10329668 10329797 -173958865 - L2 LINE L2 -620 2694 2560 197 336 219 0 chr4 10330775 10330903 -173957759 + MIR3 SINE MIR 45 200 -8 245 389 108 32 chr4 10331070 10331412 -173957250 - L3 LINE CR1 -253 1324 957 735 269 45 14 chr4 10331970 10332193 -173956469 + MIR SINE MIR 32 261 -1 738 202 0 0 chr4 10332205 10332383 -173956279 + (TGG)n Simple_repeat Simple_repeat 2 179 0 240 67 0 0 chr4 10332383 10332413 -173956249 + (ATG)n Simple_repeat Simple_repeat 1 30 0 763 244 36 0 chr4 10332720 10332888 -173955774 - MER5B DNA MER1_type -4 174 1 225 247 14 41 chr4 10333186 10333259 -173955403 - MIR SINE MIR -65 143 73 609 213 0 3 chr4 10333261 10333515 -173955147 + (TCCA)n Simple_repeat Simple_repeat 1 253 0 208 333 48 0 chr4 10333935 10333998 -173954664 + L2 LINE L2 3233 3298 -15 328 306 60 16 chr4 10334021 10334204 -173954458 - L2 LINE L2 -190 3123 2933 190 320 117 52 chr4 10335303 10335534 -173953128 - L2 LINE L2 -121 3151 2906 203 293 0 0 chr4 10336571 10336629 -173952033 - L2 LINE L2 -335 2978 2921 274 301 32 49 chr4 10336969 10337092 -173951570 + L2 LINE L2 2634 2754 -560 279 269 23 46 chr4 10337152 10337282 -173951380 + L2 LINE L2 3133 3259 -13 261 119 0 0 chr4 10337282 10337324 -173951338 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 1286 238 121 12 chr4 10337838 10338259 -173950403 - MLT1C LTR MaLR 0 467 1 188 135 27 0 chr4 10338806 10338843 -173949819 + (CA)n Simple_repeat Simple_repeat 1 38 0 948 206 127 57 chr4 10339352 10339668 -173948994 - MLT2C1 LTR ERVL -47 350 13 185 333 61 27 chr4 10339823 10339970 -173948692 + L2 LINE L2 3045 3196 -117 207 177 122 68 chr4 10340415 10340562 -173948100 + (GCTG)n Simple_repeat Simple_repeat 3 157 0 410 352 116 0 chr4 10341401 10341719 -173946943 + L2 LINE L2 2957 3311 -2 270 326 12 0 chr4 10341740 10341826 -173946836 + L2 LINE L2 3184 3270 -2 1076 255 28 31 chr4 10342097 10342646 -173946016 - MER77 LTR ERV1 -7 598 1 283 265 39 29 chr4 10342948 10343050 -173945612 - L2 LINE L2 -20 3252 3150 206 269 90 0 chr4 10343612 10343690 -173944972 + MER91A DNA MER1_type 21 105 -91 1189 230 90 35 chr4 10346060 10346224 -173942438 + MLT1C LTR MaLR 1 155 -312 2374 66 0 10 chr4 10346224 10346528 -173942134 + AluY SINE Alu 1 301 -10 1189 230 90 35 chr4 10346528 10346788 -173941874 + MLT1C LTR MaLR 155 458 -9 1444 54 0 16 chr4 10346930 10347116 -173941546 + L1PA8 LINE L1 5990 6172 0 674 257 138 20 chr4 10349807 10350238 -173938424 - MLT1D LTR MaLR 0 390 2 272 230 11 81 chr4 10352229 10352316 -173936346 - L2 LINE L2 0 3272 3192 189 296 0 0 chr4 10354165 10354209 -173934453 + MIR SINE MIR 219 262 0 245 327 82 62 chr4 10354330 10354779 -173933883 + L2 LINE L2 2811 3268 -4 237 261 0 31 chr4 10354846 10354911 -173933751 + MIR3 SINE MIR 96 158 -50 1644 194 84 19 chr4 10355461 10355889 -173932773 - L1MA8 LINE L1 -278 6013 5558 540 268 76 98 chr4 10356149 10356597 -173932065 - MLT1J2 LTR MaLR -10 440 3 273 356 70 0 chr4 10356737 10356852 -173931810 + MIR3 SINE MIR 47 169 -39 414 114 0 0 chr4 10357241 10357311 -173931351 + (CA)n Simple_repeat Simple_repeat 2 71 0 448 365 88 55 chr4 10357341 10357583 -173931079 - L1ME4a LINE L1 -158 5963 5704 1908 171 44 22 chr4 10357583 10357945 -173930717 - MLT1A2 LTR MaLR 0 374 5 448 365 88 55 chr4 10357945 10358064 -173930598 - L1ME4a LINE L1 -417 5704 5590 320 307 63 0 chr4 10358625 10358752 -173929910 + MIR SINE MIR 48 182 -80 274 264 110 11 chr4 10358856 10358947 -173929715 - MIR3 SINE MIR -3 205 106 257 343 97 27 chr4 10359457 10359634 -173929028 - MIR SINE MIR -33 175 3 265 271 0 0 chr4 10359669 10359739 -173928923 + C-rich Low_complexity Low_complexity 1 70 0 263 295 103 12 chr4 10360248 10360441 -173928221 - MIR3 SINE MIR -44 218 2 503 326 45 22 chr4 10360869 10361093 -173927569 - MIR SINE MIR -16 246 18 209 279 0 7 chr4 10362330 10362466 -173926196 + (TG)n Simple_repeat Simple_repeat 1 135 0 186 326 141 11 chr4 10363240 10363332 -173925330 - L2 LINE L2 -5 3267 3164 257 312 21 71 chr4 10365891 10366032 -173922630 - MIR3 SINE MIR -71 137 4 383 133 76 0 chr4 10366683 10366788 -173921874 + (CAGAGA)n Simple_repeat Simple_repeat 2 114 0 387 340 98 16 chr4 10367654 10367848 -173920814 - MIR SINE MIR -21 241 32 532 229 48 101 chr4 10367851 10368039 -173920623 + MER45A DNA AcHobo 1 178 0 237 325 95 16 chr4 10368788 10368914 -173919748 + MIR SINE MIR 108 243 -19 437 359 30 0 chr4 10368962 10369160 -173919502 + MIR SINE MIR 23 226 -36 186 277 229 0 chr4 10369160 10369243 -173919419 + MIR SINE MIR 82 183 -79 252 184 0 0 chr4 10369708 10369757 -173918905 + (TCCA)n Simple_repeat Simple_repeat 4 52 0 305 313 80 28 chr4 10369824 10370000 -173918662 + MIR SINE MIR 69 253 -9 2136 107 3 7 chr4 10370416 10370725 -173917937 - AluSc SINE Alu -1 308 1 305 195 0 12 chr4 10371436 10371518 -173917144 + GA-rich Low_complexity Low_complexity 4 84 0 307 297 23 62 chr4 10371566 10371602 -173917060 + L1ME4a LINE L1 5998 6034 -87 1990 99 60 0 chr4 10371602 10371886 -173916776 - AluSx SINE Alu -9 303 3 307 297 23 62 chr4 10371886 10371977 -173916685 + L1ME4a LINE L1 6034 6120 -1 254 283 114 18 chr4 10372369 10372535 -173916127 - LTR33A LTR ERVL -73 450 269 204 297 193 36 chr4 10373971 10374163 -173914499 + L2 LINE L2 2926 3147 -166 249 83 0 0 chr4 10374586 10374622 -173914040 + (GA)n Simple_repeat Simple_repeat 2 37 0 243 61 0 0 chr4 10374653 10374692 -173913970 + (CA)n Simple_repeat Simple_repeat 1 72 0 243 61 0 0 chr4 10374692 10374725 -173913937 + (CA)n Simple_repeat Simple_repeat 2 34 0 219 36 0 107 chr4 10374744 10374800 -173913862 + (CAGAGA)n Simple_repeat Simple_repeat 3 52 0 498 122 31 0 chr4 10375599 10375697 -173912965 + GA-rich Low_complexity Low_complexity 2 102 0 416 236 49 24 chr4 10376315 10376438 -173912224 + MIR SINE MIR 20 145 -63 238 318 55 36 chr4 10377654 10377764 -173910898 - L2 LINE L2 -96 3217 3106 1286 223 72 19 chr4 10377926 10378303 -173910359 - MER77 LTR ERV1 -208 397 1 278 302 21 9 chr4 10378393 10378504 -173910158 - MIR SINE MIR -59 149 75 370 272 54 60 chr4 10379064 10379248 -173909414 + MIR3 SINE MIR 7 189 -19 183 100 0 0 chr4 10379323 10379353 -173909309 + (TTCA)n Simple_repeat Simple_repeat 2 31 0 234 324 100 62 chr4 10379359 10379569 -173909093 - L2 LINE L2 -18 3254 3037 183 304 18 0 chr4 10382684 10382740 -173905922 + MIR SINE MIR 82 138 -70 288 263 102 34 chr4 10384233 10384351 -173904311 + MIR SINE MIR 21 146 -116 286 240 58 26 chr4 10384980 10385120 -173903542 + MIR3 SINE MIR 89 229 -33 252 267 73 63 chr4 10385260 10385451 -173903211 - MIR SINE MIR -43 219 27 385 220 41 23 chr4 10385849 10386147 -173902515 + CT-rich Low_complexity Low_complexity 1 303 0 228 280 0 0 chr4 10386149 10386199 -173902463 + C-rich Low_complexity Low_complexity 1 50 0 301 201 35 41 chr4 10386201 10386370 -173902292 + CT-rich Low_complexity Low_complexity 1 168 0 250 269 74 37 chr4 10386495 10386603 -173902059 - MIR3 SINE MIR -16 192 81 237 175 0 0 chr4 10386637 10386677 -173901985 - L2 LINE L2 -8 3264 3225 528 214 172 38 chr4 10387329 10387673 -173900989 + MLT1C LTR MaLR 7 488 -17 221 257 16 49 chr4 10389105 10389288 -173899374 + CT-rich Low_complexity Low_complexity 4 180 0 342 217 24 0 chr4 10389527 10389610 -173899052 - MER33 DNA MER1_type -6 357 273 1414 269 62 13 chr4 10389611 10390079 -173898583 + L1MC1 LINE L1 5836 6326 -7 793 163 49 20 chr4 10390085 10390288 -173898374 - MER33 DNA MER1_type -71 253 45 1768 197 90 24 chr4 10390466 10390934 -173897728 + MLT1D LTR MaLR 1 499 -6 324 64 0 0 chr4 10391269 10391316 -173897346 + (TC)n Simple_repeat Simple_repeat 1 47 0 1958 100 38 10 chr4 10391651 10391964 -173896698 - AluSx SINE Alu 0 312 1 1155 233 177 3 chr4 10392025 10392403 -173896259 - MLT1C LTR MaLR -17 450 7 274 278 48 88 chr4 10392409 10392682 -173895980 + L2 LINE L2 2963 3224 -89 272 309 43 50 chr4 10394344 10394483 -173894179 + MIR SINE MIR 33 170 -92 189 242 0 91 chr4 10394509 10394575 -173894087 + MIR SINE MIR 30 89 -119 182 206 175 0 chr4 10395583 10395646 -173893016 + MIR SINE MIR 108 181 -81 195 42 0 0 chr4 10396058 10396082 -173892580 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 330 226 105 15 chr4 10396302 10396435 -173892227 - MIR SINE MIR -70 192 48 193 250 0 21 chr4 10397042 10397090 -173891572 + MIR3 SINE MIR 108 154 -54 201 74 0 0 chr4 10397414 10397441 -173891221 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 1362 214 82 34 chr4 10397705 10398148 -173890514 + MLT1D LTR MaLR 22 467 0 500 314 47 0 chr4 10398662 10398853 -173889809 + MIR SINE MIR 28 227 -35 360 284 115 50 chr4 10399362 10399576 -173889086 + MIR SINE MIR 18 234 -28 209 279 48 57 chr4 10400095 10400200 -173888462 - MIR SINE MIR -29 179 75 444 292 8 0 chr4 10400424 10400544 -173888118 + MIR3 SINE MIR 81 201 -7 263 367 41 0 chr4 10400804 10400902 -173887760 - L2 LINE L2 -12 3301 3200 1398 158 81 0 chr4 10400974 10401247 -173887415 + AluJo SINE Alu 1 295 -17 216 0 0 0 chr4 10401836 10401860 -173886802 + (CA)n Simple_repeat Simple_repeat 1 24 0 385 298 56 25 chr4 10402223 10402384 -173886278 - MIR SINE MIR -74 188 23 296 295 0 0 chr4 10402801 10402879 -173885783 + CT-rich Low_complexity Low_complexity 2 79 0 353 287 25 0 chr4 10403039 10403163 -173885499 - MLT1J2 LTR MaLR -215 194 67 247 215 92 0 chr4 10403188 10403253 -173885409 - MLT1J1 LTR MaLR -310 136 66 252 200 92 0 chr4 10403278 10403343 -173885319 - MLT1J1 LTR MaLR -310 136 66 5306 181 33 9 chr4 10403470 10404521 -173884141 - L1MC3 LINE L1 -2 7783 6708 2024 214 55 88 chr4 10404548 10405147 -173883515 - MER119 DNA MER1_type 0 583 5 2150 99 0 17 chr4 10405612 10405914 -173882748 + AluSg SINE Alu 1 297 -13 196 320 0 13 chr4 10407699 10407777 -173880885 - L2 LINE L2 -287 2985 2909 204 100 25 0 chr4 10407948 10407988 -173880674 - L2 LINE L2 -218 3054 3014 2149 284 86 25 chr4 10408600 10409711 -173878951 - Charlie7 DNA MER1_type -7 2605 1428 307 235 20 20 chr4 10409769 10409871 -173878791 - Charlie7 DNA MER1_type -2444 168 67 1145 147 0 0 chr4 10409887 10410064 -173878598 - AluSg/x SINE Alu 0 310 134 262 315 196 4 chr4 10410254 10410514 -173878148 + L2 LINE L2 2867 3176 -137 452 174 0 10 chr4 10410939 10411037 -173877625 + GA-rich Low_complexity Low_complexity 1 97 0 1489 184 28 46 chr4 10411591 10411982 -173876680 - Charlie5 DNA MER1_type 0 2617 2234 303 269 120 0 chr4 10411979 10412087 -173876575 - Charlie5 DNA MER1_type -2485 127 7 * 217 288 0 0 chr4 10412903 10412962 -173875700 - L2 LINE L2 -229 3043 2985 399 338 61 13 chr4 10413148 10413376 -173875286 - MER102b DNA MER1_type -1 340 102 181 278 56 14 chr4 10413438 10413510 -173875152 - L2 LINE L2 -569 2745 2671 1348 184 139 65 chr4 10414352 10414754 -173873908 + MSTB1 LTR MaLR 1 432 0 411 294 18 65 chr4 10415038 10415208 -173873454 + MIR3 SINE MIR 33 194 -14 25 51 0 0 chr4 10415623 10415662 -173873000 + AT_rich Low_complexity Low_complexity 1 39 0 383 289 90 0 chr4 10415767 10415931 -173872731 - MIR SINE MIR -5 203 16 209 355 66 13 chr4 10416235 10416387 -173872275 - L2 LINE L2 -206 3066 2907 1710 155 13 26 chr4 10416585 10416889 -173871773 + AluSx SINE Alu 5 304 -8 448 266 55 0 chr4 10417342 10417470 -173871192 - MIR SINE MIR -54 208 74 448 272 96 92 chr4 10417539 10417778 -173870884 + L1ME LINE L1 5290 5529 -592 366 291 118 0 chr4 10418323 10418450 -173870212 - L1ME4a LINE L1 -207 5914 5773 574 307 62 8 chr4 10418468 10418709 -173869953 - MIR SINE MIR -8 254 1 215 228 0 0 chr4 10419020 10419077 -173869585 + A-rich Low_complexity Low_complexity 1 57 0 217 191 0 21 chr4 10419359 10419406 -173869256 + L2 LINE L2 3263 3308 -5 382 266 63 28 chr4 10419975 10420118 -173868544 - MLT1K LTR MaLR -369 219 72 426 39 0 0 chr4 10421152 10421204 -173867458 + (TG)n Simple_repeat Simple_repeat 2 53 0 208 330 30 10 chr4 10421336 10421436 -173867226 + MIR SINE MIR 43 144 -64 298 320 47 16 chr4 10422343 10422471 -173866191 - L2 LINE L2 -5 3267 3136 252 292 87 56 chr4 10424490 10424651 -173864011 + HAL1b LINE L1 482 647 -701 262 297 239 7 chr4 10427070 10427225 -173861437 - L2 LINE L2 -541 2773 2583 287 343 119 21 chr4 10427235 10427521 -173861141 - L2 LINE L2 -870 2444 2131 562 211 29 0 chr4 10427701 10427876 -173860786 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 856 163 12 0 chr4 10427903 10428075 -173860587 + (TCCA)n Simple_repeat Simple_repeat 2 175 0 255 320 16 8 chr4 10428359 10428481 -173860181 + MIR SINE MIR 94 216 -46 236 273 0 0 chr4 10428950 10429005 -173859657 - MIR SINE MIR -68 140 86 983 213 63 14 chr4 10429266 10429473 -173859189 - MER20 DNA MER1_type 0 219 3 188 100 0 0 chr4 10430155 10430185 -173858477 + L2 LINE L2 2948 2977 -336 430 248 51 15 chr4 10430686 10430823 -173857839 + MIR SINE MIR 46 187 -75 860 177 6 0 chr4 10432442 10432617 -173856045 + (TCCA)n Simple_repeat Simple_repeat 4 179 0 839 201 3 0 chr4 10432655 10433013 -173855649 + (TCCA)n Simple_repeat Simple_repeat 1 359 0 221 344 135 43 chr4 10433049 10433212 -173855450 - L2 LINE L2 -3 3310 3133 485 236 24 0 chr4 10433545 10433668 -173854994 - MER58C DNA MER1_type 0 215 90 1385 206 113 21 chr4 10433677 10434100 -173854562 - MLT1C LTR MaLR 0 467 6 244 364 35 14 chr4 10434337 10434480 -173854182 - MIR SINE MIR -28 234 89 261 273 13 13 chr4 10434684 10434761 -173853901 - L3 LINE CR1 -89 1488 1412 896 221 124 0 chr4 10435370 10435628 -173853034 - MLT1C LTR MaLR -153 314 25 219 333 29 36 chr4 10436618 10436756 -173851906 - MIR3 SINE MIR -27 181 45 2280 137 33 22 chr4 10436763 10437122 -173851540 + THE1B LTR MaLR 2 364 0 257 245 134 28 chr4 10437183 10437353 -173851309 + MIR SINE MIR 16 205 -57 192 303 84 67 chr4 10437367 10437486 -173851176 + L2 LINE L2 3189 3309 -4 351 336 0 0 chr4 10437744 10437848 -173850814 - MIR3 SINE MIR -21 187 84 397 283 154 38 chr4 10438970 10439210 -173849452 - HAL1b LINE L1 -629 719 452 325 308 62 82 chr4 10439388 10439596 -173849066 - HAL1 LINE L1 -1218 1289 1086 3110 97 16 9 chr4 10439620 10440062 -173848600 - L1PA11 LINE L1 -3 6171 5727 620 301 42 5 chr4 10440252 10440468 -173848194 + L3 LINE CR1 1294 1517 -60 207 366 47 11 chr4 10442213 10442404 -173846258 - L2 LINE L2 -228 3044 2847 2272 103 0 0 chr4 10442693 10443003 -173845659 - AluSg SINE Alu 0 310 1 646 246 78 6 chr4 10443004 10443183 -173845479 - MIR SINE MIR -35 227 36 253 255 112 20 chr4 10443903 10444001 -173844661 - MIR SINE MIR -58 150 44 719 196 0 0 chr4 10444068 10444201 -173844461 + MLT1D LTR MaLR 368 500 -5 290 266 8 32 chr4 10444442 10444566 -173844096 + CT-rich Low_complexity Low_complexity 1 121 0 22 0 0 0 chr4 10445547 10445569 -173843093 + AT_rich Low_complexity Low_complexity 1 22 0 756 301 77 18 chr4 10445724 10446077 -173842585 + MLT1I LTR MaLR 13 396 -13 246 32 0 0 chr4 10446120 10446151 -173842511 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 260 276 94 47 chr4 10446242 10446369 -173842293 - MLT1G1 LTR MaLR 0 555 423 634 147 0 0 chr4 10446393 10446488 -173842174 + AluJb SINE Alu 207 301 -11 665 279 32 23 chr4 10446488 10446707 -173841955 - MLT1G1 LTR MaLR -359 236 16 287 313 62 23 chr4 10447301 10447429 -173841233 - L2 LINE L2 -1 3271 3139 263 388 18 24 chr4 10448014 10448184 -173840478 + MIR SINE MIR 12 180 -82 2540 218 89 48 chr4 10448259 10448967 -173839695 - MER21B LTR ERV1 -115 748 12 268 303 92 17 chr4 10449099 10449218 -173839444 - L2 LINE L2 0 3272 3145 272 211 92 0 chr4 10450362 10450438 -173838224 - MER92B LTR ERV1 -8 628 546 515 255 182 0 chr4 10451019 10451211 -173837451 - MER92B LTR ERV1 -52 584 358 286 194 41 71 chr4 10451226 10451263 -173837399 - MER92B LTR ERV1 -385 251 214 2273 105 0 0 chr4 10451263 10451569 -173837093 - AluSg SINE Alu -4 306 1 286 194 41 71 chr4 10451569 10451629 -173837033 - MER92B LTR ERV1 -422 214 157 2007 152 7 0 chr4 10453114 10453424 -173835238 - AluSx SINE Alu 0 312 1 646 142 35 0 chr4 10453515 10453628 -173835034 - MLT1D LTR MaLR -17 488 372 381 93 0 0 chr4 10453947 10454001 -173834661 + (CA)n Simple_repeat Simple_repeat 2 55 0 283 298 35 15 chr4 10454012 10454210 -173834452 - L1MEd LINE L1 -3701 2428 2227 1267 127 24 19 chr4 10454211 10454416 -173834246 - AluSq SINE Alu -40 273 68 1025 170 12 0 chr4 10454772 10454943 -173833719 + AluSg/x SINE Alu 132 304 -6 197 33 33 0 chr4 10454955 10454985 -173833677 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 9400 57 8 108 chr4 10454989 10456511 -173832151 - SVA Other Other -17 1369 1 493 287 105 29 chr4 10456695 10457113 -173831549 - L1MEd LINE L1 -5049 1070 621 308 144 51 42 chr4 10457278 10457396 -173831266 + (TG)n Simple_repeat Simple_repeat 2 120 0 1935 131 67 62 chr4 10457465 10457617 -173831045 + THE1C LTR MaLR 1 151 -224 2136 56 63 0 chr4 10457617 10457901 -173830761 - AluY SINE Alu -9 302 1 1935 131 67 62 chr4 10457901 10458121 -173830541 + THE1C LTR MaLR 151 375 0 991 301 100 30 chr4 10458273 10458744 -173829918 - MLT1J LTR MaLR -6 505 2 253 271 32 101 chr4 10458782 10458970 -173829692 - L1MEd LINE L1 -5934 185 11 229 323 141 0 chr4 10459969 10460068 -173828594 - MLT1J LTR MaLR -359 152 40 246 318 94 40 chr4 10460789 10460990 -173827672 - MIR SINE MIR -15 247 36 249 253 154 62 chr4 10461013 10461175 -173827487 - MIR3 SINE MIR -21 187 11 288 311 0 0 chr4 10461251 10461325 -173827337 - LTR16C LTR ERVL 0 491 418 331 248 109 0 chr4 10461390 10461491 -173827171 - LTR16C LTR ERVL -178 313 202 189 317 173 36 chr4 10461568 10461817 -173826845 + L2 LINE L2 3019 3301 -12 231 302 155 9 chr4 10462101 10462217 -173826445 - L2 LINE L2 -16 3256 3124 195 228 18 18 chr4 10462430 10462487 -173826175 + MIR SINE MIR 70 126 -136 218 267 105 87 chr4 10462769 10462941 -173825721 + L2 LINE L2 3062 3236 -36 582 239 161 63 chr4 10464946 10465201 -173823461 + MER58B DNA MER1_type 62 341 0 591 189 26 13 chr4 10467069 10467298 -173821364 + (TCCA)n Simple_repeat Simple_repeat 1 232 0 297 132 26 26 chr4 10467341 10467417 -173821245 + (TCCA)n Simple_repeat Simple_repeat 2 77 0 776 163 17 6 chr4 10467429 10467607 -173821055 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 629 134 28 34 chr4 10467647 10467826 -173820836 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 851 133 17 17 chr4 10467864 10468044 -173820618 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 581 165 28 23 chr4 10468089 10468265 -173820397 + (TCCA)n Simple_repeat Simple_repeat 4 180 0 602 203 25 0 chr4 10468317 10468480 -173820182 + (TCCA)n Simple_repeat Simple_repeat 3 169 0 282 305 48 0 chr4 10468484 10468589 -173820073 - L2 LINE L2 -5 3308 3199 209 260 40 0 chr4 10468606 10468656 -173820006 + MER91A DNA MER1_type 19 70 -126 494 160 34 117 chr4 10469167 10469373 -173819289 + MER53 DNA DNA 1 189 0 762 146 35 0 chr4 10469602 10469773 -173818889 + (TCCA)n Simple_repeat Simple_repeat 2 178 0 300 235 18 24 chr4 10470437 10470603 -173818059 + (TCCA)n Simple_repeat Simple_repeat 4 168 0 183 80 0 0 chr4 10470657 10470682 -173817980 + (CCCA)n Simple_repeat Simple_repeat 3 27 0 330 345 61 39 chr4 10470704 10471014 -173817648 - L2 LINE L2 -1 3271 2955 240 337 30 10 chr4 10471036 10471137 -173817525 + MIR SINE MIR 47 149 -113 446 329 162 22 chr4 10471269 10472140 -173816522 + L2 LINE L2 2174 3203 -110 255 31 0 0 chr4 10472140 10472172 -173816490 + (CA)n Simple_repeat Simple_repeat 2 33 0 446 329 162 22 chr4 10472172 10472271 -173816391 + L2 LINE L2 3203 3287 -26 495 89 0 33 chr4 10473298 10473388 -173815274 + (TCC)n Simple_repeat Simple_repeat 3 89 0 409 292 34 34 chr4 10473712 10473890 -173814772 - LTR16A1 LTR ERVL -218 239 62 873 161 3 0 chr4 10474605 10474898 -173813764 + (TG)n Simple_repeat Simple_repeat 1 294 0 253 146 0 0 chr4 10475707 10475748 -173812914 + L3 LINE CR1 1425 1465 -112 200 275 14 0 chr4 10476704 10476773 -173811889 + L2 LINE L2 2015 2084 -1230 202 295 63 11 chr4 10477059 10477154 -173811508 + L2 LINE L2 3160 3259 -54 350 271 120 30 chr4 10477280 10477413 -173811249 + MIR SINE MIR 108 252 -10 402 313 53 48 chr4 10478588 10478796 -173809866 + MIR SINE MIR 36 244 -18 389 259 6 0 chr4 10478980 10479138 -173809524 + GA-rich Low_complexity Low_complexity 1 159 0 1688 141 0 28 chr4 10479159 10479450 -173809212 + AluJo SINE Alu 1 283 -29 521 103 0 0 chr4 10479382 10479450 -173809212 + AluJ/FRAM SINE Alu 216 320 0 279 0 54 0 chr4 10479450 10479487 -173809175 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 328 294 32 97 chr4 10479693 10479852 -173808810 - L1ME4a LINE L1 -23 6098 5870 271 273 0 23 chr4 10479852 10479940 -173808722 + (TATG)n Simple_repeat Simple_repeat 3 88 0 328 294 32 97 chr4 10479940 10479972 -173808690 - L1ME4a LINE L1 -251 5870 5838 344 313 62 58 chr4 10479972 10480180 -173808482 + L2 LINE L2 3104 3312 -1 1925 150 3 0 chr4 10480281 10480587 -173808075 - AluJb SINE Alu -5 307 1 255 31 0 0 chr4 10481484 10481516 -173807146 + (CAGAA)n Simple_repeat Simple_repeat 5 36 0 2254 72 10 0 chr4 10481543 10481836 -173806826 + AluY SINE Alu 1 296 -15 252 253 120 0 chr4 10481896 10481971 -173806691 - L2 LINE L2 -25 3288 3205 615 231 18 1 chr4 10482014 10482199 -173806463 + L1MB4 LINE L1 5992 6180 0 500 172 35 132 chr4 10482383 10482557 -173806105 + L1MA7 LINE L1 6133 6289 -2 32 0 0 0 chr4 10482557 10482589 -173806073 + AT_rich Low_complexity Low_complexity 1 32 0 443 374 75 19 chr4 10482865 10483397 -173805265 + L2 LINE L2 2092 2653 -661 210 118 0 0 chr4 10484335 10484369 -173804293 + (T)n Simple_repeat Simple_repeat 1 34 0 299 316 73 7 chr4 10485320 10485456 -173803206 + MIR SINE MIR 81 225 -37 275 286 95 24 chr4 10486168 10486294 -173802368 - L2 LINE L2 -179 3093 2959 365 263 29 36 chr4 10486637 10486774 -173801888 + L2 LINE L2 2921 3056 -216 2084 112 10 0 chr4 10487395 10487691 -173800971 + AluSx SINE Alu 1 299 -13 2393 260 92 4 chr4 10487708 10488486 -173800176 + L1MC3 LINE L1 6869 7715 -70 263 263 222 0 chr4 10488536 10488635 -173800027 + MIR SINE MIR 14 134 -128 335 136 0 45 chr4 10488641 10488707 -173799955 + L1MD3 LINE L1 7920 7982 -13 195 209 47 0 chr4 10489482 10489525 -173799137 + MIR SINE MIR 14 58 -204 312 127 0 0 chr4 10489665 10489720 -173798942 + (TGAA)n Simple_repeat Simple_repeat 2 56 0 1096 262 77 25 chr4 10490083 10490522 -173798140 - MLT1C LTR MaLR 0 467 6 251 366 58 31 chr4 10490678 10490902 -173797760 + L2 LINE L2 3084 3313 0 318 98 0 0 chr4 10490999 10491050 -173797612 + (TGAA)n Simple_repeat Simple_repeat 4 54 0 596 271 81 9 chr4 10492449 10492670 -173795992 - MLT1D LTR MaLR -8 497 261 234 248 0 0 chr4 10492716 10492825 -173795837 + (TG)n Simple_repeat Simple_repeat 1 109 0 432 233 0 0 chr4 10492843 10493015 -173795647 + (TG)n Simple_repeat Simple_repeat 2 173 0 360 244 0 0 chr4 10493050 10493230 -173795432 + (TG)n Simple_repeat Simple_repeat 1 180 0 198 241 0 0 chr4 10493291 10493378 -173795284 + (TG)n Simple_repeat Simple_repeat 1 87 0 347 247 6 0 chr4 10493431 10493589 -173795073 + (TG)n Simple_repeat Simple_repeat 1 159 0 474 228 0 0 chr4 10493608 10493846 -173794816 + (TG)n Simple_repeat Simple_repeat 1 238 0 481 268 39 22 chr4 10493852 10494031 -173794631 - MLT1D LTR MaLR -308 197 16 303 308 154 0 chr4 10494088 10494283 -173794379 - LTR33 LTR ERVL -247 274 50 1887 132 66 44 chr4 10494474 10494839 -173793823 - THE1C LTR MaLR -2 373 1 234 231 0 31 chr4 10494899 10494964 -173793698 + L2 LINE L2 3157 3219 -53 1113 109 17 19 chr4 10495000 10495358 -173793304 + (TGGA)n Simple_repeat Simple_repeat 1 358 0 250 217 12 24 chr4 10496201 10496284 -173792378 - MLT1H LTR MaLR -357 192 111 261 279 70 0 chr4 10496831 10496917 -173791745 - L2 LINE L2 -188 3084 2993 376 250 58 17 chr4 10498662 10498782 -173789880 + MIR SINE MIR 80 204 -58 207 88 0 0 chr4 10498784 10498818 -173789844 + (TG)n Simple_repeat Simple_repeat 1 34 0 299 278 216 0 chr4 10498947 10499044 -173789618 - L2 LINE L2 -14 3299 3182 476 274 0 0 chr4 10499194 10499318 -173789344 + MER58B DNA MER1_type 218 341 0 859 148 77 0 chr4 10499631 10499800 -173788862 + MLT1B LTR MaLR 8 189 -201 773 153 0 8 chr4 10499833 10499957 -173788705 + FRAM SINE Alu 49 171 -5 805 194 70 0 chr4 10499961 10500147 -173788515 + MLT1B LTR MaLR 192 390 0 270 221 63 32 chr4 10500365 10500460 -173788202 - L2 LINE L2 -258 3014 2917 240 35 0 0 chr4 10501491 10501520 -173787142 + (GGA)n Simple_repeat Simple_repeat 2 30 0 361 218 129 0 chr4 10501786 10501887 -173786775 - L2 LINE L2 -16 3297 3184 224 267 134 62 chr4 10502406 10502695 -173785967 - L2 LINE L2 -188 3084 2771 248 365 21 0 chr4 10503481 10503577 -173785085 + MIR SINE MIR 85 182 -80 187 303 97 28 chr4 10503663 10503808 -173784854 - MIR SINE MIR -21 241 87 242 225 144 9 chr4 10503907 10504018 -173784644 - MIR SINE MIR -64 144 19 492 32 0 0 chr4 10504018 10504080 -173784582 + (CAGCC)n Simple_repeat Simple_repeat 4 65 0 1776 191 70 5 chr4 10504821 10505220 -173783442 - LTR32 LTR ERVL 0 471 47 347 237 0 3 chr4 10506138 10506296 -173782366 - MER45C DNA AcHobo 0 953 756 647 255 165 48 chr4 10506302 10506553 -173782109 - MER45C DNA AcHobo -533 420 109 2228 89 3 0 chr4 10506553 10506845 -173781817 - AluSp SINE Alu -20 293 1 647 255 165 48 chr4 10506845 10506969 -173781693 - MER45C DNA AcHobo -844 109 1 225 0 0 0 chr4 10508505 10508530 -173780132 + (CA)n Simple_repeat Simple_repeat 2 26 0 349 275 28 0 chr4 10508672 10508781 -173779881 - MER45C DNA AcHobo -759 194 83 574 214 6 16 chr4 10510604 10510786 -173777876 + (TGAG)n Simple_repeat Simple_repeat 1 180 0 298 183 33 0 chr4 10510788 10510848 -173777814 + (TGAA)n Simple_repeat Simple_repeat 3 64 0 1038 151 1 6 chr4 10510848 10511650 -173777012 + (TGAG)n Simple_repeat Simple_repeat 1 797 0 204 40 0 0 chr4 10512579 10512604 -173776058 + (A)n Simple_repeat Simple_repeat 1 25 0 368 286 119 24 chr4 10513213 10513423 -173775239 + MIR SINE MIR 31 260 -2 272 345 37 15 chr4 10513881 10514050 -173774612 + MIR SINE MIR 3 172 -68 391 288 22 66 chr4 10514241 10514442 -173774220 + MIR3 SINE MIR 15 206 -56 182 61 0 30 chr4 10515518 10515551 -173773111 + (CCCCCA)n Simple_repeat Simple_repeat 4 35 0 395 277 31 15 chr4 10516003 10516133 -173772529 - MER63A DNA MER1_type -26 184 53 981 144 0 0 chr4 10516228 10516272 -173772390 + (TGAG)n Simple_repeat Simple_repeat 1 218 0 981 144 0 0 chr4 10516272 10516446 -173772216 + (TGAG)n Simple_repeat Simple_repeat 4 177 0 1071 102 17 0 chr4 10516476 10516653 -173772009 + (TGAG)n Simple_repeat Simple_repeat 1 180 0 321 89 0 0 chr4 10517011 10517056 -173771606 + (GGA)n Simple_repeat Simple_repeat 3 47 0 464 371 125 0 chr4 10518197 10518477 -173770185 - L3 LINE CR1 -33 1544 1230 360 274 75 52 chr4 10518654 10518906 -173769756 + L2 LINE L2 2842 3099 -173 1261 246 62 42 chr4 10519149 10519646 -173769016 - MER90 LTR ERV1 0 614 108 310 313 0 0 chr4 10520943 10521023 -173767639 + L2 LINE L2 3211 3290 -23 331 330 19 0 chr4 10521138 10521241 -173767421 - MIR SINE MIR -111 151 47 264 349 28 94 chr4 10521349 10521784 -173766878 - L2 LINE L2 -1 3312 2907 305 307 93 29 chr4 10523129 10523409 -173765253 - L1ME4a LINE L1 -230 5891 5594 300 422 12 12 chr4 10523479 10523640 -173765022 - L1ME4a LINE L1 -637 5484 5324 6141 180 50 43 chr4 10523817 10525244 -173763418 + L1M4c LINE L1 1 1442 -4942 2173 117 3 0 chr4 10525244 10525544 -173763118 - AluSx SINE Alu -10 302 2 6141 180 50 43 chr4 10525544 10525702 -173762960 + L1M4c LINE L1 1442 1597 -4787 474 320 10 10 chr4 10526000 10526194 -173762468 + MLT1J LTR MaLR 23 216 -295 553 345 93 13 chr4 10526461 10526849 -173761813 + L1ME4a LINE L1 5478 5896 -225 2425 59 20 3 chr4 10527600 10527906 -173760756 + AluY SINE Alu 1 311 0 191 323 16 0 chr4 10528859 10528921 -173759741 + L2 LINE L2 3249 3311 -2 450 219 21 20 chr4 10529113 10529244 -173759418 - MIR SINE MIR -43 165 33 227 255 0 0 chr4 10529570 10529621 -173759041 + C-rich Low_complexity Low_complexity 4 54 0 667 175 267 0 chr4 10529641 10529858 -173758804 - MER58 DNA MER1_type 0 2420 2146 227 243 0 27 chr4 10529934 10530045 -173758617 + CT-rich Low_complexity Low_complexity 1 108 0 504 196 0 30 chr4 10530099 10530267 -173758395 + CT-rich Low_complexity Low_complexity 1 163 0 195 214 0 0 chr4 10530321 10530391 -173758271 + CT-rich Low_complexity Low_complexity 2 71 0 287 304 35 17 chr4 10530688 10530803 -173757859 - MIR SINE MIR -70 138 22 453 244 17 9 chr4 10531708 10531823 -173756839 + MIR SINE MIR 6 121 -141 693 298 48 4 chr4 10532073 10532301 -173756361 + MIR SINE MIR 6 243 -19 655 251 184 43 chr4 10532639 10533058 -173755604 + MLT1D LTR MaLR 3 480 -25 530 241 60 79 chr4 10534199 10534464 -173754198 + MLT1D-int LTR MaLR 1112 1371 0 1788 212 37 33 chr4 10534475 10534966 -173753696 + MLT1D LTR MaLR 12 504 -1 251 193 96 36 chr4 10535026 10535109 -173753553 + MIR SINE MIR 174 261 -1 201 224 41 0 chr4 10535124 10535173 -173753489 + MIR SINE MIR 78 128 -134 378 209 180 57 chr4 10536415 10536626 -173752036 - MLT1H LTR MaLR -14 535 299 404 288 103 32 chr4 10536632 10536913 -173751749 - MLT1H LTR MaLR -102 447 147 221 282 18 3 chr4 10537005 10537073 -173751589 - MIR SINE MIR -119 89 21 230 359 127 0 chr4 10537518 10537660 -173751002 + MIR SINE MIR 77 236 -26 243 358 8 8 chr4 10537699 10537819 -173750843 + L2 LINE L2 2933 3052 -220 270 279 0 0 chr4 10537904 10537965 -173750697 + MIR SINE MIR 110 170 -92 359 297 27 18 chr4 10537965 10538076 -173750586 - L2 LINE L2 -1 3312 3201 2233 104 7 0 chr4 10538693 10538992 -173749670 + AluSx SINE Alu 1 301 -11 341 242 87 27 chr4 10539182 10539331 -173749331 - L1ME4a LINE L1 -12 6109 5952 938 214 45 15 chr4 10541014 10541280 -173747382 - L1MB7 LINE L1 -9 6175 5902 234 261 0 0 chr4 10541574 10541620 -173747042 - MIR SINE MIR -106 156 111 348 314 42 0 chr4 10541829 10541947 -173746715 - MIR SINE MIR -90 172 50 606 158 40 0 chr4 10543104 10543336 -173745326 + (TGGA)n Simple_repeat Simple_repeat 1 241 0 715 164 29 0 chr4 10543361 10543532 -173745130 + (TGGA)n Simple_repeat Simple_repeat 3 178 0 535 156 50 0 chr4 10543557 10543717 -173744945 + (TGGA)n Simple_repeat Simple_repeat 3 170 0 776 145 36 16 chr4 10543737 10544045 -173744617 + (TGGA)n Simple_repeat Simple_repeat 1 314 0 228 317 37 0 chr4 10544532 10544614 -173744048 + L2 LINE L2 3188 3272 0 332 262 58 9 chr4 10545664 10545774 -173742888 + MIR3 SINE MIR 58 174 -53 212 341 171 43 chr4 10545843 10546142 -173742520 - L2 LINE L2 -23 3249 2913 299 226 66 47 chr4 10547608 10547714 -173740948 + MIR3 SINE MIR 101 208 0 201 278 19 0 chr4 10548006 10548060 -173740602 - L2 LINE L2 -1 3271 3217 307 371 111 22 chr4 10548069 10548430 -173740232 + L2 LINE L2 2877 3269 -3 1080 128 0 0 chr4 10548509 10548739 -173739923 + (TGGA)n Simple_repeat Simple_repeat 1 230 0 981 142 0 0 chr4 10548741 10548910 -173739752 + (TGGG)n Simple_repeat Simple_repeat 2 170 0 1386 68 0 0 chr4 10548911 10549318 -173739344 + (TGGA)n Simple_repeat Simple_repeat 1 585 0 264 260 55 0 chr4 10549784 10549857 -173738805 + MIR3 SINE MIR 115 191 -17 192 300 0 33 chr4 10553102 10553162 -173735500 - L3 LINE CR1 -110 1467 1410 195 238 79 16 chr4 10553877 10553940 -173734722 - L3 LINE CR1 -543 1034 968 339 200 88 0 chr4 10554200 10554280 -173734382 + MIR SINE MIR 66 152 -110 413 160 8 50 chr4 10554484 10554603 -173734059 + GA-rich Low_complexity Low_complexity 2 115 0 202 309 82 0 chr4 10554797 10554907 -173733755 - L2 LINE L2 -461 2853 2735 316 232 24 0 chr4 10555721 10555803 -173732859 + MIR SINE MIR 61 144 -118 434 275 186 36 chr4 10555968 10556215 -173732447 - L2 LINE L2 0 3272 2989 197 181 28 56 chr4 10556880 10556952 -173731710 - L2 LINE L2 -176 3096 3027 835 255 115 23 chr4 10558321 10558732 -173729930 + MLT1C LTR MaLR 40 488 -17 362 168 0 70 chr4 10559331 10559516 -173729146 + (GGCTG)n Simple_repeat Simple_repeat 2 173 0 433 150 0 70 chr4 10559588 10559775 -173728887 + (GGCTG)n Simple_repeat Simple_repeat 2 175 0 369 174 0 65 chr4 10559874 10560154 -173728508 + (GGCTG)n Simple_repeat Simple_repeat 1 261 0 217 339 0 0 chr4 10560289 10560351 -173728311 - MIR SINE MIR -55 153 92 354 344 33 0 chr4 10560470 10560592 -173728070 - L2 LINE L2 -6 3307 3182 272 278 52 61 chr4 10560957 10561072 -173727590 + L2 LINE L2 3200 3313 0 240 217 83 75 chr4 10563524 10563644 -173725018 + MIR SINE MIR 25 145 -117 453 149 0 0 chr4 10565017 10565091 -173723571 + MIR SINE MIR 71 144 -118 523 273 40 48 chr4 10566399 10566648 -173722014 - MER46C DNA MER2_type -2 336 90 950 177 89 7 chr4 10566722 10567090 -173721572 - MER31A LTR ERV1 -7 478 27 243 241 17 0 chr4 10567383 10567441 -173721221 + MIR SINE MIR 87 145 -63 688 206 265 5 chr4 10567687 10567906 -173720756 - MLT1F1 LTR MaLR -285 282 7 365 306 106 6 chr4 10569085 10569245 -173719417 + L2 LINE L2 2994 3169 -103 845 197 17 7 chr4 10569614 10570037 -173718625 + (TCCA)n Simple_repeat Simple_repeat 1 427 0 281 293 213 32 chr4 10570446 10570794 -173717868 + L2 LINE L2 2859 3269 -3 229 327 52 59 chr4 10570810 10570963 -173717699 - MIR3 SINE MIR -45 163 12 239 156 39 0 chr4 10571095 10571152 -173717510 + MIR SINE MIR 99 157 -62 343 244 62 31 chr4 10572044 10572237 -173716425 - L1ME4a LINE L1 -1 6120 5922 393 285 54 8 chr4 10572629 10572799 -173715863 - MIR3 SINE MIR -46 162 37 228 122 0 0 chr4 10573333 10573374 -173715288 + (CA)n Simple_repeat Simple_repeat 2 42 0 3165 234 71 40 chr4 10573527 10574485 -173714177 + L1MD1 LINE L1 4813 5831 -411 2020 132 0 3 chr4 10574485 10574781 -173713881 + AluSx SINE Alu 1 295 -17 3165 234 71 40 chr4 10574781 10575201 -173713461 + L1MD1 LINE L1 5831 6237 -5 238 284 82 8 chr4 10575233 10575367 -173713295 + L1ME4a LINE L1 5978 6121 0 188 182 0 0 chr4 10575669 10575702 -173712960 + MIR SINE MIR 117 149 -113 884 188 152 25 chr4 10575783 10576059 -173712603 - MLT1C LTR MaLR -140 327 17 213 213 0 0 chr4 10576239 10576286 -173712376 + GA-rich Low_complexity Low_complexity 3 49 0 252 86 0 0 chr4 10576902 10576937 -173711725 + (TGAG)n Simple_repeat Simple_repeat 1 35 0 954 179 3 4 chr4 10577409 10578211 -173710451 + (TGG)n Simple_repeat Simple_repeat 1 801 0 704 144 0 8 chr4 10578226 10578358 -173710304 + (TGG)n Simple_repeat Simple_repeat 1 131 0 218 350 21 43 chr4 10578912 10579052 -173709610 - L2 LINE L2 -453 2861 2725 248 318 37 17 chr4 10579227 10579358 -173709304 + MIR3 SINE MIR 15 147 -74 1502 127 5 9 chr4 10579656 10579899 -173708763 + AluSg SINE Alu 62 303 0 333 197 82 0 chr4 10580350 10580440 -173708222 + MIR SINE MIR 64 160 -64 231 180 20 40 chr4 10581034 10581084 -173707578 - MIR SINE MIR -56 152 104 182 359 98 0 chr4 10581128 10581220 -173707442 - L2 LINE L2 -34 3238 3138 261 278 41 10 chr4 10583269 10583366 -173705296 - MLT1J1 LTR MaLR -303 143 44 2817 191 69 1 chr4 10583527 10584183 -173704479 + L1MB7 LINE L1 5444 6143 -41 4449 188 21 40 chr4 10584389 10585606 -173703056 + L1M2 LINE L1 4315 5501 -744 210 345 109 24 chr4 10585946 10586111 -173702551 + L2 LINE L2 3030 3208 -64 248 298 20 57 chr4 10586146 10586268 -173702394 - MIR SINE MIR -70 138 35 414 230 20 1 chr4 10587983 10588095 -173700567 - MIR SINE MIR -63 145 33 277 360 9 9 chr4 10588827 10588938 -173699724 - L2 LINE L2 -196 3076 2966 205 383 145 9 chr4 10588950 10589164 -173699498 + L2 LINE L2 2260 2502 -812 211 307 13 0 chr4 10589176 10589251 -173699411 - MIR SINE MIR -177 85 10 209 326 12 0 chr4 10589712 10589779 -173698883 + MIR SINE MIR 74 145 -63 195 235 226 17 chr4 10590095 10590210 -173698452 - L2 LINE L2 -120 3152 3014 647 251 165 56 chr4 10590995 10591426 -173697236 - MLT1G3 LTR MaLR -3 539 92 182 253 39 54 chr4 10591461 10591569 -173697093 - MIR SINE MIR -64 144 50 254 254 74 96 chr4 10591600 10591801 -173696861 - MIR SINE MIR -35 227 19 182 323 0 16 chr4 10592016 10592078 -173696584 - MIR SINE MIR -109 153 93 346 339 119 0 chr4 10592312 10592489 -173696173 - MIR SINE MIR -14 248 51 218 204 0 0 chr4 10592866 10592910 -173695752 - MIR SINE MIR -61 147 104 353 240 156 7 chr4 10594540 10594694 -173693968 - MIR3 SINE MIR -15 193 17 216 0 0 0 chr4 10596679 10596703 -173691959 + (GA)n Simple_repeat Simple_repeat 2 25 0 408 88 0 0 chr4 10597097 10597154 -173691508 + (CA)n Simple_repeat Simple_repeat 1 57 0 184 311 27 0 chr4 10597242 10597316 -173691346 - L2 LINE L2 -38 3275 3200 1230 264 89 12 chr4 10598770 10599263 -173689399 + MER90 LTR ERV1 84 614 0 433 340 20 40 chr4 10600502 10600752 -173687910 - L2 LINE L2 -825 2489 2245 960 286 92 65 chr4 10600893 10601600 -173687062 - L2 LINE L2 -1449 1865 1140 2412 47 3 10 chr4 10602621 10602920 -173685742 + AluY SINE Alu 1 297 -14 232 270 58 44 chr4 10603159 10603296 -173685366 + HAL1b LINE L1 315 453 -895 1782 318 73 44 chr4 10604284 10604720 -173683942 - ERVL LTR ERVL -2930 2834 2412 2263 115 144 3 chr4 10604720 10605095 -173683567 - MSTA LTR MaLR 0 428 1 1782 318 73 44 chr4 10605095 10605927 -173682735 - ERVL LTR ERVL -3352 2412 1529 2208 68 10 0 chr4 10606417 10606709 -173681953 + AluSq SINE Alu 1 295 -18 212 289 0 0 chr4 10606731 10606783 -173681879 + MIR SINE MIR 189 240 -22 2680 93 8 3 chr4 10607186 10607539 -173681123 + THE1A LTR MaLR 1 355 0 243 240 0 0 chr4 10609198 10609248 -173679414 + L2 LINE L2 3223 3272 0 1362 238 57 59 chr4 10610245 10610774 -173677888 - MER74A LTR ERVL -1 557 30 351 296 106 8 chr4 10611669 10611801 -173676861 + L2 LINE L2 3125 3269 -3 22 0 0 0 chr4 10616321 10616343 -173672319 + AT_rich Low_complexity Low_complexity 1 22 0 1174 240 50 8 chr4 10617201 10617560 -173671102 + L1MB3 LINE L1 5592 5965 -218 755 151 0 43 chr4 10617561 10617700 -173670962 + FLAM_C SINE Alu 1 133 -10 940 149 0 0 chr4 10617742 10617890 -173670772 + L1MB3 LINE L1 6036 6183 0 198 298 125 39 chr4 10618031 10618135 -173670527 - MIR SINE MIR -37 225 113 1755 132 7 15 chr4 10618135 10618408 -173670254 + AluJo SINE Alu 14 284 -28 223 251 194 52 chr4 10619008 10619211 -173669451 + MIR SINE MIR 1 227 -35 1719 163 24 7 chr4 10621100 10621389 -173667273 + AluJb SINE Alu 1 294 -18 280 283 78 56 chr4 10621773 10621953 -173666709 - MIR3 SINE MIR -7 201 18 192 328 102 55 chr4 10623520 10623971 -173664691 - L2 LINE L2 -1229 2085 1614 423 294 128 11 chr4 10624347 10624527 -173664135 + L2 LINE L2 3082 3282 -31 407 219 12 0 chr4 10624541 10624623 -173664039 + FLAM_A SINE Alu 1 83 -59 223 273 38 15 chr4 10624634 10624766 -173663896 + (TA)n Simple_repeat Simple_repeat 1 135 0 191 280 160 0 chr4 10624902 10624977 -173663685 - MIR SINE MIR -79 183 97 182 376 82 0 chr4 10625704 10625789 -173662873 + L2 LINE L2 3204 3295 -18 680 133 9 0 chr4 10826559 10826664 -173461998 + AluJo/FRAM SINE Alu 187 292 -20 365 206 10 20 chr4 10826675 10826777 -173461885 + L1MC/D LINE L1 4926 5026 -1120 2589 185 61 3 chr4 10826779 10827375 -173461287 + L1MC/D LINE L1 5191 5814 -428 873 259 119 55 chr4 10827789 10827980 -173460682 - MLT1F1 LTR MaLR -74 519 342 1887 194 36 12 chr4 10827980 10828398 -173460264 - MSTA LTR MaLR 0 428 1 873 259 119 55 chr4 10828398 10828667 -173459995 - MLT1F1 LTR MaLR -251 342 1 1839 171 0 13 chr4 10828701 10829017 -173459645 + AluJb SINE Alu 1 312 0 1286 133 0 0 chr4 10829028 10829201 -173459461 + AluSg SINE Alu 1 173 -137 230 348 35 7 chr4 10829671 10829812 -173458850 + L3 LINE CR1 1229 1373 -204 2122 138 3 0 chr4 10829872 10830162 -173458500 - AluJb SINE Alu -21 291 1 269 123 5 0 chr4 10830243 10830292 -173458370 - MLT2C1 LTR ERVL -2 395 358 1005 145 0 0 chr4 10830308 10830487 -173458175 + (TGGA)n Simple_repeat Simple_repeat 2 180 0 531 253 188 5 chr4 10830630 10830832 -173457830 - MIR SINE MIR -1 261 23 507 281 98 12 chr4 10831196 10831360 -173457302 - MER5B DNA MER1_type 0 178 1 240 239 30 30 chr4 10831741 10831808 -173456854 + MIR SINE MIR 16 82 -126 1673 167 7 4 chr4 10833194 10833464 -173455198 + AluJo SINE Alu 33 303 -9 232 254 0 28 chr4 10833468 10833539 -173455123 - MER112 DNA MER1_type -121 139 71 887 89 35 84 chr4 10833933 10834111 -173454551 - L1MA5A LINE L1 -3 6294 6126 2413 90 0 0 chr4 10834111 10834410 -173454252 - AluSx SINE Alu -13 299 1 887 89 35 84 chr4 10834410 10834433 -173454229 - L1MA5A LINE L1 -171 6126 6103 2162 156 32 0 chr4 10834433 10834804 -173453858 - L1MA5A LINE L1 -363 5934 5549 1926 124 20 20 chr4 10834806 10835104 -173453558 - AluSq SINE Alu -15 298 1 994 104 8 0 chr4 10835104 10835238 -173453424 - AluSq/x SINE Alu -178 135 1 458 139 0 12 chr4 10835239 10835325 -173453337 - L1MA5A LINE L1 -737 5563 5479 360 315 145 13 chr4 10835628 10835725 -173452937 + L3 LINE CR1 1234 1317 -260 2005 157 0 28 chr4 10835725 10836044 -173452618 + AluJo SINE Alu 1 310 -2 360 315 145 13 chr4 10836044 10836181 -173452481 + L3 LINE CR1 1317 1499 -78 943 226 62 28 chr4 10836587 10836875 -173451787 + MER63B DNA MER1_type 39 336 -100 29 0 0 0 chr4 10836875 10836904 -173451758 + AT_rich Low_complexity Low_complexity 1 29 0 2204 110 4 0 chr4 10836912 10837226 -173451436 + AluSp SINE Alu 1 315 0 251 183 12 0 chr4 10837227 10837309 -173451353 + (TA)n Simple_repeat Simple_repeat 1 83 0 1832 174 3 0 chr4 10837316 10837610 -173451052 - AluJo SINE Alu -17 295 1 454 206 23 30 chr4 10837616 10837747 -173450915 + MER63B DNA MER1_type 304 433 -2 1462 140 34 45 chr4 10837987 10838279 -173450383 + THE1C LTR MaLR 87 375 0 218 259 0 12 chr4 10838279 10838364 -173450298 + (CA)n Simple_repeat Simple_repeat 1 84 0 2052 113 3 3 chr4 10838427 10838747 -173449915 + AluSx SINE Alu 1 320 0 307 307 106 30 chr4 10838764 10839028 -173449634 + L1ME4a LINE L1 5837 6120 -1 1759 120 76 10 chr4 10840354 10840655 -173448007 + LTR24C LTR ERV1 1 321 -314 430 317 158 19 chr4 10840661 10840983 -173447679 + MLT1K LTR MaLR 110 476 -112 437 146 10 87 chr4 10841008 10841111 -173447551 + MER4D LTR ERV1 1 95 -808 207 0 0 0 chr4 10841211 10841234 -173447428 + (A)n Simple_repeat Simple_repeat 1 23 0 1860 154 13 35 chr4 10841312 10841624 -173447038 + AluSx SINE Alu 5 309 -3 1019 175 82 39 chr4 10841797 10841929 -173446733 + AluJo SINE Alu 1 147 -165 2369 113 0 0 chr4 10841929 10842240 -173446422 + AluSx SINE Alu 1 311 -1 1019 175 82 39 chr4 10842240 10842313 -173446349 + AluJo SINE Alu 147 215 -97 284 367 11 0 chr4 10842313 10842403 -173446259 - LTR16C LTR ERVL -287 204 114 224 285 86 99 chr4 10842555 10842927 -173445735 + L2 LINE L2 2858 3224 -48 2494 137 23 44 chr4 10842947 10843420 -173445242 - LTR24 LTR ERV1 0 467 5 266 247 206 16 chr4 10843469 10843663 -173444999 - L2 LINE L2 -235 3037 2807 2436 94 3 0 chr4 10844715 10845023 -173443639 + AluSx SINE Alu 1 309 -3 1326 209 38 59 chr4 10845081 10845454 -173443208 + MER47A DNA MER2_type 1 365 -1 441 230 27 61 chr4 10845459 10845607 -173443055 - L2 LINE L2 -18 3295 3153 2287 77 38 0 chr4 10847243 10847530 -173441132 + AluSc SINE Alu 1 298 -11 1775 176 6 38 chr4 10848101 10848419 -173440243 + AluJo SINE Alu 1 308 -4 1404 208 32 45 chr4 10848666 10848875 -173439787 - MLT1A2 LTR MaLR 0 374 171 2190 111 42 0 chr4 10848875 10849164 -173439498 - AluSc SINE Alu -8 301 1 1404 208 32 45 chr4 10849164 10849333 -173439329 - MLT1A2 LTR MaLR -203 171 1 210 254 0 17 chr4 10849603 10849662 -173439000 + MIR3 SINE MIR 123 180 -28 1575 199 95 34 chr4 10850040 10850564 -173438098 + MER89 LTR ERV1 1 556 -3 1023 121 0 0 chr4 10850830 10850962 -173437700 + AluSp SINE Alu 1 132 -181 2033 111 7 0 chr4 10850964 10851235 -173437427 + AluSp SINE Alu 1 273 -40 2002 95 0 0 chr4 10851335 10851578 -173437084 - AluSq SINE Alu -70 243 1 189 107 0 0 chr4 10851633 10851661 -173437001 + (TCC)n Simple_repeat Simple_repeat 2 29 0 854 296 21 8 chr4 10851677 10851920 -173436742 - MIR SINE MIR -6 256 11 275 337 32 4 chr4 10852008 10852131 -173436531 - MIR SINE MIR -65 143 20 1886 117 29 42 chr4 10852275 10852584 -173436078 - AluSx SINE Alu -7 305 1 531 69 0 0 chr4 10852639 10852711 -173435951 + (TGGA)n Simple_repeat Simple_repeat 1 72 0 217 299 26 26 chr4 10852771 10852848 -173435814 - MIR3 SINE MIR -31 177 101 2108 128 42 31 chr4 10853286 10853646 -173435016 - THE1B LTR MaLR 0 364 1 192 294 86 64 chr4 10854860 10855047 -173433615 - L2 LINE L2 -1262 2052 1862 225 263 0 18 chr4 10855242 10855299 -173433363 + GA-rich Low_complexity Low_complexity 1 56 0 365 314 190 0 chr4 10855385 10855611 -173433051 - L2 LINE L2 0 3313 3045 342 323 56 45 chr4 10855765 10856031 -173432631 - L2 LINE L2 -15 3257 2989 1973 128 6 38 chr4 10856054 10856373 -173432289 + AluSx SINE Alu 1 309 -3 324 308 121 5 chr4 10856376 10856569 -173432093 - MIR SINE MIR -11 251 34 687 177 18 0 chr4 10856745 10856909 -173431753 + (TCCA)n Simple_repeat Simple_repeat 1 167 0 383 176 24 0 chr4 10856974 10857059 -173431603 + (TCCA)n Simple_repeat Simple_repeat 4 90 0 209 270 16 0 chr4 10857094 10857157 -173431505 + (TCCA)n Simple_repeat Simple_repeat 2 65 0 318 325 53 18 chr4 10857189 10857303 -173431359 - L2 LINE L2 -22 3250 3133 180 343 0 14 chr4 10857378 10857448 -173431214 - L2 LINE L2 -3 3269 3201 2392 106 0 3 chr4 10857448 10857759 -173430903 - AluSx SINE Alu -2 310 1 231 183 267 0 chr4 10857811 10857871 -173430791 - MIR SINE MIR -62 146 71 189 147 0 0 chr4 10858685 10858719 -173429943 + (GGGAGA)n Simple_repeat Simple_repeat 3 36 0 180 125 0 0 chr4 10858720 10858752 -173429910 + (TG)n Simple_repeat Simple_repeat 1 32 0 266 274 65 40 chr4 10858825 10858949 -173429713 + L2 LINE L2 3187 3313 0 257 196 0 54 chr4 10859091 10859152 -173429510 + polypyrimidine Low_complexity Low_complexity 1 57 0 2326 109 7 0 chr4 10859152 10859456 -173429206 - AluSx SINE Alu -6 306 1 24 0 0 0 chr4 10860095 10860119 -173428543 + AT_rich Low_complexity Low_complexity 1 24 0 2484 83 3 10 chr4 10860265 10860579 -173428083 - AluSx SINE Alu 0 312 1 1912 134 28 3 chr4 10861516 10861823 -173426839 - AluSx SINE Alu 0 314 1 995 74 0 0 chr4 10862009 10862130 -173426532 + AluSc SINE Alu 175 295 -14 274 315 0 0 chr4 10862482 10862555 -173426107 + MIR3 SINE MIR 104 176 -32 253 200 33 33 chr4 10863043 10863103 -173425559 - MIR SINE MIR -67 141 82 1985 144 3 19 chr4 10864966 10865279 -173423383 - AluJb SINE Alu -4 308 1 368 274 96 7 chr4 10866807 10866942 -173421720 - L1MC/D LINE L1 -2211 5597 5451 2348 99 0 3 chr4 10866958 10867261 -173421401 + AluSx SINE Alu 1 302 -10 216 373 27 18 chr4 10867264 10867393 -173421269 - MIR SINE MIR -61 147 20 239 206 14 14 chr4 10867421 10867494 -173421168 + (TA)n Simple_repeat Simple_repeat 1 73 0 4638 67 18 6 chr4 10868178 10868808 -173419854 + L1PA10 LINE L1 5532 6168 0 286 262 49 31 chr4 10868833 10869035 -173419627 - ALR/Alpha Satellite centromeric 0 205 1 208 340 57 0 chr4 10870402 10870508 -173418154 + MIR SINE MIR 33 144 -64 279 310 90 7 chr4 10871018 10871173 -173417489 - L1ME4a LINE L1 -108 6013 5846 405 331 17 29 chr4 10871237 10871412 -173417250 - MIR SINE MIR -4 258 86 25 51 0 0 chr4 10872516 10872555 -173416107 + AT_rich Low_complexity Low_complexity 1 39 0 319 253 50 104 chr4 10872715 10872897 -173415765 - MIR SINE MIR -74 188 17 436 246 90 0 chr4 10872948 10873070 -173415592 - FLAM_A SINE Alu 0 133 1 544 126 39 19 chr4 10873071 10873174 -173415488 + L1M2 LINE L1 5337 5441 -856 2235 89 0 0 chr4 10873287 10873557 -173415105 - AluY SINE Alu -39 272 3 1737 155 73 9 chr4 10873562 10873903 -173414759 + MER4D LTR ERV1 541 903 0 266 224 92 13 chr4 10873903 10873965 -173414697 + MLT1K LTR MaLR 505 572 -16 190 0 0 0 chr4 10875018 10875039 -173413623 + (TTA)n Simple_repeat Simple_repeat 2 180 0 2101 90 11 0 chr4 10875039 10875319 -173413343 - AluSx SINE Alu -29 283 13 197 260 55 14 chr4 10878611 10878684 -173409978 - MIR3 SINE MIR -23 185 110 422 209 228 0 chr4 10878759 10878917 -173409745 + MER96B DNA MER1_type? 224 417 0 2099 112 7 0 chr4 10878991 10879287 -173409375 - AluSx SINE Alu -14 298 1 1656 175 20 3 chr4 10879297 10879594 -173409068 - AluJo SINE Alu -10 302 1 456 153 0 14 chr4 10879621 10879693 -173408969 - FLAM_A SINE Alu -25 117 47 776 199 0 6 chr4 10880132 10880313 -173408349 + CT-rich Low_complexity Low_complexity 1 180 0 1885 251 82 28 chr4 10880470 10881138 -173407524 - L1MC3 LINE L1 -190 7595 6892 210 219 62 0 chr4 10881958 10882022 -173406640 + MIR SINE MIR 65 132 -76 2194 96 6 13 chr4 10882145 10882458 -173406204 - AluSx SINE Alu -1 311 1 1576 194 20 0 chr4 10883231 10883530 -173405132 - AluJo SINE Alu -5 307 3 655 250 66 5 chr4 10883898 10884094 -173404568 - MLT1B LTR MaLR 0 390 183 517 219 52 24 chr4 10884249 10884427 -173404235 - MLT1B LTR MaLR -196 178 1 843 183 0 0 chr4 10885612 10885980 -173402682 + (CTCA)n Simple_repeat Simple_repeat 1 368 0 234 105 0 0 chr4 10886831 10886869 -173401793 + (A)n Simple_repeat Simple_repeat 1 38 0 604 288 59 5 chr4 10888808 10888983 -173399679 + MIR SINE MIR 13 204 -58 2211 80 3 10 chr4 10888983 10889283 -173399379 - AluSx SINE Alu -14 298 1 604 288 59 5 chr4 10889283 10889326 -173399336 + MIR SINE MIR 204 243 -19 256 111 37 74 chr4 10891495 10891603 -173397059 + (TGGG)n Simple_repeat Simple_repeat 3 106 0 338 350 97 14 chr4 10893058 10893275 -173395387 + MIR SINE MIR 16 250 -12 284 207 0 11 chr4 10893289 10893376 -173395286 + (CA)n Simple_repeat Simple_repeat 2 87 0 892 257 20 76 chr4 10893377 10893731 -173394931 + MER2 DNA MER2_type 5 338 -7 394 222 8 8 chr4 10893746 10893863 -173394799 + (CA)n Simple_repeat Simple_repeat 2 118 0 335 309 11 17 chr4 10893945 10894126 -173394536 + (CA)n Simple_repeat Simple_repeat 1 180 0 214 292 115 15 chr4 10895016 10895146 -173393516 + L2 LINE L2 3169 3311 -2 1939 122 0 0 chr4 10895507 10895785 -173392877 - AluSx SINE Alu -17 295 18 987 189 25 5 chr4 10895930 10896131 -173392531 - MER46A DNA MER2_type 0 236 32 284 356 110 0 chr4 10896176 10896322 -173392340 + MIR3 SINE MIR 30 191 -17 1981 99 67 0 chr4 10896711 10896993 -173391669 - AluSq SINE Alu -12 301 1 253 348 22 23 chr4 10897379 10897583 -173391079 - MIR3 SINE MIR -56 206 6 1642 148 25 18 chr4 10898724 10899038 -173389624 + AluJo SINE Alu 1 316 0 521 227 111 29 chr4 10899085 10899257 -173389405 + MIR SINE MIR 74 259 -3 2094 124 3 0 chr4 10900028 10900334 -173388328 - AluSx SINE Alu -5 307 1 262 134 239 15 chr4 10900482 10900549 -173388113 + L2 LINE L2 3232 3313 0 206 351 99 13 chr4 10902710 10902861 -173385801 - MIR3 SINE MIR -6 202 39 1847 145 41 0 chr4 10903727 10904017 -173384645 - AluSx SINE Alu -9 303 2 366 291 114 50 chr4 10904114 10904595 -173384067 - L2 LINE L2 -813 2501 1990 807 185 0 0 chr4 10904599 10904729 -173383933 + FLAM_C SINE Alu 1 130 -3 180 213 43 43 chr4 10904743 10904790 -173383872 - L2 LINE L2 -346 2967 2921 2239 74 0 17 chr4 10904930 10905228 -173383434 - AluSx SINE Alu -19 293 1 39 60 0 0 chr4 10905604 10905671 -173382991 + GC_rich Low_complexity Low_complexity 1 67 0 28 0 0 0 chr4 10905764 10905792 -173382870 + GC_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr4 10906659 10906687 -173381975 + GC_rich Low_complexity Low_complexity 1 28 0 2262 93 0 0 chr4 10907762 10908063 -173380599 + AluSx SINE Alu 1 301 -11 211 281 85 0 chr4 10908112 10908194 -173380468 + MIR3 SINE MIR 113 201 -7 2184 111 0 0 chr4 10908668 10908966 -173379696 + AluY SINE Alu 1 298 -13 860 195 5 56 chr4 10909049 10909244 -173379418 + FRAM SINE Alu 1 176 0 332 231 0 100 chr4 10910217 10910347 -173378315 + MIR SINE MIR 90 205 -57 189 341 121 0 chr4 10910958 10911049 -173377613 - L2 LINE L2 -13 3259 3158 758 232 211 10 chr4 10911573 10911862 -173376800 - MLT1E LTR MaLR 0 593 247 583 118 0 32 chr4 10911956 10912049 -173376613 - AluSg/x SINE Alu -13 297 208 2142 109 0 0 chr4 10912206 10912499 -173376163 - AluSg SINE Alu -9 301 9 2240 71 14 3 chr4 10913090 10913386 -173375276 + AluY SINE Alu 1 299 -12 1449 182 41 10 chr4 10913566 10913857 -173374805 + AluJo SINE Alu 3 302 -10 438 286 26 32 chr4 10913920 10914074 -173374588 - HAL1 LINE L1 -2 2505 2353 1841 145 7 3 chr4 10914197 10914486 -173374176 + AluSx SINE Alu 1 290 -22 334 208 65 0 chr4 10914520 10914597 -173374065 + MER21B LTR ERV1 16 97 -766 1740 233 32 68 chr4 10914603 10915101 -173373561 + MER21B LTR ERV1 19 498 -365 445 261 200 11 chr4 10915101 10915281 -173373381 - MIR SINE MIR -45 217 4 309 248 132 33 chr4 10916295 10916416 -173372246 + MIR SINE MIR 14 146 -116 2305 89 0 0 chr4 10916561 10916863 -173371799 + AluSg SINE Alu 1 302 -8 886 131 0 0 chr4 10917582 10917704 -173370958 - FLAM_C SINE Alu -11 122 1 745 271 114 0 chr4 10917755 10917965 -173370697 - MIR SINE MIR -18 244 11 1851 114 4 0 chr4 10918240 10918511 -173370151 + AluSx SINE Alu 30 301 -11 330 244 167 0 chr4 10919501 10919591 -173369071 + L2 LINE L2 3168 3272 0 358 313 42 14 chr4 10919728 10919872 -173368790 + L2 LINE L2 3125 3272 0 213 152 0 0 chr4 10919876 10919909 -173368753 - L2 LINE L2 -8 3305 3273 196 268 49 37 chr4 10921785 10921867 -173366795 - MIR3 SINE MIR -111 97 15 532 315 82 0 chr4 10923089 10923273 -173365389 + MER58A DNA MER1_type 23 221 -3 2221 132 3 0 chr4 10923913 10924224 -173364438 - AluSx SINE Alu 0 312 1 362 272 26 9 chr4 10924370 10924484 -173364178 - MIR SINE MIR -119 143 28 347 214 71 20 chr4 10925988 10926086 -173362576 + MIR SINE MIR 100 202 -60 630 157 21 0 chr4 10926562 10926702 -173361960 + (TCCA)n Simple_repeat Simple_repeat 3 145 0 2457 81 3 0 chr4 10927231 10927528 -173361134 - AluSx SINE Alu -14 298 1 372 333 154 5 chr4 10927528 10927723 -173360939 - MIR SINE MIR -16 246 23 336 271 201 7 chr4 10927922 10928066 -173360596 - MIR SINE MIR -71 191 20 562 333 131 47 chr4 10928085 10928278 -173360384 - L1MDb LINE L1 -3371 3035 2860 1856 144 23 26 chr4 10928278 10928584 -173360078 - AluSx SINE Alu -7 305 1 562 333 131 47 chr4 10928584 10928969 -173359693 - L1MDb LINE L1 -3546 2860 2408 192 237 34 34 chr4 10929122 10929181 -173359481 - L2 LINE L2 -1 3312 3254 1902 122 56 4 chr4 10929417 10929687 -173358975 - AluSx SINE Alu -24 288 5 207 0 0 0 chr4 10929703 10929726 -173358936 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 194 213 64 0 chr4 10932428 10932475 -173356187 - MIR3 SINE MIR -47 161 112 1969 145 24 0 chr4 10932607 10932903 -173355759 + AluJo SINE Alu 1 303 -9 308 272 144 30 chr4 10932918 10933120 -173355542 + MER102a DNA MER1_type 98 322 -8 5945 0 0 0 chr4 10933304 10933981 -173354681 - L1HS LINE L1 0 6155 5479 2481 12 0 0 chr4 10933976 10934380 -173354282 + L1P1 LINE L1 5086 5489 -666 * 334 252 37 30 chr4 10935078 10935213 -173353449 - MIR3 SINE MIR -43 165 30 755 234 12 0 chr4 10935331 10935498 -173353164 + MER5A DNA MER1_type 3 171 -18 2475 212 70 107 chr4 10935631 10936267 -173352395 - L1MDb LINE L1 -4233 2173 1515 2330 107 0 13 chr4 10936267 10936576 -173352086 - AluSc SINE Alu -4 305 1 2475 212 70 107 chr4 10936576 10937078 -173351584 - L1MDb LINE L1 -4891 1515 1030 2330 92 3 16 chr4 10937078 10937392 -173351270 - AluSp SINE Alu -3 310 1 2475 212 70 107 chr4 10937392 10937752 -173350910 - L1MDb LINE L1 -5376 1030 658 213 225 62 25 chr4 10938189 10938269 -173350393 + MER5B DNA MER1_type 96 178 0 2238 99 27 0 chr4 10938270 10938564 -173350098 - AluSp SINE Alu -11 302 1 392 308 20 41 chr4 10938644 10938790 -173349872 - MIR3 SINE MIR -63 145 3 303 214 80 45 chr4 10939588 10939700 -173348962 - MIR SINE MIR -112 150 35 190 83 139 0 chr4 10939709 10939745 -173348917 - MIR SINE MIR -165 97 57 217 196 22 0 chr4 10941184 10941230 -173347432 + (TA)n Simple_repeat Simple_repeat 2 48 0 330 248 0 99 chr4 10941230 10941331 -173347331 - L1MC4 LINE L1 -1339 6703 6613 340 158 12 12 chr4 10941346 10941428 -173347234 + (CA)n Simple_repeat Simple_repeat 2 83 0 684 201 66 1 chr4 10941584 10941755 -173346907 - L1MD2 LINE L1 0 8042 6255 628 268 128 22 chr4 10941769 10941812 -173346850 - L2 LINE L2 -640 2674 2637 2191 112 10 3 chr4 10941812 10942108 -173346554 - AluSq SINE Alu -13 300 3 628 268 128 22 chr4 10942108 10942377 -173346285 - L2 LINE L2 -677 2637 2329 2153 111 3 49 chr4 10942404 10942728 -173345934 + AluSx SINE Alu 3 311 -1 253 253 325 6 chr4 10943088 10943254 -173345408 - L2 LINE L2 -1015 2299 2081 259 245 138 13 chr4 10943646 10943805 -173344857 - L2 LINE L2 -1370 1944 1766 2202 87 37 10 chr4 10944029 10944328 -173344334 + AluSp SINE Alu 1 307 -6 181 270 72 63 chr4 10944656 10944767 -173343895 - MIR SINE MIR -3 259 148 220 306 162 51 chr4 10944814 10945030 -173343632 - MIR SINE MIR -1 261 22 791 234 57 0 chr4 10945819 10946011 -173342651 - MER58A DNA MER1_type 0 224 22 335 216 62 0 chr4 10946366 10946463 -173342199 + MER5A DNA MER1_type 7 109 -80 2618 53 0 3 chr4 10946584 10946886 -173341776 - AluY SINE Alu -10 301 1 2228 114 0 19 chr4 10948103 10948420 -173340242 - AluSq SINE Alu -2 311 1 207 0 0 0 chr4 10948420 10948443 -173340219 + (T)n Simple_repeat Simple_repeat 1 23 0 2018 229 118 53 chr4 10948854 10950479 -173338183 - L1ME1 LINE L1 -108 6058 4345 304 159 43 0 chr4 10950495 10950564 -173338098 - L1MA10 LINE L1 -7 6327 6256 2095 84 32 21 chr4 10950618 10950902 -173337760 - AluSc SINE Alu -2 307 21 1128 238 165 36 chr4 10950959 10951101 -173337561 - L1ME1 LINE L1 -2273 3873 3751 2245 121 0 3 chr4 10951101 10951406 -173337256 + AluSx SINE Alu 4 307 -5 1128 238 165 36 chr4 10951406 10951784 -173336878 - L1ME1 LINE L1 -2395 3751 3286 2231 119 0 0 chr4 10952063 10952358 -173336304 + AluSx SINE Alu 1 295 -17 267 330 0 29 chr4 10953922 10954025 -173334637 - MIR SINE MIR -82 180 81 261 278 93 117 chr4 10954539 10954982 -173333680 - L2 LINE L2 -4 3268 2837 198 0 0 0 chr4 10956019 10956041 -173332621 + (T)n Simple_repeat Simple_repeat 1 22 0 183 247 186 31 chr4 10956110 10956207 -173332455 - L2 LINE L2 -20 3252 3141 2387 113 0 0 chr4 10956473 10956784 -173331878 + AluSx SINE Alu 1 311 -1 220 229 29 43 chr4 10957585 10957655 -173331007 + MIR SINE MIR 33 101 -107 2415 86 0 7 chr4 10957765 10958066 -173330596 + AluY SINE Alu 1 299 -12 231 114 0 0 chr4 10958109 10958144 -173330518 + (CAA)n Simple_repeat Simple_repeat 1 35 0 3218 166 54 26 chr4 10958200 10958703 -173329959 + MER39 LTR ERV1 1 489 -218 2262 109 7 0 chr4 10958703 10959006 -173329656 + AluSp SINE Alu 1 305 -8 2015 150 0 3 chr4 10959013 10959313 -173329349 + AluJo SINE Alu 1 299 -13 3218 166 54 26 chr4 10959313 10959489 -173329173 + MER39 LTR ERV1 494 707 0 1501 200 67 9 chr4 10959549 10959879 -173328783 + MLT1B LTR MaLR 1 349 -41 207 188 0 0 chr4 10960593 10960641 -173328021 + (TA)n Simple_repeat Simple_repeat 1 48 0 237 33 0 0 chr4 10960782 10960812 -173327850 + (CA)n Simple_repeat Simple_repeat 1 30 0 198 0 0 0 chr4 10960815 10960837 -173327825 + (TC)n Simple_repeat Simple_repeat 1 22 0 2303 75 7 0 chr4 10961514 10961830 -173326832 + AluSg SINE Alu 1 318 0 1370 187 133 3 chr4 10962830 10963162 -173325500 + MLT1B LTR MaLR 5 379 -11 465 66 0 0 chr4 10963499 10963560 -173325102 + (TCC)n Simple_repeat Simple_repeat 2 62 0 359 244 27 54 chr4 10964589 10964740 -173323922 - MIR SINE MIR -44 164 10 345 313 62 35 chr4 10965188 10965415 -173323247 + L2 LINE L2 3034 3266 -6 3033 126 43 32 chr4 10965535 10965874 -173322788 + MER4B LTR ERV1 1 335 -444 2121 134 3 0 chr4 10965874 10966173 -173322489 - AluSx SINE Alu -12 300 1 3033 126 43 32 chr4 10966173 10966432 -173322230 + MER4B LTR ERV1 335 779 0 3452 125 81 23 chr4 10967380 10967412 -173321250 + LTR9B LTR ERV1 1 30 -614 2296 95 0 52 chr4 10967412 10967738 -173320924 + AluSc SINE Alu 1 309 0 3452 125 81 23 chr4 10967738 10968314 -173320348 + LTR9B LTR ERV1 30 644 0 448 113 0 38 chr4 10969216 10969296 -173319366 + MER4A LTR ERV1 22 98 -566 1697 117 3 80 chr4 10969296 10969656 -173319006 + MER4A LTR ERV1 261 664 0 1206 237 118 9 chr4 10969795 10970133 -173318529 + MSTD LTR MaLR 14 388 -8 250 313 111 55 chr4 10970521 10970738 -173317924 - L2 LINE L2 -24 3248 3020 250 325 82 72 chr4 10971144 10971338 -173317324 + MIR SINE MIR 65 260 -2 234 295 93 43 chr4 10971653 10971792 -173316870 + L2 LINE L2 3126 3271 -1 23 0 0 0 chr4 10971936 10971959 -173316703 + AT_rich Low_complexity Low_complexity 1 23 0 1072 137 0 0 chr4 10971976 10972129 -173316533 + AluSq SINE Alu 1 153 -160 1992 144 43 0 chr4 10972322 10972621 -173316041 - AluSx SINE Alu 0 312 1 274 306 158 20 chr4 10972700 10972896 -173315766 - L1ME LINE L1 -477 5644 5422 867 212 100 111 chr4 10973898 10974350 -173314312 + MER31B LTR ERV1 20 466 0 1708 218 48 88 chr4 10974442 10974854 -173313808 + MER34C LTR ERV1 1 381 -204 2170 103 0 31 chr4 10974854 10975173 -173313489 + AluSx SINE Alu 1 309 -3 1708 218 48 88 chr4 10975173 10975370 -173313292 + MER34C LTR ERV1 381 585 0 239 193 18 35 chr4 10976623 10976680 -173311982 + G-rich Low_complexity Low_complexity 1 56 0 245 301 155 29 chr4 10977290 10977529 -173311133 + L2 LINE L2 2913 3181 -91 2327 60 3 17 chr4 10977672 10977974 -173310688 - AluY SINE Alu -13 298 1 2265 82 0 7 chr4 10978308 10978600 -173310062 - AluSc SINE Alu -19 290 1 545 270 103 0 chr4 10978678 10978863 -173309799 - MIR SINE MIR -50 212 9 1041 222 31 38 chr4 10979098 10979490 -173309172 + LTR10B LTR ERV1 214 505 0 1285 194 150 19 chr4 10979490 10979851 -173308811 + MSTC LTR MaLR 21 428 0 494 274 203 0 chr4 10979875 10980141 -173308521 + L1ME3A LINE L1 5841 6160 -10 300 167 0 0 chr4 10980145 10980193 -173308469 + L1MB5 LINE L1 5004 5051 -1095 1693 176 0 7 chr4 10980203 10980487 -173308175 + AluJo SINE Alu 1 282 -30 1436 209 20 22 chr4 10980500 10980858 -173307804 + L1MB5 LINE L1 5315 5671 -509 2038 139 17 0 chr4 10980877 10981179 -173307483 + AluSx SINE Alu 1 307 -5 331 208 0 0 chr4 10981185 10981257 -173307405 + G-rich Low_complexity Low_complexity 3 74 0 747 101 0 0 chr4 10981265 10981364 -173307298 + AluY SINE Alu 10 108 -203 926 66 0 0 chr4 10981466 10981588 -173307074 + AluY SINE Alu 173 294 -17 771 112 0 0 chr4 10981588 10981704 -173306958 + (GGAA)n Simple_repeat Simple_repeat 3 118 0 2023 209 48 6 chr4 10981710 10982193 -173306469 + L1MB5 LINE L1 5672 6174 0 569 329 42 19 chr4 10982207 10982423 -173306239 - MIR SINE MIR -3 259 39 180 317 79 10 chr4 10983017 10983118 -173305544 + MIR SINE MIR 42 149 -59 222 205 26 13 chr4 10984820 10984976 -173303686 + (TG)n Simple_repeat Simple_repeat 2 159 0 420 237 28 11 chr4 10985050 10985227 -173303435 + (TG)n Simple_repeat Simple_repeat 1 180 0 406 203 10 29 chr4 10985280 10985597 -173303065 + (TG)n Simple_repeat Simple_repeat 1 311 0 201 348 22 0 chr4 10986009 10986101 -173302561 + GA-rich Low_complexity Low_complexity 2 95 0 328 287 22 52 chr4 10988992 10989075 -173299587 + L1MC/D LINE L1 5303 5382 -2426 2172 135 3 0 chr4 10989075 10989387 -173299275 + AluSq SINE Alu 1 313 0 328 287 22 52 chr4 10989387 10989439 -173299223 + L1MC/D LINE L1 5382 5434 -2374 1201 203 13 4 chr4 10989442 10989674 -173298988 + AluJo SINE Alu 2 235 -77 1401 88 0 0 chr4 10989778 10989959 -173298703 + AluSg/x SINE Alu 128 308 -2 463 222 153 11 chr4 10989962 10990151 -173298511 + LTR48B LTR ERV1 429 644 0 1993 83 0 76 chr4 10990654 10990979 -173297683 + AluSc SINE Alu 1 302 0 187 319 43 29 chr4 10991599 10991668 -173296994 - L3b LINE CR1 -51 1532 1463 454 255 50 37 chr4 10991676 10991837 -173296825 + MIR SINE MIR 21 183 -79 1760 220 69 21 chr4 10991840 10992263 -173296399 + LTR47B LTR ERVL 1 443 0 1876 143 6 13 chr4 10992538 10992852 -173295810 + AluSx SINE Alu 1 312 0 2107 129 0 3 chr4 10993000 10993303 -173295359 + AluSq SINE Alu 1 302 -11 2521 62 0 0 chr4 10993303 10993608 -173295054 + AluY SINE Alu 1 305 -6 191 344 32 0 chr4 10994126 10994219 -173294443 + L3 LINE CR1 1131 1226 -351 354 288 104 8 chr4 10994297 10994422 -173294240 + MLT1I LTR MaLR 68 204 -205 192 253 172 11 chr4 10994691 10994778 -173293884 + L2 LINE L2 3168 3268 -4 634 257 183 0 chr4 10994892 10995067 -173293595 - MER3 DNA MER1_type 0 209 3 2028 110 13 7 chr4 10995256 10995566 -173293096 + AluSx SINE Alu 1 312 0 340 338 32 32 chr4 10995815 10996031 -173292631 + L2 LINE L2 2841 3056 -257 298 286 80 9 chr4 10998298 10998410 -173290252 - MIR SINE MIR -55 153 34 201 325 36 0 chr4 10998802 10998885 -173289777 + MIR SINE MIR 98 183 -79 2053 241 13 53 chr4 10999297 10999903 -173288759 + L1MB5 LINE L1 5557 6138 -36 2098 109 31 0 chr4 10999907 11000201 -173288461 + AluSx SINE Alu 1 303 -9 1875 148 0 4 chr4 11000224 11000522 -173288140 + AluJb SINE Alu 5 301 0 351 0 0 0 chr4 11000779 11000818 -173287844 + (CA)n Simple_repeat Simple_repeat 2 40 0 423 237 0 0 chr4 11002546 11002639 -173286023 - MIR SINE MIR -133 129 37 250 335 150 21 chr4 11003376 11003609 -173285053 + L2 LINE L2 2968 3230 -42 333 0 0 0 chr4 11004124 11004161 -173284501 + (TG)n Simple_repeat Simple_repeat 2 38 0 339 317 55 23 chr4 11004161 11004277 -173284385 - L2 LINE L2 -285 2987 2876 2088 133 26 0 chr4 11004277 11004579 -173284083 + AluSg SINE Alu 1 310 0 339 317 55 23 chr4 11004579 11004681 -173283981 - L2 LINE L2 -396 2876 2755 1432 233 36 3 chr4 11004857 11005192 -173283470 + MLT2C1 LTR ERVL 1 346 -51 909 174 0 0 chr4 11005222 11005462 -173283200 + (TCCA)n Simple_repeat Simple_repeat 1 240 0 260 286 12 0 chr4 11006832 11006916 -173281746 - L1ME3A LINE L1 -70 6100 6016 189 264 18 73 chr4 11007107 11007217 -173281445 - L2 LINE L2 -220 3052 2949 247 294 39 59 chr4 11007555 11007657 -173281005 - MIR SINE MIR -71 191 92 533 170 18 0 chr4 11008331 11008444 -173280218 + MIR SINE MIR 37 157 -61 696 250 58 10 chr4 11009230 11009438 -173279224 - L1MD2 LINE L1 -4 6355 6138 186 133 0 0 chr4 11009438 11009468 -173279194 + (CGTG)n Simple_repeat Simple_repeat 3 32 0 446 271 7 0 chr4 11011606 11011750 -173276912 + (TG)n Simple_repeat Simple_repeat 2 146 0 255 369 87 0 chr4 11011906 11012101 -173276561 + MIR SINE MIR 20 231 -31 189 0 0 0 chr4 11012427 11012448 -173276214 + (TGAA)n Simple_repeat Simple_repeat 2 22 0 698 204 115 5 chr4 11012627 11012818 -173275844 + MER20 DNA MER1_type 1 212 -7 264 220 110 0 chr4 11012890 11012981 -173275681 + MIR SINE MIR 21 121 -141 2044 122 24 0 chr4 11016035 11016330 -173272332 - AluSx SINE Alu -10 302 1 349 288 176 7 chr4 11018118 11018271 -173270391 + MIR SINE MIR 58 236 -26 459 286 51 60 chr4 11018378 11018612 -173270050 - MIR SINE MIR -17 245 14 742 172 7 7 chr4 11018678 11018829 -173269833 - MER96B DNA MER1_type? -238 179 29 2194 122 7 0 chr4 11019138 11019441 -173269221 + AluSx SINE Alu 1 305 -7 212 167 0 0 chr4 11019509 11019545 -173269117 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 267 304 76 0 chr4 11019981 11020073 -173268589 + MIR SINE MIR 77 175 -87 1544 285 35 59 chr4 11020195 11020956 -173267706 - L1ME1 LINE L1 -67 6099 5357 308 224 35 35 chr4 11020962 11021047 -173267615 + L1MCa LINE L1 1980 2064 -4362 370 253 70 58 chr4 11021061 11021302 -173267360 + L1MCa LINE L1 1907 2132 -4294 299 144 65 0 chr4 11021315 11021468 -173267194 + (TA)n Simple_repeat Simple_repeat 1 163 0 390 129 31 37 chr4 11021483 11021646 -173267016 + (TATAA)n Simple_repeat Simple_repeat 3 164 0 217 64 85 0 chr4 11021648 11021695 -173266967 + (TA)n Simple_repeat Simple_repeat 1 51 0 2249 118 0 0 chr4 11021695 11021983 -173266679 - AluSx SINE Alu -24 288 1 341 207 21 129 chr4 11021983 11022008 -173266654 - L1ME1 LINE L1 -776 5370 5344 742 227 72 139 chr4 11022008 11022506 -173266156 + MER4C LTR ERV1 1 465 0 341 207 21 129 chr4 11022506 11022533 -173266129 - L1ME1 LINE L1 -802 5344 5316 2260 100 0 17 chr4 11022533 11022834 -173265828 - AluSx SINE Alu -16 296 1 341 207 21 129 chr4 11022834 11022920 -173265742 - L1ME1 LINE L1 -830 5316 5246 351 293 20 0 chr4 11023014 11023152 -173265510 - L1MEc LINE L1 -4501 1739 1573 * 601 191 112 7 chr4 11023134 11023286 -173265376 - L1MB8 LINE L1 0 6178 6011 * 1359 288 95 7 chr4 11023284 11023986 -173264676 - L1MEc LINE L1 -4754 1642 879 1920 194 61 27 chr4 11023988 11024432 -173264230 - LTR2B LTR ERV1 0 490 32 338 115 0 16 chr4 11024508 11024569 -173264093 + MADE1 DNA Mariner 21 80 0 252 56 0 28 chr4 11024582 11024618 -173264044 + (TCCC)n Simple_repeat Simple_repeat 2 36 0 1953 178 10 0 chr4 11024618 11025089 -173263573 - AluJo SINE Alu 0 474 1 502 288 93 91 chr4 11025096 11025251 -173263411 - L1MEc LINE L1 -5578 818 665 726 154 8 0 chr4 11025251 11025368 -173263294 - FLAM_C SINE Alu -15 118 1 502 288 93 91 chr4 11025368 11025972 -173262690 - L1MEc LINE L1 -5731 665 57 188 139 0 47 chr4 11026690 11026733 -173261929 + (GGGA)n Simple_repeat Simple_repeat 1 41 0 208 300 71 0 chr4 11027374 11027444 -173261218 - L2 LINE L2 -25 3288 3214 694 236 16 6 chr4 11027966 11028148 -173260514 - Charlie2 DNA MER1_type -38 2824 2641 213 278 48 2 chr4 11078877 11078940 -173209722 - MIR SINE MIR -110 98 37 182 214 0 24 chr4 11079150 11079192 -173209470 - MIR SINE MIR -111 151 111 1606 144 90 7 chr4 11079411 11079689 -173208973 + AluJo SINE Alu 2 302 -10 805 261 105 30 chr4 11079755 11080197 -173208465 + MLT1C LTR MaLR 1 498 -7 192 163 0 0 chr4 11080283 11080326 -173208336 + (TG)n Simple_repeat Simple_repeat 2 44 0 2052 125 0 0 chr4 11080495 11080783 -173207879 + AluSg1 SINE Alu 1 288 -21 1640 250 77 30 chr4 11080865 11081569 -173207093 + L1MD2 LINE L1 5543 6228 -14 509 274 126 0 chr4 11081588 11081803 -173206859 - LTR33A LTR ERVL -22 501 260 1785 104 75 35 chr4 11081805 11082150 -173206512 - THE1B LTR MaLR 0 364 6 782 304 28 30 chr4 11083347 11083709 -173204953 + ERVL LTR ERVL 4873 5233 -531 194 214 0 0 chr4 11083939 11083981 -173204681 - L2 LINE L2 -1 3312 3271 873 225 149 0 chr4 11084266 11084595 -173204067 + MLT1D LTR MaLR 3 380 -125 395 321 35 12 chr4 11085047 11085210 -173203452 - MIR SINE MIR -55 153 38 878 266 61 30 chr4 11085812 11086285 -173202377 - MLT1D LTR MaLR -17 488 1 347 320 23 0 chr4 11086432 11086560 -173202102 + L1ME LINE L1 5522 5652 -469 201 121 0 0 chr4 11087886 11087919 -173200743 + (A)n Simple_repeat Simple_repeat 1 33 0 448 250 0 10 chr4 11088002 11088106 -173200556 - MIR3 SINE MIR -46 162 60 236 307 130 12 chr4 11088395 11088556 -173200106 - MIR SINE MIR -44 218 33 521 198 173 12 chr4 11088661 11088823 -173199839 - MLT1F LTR MaLR -42 500 313 300 277 8 59 chr4 11088827 11088946 -173199716 - MIR SINE MIR -117 145 33 267 291 119 15 chr4 11089082 11089216 -173199446 - MIR3 SINE MIR -51 157 10 194 371 62 21 chr4 11089349 11089543 -173199119 + MIR SINE MIR 8 209 -53 357 316 59 33 chr4 11090318 11090470 -173198192 - L1ME4a LINE L1 -2 6119 5964 2295 100 0 3 chr4 11091259 11091568 -173197094 - AluSc SINE Alu -1 308 1 1931 145 27 0 chr4 11091632 11091929 -173196733 - AluJo SINE Alu -7 305 1 329 172 31 0 chr4 11092799 11092863 -173195799 + MIR SINE MIR 82 147 -61 361 346 31 31 chr4 11093354 11093513 -173195149 + MIR SINE MIR 20 178 -84 243 271 19 37 chr4 11094503 11094610 -173194052 - LTR16C LTR ERVL -41 450 346 206 361 81 68 chr4 11095066 11095387 -173193275 - L2 LINE L2 0 3272 2948 190 297 25 59 chr4 11097006 11097124 -173191538 - L2 LINE L2 -13 3259 3146 591 280 101 49 chr4 11097287 11097712 -173190950 - MLT1L LTR MaLR -27 588 142 239 194 15 60 chr4 11097892 11097959 -173190703 + MIR SINE MIR 46 109 -153 1039 253 210 16 chr4 11097978 11098628 -173190034 - L2 LINE L2 -6 3307 2507 2246 107 3 0 chr4 11099758 11100067 -173188595 - AluSp SINE Alu -3 310 1 695 269 18 6 chr4 11100068 11100239 -173188423 - MIR SINE MIR -66 196 24 426 327 40 10 chr4 11100242 11100441 -173188221 - L1ME LINE L1 -383 5738 5534 2398 87 0 0 chr4 11100657 11100968 -173187694 - AluY SINE Alu 0 311 1 275 321 80 18 chr4 11102009 11102283 -173186379 + L1M4 LINE L1 4112 4402 -1744 1218 25 25 0 chr4 11102296 11102454 -173186208 + MLT2A1 LTR ERVL 1 162 -282 479 335 60 20 chr4 11102456 11102550 -173186112 + L1M4 LINE L1 4966 5055 -1091 2302 103 3 0 chr4 11102550 11102860 -173185802 + AluSx SINE Alu 1 311 -1 479 335 60 20 chr4 11102860 11103016 -173185646 + L1M4 LINE L1 5055 5226 -920 1256 241 117 57 chr4 11103090 11103129 -173185533 - MLT2B1 LTR ERVL -1 519 484 315 0 0 0 chr4 11103129 11103164 -173185498 + (TA)n Simple_repeat Simple_repeat 2 36 0 * 369 43 0 0 chr4 11103163 11103210 -173185452 + (CA)n Simple_repeat Simple_repeat 2 48 0 1256 241 117 57 chr4 11103164 11103659 -173185003 - MLT2B1 LTR ERVL -36 484 2 751 225 113 0 chr4 11103910 11104132 -173184530 - Tigger3(Golem) DNA MER2_type -15 3014 2768 287 353 79 0 chr4 11104248 11104387 -173184275 + MIR SINE MIR 58 207 -55 762 144 0 0 chr4 11104423 11104541 -173184121 - FLAM_A SINE Alu 0 142 25 248 340 131 34 chr4 11104661 11104929 -173183733 + L2 LINE L2 2978 3271 -1 360 272 144 6 chr4 11105835 11106015 -173182647 - MLT1D LTR MaLR 0 505 301 345 265 0 20 chr4 11106079 11106177 -173182485 - MLT1D LTR MaLR -309 196 101 340 246 24 0 chr4 11106915 11107041 -173181621 + CT-rich Low_complexity Low_complexity 4 132 0 2556 42 0 3 chr4 11107555 11107864 -173180798 - AluY SINE Alu -3 308 1 244 99 70 0 chr4 11107931 11108002 -173180660 + (TG)n Simple_repeat Simple_repeat 1 76 0 602 213 20 16 chr4 11108153 11108316 -173180346 - MLT1A1 LTR MaLR 0 396 205 1548 179 4 4 chr4 11108629 11108886 -173179776 - AluJo SINE Alu -55 257 1 269 208 13 52 chr4 11109055 11109110 -173179552 + MIR SINE MIR 70 123 -85 2153 104 20 0 chr4 11109110 11109407 -173179255 - AluSx SINE Alu -9 303 1 269 208 13 52 chr4 11109407 11109428 -173179234 + MIR SINE MIR 123 143 -65 2449 57 0 7 chr4 11110360 11110660 -173178002 - AluY SINE Alu -13 298 1 1960 129 7 0 chr4 11110892 11111203 -173177459 - AluSx SINE Alu 0 313 1 1970 219 65 10 chr4 11112646 11113125 -173175537 + MLT1D LTR MaLR 1 505 0 1341 273 155 0 chr4 11113333 11113817 -173174845 + MER89 LTR ERV1 1 559 0 304 306 124 35 chr4 11113839 11114185 -173174477 - LTR16C LTR ERVL 0 491 115 2070 219 104 2 chr4 11116060 11116608 -173172054 + L1MC2 LINE L1 5741 6344 0 2180 115 3 13 chr4 11116613 11116927 -173171735 + AluSx SINE Alu 1 311 -1 261 293 48 34 chr4 11117239 11117386 -173171276 + MIR3 SINE MIR 29 177 -31 207 279 16 0 chr4 11117612 11117673 -173170989 - L2 LINE L2 -44 3228 3167 2051 134 0 0 chr4 11118065 11118363 -173170299 - AluJb SINE Alu -14 298 1 195 271 34 17 chr4 11118923 11118982 -173169680 - L2 LINE L2 -217 3055 2996 1618 290 44 39 chr4 11120615 11121205 -173167457 + MLT1G1 LTR MaLR 1 593 -2 468 250 96 0 chr4 11122121 11122257 -173166405 - MIR SINE MIR -77 185 37 185 260 82 14 chr4 11123922 11123995 -173164667 + MIR SINE MIR 39 116 -92 2204 118 0 0 chr4 11124286 11124592 -173164070 - AluSg SINE Alu -2 308 3 201 39 0 0 chr4 11124699 11124725 -173163937 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 854 276 60 31 chr4 11125202 11125648 -173163014 + MLT1C LTR MaLR 4 462 -5 1255 251 20 20 chr4 11125657 11126015 -173162647 - MER47A DNA MER2_type -6 360 3 186 333 67 0 chr4 11126509 11126599 -173162063 - MIR SINE MIR -83 125 30 1495 237 84 3 chr4 11127304 11127650 -173161012 - MLT1A2 LTR MaLR 0 374 1 1158 104 50 50 chr4 11128403 11128605 -173160057 + AluJb SINE Alu 111 312 0 1027 244 52 0 chr4 11128660 11128930 -173159732 - Charlie1b DNA MER1_type -239 284 1 432 37 0 0 chr4 11129333 11129387 -173159275 + (TG)n Simple_repeat Simple_repeat 2 55 0 2361 88 0 0 chr4 11129639 11129936 -173158726 + AluSx SINE Alu 1 297 -15 294 328 74 28 chr4 11129938 11130180 -173158482 - MIR SINE MIR -3 259 1 299 310 106 0 chr4 11130435 11130548 -173158114 - MIR SINE MIR -116 146 22 461 266 113 62 chr4 11131381 11131656 -173157006 - L2 LINE L2 -87 3185 2897 191 324 14 28 chr4 11131717 11131788 -173156874 + L2 LINE L2 3223 3292 -21 787 163 0 0 chr4 11133456 11133579 -173155083 + FLAM_C SINE Alu 15 137 -6 241 330 20 20 chr4 11133914 11134027 -173154635 - MIR SINE MIR -85 123 12 6594 90 22 0 chr4 11134848 11135836 -173152826 - L1PA10 LINE L1 0 6168 5175 300 91 0 0 chr4 11135845 11135889 -173152773 + (TTCCC)n Simple_repeat Simple_repeat 1 44 0 3085 128 21 2 chr4 11135889 11135901 -173152761 - L1PA10 LINE L1 -941 5205 5195 2110 129 3 3 chr4 11135901 11136210 -173152452 - AluSq SINE Alu -4 309 1 3085 128 21 2 chr4 11136210 11136769 -173151893 - L1PA10 LINE L1 -951 5195 4623 3186 203 17 16 chr4 11136770 11137405 -173151257 - L1MB3 LINE L1 -2 6181 5546 248 313 24 36 chr4 11137502 11137668 -173150994 + L2 LINE L2 2823 2986 -286 1139 197 171 13 chr4 11137940 11138255 -173150407 - MLT1A1 LTR MaLR 0 365 1 1624 241 75 13 chr4 11138658 11139123 -173149539 - L1MB3 LINE L1 0 6183 5690 247 291 8 103 chr4 11139197 11139314 -173149348 - MIR SINE MIR -34 228 123 2001 189 19 3 chr4 11139411 11139770 -173148892 - MLT1A1 LTR MaLR 0 365 1 529 283 33 69 chr4 11139878 11140154 -173148508 - L1MC4 LINE L1 -369 7673 7408 246 357 179 17 chr4 11140215 11140562 -173148100 - L1MB3 LINE L1 -2109 5699 5297 832 251 164 13 chr4 11141810 11142209 -173146453 + MLT1C LTR MaLR 2 619 -7 439 314 73 5 chr4 11142241 11142432 -173146230 - MIR SINE MIR -12 250 47 315 251 96 36 chr4 11143704 11143871 -173144791 - MER112 DNA MER1_type -11 249 73 652 205 33 60 chr4 11143890 11144105 -173144557 + MLT1D LTR MaLR 1 209 -296 394 269 52 0 chr4 11144220 11144354 -173144308 + MLT1D LTR MaLR 279 419 -86 322 287 36 48 chr4 11144364 11144531 -173144131 + L2 LINE L2 2950 3114 -158 211 286 0 77 chr4 11145250 11145341 -173143321 + MIR3 SINE MIR 110 193 -15 485 256 8 0 chr4 11145629 11145746 -173142916 - MER3 DNA MER1_type -10 199 82 1218 227 30 15 chr4 11146132 11146467 -173142195 - MLT1A1 LTR MaLR -25 340 1 241 200 18 0 chr4 11146613 11146668 -173141994 - MER3 DNA MER1_type -55 154 99 812 258 82 25 chr4 11146799 11147164 -173141498 + MLT1C LTR MaLR 61 446 -21 216 293 65 32 chr4 11147821 11147944 -173140718 - MIR SINE MIR -62 146 20 423 216 18 117 chr4 11147972 11148040 -173140622 + MER20 DNA MER1_type 3 76 -143 1835 157 10 7 chr4 11148040 11148340 -173140322 - AluJo SINE Alu -11 301 1 423 216 18 117 chr4 11148340 11148442 -173140220 + MER20 DNA MER1_type 76 156 -63 274 276 0 23 chr4 11148629 11148716 -173139946 + G-rich Low_complexity Low_complexity 3 87 0 2979 255 60 6 chr4 11149771 11150871 -173137791 + L1MB8 LINE L1 5014 6171 -7 252 363 11 0 chr4 11151722 11151813 -173136849 + MIR SINE MIR 46 137 -125 2489 65 0 0 chr4 11152719 11153025 -173135637 - AluY SINE Alu -5 306 1 2380 94 0 0 chr4 11153035 11153343 -173135319 - AluSc SINE Alu -1 308 1 306 279 23 62 chr4 11153452 11153538 -173135124 + L2 LINE L2 3190 3271 -42 2372 144 22 0 chr4 11153538 11153893 -173134769 - THE1B LTR MaLR -1 363 1 306 279 23 62 chr4 11153893 11153935 -173134727 + L2 LINE L2 3271 3313 0 382 356 12 12 chr4 11154115 11154275 -173134387 + MIR3 SINE MIR 38 197 -11 1493 151 29 210 chr4 11154332 11154808 -173133854 + MLT1B LTR MaLR 1 390 0 210 353 86 0 chr4 11154869 11154985 -173133677 - MIR3 SINE MIR -77 131 6 192 282 186 16 chr4 11156505 11156629 -173132033 + MIR SINE MIR 20 164 -98 218 253 12 49 chr4 11157519 11157681 -173130981 + C-rich Low_complexity Low_complexity 4 159 0 224 294 54 87 chr4 11157958 11158142 -173130520 - MIR3 SINE MIR -24 184 7 342 303 64 0 chr4 11158856 11158965 -173129697 + L2 LINE L2 3156 3271 -1 437 259 95 19 chr4 11159315 11159473 -173129189 - MIR3 SINE MIR -27 181 12 275 267 70 12 chr4 11159552 11159638 -173129024 + MIR SINE MIR 83 173 -89 1864 159 21 0 chr4 11159852 11160142 -173128520 + AluJb SINE Alu 1 296 -16 2379 78 3 0 chr4 11161166 11161474 -173127188 + AluSg SINE Alu 1 309 -1 269 328 94 8 chr4 11162145 11162273 -173126389 - MIR SINE MIR -104 158 20 615 240 67 49 chr4 11163749 11163974 -173124688 - MLT1C LTR MaLR -233 234 6 863 157 167 0 chr4 11164722 11164926 -173123736 + MLT2C1 LTR ERVL 113 350 -47 769 188 22 3 chr4 11164972 11165755 -173122907 + (TCCA)n Simple_repeat Simple_repeat 1 798 0 417 307 17 82 chr4 11166168 11166399 -173122263 + L2 LINE L2 2951 3166 -106 312 316 127 17 chr4 11167733 11168082 -173120580 + MLT1K LTR MaLR 189 566 -22 2260 101 0 0 chr4 11169729 11170026 -173118636 - AluSx SINE Alu -15 297 1 246 254 0 39 chr4 11170487 11170584 -173118078 + GA-rich Low_complexity Low_complexity 1 143 0 253 316 22 15 chr4 11170659 11170795 -173117867 - MER105 DNA DNA -67 137 1 2303 65 7 3 chr4 11171605 11171898 -173116764 + AluY SINE Alu 1 294 -17 1863 114 0 4 chr4 11171907 11172170 -173116492 + AluY SINE Alu 42 303 -8 302 331 44 37 chr4 11172174 11172310 -173116352 + L1ME1 LINE L1 6028 6164 -2 220 372 58 17 chr4 11172338 11172510 -173116152 - MIR SINE MIR -38 224 46 307 326 54 0 chr4 11172754 11172883 -173115779 + MIR3 SINE MIR 13 148 -60 1831 103 0 8 chr4 11172887 11173139 -173115523 + AluSc SINE Alu 1 250 -59 291 214 0 0 chr4 11173139 11173195 -173115467 - MLT1C LTR MaLR -411 56 1 210 214 18 18 chr4 11174096 11174152 -173114510 + (TTCA)n Simple_repeat Simple_repeat 2 57 0 460 333 64 23 chr4 11174983 11175202 -173113460 - MIR SINE MIR -29 233 6 1040 264 65 9 chr4 11176306 11176643 -173112019 - MER70B LTR ERVL -202 376 21 247 288 38 0 chr4 11176997 11177077 -173111585 - MLT1L LTR MaLR -532 83 1 533 301 121 39 chr4 11177825 11177980 -173110682 + L1ME4a LINE L1 4019 4160 -1986 2896 88 5 0 chr4 11177980 11178353 -173110309 - THE1C LTR MaLR 0 375 1 533 301 121 39 chr4 11178353 11178552 -173110110 + L1ME4a LINE L1 4160 4402 -1744 363 354 80 64 chr4 11178882 11179420 -173109242 + L1ME4a LINE L1 4954 5506 -747 280 313 104 9 chr4 11179473 11179588 -173109074 - MIR SINE MIR -13 249 124 346 323 60 8 chr4 11180782 11180915 -173107747 + L1ME4a LINE L1 5978 6117 -4 3529 123 13 11 chr4 11181216 11181832 -173106830 + MER4D LTR ERV1 1 617 -255 4391 68 13 0 chr4 11181832 11182379 -173106283 + MER41A LTR ERV1 1 554 0 3875 112 16 26 chr4 11182551 11183175 -173105487 + MER41A-int LTR ERV1 1 618 -5328 * 11299 123 43 27 chr4 11183161 11183837 -173104825 + MER41A-int LTR ERV1 1079 1743 -4203 2294 98 0 3 chr4 11183837 11184144 -173104518 - AluY SINE Alu -5 306 1 11299 123 43 27 chr4 11184144 11184514 -173104148 + MER41A-int LTR ERV1 1743 2106 -3840 2395 73 0 10 chr4 11184514 11184828 -173103834 + AluY SINE Alu 1 311 0 11299 123 43 27 chr4 11184828 11186952 -173101710 + MER41A-int LTR ERV1 2106 5944 -2 4286 70 20 0 chr4 11186952 11187495 -173101167 + MER41A LTR ERV1 1 554 0 1273 163 53 0 chr4 11187495 11187741 -173100921 + MER4D LTR ERV1 645 903 0 250 376 58 0 chr4 11188879 11189068 -173099594 + MIR SINE MIR 49 248 -14 2166 107 0 10 chr4 11190570 11190868 -173097794 + AluSp SINE Alu 1 295 -18 1735 155 0 68 chr4 11191060 11191382 -173097280 + AluJb SINE Alu 1 300 -12 741 157 8 6 chr4 11192103 11192352 -173096310 - AluJb SINE Alu -14 298 1 199 274 164 0 chr4 11192765 11192838 -173095824 + MIR SINE MIR 53 137 -125 325 282 92 14 chr4 11193489 11193631 -173095031 - L2 LINE L2 -271 3001 2849 418 254 40 0 chr4 11195184 11195310 -173093352 - MER58B DNA MER1_type -7 334 204 1886 135 10 17 chr4 11195481 11195770 -173092892 - AluJo SINE Alu -23 289 3 292 279 54 8 chr4 11197794 11197923 -173090739 + MER106A DNA MER1_type 102 236 0 244 288 12 0 chr4 11197926 11198006 -173090656 + L2 LINE L2 2987 3067 -205 2634 188 9 11 chr4 11199030 11199573 -173089089 - L1PA16 LINE L1 -156 6010 5469 24 0 0 0 chr4 11199712 11199736 -173088926 + AT_rich Low_complexity Low_complexity 1 24 0 245 286 114 9 chr4 11201620 11201725 -173086937 + MIR SINE MIR 28 143 -119 943 173 0 0 chr4 11203163 11203313 -173085349 - AluJb SINE Alu -15 297 148 2093 132 0 0 chr4 11203560 11203863 -173084799 - AluY SINE Alu -8 303 1 243 307 97 29 chr4 11204615 11204801 -173083861 - MIR SINE MIR -30 232 33 259 288 159 18 chr4 11205058 11205227 -173083435 - MIR SINE MIR -38 224 34 2605 30 3 0 chr4 11206086 11206391 -173082271 + AluY SINE Alu 2 307 -4 350 235 65 53 chr4 11206701 11206871 -173081791 + MLT1D LTR MaLR 42 213 -292 193 273 61 0 chr4 11208460 11208526 -173080136 - MIR3 SINE MIR -54 154 85 360 179 0 95 chr4 11208591 11208770 -173079892 + (CACCT)n Simple_repeat Simple_repeat 2 163 0 2424 70 0 0 chr4 11209659 11209961 -173078701 + AluY SINE Alu 1 302 -9 668 313 25 0 chr4 11210534 11210735 -173077927 - MIR SINE MIR -19 243 38 228 291 64 36 chr4 11211663 11211773 -173076889 + L2 LINE L2 3173 3285 -28 2119 116 7 0 chr4 11213197 11213499 -173075163 + AluSx SINE Alu 1 304 -8 1275 162 4 26 chr4 11213500 11213729 -173074933 + AluJo SINE Alu 71 294 -18 188 352 56 40 chr4 11214119 11214244 -173074418 - L3 LINE CR1 -572 1005 879 651 26 0 0 chr4 11214373 11214450 -173074212 + (TATATG)n Simple_repeat Simple_repeat 1 77 0 847 265 56 8 chr4 11214969 11215203 -173073459 - MIR SINE MIR -3 259 15 1342 175 0 43 chr4 11215412 11215646 -173073016 - MER58A DNA MER1_type 0 224 1 468 51 0 0 chr4 11216137 11216196 -173072466 + (TG)n Simple_repeat Simple_repeat 2 60 0 1959 112 0 11 chr4 11216283 11216597 -173072065 - AluSx SINE Alu 0 311 1 763 107 80 0 chr4 11216674 11216786 -173071876 - 5S rRNA rRNA 0 121 1 435 328 75 0 chr4 11217258 11217444 -173071218 + MIR SINE MIR 50 249 -13 461 290 193 0 chr4 11218094 11218270 -173070392 + L2 LINE L2 3021 3230 -42 349 304 48 0 chr4 11218283 11218408 -173070254 + MIR SINE MIR 44 174 -88 549 272 0 0 chr4 11219393 11219935 -173068727 + (TG)n Simple_repeat Simple_repeat 1 542 0 602 259 23 29 chr4 11219973 11220147 -173068515 - MIR SINE MIR -29 233 61 495 294 43 27 chr4 11220228 11220412 -173068250 - MER5A DNA MER1_type 0 189 3 247 185 0 56 chr4 11220438 11220492 -173068170 + L2 LINE L2 3213 3263 -9 302 261 210 0 chr4 11221357 11221476 -173067186 + MIR3 SINE MIR 3 146 -62 997 260 7 11 chr4 11222420 11222697 -173065965 - L1MC3 LINE L1 0 7785 7510 1154 81 7 0 chr4 11222720 11222869 -173065793 - AluSg SINE Alu -160 150 1 1837 193 60 53 chr4 11222871 11223213 -173065449 - L1MC3 LINE L1 -1097 6688 6341 1978 122 7 0 chr4 11223213 11223499 -173065163 - AluJb SINE Alu -24 288 1 1837 193 60 53 chr4 11223499 11223643 -173065019 - L1MC3 LINE L1 -1444 6341 6199 233 116 23 0 chr4 11223650 11223693 -173064969 - L1MC3 LINE L1 -1543 6242 6199 723 171 46 129 chr4 11223699 11223828 -173064834 - L1MC3 LINE L1 -1542 6243 6146 2111 115 0 0 chr4 11223828 11224123 -173064539 + AluSq SINE Alu 5 299 -14 723 171 46 129 chr4 11224123 11224256 -173064406 - L1MC3 LINE L1 -1639 6146 6003 499 319 133 11 chr4 11224273 11224640 -173064022 - L1MC3 LINE L1 -1810 5998 5587 978 276 54 13 chr4 11225019 11225410 -173063252 + L1MC3 LINE L1 7379 7785 0 2325 97 0 0 chr4 11225432 11225732 -173062930 + AluSx SINE Alu 1 300 -12 393 236 52 52 chr4 11225748 11225922 -173062740 + L2 LINE L2 2938 3111 -161 1783 204 75 81 chr4 11225935 11226311 -173062351 - L1MC3 LINE L1 -380 7405 7033 2208 117 3 0 chr4 11226311 11226620 -173062042 - AluSg SINE Alu 0 310 1 1783 204 75 81 chr4 11226620 11226859 -173061803 - L1MC3 LINE L1 -752 7033 6794 2044 119 3 7 chr4 11229419 11229712 -173058950 - AluJo SINE Alu -20 292 1 202 290 130 40 chr4 11230441 11230541 -173058121 - MER5B DNA MER1_type -5 173 65 180 278 19 0 chr4 11230617 11230671 -173057991 - MIR SINE MIR -65 143 89 2029 99 3 20 chr4 11230729 11231049 -173057613 - AluSx SINE Alu 0 315 1 223 182 36 36 chr4 11231102 11231157 -173057505 + MIR SINE MIR 85 139 -69 2095 110 0 0 chr4 11231201 11231545 -173057117 - AluSg SINE Alu 0 344 1 376 272 93 12 chr4 11231761 11231923 -173056739 + MER58A DNA MER1_type 42 216 -8 282 305 70 25 chr4 11232205 11232405 -173056257 + L2 LINE L2 2957 3165 -107 266 274 17 60 chr4 11233690 11233807 -173054855 + MIR SINE MIR 13 124 -138 386 286 110 0 chr4 11233985 11234139 -173054523 - MIR3 SINE MIR -22 186 16 236 258 134 0 chr4 11234556 11234653 -173054009 - MIR SINE MIR -63 145 36 870 268 67 42 chr4 11235743 11236146 -173052516 + MLT1C LTR MaLR 53 465 -2 802 191 64 25 chr4 11236717 11236921 -173051741 + MER20 DNA MER1_type 6 217 -2 300 301 78 2 chr4 11236932 11237068 -173051594 + MIR SINE MIR 31 143 -65 261 250 0 0 chr4 11237636 11237712 -173050950 + (TG)n Simple_repeat Simple_repeat 1 76 0 255 326 101 0 chr4 11239076 11239214 -173049448 + MIR SINE MIR 33 184 -78 605 258 154 41 chr4 11239454 11239799 -173048863 - MLT1C LTR MaLR -66 401 18 242 323 202 0 chr4 11239969 11240093 -173048569 - MIR SINE MIR -6 256 108 183 311 33 0 chr4 11240498 11240559 -173048103 - L2 LINE L2 -2 3270 3208 240 86 0 0 chr4 11242020 11242055 -173046607 + (TG)n Simple_repeat Simple_repeat 1 35 0 225 275 100 0 chr4 11242067 11242147 -173046515 + MIR SINE MIR 90 177 -85 203 193 0 57 chr4 11244132 11244220 -173044442 + CT-rich Low_complexity Low_complexity 2 84 0 219 295 67 0 chr4 11244483 11244588 -173044074 - MIR SINE MIR -62 146 35 188 308 0 0 chr4 11244810 11244862 -173043800 + L2 LINE L2 3221 3272 0 2411 256 152 31 chr4 11245475 11245576 -173043086 - L1MC4 LINE L1 -13 8029 7942 354 80 0 0 chr4 11245576 11245626 -173043036 + (TG)n Simple_repeat Simple_repeat 1 50 0 2411 256 152 31 chr4 11245626 11246637 -173042025 - L1MC4 LINE L1 -100 7942 6783 1789 213 58 11 chr4 11246637 11247070 -173041592 - LTR32 LTR ERVL 0 471 19 2127 96 51 0 chr4 11247116 11247408 -173041254 - AluSx SINE Alu -5 307 1 193 333 31 21 chr4 11247414 11247510 -173041152 - L2 LINE L2 -15 3257 3161 903 242 62 10 chr4 11247888 11248309 -173040353 + MLT1D LTR MaLR 14 486 -19 189 235 29 137 chr4 11248657 11248759 -173039903 + MER5A DNA MER1_type 1 91 -98 2080 74 88 0 chr4 11249245 11249528 -173039134 + AluSx SINE Alu 1 308 -4 291 153 27 54 chr4 11249753 11249864 -173038798 + CT-rich Low_complexity Low_complexity 1 108 0 311 219 31 25 chr4 11249920 11250080 -173038582 + CT-rich Low_complexity Low_complexity 1 161 0 499 283 11 33 chr4 11250110 11250290 -173038372 + C-rich Low_complexity Low_complexity 4 179 0 312 370 25 6 chr4 11252066 11252228 -173036434 + MIR SINE MIR 86 250 -12 318 304 45 9 chr4 11252280 11252342 -173036320 + MIR SINE MIR 48 117 -145 1467 207 51 10 chr4 11252342 11252637 -173036025 + AluJo SINE Alu 1 307 -5 318 304 45 9 chr4 11252637 11252686 -173035976 + MIR SINE MIR 117 163 -99 2051 125 0 13 chr4 11253396 11253699 -173034963 - AluSx SINE Alu -1 311 13 328 336 27 0 chr4 11254543 11254653 -173034009 - MIR SINE MIR -111 151 39 226 298 34 73 chr4 11255388 11255566 -173033096 - MIR3 SINE MIR -30 178 8 262 354 34 0 chr4 11256003 11256135 -173032527 + MIR SINE MIR 45 182 -63 497 305 28 7 chr4 11256530 11256671 -173031991 - MIR3 SINE MIR -46 162 19 243 88 0 0 chr4 11256842 11256876 -173031786 + (TG)n Simple_repeat Simple_repeat 2 35 0 542 105 13 0 chr4 11257182 11257258 -173031404 + MADE1 DNA Mariner 1 77 -3 184 231 0 19 chr4 11257828 11257880 -173030782 + MIR SINE MIR 104 154 -108 1340 250 120 19 chr4 11258499 11258923 -173029739 - MLT1C LTR MaLR 0 467 1 1708 218 114 2 chr4 11260178 11260702 -173027960 - L1MD3 LINE L1 0 8040 7472 2215 107 3 3 chr4 11261089 11261398 -173027264 - AluSx SINE Alu -1 311 3 186 43 0 0 chr4 11261403 11261426 -173027236 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2081 116 0 7 chr4 11262361 11262663 -173025999 - AluSx SINE Alu -11 301 2 398 335 0 28 chr4 11262666 11262848 -173025814 + (CATA)n Simple_repeat Simple_repeat 3 179 0 * 425 339 0 32 chr4 11262753 11262939 -173025723 + (CA)n Simple_repeat Simple_repeat 1 180 0 193 302 105 12 chr4 11263320 11263406 -173025256 - MIR SINE MIR -56 206 113 460 207 36 9 chr4 11267564 11267675 -173020987 - MER81 DNA DNA 0 114 1 196 202 17 34 chr4 11268128 11268247 -173020415 + (TGAG)n Simple_repeat Simple_repeat 4 120 0 2047 260 13 74 chr4 11268850 11269033 -173019629 - L1 LINE L1 -2705 3441 3248 831 135 8 8 chr4 11269033 11269166 -173019496 - FLAM_C SINE Alu 0 133 1 2047 260 13 74 chr4 11269166 11269514 -173019148 - L1 LINE L1 -2898 3248 2982 2016 110 10 7 chr4 11269514 11269805 -173018857 - AluJb SINE Alu -12 300 9 2047 260 13 74 chr4 11269805 11270150 -173018512 - L1 LINE L1 -3164 2982 2617 201 180 20 20 chr4 11270903 11270953 -173017709 + G-rich Low_complexity Low_complexity 6 55 0 655 253 39 28 chr4 11271582 11271764 -173016898 + MER5A DNA MER1_type 6 189 0 861 133 27 12 chr4 11272328 11272591 -173016071 + (TCCA)n Simple_repeat Simple_repeat 1 267 0 903 154 26 5 chr4 11272615 11273194 -173015468 + (TCCA)n Simple_repeat Simple_repeat 1 591 0 903 169 0 0 chr4 11273210 11273382 -173015280 + (TCCA)n Simple_repeat Simple_repeat 4 175 0 452 259 24 0 chr4 11274512 11274643 -173014019 - MIR3 SINE MIR -52 156 45 236 263 0 0 chr4 11276671 11276728 -173011934 - L2 LINE L2 -217 3055 2999 375 244 0 0 chr4 11277980 11278111 -173010551 + (CA)n Simple_repeat Simple_repeat 2 132 0 432 267 0 0 chr4 11278162 11278342 -173010320 + (CA)n Simple_repeat Simple_repeat 1 180 0 218 243 37 37 chr4 11278395 11278502 -173010160 + L2 LINE L2 3004 3110 -162 377 275 9 18 chr4 11280084 11280193 -173008469 - MIR SINE MIR -74 188 81 739 237 16 5 chr4 11280707 11280897 -173007765 - L1MB5 LINE L1 -2 6172 5981 256 307 58 22 chr4 11281484 11281621 -173007041 + MIR3 SINE MIR 4 145 -63 4663 87 12 23 chr4 11281748 11282254 -173006408 + MER41B LTR ERV1 1 500 -135 2083 109 3 7 chr4 11282254 11282556 -173006106 - AluSx SINE Alu -11 301 1 4663 87 12 23 chr4 11282556 11282691 -173005971 + MER41B LTR ERV1 500 635 0 198 323 141 0 chr4 11282691 11282790 -173005872 + MIR SINE MIR 97 209 -53 199 139 0 0 chr4 11283256 11283292 -173005370 - MIR SINE MIR -92 116 81 249 244 24 61 chr4 11283389 11283471 -173005191 - MIR3 SINE MIR -40 168 90 376 370 0 0 chr4 11283660 11283787 -173004875 + L3 LINE CR1 1337 1463 -114 307 283 49 136 chr4 11284042 11284226 -173004436 + MIR SINE MIR 51 218 -44 1143 286 54 52 chr4 11284332 11284929 -173003733 + MLT1E1 LTR MaLR 57 654 0 501 230 37 47 chr4 11285525 11285716 -173002946 + MER51C LTR ERV1 452 640 0 275 321 80 18 chr4 11286901 11287175 -173001487 + L1M4 LINE L1 4112 4402 -1744 1218 25 25 0 chr4 11287188 11287346 -173001316 + MLT2A1 LTR ERVL 1 162 -282 409 322 48 40 chr4 11287348 11287442 -173001220 + L1M4 LINE L1 4966 5058 -1088 2363 85 3 0 chr4 11287442 11287749 -173000913 + AluSx SINE Alu 1 308 -4 409 322 48 40 chr4 11287749 11287881 -173000781 + L1M4 LINE L1 5058 5194 -952 1256 241 117 57 chr4 11287960 11287999 -173000663 - MLT2B1 LTR ERVL -1 519 484 369 0 0 0 chr4 11287999 11288040 -173000622 + (TA)n Simple_repeat Simple_repeat 1 41 0 * 462 18 0 0 chr4 11288039 11288094 -173000568 + (CA)n Simple_repeat Simple_repeat 2 56 0 1256 241 117 57 chr4 11288040 11288543 -173000119 - MLT2B1 LTR ERVL -36 484 2 751 225 113 0 chr4 11288794 11289016 -172999646 - Tigger3(Golem) DNA MER2_type -15 3014 2768 287 353 79 0 chr4 11289132 11289271 -172999391 + MIR SINE MIR 58 207 -55 757 145 0 0 chr4 11289307 11289424 -172999238 - FLAM_A SINE Alu -1 141 25 248 340 131 34 chr4 11289544 11289812 -172998850 + L2 LINE L2 2978 3271 -1 360 272 144 6 chr4 11290718 11290898 -172997764 - MLT1D LTR MaLR 0 505 301 345 265 0 20 chr4 11290962 11291060 -172997602 - MLT1D LTR MaLR -309 196 101 340 246 24 0 chr4 11291798 11291924 -172996738 + CT-rich Low_complexity Low_complexity 4 132 0 1232 118 5 0 chr4 11292438 11292624 -172996038 - AluY SINE Alu -2 309 123 440 202 81 0 chr4 11292877 11292976 -172995686 + MIR SINE MIR 76 182 -80 2113 142 34 31 chr4 11292985 11293430 -172995232 + LTR32 LTR ERVL 13 458 -13 518 283 19 13 chr4 11293822 11293981 -172994681 - MER63A DNA MER1_type -41 169 10 247 237 7 66 chr4 11294094 11294174 -172994488 + MIR3 SINE MIR 93 170 -38 281 297 21 25 chr4 11294281 11294476 -172994186 + L1ME LINE L1 5508 5702 -462 593 314 49 5 chr4 11295038 11295271 -172993391 - MIR SINE MIR -18 244 4 255 157 20 0 chr4 11295372 11295423 -172993239 + L2 LINE L2 3262 3313 0 694 277 163 3 chr4 11295804 11296104 -172992558 + LTR16C LTR ERVL 139 486 -5 302 279 0 0 chr4 11296256 11296324 -172992338 - L2 LINE L2 -208 3064 2997 264 238 69 10 chr4 11296856 11296957 -172991705 - L1ME4a LINE L1 -48 6073 5967 438 238 100 38 chr4 11296988 11297148 -172991514 - L1M4 LINE L1 -1511 4635 4466 446 319 102 12 chr4 11297161 11297420 -172991242 - L1ME4a LINE L1 -202 5919 5632 2532 53 0 0 chr4 11297550 11297852 -172990810 + AluY SINE Alu 1 302 -9 520 255 28 0 chr4 11298091 11298232 -172990430 - L1ME3A LINE L1 -5 6165 6021 1086 202 43 0 chr4 11298247 11298455 -172990207 + MER20 DNA MER1_type 1 217 -2 277 171 158 0 chr4 11299440 11299516 -172989146 - MER96 DNA MER1_type? -86 89 2 356 358 28 17 chr4 11299721 11299897 -172988765 + MIR SINE MIR 6 183 -79 312 287 7 44 chr4 11301734 11301870 -172986792 + MLT1K LTR MaLR 454 584 -4 524 249 57 36 chr4 11302028 11302221 -172986441 + ORSL DNA AcHobo 13 209 -66 1761 196 28 11 chr4 11302307 11302664 -172985998 + MLT1A1 LTR MaLR 3 365 0 300 289 221 29 chr4 11303680 11303888 -172984774 - MIR SINE MIR 0 262 15 286 216 70 12 chr4 11304295 11304407 -172984255 - LTR45 LTR ERV1 -13 609 390 445 287 33 0 chr4 11304532 11304654 -172984008 - MER72 LTR ERV1 -264 458 333 219 270 153 9 chr4 11304807 11304918 -172983744 - MIR SINE MIR -45 217 91 657 229 120 36 chr4 11305419 11305611 -172983051 + MER63A DNA MER1_type 3 210 0 820 241 3 71 chr4 11306130 11306412 -172982250 + HAL1 LINE L1 1465 1727 -780 547 251 87 0 chr4 11306414 11306499 -172982163 + HAL1 LINE L1 1926 2002 -505 231 36 0 0 chr4 11306499 11306527 -172982135 + (CA)n Simple_repeat Simple_repeat 1 28 0 547 251 87 0 chr4 11306527 11306636 -172982026 + HAL1 LINE L1 2002 2137 -370 2412 176 63 10 chr4 11306645 11307156 -172981506 - MER54A LTR ERVL 0 901 147 463 256 13 13 chr4 11307226 11307382 -172981280 + HAL1 LINE L1 2193 2348 -159 1192 132 29 23 chr4 11307386 11307723 -172980939 + Tigger1 DNA MER2_type 26 2417 -1 250 296 15 76 chr4 11307751 11307883 -172980779 + HAL1 LINE L1 2368 2491 -16 2619 29 3 0 chr4 11307883 11308191 -172980471 - AluY SINE Alu -2 309 1 4715 147 87 6 chr4 11308218 11309161 -172979501 - L1MA5 LINE L1 -5 6295 5286 5505 165 44 36 chr4 11309237 11310311 -172978351 - L1MA5 LINE L1 -816 5330 4243 2156 105 3 0 chr4 11310311 11310607 -172978055 - AluSq SINE Alu -16 297 1 5505 165 44 36 chr4 11310607 11310792 -172977870 - L1MA5 LINE L1 -1903 4243 4061 2030 106 10 22 chr4 11311475 11311786 -172976876 - AluSx SINE Alu 0 312 6 247 163 0 0 chr4 11311967 11312010 -172976652 - Alu SINE Alu -265 43 1 602 156 93 70 chr4 11312025 11312252 -172976410 - LTR18B LTR ERVL -146 468 149 1222 121 0 0 chr4 11312267 11312862 -172975800 + ALR/Alpha Satellite centromeric 1 595 -51 284 265 84 12 chr4 11312870 11312953 -172975709 + L2 LINE L2 3183 3271 -42 284 301 32 0 chr4 11314300 11314393 -172974269 - MIR SINE MIR -72 190 95 219 282 56 14 chr4 11315189 11315260 -172973402 - MIR3 SINE MIR -54 154 81 540 323 42 21 chr4 11315618 11315906 -172972756 + L1ME LINE L1 5300 5593 -577 275 304 49 29 chr4 11316424 11316526 -172972136 + MIR3 SINE MIR 78 181 -27 247 265 0 0 chr4 11316686 11316735 -172971927 + L2 LINE L2 3221 3269 -3 24 0 0 0 chr4 11317187 11317211 -172971451 + GC_rich Low_complexity Low_complexity 1 24 0 318 67 0 0 chr4 11317580 11317625 -172971037 + (TTAGGG)n Simple_repeat Simple_repeat 6 50 0 267 248 0 0 chr4 11318155 11318243 -172970419 + MIR SINE MIR 63 146 -62 286 270 46 0 chr4 11318592 11318721 -172969941 + MIR SINE MIR 13 148 -60 2025 102 0 11 chr4 11318725 11319061 -172969601 + AluSx SINE Alu 1 333 0 1525 162 30 4 chr4 11319118 11319383 -172969279 - MLT1B LTR MaLR -2 388 117 5050 168 53 20 chr4 11319484 11320449 -172968213 + Tigger2 DNA MER2_type 155 1151 -1567 822 99 7 119 chr4 11320449 11320600 -172968062 + AluJo SINE Alu 2 135 -177 1832 120 101 0 chr4 11320605 11320913 -172967749 + Tigger2 DNA MER2_type 1134 1472 -1246 863 107 15 0 chr4 11321774 11321905 -172966757 - AluJb SINE Alu -179 133 1 2143 111 3 3 chr4 11322502 11322808 -172965854 - AluSq SINE Alu -7 306 1 637 203 11 0 chr4 11324594 11324771 -172963891 + (TGGG)n Simple_repeat Simple_repeat 1 179 0 533 354 16 0 chr4 11324871 11325063 -172963599 - MIR SINE MIR -60 202 8 2087 133 0 3 chr4 11325737 11326046 -172962616 + AluSx SINE Alu 1 308 -4 1984 116 0 17 chr4 11327221 11327514 -172961148 + AluSx SINE Alu 1 288 -24 446 355 90 30 chr4 11327516 11327820 -172960842 - HAL1 LINE L1 -914 1593 1266 1827 151 20 0 chr4 11327820 11328118 -172960544 - AluJo SINE Alu -8 304 1 446 355 90 30 chr4 11328118 11328145 -172960517 - HAL1 LINE L1 -1241 1266 1242 880 161 0 0 chr4 11329203 11329333 -172959329 + FLAM_C SINE Alu 2 131 -2 2086 101 0 14 chr4 11329349 11329670 -172958992 + AluSx SINE Alu 1 317 0 3564 125 21 21 chr4 11330143 11330670 -172957992 - MER1A DNA MER1_type 0 527 1 1497 144 0 4 chr4 11330958 11331201 -172957461 - AluSx SINE Alu -70 242 1 1389 87 0 0 chr4 11331204 11331387 -172957275 + L1MA2 LINE L1 6122 6304 0 762 203 6 37 chr4 11331444 11331607 -172957055 + MER20 DNA MER1_type 62 219 0 724 216 0 0 chr4 11331659 11331793 -172956869 - AluJo SINE Alu -176 136 3 810 250 103 14 chr4 11331864 11332161 -172956501 + L2 LINE L2 2758 3074 -239 290 232 64 56 chr4 11332743 11332868 -172955794 - L2 LINE L2 -2 3311 3186 1621 152 43 0 chr4 11333378 11333679 -172954983 - AluSx SINE Alu 0 312 1 228 240 40 0 chr4 11334036 11334111 -172954551 + MIR SINE MIR 76 153 -109 353 264 64 29 chr4 11335579 11335719 -172952943 - L2 LINE L2 -2 3311 3167 721 127 13 89 chr4 11336448 11336605 -172952057 - AluSg/x SINE Alu 0 312 168 1653 172 0 14 chr4 11336713 11337004 -172951658 + AluJb SINE Alu 1 287 -25 368 189 0 54 chr4 11337004 11337078 -172951584 + Tigger2 DNA MER2_type 2639 2708 -10 505 249 30 77 chr4 11337084 11337253 -172951409 - MIR SINE MIR 0 262 102 291 227 159 0 chr4 11337529 11337617 -172951045 - L2 LINE L2 -7 3306 3205 271 194 206 69 chr4 11338140 11338300 -172950362 - L1MC5 LINE L1 -48 7913 7732 1720 116 60 21 chr4 11338362 11338647 -172950015 - AluSx SINE Alu -16 296 1 1610 171 17 10 chr4 11338651 11338944 -172949718 - AluJb SINE Alu -17 295 1 2190 81 3 3 chr4 11339925 11340220 -172948442 + AluSp SINE Alu 1 295 -18 2204 92 0 0 chr4 11340221 11340534 -172948128 + AluSc SINE Alu 1 313 0 279 145 48 0 chr4 11341415 11341477 -172947185 - L1MCc LINE L1 -6174 249 185 367 226 2 0 chr4 11341931 11342014 -172946648 + MER33 DNA MER1_type 1 73 -97 * 506 218 78 0 chr4 11342012 11342154 -172946508 + MER33 DNA MER1_type 211 363 0 860 286 92 45 chr4 11347150 11347399 -172941263 + MLT1C LTR MaLR 2 283 -184 8387 52 12 4 chr4 11347399 11348398 -172940264 - LTR13 LTR ERVK 0 1007 1 860 286 92 45 chr4 11348398 11348592 -172940070 + MLT1C LTR MaLR 283 466 -1 246 263 95 0 chr4 11348868 11348963 -172939699 + MER20 DNA MER1_type 26 129 -90 207 100 0 0 chr4 11349257 11349287 -172939375 + (A)n Simple_repeat Simple_repeat 1 30 0 678 211 157 12 chr4 11349642 11349808 -172938854 + MER21B LTR ERV1 1 190 -673 * 920 206 76 76 chr4 11349803 11350079 -172938583 + MER21B LTR ERV1 581 856 -7 248 250 0 0 chr4 11350148 11350220 -172938442 + L1M4 LINE L1 5106 5177 -969 511 239 71 13 chr4 11351033 11351188 -172937474 - MER20 DNA MER1_type -53 166 3 279 354 42 14 chr4 11352747 11352891 -172935771 + L2 LINE L2 3125 3272 0 870 166 0 0 chr4 11353385 11353560 -172935102 + (TGGA)n Simple_repeat Simple_repeat 4 178 0 29 0 0 0 chr4 11356391 11356420 -172932242 + AT_rich Low_complexity Low_complexity 1 29 0 30 45 0 0 chr4 11356592 11356636 -172932026 + AT_rich Low_complexity Low_complexity 1 44 0 383 281 79 17 chr4 11358421 11358599 -172930063 - MIR SINE MIR -54 208 20 1883 231 70 30 chr4 11358605 11359279 -172929383 + L1M4 LINE L1 3066 3766 -2380 1303 105 0 42 chr4 11359279 11359469 -172929193 + AluSg/x SINE Alu 122 303 -9 1555 168 14 119 chr4 11359470 11359576 -172929086 + L1M4 LINE L1 5279 5395 -783 2112 119 33 0 chr4 11359576 11359879 -172928783 + AluSq SINE Alu 1 313 0 1555 168 14 119 chr4 11359879 11360007 -172928655 + L1M4 LINE L1 5395 5535 -643 701 184 0 16 chr4 11360007 11360132 -172928530 + FLAM_A SINE Alu 1 123 -10 1555 168 14 119 chr4 11360132 11360143 -172928519 + L1M4 LINE L1 5535 5546 -632 2329 107 7 7 chr4 11360143 11360453 -172928209 + AluSg SINE Alu 1 310 0 1555 168 14 119 chr4 11360453 11360651 -172928011 + L1M4 LINE L1 5546 5677 -501 335 278 136 26 chr4 11360975 11361166 -172927496 - MIR SINE MIR -1 261 50 358 319 0 0 chr4 11361222 11361313 -172927349 + MIR SINE MIR 2 92 -170 5221 94 31 9 chr4 11361354 11362117 -172926545 + LTR17 LTR ERV1 1 780 0 5179 72 13 21 chr4 11362134 11362833 -172925829 + HERV17 LTR ERV1 17 709 -7917 1352 117 46 11 chr4 11363103 11363384 -172925278 + HERV17 LTR ERV1 929 1219 -5677 919 67 0 22 chr4 11363390 11363524 -172925138 + HERV17 LTR ERV1 3008 3138 -5488 10900 58 14 3 chr4 11363761 11365148 -172923514 + HERV17 LTR ERV1 3185 4587 -4039 18809 52 8 2 chr4 11365249 11367616 -172921046 + HERV17 LTR ERV1 4767 7147 -1479 279 77 0 0 chr4 11367612 11367651 -172921011 + HERV17 LTR ERV1 7510 7548 -1078 * 2398 38 3 0 chr4 11367641 11367932 -172920730 + HERV17 LTR ERV1 8335 8626 0 4917 108 11 16 chr4 11367932 11368676 -172919986 + LTR17 LTR ERV1 1 740 -40 822 88 0 0 chr4 11369711 11369813 -172918849 + FLAM_C SINE Alu 9 110 -33 650 295 43 9 chr4 11369850 11370060 -172918602 + LTR16C LTR ERVL 275 491 0 4546 30 2 2 chr4 11370091 11370649 -172918013 - LTR6B LTR ERV1 0 558 1 716 153 8 0 chr4 11370724 11370842 -172917820 + FLAM_A SINE Alu 19 137 -5 183 333 0 25 chr4 11370906 11370987 -172917675 - L2 LINE L2 -932 2382 2304 2383 110 0 0 chr4 11371484 11371785 -172916877 + AluSq SINE Alu 1 301 -12 180 331 100 15 chr4 11372401 11372531 -172916131 - L2 LINE L2 -834 2480 2340 2512 62 0 0 chr4 11373151 11373443 -172915219 - AluY SINE Alu -19 292 1 21 0 0 0 chr4 11373445 11373466 -172915196 + AT_rich Low_complexity Low_complexity 1 21 0 775 164 56 80 chr4 11373747 11373960 -172914702 - MER3 DNA MER1_type 0 209 2 702 251 58 67 chr4 11374159 11374459 -172914203 + MLT1C LTR MaLR 102 390 0 1750 223 43 5 chr4 11374876 11374959 -172913703 + LTR2 LTR ERV1 41 119 -330 207 0 0 0 chr4 11374959 11374982 -172913680 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1750 223 43 5 chr4 11374982 11375292 -172913370 + LTR2 LTR ERV1 119 449 0 3694 154 46 62 chr4 11375292 11376120 -172912542 + Harlequin LTR ERV1 1 840 -6973 2456 77 0 19 chr4 11376120 11376430 -172912232 + AluY SINE Alu 2 305 -6 3694 154 46 62 chr4 11376430 11377421 -172911241 + Harlequin LTR ERV1 840 4331 -3482 1133 230 0 0 chr4 11377421 11377621 -172911041 + Harlequin LTR ERV1 1721 1920 -6506 2283 78 0 30 chr4 11377622 11377918 -172910744 + AluY SINE Alu 11 297 -14 343 247 40 51 chr4 11377938 11378061 -172910601 - L1MC4 LINE L1 -1334 6708 6608 569 239 146 0 chr4 11378061 11378191 -172910471 + Harlequin LTR ERV1 1937 2085 -6341 1940 244 13 2 chr4 11378437 11378834 -172909828 + Harlequin LTR ERV1 2069 2469 -5957 574 248 35 21 chr4 11378814 11378959 -172909703 + Harlequin LTR ERV1 3678 3824 -4602 * 6444 190 21 7 chr4 11378949 11380081 -172908581 + Harlequin LTR ERV1 5148 6295 -2131 1406 216 43 25 chr4 11380155 11380660 -172908002 + Harlequin LTR ERV1 7012 7604 -209 500 204 18 9 chr4 11380640 11380753 -172907909 + Harlequin LTR ERV1 6782 6895 -1 * 1702 199 44 49 chr4 11380826 11381237 -172907425 + LTR2 LTR ERV1 41 449 0 3431 123 11 22 chr4 11382639 11383193 -172905469 - LTR14 LTR ERVK 0 548 1 2397 231 57 19 chr4 11383367 11383963 -172904699 - MLT1E2 LTR MaLR -7 619 1 997 225 22 13 chr4 11384347 11384574 -172904088 + MIR SINE MIR 34 262 0 1345 128 0 5 chr4 11384663 11384850 -172903812 + AluSq SINE Alu 77 262 -51 210 282 168 30 chr4 11385021 11385152 -172903510 + MIR SINE MIR 44 141 -67 286 238 48 0 chr4 11385179 11385263 -172903399 - L1M4 LINE L1 -1416 4730 4643 2313 102 7 0 chr4 11385279 11385583 -172903079 - AluY SINE Alu -5 306 1 1297 164 18 13 chr4 11385716 11385941 -172902721 + AluJb SINE Alu 42 267 -45 1727 208 60 11 chr4 11385941 11386461 -172902201 + L1M4 LINE L1 4813 5357 -789 701 162 0 11 chr4 11386664 11386843 -172901819 + (CGTG)n Simple_repeat Simple_repeat 3 179 0 210 302 21 0 chr4 11386873 11386969 -172901693 + (CGGAG)n Simple_repeat Simple_repeat 5 102 0 229 206 22 0 chr4 11386993 11387085 -172901577 + (CGGAG)n Simple_repeat Simple_repeat 5 98 0 2925 141 59 36 chr4 11387861 11388519 -172900143 + MER4C-int LTR ERV1 793 1465 -6655 1706 150 4 4 chr4 11388520 11388786 -172899876 + AluSx SINE Alu 1 266 -46 410 121 0 0 chr4 11388900 11388958 -172899704 - AluJ/FLAM SINE Alu -244 58 1 4419 167 50 88 chr4 11388976 11389340 -172899322 + MER4C-int LTR ERV1 3798 4174 -3946 333 0 0 0 chr4 11389340 11389377 -172899285 + (TAA)n Simple_repeat Simple_repeat 1 37 0 4419 167 50 88 chr4 11389377 11389459 -172899203 + MER4C-int LTR ERV1 4174 4258 -3862 2272 69 54 0 chr4 11389459 11389736 -172898926 + AluY SINE Alu 1 292 -19 4419 167 50 88 chr4 11389736 11389889 -172898773 + MER4C-int LTR ERV1 4258 4415 -3705 207 0 0 0 chr4 11389889 11389912 -172898750 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4419 167 50 88 chr4 11389912 11390518 -172898144 + MER4C-int LTR ERV1 4415 4959 -3161 523 148 230 8 chr4 11390672 11390799 -172897863 + MER4C LTR ERV1 300 655 -9 845 148 34 7 chr4 11390811 11390960 -172897702 + MER4E LTR ERV1 627 779 0 1868 159 37 88 chr4 11390962 11391112 -172897550 + MER4C-int LTR ERV1 3502 3658 -2940 2207 110 10 16 chr4 11391112 11391422 -172897240 - AluSc SINE Alu -1 308 1 1868 159 37 88 chr4 11391422 11391689 -172896973 + MER4C-int LTR ERV1 3658 3889 -2709 1827 160 0 0 chr4 11391689 11391957 -172896705 - AluJb SINE Alu -44 268 1 1868 159 37 88 chr4 11391957 11392073 -172896589 + MER4C-int LTR ERV1 3889 4009 -2589 6639 155 57 58 chr4 11392227 11392499 -172896163 + MER4C-int LTR ERV1 4990 5261 -1337 2161 120 10 7 chr4 11392499 11392791 -172895871 - AluSg SINE Alu -17 293 1 1737 153 30 33 chr4 11392801 11393102 -172895560 - AluSx SINE Alu -12 300 1 6639 155 57 58 chr4 11393102 11394415 -172894247 + MER4C-int LTR ERV1 5270 6584 -14 2276 139 93 14 chr4 11394440 11394870 -172893792 + MER4C LTR ERV1 2 465 0 237 244 0 0 chr4 11394885 11394971 -172893691 + (ATGGTG)n Simple_repeat Simple_repeat 5 90 0 390 330 40 44 chr4 11394997 11395041 -172893621 - MIR SINE MIR -11 251 208 2436 96 0 0 chr4 11395041 11395344 -172893318 - AluSg SINE Alu -7 303 1 390 330 40 44 chr4 11395344 11395526 -172893136 - MIR SINE MIR -54 208 26 534 311 48 0 chr4 11395969 11396136 -172892526 - MER63A DNA MER1_type -35 175 1 319 276 112 8 chr4 11396669 11396803 -172891859 + L2 LINE L2 3166 3313 0 838 235 84 104 chr4 11396844 11397248 -172891414 - MLT2C1 LTR ERVL -1 396 1 234 237 216 10 chr4 11397758 11397855 -172890807 + MIR SINE MIR 31 147 -61 190 107 0 0 chr4 11398999 11399027 -172889635 - MIR SINE MIR -118 144 117 2143 112 14 0 chr4 11399482 11399777 -172888885 + AluSq SINE Alu 1 299 -14 1500 153 76 138 chr4 11400819 11400937 -172887725 - Tigger2a DNA MER2_type -2274 434 310 2245 132 0 0 chr4 11400937 11401248 -172887414 - AluSx SINE Alu -1 311 1 1500 153 76 138 chr4 11401248 11401592 -172887070 - Tigger2a DNA MER2_type -2398 310 1 698 218 94 59 chr4 11401879 11402421 -172886241 - MLT1E3 LTR MaLR -1 623 1 2095 147 0 0 chr4 11402554 11402853 -172885809 + AluSx SINE Alu 1 299 -13 199 133 0 0 chr4 11403333 11403363 -172885299 - MIR SINE MIR -63 145 116 216 225 127 0 chr4 11403374 11403445 -172885217 - MIR SINE MIR -64 198 119 257 306 65 0 chr4 11403509 11403617 -172885045 - L2 LINE L2 -3 3269 3155 189 189 38 19 chr4 11403931 11403984 -172884678 - L2 LINE L2 -340 2973 2920 * 285 292 115 9 chr4 11403967 11404080 -172884582 + L3 LINE CR1 1353 1477 -100 227 359 35 7 chr4 11404089 11404234 -172884428 - L2 LINE L2 -798 2516 2368 702 257 91 53 chr4 11404789 11405054 -172883608 - MLT1J LTR MaLR -3 508 234 1930 137 0 31 chr4 11405091 11405412 -172883250 + AluSx SINE Alu 1 311 -1 226 333 0 0 chr4 11405989 11406061 -172882601 - MLT1L LTR MaLR -541 74 3 907 191 98 16 chr4 11406411 11406605 -172882057 - MSTD LTR MaLR 0 396 187 377 247 0 12 chr4 11407709 11407794 -172880868 + MER63 DNA MER1_type 678 761 -299 257 112 0 5 chr4 11407805 11407859 -172880803 - MLT2B1 LTR ERVL -1 519 480 211 93 47 0 chr4 11407859 11407902 -172880760 + GA-rich Low_complexity Low_complexity 2 46 0 1058 264 60 31 chr4 11407902 11408323 -172880339 - MLT2B1 LTR ERVL -37 517 7 2743 102 13 0 chr4 11408814 11409208 -172879454 - LTR8 LTR ERV1 0 691 293 788 155 21 14 chr4 11409201 11409343 -172879319 - MER4B LTR ERV1 -467 143 1 * 333 243 56 9 chr4 11409595 11409702 -172878960 - MLT1D LTR MaLR -71 396 285 1604 177 6 22 chr4 11409844 11410194 -172878468 - MER4A LTR ERV1 -5 659 257 476 163 0 12 chr4 11410190 11410270 -172878392 - MER4A LTR ERV1 -566 98 20 * 353 222 89 0 chr4 11410279 11410369 -172878293 - MLT1D LTR MaLR -402 103 6 915 260 108 25 chr4 11410372 11410734 -172877928 + LTR34 LTR ERV1 304 695 -4 189 280 115 48 chr4 11411960 11412206 -172876456 + L2 LINE L2 2722 3036 -277 1891 104 16 167 chr4 11412591 11413033 -172875629 - THE1C LTR MaLR 0 375 1 201 333 127 24 chr4 11414262 11414475 -172874187 + L2 LINE L2 2826 3060 -253 456 141 65 11 chr4 11414664 11414756 -172873906 - AluSg/x SINE Alu -20 289 193 1854 155 13 3 chr4 11414856 11415159 -172873503 + AluJb SINE Alu 1 306 -6 594 263 119 19 chr4 11415541 11415924 -172872738 + MLT1C LTR MaLR 64 458 -9 393 177 25 13 chr4 11416050 11416129 -172872533 + MIR SINE MIR 106 185 -77 282 350 148 11 chr4 11417365 11417548 -172871114 - MIR SINE MIR -6 256 49 265 235 49 49 chr4 11417693 11417795 -172870867 + MIR SINE MIR 17 118 -90 231 279 33 41 chr4 11419516 11419638 -172869024 + L2 LINE L2 2917 3037 -235 274 333 19 19 chr4 11420383 11420491 -172868171 + L2 LINE L2 3162 3269 -3 637 297 86 0 chr4 11420752 11420961 -172867701 - MER45C DNA AcHobo -21 932 706 353 273 91 0 chr4 11420961 11421071 -172867591 - MER45C DNA AcHobo -550 403 284 4710 132 101 11 chr4 11421101 11421344 -172867318 - MER4D LTR ERV1 -8 895 675 2183 137 16 44 chr4 11421344 11421730 -172866932 + THE1C LTR MaLR 1 375 0 4710 132 101 11 chr4 11421730 11422307 -172866355 - MER4D LTR ERV1 -228 675 1 468 188 170 0 chr4 11422307 11422418 -172866244 - MER45C DNA AcHobo -766 187 58 1938 156 0 0 chr4 11422764 11423071 -172865591 + AluJb SINE Alu 5 311 -1 1762 149 4 4 chr4 11423410 11423718 -172864944 - AluSx SINE Alu 0 310 3 440 267 31 63 chr4 11423874 11424065 -172864597 - MLT1J1 LTR MaLR -27 419 235 2082 124 29 29 chr4 11424067 11424413 -172864249 + MER4D LTR ERV1 2 347 -556 409 99 0 113 chr4 11424413 11424484 -172864178 - AluS SINE Alu -242 71 9 408 294 25 19 chr4 11424486 11424646 -172864016 + L1MDa LINE L1 1025 1185 -5355 34 24 0 0 chr4 11425305 11425346 -172863316 + AT_rich Low_complexity Low_complexity 1 41 0 1830 136 0 17 chr4 11425346 11425641 -172863021 - AluSq SINE Alu -23 290 1 2627 226 108 91 chr4 11425643 11426375 -172862287 + L1MB7 LINE L1 3934 4652 -1526 604 178 178 38 chr4 11426375 11426398 -172862264 + AluJb SINE Alu 113 131 -181 1967 135 10 0 chr4 11426398 11426687 -172861975 + AluSx SINE Alu 1 292 -20 604 178 178 38 chr4 11426687 11426820 -172861842 + AluJb SINE Alu 131 291 -21 2627 226 108 91 chr4 11426820 11427358 -172861304 + L1MB7 LINE L1 4652 5179 -999 1520 239 42 22 chr4 11427358 11427714 -172860948 + MLT1A1 LTR MaLR 3 365 0 2627 226 108 91 chr4 11427714 11428096 -172860566 + L1MB7 LINE L1 5179 5786 -392 951 119 8 0 chr4 11428096 11428230 -172860432 + AluJo SINE Alu 1 135 -177 1787 177 3 0 chr4 11428230 11428535 -172860127 + AluJb SINE Alu 1 306 -6 1594 201 23 18 chr4 11428548 11428932 -172859730 + L1MB7 LINE L1 5783 6168 -16 406 179 51 103 chr4 11428942 11429098 -172859564 + L1MDa LINE L1 1469 1616 -4924 855 149 0 15 chr4 11429302 11429436 -172859226 - FLAM_C SINE Alu -1 132 1 372 289 92 80 chr4 11429436 11429675 -172858987 + L1ME1 LINE L1 5920 6164 0 224 333 30 20 chr4 11430211 11430310 -172858352 + MIR SINE MIR 50 149 -113 259 281 112 0 chr4 11431575 11431664 -172856998 - MER5C DNA MER1_type -215 109 11 2106 126 3 22 chr4 11432042 11432359 -172856303 - AluSx SINE Alu -1 311 1 306 404 0 0 chr4 11432359 11432525 -172856137 - L1M4 LINE L1 -1102 5044 4879 199 252 191 17 chr4 11432561 11432676 -172855986 + L2 LINE L2 2957 3091 -181 269 317 60 11 chr4 11432761 11432947 -172855715 + MIR SINE MIR 64 261 -1 315 0 0 0 chr4 11433933 11433968 -172854694 + (TTCA)n Simple_repeat Simple_repeat 4 38 0 313 286 0 0 chr4 11433968 11434045 -172854617 + MIR SINE MIR 109 185 -77 321 291 27 9 chr4 11434598 11434708 -172853954 - L2 LINE L2 -3 3269 3158 225 285 154 32 chr4 11434699 11434822 -172853840 + MIR SINE MIR 55 192 -70 * 293 226 48 0 chr4 11434849 11434933 -172853729 - L1M4 LINE L1 -1416 4730 4643 2129 130 0 0 chr4 11434949 11435256 -172853406 - AluSx SINE Alu -5 307 1 2386 258 27 0 chr4 11435332 11436025 -172852637 - L1M4 LINE L1 -2159 3987 3276 757 278 66 66 chr4 11436213 11436562 -172852100 - MLT1J LTR MaLR -6 505 157 383 231 33 0 chr4 11436711 11436802 -172851860 - MIR3 SINE MIR -54 154 61 2566 50 0 0 chr4 11437693 11437996 -172850666 - AluY SINE Alu -8 303 1 245 303 59 8 chr4 11439062 11439181 -172849481 - MIR3 SINE MIR -25 183 59 1540 233 51 53 chr4 11439801 11439859 -172848803 - LTR26 LTR ERV1 -110 493 436 1835 161 10 3 chr4 11439859 11440169 -172848493 - AluJo SINE Alu 0 312 1 1540 233 51 53 chr4 11440169 11440604 -172848058 - LTR26 LTR ERV1 -167 436 1 202 326 53 0 chr4 11440868 11440963 -172847699 - L2 LINE L2 -269 3044 2945 355 306 59 27 chr4 11440987 11441206 -172847456 + L2 LINE L2 2962 3187 -85 217 357 62 23 chr4 11441279 11441400 -172847262 + L2 LINE L2 3173 3301 -12 1921 153 0 3 chr4 11441400 11441708 -172846954 + AluJb SINE Alu 1 307 -5 233 203 65 130 chr4 11441863 11441986 -172846676 - L1ME3A LINE L1 -17 6153 6039 1858 93 3 68 chr4 11442097 11442418 -172846244 + AluSq SINE Alu 8 307 -6 899 293 46 16 chr4 11442597 11443170 -172845492 - L1ME LINE L1 -479 5691 5100 2088 128 9 23 chr4 11443175 11443518 -172845144 + THE1B LTR MaLR 1 338 -26 1393 137 18 18 chr4 11443518 11443745 -172844917 + AluSx SINE Alu 64 290 -22 780 108 234 0 chr4 11443749 11443907 -172844755 - Ricksha DNA DNA -126 2728 2534 2859 136 36 51 chr4 11443914 11444303 -172844359 - Ricksha DNA DNA -385 2861 2483 2103 115 0 13 chr4 11444303 11444607 -172844055 + AluSx SINE Alu 3 302 -10 2859 136 36 51 chr4 11444607 11444829 -172843833 - Ricksha DNA DNA -763 2483 2259 1474 123 4 41 chr4 11444819 11445063 -172843599 - Ricksha DNA DNA -1302 1944 1710 * 556 144 0 27 chr4 11445049 11445160 -172843502 - Ricksha DNA DNA -3131 115 8 * 538 167 65 51 chr4 11445166 11445304 -172843358 - MLT1D LTR MaLR -363 142 3 1015 214 58 69 chr4 11446091 11446484 -172842178 + MLT1D LTR MaLR 4 392 -113 221 276 86 9 chr4 11446598 11446703 -172841959 + L2 LINE L2 2228 2340 -974 290 239 15 0 chr4 11446992 11447059 -172841603 + MIR SINE MIR 82 149 -113 329 155 17 0 chr4 11447221 11447279 -172841383 + LTR16A1 LTR ERVL 398 456 -1 262 80 40 0 chr4 11447425 11447475 -172841187 + CT-rich Low_complexity Low_complexity 2 53 0 2172 127 0 0 chr4 11448461 11448769 -172839893 + AluSq SINE Alu 1 308 -5 291 262 60 0 chr4 11449050 11449134 -172839528 + GA-rich Low_complexity Low_complexity 5 93 0 417 292 48 30 chr4 11450535 11450599 -172838063 + MIR SINE MIR 18 79 -183 2221 139 50 6 chr4 11450599 11450958 -172837704 - THE1C LTR MaLR 0 375 1 417 292 48 30 chr4 11450958 11451061 -172837601 + MIR SINE MIR 79 188 -74 202 246 108 0 chr4 11453515 11453580 -172835082 - MIR3 SINE MIR -52 156 85 1211 234 170 57 chr4 11453759 11454289 -172834373 + MLT1E LTR MaLR 2 591 -2 217 349 63 24 chr4 11454761 11454887 -172833775 - MIR3 SINE MIR -20 188 58 226 344 0 0 chr4 11454934 11454995 -172833667 + polypurine Low_complexity Low_complexity 5 65 0 676 303 48 4 chr4 11455065 11455296 -172833366 - MIR SINE MIR -3 259 19 199 250 42 0 chr4 11455474 11455522 -172833140 + L2 LINE L2 3241 3290 -23 1802 141 0 17 chr4 11455712 11456002 -172832660 + AluSx SINE Alu 18 302 -10 228 330 59 8 chr4 11456010 11456128 -172832534 - MER67A LTR ERV1 -17 526 403 2032 137 0 13 chr4 11456132 11456447 -172832215 - AluSx SINE Alu -1 311 1 1525 147 139 8 chr4 11456448 11456706 -172831956 - AluJo SINE Alu -6 296 5 1214 217 11 22 chr4 11456721 11456998 -172831664 - L1PA15 LINE L1 -1 6164 5891 209 211 18 0 chr4 11457059 11457116 -172831546 + (CACCC)n Simple_repeat Simple_repeat 4 61 0 1446 102 9 13 chr4 11458082 11458308 -172830354 + MSTA LTR MaLR 204 428 0 393 359 46 30 chr4 11458315 11458619 -172830043 + L1MEc LINE L1 168 552 -5653 3246 100 105 45 chr4 11458830 11458964 -172829698 - LTR61 LTR ERV1 0 595 471 2297 74 0 0 chr4 11458964 11459271 -172829391 - AluY SINE Alu 0 307 1 3246 100 105 45 chr4 11459271 11459696 -172828966 - LTR61 LTR ERV1 -124 471 1 34 24 0 0 chr4 11459774 11459815 -172828847 + AT_rich Low_complexity Low_complexity 1 41 0 201 74 0 0 chr4 11459831 11459858 -172828804 + (A)n Simple_repeat Simple_repeat 1 27 0 1645 157 144 131 chr4 11460289 11460915 -172827747 - MER51A LTR ERV1 0 634 1 348 342 75 5 chr4 11460995 11461194 -172827468 + MER113 DNA MER1_type? 1 213 -308 443 241 84 2 chr4 11461228 11461388 -172827274 + MIR SINE MIR 1 171 -62 261 242 0 0 chr4 11461665 11461727 -172826935 + Tigger3(Golem) DNA MER2_type 5 66 -2963 602 88 8 96 chr4 11461727 11461852 -172826810 + MER4A LTR ERV1 29 142 -522 4553 104 7 35 chr4 11461860 11462541 -172826121 - MER4A LTR ERV1 -2 662 1 1595 182 12 38 chr4 11462563 11462909 -172825753 + Tigger3(Golem) DNA MER2_type 373 709 -2320 319 261 180 0 chr4 11462913 11463018 -172825644 + Tigger3(Golem) DNA MER2_type 664 788 -2241 2855 175 9 30 chr4 11463018 11463583 -172825079 - LTR8 LTR ERV1 0 691 139 1920 87 52 13 chr4 11463583 11464111 -172824551 - MER4A LTR ERV1 0 664 1 812 105 0 59 chr4 11464111 11464262 -172824400 - LTR8 LTR ERV1 -549 142 1 1649 151 38 0 chr4 11464262 11464549 -172824113 + Tigger3(Golem) DNA MER2_type 785 1082 -1947 608 184 0 0 chr4 11464549 11464663 -172823999 - LTR8A LTR ERV1 0 727 614 6176 139 95 112 chr4 11464663 11466382 -172822280 + pTR5 LTR ERV1 744 2433 -5 2767 165 46 28 chr4 11466384 11466857 -172821805 - LTR8A LTR ERV1 -103 624 135 2204 81 0 3 chr4 11466857 11467185 -172821477 + AluSx SINE Alu 1 327 0 2767 165 46 28 chr4 11467185 11467323 -172821339 - LTR8A LTR ERV1 -592 135 1 1869 182 40 109 chr4 11467323 11467925 -172820737 + Tigger3(Golem) DNA MER2_type 1079 1638 -1391 3508 67 7 7 chr4 11467925 11468373 -172820289 + LTR7 LTR ERV1 1 448 -2 19570 115 33 25 chr4 11468375 11472458 -172816204 + HERVH LTR ERV1 1 3992 -3721 3965 146 8 1 chr4 11472461 11473119 -172815543 + HERVH LTR ERV1 4488 5149 -2564 1223 128 20 0 chr4 11473138 11473342 -172815320 + HERVH LTR ERV1 5612 5819 -1894 * 2192 98 45 3 chr4 11473340 11473716 -172814946 + HERVH LTR ERV1 7322 7713 0 3532 56 14 5 chr4 11473716 11474160 -172814502 + LTR7 LTR ERV1 1 448 -2 3677 157 40 11 chr4 11474186 11474932 -172813730 + Tigger3(Golem) DNA MER2_type 1646 2413 -616 246 105 0 0 chr4 11474934 11474972 -172813690 + AluJb SINE Alu 21 58 -75 306 158 24 49 chr4 11474978 11475060 -172813602 + MER50 LTR ERV1 7 86 -648 4246 116 36 25 chr4 11475099 11475847 -172812815 - MER4E LTR ERV1 -21 758 3 2606 216 47 8 chr4 11475849 11476470 -172812192 + MER50 LTR ERV1 83 727 -7 1045 144 214 19 chr4 11476475 11476690 -172811972 + AluJb SINE Alu 53 309 -3 1760 198 122 25 chr4 11476690 11477241 -172811421 + Tigger3(Golem) DNA MER2_type 2425 3028 -1 1764 171 10 10 chr4 11479519 11479823 -172808839 + AluJo SINE Alu 1 304 -8 208 348 37 37 chr4 11480999 11481134 -172807528 - L2 LINE L2 -292 3021 2887 361 273 108 14 chr4 11484241 11484380 -172804282 + L2 LINE L2 2920 3071 -201 229 349 0 0 chr4 11484453 11484536 -172804126 + L1MC5 LINE L1 7711 7793 -168 207 250 19 0 chr4 11484708 11484760 -172803902 + L2 LINE L2 3142 3194 -78 1814 147 33 3 chr4 11488788 11489088 -172799574 + AluSq SINE Alu 1 309 -4 216 333 18 36 chr4 11489757 11489868 -172798794 - MIR3 SINE MIR -54 154 46 2197 154 6 3 chr4 11491334 11491691 -172796971 - L1PA16 LINE L1 -11 6155 5798 1345 158 40 62 chr4 11491882 11492282 -172796380 - MER4B-int LTR ERV1 -5523 1235 845 895 118 0 0 chr4 11492363 11492490 -172796172 - AluJb SINE Alu -185 127 1 5210 139 33 12 chr4 11492495 11493397 -172795265 - MER4B-int LTR ERV1 -2692 4066 3146 539 301 62 40 chr4 11493397 11493623 -172795039 - MIR SINE MIR -11 251 21 268 379 75 0 chr4 11494019 11494193 -172794469 + MIR SINE MIR 28 214 -48 952 140 33 0 chr4 11494734 11494884 -172793778 - FRAM SINE Alu -12 164 10 306 95 19 3 chr4 11495650 11495869 -172792793 + AluSx SINE Alu 1 295 -7 1842 163 0 3 chr4 11495869 11496164 -172792498 - AluJb SINE Alu -18 294 1 205 342 38 0 chr4 11496611 11496690 -172791972 - L2 LINE L2 0 3272 3191 207 314 48 32 chr4 11496957 11497081 -172791581 - MIR SINE MIR -14 248 123 327 169 0 0 chr4 11497364 11497435 -172791227 + (TG)n Simple_repeat Simple_repeat 1 71 0 186 326 11 22 chr4 11498516 11498605 -172790057 + MIR SINE MIR 20 107 -155 386 295 20 67 chr4 11498663 11498812 -172789850 - MIR SINE MIR -19 243 102 183 229 21 0 chr4 11498812 11498860 -172789802 - MIR SINE MIR -103 159 111 307 215 9 47 chr4 11499321 11499428 -172789234 + CT-rich Low_complexity Low_complexity 1 103 0 285 286 76 0 chr4 11503255 11503374 -172785288 + (CATG)n Simple_repeat Simple_repeat 1 128 0 273 360 0 0 chr4 11503715 11503801 -172784861 - L2 LINE L2 -1 3271 3186 316 327 73 7 chr4 11504003 11504153 -172784509 - MARNA DNA Mariner -30 556 397 192 40 0 0 chr4 11505015 11505040 -172783622 + (CCTG)n Simple_repeat Simple_repeat 2 26 0 186 359 126 0 chr4 11506117 11506220 -172782442 - MIR SINE MIR -114 148 33 215 292 0 0 chr4 11506798 11506869 -172781793 + MIR SINE MIR 63 134 -74 207 171 0 0 chr4 11507733 11507768 -172780894 + (TGAG)n Simple_repeat Simple_repeat 4 38 0 1903 138 0 14 chr4 11508121 11508412 -172780250 - AluJb SINE Alu -25 287 1 180 0 0 0 chr4 11509152 11509172 -172779490 + (T)n Simple_repeat Simple_repeat 1 20 0 266 227 61 0 chr4 11510904 11510970 -172777692 - HsTC2 DNA Tc2 -4 1894 1825 21 0 0 0 chr4 11512008 11512029 -172776633 + GC_rich Low_complexity Low_complexity 1 21 0 244 219 68 14 chr4 11513688 11513761 -172774901 + MIR SINE MIR 46 122 -140 1108 197 58 39 chr4 11513903 11514012 -172774650 - MER33 DNA MER1_type -2261 324 219 2397 74 0 0 chr4 11514012 11514310 -172774352 - AluY SINE Alu -13 298 1 1108 197 58 39 chr4 11514310 11514510 -172774152 - MER33 DNA MER1_type -2366 219 9 1148 271 75 29 chr4 11514908 11515292 -172773370 + MLT1C LTR MaLR 1 409 -58 2256 95 7 0 chr4 11515292 11515588 -172773074 - AluSg SINE Alu -12 298 1 1148 271 75 29 chr4 11515588 11515646 -172773016 + MLT1C LTR MaLR 409 463 -4 417 237 22 74 chr4 11515808 11515943 -172772719 - MIR SINE MIR -29 233 106 209 359 106 0 chr4 11517048 11517190 -172771472 - MIR SINE MIR -67 195 39 350 330 26 0 chr4 11518454 11518569 -172770093 + MIR SINE MIR 75 192 -70 212 394 44 22 chr4 11519084 11519221 -172769441 + MIR SINE MIR 91 230 -32 23 0 0 0 chr4 11519360 11519383 -172769279 + AT_rich Low_complexity Low_complexity 1 23 0 863 144 0 8 chr4 11519383 11519515 -172769147 - FLAM_C SINE Alu -1 132 2 305 285 149 14 chr4 11521055 11521269 -172767393 - MER76 LTR ERV -444 244 2 428 281 36 36 chr4 11521539 11521735 -172766927 + MER3 DNA MER1_type 14 209 0 214 370 11 22 chr4 11521914 11522006 -172766656 - L2 LINE L2 0 3272 3182 1969 85 0 4 chr4 11523720 11523980 -172764682 - AluSq SINE Alu -14 299 41 318 236 0 14 chr4 11524441 11524513 -172764149 - MIR SINE MIR -64 144 74 782 147 17 17 chr4 11524546 11524723 -172763939 + (TCCA)n Simple_repeat Simple_repeat 4 180 0 523 170 33 0 chr4 11524744 11524897 -172763765 + (TCCA)n Simple_repeat Simple_repeat 1 158 0 227 194 183 32 chr4 11526257 11526350 -172762312 + MIR SINE MIR 109 215 -47 210 222 0 0 chr4 11527880 11527934 -172760728 + (TG)n Simple_repeat Simple_repeat 1 54 0 205 393 40 0 chr4 11527955 11528105 -172760557 - L2 LINE L2 -192 3080 2925 889 192 7 9 chr4 11528252 11528714 -172759948 + (CTCA)n Simple_repeat Simple_repeat 1 461 0 825 138 0 0 chr4 11530237 11530382 -172758280 + (CTCA)n Simple_repeat Simple_repeat 3 147 0 231 226 24 60 chr4 11531078 11531162 -172757500 + L2 LINE L2 2900 2980 -292 310 219 24 137 chr4 11531727 11531932 -172756730 - MER53 DNA DNA 0 189 8 2363 87 0 0 chr4 11532396 11532696 -172755966 - AluSc SINE Alu -9 300 1 311 333 115 19 chr4 11533257 11533413 -172755249 + MIR SINE MIR 6 176 -86 262 346 74 0 chr4 11534048 11534210 -172754452 - L2 LINE L2 -174 3098 2925 327 306 101 34 chr4 11535707 11535975 -172752687 - L2 LINE L2 -92 3180 2895 318 267 56 0 chr4 11536525 11536615 -172752047 - MIR SINE MIR -120 142 48 488 266 145 5 chr4 11536677 11536884 -172751778 + ORSL DNA AcHobo 1 236 -39 243 245 38 33 chr4 11537488 11537608 -172751054 - MIR SINE MIR -64 144 21 264 331 16 16 chr4 11538291 11538415 -172750247 - L2 LINE L2 -212 3060 2937 972 225 80 37 chr4 11539697 11540022 -172748640 - MLT1B LTR MaLR -48 342 4 2121 98 0 53 chr4 11540965 11541283 -172747379 - AluSx SINE Alu -11 301 1 1636 211 107 31 chr4 11541395 11541808 -172746854 + MER65A LTR ERV1 1 444 -1 330 269 35 58 chr4 11541810 11541942 -172746720 - L1MC4a LINE L1 -1087 6721 6592 1644 115 48 83 chr4 11541942 11542256 -172746406 + AluSg1 SINE Alu 1 303 -6 330 269 35 58 chr4 11542256 11542294 -172746368 - L1MC4a LINE L1 -1216 6592 6555 318 345 79 0 chr4 11542832 11542971 -172745691 + HAL1 LINE L1 1114 1263 -1244 1993 96 0 38 chr4 11542971 11543293 -172745369 + AluSx SINE Alu 1 311 0 353 355 103 34 chr4 11543388 11543573 -172745089 - MIR SINE MIR 0 262 56 2451 58 0 13 chr4 11543573 11543886 -172744776 + AluY SINE Alu 1 309 -2 353 355 103 34 chr4 11543886 11543934 -172744728 - MIR SINE MIR -206 56 13 2278 81 0 0 chr4 11544623 11544918 -172743744 + AluSg SINE Alu 1 295 -15 932 231 80 37 chr4 11545348 11545673 -172742989 - MLT1B LTR MaLR -48 342 4 576 70 0 0 chr4 11746313 11746399 -172542263 + (TC)n Simple_repeat Simple_repeat 1 86 0 291 28 0 0 chr4 11747597 11747633 -172541029 + (TG)n Simple_repeat Simple_repeat 1 36 0 2065 109 4 0 chr4 11748258 11748533 -172540129 - AluSx SINE Alu -36 276 1 862 235 40 0 chr4 11750311 11750511 -172538151 + MER58A DNA MER1_type 1 208 -16 435 59 176 0 chr4 11751742 11751810 -172536852 + MADE1 DNA Mariner 1 80 0 609 139 10 0 chr4 11752344 11752445 -172536217 - AluSg/x SINE Alu 0 309 208 21410 64 1 1 chr4 11752546 11755151 -172533511 + HERVE LTR ERV1 4439 7042 -771 1968 251 87 33 chr4 11755280 11756001 -172532661 + L2 LINE L2 1622 2381 -933 611 256 77 93 chr4 11756352 11756476 -172532186 - L1MCc LINE L1 -5921 502 377 1775 76 69 65 chr4 11756476 11756753 -172531909 + AluSg SINE Alu 1 278 -32 1122 50 6 12 chr4 11756754 11756914 -172531748 + (GAAA)n Simple_repeat Simple_repeat 2 160 0 611 256 77 93 chr4 11756914 11757279 -172531383 - L1MCc LINE L1 -6045 378 19 355 359 30 6 chr4 11757389 11757556 -172531106 - L1MEc LINE L1 -4658 1738 1568 23 78 0 0 chr4 11757666 11757717 -172530945 + AT_rich Low_complexity Low_complexity 1 51 0 24 0 0 0 chr4 11757946 11757970 -172530692 + AT_rich Low_complexity Low_complexity 1 24 0 2032 122 3 53 chr4 11757980 11758300 -172530362 - AluSg SINE Alu -6 304 1 21 36 0 0 chr4 11759901 11759929 -172528733 + AT_rich Low_complexity Low_complexity 1 28 0 750 206 0 0 chr4 11760150 11760276 -172528386 - FLAM_C SINE Alu -17 126 1 3183 209 25 80 chr4 11760490 11761515 -172527147 + LTR5 LTR ERVK 1 969 0 34105 189 14 15 chr4 11761515 11768939 -172519723 + HERVK LTR ERVK 1 7289 -128 2642 224 21 79 chr4 11769051 11770023 -172518639 + LTR5 LTR ERVK 55 969 0 439 263 96 13 chr4 11770337 11770493 -172518169 + MIR SINE MIR 79 247 -15 309 272 76 0 chr4 11770522 11770614 -172518048 + L2 LINE L2 3162 3260 -12 510 247 34 21 chr4 11770977 11771174 -172517488 + MIR SINE MIR 23 217 -45 2196 125 0 0 chr4 11771198 11771494 -172517168 + AluSq SINE Alu 1 296 -17 3417 130 39 2 chr4 11771581 11772088 -172516574 + MER1A DNA MER1_type 1 526 -1 719 181 36 104 chr4 11772105 11772254 -172516408 + MER3 DNA MER1_type 4 135 -74 2109 128 3 0 chr4 11772254 11772543 -172516119 - AluSx SINE Alu -16 296 7 719 181 36 104 chr4 11772543 11772614 -172516048 + MER3 DNA MER1_type 135 209 0 679 237 95 0 chr4 11772763 11772953 -172515709 - MIR SINE MIR -6 256 49 5580 73 1 1 chr4 11773669 11774369 -172514293 + HERVE LTR ERV1 7113 7812 -1 1637 221 47 44 chr4 11774458 11774866 -172513796 + LTR2 LTR ERV1 41 449 0 4161 79 0 4 chr4 11774866 11775420 -172513242 + HERVH LTR ERV1 3442 3993 -3720 4316 153 1 1 chr4 11775422 11776084 -172512578 + HERVH LTR ERV1 4488 5149 -2564 1367 118 43 0 chr4 11776085 11776296 -172512366 + HERVH LTR ERV1 5600 5819 -1894 2441 98 45 13 chr4 11776296 11776674 -172511988 + HERVH LTR ERV1 7324 7713 0 2479 93 128 5 chr4 11776675 11777073 -172511589 + LTR7 LTR ERV1 2 448 -2 2323 96 3 0 chr4 11777085 11777387 -172511275 - AluSp SINE Alu -8 305 3 563 242 27 32 chr4 11777397 11777583 -172511079 - MLT1D LTR MaLR -320 185 1 219 350 34 17 chr4 11778763 11778880 -172509782 - L2 LINE L2 -15 3298 3180 1866 155 7 36 chr4 11778918 11779227 -172509435 + AluSx SINE Alu 1 300 -12 378 0 0 0 chr4 11779513 11779555 -172509107 + (CAT)n Simple_repeat Simple_repeat 3 44 0 730 160 80 8 chr4 11779665 11779790 -172508872 + THE1B LTR MaLR 196 329 -35 258 207 0 0 chr4 11780786 11780844 -172507818 + GA-rich Low_complexity Low_complexity 2 59 0 4148 289 25 38 chr4 11781749 11783403 -172505259 + L1PBa LINE L1 6 1639 -5224 743 189 10 136 chr4 11783380 11783586 -172505076 + L1PBb LINE L1 14 193 -6011 * 1431 189 0 20 chr4 11783589 11783843 -172504819 + L1M1 LINE L1 554 802 -6763 1117 103 59 49 chr4 11783836 11784039 -172504623 + THE1C-int LTR MaLR 1376 1580 0 * 1604 176 65 49 chr4 11784039 11784408 -172504254 + THE1C LTR MaLR 1 375 0 330 252 0 23 chr4 11785465 11785596 -172503066 + (TTA)n Simple_repeat Simple_repeat 2 129 0 252 120 0 0 chr4 11787253 11787303 -172501359 + (CA)n Simple_repeat Simple_repeat 1 50 0 10632 125 3 6 chr4 11787359 11789511 -172499151 + L1PA8A LINE L1 3700 5847 -284 2071 149 0 3 chr4 11789632 11789940 -172498722 + AluSg SINE Alu 1 307 -3 302 258 50 75 chr4 11789995 11790154 -172498508 - L2 LINE L2 0 3313 3159 982 207 69 0 chr4 11790313 11790530 -172498132 - LTR16A1 LTR ERVL 0 457 226 356 250 176 0 chr4 11791172 11791308 -172497354 - MIR SINE MIR -72 190 31 1375 176 71 15 chr4 11791329 11791596 -172497066 - AluJo SINE Alu -30 282 1 534 123 0 0 chr4 11791606 11791679 -172496983 - Alu SINE Alu -14 297 225 316 319 88 38 chr4 11791876 11792114 -172496548 - MLT1K LTR MaLR -319 269 20 1091 108 0 13 chr4 11792245 11792402 -172496260 + AluSp/q SINE Alu 159 313 0 840 147 0 29 chr4 11792506 11792642 -172496020 + AluJo SINE Alu 2 133 -169 1340 184 157 0 chr4 11792647 11792908 -172495754 + AluSx SINE Alu 1 302 0 614 211 0 0 chr4 11792914 11793023 -172495639 + AluJo SINE Alu 141 249 -63 253 267 47 0 chr4 11793045 11793131 -172495531 - L1MC4 LINE L1 -1339 6703 6614 246 272 0 22 chr4 11793099 11793191 -172495471 + L1MC4 LINE L1 6614 6703 -1339 * 568 269 38 0 chr4 11793245 11793405 -172495257 + MER104 DNA Tc2 11 176 -4 2161 125 0 0 chr4 11794284 11794571 -172494091 + AluSx SINE Alu 1 287 -25 620 62 31 0 chr4 11794571 11794667 -172493995 + (TATAA)n Simple_repeat Simple_repeat 4 102 0 1762 189 0 22 chr4 11794805 11795123 -172493539 + AluJo SINE Alu 1 311 -1 207 322 69 0 chr4 11795192 11795279 -172493383 - MIR SINE MIR -74 188 96 1491 180 0 16 chr4 11795299 11795549 -172493113 + AluJb SINE Alu 1 246 -66 2385 160 48 14 chr4 11795549 11795986 -172492676 + MER66B LTR ERV1 1 452 -34 3976 118 90 94 chr4 11795987 11797372 -172491290 + pTR5 LTR ERV1 743 2438 0 315 172 0 47 chr4 11797405 11797469 -172491193 + AluJb SINE Alu 238 298 -4 2039 168 35 34 chr4 11797585 11798060 -172490602 + L1MB7 LINE L1 5651 6127 -57 1608 163 0 8 chr4 11798069 11798321 -172490341 - AluJb SINE Alu -27 285 36 329 140 18 0 chr4 11798421 11798478 -172490184 - AluS SINE Alu -240 60 3 303 146 0 0 chr4 11798624 11798679 -172489983 + (GGGA)n Simple_repeat Simple_repeat 3 57 0 2160 112 17 10 chr4 11798985 11799281 -172489381 - AluSg SINE Alu -12 298 1 1120 153 14 28 chr4 11799358 11799574 -172489088 + MER73 LTR ERVL 432 644 0 211 284 0 78 chr4 11800060 11800117 -172488545 - MER5B DNA MER1_type -81 97 50 932 150 0 0 chr4 11800117 11800250 -172488412 + FLAM_A SINE Alu 1 133 0 211 284 0 78 chr4 11800250 11800294 -172488368 - MER5B DNA MER1_type -128 50 4 235 191 88 44 chr4 11800308 11800376 -172488286 + MLT1F LTR MaLR 1 71 -471 * 344 216 0 0 chr4 11800373 11800447 -172488215 - MER66B LTR ERV1 -412 74 1 914 123 0 8 chr4 11800808 11800938 -172487724 + FLAM_C SINE Alu 1 129 -4 1877 141 3 49 chr4 11801123 11801302 -172487360 - AluSx SINE Alu -1 311 152 2412 87 0 3 chr4 11801302 11801602 -172487060 - AluY SINE Alu -12 299 1 1877 141 3 49 chr4 11801602 11801748 -172486914 - AluSx SINE Alu -160 152 1 474 241 16 88 chr4 11802474 11802610 -172486052 + MER5B DNA MER1_type 2 138 -51 1950 154 0 3 chr4 11802610 11802908 -172485754 - AluJo SINE Alu -13 299 3 474 241 16 88 chr4 11802908 11802957 -172485705 + MER5B DNA MER1_type 138 189 0 371 280 28 51 chr4 11802975 11803161 -172485501 - MER5A DNA MER1_type -6 172 2 1190 223 113 22 chr4 11803524 11803595 -172485067 + MLT1C LTR MaLR 6 69 -398 2066 151 3 0 chr4 11803595 11803893 -172484769 + AluSx SINE Alu 1 299 -13 1190 223 113 22 chr4 11803893 11804230 -172484432 + MLT1C LTR MaLR 69 451 -16 2285 111 0 0 chr4 11804284 11804581 -172484081 + AluSp SINE Alu 1 297 -16 1927 120 7 57 chr4 11804788 11805146 -172483516 + AluSq SINE Alu 1 343 0 257 182 0 0 chr4 11805329 11805373 -172483289 + AluJo SINE Alu 1 44 -258 3902 126 103 48 chr4 11805418 11805863 -172482799 + LTR1 LTR ERV1 1 505 -280 1797 87 0 4 chr4 11805863 11806092 -172482570 + AluY SINE Alu 16 243 -68 3902 126 103 48 chr4 11806092 11806390 -172482272 + LTR1 LTR ERV1 505 785 0 1508 166 0 66 chr4 11806392 11806681 -172481981 + AluJo SINE Alu 40 309 -3 1916 143 0 26 chr4 11807222 11807529 -172481133 + AluSx SINE Alu 1 299 -13 248 0 31 0 chr4 11807538 11807570 -172481092 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 355 43 0 0 chr4 11807863 11807955 -172480707 + AluSp/q SINE Alu 239 330 0 1768 142 32 11 chr4 11808035 11808316 -172480346 + AluSx SINE Alu 3 289 -23 2102 135 23 0 chr4 11809593 11809897 -172478765 + AluSx SINE Alu 1 311 -1 222 258 93 10 chr4 11810006 11810103 -172478559 + MIR SINE MIR 106 210 -52 248 290 29 22 chr4 11810312 11810450 -172478212 + L1MB3 LINE L1 6038 6176 -7 872 176 11 43 chr4 11815475 11815663 -172472999 - LTR5 LTR ERVK 0 969 788 2800 201 16 48 chr4 11815842 11816508 -172472154 - LTR5 LTR ERVK -324 645 1 244 326 23 6 chr4 11817917 11818089 -172470573 + L1MB3 LINE L1 6009 6183 0 317 230 0 30 chr4 11818995 11819095 -172469567 + (TAA)n Simple_repeat Simple_repeat 3 99 0 534 314 37 8 chr4 11819817 11820062 -172468600 + LTR16A LTR ERVL 199 450 0 2155 143 0 0 chr4 11820603 11820903 -172467759 - AluSc SINE Alu -9 300 1 856 151 0 146 chr4 11821302 11821501 -172467161 - AluSg/x SINE Alu -18 294 125 228 193 4 0 chr4 11821692 11821736 -172466926 - L2 LINE L2 -34 3277 3202 1872 174 3 0 chr4 11821808 11822102 -172466560 - AluSx SINE Alu -17 295 1 406 302 45 26 chr4 11822597 11822865 -172465797 + L1ME2 LINE L1 5706 5978 -186 874 142 43 21 chr4 11822866 11823007 -172465655 + AluSq/x SINE Alu 6 149 -163 1580 157 0 41 chr4 11823011 11823304 -172465358 + L1PA16 LINE L1 5884 6164 -2 3318 212 29 51 chr4 11823304 11823624 -172465038 + L1MA9 LINE L1 5323 5648 -664 326 74 19 0 chr4 11823624 11823678 -172464984 + (TA)n Simple_repeat Simple_repeat 1 55 0 3318 212 29 51 chr4 11823678 11824360 -172464302 + L1MA9 LINE L1 5648 6303 -9 497 311 68 27 chr4 11824415 11824637 -172464025 + MLT1J LTR MaLR 225 455 -56 22 35 0 0 chr4 11824907 11824936 -172463726 + AT_rich Low_complexity Low_complexity 1 29 0 187 224 184 13 chr4 11827110 11827186 -172461476 - L2 LINE L2 -5 3308 3220 234 62 0 0 chr4 11827512 11827544 -172461118 + (TG)n Simple_repeat Simple_repeat 1 32 0 236 287 189 25 chr4 11827873 11828000 -172460662 - MIR3 SINE MIR -67 141 6 25 51 0 0 chr4 11828194 11828233 -172460429 + AT_rich Low_complexity Low_complexity 1 39 0 355 323 31 57 chr4 11828537 11828729 -172459933 + MIR3 SINE MIR 5 191 -17 899 231 57 9 chr4 11829108 11829424 -172459238 + L1MA10 LINE L1 5987 6317 -17 2245 88 3 0 chr4 11830209 11830517 -172458145 + AluSx SINE Alu 1 309 0 2226 119 7 10 chr4 11831134 11831444 -172457218 - AluSx SINE Alu -2 310 2 1476 174 45 77 chr4 11831642 11831952 -172456710 + AluJo SINE Alu 1 300 -12 643 256 96 27 chr4 11832113 11832332 -172456330 + MIR SINE MIR 29 262 0 595 139 0 30 chr4 11832557 11832658 -172456004 - AluS SINE Alu -214 99 2 540 187 27 73 chr4 11832662 11832812 -172455850 - MLT1C LTR MaLR -284 183 41 1516 168 31 58 chr4 11832831 11833122 -172455540 - AluJo SINE Alu -11 301 19 21 36 0 0 chr4 11833333 11833361 -172455301 + AT_rich Low_complexity Low_complexity 1 28 0 2178 111 7 0 chr4 11833796 11834085 -172454577 + AluSc SINE Alu 1 291 -18 2178 106 3 10 chr4 11834179 11834481 -172454181 + AluSx SINE Alu 1 300 -12 313 302 103 9 chr4 11835585 11835701 -172452961 + L2 LINE L2 3184 3310 -3 206 104 42 83 chr4 11837899 11837947 -172450715 - MIR SINE MIR -85 177 132 869 248 65 0 chr4 11837968 11838182 -172450480 + MIR SINE MIR 13 240 -22 810 239 90 44 chr4 11838228 11838674 -172449988 - L2 LINE L2 -50 3263 2777 2174 128 0 0 chr4 11840109 11840406 -172448256 + AluSx SINE Alu 1 297 -15 287 274 212 28 chr4 11841309 11841667 -172446995 + LTR33A LTR ERVL 84 507 -16 2128 136 10 0 chr4 11841680 11841989 -172446673 - AluSx SINE Alu 0 312 1 709 183 32 8 chr4 11842515 11842641 -172446021 - FLAM_A SINE Alu -4 129 1 322 268 74 63 chr4 11842932 11843086 -172445576 + MIR SINE MIR 26 177 -68 2028 107 52 14 chr4 11843163 11843296 -172445366 + AluSx SINE Alu 1 128 -184 2056 157 0 0 chr4 11843296 11843596 -172445066 + AluSq SINE Alu 1 300 -13 2028 107 52 14 chr4 11843596 11843753 -172444909 + AluSx SINE Alu 128 302 -10 520 307 79 0 chr4 11843824 11844039 -172444623 - L1MD2 LINE L1 -365 5994 5763 256 190 6 20 chr4 11845812 11845886 -172442776 + MIR3 SINE MIR 81 154 -54 243 313 137 0 chr4 11846037 11846168 -172442494 - MIR SINE MIR -32 230 82 1993 139 3 19 chr4 11846445 11846761 -172441901 + AluJb SINE Alu 1 311 -1 1487 158 15 11 chr4 11846936 11847209 -172441453 + L1PA8A LINE L1 5858 6131 0 366 80 0 0 chr4 11847211 11847261 -172441401 + (CATA)n Simple_repeat Simple_repeat 4 53 0 392 214 10 10 chr4 11847481 11847579 -172441083 - L1M3 LINE L1 -432 5748 5651 * 443 300 71 74 chr4 11847578 11847934 -172440728 - L1M3 LINE L1 -766 5380 5021 245 380 8 4 chr4 11848064 11848298 -172440364 - L1M3 LINE L1 -1192 4954 4720 183 188 0 0 chr4 11848378 11848426 -172440236 + (CA)n Simple_repeat Simple_repeat 1 48 0 348 130 0 0 chr4 11850903 11850972 -172437690 + (CA)n Simple_repeat Simple_repeat 1 69 0 336 181 0 0 chr4 11853004 11853087 -172435575 + (CA)n Simple_repeat Simple_repeat 1 83 0 350 114 14 0 chr4 11855649 11855719 -172432943 + (CA)n Simple_repeat Simple_repeat 1 71 0 303 193 0 0 chr4 11857751 11857834 -172430828 + (CA)n Simple_repeat Simple_repeat 1 83 0 330 134 0 0 chr4 11860396 11860463 -172428199 + (CA)n Simple_repeat Simple_repeat 1 67 0 303 193 0 0 chr4 11862495 11862578 -172426084 + (CA)n Simple_repeat Simple_repeat 1 83 0 348 130 0 0 chr4 11865139 11865208 -172423454 + (CA)n Simple_repeat Simple_repeat 1 69 0 303 193 0 0 chr4 11867240 11867323 -172421339 + (CA)n Simple_repeat Simple_repeat 1 83 0 311 132 15 0 chr4 11869884 11869952 -172418710 + (CA)n Simple_repeat Simple_repeat 1 69 0 303 193 0 0 chr4 11871985 11872068 -172416594 + (CA)n Simple_repeat Simple_repeat 1 83 0 281 153 14 0 chr4 11874630 11874702 -172413960 + (CA)n Simple_repeat Simple_repeat 1 73 0 273 198 0 0 chr4 11876733 11876814 -172411848 + (CA)n Simple_repeat Simple_repeat 1 81 0 728 284 5 10 chr4 11929019 11929223 -172359439 + L1M3a LINE L1 66 268 -5687 5630 235 17 6 chr4 11929261 11930669 -172357993 - L1P LINE L1 -3253 2893 1470 872 183 34 13 chr4 11930769 11931004 -172357658 + L1MA7 LINE L1 6042 6281 -10 1293 265 6 3 chr4 11931029 11931361 -172357301 + L1MB7 LINE L1 5319 5651 -527 522 230 8 0 chr4 11931374 11931500 -172357162 + L1MB7 LINE L1 5763 5889 -295 706 167 109 23 chr4 11931532 11931706 -172356956 + MLT1F1 LTR MaLR 379 567 0 1618 93 0 22 chr4 11931816 11932041 -172356621 + AluY SINE Alu 35 254 -57 1882 127 65 9 chr4 11932218 11932540 -172356122 - L1MB1 LINE L1 -1 6167 5828 208 409 55 0 chr4 11932638 11932765 -172355897 + MIR3 SINE MIR 11 144 -64 5425 198 30 11 chr4 11933003 11934447 -172354215 + L1P4 LINE L1 4065 5529 -637 2934 120 9 2 chr4 11934547 11935014 -172353648 - L1P LINE L1 -3362 2784 2315 1099 127 18 0 chr4 11935014 11935180 -172353482 - AluSp SINE Alu -144 169 1 1916 218 65 28 chr4 11935263 11935840 -172352822 - L1MA9 LINE L1 -44 6268 5668 227 309 12 0 chr4 11935908 11935989 -172352673 - L1M4c LINE L1 -4585 1799 1718 1781 215 31 0 chr4 11936051 11936376 -172352286 + Tigger7 DNA MER2_type 7 341 -392 25 31 0 0 chr4 11936383 11936415 -172352247 + AT_rich Low_complexity Low_complexity 1 32 0 616 228 49 0 chr4 11936420 11936543 -172352119 + Tigger7 DNA MER2_type 2362 2490 -1 358 228 0 0 chr4 11936548 11936627 -172352035 - L1M4c LINE L1 -4885 1499 1421 3359 154 16 2 chr4 11936732 11937467 -172351195 - L1MA7 LINE L1 -444 5847 5099 3028 180 25 15 chr4 11937511 11937734 -172350928 + L1PA13 LINE L1 1408 1627 -5160 1643 143 110 24 chr4 11937734 11938069 -172350593 + THE1B LTR MaLR 1 364 0 3028 180 25 15 chr4 11938069 11938445 -172350217 + L1PA13 LINE L1 1627 2013 -4774 2348 83 3 3 chr4 11938444 11938756 -172349906 + L1PA5 LINE L1 5685 5996 -158 * 393 314 87 5 chr4 11938856 11939041 -172349621 + MLT1J LTR MaLR 260 459 -52 194 284 45 45 chr4 11939357 11939445 -172349217 + MER5B DNA MER1_type 87 174 -4 213 270 31 119 chr4 11939450 11939609 -172349053 - MIR3 SINE MIR -48 160 16 282 95 0 0 chr4 11940612 11940654 -172348008 + (TCTA)n Simple_repeat Simple_repeat 4 45 0 2565 50 0 0 chr4 11942896 11943193 -172345469 - AluY SINE Alu -9 302 6 444 62 62 0 chr4 11943303 11943368 -172345294 - MER41A LTR ERV1 -88 466 398 473 213 0 46 chr4 11943492 11943600 -172345062 - MER20 DNA MER1_type -4 215 113 216 97 0 0 chr4 11943626 11943657 -172345005 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 689 301 52 43 chr4 11944187 11944749 -172343913 - L1M4 LINE L1 -2828 3816 3250 1090 335 53 60 chr4 11944752 11945276 -172343386 - L2 LINE L2 -256 3057 2542 1783 159 3 32 chr4 11945276 11945590 -172343072 + AluSq SINE Alu 1 305 -8 1090 335 53 60 chr4 11945590 11945885 -172342777 - L2 LINE L2 -771 2542 2246 307 242 23 62 chr4 11946345 11946473 -172342189 + L1ME4a LINE L1 5744 5866 -255 2011 146 7 0 chr4 11946996 11947305 -172341357 + AluSx SINE Alu 1 311 -1 2572 240 141 17 chr4 11947752 11948680 -172339982 - L1M4 LINE L1 -5498 1044 2 687 248 15 84 chr4 11948875 11949145 -172339517 + MLT1G1 LTR MaLR 2 210 -357 4928 187 25 32 chr4 11949150 11950969 -172337693 + L1PA15 LINE L1 4122 5916 -249 1931 116 0 0 chr4 11950969 11951227 -172337435 + AluY SINE Alu 39 296 -15 4928 187 25 32 chr4 11951227 11951476 -172337186 + L1PA15 LINE L1 5916 6165 0 634 231 54 16 chr4 11951537 11951723 -172336939 - L1M4 LINE L1 -1297 4849 4657 2433 64 0 26 chr4 11952273 11952586 -172336076 + AluY SINE Alu 1 305 -6 228 35 0 0 chr4 11952633 11952662 -172336000 + (A)n Simple_repeat Simple_repeat 1 29 0 193 300 0 0 chr4 11953431 11953481 -172335181 - MIR SINE MIR -67 141 92 21 57 0 0 chr4 11953739 11953774 -172334888 + AT_rich Low_complexity Low_complexity 1 35 0 212 324 20 29 chr4 11954137 11954239 -172334423 + MIR SINE MIR 45 145 -63 3012 180 25 4 chr4 11954467 11955027 -172333635 - L1PA16 LINE L1 -9 6157 5586 220 328 41 49 chr4 11955158 11955280 -172333382 - L2 LINE L2 -2 3270 3150 406 235 110 133 chr4 11956158 11956310 -172332352 - Charlie8 DNA MER1_type -1911 506 352 234 0 0 0 chr4 11956310 11956336 -172332326 + (TG)n Simple_repeat Simple_repeat 2 27 0 406 235 110 133 chr4 11956336 11956612 -172332050 - Charlie8 DNA MER1_type -2065 352 88 291 28 0 0 chr4 11956625 11956661 -172332001 + (CA)n Simple_repeat Simple_repeat 1 36 0 204 182 0 0 chr4 11956968 11957012 -172331650 + CT-rich Low_complexity Low_complexity 1 44 0 2047 142 0 3 chr4 11957103 11957405 -172331257 + AluSg SINE Alu 1 301 -9 1451 211 57 72 chr4 11957875 11958388 -172330274 - MLT1D LTR MaLR 0 505 1 5116 258 47 66 chr4 11958889 11960198 -172328464 + L1MB7 LINE L1 6 1272 -5577 2301 82 3 33 chr4 11960198 11960503 -172328159 + AluSp SINE Alu 13 308 -5 5116 258 47 66 chr4 11960503 11961000 -172327662 + L1MB7 LINE L1 1272 1777 -5072 498 187 0 9 chr4 11961003 11961110 -172327552 + L1MB7 LINE L1 1917 2022 -4827 2008 170 26 1 chr4 11961126 11961536 -172327126 + L1MB7 LINE L1 5700 6115 -755 * 2346 335 68 15 chr4 11961535 11962523 -172326139 + L1PBa LINE L1 6 1045 -5818 3215 164 88 87 chr4 11962538 11963528 -172325134 - LTR12 LTR ERV1 -134 1481 3 294 263 0 0 chr4 11963532 11963608 -172325054 + L1PBa LINE L1 1088 1163 -5700 2269 205 78 23 chr4 11963629 11964230 -172324432 + L1MB7 LINE L1 6253 6886 0 1530 174 39 48 chr4 11964735 11965046 -172323616 + AluJb SINE Alu 1 308 -4 26 0 0 0 chr4 11965568 11965594 -172323068 + AT_rich Low_complexity Low_complexity 1 26 0 1521 193 109 3 chr4 11965629 11965984 -172322678 - L1MB7 LINE L1 -1 6168 5785 308 222 51 0 chr4 11965973 11966060 -172322602 + L1MB7 LINE L1 6085 6175 -3 * 4086 230 16 9 chr4 11966315 11967347 -172321315 - L1 LINE L1 -2775 3371 2333 1604 221 19 55 chr4 11967348 11967762 -172320900 - MLT1B LTR MaLR 0 426 2 1899 202 59 51 chr4 11967762 11968301 -172320361 + L1MCa LINE L1 1086 1734 -4692 1577 130 107 4 chr4 11968301 11968563 -172320099 - AluSx SINE Alu -23 289 1 1899 202 59 51 chr4 11968563 11968667 -172319995 + L1MCa LINE L1 1734 1836 -4590 4825 208 16 10 chr4 11968669 11969724 -172318938 + L1 LINE L1 4031 5091 -1055 559 304 146 14 chr4 11969888 11970313 -172318349 + L2 LINE L2 1351 1831 -1483 1431 219 121 38 chr4 11970836 11971634 -172317028 - SATR1 Satellite Satellite -5 864 1 275 178 8 59 chr4 11971812 11971930 -172316732 + (TTA)n Simple_repeat Simple_repeat 1 112 0 27943 107 13 11 chr4 11971985 11976034 -172312628 + HERVE LTR ERV1 1110 5165 -2648 2049 198 103 11 chr4 11976034 11978117 -172310545 - SATR1 Satellite Satellite 0 2274 1 851 225 283 6 chr4 11978147 11978476 -172310186 - SATR1 Satellite Satellite -3 467 48 1386 117 27 31 chr4 11978480 11978703 -172309959 - AluSq SINE Alu -91 222 1 738 223 46 0 chr4 11980595 11980792 -172307870 + MER6B DNA MER2_type 5 210 0 340 207 37 0 chr4 11980897 11980979 -172307683 - MER5B DNA MER1_type -6 172 88 1924 146 0 46 chr4 11981190 11981518 -172307144 - AluSp SINE Alu 0 313 1 1254 223 3 73 chr4 11981704 11981887 -172306775 + L1MA4 LINE L1 5767 5910 -390 1679 164 0 4 chr4 11981887 11982168 -172306494 + AluSx SINE Alu 1 280 -32 1254 223 3 73 chr4 11982168 11982369 -172306293 + L1MA4 LINE L1 5910 6124 -176 2291 96 3 3 chr4 11982455 11982768 -172305894 - AluSp SINE Alu 0 313 1 1862 257 30 9 chr4 11982811 11983807 -172304855 + L1MB3 LINE L1 4814 5831 -352 1828 147 3 20 chr4 11983807 11984107 -172304555 + AluSx SINE Alu 1 295 -17 1738 219 100 23 chr4 11984224 11985023 -172303639 - SATR1 Satellite Satellite -20 860 1 226 205 17 43 chr4 11985082 11985199 -172303463 + (TTA)n Simple_repeat Simple_repeat 1 114 0 311 261 13 26 chr4 11985229 11985382 -172303280 + (TTA)n Simple_repeat Simple_repeat 1 151 0 2105 203 117 9 chr4 11985391 11987504 -172301158 - SATR1 Satellite Satellite -1 2342 1 26415 107 12 13 chr4 11987858 11991700 -172296962 + HERVE LTR ERV1 1108 4945 -2868 1882 185 104 31 chr4 11991706 11992479 -172296183 - SATR1 Satellite Satellite 0 828 1 790 234 280 3 chr4 11992509 11992838 -172295824 - SATR1 Satellite Satellite -3 467 48 1387 128 27 14 chr4 11992842 11993061 -172295601 - AluSq SINE Alu -91 222 1 678 234 46 0 chr4 11994952 11995149 -172293513 + MER6B DNA MER2_type 5 210 0 303 246 97 9 chr4 11995252 11995366 -172293296 - MER5B DNA MER1_type -5 173 50 2015 130 0 40 chr4 11995550 11995874 -172292788 - AluSp SINE Alu -2 311 1 287 322 70 0 chr4 11995879 11996022 -172292640 - HsTC2 DNA Tc2 -113 1785 1633 1231 233 3 72 chr4 11996060 11996243 -172292419 + L1MA4 LINE L1 5767 5910 -390 1627 178 0 4 chr4 11996243 11996524 -172292138 + AluSx SINE Alu 1 280 -32 1231 233 3 72 chr4 11996524 11996731 -172291931 + L1MA4 LINE L1 5910 6130 -170 2126 105 16 3 chr4 11996810 11997114 -172291548 - AluSp SINE Alu -5 308 1 1878 243 25 0 chr4 11997159 11998153 -172290509 + L1MA7 LINE L1 4818 5781 -402 1899 140 3 20 chr4 11998153 11998453 -172290209 + AluSx SINE Alu 1 295 -17 1878 243 25 0 chr4 11998453 11998591 -172290071 + L1MA7 LINE L1 5781 5913 -270 1947 123 35 3 chr4 11998591 11998876 -172289786 + AluSx SINE Alu 2 295 -17 1878 243 25 0 chr4 11998876 11999128 -172289534 + L1MA7 LINE L1 5913 6153 -30 29 0 0 0 chr4 11999148 11999177 -172289485 + AT_rich Low_complexity Low_complexity 1 29 0 3448 213 15 74 chr4 11999639 12000669 -172287993 + LTR5 LTR ERVK 1 969 0 369 346 47 14 chr4 12000994 12001208 -172287454 - MIR SINE MIR -10 252 32 2078 118 0 43 chr4 12001602 12001925 -172286737 + AluSg SINE Alu 1 309 -1 364 202 20 10 chr4 12003049 12003148 -172285514 + L1M4 LINE L1 4623 4722 -1424 297 0 0 0 chr4 12003155 12003188 -172285474 + (TA)n Simple_repeat Simple_repeat 1 33 0 338 284 79 22 chr4 12003190 12003419 -172285243 - L1M4 LINE L1 -3189 2957 2716 430 238 163 44 chr4 12003571 12003953 -172284709 - MLT1J2 LTR MaLR -2 448 1 310 331 31 8 chr4 12003961 12004091 -172284571 - L1M4 LINE L1 -3594 2552 2420 216 315 112 11 chr4 12004167 12004256 -172284406 - MIR3 SINE MIR -54 154 57 4783 124 308 91 chr4 12004367 12005760 -172282902 - pTR5 LTR ERV1 0 2438 743 407 295 248 15 chr4 12007050 12007676 -172280986 + L2 LINE L2 2243 3028 -244 2131 141 7 7 chr4 12007737 12008043 -172280619 - AluSq SINE Alu -7 306 1 311 271 14 17 chr4 12008358 12008460 -172280202 - MER5A DNA MER1_type 0 189 79 * 442 288 169 0 chr4 12008452 12008612 -172280050 + L2 LINE L2 2519 2705 -609 1385 181 36 12 chr4 12008613 12008862 -172279800 - AluJo SINE Alu -16 296 42 378 108 0 0 chr4 12008931 12008996 -172279666 + (TC)n Simple_repeat Simple_repeat 2 66 0 2521 70 3 0 chr4 12009642 12009943 -172278719 + AluY SINE Alu 1 302 -9 2126 136 3 3 chr4 12010179 12010488 -172278174 - AluSc SINE Alu 0 309 1 202 333 17 0 chr4 12010750 12010810 -172277852 + MIR SINE MIR 15 75 -187 2629 239 34 8 chr4 12010815 12011431 -172277231 - ERVL LTR ERVL -3615 2149 1518 466 268 16 0 chr4 12011447 12011570 -172277092 + MIR SINE MIR 99 223 -39 212 319 88 0 chr4 12011660 12011773 -172276889 - L2 LINE L2 -13 3300 3178 328 296 104 70 chr4 12012249 12012692 -172275970 + L2 LINE L2 2804 3261 -11 608 294 16 36 chr4 12014807 12015055 -172273607 + MIR SINE MIR 8 250 -12 1713 175 7 7 chr4 12015138 12015430 -172273232 + AluJb SINE Alu 1 292 -20 637 204 39 100 chr4 12016737 12016968 -172271694 - MER20 DNA MER1_type -2 217 1 383 315 54 22 chr4 12016997 12017181 -172271481 + MIR SINE MIR 41 230 -32 2167 134 3 0 chr4 12017184 12017490 -172271172 - AluSx SINE Alu -5 307 1 242 365 69 0 chr4 12018595 12018798 -172269864 - L2 LINE L2 -943 2371 2155 1471 124 45 0 chr4 12018826 12019028 -172269634 - AluSx SINE Alu -96 216 6 25 31 0 0 chr4 12019038 12019070 -172269592 + AT_rich Low_complexity Low_complexity 1 32 0 219 164 55 0 chr4 12019204 12019259 -172269403 + A-rich Low_complexity Low_complexity 2 59 0 1214 225 23 43 chr4 12019259 12019355 -172269307 + L1MB3 LINE L1 5814 5910 -273 1858 141 35 0 chr4 12019355 12019638 -172269024 + AluSx SINE Alu 3 295 -17 1214 225 23 43 chr4 12019638 12019888 -172268774 + L1MB3 LINE L1 5910 6153 -30 31 0 0 0 chr4 12019908 12019939 -172268723 + AT_rich Low_complexity Low_complexity 1 31 0 3678 206 17 59 chr4 12020397 12021409 -172267253 + LTR5 LTR ERVK 1 969 0 290 379 47 14 chr4 12021735 12021949 -172266713 - MIR SINE MIR -10 252 32 2114 128 0 6 chr4 12022343 12022655 -172266007 + AluSg SINE Alu 1 310 0 224 259 59 52 chr4 12023020 12023155 -172265507 + L2 LINE L2 3137 3272 0 2154 122 0 3 chr4 12023213 12023517 -172265145 - AluY SINE Alu -8 303 1 204 40 0 0 chr4 12024667 12024692 -172263970 + (T)n Simple_repeat Simple_repeat 1 25 0 1003 233 213 44 chr4 12025254 12026663 -172261999 - SATR1 Satellite Satellite -1 1646 1 913 249 255 27 chr4 12026700 12028103 -172260559 - SATR1 Satellite Satellite -94 1722 1 568 241 95 75 chr4 12028206 12028634 -172260028 - SATR1 Satellite Satellite -24 436 1 22 0 0 0 chr4 12028883 12028905 -172259757 + GC_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr4 12028967 12028990 -172259672 + GC_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr4 12030152 12030175 -172258487 + GC_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr4 12030237 12030260 -172258402 + GC_rich Low_complexity Low_complexity 1 23 0 1234 258 106 23 chr4 12030371 12031152 -172257510 - SATR1 Satellite Satellite -3 845 1 21 36 0 0 chr4 12031198 12031226 -172257436 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr4 12031244 12031270 -172257392 + AT_rich Low_complexity Low_complexity 1 26 0 208 229 7 57 chr4 12031335 12031475 -172257187 + (TTA)n Simple_repeat Simple_repeat 1 133 0 27254 106 12 11 chr4 12031503 12035558 -172253104 + HERVE LTR ERV1 1108 5165 -2648 1897 186 115 34 chr4 12035558 12038074 -172250588 - SATR1 Satellite Satellite -144 2718 1 1384 121 27 31 chr4 12038078 12038301 -172250361 - AluSq SINE Alu -91 222 1 625 223 51 5 chr4 12040193 12040390 -172248272 + MER6B DNA MER2_type 5 210 0 421 200 73 80 chr4 12040493 12040643 -172248019 - MER5B DNA MER1_type -5 173 25 2090 128 0 46 chr4 12040786 12041114 -172247548 - AluSp SINE Alu 0 313 1 249 315 70 0 chr4 12041119 12041262 -172247400 - HsTC2 DNA Tc2 -113 1785 1633 1242 246 2 60 chr4 12041300 12041483 -172247179 + L1MA4 LINE L1 5767 5959 -341 1654 183 0 3 chr4 12041483 12041767 -172246895 + AluSx SINE Alu 1 283 -29 1242 246 2 60 chr4 12041767 12042001 -172246661 + L1MA4 LINE L1 5959 6160 -140 2083 128 3 3 chr4 12042051 12042355 -172246307 - AluSp SINE Alu -9 304 1 2804 238 23 51 chr4 12042398 12043394 -172245268 + L1MB3 LINE L1 4814 5837 -346 1833 151 3 28 chr4 12043394 12043713 -172244949 + AluSx SINE Alu 1 311 -1 2804 238 23 51 chr4 12043713 12043841 -172244821 + L1MB3 LINE L1 5837 5967 -216 1760 149 40 0 chr4 12043841 12044116 -172244546 + AluSx SINE Alu 10 295 -17 2804 238 23 51 chr4 12044116 12044368 -172244294 + L1MB3 LINE L1 5967 6153 -30 24 32 0 0 chr4 12044388 12044419 -172244243 + AT_rich Low_complexity Low_complexity 1 31 0 3110 229 17 62 chr4 12044876 12045891 -172242771 + LTR5 LTR ERVK 1 969 0 1763 209 107 37 chr4 12046161 12047323 -172241339 - SATR1 Satellite Satellite -20 1243 1 372 250 12 29 chr4 12047445 12047617 -172241045 + (TTA)n Simple_repeat Simple_repeat 1 169 0 35 24 0 0 chr4 12047669 12047711 -172240951 + AT_rich Low_complexity Low_complexity 1 42 0 1973 221 103 12 chr4 12047711 12048787 -172239875 - SATR1 Satellite Satellite -52 1174 1 181 333 78 31 chr4 12050423 12050552 -172238110 - MIR3 SINE MIR -63 145 11 1847 114 33 13 chr4 12051514 12051813 -172236849 + AluSq SINE Alu 1 305 -8 1940 139 0 13 chr4 12051837 12052153 -172236509 + AluSx SINE Alu 1 312 0 1572 130 32 0 chr4 12052163 12052410 -172236252 + AluJo SINE Alu 1 255 -57 248 303 15 0 chr4 12052495 12052561 -172236101 - MER112 DNA MER1_type -175 85 19 2282 102 0 6 chr4 12055728 12056043 -172232619 - AluSq SINE Alu 0 313 1 629 237 28 90 chr4 12056110 12056200 -172232462 + L1MEd LINE L1 23 117 -6002 2045 108 11 0 chr4 12056200 12056486 -172232176 + AluSq SINE Alu 1 289 -24 243 0 0 0 chr4 12056491 12056518 -172232144 + (TAAAA)n Simple_repeat Simple_repeat 3 29 0 629 237 28 90 chr4 12056518 12056632 -172232030 + L1MEd LINE L1 121 220 -5899 1107 267 58 47 chr4 12056693 12056930 -172231732 + L1MEd LINE L1 329 575 -5544 2003 111 17 3 chr4 12056930 12057219 -172231443 + AluSq SINE Alu 1 293 -20 1107 267 58 47 chr4 12057219 12057426 -172231236 + L1MEd LINE L1 575 778 -5341 382 285 0 24 chr4 12057473 12057596 -172231066 + MLT1E LTR MaLR 1 120 -473 508 28 14 14 chr4 12057598 12057669 -172230993 + (TTTTA)n Simple_repeat Simple_repeat 3 73 0 585 259 0 0 chr4 12057669 12057785 -172230877 - FLAM_C SINE Alu -26 117 2 2163 83 21 0 chr4 12057795 12058084 -172230578 - AluSx SINE Alu -17 295 1 276 235 128 5 chr4 12058092 12058251 -172230411 + MLT1E3 LTR MaLR 12 262 -392 303 218 110 0 chr4 12058304 12058397 -172230265 + MLT1E3 LTR MaLR 290 397 -227 363 216 117 47 chr4 12058401 12058572 -172230090 - SATR1 Satellite Satellite -131 339 157 1854 138 7 13 chr4 12058861 12059165 -172229497 + AluSx SINE Alu 3 304 -8 25 0 0 0 chr4 12059175 12059200 -172229462 + AT_rich Low_complexity Low_complexity 1 25 0 2578 121 54 64 chr4 12059235 12059577 -172229085 - L1MA8 LINE L1 -3 6288 5951 1793 161 10 3 chr4 12059577 12059887 -172228775 - AluJo SINE Alu 0 312 1 2578 121 54 64 chr4 12059887 12060063 -172228599 - L1MA8 LINE L1 -340 5951 5775 1073 202 14 23 chr4 12060452 12060670 -172227992 + MER58A DNA MER1_type 9 224 0 2026 137 13 0 chr4 12061612 12061918 -172226744 + AluSx SINE Alu 1 310 -2 344 273 65 65 chr4 12062100 12062254 -172226408 + MIR SINE MIR 101 254 -8 659 203 6 55 chr4 12062792 12062974 -172225688 - MER53 DNA DNA -3 186 14 2126 111 13 7 chr4 12063685 12063992 -172224670 - AluSq SINE Alu -4 309 1 267 200 67 32 chr4 12064335 12064456 -172224206 + L2 LINE L2 2921 3047 -266 338 288 136 0 chr4 12064686 12064811 -172223851 - MIR SINE MIR -115 147 6 1341 146 36 0 chr4 12066114 12066333 -172222329 + AluSg SINE Alu 1 227 -83 446 178 10 30 chr4 12066412 12066513 -172222149 + AluSg SINE Alu 207 305 -4 2183 67 14 0 chr4 12066601 12066884 -172221778 - L1PA8 LINE L1 0 6172 5886 262 378 27 5 chr4 12067064 12067249 -172221413 - L1MC/D LINE L1 -2009 5799 5611 573 237 0 0 chr4 12067492 12067729 -172220933 + (TCCA)n Simple_repeat Simple_repeat 1 237 0 198 312 0 65 chr4 12067743 12067820 -172220842 - L2 LINE L2 -1 3312 3241 * 551 261 92 11 chr4 12067802 12067986 -172220676 + MIR SINE MIR 12 210 -52 181 368 43 17 chr4 12068111 12068228 -172220434 - L2 LINE L2 -163 3109 2990 1886 141 3 0 chr4 12068655 12068946 -172219716 + AluSx SINE Alu 11 302 -10 248 261 167 3 chr4 12069303 12069414 -172219248 + MIR3 SINE MIR 32 159 -49 215 176 20 59 chr4 12069517 12069568 -172219094 + MER5A DNA MER1_type 119 167 -22 187 114 86 0 chr4 12069537 12069572 -172219090 - MER5B DNA MER1_type -124 54 17 * 1627 162 22 11 chr4 12069862 12070164 -172218498 - AluJb SINE Alu 0 305 1 360 235 125 61 chr4 12070166 12070541 -172218121 - L1MC5 LINE L1 -28 7933 7535 1962 119 14 7 chr4 12070610 12070903 -172217759 + AluSc SINE Alu 1 295 -14 359 241 63 57 chr4 12071198 12071356 -172217306 - MER5B DNA MER1_type -3 175 17 187 366 14 0 chr4 12071444 12071515 -172217147 + L2 LINE L2 3106 3177 -95 1941 131 3 17 chr4 12071903 12072201 -172216461 + AluSx SINE Alu 1 294 -18 1727 136 4 4 chr4 12072792 12073056 -172215606 + AluSx SINE Alu 1 264 -48 786 195 168 27 chr4 12073128 12073462 -172215200 - HAL1b LINE L1 -28 1320 940 946 269 117 11 chr4 12073965 12074419 -172214243 - HAL1b LINE L1 -415 933 432 2211 92 0 16 chr4 12074426 12074741 -172213921 - AluY SINE Alu -1 310 1 241 293 49 0 chr4 12075013 12075095 -172213567 - L2 LINE L2 -220 3052 2967 1214 194 24 81 chr4 12075112 12075569 -172213093 + MLT2B1 LTR ERVL 5 414 0 565 89 0 0 chr4 12076146 12076225 -172212437 + MADE1 DNA Mariner 2 80 0 656 360 13 10 chr4 12077572 12077875 -172210787 + MLT1I LTR MaLR 103 406 -3 317 61 0 20 chr4 12077889 12077938 -172210724 + (TG)n Simple_repeat Simple_repeat 1 48 0 21 0 0 0 chr4 12078007 12078028 -172210634 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr4 12078957 12078977 -172209685 + (A)n Simple_repeat Simple_repeat 1 20 0 318 243 111 86 chr4 12079046 12079101 -172209561 + L1ME3A LINE L1 5874 5926 -244 751 234 18 31 chr4 12079101 12079323 -172209339 - MER20 DNA MER1_type 0 219 1 318 243 111 86 chr4 12079323 12079469 -172209193 + L1ME3A LINE L1 5926 6086 -84 1643 150 0 39 chr4 12079469 12079801 -172208861 - AluJb SINE Alu 0 312 1 318 243 111 86 chr4 12079801 12079878 -172208784 + L1ME3A LINE L1 6086 6160 -10 2006 139 7 0 chr4 12080237 12080532 -172208130 - AluSx SINE Alu -15 297 1 1055 147 0 0 chr4 12080673 12080836 -172207826 + AluSg/x SINE Alu 130 292 -20 1697 176 9 11 chr4 12081490 12081653 -172207009 - L1M4 LINE L1 -521 5653 5494 2064 116 0 7 chr4 12081653 12081955 -172206707 - AluSx SINE Alu -12 300 1 1697 176 9 11 chr4 12081955 12082119 -172206543 - L1M4 LINE L1 -680 5494 5331 944 274 133 33 chr4 12082119 12082539 -172206123 + L1ME1 LINE L1 5652 6113 -53 833 169 0 0 chr4 12082612 12082748 -172205914 + FLAM_C SINE Alu 2 137 -6 1048 93 0 0 chr4 12082752 12082891 -172205771 + AluSx SINE Alu 1 139 -173 1179 125 16 0 chr4 12083760 12083944 -172204718 + AluSx SINE Alu 121 307 -5 837 151 0 20 chr4 12083950 12084096 -172204566 + FRAM SINE Alu 4 146 -30 387 127 0 0 chr4 12084100 12084163 -172204499 + (CA)n Simple_repeat Simple_repeat 2 64 0 187 314 0 0 chr4 12084164 12084215 -172204447 - MER5A DNA MER1_type -53 136 86 263 227 174 38 chr4 12084341 12084473 -172204189 - MIR SINE MIR -20 242 93 2679 152 13 20 chr4 12084473 12084921 -172203741 - L1MA7 LINE L1 -232 6059 5615 997 167 88 0 chr4 12084916 12085132 -172203530 + L1MA7 LINE L1 6051 6285 -6 * 210 247 34 79 chr4 12085150 12085239 -172203423 - MIR SINE MIR -156 106 22 269 226 19 142 chr4 12086076 12086182 -172202480 - L2 LINE L2 -7 3265 3173 2910 206 21 77 chr4 12087056 12088082 -172200580 - LTR5 LTR ERVK 0 969 1 1098 185 0 0 chr4 12088084 12088262 -172200400 - HERVK LTR ERVK -2 7241 7064 379 273 13 26 chr4 12088347 12088501 -172200161 + CT-rich Low_complexity Low_complexity 1 152 0 2600 102 11 0 chr4 12088603 12088967 -172199695 - HERVK LTR ERVK -1720 5523 5156 1020 132 29 0 chr4 12089369 12089543 -172199119 - L1MA4 LINE L1 -12 6288 6110 5399 168 35 2 chr4 12089551 12090702 -172197960 + L1PB1 LINE L1 4295 5523 -628 2142 116 0 0 chr4 12090702 12091012 -172197650 + AluSg SINE Alu 1 310 0 5399 168 35 2 chr4 12091012 12091663 -172196999 + L1PB1 LINE L1 5523 6151 0 777 164 120 4 chr4 12091666 12091887 -172196775 - L1MA4 LINE L1 -172 6132 5880 3648 133 14 0 chr4 12091934 12092519 -172196143 - L1MA4A LINE L1 -376 5927 5335 1230 180 4 4 chr4 12092508 12092753 -172195909 - L1P LINE L1 -942 5204 4960 * 9882 212 24 41 chr4 12092754 12093201 -172195461 - L1 LINE L1 -940 5908 5455 243 0 0 0 chr4 12093201 12093228 -172195434 + (TA)n Simple_repeat Simple_repeat 2 28 0 1877 117 0 51 chr4 12093228 12093544 -172195118 - AluY SINE Alu -11 300 1 9882 212 24 41 chr4 12093544 12094028 -172194634 - L1 LINE L1 -1392 5456 4965 431 95 0 40 chr4 12094028 12094102 -172194560 - AluSq SINE Alu -1 311 241 1123 127 30 0 chr4 12094103 12094268 -172194394 - AluSq SINE Alu -143 170 1 9882 212 24 41 chr4 12094268 12096460 -172192202 - L1 LINE L1 -1883 4965 2737 2100 139 51 20 chr4 12096460 12096813 -172191849 + THE1B LTR MaLR 1 364 0 11037 111 16 11 chr4 12096813 12098385 -172190277 + THE1B-int LTR MaLR 1 1580 0 2150 128 48 31 chr4 12098385 12098743 -172189919 + THE1B LTR MaLR 1 364 0 9882 212 24 41 chr4 12098743 12098993 -172189669 - L1 LINE L1 -4108 2740 2521 183 42 0 0 chr4 12098994 12099018 -172189644 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 834 189 0 0 chr4 12099021 12099164 -172189498 - FRAM SINE Alu -33 143 1 5888 211 59 18 chr4 12099164 12100215 -172188447 - L1 LINE L1 -4327 2522 1425 1954 126 4 0 chr4 12100215 12100524 -172188138 - AluSg SINE Alu 0 310 1 5888 211 59 18 chr4 12100524 12100936 -172187726 - L1 LINE L1 -5424 1425 1032 847 275 14 5 chr4 12101153 12101371 -172187291 - MER58A DNA MER1_type -1 223 4 1344 218 7 4 chr4 12101485 12101760 -172186902 + AluJo SINE Alu 1 276 -36 438 167 39 98 chr4 12101962 12102064 -172186598 - MLT1H LTR MaLR 0 549 454 * 726 257 112 51 chr4 12102062 12102393 -172186269 - MLT1H LTR MaLR -198 351 1 207 139 0 0 chr4 12103090 12103126 -172185536 + (T)n Simple_repeat Simple_repeat 1 36 0 1909 123 10 7 chr4 12103327 12103628 -172185034 + AluSc SINE Alu 1 302 -7 645 248 39 9 chr4 12103897 12104127 -172184535 + Charlie5 DNA MER1_type 2334 2570 -42 1939 179 43 0 chr4 12104296 12104665 -172183997 + L1MB7 LINE L1 5575 5959 -219 1119 104 75 0 chr4 12104665 12104838 -172183824 + AluSg/x SINE Alu 104 289 -23 975 206 34 0 chr4 12104841 12105045 -172183617 + L1MB7 LINE L1 5974 6184 0 404 302 43 71 chr4 12105045 12105197 -172183465 - L2 LINE L2 -221 3051 2907 1950 141 0 0 chr4 12105197 12105495 -172183167 - AluSq SINE Alu -15 298 1 404 302 43 71 chr4 12105495 12105597 -172183065 - L2 LINE L2 -365 2907 2804 208 300 0 0 chr4 12105638 12105698 -172182964 + MIR SINE MIR 89 148 -60 2211 59 16 7 chr4 12105753 12106056 -172182606 - AluY SINE Alu -5 306 1 549 281 55 33 chr4 12106096 12106370 -172182292 - L2 LINE L2 -577 2737 2458 2035 123 0 3 chr4 12107127 12107428 -172181234 - AluSc SINE Alu -9 300 1 1356 148 19 5 chr4 12107546 12107762 -172180900 + AluSx SINE Alu 2 220 -92 373 211 39 29 chr4 12108019 12108123 -172180539 - L1M4 LINE L1 -391 5793 5689 * 1158 194 25 60 chr4 12108098 12108381 -172180281 + L1MB5 LINE L1 5902 6174 0 1937 150 0 0 chr4 12108385 12108685 -172179977 + AluSx SINE Alu 2 301 -11 618 198 8 24 chr4 12108700 12108826 -172179836 - MER5B DNA MER1_type -50 128 5 264 324 22 55 chr4 12108913 12109095 -172179567 + MER5A DNA MER1_type 3 178 -11 2068 122 16 0 chr4 12109188 12109492 -172179170 + AluSx SINE Alu 1 309 -3 1962 201 128 11 chr4 12109779 12110231 -172178431 - MLT1E LTR MaLR 0 593 89 7889 45 0 0 chr4 12110231 12111203 -172177459 - L1P LINE L1 -896 5250 4279 629 163 16 16 chr4 12111231 12111354 -172177308 + LTR2B LTR ERV1 272 394 -96 1109 112 0 25 chr4 12111359 12111520 -172177142 - AluSc SINE Alu -152 157 1 1567 207 207 51 chr4 12111665 12112231 -172176431 + MLT1E1 LTR MaLR 1 654 0 2061 111 0 16 chr4 12112242 12112548 -172176114 + AluSc SINE Alu 1 301 -8 229 360 41 18 chr4 12112603 12112750 -172175912 - MIR3 SINE MIR -54 154 46 2093 102 0 0 chr4 12112923 12113207 -172175455 + AluSc SINE Alu 1 284 -25 449 321 6 37 chr4 12113274 12113436 -172175226 - MIR SINE MIR -105 157 1 1882 140 3 3 chr4 12113487 12113780 -172174882 + AluSx SINE Alu 1 293 -19 714 257 43 77 chr4 12113944 12114200 -172174462 + MLT1I LTR MaLR 87 331 -78 1835 143 24 3 chr4 12114200 12114493 -172174169 + AluSx SINE Alu 1 299 -13 714 257 43 77 chr4 12114493 12114563 -172174099 + MLT1I LTR MaLR 331 402 -7 494 288 7 22 chr4 12114911 12115050 -172173612 - L2 LINE L2 0 3272 3136 6176 62 140 59 chr4 12115077 12116158 -172172504 - MER11A LTR ERVK 0 1266 1 890 307 98 43 chr4 12116167 12116859 -172171803 - L2 LINE L2 -212 3101 2345 1524 159 0 55 chr4 12116859 12117168 -172171494 - AluJo SINE Alu -20 292 1 890 307 98 43 chr4 12117168 12117402 -172171260 - L2 LINE L2 -968 2345 2125 210 362 17 75 chr4 12118036 12118210 -172170452 + L3 LINE CR1 1033 1196 -381 871 126 0 0 chr4 12118232 12118359 -172170303 + AluSq/x SINE Alu 9 135 -177 1991 135 10 3 chr4 12118359 12118662 -172170000 + AluSq SINE Alu 1 305 -8 1176 182 4 48 chr4 12118702 12118819 -172169843 + MER58A DNA MER1_type 1 105 -2315 2109 151 135 0 chr4 12118819 12119196 -172169466 - MSTA LTR MaLR 0 428 1 1176 182 4 48 chr4 12119196 12119309 -172169353 + MER58A DNA MER1_type 105 221 -3 208 175 25 0 chr4 12119319 12119359 -172169303 + GA-rich Low_complexity Low_complexity 3 43 0 227 316 96 7 chr4 12119363 12119499 -172169163 + L3 LINE CR1 1230 1377 -200 4306 84 2 2 chr4 12119506 12120064 -172168598 + LTR6B LTR ERV1 1 558 0 21949 138 21 6 chr4 12120066 12123252 -172165410 + HERVS71 LTR ERV1 4 3236 -5742 13913 143 18 0 chr4 12123261 12126070 -172162592 + HERVS71 LTR ERV1 4870 7795 -1183 2180 105 13 3 chr4 12126059 12126372 -172162290 + HERVS71 LTR ERV1 8594 8909 -69 * 4355 62 16 0 chr4 12126372 12126921 -172161741 + LTR6B LTR ERV1 1 558 0 2140 86 7 0 chr4 12127176 12127468 -172161194 - AluSp SINE Alu -14 299 6 288 257 110 58 chr4 12128086 12128327 -172160335 - MLT1H LTR MaLR 0 595 248 1851 100 17 79 chr4 12128454 12128814 -172159848 - MER4A LTR ERV1 -6 658 263 446 121 0 15 chr4 12128814 12128880 -172159782 - MER4A LTR ERV1 -566 98 34 1628 126 0 33 chr4 12128881 12129152 -172159510 - AluSx SINE Alu -22 290 29 610 78 0 0 chr4 12129152 12129229 -172159433 - AluS SINE Alu -235 78 2 309 116 0 0 chr4 12129230 12129273 -172159389 - MER4A LTR ERV1 -620 44 2 442 270 110 6 chr4 12129273 12129436 -172159226 - MLT1H LTR MaLR -356 193 14 279 0 0 0 chr4 12129441 12129472 -172159190 + (CA)n Simple_repeat Simple_repeat 1 31 0 1761 87 146 0 chr4 12129753 12130007 -172158655 - AluSg SINE Alu -5 295 5 380 260 47 89 chr4 12130201 12130459 -172158203 + MLT1K LTR MaLR 180 426 -162 1802 146 30 0 chr4 12130582 12130883 -172157779 + AluSg SINE Alu 1 310 0 1134 299 23 0 chr4 12130885 12131189 -172157473 + LTR16C LTR ERVL 164 474 -17 585 122 0 5 chr4 12131700 12131890 -172156772 + AluSx SINE Alu 2 276 -36 595 188 70 26 chr4 12132672 12132828 -172155834 - MLT1I LTR MaLR -7 424 267 241 284 95 24 chr4 12133042 12133192 -172155470 - MIR SINE MIR -45 163 3 331 240 11 42 chr4 12133576 12133698 -172154964 - MER58 DNA MER1_type 0 2420 102 1474 200 37 31 chr4 12133707 12134057 -172154605 + L1MB5 LINE L1 5813 6164 -20 1329 220 14 0 chr4 12134057 12134352 -172154310 - AluJo SINE Alu -12 300 2 1823 133 3 42 chr4 12134521 12134830 -172153832 - AluJb SINE Alu -11 301 5 329 40 40 0 chr4 12134989 12135039 -172153623 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 2019 124 0 0 chr4 12135041 12135323 -172153339 - AluSx SINE Alu -30 282 1 593 206 38 0 chr4 12135330 12135461 -172153201 - L1MB4 LINE L1 0 6180 6045 186 43 0 0 chr4 12135638 12135661 -172153001 + (CTG)n Simple_repeat Simple_repeat 3 25 0 1130 186 25 39 chr4 12135979 12136259 -172152403 - AluJo SINE Alu -36 276 1 1770 172 0 7 chr4 12136290 12136598 -172152064 + AluSx SINE Alu 7 312 0 385 332 65 13 chr4 12136666 12136898 -172151764 + L2 LINE L2 2710 2953 -361 293 248 70 104 chr4 12136897 12137181 -172151481 - L2 LINE L2 -91 3181 2910 * 1644 115 0 0 chr4 12137287 12137513 -172151149 + L1P LINE L1 1 226 -5920 841 100 0 9 chr4 12187513 12187650 -172101012 + AluSp/q SINE Alu 177 312 0 858 129 0 43 chr4 12189367 12189506 -172099156 - FLAM_C SINE Alu 0 133 1 886 164 6 73 chr4 12189536 12189701 -172098961 + FRAM SINE Alu 1 153 -23 2435 66 16 7 chr4 12189711 12190015 -172098647 + AluSp SINE Alu 2 308 -5 679 150 17 0 chr4 12190396 12190516 -172098146 - MSTA LTR MaLR -306 122 1 3586 205 23 29 chr4 12190516 12190710 -172097952 - MER21-int LTR ERV1 -919 3272 3078 1955 104 80 7 chr4 12190710 12190997 -172097665 - AluSx SINE Alu -4 308 1 3586 205 23 29 chr4 12190997 12191217 -172097445 - MER21-int LTR ERV1 -1113 3078 2858 2017 113 46 0 chr4 12191217 12191501 -172097161 - AluSp SINE Alu -15 298 2 3586 205 23 29 chr4 12191501 12191872 -172096790 - MER21-int LTR ERV1 -1333 2858 2491 1672 181 7 7 chr4 12192131 12192434 -172096228 - MER21-int LTR ERV1 -1711 2480 2178 2413 106 0 3 chr4 12192438 12192749 -172095913 - AluSq SINE Alu -3 310 1 934 175 5 31 chr4 12192751 12192945 -172095717 - MLT1D LTR MaLR -316 189 1 223 250 115 83 chr4 12192973 12192991 -172095671 + L2 LINE L2 1797 1813 -1501 2319 129 3 0 chr4 12192991 12193301 -172095361 - AluSp SINE Alu -2 311 1 223 250 115 83 chr4 12193301 12193438 -172095224 + L2 LINE L2 1813 1957 -1357 348 221 78 52 chr4 12193698 12193852 -172094810 - L1ME3A LINE L1 -44 6126 5969 282 158 0 0 chr4 12193876 12193933 -172094729 - L1MC1 LINE L1 -1 6332 6276 1200 118 0 24 chr4 12193933 12194103 -172094559 + AluSg SINE Alu 1 166 -144 1340 169 4 0 chr4 12194206 12194443 -172094219 - L1MC1 LINE L1 -313 6020 5783 2003 153 0 3 chr4 12194452 12194777 -172093885 - AluSx SINE Alu 0 312 1 345 250 164 8 chr4 12195103 12195231 -172093431 - MLT1J2 LTR MaLR -51 399 252 2631 91 100 5 chr4 12195920 12196329 -172092333 - LTR7 LTR ERV1 -2 448 1 1213 189 121 33 chr4 12196782 12197157 -172091505 - MLT1C LTR MaLR 0 505 59 * 2234 204 40 32 chr4 12197147 12197164 -172091498 - LTR1 LTR ERV1 -281 504 489 6341 125 11 10 chr4 12197164 12198082 -172090580 - LTR5 LTR ERVK 0 969 51 2234 204 40 32 chr4 12198082 12198564 -172090098 - LTR1 LTR ERV1 -296 489 1 1451 132 4 66 chr4 12199446 12199689 -172088973 + AluSg/x SINE Alu 71 298 -12 907 147 47 32 chr4 12199696 12199886 -172088776 + MSTB LTR MaLR 196 388 -38 260 86 0 0 chr4 12199885 12199920 -172088742 + U2 snRNA snRNA 1 35 -153 * 364 109 0 0 chr4 12199918 12199973 -172088689 + MSTB LTR MaLR 374 428 0 605 175 22 36 chr4 12199973 12200110 -172088552 + MER21-int LTR ERV1 3268 3402 -789 2311 114 0 0 chr4 12200110 12200407 -172088255 - AluSg SINE Alu -13 297 1 2304 118 0 9 chr4 12201930 12202245 -172086417 - AluSx SINE Alu 0 312 1 719 274 58 0 chr4 12202457 12202680 -172085982 - MER82 DNA MER2_type 0 653 418 2136 112 38 0 chr4 12202681 12202968 -172085694 - AluSx SINE Alu -14 298 1 323 157 112 34 chr4 12204589 12204641 -172084021 - MLT2A2 LTR ERVL 0 453 407 267 31 0 0 chr4 12204641 12204673 -172083989 + (TA)n Simple_repeat Simple_repeat 2 33 0 323 157 112 34 chr4 12204673 12204709 -172083953 - MLT2A2 LTR ERVL -46 407 358 237 132 0 0 chr4 12204708 12204746 -172083916 + MLT2A1 LTR ERVL 349 386 -58 * 243 0 0 0 chr4 12204749 12204776 -172083886 + (TG)n Simple_repeat Simple_repeat 2 28 0 181 323 39 55 chr4 12204821 12204832 -172083830 - L2 LINE L2 -77 3236 3226 2078 128 3 7 chr4 12204832 12205130 -172083532 + AluSg SINE Alu 1 297 -13 181 323 39 55 chr4 12205130 12205245 -172083417 - L2 LINE L2 -87 3226 3112 202 283 0 0 chr4 12205427 12205480 -172083182 + MIR SINE MIR 203 255 -7 465 19 0 0 chr4 12206848 12206902 -172081760 + (TA)n Simple_repeat Simple_repeat 2 55 0 747 121 0 0 chr4 12206902 12207001 -172081661 - AluSx SINE Alu -18 294 196 1205 68 7 7 chr4 12207002 12207148 -172081514 - AluSx SINE Alu -167 146 1 1262 193 42 87 chr4 12207154 12207515 -172081147 - L1MB7 LINE L1 -9 6175 5834 2067 127 3 7 chr4 12207515 12207806 -172080856 - AluSx SINE Alu -17 295 6 1262 193 42 87 chr4 12207806 12207870 -172080792 - L1MB7 LINE L1 -350 5834 5769 724 208 6 6 chr4 12208732 12208910 -172079752 + CT-rich Low_complexity Low_complexity 1 178 0 2040 137 20 3 chr4 12208910 12209216 -172079446 - AluSq SINE Alu -2 311 1 23 33 0 0 chr4 12209595 12209625 -172079037 + AT_rich Low_complexity Low_complexity 1 30 0 785 196 0 0 chr4 12209628 12209761 -172078901 - FLAM_C SINE Alu 0 133 1 762 113 9 0 chr4 12210147 12210262 -172078400 - THE1B LTR MaLR -248 116 1 776 262 29 57 chr4 12210667 12210946 -172077716 - MLT1A2 LTR MaLR -17 357 87 319 313 67 8 chr4 12210968 12211102 -172077560 - MIR SINE MIR -73 189 48 356 345 20 14 chr4 12211250 12211398 -172077264 + L2 LINE L2 3165 3313 0 570 260 0 0 chr4 12212442 12212790 -172075872 + (TG)n Simple_repeat Simple_repeat 1 348 0 543 255 0 0 chr4 12212859 12213128 -172075534 + (TG)n Simple_repeat Simple_repeat 1 269 0 194 267 67 33 chr4 12214237 12214297 -172074365 + MIR3 SINE MIR 146 207 -1 523 328 114 45 chr4 12214606 12215071 -172073591 - L2 LINE L2 -1 3271 2765 429 54 32 172 chr4 12215071 12215110 -172073552 + MADE1 DNA Mariner 1 21 -59 2003 136 13 20 chr4 12215110 12215412 -172073250 - AluSx SINE Alu -12 300 1 429 54 32 172 chr4 12215412 12215465 -172073197 + MADE1 DNA Mariner 21 80 0 523 328 114 45 chr4 12215465 12215545 -172073117 - L2 LINE L2 -507 2765 2692 466 244 8 17 chr4 12215567 12215686 -172072976 + MER58B DNA MER1_type 210 327 -14 1631 186 3 21 chr4 12215873 12216158 -172072504 + AluJo SINE Alu 3 282 -30 294 87 0 0 chr4 12216158 12216204 -172072458 + (TC)n Simple_repeat Simple_repeat 1 46 0 378 0 0 0 chr4 12216205 12216247 -172072415 + (TA)n Simple_repeat Simple_repeat 2 43 0 1175 231 15 45 chr4 12216288 12216310 -172072352 + L1MB3 LINE L1 5794 5815 -368 1931 141 7 0 chr4 12216310 12216587 -172072075 + AluSx SINE Alu 1 279 -33 252 111 0 0 chr4 12216594 12216639 -172072023 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 1175 231 15 45 chr4 12216639 12216733 -172071929 + L1MB3 LINE L1 5821 5916 -267 2000 141 7 0 chr4 12216733 12217024 -172071638 + AluSx SINE Alu 3 295 -17 1175 231 15 45 chr4 12217024 12217276 -172071386 + L1MB3 LINE L1 5916 6153 -30 30 0 0 0 chr4 12217296 12217326 -172071336 + AT_rich Low_complexity Low_complexity 1 30 0 3460 211 21 64 chr4 12217788 12218801 -172069861 + LTR5 LTR ERVK 1 969 0 212 158 0 0 chr4 12219070 12219108 -172069554 + (ATG)n Simple_repeat Simple_repeat 3 40 0 289 354 51 23 chr4 12219127 12219342 -172069320 - MIR SINE MIR -10 252 32 2107 123 0 7 chr4 12219736 12220046 -172068616 + AluSg SINE Alu 1 308 -2 211 306 63 27 chr4 12220433 12220544 -172068118 + L2 LINE L2 3158 3272 0 1792 154 0 20 chr4 12220609 12220914 -172067748 - AluSc SINE Alu -10 299 1 778 237 280 15 chr4 12222626 12224839 -172063823 - SATR1 Satellite Satellite -6 2800 1 1574 225 100 37 chr4 12225032 12226668 -172061994 - SATR1 Satellite Satellite -20 1739 1 25 95 0 0 chr4 12226780 12226854 -172061808 + AT_rich Low_complexity Low_complexity 1 74 0 386 216 5 63 chr4 12226904 12227094 -172061568 + (TTA)n Simple_repeat Simple_repeat 2 180 0 18118 99 14 6 chr4 12227185 12229851 -172058811 + HERVE LTR ERV1 1108 3795 -4018 360 257 176 0 chr4 12230388 12230431 -172058231 + MER58C DNA MER1_type 56 90 -2330 234 0 0 0 chr4 12230431 12230457 -172058205 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 396 0 0 0 chr4 12230456 12230500 -172058162 + (CA)n Simple_repeat Simple_repeat 1 44 0 360 257 176 0 chr4 12230457 12230592 -172058070 + MER58C DNA MER1_type 90 215 0 678 301 98 3 chr4 12230593 12230907 -172057755 + MLT1L LTR MaLR 218 561 -54 853 214 75 15 chr4 12230907 12231108 -172057554 - MER58A DNA MER1_type 0 224 12 1352 216 131 45 chr4 12232151 12232600 -172056062 + MLT1D LTR MaLR 1 488 -17 2837 106 48 9 chr4 12232662 12232982 -172055680 + L1MA2 LINE L1 5846 6189 -115 1801 94 123 29 chr4 12232982 12233258 -172055404 + AluY SINE Alu 2 303 -8 2837 106 48 9 chr4 12233258 12233373 -172055289 + L1MA2 LINE L1 6189 6298 -6 329 290 195 30 chr4 12233553 12233922 -172054740 + L2 LINE L2 2015 2444 -870 2941 162 133 11 chr4 12233957 12234587 -172054075 + MER39 LTR ERV1 1 707 0 706 279 80 78 chr4 12234588 12235298 -172053364 + L2 LINE L2 2487 3213 -59 1698 170 38 10 chr4 12235358 12235646 -172053016 - AluJb SINE Alu -16 296 1 189 0 0 0 chr4 12235716 12235737 -172052925 + (A)n Simple_repeat Simple_repeat 1 21 0 741 271 112 77 chr4 12236071 12236653 -172052009 + MLT1L LTR MaLR 1 602 -13 3471 216 111 45 chr4 12236658 12237849 -172050813 - L1MC4 LINE L1 -3 8039 6770 257 279 81 22 chr4 12238110 12238246 -172050416 - MLT1J2 LTR MaLR -240 210 67 210 331 71 76 chr4 12238578 12239040 -172049622 - L2 LINE L2 -339 2975 2516 891 26 0 17 chr4 12239558 12239674 -172048988 - L1HS LINE L1 0 6155 6042 456 223 54 0 chr4 12239674 12239786 -172048876 - MIR SINE MIR -125 137 20 2055 117 13 17 chr4 12240728 12241028 -172047634 - AluSx SINE Alu -13 299 1 377 281 96 0 chr4 12241092 12241227 -172047435 + L2 LINE L2 2898 3045 -227 265 314 20 0 chr4 12241296 12241398 -172047264 - MLT1K LTR MaLR 0 588 485 282 269 22 0 chr4 12241432 12241566 -172047096 + CT-rich Low_complexity Low_complexity 2 138 0 533 255 43 70 chr4 12241844 12242154 -172046508 - MLT1G3 LTR MaLR -177 378 59 2299 134 97 35 chr4 12242186 12242589 -172046073 + MSTA LTR MaLR 1 428 0 339 274 89 13 chr4 12242672 12242829 -172045833 - MLT1J2 LTR MaLR -229 221 53 196 270 104 35 chr4 12243606 12243721 -172044941 + L2 LINE L2 2824 2946 -326 367 276 92 29 chr4 12243780 12243954 -172044708 + L2 LINE L2 3095 3279 -34 407 155 0 0 chr4 12244028 12244099 -172044563 - AluS SINE Alu -11 301 231 306 314 96 78 chr4 12244371 12244642 -172044020 - L2 LINE L2 -1 3271 2996 606 63 0 0 chr4 12244772 12244851 -172043811 + (TTCC)n Simple_repeat Simple_repeat 2 80 0 1879 125 0 45 chr4 12244865 12245154 -172043508 - AluSx SINE Alu -36 276 1 1510 143 198 0 chr4 12245542 12245800 -172042862 - AluSg1 SINE Alu 0 309 1 406 224 12 0 chr4 12245823 12245908 -172042754 - MIR SINE MIR -106 156 71 2511 74 0 0 chr4 12246151 12246448 -172042214 - AluY SINE Alu -14 297 1 285 29 0 0 chr4 12246473 12246507 -172042155 + (TC)n Simple_repeat Simple_repeat 1 34 0 210 333 13 0 chr4 12246507 12246582 -172042080 + L2 LINE L2 3197 3272 0 204 269 15 30 chr4 12246636 12246703 -172041959 - L2 LINE L2 -268 3004 2939 223 345 61 14 chr4 12247077 12247225 -172041437 - L2 LINE L2 -830 2484 2330 221 372 78 0 chr4 12247888 12248017 -172040645 - MIR SINE MIR -77 185 47 328 220 44 55 chr4 12251611 12251702 -172036960 + L2 LINE L2 3222 3311 -2 348 259 0 74 chr4 12251870 12251978 -172036684 + MIR3 SINE MIR 61 160 -48 671 312 71 67 chr4 12252418 12252854 -172035808 - L2 LINE L2 -33 3280 2843 804 269 27 0 chr4 12252921 12253107 -172035555 - MIR SINE MIR -59 203 13 380 258 80 49 chr4 12253332 12253495 -172035167 - MIR SINE MIR -48 214 47 794 176 118 43 chr4 12253496 12253683 -172034979 + MER20 DNA MER1_type 1 201 -18 295 308 110 2 chr4 12253756 12253862 -172034800 + MIR SINE MIR 31 145 -63 531 207 44 68 chr4 12253942 12254074 -172034588 - MLT1F1 LTR MaLR -421 146 13 605 203 153 21 chr4 12254099 12254915 -172033747 - L1MC4 LINE L1 -3 8039 7046 1768 177 3 6 chr4 12254915 12255226 -172033436 - AluJo SINE Alu -2 310 1 605 203 153 21 chr4 12255226 12255265 -172033397 - L1MC4 LINE L1 -996 7046 7014 1794 236 23 21 chr4 12255437 12255865 -172032797 - L1MC4 LINE L1 -1028 7014 6586 442 305 102 0 chr4 12256673 12256860 -172031802 - MIR SINE MIR -4 258 53 374 320 35 17 chr4 12257204 12257376 -172031286 + MER117 DNA MER1_type 20 194 -3 312 325 73 8 chr4 12257387 12257510 -172031152 + MER5B DNA MER1_type 3 133 -45 613 236 58 94 chr4 12258046 12258322 -172030340 + MLT1-int LTR MaLR 1106 1371 0 1156 249 81 35 chr4 12258326 12258672 -172029990 + MLT1F1 LTR MaLR 206 567 0 1732 173 0 61 chr4 12258894 12259223 -172029439 - AluJo SINE Alu -3 309 1 581 136 11 11 chr4 12259506 12259594 -172029068 - 5S rRNA rRNA -31 90 3 1750 61 5 0 chr4 12259605 12259818 -172028844 - AluSp SINE Alu -9 304 91 427 247 118 12 chr4 12259947 12260117 -172028545 - MIR3 SINE MIR -17 191 4 183 340 160 19 chr4 12260674 12260780 -172027882 + MIR SINE MIR 24 144 -64 2093 109 10 23 chr4 12260884 12261187 -172027475 - AluSq SINE Alu -14 299 1 460 269 34 20 chr4 12261190 12261339 -172027323 - MIR SINE MIR -75 187 37 222 311 0 0 chr4 12261666 12261740 -172026922 - MIR SINE MIR -1 261 188 2213 106 7 10 chr4 12261742 12262044 -172026618 - AluSc SINE Alu -8 301 1 687 312 17 4 chr4 12262617 12262848 -172025814 - MIR SINE MIR -12 250 17 397 279 31 0 chr4 12263171 12263300 -172025362 + MIR SINE MIR 116 248 -14 484 258 90 77 chr4 12263310 12263764 -172024898 - MLT1I LTR MaLR 0 409 1 192 314 47 12 chr4 12263800 12263886 -172024776 - L2 LINE L2 -16 3256 3168 453 301 49 32 chr4 12263965 12264151 -172024511 - MIR SINE MIR -62 146 5 448 127 63 0 chr4 12264529 12264608 -172024054 - AluJ/FRAM SINE Alu -15 297 214 254 261 0 34 chr4 12264652 12264740 -172023922 + L2 LINE L2 3188 3272 0 227 263 32 32 chr4 12265375 12265470 -172023192 - MIR3 SINE MIR -6 202 108 262 299 37 30 chr4 12265481 12265615 -172023047 + MIR SINE MIR 20 154 -108 1727 193 45 11 chr4 12265955 12266020 -172022642 - MLT1A1 LTR MaLR 0 365 304 252 0 0 0 chr4 12266020 12266048 -172022614 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1727 193 45 11 chr4 12266048 12266335 -172022327 - MLT1A1 LTR MaLR -61 304 1 562 230 56 8 chr4 12266842 12266968 -172021694 - LTR16B LTR ERVL -268 196 65 1663 201 25 23 chr4 12266984 12267336 -172021326 + MLT1B LTR MaLR 6 358 -32 1441 163 137 10 chr4 12267336 12267642 -172021020 - MER2 DNA MER2_type 0 345 1 257 343 122 12 chr4 12268154 12268399 -172020263 - LTR16C LTR ERVL -126 365 94 2235 96 13 19 chr4 12269286 12269598 -172019064 - AluSq SINE Alu -3 310 1 286 232 102 95 chr4 12269794 12270005 -172018657 + MIR SINE MIR 30 241 -21 540 223 109 6 chr4 12270104 12270279 -172018383 - MIR SINE MIR -30 232 40 352 272 139 23 chr4 12270393 12270566 -172018096 + L2 LINE L2 3121 3313 0 224 390 10 0 chr4 12270573 12270673 -172017989 - L2 LINE L2 -17 3296 3196 437 254 119 6 chr4 12271551 12271728 -172016934 - LTR33A LTR ERVL -10 513 317 759 300 97 25 chr4 12271839 12272159 -172016503 - MLT1I LTR MaLR -4 405 63 1667 143 20 8 chr4 12272161 12272413 -172016249 + AluSq SINE Alu 11 265 -48 979 228 49 4 chr4 12272528 12272774 -172015888 - MIR SINE MIR -3 259 3 2997 122 60 6 chr4 12272859 12273344 -172015318 + MER9 LTR ERVK 1 511 0 329 322 58 76 chr4 12273948 12274330 -172014332 + L2 LINE L2 2862 3236 -36 216 204 0 0 chr4 12275233 12275277 -172013385 + (TAA)n Simple_repeat Simple_repeat 2 45 0 372 239 54 15 chr4 12276362 12276492 -172012170 + MIR SINE MIR 89 223 -39 183 80 0 0 chr4 12276577 12276602 -172012060 + (T)n Simple_repeat Simple_repeat 1 25 0 528 308 54 23 chr4 12276737 12276997 -172011665 + L2 LINE L2 3046 3313 0 199 254 99 0 chr4 12277038 12277109 -172011553 + MIR SINE MIR 74 151 -111 880 291 65 63 chr4 12277796 12277941 -172010721 + MLT1K LTR MaLR 125 268 -320 1059 219 70 110 chr4 12277941 12278512 -172010150 + MLT1H LTR MaLR 2 549 0 880 291 65 63 chr4 12278512 12278827 -172009835 + MLT1K LTR MaLR 268 586 -2 193 388 10 0 chr4 12278972 12279075 -172009587 - L2 LINE L2 -1 3312 3209 183 283 0 0 chr4 12280271 12280317 -172008345 - L2 LINE L2 0 3272 3227 983 128 0 0 chr4 12280548 12280681 -172007981 + AluSx SINE Alu 1 133 -180 1258 134 0 0 chr4 12280711 12280890 -172007772 + AluSx SINE Alu 120 298 -14 250 389 87 0 chr4 12280971 12281097 -172007565 + L2 LINE L2 3136 3272 0 413 223 11 11 chr4 12281202 12281296 -172007366 - MLT1H LTR MaLR 0 549 456 348 302 57 48 chr4 12282101 12282349 -172006313 - MLT1J LTR MaLR 0 511 262 240 224 102 61 chr4 12282607 12282622 -172006040 - Charlie7 DNA MER1_type -2510 102 89 2275 112 0 0 chr4 12282622 12282936 -172005726 + AluSx SINE Alu 1 314 0 240 224 102 61 chr4 12282936 12283016 -172005646 - Charlie7 DNA MER1_type -2523 89 1 254 160 20 0 chr4 12283028 12283078 -172005584 - MLT1D LTR MaLR 0 626 576 1813 144 23 31 chr4 12283081 12283428 -172005234 + L1MA9 LINE L1 5958 6162 -16 1834 192 52 63 chr4 12283588 12284051 -172004611 - MLT1D LTR MaLR -41 464 7 411 234 45 36 chr4 12284071 12284182 -172004480 - L2 LINE L2 0 3313 3202 956 185 60 52 chr4 12285089 12285443 -172003219 - MER31B LTR ERV1 0 466 1 2342 87 17 0 chr4 12285575 12285875 -172002787 + AluY SINE Alu 1 305 -6 6425 226 59 55 chr4 12286004 12286386 -172002276 - L1ME LINE L1 -604 5956 5577 2107 141 0 0 chr4 12286386 12286690 -172001972 + AluSx SINE Alu 1 304 -8 6425 226 59 55 chr4 12286690 12288086 -172000576 - L1ME LINE L1 -983 5577 4188 2340 75 7 0 chr4 12288086 12288392 -172000270 + L1PA7 LINE L1 5847 6154 0 6425 226 59 55 chr4 12288392 12289353 -171999309 - L1ME LINE L1 -2372 4188 2604 493 249 60 38 chr4 12289366 12289551 -171999111 - L1ME LINE L1 -4658 1882 1694 277 329 100 46 chr4 12289571 12289851 -171998811 - L1ME LINE L1 -6205 335 41 1338 190 62 29 chr4 12290723 12290831 -171997831 + MSTC LTR MaLR 1 104 -324 207 114 0 0 chr4 12290831 12290866 -171997796 + (TGAA)n Simple_repeat Simple_repeat 4 38 0 1338 190 62 29 chr4 12290866 12291124 -171997538 + MSTC LTR MaLR 104 426 -2 249 361 54 39 chr4 12291360 12291490 -171997172 + L2 LINE L2 3137 3268 -4 379 344 6 33 chr4 12292004 12292184 -171996478 - L3 LINE CR1 -11 1566 1392 347 286 32 71 chr4 12292194 12292320 -171996342 - MER117 DNA MER1_type -6 191 71 222 239 22 0 chr4 12292695 12292741 -171995921 - MIR SINE MIR -134 74 28 24 0 0 0 chr4 12292978 12293002 -171995660 + AT_rich Low_complexity Low_complexity 1 24 0 385 222 14 0 chr4 12294032 12294104 -171994558 - AluJ/FLAM SINE Alu -219 83 11 340 256 197 0 chr4 12294312 12294449 -171994213 + MIR SINE MIR 47 210 -52 285 257 67 89 chr4 12294545 12294724 -171993938 + MIR SINE MIR 21 195 -67 1760 266 92 16 chr4 12294746 12295485 -171993177 + L2 LINE L2 2298 3083 -230 1398 128 0 0 chr4 12295946 12296133 -171992529 + AluSq SINE Alu 1 187 -126 6424 100 18 8 chr4 12296134 12297366 -171991296 + L1PA11 LINE L1 4944 6174 0 210 233 11 111 chr4 12297752 12297842 -171990820 - MIR SINE MIR -112 150 70 755 151 88 12 chr4 12298020 12298218 -171990444 + MLT1B LTR MaLR 1 232 -158 2516 149 169 26 chr4 12298218 12298755 -171989907 + LTR18B LTR ERVL 1 614 0 902 185 0 0 chr4 12298779 12298930 -171989732 + MLT1B LTR MaLR 228 378 -12 214 228 76 0 chr4 12299545 12299624 -171989038 + MIR SINE MIR 85 169 -93 630 288 36 24 chr4 12300771 12301052 -171987610 + L2 LINE L2 2792 3075 -238 361 281 86 16 chr4 12301990 12302118 -171986544 - MER20B DNA MER1_type -604 179 43 1865 64 4 60 chr4 12302540 12302629 -171986033 + L1PB1 LINE L1 5887 5980 -171 2329 112 0 3 chr4 12302629 12302943 -171985719 + AluSq SINE Alu 1 313 0 678 97 0 26 chr4 12302832 12303145 -171985517 + AluSp/q SINE Alu 204 313 0 1865 64 4 60 chr4 12302943 12303134 -171985528 + L1PB1 LINE L1 5980 6151 0 250 337 132 36 chr4 12303305 12303723 -171984939 - L2 LINE L2 -338 2976 2519 304 224 0 0 chr4 12304476 12304534 -171984128 + L2 LINE L2 3214 3271 -1 352 333 67 7 chr4 12304772 12304922 -171983740 + MIR SINE MIR 103 261 -1 227 265 36 12 chr4 12304946 12305029 -171983633 - MIR SINE MIR -61 147 71 234 156 0 0 chr4 12305029 12305074 -171983588 + (ATG)n Simple_repeat Simple_repeat 1 45 0 467 298 70 56 chr4 12305109 12305138 -171983524 - MIR SINE MIR -32 230 203 5218 141 32 57 chr4 12305138 12306861 -171981801 + L1PA13 LINE L1 4441 6159 -4 467 298 70 56 chr4 12306861 12307046 -171981616 - MIR SINE MIR -59 203 13 313 250 7 43 chr4 12307332 12307472 -171981190 - L1ME4a LINE L1 -1 6120 5986 840 263 73 34 chr4 12307477 12307613 -171981049 - HAL1b LINE L1 -901 447 318 1807 138 66 39 chr4 12307613 12307976 -171980686 - THE1C LTR MaLR 0 375 3 840 263 73 34 chr4 12307976 12308196 -171980466 - HAL1b LINE L1 -1030 318 77 217 261 0 0 chr4 12308225 12308271 -171980391 + CT-rich Low_complexity Low_complexity 3 48 0 251 299 50 50 chr4 12309298 12309468 -171979194 - MIR SINE MIR -50 212 38 951 282 169 6 chr4 12309698 12310060 -171978602 - LTR16C LTR ERVL 0 491 71 789 299 24 36 chr4 12310393 12310644 -171978018 + MIR SINE MIR 15 262 0 356 240 44 11 chr4 12310913 12311017 -171977645 - MIR SINE MIR -61 147 56 180 97 0 0 chr4 12311018 12311049 -171977613 + (A)n Simple_repeat Simple_repeat 1 31 0 391 259 133 0 chr4 12311595 12311738 -171976924 + MIR SINE MIR 31 192 -70 2369 68 0 0 chr4 12311889 12312181 -171976481 - AluY SINE Alu -19 292 1 2686 10 0 3 chr4 12312292 12312598 -171976064 - AluY SINE Alu -6 305 1 409 301 94 15 chr4 12312841 12313052 -171975610 - MIR SINE MIR -18 190 11 181 301 165 19 chr4 12313362 12313465 -171975197 + MIR SINE MIR 21 138 -124 516 295 65 20 chr4 12313829 12313998 -171974664 + MIR SINE MIR 52 233 -29 1901 145 175 11 chr4 12313998 12314364 -171974298 - MSTA LTR MaLR 0 428 3 516 295 65 20 chr4 12314364 12314394 -171974268 + MIR SINE MIR 233 260 -2 208 333 67 19 chr4 12314415 12314520 -171974142 - L2 LINE L2 -2 3270 3161 337 244 44 31 chr4 12314820 12314970 -171973692 - MIR3 SINE MIR -17 191 37 233 266 210 8 chr4 12315385 12315509 -171973153 + L2 LINE L2 3158 3306 -7 2163 82 7 16 chr4 12315565 12315870 -171972792 - AluY SINE Alu -9 302 1 197 266 42 63 chr4 12316055 12316198 -171972464 - L2 LINE L2 -568 2746 2607 14753 217 60 19 chr4 12316832 12319113 -171969549 + L1PA13 LINE L1 2 2188 -4609 2751 10 0 0 chr4 12319113 12319420 -171969242 - AluYb8 SINE Alu -11 307 1 14753 217 60 19 chr4 12319420 12319777 -171968885 + L1PA13 LINE L1 2188 2529 -4268 2011 109 53 0 chr4 12319777 12320062 -171968600 + AluSx SINE Alu 1 300 -12 14753 217 60 19 chr4 12320062 12322684 -171965978 + L1PA13 LINE L1 2529 5494 -1303 209 269 86 21 chr4 12322972 12323065 -171965597 - L2 LINE L2 -1 3271 3173 672 218 47 21 chr4 12323341 12323534 -171965128 + LTR16C LTR ERVL 281 478 -13 258 308 13 13 chr4 12323657 12323735 -171964927 - MER81 DNA DNA -36 78 1 415 222 10 20 chr4 12324219 12324318 -171964344 + MER94 DNA DNA 17 114 -20 192 222 181 0 chr4 12324318 12324390 -171964272 - MIR SINE MIR -125 137 53 2212 150 33 34 chr4 12324390 12324936 -171963726 + MLT2A2 LTR ERVL 3 544 -10 391 254 77 0 chr4 12325088 12325191 -171963471 - MIR3 SINE MIR -51 157 54 180 313 16 0 chr4 12326438 12326502 -171962160 + L2 LINE L2 3001 3065 -207 791 289 75 21 chr4 12326547 12326748 -171961914 + L2 LINE L2 2929 3156 -157 2656 112 18 50 chr4 12326748 12327187 -171961475 - MSTA LTR MaLR -1 427 3 791 289 75 21 chr4 12327187 12327317 -171961345 + L2 LINE L2 3156 3278 -35 315 71 0 0 chr4 12327379 12327421 -171961241 + (TGAA)n Simple_repeat Simple_repeat 4 45 0 302 345 0 0 chr4 12327444 12327528 -171961134 + L2 LINE L2 3187 3270 -2 477 292 182 15 chr4 12327557 12327701 -171960961 + L2 LINE L2 2715 2834 -479 3479 137 24 7 chr4 12327701 12328255 -171960407 + MER34B LTR ERV1 1 563 -2 477 292 182 15 chr4 12328255 12328620 -171960042 + L2 LINE L2 2834 3313 0 386 313 47 40 chr4 12328712 12328836 -171959826 + L2 LINE L2 3122 3249 -23 1673 167 46 0 chr4 12328836 12329118 -171959544 - AluJo SINE Alu -17 295 1 386 313 47 40 chr4 12329118 12329143 -171959519 + L2 LINE L2 3249 3272 0 1523 239 44 28 chr4 12329456 12329892 -171958770 + LTR47B LTR ERVL 1 443 0 610 191 0 0 chr4 12330478 12330583 -171958079 + MLT1D LTR MaLR 47 151 -354 995 237 19 0 chr4 12330816 12331031 -171957631 + MER20 DNA MER1_type 1 219 0 238 256 158 0 chr4 12331763 12331845 -171956817 + MIR SINE MIR 50 144 -118 325 86 35 0 chr4 12331884 12331942 -171956720 + (TTA)n Simple_repeat Simple_repeat 2 61 0 362 325 69 32 chr4 12332010 12332256 -171956406 + L2 LINE L2 2674 2928 -386 325 250 60 30 chr4 12333082 12333182 -171955480 + MIR SINE MIR 159 261 -1 183 100 0 0 chr4 12333182 12333212 -171955450 + (ATG)n Simple_repeat Simple_repeat 2 31 0 181 235 59 47 chr4 12334936 12335021 -171953641 + L2 LINE L2 2672 2757 -557 231 219 21 125 chr4 12335350 12335446 -171953216 + L2 LINE L2 3223 3308 -5 789 229 124 40 chr4 12335517 12335941 -171952721 + MLT1C LTR MaLR 1 467 0 211 261 46 15 chr4 12336405 12336470 -171952192 + MIR SINE MIR 29 95 -167 631 245 13 50 chr4 12336605 12336764 -171951898 - FRAM SINE Alu -13 153 1 21 0 0 0 chr4 12336771 12336792 -171951870 + AT_rich Low_complexity Low_complexity 1 21 0 1860 182 71 35 chr4 12336972 12337423 -171951239 - MLT1C LTR MaLR 0 467 1 305 281 176 7 chr4 12337423 12337576 -171951086 + MIR SINE MIR 14 192 -70 358 193 108 0 chr4 12337803 12337886 -171950776 - MIR3 SINE MIR -25 183 92 324 250 0 29 chr4 12338730 12338834 -171949828 + LTR33 LTR ERVL 414 514 -7 270 281 11 0 chr4 12338848 12338994 -171949668 + L2 LINE L2 3194 3306 -7 1296 259 89 44 chr4 12339056 12339538 -171949124 + MLT1H LTR MaLR 4 549 0 279 333 104 5 chr4 12339578 12339770 -171948892 + L2 LINE L2 2636 2846 -468 281 230 40 54 chr4 12339895 12339969 -171948693 - MER91B DNA MER1_type 0 190 118 203 233 0 0 chr4 12341105 12341148 -171947514 - MER91B DNA MER1_type -153 43 1 320 269 96 10 chr4 12341290 12341394 -171947268 + MIR SINE MIR 18 130 -132 563 210 0 25 chr4 12341731 12341850 -171946812 + MER106B DNA MER1_type 36 151 -908 356 269 39 0 chr4 12341886 12341990 -171946672 + LTR33 LTR ERVL 354 461 -60 1581 160 11 4 chr4 12342011 12342311 -171946351 + AluJo SINE Alu 18 319 0 218 213 21 0 chr4 12342885 12342932 -171945730 + (TTCA)n Simple_repeat Simple_repeat 1 48 0 236 269 75 0 chr4 12343741 12343808 -171944854 + L2 LINE L2 3162 3233 -39 2213 255 63 44 chr4 12343856 12344565 -171944097 + MER21B LTR ERV1 15 737 -126 192 211 0 0 chr4 12344665 12344703 -171943959 + L2 LINE L2 3272 3309 -4 197 253 193 0 chr4 12344714 12344797 -171943865 - L2 LINE L2 -13 3300 3202 381 102 0 0 chr4 12345037 12345096 -171943566 + (TG)n Simple_repeat Simple_repeat 1 59 0 552 249 85 6 chr4 12346878 12347043 -171941619 - MER5B DNA MER1_type 0 178 1 348 253 22 18 chr4 12347196 12347368 -171941294 - MER58 DNA MER1_type 0 2420 20 482 368 0 0 chr4 12347368 12347539 -171941123 + L3 LINE CR1 1405 1575 -2 272 388 26 0 chr4 12348036 12348152 -171940510 + MIR SINE MIR 20 138 -124 2022 69 0 4 chr4 12348152 12348412 -171940250 + AluY SINE Alu 43 301 -10 258 32 0 0 chr4 12348816 12348847 -171939815 + (CA)n Simple_repeat Simple_repeat 2 32 0 281 148 74 0 chr4 12348901 12348955 -171939707 + MIR SINE MIR 203 260 -2 437 386 73 0 chr4 12349048 12349268 -171939394 + MIR SINE MIR 20 255 -7 459 297 179 16 chr4 12349562 12349875 -171938787 + MLT1J2 LTR MaLR 87 450 0 662 240 0 39 chr4 12349986 12350140 -171938522 - AluJo SINE Alu -44 268 121 4252 74 7 4 chr4 12350316 12350867 -171937795 + L1PA10 LINE L1 5606 6158 -10 427 244 53 38 chr4 12351284 12351415 -171937247 - L2 LINE L2 -1 3312 3180 1014 225 14 19 chr4 12351424 12351633 -171937029 + MER58A DNA MER1_type 9 216 -8 252 265 0 15 chr4 12351753 12351821 -171936841 - L2 LINE L2 -236 3077 3011 196 221 58 58 chr4 12351818 12351904 -171936758 + L2 LINE L2 3183 3268 -45 * 434 63 0 16 chr4 12352108 12352171 -171936491 + (TG)n Simple_repeat Simple_repeat 1 62 0 300 321 19 19 chr4 12352548 12352654 -171936008 - MIR SINE MIR -56 152 47 183 352 23 0 chr4 12352792 12352880 -171935782 + MIR SINE MIR 173 262 0 554 317 7 40 chr4 12353337 12353587 -171935075 + MIR SINE MIR 7 249 -13 189 288 41 14 chr4 12353588 12353661 -171935001 - MIR SINE MIR -3 259 185 2203 55 4 7 chr4 12353669 12353941 -171934721 + L1PA7 LINE L1 5865 6135 -19 291 54 0 0 chr4 12353941 12353978 -171934684 + (TA)n Simple_repeat Simple_repeat 2 38 0 221 348 185 0 chr4 12354261 12354396 -171934266 - L2 LINE L2 -186 3086 2927 390 259 72 126 chr4 12354599 12354947 -171933715 - L2 LINE L2 0 3272 2944 248 309 48 33 chr4 12355519 12355654 -171933008 + MIR SINE MIR 26 171 -37 557 246 123 0 chr4 12355703 12355882 -171932780 - MIR SINE MIR -44 218 18 689 258 6 18 chr4 12355932 12356099 -171932563 - MIR3 SINE MIR -14 194 30 355 337 0 8 chr4 12357058 12357178 -171931484 + MIR SINE MIR 37 154 -63 282 283 62 35 chr4 12357259 12357404 -171931258 - MIR SINE MIR -94 168 20 488 370 40 9 chr4 12358167 12358391 -171930271 + MIR SINE MIR 20 250 -12 394 254 8 51 chr4 12358427 12358545 -171930117 + MIR3 SINE MIR 48 160 -48 1013 198 20 20 chr4 12358548 12358750 -171929912 - MIR SINE MIR -3 259 58 181 333 97 0 chr4 12358965 12359037 -171929625 + L2 LINE L2 3193 3271 -1 390 108 0 0 chr4 12359219 12359284 -171929378 + (GGGA)n Simple_repeat Simple_repeat 1 65 0 714 290 84 9 chr4 12359728 12360166 -171928496 + L1ME4a LINE L1 5603 6073 -48 2487 240 113 10 chr4 12361366 12362619 -171926043 - L1ME1 LINE L1 -5 6161 4753 794 279 82 9 chr4 12362624 12362857 -171925805 - MIR SINE MIR -10 252 3 391 256 0 26 chr4 12363038 12363155 -171925507 + MLT1B LTR MaLR 3 116 -274 * 1676 194 29 62 chr4 12363154 12363301 -171925361 + MLT1C LTR MaLR 64 214 -253 1926 120 3 43 chr4 12363301 12363600 -171925062 + AluSx SINE Alu 18 304 -8 1676 194 29 62 chr4 12363600 12363870 -171924792 + MLT1C LTR MaLR 214 467 0 297 128 0 0 chr4 12364657 12364704 -171923958 + (TC)n Simple_repeat Simple_repeat 1 47 0 2577 105 16 13 chr4 12366303 12366676 -171921986 - THE1C LTR MaLR -1 374 1 245 232 126 53 chr4 12367142 12367237 -171921425 + L2 LINE L2 2641 2742 -572 450 139 0 0 chr4 12367243 12367329 -171921333 + L1 LINE L1 5154 5239 -907 338 342 38 33 chr4 12367480 12367664 -171920998 + LTR33 LTR ERVL 94 278 -243 332 319 43 27 chr4 12367811 12367999 -171920663 + L2 LINE L2 3050 3240 -73 1241 196 63 14 chr4 12368158 12368580 -171920082 - MLT1C LTR MaLR -6 461 1 564 233 101 49 chr4 12368580 12368820 -171919842 - MIR SINE MIR -4 258 4 216 228 18 0 chr4 12369407 12369464 -171919198 + (TA)n Simple_repeat Simple_repeat 2 59 0 303 256 83 39 chr4 12369464 12369620 -171919042 - L1MCa LINE L1 -4350 2076 1914 263 134 73 12 chr4 12369628 12369710 -171918952 + (TA)n Simple_repeat Simple_repeat 1 87 0 2714 168 39 14 chr4 12369814 12370307 -171918355 - MLT1D LTR MaLR 0 505 1 379 336 23 8 chr4 12370318 12370446 -171918216 - MIR SINE MIR -113 149 20 186 347 0 0 chr4 12370627 12370702 -171917960 + L2 LINE L2 2979 3053 -219 237 271 98 33 chr4 12370971 12371093 -171917569 + L2 LINE L2 3136 3265 -7 291 222 136 25 chr4 12371564 12371645 -171917017 + MIR SINE MIR 63 144 -64 696 308 36 18 chr4 12371733 12371954 -171916708 - MIR SINE MIR 0 262 38 304 252 113 63 chr4 12372117 12372276 -171916386 + L1ME4a LINE L1 5827 5993 -128 451 282 8 17 chr4 12372936 12373053 -171915609 - MIR SINE MIR -120 142 27 35 0 0 0 chr4 12374206 12374241 -171914421 + AT_rich Low_complexity Low_complexity 1 35 0 1567 38 0 0 chr4 12374241 12374424 -171914238 - L1PA5 LINE L1 -9 6145 5963 244 150 25 0 chr4 12374447 12374487 -171914175 + MLT1J LTR MaLR 100 140 -371 242 241 13 13 chr4 12374580 12374659 -171914003 + MLT1J LTR MaLR 233 311 -200 579 298 56 0 chr4 12374668 12374846 -171913816 - MER91B DNA MER1_type 0 190 3 296 298 125 0 chr4 12374933 12375037 -171913625 + MER94 DNA DNA 12 128 -6 301 252 143 8 chr4 12375038 12375157 -171913505 + MLT1J LTR MaLR 376 510 -1 272 292 124 0 chr4 12375166 12375279 -171913383 + MIR SINE MIR 18 144 -64 2450 85 3 3 chr4 12376511 12376839 -171911823 + L1PA7 LINE L1 5825 6152 -2 425 356 71 8 chr4 12377262 12377501 -171911161 + MIR SINE MIR 9 262 0 3617 31 0 0 chr4 12377558 12377983 -171910679 + L1PA4 LINE L1 5731 6155 0 2268 149 42 114 chr4 12378391 12378935 -171909727 + MLT1D LTR MaLR 1 505 0 273 29 0 0 chr4 12378975 12379009 -171909653 + (TG)n Simple_repeat Simple_repeat 1 34 0 438 108 0 0 chr4 12379009 12379083 -171909579 + (GA)n Simple_repeat Simple_repeat 2 75 0 367 195 176 19 chr4 12379653 12379824 -171908838 - MIR SINE MIR -58 150 18 294 264 18 55 chr4 12380752 12380862 -171907800 - MIR SINE MIR -83 125 20 2228 103 7 0 chr4 12380920 12381211 -171907451 - AluSp SINE Alu -20 293 1 397 312 21 14 chr4 12381237 12381378 -171907284 - MIR SINE MIR -107 155 14 281 257 54 14 chr4 12382268 12382342 -171906320 - MIR SINE MIR -79 183 107 2259 115 7 0 chr4 12383001 12383306 -171905356 - AluSx SINE Alu -4 308 2 991 197 14 9 chr4 12383396 12383609 -171905053 + MER20 DNA MER1_type 1 214 -5 368 248 139 16 chr4 12383699 12383828 -171904834 + MIR SINE MIR 84 228 -34 314 274 42 21 chr4 12384180 12384275 -171904387 + MIR SINE MIR 28 124 -138 193 330 17 17 chr4 12384353 12384471 -171904191 - MIR SINE MIR -68 140 23 449 284 90 0 chr4 12385316 12385450 -171903212 - L3 LINE CR1 -28 1549 1404 439 281 16 23 chr4 12385870 12385998 -171902664 - MIR SINE MIR -108 154 28 535 269 67 7 chr4 12386363 12386512 -171902150 - MIR3 SINE MIR -22 186 29 209 271 105 60 chr4 12386719 12386852 -171901810 + L3 LINE CR1 1432 1570 -7 1236 63 0 1 chr4 12387695 12387877 -171900785 - L1PA10 LINE L1 -305 5863 5706 2251 72 17 0 chr4 12387883 12388167 -171900495 + L1PA10 LINE L1 5872 6168 0 244 277 102 17 chr4 12388346 12388523 -171900139 + LTR16A LTR ERVL 259 450 0 3139 106 81 50 chr4 12388924 12389507 -171899155 + LTR18B LTR ERVL 1 601 -13 298 250 70 47 chr4 12389514 12389642 -171899020 + L2 LINE L2 2935 3065 -207 188 270 14 27 chr4 12389739 12389813 -171898849 - L2 LINE L2 -24 3248 3176 300 275 135 35 chr4 12390033 12390233 -171898429 + LTR16C LTR ERVL 171 390 -101 304 275 58 0 chr4 12390308 12390428 -171898234 + LTR16C LTR ERVL 353 479 -12 481 324 131 9 chr4 12391122 12391344 -171897318 + MIR SINE MIR 14 262 0 437 343 81 12 chr4 12392047 12392219 -171896443 + MIR SINE MIR 55 238 -24 1377 207 106 71 chr4 12392324 12392708 -171895954 + MLT1C LTR MaLR 1 403 -64 2270 107 13 0 chr4 12392708 12393007 -171895655 - AluSq SINE Alu -10 303 1 1377 207 106 71 chr4 12393007 12393057 -171895605 + MLT1C LTR MaLR 403 450 -17 485 254 82 65 chr4 12393508 12393677 -171894985 + Charlie7 DNA MER1_type 238 414 -2198 697 186 0 64 chr4 12393677 12393817 -171894845 + FLAM_A SINE Alu 1 131 -2 485 254 82 65 chr4 12393817 12393879 -171894783 + Charlie7 DNA MER1_type 414 473 -2139 1034 238 83 79 chr4 12393931 12394140 -171894522 + Charlie7 DNA MER1_type 1674 1881 -731 2189 98 0 7 chr4 12394140 12394453 -171894209 + AluSx SINE Alu 1 311 0 1034 238 83 79 chr4 12394453 12394784 -171893878 + Charlie7 DNA MER1_type 1881 2217 -395 337 305 11 21 chr4 12394828 12394923 -171893739 - MIR SINE MIR -52 210 117 556 215 45 44 chr4 12395462 12395754 -171892908 - MLT1A2 LTR MaLR -3 371 1 241 242 32 0 chr4 12395807 12395869 -171892793 + CT-rich Low_complexity Low_complexity 3 66 0 487 339 92 0 chr4 12396382 12396621 -171892041 + L3 LINE CR1 1284 1544 -33 220 268 0 36 chr4 12397170 12397226 -171891436 - L2 LINE L2 -20 3293 3240 732 42 0 0 chr4 12397604 12397700 -171890962 + (TC)n Simple_repeat Simple_repeat 2 97 0 315 0 0 0 chr4 12397699 12397734 -171890928 + (TA)n Simple_repeat Simple_repeat 2 36 0 * 1297 266 54 36 chr4 12398034 12398425 -171890237 - L2 LINE L2 -1 3312 2915 189 232 101 0 chr4 12399033 12399102 -171889560 - MIR SINE MIR -92 116 41 275 240 150 30 chr4 12399259 12399359 -171889303 + MIR SINE MIR 76 148 -60 1769 174 70 88 chr4 12399385 12399897 -171888765 - MLT1D LTR MaLR -2 503 1 251 308 105 58 chr4 12400259 12400378 -171888284 - MIR3 SINE MIR -26 182 51 4868 95 6 0 chr4 12400378 12401033 -171887629 - L1PA8 LINE L1 0 6172 5514 251 308 105 58 chr4 12401033 12401085 -171887577 - MIR3 SINE MIR -157 51 3 257 301 24 0 chr4 12401229 12401312 -171887350 - MIR3 SINE MIR -24 184 100 737 185 7 7 chr4 12401829 12401980 -171886682 + MLT1A1 LTR MaLR 1 151 -214 280 336 19 9 chr4 12402044 12402151 -171886511 - MIR SINE MIR -68 140 33 2565 78 0 0 chr4 12403997 12404306 -171884356 - AluY SINE Alu -2 309 1 280 327 29 10 chr4 12404410 12404514 -171884148 + MIR SINE MIR 37 142 -66 264 188 42 0 chr4 12404773 12404821 -171883841 + MLT1A1 LTR MaLR 111 160 -389 636 277 32 11 chr4 12405240 12405428 -171883234 + MIR SINE MIR 25 216 -46 269 245 0 3 chr4 12406347 12406420 -171882242 + MIR SINE MIR 89 147 -61 450 282 15 0 chr4 12406674 12406805 -171881857 - MIR SINE MIR -48 214 82 228 306 25 25 chr4 12407065 12407186 -171881476 + MIR SINE MIR 106 226 -36 784 204 10 40 chr4 12409199 12409400 -171879262 + L1MB7 LINE L1 5964 6158 -26 601 256 39 55 chr4 12410900 12411154 -171877508 + MIR SINE MIR 13 262 0 251 359 50 11 chr4 12411155 12411336 -171877326 - MIR SINE MIR -48 214 27 180 283 0 0 chr4 12411565 12411611 -171877051 + L2 LINE L2 3268 3313 0 2045 230 46 53 chr4 12413210 12413780 -171874882 + MER74B LTR ERVL 57 622 0 693 250 17 11 chr4 12413972 12414148 -171874514 - MER5B DNA MER1_type -1 177 1 1118 272 40 13 chr4 12414224 12414603 -171874059 + LTR16A LTR ERVL 62 450 0 776 171 0 0 chr4 12414649 12414778 -171873884 + MER31A LTR ERV1 1 129 -356 222 254 0 0 chr4 12414967 12415022 -171873640 + L2 LINE L2 3218 3272 0 4114 149 40 7 chr4 12416220 12417036 -171871626 + L1MA4A LINE L1 5380 6283 -20 350 290 0 69 chr4 12417509 12417640 -171871022 + MIR SINE MIR 20 141 -121 1822 159 164 13 chr4 12417689 12418026 -171870636 + MSTA LTR MaLR 1 400 -28 1757 156 33 0 chr4 12418026 12418302 -171870360 - AluJb SINE Alu -15 297 13 1822 159 164 13 chr4 12418302 12418336 -171870326 + MSTA LTR MaLR 400 428 0 211 308 22 11 chr4 12418363 12418454 -171870208 + L3 LINE CR1 1480 1571 -6 404 260 49 73 chr4 12418894 12419098 -171869564 + MIR SINE MIR 28 226 -36 1813 176 16 16 chr4 12419106 12419281 -171869381 - AluJb SINE Alu -6 306 132 231 36 0 0 chr4 12419281 12419309 -171869353 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2058 117 4 0 chr4 12419309 12419590 -171869072 - AluSp SINE Alu -31 282 1 1813 176 16 16 chr4 12419590 12419719 -171868943 - AluJb SINE Alu -178 134 1 4283 124 14 9 chr4 12420263 12420908 -171867754 + MER50 LTR ERV1 59 706 -28 236 197 0 121 chr4 12420959 12421025 -171867637 - MER5A DNA MER1_type -64 125 68 2327 99 0 3 chr4 12421027 12421331 -171867331 - AluSq SINE Alu 0 313 11 2257 100 19 13 chr4 12421364 12421673 -171866989 + AluY SINE Alu 1 311 0 206 292 14 28 chr4 12421712 12421784 -171866878 + L3 LINE CR1 1411 1481 -96 2764 239 104 63 chr4 12422449 12423478 -171865184 + HAL1 LINE L1 659 1760 -747 2508 73 6 12 chr4 12423478 12423821 -171864841 + L1PA7 LINE L1 5814 6154 0 2764 239 104 63 chr4 12423821 12424171 -171864491 + HAL1 LINE L1 1760 2094 -413 1309 105 16 174 chr4 12424267 12424572 -171864090 + AluSq SINE Alu 46 302 -11 470 256 48 35 chr4 12424615 12424842 -171863820 + HAL1 LINE L1 2276 2505 -2 666 277 13 22 chr4 12426121 12426345 -171862317 - MIR SINE MIR -37 225 4 6658 89 8 6 chr4 12426410 12427894 -171860768 + L1PA10 LINE L1 4672 6166 -2 341 337 52 23 chr4 12428026 12428198 -171860464 + L2 LINE L2 2896 3072 -200 1712 142 36 26 chr4 12428204 12428506 -171860156 - THE1B LTR MaLR -59 305 1 237 267 34 68 chr4 12428939 12429085 -171859577 - MER5A DNA MER1_type 0 189 49 360 212 8 102 chr4 12429372 12429490 -171859172 - MER5A DNA MER1_type -77 112 6 194 248 142 35 chr4 12430029 12430142 -171858520 + MIR SINE MIR 18 142 -66 583 259 33 58 chr4 12430194 12430437 -171858225 - MIR SINE MIR -4 258 22 256 302 81 23 chr4 12430949 12431121 -171857541 + L1ME4a LINE L1 3364 3545 -2601 230 154 0 0 chr4 12431182 12431221 -171857441 + MLT1D LTR MaLR 467 505 0 396 291 35 82 chr4 12431314 12431537 -171857125 + L1ME4a LINE L1 5522 5727 -394 1924 149 10 0 chr4 12431537 12431832 -171856830 + AluSx SINE Alu 1 298 -14 396 291 35 82 chr4 12431832 12431927 -171856735 + L1ME4a LINE L1 5727 5825 -296 231 222 0 67 chr4 12432225 12432315 -171856347 - L1M4 LINE L1 -1497 4649 4566 1166 166 81 110 chr4 12432524 12433278 -171855384 + LTR2B-int LTR ERV1 1546 3482 -3116 927 174 14 43 chr4 12433545 12433752 -171854910 + LTR2B-int LTR ERV1 3536 3736 -2862 1410 185 136 84 chr4 12433820 12434673 -171853989 + LTR2B-int LTR ERV1 2477 4646 -1685 1462 296 41 35 chr4 12434691 12434727 -171853935 + L1PBa LINE L1 3 37 -6826 2530 112 31 8 chr4 12434727 12435083 -171853579 - THE1B LTR MaLR 0 364 1 1462 296 41 35 chr4 12435083 12435722 -171852940 + L1PBa LINE L1 37 682 -6181 1888 241 45 46 chr4 12435750 12435871 -171852791 + LTR2B-int LTR ERV1 4245 4365 -506 3396 82 43 39 chr4 12435871 12436359 -171852303 + LTR2B LTR ERV1 1 490 0 1888 241 45 46 chr4 12436359 12436864 -171851798 + LTR2B-int LTR ERV1 4365 4870 -1 2582 154 15 42 chr4 12436864 12437319 -171851343 + MER65A LTR ERV1 1 443 -2 10751 183 42 7 chr4 12437736 12438622 -171850040 + L1PA16 LINE L1 2761 3615 -2551 3259 55 12 2 chr4 12438622 12439039 -171849623 + L1PA4 LINE L1 5735 6155 0 10751 183 42 7 chr4 12439039 12441427 -171847235 + L1PA16 LINE L1 3615 6156 -10 211 292 143 37 chr4 12442022 12442238 -171846424 + L2 LINE L2 2354 2592 -722 333 222 50 20 chr4 12442451 12442550 -171846112 + Charlie8 DNA MER1_type 71 172 -2245 300 53 0 0 chr4 12442694 12442732 -171845930 + (CCCCCT)n Simple_repeat Simple_repeat 1 38 0 276 288 0 0 chr4 12443036 12443102 -171845560 + L2 LINE L2 3248 3313 0 234 231 31 0 chr4 12443304 12443369 -171845293 - MIR SINE MIR -60 148 82 369 137 68 0 chr4 12444003 12444076 -171844586 + L1MB4 LINE L1 6103 6180 0 225 160 208 47 chr4 12444490 12444596 -171844066 + L2 LINE L2 3167 3289 -24 288 296 65 42 chr4 12444954 12445170 -171843492 + L2 LINE L2 2836 3056 -216 230 267 3 3 chr4 12445215 12445277 -171843385 - MIR SINE MIR -113 95 34 337 235 0 0 chr4 12446450 12446518 -171842144 + L2 LINE L2 3205 3272 0 245 241 86 52 chr4 12448416 12448532 -171840130 + L2 LINE L2 3194 3313 0 538 309 122 28 chr4 12448543 12448896 -171839766 + L2 LINE L2 2928 3313 0 1010 193 11 21 chr4 12449823 12450010 -171838652 + MER58A DNA MER1_type 37 221 -3 199 273 18 0 chr4 12450624 12450679 -171837983 - MIR SINE MIR -55 153 98 514 189 8 8 chr4 12450734 12450856 -171837806 + CT-rich Low_complexity Low_complexity 3 124 0 649 152 203 19 chr4 12450912 12451070 -171837592 - MLT1B LTR MaLR -203 187 1 223 159 0 0 chr4 12451651 12451695 -171836967 + L2 LINE L2 3269 3312 -1 579 66 0 0 chr4 12452318 12452394 -171836268 + (TTCC)n Simple_repeat Simple_repeat 1 76 0 1294 225 117 9 chr4 12453115 12453440 -171835222 - MLT1A1 LTR MaLR -3 362 3 2257 108 0 0 chr4 12453474 12453771 -171834891 + AluY SINE Alu 1 297 -14 249 303 67 0 chr4 12454488 12454577 -171834085 - LTR16A LTR ERVL -346 104 10 692 271 61 33 chr4 12455768 12455982 -171832680 + MIR SINE MIR 19 238 -24 1768 269 105 40 chr4 12456094 12456189 -171832473 - L2 LINE L2 -1048 2266 2179 2290 128 0 0 chr4 12456189 12456494 -171832168 + AluSx SINE Alu 1 305 -7 1768 269 105 40 chr4 12456494 12457150 -171831512 - L2 LINE L2 -1135 2179 1466 278 255 75 11 chr4 12457158 12457252 -171831410 + MIR SINE MIR 106 205 -57 278 271 79 50 chr4 12457756 12457896 -171830766 + MIR3 SINE MIR 58 201 -7 3838 209 23 62 chr4 12458009 12459017 -171829645 - LTR5 LTR ERVK 0 969 1 1264 151 11 1 chr4 12459252 12459624 -171829038 - MSTB LTR MaLR 0 426 1 538 260 24 8 chr4 12460021 12460167 -171828495 + MLT1H1 LTR MaLR 437 555 0 230 364 45 0 chr4 12460229 12460339 -171828323 - MIR3 SINE MIR -17 191 77 1090 242 28 3 chr4 12460341 12460697 -171827965 - L1 LINE L1 -2751 3395 3031 279 253 0 0 chr4 12462231 12462310 -171826352 + (ATGGTG)n Simple_repeat Simple_repeat 2 80 0 720 222 0 0 chr4 12462343 12462523 -171826139 + (TGG)n Simple_repeat Simple_repeat 1 180 0 725 212 6 0 chr4 12462547 12462726 -171825936 + (TGG)n Simple_repeat Simple_repeat 1 180 0 578 281 22 16 chr4 12462734 12462919 -171825743 - MIR SINE MIR -1 261 76 2399 87 7 0 chr4 12463237 12463535 -171825127 - AluSp SINE Alu -11 302 3 212 186 0 23 chr4 12463742 12463785 -171824877 + CT-rich Low_complexity Low_complexity 2 43 0 231 244 47 122 chr4 12464132 12464215 -171824447 - MIR SINE MIR 0 262 196 2153 106 7 0 chr4 12464215 12464525 -171824137 - AluSp SINE Alu 0 312 1 231 244 47 122 chr4 12464525 12464612 -171824050 - MIR SINE MIR -66 196 104 306 276 58 19 chr4 12464928 12465084 -171823578 + MLT1H LTR MaLR 347 508 -41 414 187 0 0 chr4 12465084 12465159 -171823503 - AluJ/FRAM SINE Alu -12 300 226 221 219 0 0 chr4 12465235 12465276 -171823386 - MIR SINE MIR -209 53 13 192 268 0 0 chr4 12465282 12465323 -171823339 + MIR SINE MIR 104 144 -64 213 65 0 0 chr4 12465779 12465810 -171822852 + (GA)n Simple_repeat Simple_repeat 1 31 0 428 301 182 7 chr4 12465822 12465965 -171822697 - MIR SINE MIR -75 187 20 604 282 253 2 chr4 12466177 12466647 -171822015 + L2 LINE L2 2707 3312 -1 502 219 18 0 chr4 12467458 12467572 -171821090 - LTR33A LTR ERVL -6 517 402 468 203 472 8 chr4 12467568 12467922 -171820740 - LTR50 LTR ERVL -277 518 1 * 186 133 0 0 chr4 12467943 12467973 -171820689 + (TCCC)n Simple_repeat Simple_repeat 4 33 0 302 274 0 0 chr4 12467980 12468053 -171820609 + HsTC2 DNA Tc2 1828 1900 0 311 311 66 19 chr4 12468200 12468306 -171820356 + MIR SINE MIR 34 144 -64 707 295 5 34 chr4 12468309 12468469 -171820193 - MIR SINE MIR -2 260 106 2300 123 0 0 chr4 12468469 12468777 -171819885 - AluSx SINE Alu -4 308 1 707 295 5 34 chr4 12468777 12468823 -171819839 - MIR SINE MIR -156 106 60 994 144 0 0 chr4 12469068 12469214 -171819448 + AluSg/x SINE Alu 166 311 -1 1433 291 35 22 chr4 12469214 12469675 -171818987 - L2 LINE L2 -412 2902 2436 290 330 193 5 chr4 12470124 12470342 -171818320 + L3 LINE CR1 1131 1389 -188 1581 273 111 6 chr4 12470378 12470927 -171817735 + L2 LINE L2 899 1505 -1809 808 307 175 15 chr4 12470932 12471560 -171817102 + L2 LINE L2 2577 3311 -2 325 405 76 0 chr4 12471678 12471836 -171816826 - L2 LINE L2 -1 3271 3102 775 255 113 20 chr4 12472297 12472650 -171816012 + LTR16A1 LTR ERVL 58 443 -14 329 167 56 22 chr4 12472839 12472929 -171815733 + MLT1K LTR MaLR 338 430 -158 1544 179 73 20 chr4 12472949 12473290 -171815372 + MLT1B LTR MaLR 32 390 0 235 281 237 7 chr4 12473459 12473594 -171815068 + MLT1K LTR MaLR 10 175 -413 1122 175 53 10 chr4 12473678 12473884 -171814778 - MER20 DNA MER1_type 0 219 5 627 217 111 32 chr4 12473969 12474186 -171814476 + MLT1K LTR MaLR 338 571 -17 202 316 38 25 chr4 12474222 12474301 -171814361 - MIR SINE MIR -70 192 113 386 237 41 10 chr4 12474414 12474511 -171814151 + L2 LINE L2 3173 3272 0 224 343 127 30 chr4 12474593 12474734 -171813928 + L3 LINE CR1 1293 1454 -123 243 103 0 0 chr4 12474734 12474773 -171813889 + (ATG)n Simple_repeat Simple_repeat 3 41 0 224 343 127 30 chr4 12474773 12474797 -171813865 + L3 LINE CR1 1454 1474 -103 364 329 105 0 chr4 12474820 12474972 -171813690 - MIR SINE MIR -49 213 46 189 325 0 26 chr4 12474992 12475069 -171813593 + L3 LINE CR1 1400 1474 -103 198 191 0 0 chr4 12475898 12475940 -171812722 + T-rich Low_complexity Low_complexity 1 42 0 272 289 67 81 chr4 12475965 12476125 -171812537 - MIR SINE MIR -61 147 4 203 369 10 10 chr4 12476418 12476521 -171812141 + MIR SINE MIR 38 140 -68 588 241 25 44 chr4 12477095 12477253 -171811409 - MIR SINE MIR -74 188 34 400 278 18 41 chr4 12477507 12477676 -171810986 + L1MC4a LINE L1 5697 5861 -1947 486 292 73 36 chr4 12477687 12478016 -171810646 + LTR33 LTR ERVL 10 350 -171 354 224 56 28 chr4 12478455 12478562 -171810100 - L1M4 LINE L1 -968 5178 5069 359 252 165 0 chr4 12478595 12478698 -171809964 - MIR SINE MIR -62 146 27 2135 129 0 0 chr4 12478779 12479066 -171809596 + AluSx SINE Alu 5 291 -21 796 230 79 3 chr4 12479115 12479457 -171809205 + L1ME3A LINE L1 5101 5462 -712 192 241 37 19 chr4 12479485 12479539 -171809123 + MER5A DNA MER1_type 132 186 -3 395 267 205 2 chr4 12479642 12479794 -171808868 + MIR SINE MIR 17 192 -37 783 315 57 34 chr4 12479863 12480307 -171808355 + L1ME3A LINE L1 5497 5951 -219 1160 164 0 60 chr4 12480447 12480679 -171807983 - AluJo SINE Alu -54 258 41 1063 296 70 52 chr4 12480848 12481420 -171807242 - L2 LINE L2 -337 2977 2396 212 293 253 0 chr4 12481605 12481704 -171806958 - L2 LINE L2 -4 3268 3145 487 325 105 34 chr4 12481716 12482134 -171806528 - MLT1L LTR MaLR 0 615 168 340 269 22 15 chr4 12482154 12482288 -171806374 + L2 LINE L2 2370 2504 -810 897 167 37 60 chr4 12482304 12482520 -171806142 + MLT1C LTR MaLR 1 211 -256 * 1829 181 5 73 chr4 12482516 12482924 -171805738 + MLT1B LTR MaLR 11 390 0 185 197 30 76 chr4 12482943 12483009 -171805653 + L2 LINE L2 2553 2615 -699 710 268 97 64 chr4 12483143 12483628 -171805034 + LTR67 LTR ERVL 3 503 -54 245 263 202 0 chr4 12483673 12483772 -171804890 - MIR SINE MIR -59 203 85 2199 126 0 0 chr4 12483928 12484230 -171804432 + AluSx SINE Alu 1 302 -10 218 304 174 31 chr4 12484232 12484393 -171804269 - L2 LINE L2 -10 3262 3079 494 330 60 14 chr4 12485209 12485424 -171803238 - MIR SINE MIR -26 236 12 948 293 78 5 chr4 12485682 12486064 -171802598 + MLT1J2 LTR MaLR 41 450 0 224 394 0 0 chr4 12486456 12486527 -171802135 - L2 LINE L2 -94 3178 3108 294 327 72 0 chr4 12486793 12486946 -171801716 - L2 LINE L2 -557 2757 2594 192 272 103 87 chr4 12487044 12487228 -171801434 + MIR3 SINE MIR 10 196 -12 * 721 242 101 0 chr4 12487200 12487378 -171801284 + MIR SINE MIR 53 248 -14 2657 192 18 38 chr4 12487987 12488560 -171800102 + MER68 LTR ERV1 1 561 -1 301 308 77 34 chr4 12489203 12489320 -171799342 + MIR SINE MIR 128 249 -13 393 330 100 10 chr4 12489797 12489997 -171798665 + L1ME4a LINE L1 5700 5917 -204 313 290 136 56 chr4 12490027 12490189 -171798473 + MIR SINE MIR 18 192 -70 1147 252 101 39 chr4 12491385 12491900 -171796762 + MER21B LTR ERV1 133 679 -184 195 239 43 0 chr4 12491935 12491981 -171796681 - L2 LINE L2 -34 3238 3191 213 238 0 0 chr4 12493024 12493066 -171795596 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 815 236 32 18 chr4 12493310 12493530 -171795132 + MER58A DNA MER1_type 1 223 -1 1153 270 104 40 chr4 12493753 12494400 -171794262 - L2 LINE L2 0 3313 2615 255 320 39 0 chr4 12494857 12494935 -171793727 + MIR SINE MIR 110 190 -72 205 335 77 29 chr4 12495982 12496152 -171792510 + L2 LINE L2 3034 3211 -61 583 255 28 31 chr4 12496662 12496826 -171791836 + MIR SINE MIR 3 164 -61 989 213 84 17 chr4 12496890 12497186 -171791476 + MLT1A2 LTR MaLR 39 354 -20 691 246 54 35 chr4 12497627 12497830 -171790832 + MIR SINE MIR 35 241 -21 268 99 70 0 chr4 12498092 12498149 -171790513 + MER4D LTR ERV1 555 829 -41 334 262 47 9 chr4 12498394 12498501 -171790161 + L2 LINE L2 2965 3075 -197 2007 134 13 19 chr4 12499620 12499904 -171788758 + AluSx SINE Alu 1 284 -28 396 0 0 0 chr4 12499904 12499948 -171788714 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 2007 134 13 19 chr4 12499948 12499976 -171788686 + AluSx SINE Alu 284 311 -1 206 297 249 16 chr4 12500796 12500981 -171787681 - MIR SINE MIR -29 233 6 318 26 0 0 chr4 12501392 12501431 -171787231 + (TG)n Simple_repeat Simple_repeat 2 40 0 374 276 33 30 chr4 12501606 12501772 -171786890 + MIR SINE MIR 19 183 -63 2126 122 10 0 chr4 12503200 12503496 -171785166 - AluSx SINE Alu -13 299 1 301 303 14 15 chr4 12503496 12503626 -171785036 + MIR SINE MIR 64 189 -65 197 116 0 93 chr4 12504771 12504814 -171783848 + MIR SINE MIR 108 146 -116 2268 149 19 8 chr4 12505627 12506002 -171782660 + MLT1B LTR MaLR 5 383 -7 358 258 53 79 chr4 12506614 12506804 -171781858 + MIR SINE MIR 75 259 -3 579 274 139 58 chr4 12507600 12507722 -171780940 + L2 LINE L2 1602 1713 -1601 3280 185 19 36 chr4 12507722 12508119 -171780543 + L1MB5 LINE L1 5499 5880 -294 2269 89 3 0 chr4 12508119 12508423 -171780239 + AluSq SINE Alu 1 305 -8 3280 185 19 36 chr4 12508423 12508713 -171779949 + L1MB5 LINE L1 5880 6174 0 579 274 139 58 chr4 12508713 12508900 -171779762 + L2 LINE L2 1713 1936 -1378 1071 217 104 4 chr4 12509075 12509367 -171779295 - L1MA4 LINE L1 -1 6299 5979 440 321 55 14 chr4 12509765 12509983 -171778679 + MIR SINE MIR 20 246 -16 270 308 33 11 chr4 12510571 12510662 -171778000 - MER5A DNA MER1_type -42 147 55 1856 97 3 74 chr4 12510897 12511292 -171777370 - AluSq SINE Alu 0 313 2 1364 159 64 0 chr4 12511446 12511710 -171776952 + L1MA7 LINE L1 6010 6290 -1 1359 158 7 62 chr4 12511719 12512010 -171776652 + L1MC1 LINE L1 6039 6313 -20 211 349 45 8 chr4 12512146 12512278 -171776384 - MIR SINE MIR -15 247 111 290 277 194 55 chr4 12513364 12513729 -171774933 - L2 LINE L2 -1 3312 2897 191 356 78 0 chr4 12514231 12514346 -171774316 + MIR SINE MIR 85 208 -54 589 295 46 9 chr4 12515912 12516129 -171772533 + MIR SINE MIR 21 245 -17 270 276 0 81 chr4 12516135 12516258 -171772404 - MIR SINE MIR -76 132 19 2492 185 32 32 chr4 12516915 12517123 -171771539 + MLT2B3 LTR ERVL 1 208 -346 202 29 57 0 chr4 12517123 12517158 -171771504 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 2492 185 32 32 chr4 12517158 12517451 -171771211 + MLT2B3 LTR ERVL 207 502 -52 225 0 0 0 chr4 12517451 12517476 -171771186 + (TCCA)n Simple_repeat Simple_repeat 3 27 0 354 341 24 24 chr4 12517585 12517755 -171770907 + MIR SINE MIR 53 222 -40 424 297 118 11 chr4 12517892 12518155 -171770507 - L1ME4a LINE L1 -225 5896 5606 1171 208 140 39 chr4 12518450 12518758 -171769904 - L1MB7 LINE L1 -9 6175 5837 589 222 17 39 chr4 12518844 12519024 -171769638 + MER96B DNA MER1_type? 1 176 -241 1915 122 3 11 chr4 12519024 12519340 -171769322 + AluSx SINE Alu 1 314 0 2188 104 3 3 chr4 12519582 12519891 -171768771 + AluSx SINE Alu 1 309 -3 663 270 38 5 chr4 12520248 12520459 -171768203 - MER58A DNA MER1_type -3 221 4 427 270 107 83 chr4 12520765 12521187 -171767475 + L2 LINE L2 2322 2753 -561 180 176 0 0 chr4 12521220 12521254 -171767408 + GA-rich Low_complexity Low_complexity 3 36 0 298 305 13 93 chr4 12521388 12521539 -171767123 + L2 LINE L2 2905 3043 -229 312 300 204 5 chr4 12521842 12522018 -171766644 - MIR SINE MIR -49 213 1 2208 81 13 7 chr4 12523374 12523681 -171764981 + AluY SINE Alu 1 309 -2 8937 202 27 16 chr4 12523681 12526404 -171762258 + L1MB2 LINE L1 3368 6131 -40 1968 101 0 7 chr4 12526404 12526757 -171761905 - AluSx SINE Alu 0 351 1 8937 202 27 16 chr4 12526757 12526798 -171761864 + L1MB2 LINE L1 6131 6170 -1 1748 133 87 70 chr4 12527270 12527390 -171761272 - THE1C LTR MaLR 0 375 258 2251 109 0 0 chr4 12527390 12527702 -171760960 - AluSx SINE Alu 0 312 1 1748 133 87 70 chr4 12527702 12527950 -171760712 - THE1C LTR MaLR -117 258 1 1669 183 85 40 chr4 12527982 12528429 -171760233 + MLT1C LTR MaLR 1 467 0 1575 239 22 71 chr4 12528695 12529242 -171759420 + MLT2B1 LTR ERVL 1 520 0 512 271 53 16 chr4 12529422 12529610 -171759052 + LTR16A1 LTR ERVL 45 239 -218 890 339 37 3 chr4 12529646 12530024 -171758638 + ERVL LTR ERVL 1908 2298 -3466 725 332 35 12 chr4 12530070 12530389 -171758273 + ERVL LTR ERVL 2266 2591 -2405 257 296 133 56 chr4 12530413 12530805 -171757857 + L2 LINE L2 2244 2665 -649 355 188 129 24 chr4 12530864 12530949 -171757713 + L2 LINE L2 3200 3293 -20 301 295 16 33 chr4 12531323 12531445 -171757217 - L3 LINE CR1 -718 859 740 536 292 81 0 chr4 12531582 12531743 -171756919 + MIR SINE MIR 68 241 -21 4045 201 41 15 chr4 12531766 12532568 -171756094 - MER21B LTR ERV1 -20 843 21 265 275 66 22 chr4 12532570 12532661 -171756001 - MER21B LTR ERV1 -757 106 12 363 326 17 28 chr4 12532875 12533053 -171755609 - L3 LINE CR1 -214 1363 1188 630 276 131 75 chr4 12533062 12533365 -171755297 + L2 LINE L2 2433 2717 -596 2140 122 0 0 chr4 12533365 12533676 -171754986 + AluSx SINE Alu 1 311 -1 630 276 131 75 chr4 12533676 12534119 -171754543 + L2 LINE L2 2717 3219 -94 359 236 0 46 chr4 12534209 12534336 -171754326 + MLT1D LTR MaLR 19 91 -414 1964 70 0 12 chr4 12534336 12534595 -171754067 + AluY SINE Alu 32 287 -24 1327 174 53 91 chr4 12534619 12534701 -171753961 + MLT1D LTR MaLR 120 204 -301 1475 153 53 7 chr4 12534701 12534982 -171753680 + AluJb SINE Alu 11 304 -8 1327 174 53 91 chr4 12534982 12535295 -171753367 + MLT1D LTR MaLR 204 500 -5 244 278 56 0 chr4 12535967 12536039 -171752623 - HsTC2 DNA Tc2 -1810 88 13 902 143 0 0 chr4 12536431 12536564 -171752098 + FLAM_C SINE Alu 1 133 -10 1160 152 35 0 chr4 12536681 12536879 -171751783 - MER20 DNA MER1_type -1 218 14 2587 94 14 0 chr4 12537008 12537358 -171751304 + THE1A LTR MaLR 1 355 0 1607 189 61 66 chr4 12537422 12537450 -171751212 - MLT2D LTR ERVL -8 406 379 231 36 0 0 chr4 12537450 12537478 -171751184 + (TG)n Simple_repeat Simple_repeat 2 29 0 1607 189 61 66 chr4 12537478 12537514 -171751148 - MLT2D LTR ERVL -35 379 344 1629 182 0 7 chr4 12537514 12537810 -171750852 + AluJb SINE Alu 1 294 -18 1607 189 61 66 chr4 12537810 12538152 -171750510 - MLT2D LTR ERVL -70 344 1 367 269 64 35 chr4 12538279 12538450 -171750212 - MER5B DNA MER1_type -2 176 1 566 253 89 0 chr4 12538776 12538922 -171749740 - MIR SINE MIR -16 246 88 539 332 67 39 chr4 12538986 12539417 -171749245 + L1ME LINE L1 4153 4595 -1551 1426 213 138 79 chr4 12539794 12539943 -171748719 + MLT1E LTR MaLR 56 195 -398 1935 116 20 7 chr4 12539943 12540237 -171748425 + AluSx SINE Alu 1 298 -14 1426 213 138 79 chr4 12540237 12540593 -171748069 + MLT1E LTR MaLR 195 591 -2 271 283 26 71 chr4 12540596 12540709 -171747953 - L1ME3A LINE L1 -100 6070 5963 195 100 0 0 chr4 12541025 12541055 -171747607 + (CA)n Simple_repeat Simple_repeat 1 30 0 2213 121 0 0 chr4 12541437 12541750 -171746912 + AluSq SINE Alu 1 313 0 333 320 93 16 chr4 12541831 12542025 -171746637 + L1ME LINE L1 5495 5703 -418 243 238 24 48 chr4 12542240 12542324 -171746338 + MIR SINE MIR 51 132 -130 2170 222 55 18 chr4 12542925 12543470 -171745192 - L1ME3 LINE L1 -20 6142 5578 2144 138 49 42 chr4 12543500 12543828 -171744834 - L1MA5 LINE L1 -2 6298 5965 2081 120 10 0 chr4 12543828 12544136 -171744526 - AluY SINE Alu 0 311 1 2144 138 49 42 chr4 12544136 12544235 -171744427 - L1MA5 LINE L1 -335 5965 5868 1401 142 32 24 chr4 12544235 12544482 -171744180 + L1MA5 LINE L1 5619 5867 -433 982 168 0 0 chr4 12545600 12545761 -171742901 + FRAM SINE Alu 2 162 -14 228 265 10 82 chr4 12545780 12545878 -171742784 + L2 LINE L2 3220 3310 -3 1062 187 111 29 chr4 12545878 12545938 -171742724 + MER34 LTR ERV1 27 81 -461 2250 78 0 41 chr4 12545938 12546258 -171742404 + AluY SINE Alu 1 307 -4 1062 187 111 29 chr4 12546258 12546648 -171742014 + MER34 LTR ERV1 81 542 0 864 144 46 40 chr4 12546821 12546994 -171741668 + MER20 DNA MER1_type 44 217 -2 2024 122 6 10 chr4 12547104 12547416 -171741246 + AluSx SINE Alu 1 311 -1 862 170 0 0 chr4 12547448 12547589 -171741073 + FRAM SINE Alu 1 140 -36 269 225 25 12 chr4 12547898 12547978 -171740684 + GA-rich Low_complexity Low_complexity 2 82 0 32 43 0 0 chr4 12549460 12549506 -171739156 + AT_rich Low_complexity Low_complexity 1 46 0 259 232 73 24 chr4 12550030 12550112 -171738550 + L2 LINE L2 3030 3115 -157 233 326 43 0 chr4 12550247 12550339 -171738323 - MIR SINE MIR -1 261 166 1143 118 16 11 chr4 12550340 12550526 -171738136 + AluSc SINE Alu 111 297 -12 459 286 56 5 chr4 12550910 12551106 -171737556 + LTR33 LTR ERVL 297 502 -19 196 286 0 0 chr4 12551261 12551303 -171737359 - MIR SINE MIR -150 112 71 263 268 61 24 chr4 12551303 12551385 -171737277 + MIR SINE MIR 120 204 -58 579 146 133 26 chr4 12551405 12551556 -171737106 + MER53 DNA DNA 13 179 -10 575 167 108 25 chr4 12551559 12551679 -171736983 - FLAM_A SINE Alu -6 136 7 219 361 17 25 chr4 12551888 12552007 -171736655 - MIR SINE MIR -71 137 20 1684 226 179 16 chr4 12552812 12553459 -171735203 + Charlie1 DNA MER1_type 1978 2730 -31 203 152 0 0 chr4 12553730 12553763 -171734899 + (CA)n Simple_repeat Simple_repeat 1 33 0 352 326 34 7 chr4 12555370 12555517 -171733145 - MIR3 SINE MIR -15 193 43 406 217 147 0 chr4 12557008 12557137 -171731525 - MER20 DNA MER1_type -6 213 66 420 195 150 0 chr4 12558219 12558332 -171730330 + Charlie5 DNA MER1_type 2476 2605 -7 184 361 0 0 chr4 12561573 12561645 -171727017 - MIR SINE MIR -107 155 84 216 276 14 20 chr4 12562119 12562228 -171726434 + MIR SINE MIR 38 144 -64 295 235 12 0 chr4 12562293 12562374 -171726288 - MIR SINE MIR -129 133 52 358 264 241 23 chr4 12562449 12562623 -171726039 + MIR SINE MIR 46 257 -5 215 200 0 0 chr4 12563011 12563051 -171725611 + G-rich Low_complexity Low_complexity 1 40 0 252 265 88 10 chr4 12563987 12564089 -171724573 - MIR SINE MIR -44 218 109 306 357 0 0 chr4 12565289 12565387 -171723275 + MIR SINE MIR 51 148 -60 265 292 56 11 chr4 12567073 12567162 -171721500 + MER5B DNA MER1_type 86 178 0 1918 100 7 0 chr4 12570492 12570763 -171717899 - AluY SINE Alu -38 273 1 1284 225 175 22 chr4 12571200 12571605 -171717057 + MLT1C LTR MaLR 1 467 0 185 169 0 127 chr4 12571659 12571730 -171716932 - MIR SINE MIR -63 145 84 425 327 93 0 chr4 12581577 12581791 -171706871 + MIR SINE MIR 13 246 -16 288 268 111 3 chr4 12583577 12583675 -171704987 - MIR SINE MIR -62 146 57 1113 201 186 52 chr4 12583675 12584024 -171704638 + MSTD LTR MaLR 1 396 0 288 268 111 3 chr4 12584024 12584067 -171704595 - MIR SINE MIR -151 57 20 216 97 0 0 chr4 12584294 12584325 -171704337 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 513 32 0 0 chr4 12584618 12584681 -171703981 + (CA)n Simple_repeat Simple_repeat 1 63 0 451 105 232 17 chr4 12584863 12584984 -171703678 + MER30 DNA MER1_type 1 154 -76 1795 32 9 0 chr4 12585158 12585379 -171703283 - AluY SINE Alu -88 223 1 274 45 0 0 chr4 12586836 12586880 -171701782 - AluY SINE Alu 0 300 257 1830 54 0 0 chr4 12586880 12587101 -171701561 - AluY SINE Alu -90 221 1 381 58 0 0 chr4 12587138 12587190 -171701472 + (CA)n Simple_repeat Simple_repeat 2 53 0 338 290 65 16 chr4 12588654 12588778 -171699884 + MIR SINE MIR 23 152 -110 424 172 9 126 chr4 12589196 12589411 -171699251 - AluSp SINE Alu -3 310 121 431 265 115 60 chr4 12590298 12590532 -171698130 - MIR SINE MIR 0 262 16 30 0 0 0 chr4 12591634 12591664 -171696998 + AT_rich Low_complexity Low_complexity 1 30 0 297 315 36 30 chr4 12591795 12591960 -171696702 + MIR SINE MIR 97 262 0 346 354 0 54 chr4 12595086 12595233 -171693429 - L1ME LINE L1 -425 5696 5558 4231 225 53 35 chr4 12598482 12600035 -171688627 + L1 LINE L1 2273 3853 -2293 21 36 0 0 chr4 12600305 12600333 -171688329 + AT_rich Low_complexity Low_complexity 1 28 0 413 205 0 13 chr4 12600618 12600696 -171687966 + L1M3e LINE L1 189 265 -6765 1998 239 127 49 chr4 12600701 12601987 -171686675 + L1M3e LINE L1 1110 2490 -4547 21 0 0 0 chr4 12602899 12602920 -171685742 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chr4 12603088 12603128 -171685534 + AT_rich Low_complexity Low_complexity 1 40 0 1310 219 138 79 chr4 12603537 12603686 -171684976 + MLT1E LTR MaLR 56 195 -398 1938 122 20 7 chr4 12603686 12603982 -171684680 + AluSx SINE Alu 1 300 -12 1310 219 138 79 chr4 12603982 12604338 -171684324 + MLT1E LTR MaLR 195 591 -2 23 0 0 0 chr4 12604482 12604505 -171684157 + AT_rich Low_complexity Low_complexity 1 23 0 31 0 0 0 chr4 12604729 12604760 -171683902 + AT_rich Low_complexity Low_complexity 1 31 0 689 178 46 46 chr4 12605711 12605885 -171682777 + MER20 DNA MER1_type 44 217 -2 1049 115 14 0 chr4 12605995 12606143 -171682519 + AluSq/x SINE Alu 1 150 -163 2552 241 58 22 chr4 12607833 12608619 -171680043 + L1ME1 LINE L1 5348 6162 -4 208 310 62 18 chr4 12610744 12610857 -171677805 + L2 LINE L2 2994 3111 -161 345 263 72 40 chr4 12611100 12611252 -171677410 - MIR SINE MIR -70 192 36 240 205 55 142 chr4 12612498 12612625 -171676037 + L2 LINE L2 2937 3052 -220 241 226 24 119 chr4 12612831 12612915 -171675747 - MER20 DNA MER1_type -143 76 1 248 207 52 0 chr4 12614081 12614139 -171674523 - MER20 DNA MER1_type -17 202 142 884 298 127 36 chr4 12614768 12615062 -171673600 - L2 LINE L2 -5 3308 3042 1838 157 10 19 chr4 12615062 12615374 -171673288 + AluSx SINE Alu 1 309 -3 884 298 127 36 chr4 12615374 12615923 -171672739 - L2 LINE L2 -271 3042 2316 219 184 0 0 chr4 12616939 12616977 -171671685 - MIR SINE MIR -60 148 111 263 229 27 64 chr4 12617628 12617717 -171670945 - MIR SINE MIR -41 167 80 599 111 0 0 chr4 12617783 12617873 -171670789 - 5S rRNA rRNA -31 90 1 42 100 0 0 chr4 12618493 12618633 -171670029 + GC_rich Low_complexity Low_complexity 1 140 0 23 0 0 0 chr4 12618972 12618995 -171669667 + GC_rich Low_complexity Low_complexity 1 23 0 494 185 127 25 chr4 12621768 12621925 -171666737 - LTR32 LTR ERVL 0 471 299 1106 214 139 8 chr4 12625921 12626281 -171662381 - MLT1C LTR MaLR 0 467 61 7154 74 46 2 chr4 12629365 12630293 -171658369 - LTR5 LTR ERVK 0 969 1 248 132 0 0 chr4 12631064 12631102 -171657560 + MLT2A1 LTR ERVL 342 379 -65 * 1735 93 81 51 chr4 12631098 12631431 -171657231 - MLT2A1 LTR ERVL -101 343 1 345 211 40 0 chr4 12639544 12639620 -171649042 - L1MCa LINE L1 -5051 1513 1435 269 194 222 28 chr4 12639707 12639815 -171648847 - L1MCa LINE L1 -5597 448 320 446 244 224 10 chr4 12640166 12640658 -171648004 - L1MB3 LINE L1 -8 6175 5583 2000 121 104 27 chr4 12644578 12644990 -171643672 - MLT2A1 LTR ERVL 0 444 1 1249 204 67 30 chr4 12648359 12648628 -171640034 + AluSx SINE Alu 5 283 -29 629 227 89 39 chr4 12650233 12650436 -171638226 - MER20 DNA MER1_type 0 219 7 1631 184 117 34 chr4 12671447 12671919 -171616743 - MER9 LTR ERVK 0 511 1 1463 217 93 15 chr4 12671922 12672497 -171616165 - HERVK9 LTR ERVK -3 7352 5635 339 239 100 80 chr4 12672498 12672749 -171615913 - HERVK9 LTR ERVK -686 4576 4321 12268 165 55 15 chr4 12672840 12675533 -171613129 - HERVK9 LTR ERVK -281 5635 3042 9648 163 47 17 chr4 12675531 12677496 -171611166 - HERVK9 LTR ERVK -4125 1791 1 * 1355 209 123 36 chr4 12677496 12677966 -171610696 - MER9 LTR ERVK 0 511 1 354 256 131 50 chr4 12680141 12680301 -171608361 - MER20 DNA MER1_type -42 177 5 274 310 60 25 chr4 12681668 12681868 -171606794 - ERVL LTR ERVL -2988 2776 2570 180 0 0 0 chr4 12683877 12683897 -171604765 + (T)n Simple_repeat Simple_repeat 1 20 0 1868 216 90 5 chr4 12685891 12686335 -171602327 - L1PA15 LINE L1 -16 6149 5668 2116 185 40 26 chr4 12686336 12686790 -171601872 - MER66B LTR ERV1 0 486 27 988 149 113 32 chr4 12686796 12687017 -171601645 - L1PA15 LINE L1 -494 5671 5433 489 262 143 6 chr4 12691345 12691513 -171597149 - MER20 DNA MER1_type -7 212 22 571 301 108 34 chr4 12691848 12692441 -171596221 - ERVL LTR ERVL -1708 3946 3336 433 276 140 37 chr4 12692767 12693209 -171595453 - ERVL LTR ERVL -2577 2908 2409 189 0 0 0 chr4 12693257 12693278 -171595384 + (TA)n Simple_repeat Simple_repeat 1 21 0 491 285 108 24 chr4 12697878 12698166 -171590496 - LTR16A LTR ERVL -5 445 134 317 89 0 0 chr4 12699819 12699864 -171588798 - L1P4 LINE L1 -408 5760 5716 2491 148 81 53 chr4 12699878 12700383 -171588279 - LTR25 LTR ERV1 0 794 276 6384 77 45 4 chr4 12700383 12701404 -171587258 - L1PA7 LINE L1 -23 6131 5076 1379 157 86 8 chr4 12701404 12701638 -171587024 - LTR25 LTR ERV1 -506 288 29 213 39 0 0 chr4 12701638 12701664 -171586998 + (TTCCC)n Simple_repeat Simple_repeat 3 28 0 1379 157 86 8 chr4 12701664 12701696 -171586966 - LTR25 LTR ERV1 -765 29 1 226 171 0 0 chr4 12701698 12701733 -171586929 - L1P4 LINE L1 -463 5702 5668 972 229 366 6 chr4 12701734 12702084 -171586578 - MER66A LTR ERV1 0 478 3 947 194 107 0 chr4 12702085 12702301 -171586361 - L1P4 LINE L1 -494 5671 5433 354 235 168 7 chr4 12706059 12706208 -171582454 - MER20 DNA MER1_type -37 182 10 291 295 77 32 chr4 12710152 12710318 -171578344 - ERVL LTR ERVL -2236 3418 3265 221 0 35 0 chr4 12714616 12714645 -171574017 + (TA)n Simple_repeat Simple_repeat 2 31 0 289 335 51 23 chr4 12716182 12716358 -171572304 - LTR16A LTR ERVL -34 416 236 3819 94 69 19 chr4 12716698 12717677 -171570985 - MER11A LTR ERVK -4 1262 1 527 244 85 30 chr4 12720778 12720979 -171567683 - ERVL LTR ERVL -892 4638 4427 416 304 45 93 chr4 12720978 12721290 -171567372 - ERVL LTR ERVL -1240 4290 3994 * 385 286 76 8 chr4 12721295 12721414 -171567248 - ERVL LTR ERVL -1648 3882 3756 359 277 42 38 chr4 12721465 12721675 -171566987 - ERVL LTR ERVL -1338 3428 1490 633 260 108 50 chr4 12723391 12723733 -171564929 - MLT1A1 LTR MaLR -3 362 1 680 243 112 29 chr4 12724686 12724962 -171563700 - LTR16A LTR ERVL -51 399 101 583 353 78 20 chr4 12725853 12726643 -171562019 - ERVL LTR ERVL -1167 4597 3423 391 319 86 5 chr4 12726764 12726974 -171561688 - ERVL LTR ERVL -2211 3553 3327 536 317 91 5 chr4 12727121 12727342 -171561320 - LTR16A LTR ERVL -159 291 52 251 322 16 16 chr4 12731068 12731189 -171557473 - L2 LINE L2 -1216 2098 1978 1038 296 98 10 chr4 12731635 12732044 -171556618 + LTR16A LTR ERVL 1 445 -5 294 216 0 0 chr4 12732540 12732591 -171556071 + ERVL LTR ERVL 3406 3456 -2308 258 296 80 0 chr4 12732585 12732673 -171555989 - ERVL LTR ERVL -2350 3414 3320 * 374 307 83 21 chr4 12732767 12732959 -171555703 - ERVL LTR ERVL -2582 3182 2979 373 267 97 28 chr4 12733094 12733270 -171555392 - ERVL LTR ERVL -2957 2807 2620 423 112 209 45 chr4 12733583 12733717 -171554945 - L1MB1 LINE L1 0 6168 6013 817 214 128 95 chr4 12734800 12735137 -171553525 - MLT1A1 LTR MaLR -17 348 1 988 237 169 11 chr4 12735374 12735652 -171553010 - MLT2B2 LTR ERVL -2 513 192 2371 240 186 44 chr4 12736475 12737709 -171550953 - L1M4 LINE L1 -5120 1422 14 1621 141 101 26 chr4 12739311 12739816 -171548846 - MLT2A2 LTR ERVL 0 554 1 231 287 0 23 chr4 12741279 12741366 -171547296 - MLT1E2 LTR MaLR -537 89 5 242 283 40 50 chr4 12742029 12742128 -171546534 + MSTD LTR MaLR 204 301 -95 1605 199 99 67 chr4 12742645 12743392 -171545270 - MER4C LTR ERV1 0 667 34 340 209 0 47 chr4 12743699 12743785 -171544877 - MER4C LTR ERV1 -383 82 1 2942 124 44 0 chr4 12743931 12744365 -171544297 - MLT2A2 LTR ERVL 0 453 1 365 295 122 38 chr4 12745243 12745694 -171542968 - MLT1D LTR MaLR -10 495 7 2874 77 64 5 chr4 12746989 12747381 -171541281 - LTR8 LTR ERV1 -3 688 274 539 96 72 0 chr4 12747380 12747463 -171541199 - LTR8 LTR ERV1 -602 89 1 * 649 252 81 14 chr4 12747695 12747905 -171540757 - PABL_B LTR ERV1 0 667 444 225 301 69 94 chr4 12748173 12748376 -171540286 - PABL_B LTR ERV1 -469 198 1 1255 249 129 12 chr4 12748587 12749013 -171539649 - MER31A LTR ERV1 -9 476 1 1938 178 97 7 chr4 12749083 12749504 -171539158 - LOR1b LTR ERV1 0 461 3 6345 65 50 0 chr4 12750205 12751279 -171537383 - L1PA7 LINE L1 -1 6153 5042 225 88 0 0 chr4 12751279 12751313 -171537349 + L1PA7 LINE L1 4976 5009 -1137 503 96 106 39 chr4 12752307 12752411 -171536251 - L1P LINE L1 -945 5201 5091 1880 156 71 6 chr4 12755052 12755404 -171533258 - THE1C LTR MaLR 0 375 1 783 181 0 0 chr4 12767563 12767701 -171520961 + L1PA8 LINE L1 6011 6148 -24 598 244 62 12 chr4 12769029 12769189 -171519473 - MER31A LTR ERV1 -13 472 305 652 171 79 7 chr4 12769192 12769332 -171519330 - MER31A LTR ERV1 -335 150 1 2536 191 71 12 chr4 12777221 12777797 -171510865 - LTR38B LTR ERV1 0 610 1 1160 89 0 4 chr4 12781391 12781617 -171507045 - L1PA8 LINE L1 -1 6171 5869 5989 24 3 0 chr4 12789604 12790283 -171498379 - L1PA3 LINE L1 -4 6151 5471 1132 249 63 9 chr4 12791039 12791372 -171497290 - MER31A LTR ERV1 -134 351 1 186 128 0 0 chr4 12792496 12792535 -171496127 + (TA)n Simple_repeat Simple_repeat 1 39 0 373 222 128 128 chr4 12793721 12794127 -171494535 - MLT1D LTR MaLR -87 418 13 234 0 0 0 chr4 12794207 12794233 -171494429 + (TGGGGG)n Simple_repeat Simple_repeat 2 27 0 3329 101 13 0 chr4 12796200 12796654 -171492008 + LTR46 LTR ERV1 1 460 0 1201 189 231 37 chr4 12799901 12800329 -171488333 - MER9 LTR ERVK 0 511 1 23267 174 41 19 chr4 12800329 12805458 -171483204 - HERVK9 LTR ERVK 0 7316 1626 3091 183 40 36 chr4 12805454 12806353 -171482309 - HERVK9 LTR ERVK -5249 667 1 * 1706 204 69 35 chr4 12806353 12806844 -171481818 - MER9 LTR ERVK 0 511 4 2089 49 42 0 chr4 12811840 12812105 -171476557 + L1PA5 LINE L1 5879 6154 0 1486 197 141 5 chr4 12815373 12815749 -171472913 + MSTA LTR MaLR 1 427 -1 1778 187 114 3 chr4 12817101 12817486 -171471176 + MSTA LTR MaLR 1 428 0 1185 168 59 35 chr4 12819497 12819783 -171468879 - L1PB4 LINE L1 -5 6151 5859 417 276 104 8 chr4 12822197 12822331 -171466331 - MLT1D LTR MaLR -40 465 319 3278 158 50 10 chr4 12825196 12825811 -171462851 + MER51C LTR ERV1 1 640 0 988 176 10 10 chr4 12827259 12827452 -171461210 - AluSg/x SINE Alu 0 312 120 948 28 0 0 chr4 12827452 12827560 -171461102 - L1PA3 LINE L1 -3 6152 6045 1653 112 145 0 chr4 12827560 12827809 -171460853 - AluSx SINE Alu -27 285 1 534 242 113 38 chr4 12829380 12829566 -171459096 + MER2 DNA MER2_type 67 266 -79 7238 47 9 0 chr4 12834425 12835608 -171453054 - L1PA4 LINE L1 0 6155 4963 8335 27 9 1 chr4 12835608 12836594 -171452068 + L1PA4 LINE L1 3953 4946 -1200 593 287 61 72 chr4 12836594 12837051 -171451611 - MLT1D LTR MaLR -48 457 6 344 263 74 115 chr4 12839208 12839722 -171448940 - MLT1D LTR MaLR -8 497 5 241 338 28 21 chr4 12839734 12839879 -171448783 - LTR16C LTR ERVL -60 431 286 5709 90 42 1 chr4 12843289 12844099 -171444563 + L1PA8 LINE L1 5327 6169 -3 447 259 96 81 chr4 12850791 12851262 -171437400 - MLT1D LTR MaLR 0 505 28 229 303 49 42 chr4 12851293 12851435 -171437227 - LTR16C LTR ERVL -60 431 289 2236 84 48 0 chr4 12852089 12852399 -171436263 - L1PA7 LINE L1 0 6154 5830 1214 207 39 0 chr4 12855483 12855739 -171432923 + MER2 DNA MER2_type 2 267 -78 12914 121 73 11 chr4 12856056 12858309 -171430353 - L1PBa LINE L1 -3836 3026 571 422 271 118 14 chr4 12858315 12858459 -171430203 + MER50 LTR ERV1 10 168 -566 3060 130 20 130 chr4 12858595 12859255 -171429407 - LTR18B LTR ERVL -27 587 1 1026 228 128 9 chr4 12859255 12859573 -171429089 + MER50 LTR ERV1 293 649 -85 214 303 57 33 chr4 13059618 13059740 -171228922 + MIR SINE MIR 47 171 -91 22 35 0 0 chr4 13060000 13060029 -171228633 + AT_rich Low_complexity Low_complexity 1 29 0 184 253 36 60 chr4 13060140 13060223 -171228439 - MIR SINE MIR -77 185 105 1955 112 87 0 chr4 13061295 13061581 -171227081 - AluSq SINE Alu -2 311 1 373 284 103 9 chr4 13061663 13061779 -171226883 + L2 LINE L2 3138 3264 -8 1683 143 84 42 chr4 13062353 13062709 -171225953 - THE1C LTR MaLR -4 371 1 192 77 0 0 chr4 13062746 13062772 -171225890 + (T)n Simple_repeat Simple_repeat 1 26 0 893 333 67 12 chr4 13063946 13064363 -171224299 - HERV16 LTR ERVL -4219 777 338 779 355 35 10 chr4 13064489 13064883 -171223779 + HERV16 LTR ERVL 2541 2944 -2052 1514 268 53 46 chr4 13065375 13066492 -171222170 + L1MEc LINE L1 1559 2650 -3565 2159 110 0 3 chr4 13066614 13066913 -171221749 - AluY SINE Alu -13 298 1 831 233 65 4 chr4 13066914 13067146 -171221516 + L1M4 LINE L1 4531 4776 -1370 1459 79 5 0 chr4 13067271 13067461 -171221201 + AluY SINE Alu 115 305 -6 280 364 45 0 chr4 13067504 13067636 -171221026 - L2 LINE L2 -1 3271 3134 519 33 0 0 chr4 13067855 13067916 -171220746 - THE1C LTR MaLR -46 329 269 1948 281 74 42 chr4 13067918 13068947 -171219715 + L1MEc LINE L1 407 1468 -5139 392 340 65 56 chr4 13068949 13069287 -171219375 + L1MEc LINE L1 1285 1625 -4803 22 0 0 0 chr4 13069287 13069309 -171219353 + AT_rich Low_complexity Low_complexity 1 22 0 3068 160 13 0 chr4 13070139 13070676 -171217986 + L1PA16 LINE L1 5622 6165 -1 22 0 0 0 chr4 13070676 13070698 -171217964 + AT_rich Low_complexity Low_complexity 1 22 0 266 227 121 0 chr4 13070704 13070770 -171217892 - LTR16B LTR ERVL -390 74 1 2184 101 10 10 chr4 13070808 13071116 -171217546 + AluY SINE Alu 1 308 -3 403 333 115 26 chr4 13071118 13071352 -171217310 - LTR16C LTR ERVL -157 334 80 429 337 29 12 chr4 13072017 13072189 -171216473 - MIR3 SINE MIR -4 204 30 345 288 72 40 chr4 13072297 13072422 -171216240 + MIR SINE MIR 15 143 -119 182 250 23 0 chr4 13072520 13072564 -171216098 + MIR SINE MIR 205 249 -13 335 252 200 0 chr4 13072582 13072697 -171215965 - MIR SINE MIR -78 184 47 3995 79 2 9 chr4 13072759 13073304 -171215358 - L1PA10 LINE L1 -6 6162 5622 306 246 132 0 chr4 13073609 13073723 -171214939 + L1MEc LINE L1 1935 2063 -4363 21 57 0 0 chr4 13073813 13073848 -171214814 + AT_rich Low_complexity Low_complexity 1 35 0 393 267 32 43 chr4 13074288 13074475 -171214187 - L1ME LINE L1 -363 5758 5574 501 289 166 5 chr4 13076217 13076428 -171212234 + L2 LINE L2 2658 2902 -412 971 234 67 60 chr4 13076428 13076710 -171211952 + MLT2B3 LTR ERVL 270 553 -1 190 252 79 94 chr4 13077240 13077290 -171211372 - MIR SINE MIR -21 241 192 869 262 18 22 chr4 13077290 13077515 -171211147 - MER58A DNA MER1_type 0 224 1 190 252 79 94 chr4 13077515 13077591 -171211071 - MIR SINE MIR -70 192 117 1131 206 73 15 chr4 13079170 13079442 -171209220 + MLT1A2 LTR MaLR 71 358 -16 330 291 21 29 chr4 13079460 13079759 -171208903 - Charlie7 DNA MER1_type -1992 620 270 301 263 61 35 chr4 13079985 13080099 -171208563 - L1MCa LINE L1 -5101 1325 1209 240 196 36 27 chr4 13080148 13080260 -171208402 + (TA)n Simple_repeat Simple_repeat 2 114 0 47 61 0 0 chr4 13080263 13080345 -171208317 + AT_rich Low_complexity Low_complexity 1 82 0 272 265 29 0 chr4 13080454 13080556 -171208106 - L1MCa LINE L1 -5223 1384 1280 203 196 22 54 chr4 13080938 13081030 -171207632 + (TAAA)n Simple_repeat Simple_repeat 2 90 0 383 276 96 34 chr4 13081233 13081472 -171207190 + L1ME4a LINE L1 5644 5897 -224 311 345 25 8 chr4 13081632 13081751 -171206911 - MIR SINE MIR -110 152 32 352 122 0 0 chr4 13081904 13081953 -171206709 + MLT1A2 LTR MaLR 1 49 -325 7485 208 28 48 chr4 13083870 13086098 -171202564 + L1PA10 LINE L1 8 2190 -4271 1724 162 39 33 chr4 13086103 13086437 -171202225 + THE1B LTR MaLR 1 336 -28 293 35 0 0 chr4 13086442 13086487 -171202175 - L1PA3 LINE L1 -3 6152 6108 20145 140 14 8 chr4 13086512 13090796 -171197866 + L1PA10 LINE L1 2191 6483 0 222 198 0 66 chr4 13090870 13090961 -171197701 + (TA)n Simple_repeat Simple_repeat 1 85 0 210 156 0 0 chr4 13090986 13091031 -171197631 + (CA)n Simple_repeat Simple_repeat 2 46 0 1267 231 144 32 chr4 13091036 13091382 -171197280 - MLT2B1 LTR ERVL -69 451 67 2298 137 28 17 chr4 13091392 13091750 -171196912 - THE1B LTR MaLR 0 364 3 2187 129 42 28 chr4 13091938 13092102 -171196560 - THE1B LTR MaLR -2 362 202 207 0 0 0 chr4 13092102 13092125 -171196537 + (GA)n Simple_repeat Simple_repeat 2 24 0 2187 129 42 28 chr4 13092125 13092317 -171196345 - THE1B LTR MaLR -162 202 1 732 290 100 48 chr4 13092332 13092773 -171195889 + LTR16B LTR ERVL 1 464 0 280 288 85 79 chr4 13092773 13092950 -171195712 - MIR SINE MIR -77 185 8 345 313 9 17 chr4 13092996 13093111 -171195551 + L1MEd LINE L1 948 1061 -5058 2262 97 0 3 chr4 13093205 13093504 -171195158 - AluY SINE Alu -13 298 1 670 221 39 25 chr4 13094281 13094485 -171194177 - L1MB8 LINE L1 -1 6177 5971 198 171 0 0 chr4 13094941 13094982 -171193680 + (TTA)n Simple_repeat Simple_repeat 2 42 0 1020 218 14 9 chr4 13095575 13095791 -171192871 + MER20 DNA MER1_type 2 218 -1 1024 258 72 39 chr4 13095851 13096212 -171192450 + MLT1F LTR MaLR 170 542 0 452 304 88 44 chr4 13097923 13098219 -171190443 + MLT1I LTR MaLR 82 390 -19 180 0 0 0 chr4 13098333 13098353 -171190309 + (CA)n Simple_repeat Simple_repeat 1 20 0 3573 204 20 34 chr4 13099088 13099225 -171189437 - L1MB7 LINE L1 -28 6156 6019 2077 134 3 3 chr4 13099225 13099530 -171189132 + AluSx SINE Alu 1 305 -7 3573 204 20 34 chr4 13099530 13100271 -171188391 - L1MB7 LINE L1 -165 6019 5290 571 195 32 8 chr4 13100281 13100404 -171188258 - L1MC1 LINE L1 0 6333 6208 249 159 0 0 chr4 13101409 13101453 -171187209 + CT-rich Low_complexity Low_complexity 2 45 0 21 0 0 0 chr4 13101612 13101633 -171187029 + AT_rich Low_complexity Low_complexity 1 21 0 2167 107 17 0 chr4 13101835 13102135 -171186527 - AluSc SINE Alu -4 305 1 1331 306 8 3 chr4 13102354 13102739 -171185923 - MER69 DNA AcHobo -783 443 57 439 304 15 15 chr4 13103711 13103846 -171184816 + MIR SINE MIR 17 151 -111 1366 248 34 6 chr4 13103881 13104236 -171184426 + MLT1A1 LTR MaLR 1 365 0 182 286 0 0 chr4 13104247 13104296 -171184366 + MIR SINE MIR 166 214 -48 210 171 0 0 chr4 13104323 13104364 -171184298 + (CATA)n Simple_repeat Simple_repeat 3 43 0 482 277 79 39 chr4 13105220 13105508 -171183154 - MLT1H LTR MaLR -120 289 23 188 229 83 0 chr4 13105673 13105721 -171182941 + L2 LINE L2 3261 3312 -1 24 0 0 0 chr4 13106251 13106275 -171182387 + AT_rich Low_complexity Low_complexity 1 24 0 226 133 0 0 chr4 13106665 13106695 -171181967 + Tigger3(Golem) DNA MER2_type 2997 3026 -3 2278 118 9 3 chr4 13107698 13108033 -171180629 + THE1C LTR MaLR 1 360 -36 292 385 42 53 chr4 13108237 13108438 -171180224 - L2 LINE L2 -251 3062 2863 2087 175 44 7 chr4 13108438 13108849 -171179813 - MSTB LTR MaLR 0 426 1 292 385 42 53 chr4 13108849 13108909 -171179753 - L2 LINE L2 -450 2863 2804 193 395 37 9 chr4 13109284 13109393 -171179269 - L2 LINE L2 -5 3267 3156 372 220 11 11 chr4 13112734 13112825 -171175837 - MLT1C LTR MaLR -337 130 40 241 370 22 0 chr4 13113019 13113111 -171175551 - L2 LINE L2 -6 3266 3173 1641 234 84 25 chr4 13113435 13113910 -171174752 - MLT1D LTR MaLR 0 505 3 21 100 0 0 chr4 13114297 13114367 -171174295 + AT_rich Low_complexity Low_complexity 1 70 0 215 197 33 0 chr4 13114442 13114503 -171174159 + (TA)n Simple_repeat Simple_repeat 2 64 0 337 307 34 58 chr4 13114646 13114851 -171173811 - MIR SINE MIR -50 212 13 10042 30 1 0 chr4 13115289 13117261 -171171401 - L1PA3 LINE L1 0 6155 4182 23 0 0 0 chr4 13117868 13117891 -171170771 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr4 13118190 13118215 -171170447 + AT_rich Low_complexity Low_complexity 1 25 0 811 270 81 46 chr4 13118354 13118699 -171169963 + MLT1I LTR MaLR 13 369 -40 280 155 0 86 chr4 13118873 13118931 -171169731 + AluJo SINE Alu 3 55 -247 2004 185 9 0 chr4 13118931 13119261 -171169401 - MER61A LTR ERV1 0 343 11 925 201 12 85 chr4 13119275 13119365 -171169297 + AluJo SINE Alu 56 151 -161 2136 106 10 3 chr4 13119365 13119658 -171169004 + AluSq SINE Alu 1 295 -18 925 201 12 85 chr4 13119658 13119826 -171168836 + AluJo SINE Alu 151 295 -17 1819 134 52 71 chr4 13120329 13120710 -171167952 - THE1C LTR MaLR 0 375 2 380 274 143 34 chr4 13121087 13121262 -171167400 - MIR SINE MIR -21 241 48 242 222 0 25 chr4 13121467 13121548 -171167114 + (CATATA)n Simple_repeat Simple_repeat 6 84 0 709 149 16 32 chr4 13121574 13121875 -171166787 + (TA)n Simple_repeat Simple_repeat 1 296 0 543 160 22 28 chr4 13121916 13122097 -171166565 + (TA)n Simple_repeat Simple_repeat 1 180 0 292 335 112 29 chr4 13122194 13122436 -171166226 - MLT1I LTR MaLR -49 360 99 239 336 36 7 chr4 13123076 13123216 -171165446 - L3b LINE CR1 -323 1260 1117 1442 209 59 0 chr4 13123677 13124112 -171164550 - MLT2B1 LTR ERVL -2 513 2 520 328 68 28 chr4 13124206 13124456 -171164206 + MIR SINE MIR 2 261 -1 28 0 0 0 chr4 13124520 13124548 -171164114 + AT_rich Low_complexity Low_complexity 1 28 0 2356 145 3 6 chr4 13124568 13124933 -171163729 - THE1B LTR MaLR 0 364 1 903 206 225 39 chr4 13125123 13125483 -171163179 + MSTC LTR MaLR 1 427 -1 232 224 30 0 chr4 13126990 13127057 -171161605 - MER116 DNA Mariner -11 69 1 24 0 0 0 chr4 13127601 13127625 -171161037 + AT_rich Low_complexity Low_complexity 1 24 0 1262 244 50 17 chr4 13128006 13128602 -171160060 + L1ME1 LINE L1 4865 5483 -683 1152 246 41 60 chr4 13128607 13129094 -171159568 + L1ME1 LINE L1 5683 6160 -6 437 288 151 58 chr4 13129659 13129999 -171158663 + L1ME LINE L1 5347 5727 -394 1989 117 28 3 chr4 13129999 13130289 -171158373 - AluSq SINE Alu -16 297 1 437 288 151 58 chr4 13130289 13130326 -171158336 + L1ME LINE L1 5727 5759 -362 210 286 71 0 chr4 13132029 13132113 -171156549 + MIR SINE MIR 74 163 -99 633 249 108 90 chr4 13132726 13133368 -171155294 - HAL1 LINE L1 0 2507 1855 3311 129 6 9 chr4 13133421 13133949 -171154713 - L1PA13 LINE L1 -2 6812 6287 18221 204 17 12 chr4 13133952 13138461 -171150201 - L1PA13 LINE L1 -858 5939 1396 4620 261 107 3 chr4 13138464 13139604 -171149058 - L1PA13 LINE L1 -5529 1258 1 308 244 0 51 chr4 13139607 13139685 -171148977 - HAL1 LINE L1 -710 1797 1724 2208 217 24 89 chr4 13139686 13140271 -171148391 + MLT2B3 LTR ERVL 8 554 0 357 333 22 14 chr4 13140872 13141010 -171147652 + MIR SINE MIR 77 215 -47 471 261 15 15 chr4 13141903 13142037 -171146625 + L2 LINE L2 2326 2459 -855 2083 120 65 29 chr4 13142037 13142388 -171146274 + THE1B LTR MaLR 1 364 0 232 224 41 0 chr4 13142411 13142460 -171146202 - AluJ/monomer SINE Alu -12 289 239 350 276 92 11 chr4 13142760 13142945 -171145717 - L1ME4a LINE L1 -214 5907 5708 331 279 69 20 chr4 13144909 13145113 -171143549 + L1ME4a LINE L1 5678 5891 -230 449 271 71 29 chr4 13145195 13145365 -171143297 - MER5A DNA MER1_type -6 183 7 239 261 37 15 chr4 13145385 13145519 -171143143 + (TA)n Simple_repeat Simple_repeat 2 138 0 315 352 56 12 chr4 13146203 13146365 -171142297 + MIR3 SINE MIR 4 172 -36 269 308 39 0 chr4 13147242 13147320 -171141342 + MIR SINE MIR 34 114 -148 26 30 0 0 chr4 13147705 13147738 -171140924 + AT_rich Low_complexity Low_complexity 1 33 0 333 198 0 0 chr4 13147841 13147922 -171140740 + (TA)n Simple_repeat Simple_repeat 2 82 0 210 332 32 63 chr4 13148011 13148201 -171140461 - L3 LINE CR1 -263 1314 1131 892 219 63 0 chr4 13148490 13148695 -171139967 - MER58A DNA MER1_type -1 223 6 878 201 7 0 chr4 13148767 13148916 -171139746 - FRAM SINE Alu -16 150 1 315 122 0 0 chr4 13148978 13149027 -171139635 + (TC)n Simple_repeat Simple_repeat 1 49 0 1414 213 75 24 chr4 13149355 13149731 -171138931 - LTR52 LTR ERVL -19 402 8 22 0 0 0 chr4 13150493 13150515 -171138147 + AT_rich Low_complexity Low_complexity 1 22 0 273 339 65 48 chr4 13151533 13151719 -171136943 - MIR3 SINE MIR -6 202 14 22 35 0 0 chr4 13151851 13151880 -171136782 + AT_rich Low_complexity Low_complexity 1 29 0 611 316 68 12 chr4 13153623 13154036 -171134626 + MLT1H LTR MaLR 84 549 0 2105 172 53 7 chr4 13154117 13154530 -171134132 - MSTB1 LTR MaLR 0 432 1 196 396 34 22 chr4 13155304 13155518 -171133144 - L2 LINE L2 -261 3011 2797 210 361 19 28 chr4 13156403 13156511 -171132151 - MIR3 SINE MIR -96 112 6 836 234 83 19 chr4 13156590 13156795 -171131867 - MER20 DNA MER1_type -1 218 1 1818 158 13 3 chr4 13156796 13157094 -171131568 + AluJo SINE Alu 1 301 -11 278 359 77 24 chr4 13158018 13158188 -171130474 - MIR SINE MIR -71 191 13 296 323 105 15 chr4 13159602 13159735 -171128927 + MIR3 SINE MIR 19 163 -45 268 411 43 12 chr4 13160713 13160876 -171127786 - MIR SINE MIR -75 187 20 980 208 23 37 chr4 13161131 13161347 -171127315 + MER20 DNA MER1_type 7 219 0 429 317 32 37 chr4 13161362 13161608 -171127054 + L1M4 LINE L1 4352 4596 -1550 1112 291 112 58 chr4 13161676 13162471 -171126191 - L2 LINE L2 -473 2841 2004 22 0 0 0 chr4 13162529 13162551 -171126111 + AT_rich Low_complexity Low_complexity 1 22 0 26 64 0 0 chr4 13162804 13162851 -171125811 + AT_rich Low_complexity Low_complexity 1 47 0 783 209 147 0 chr4 13163943 13164106 -171124556 + MER5A DNA MER1_type 3 189 0 799 235 76 46 chr4 13165894 13166132 -171122530 - MIR SINE MIR 0 262 18 235 156 22 0 chr4 13166143 13166188 -171122474 + MIR SINE MIR 128 173 -89 309 242 111 10 chr4 13166782 13166881 -171121781 - MIR SINE MIR -32 230 122 1419 142 7 37 chr4 13168084 13168517 -171120145 + pTR5 LTR ERV1 742 1210 -1228 219 317 135 48 chr4 13169959 13170167 -171118495 + L2 LINE L2 2633 2858 -456 4311 89 26 0 chr4 13170361 13170966 -171117696 + L1PA10 LINE L1 5546 6166 -2 510 293 30 23 chr4 13171170 13171303 -171117359 + L2 LINE L2 3139 3272 0 498 318 24 61 chr4 13171571 13171901 -171116761 + MLT1K LTR MaLR 254 571 -17 197 286 0 0 chr4 13171975 13172017 -171116645 + L2 LINE L2 3227 3268 -4 201 296 165 17 chr4 13172443 13172558 -171116104 + MIR SINE MIR 125 256 -6 1049 136 6 0 chr4 13172862 13173039 -171115623 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 254 37 111 0 chr4 13173039 13173093 -171115569 + CT-rich Low_complexity Low_complexity 2 61 0 4126 85 9 7 chr4 13173226 13173779 -171114883 - MER41A LTR ERV1 0 554 1 191 244 267 0 chr4 13174588 13174674 -171113988 - L2 LINE L2 -2 3311 3203 235 356 62 23 chr4 13175091 13175268 -171113394 + LTR16A LTR ERVL 7 190 -260 413 255 31 67 chr4 13175380 13175463 -171113199 + HERV16 LTR ERVL 3410 3494 -1502 2652 147 14 2 chr4 13175463 13175701 -171112961 - MSTA LTR MaLR 0 428 181 2259 104 0 7 chr4 13175701 13175999 -171112663 - AluSx SINE Alu -5 307 12 2652 147 14 2 chr4 13175999 13176183 -171112479 - MSTA LTR MaLR -247 181 1 413 255 31 67 chr4 13176183 13176354 -171112308 + HERV16 LTR ERVL 3494 3655 -1341 372 312 21 0 chr4 13177699 13177840 -171110822 + HERV16 LTR ERVL 4685 4828 -657 323 284 99 25 chr4 13179473 13179635 -171109027 - LTR16C LTR ERVL -26 465 292 1668 107 0 75 chr4 13180297 13180605 -171108057 - L1P4 LINE L1 -532 5634 5350 918 148 6 0 chr4 13180614 13180776 -171107886 - L1MA2 LINE L1 -1 6303 6141 3068 193 4 35 chr4 13180776 13181010 -171107652 - L1P4 LINE L1 -879 5267 5027 2376 117 0 0 chr4 13181010 13181319 -171107343 - AluSg SINE Alu -1 309 1 3068 193 4 35 chr4 13181319 13181826 -171106836 - L1P4 LINE L1 -1119 5027 4549 2376 87 3 37 chr4 13181844 13182166 -171106496 - AluY SINE Alu 0 311 1 708 256 113 39 chr4 13182179 13182543 -171106119 + LTR16B LTR ERVL 74 464 0 426 221 66 0 chr4 13182543 13182663 -171105999 + LTR16C LTR ERVL 362 489 -2 186 43 0 0 chr4 13182714 13182737 -171105925 + (CA)n Simple_repeat Simple_repeat 2 24 0 1789 153 145 16 chr4 13183770 13184149 -171104513 - MSTA LTR MaLR 0 428 1 564 244 72 81 chr4 13185568 13185789 -171102873 + MER20 DNA MER1_type 1 219 0 203 281 250 6 chr4 13185885 13186049 -171102613 - MIR SINE MIR -19 243 40 337 316 103 22 chr4 13186797 13186933 -171101729 + L2 LINE L2 3121 3267 -5 333 323 85 18 chr4 13187660 13187824 -171100838 + L2 LINE L2 3095 3269 -3 183 129 0 0 chr4 13187832 13187863 -171100799 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 196 225 0 0 chr4 13187964 13188004 -171100658 + L2 LINE L2 3217 3256 -16 21 0 0 0 chr4 13188096 13188117 -171100545 + AT_rich Low_complexity Low_complexity 1 21 0 335 300 59 35 chr4 13188491 13188661 -171100001 - MIR SINE MIR -6 256 83 455 268 80 0 chr4 13188713 13188851 -171099811 - MER63 DNA MER1_type -61 775 1 402 285 51 7 chr4 13189357 13189494 -171099168 - L2 LINE L2 0 3313 3171 * 707 258 56 28 chr4 13189490 13189742 -171098920 + MIR SINE MIR 5 262 0 287 357 72 11 chr4 13189806 13190083 -171098579 - L2 LINE L2 -223 3090 2792 519 60 0 0 chr4 13190122 13190189 -171098473 + (TTCC)n Simple_repeat Simple_repeat 4 70 0 262 274 57 89 chr4 13191253 13191310 -171097352 - MIR SINE MIR -74 188 131 3899 96 3 12 chr4 13191310 13191334 -171097328 - L1PA13 LINE L1 -11 6152 6129 1849 132 36 93 chr4 13191334 13191720 -171096942 - THE1B LTR MaLR 0 364 1 3899 96 3 12 chr4 13191720 13192260 -171096402 - L1PA13 LINE L1 -34 6129 5593 262 274 57 89 chr4 13192260 13192359 -171096303 - MIR SINE MIR -131 131 37 21 0 0 0 chr4 13192579 13192600 -171096062 + AT_rich Low_complexity Low_complexity 1 21 0 208 282 121 24 chr4 13192744 13192868 -171095794 + MIR SINE MIR 114 249 -13 991 178 0 12 chr4 13192936 13193099 -171095563 - FRAM SINE Alu -18 158 1 334 287 132 8 chr4 13195118 13195247 -171093415 - L2 LINE L2 -616 2698 2554 195 243 100 29 chr4 13196110 13196180 -171092482 - MIR SINE MIR -99 109 35 378 0 0 0 chr4 13196354 13196396 -171092266 + (TA)n Simple_repeat Simple_repeat 2 43 0 1419 194 88 12 chr4 13197064 13197220 -171091442 - THE1C LTR MaLR -8 367 224 234 0 0 0 chr4 13197220 13197246 -171091416 + (GA)n Simple_repeat Simple_repeat 1 26 0 1419 194 88 12 chr4 13197246 13197430 -171091232 - THE1C LTR MaLR -151 224 1 9328 135 22 33 chr4 13197430 13199025 -171089637 - THE1C-int LTR MaLR 0 1580 4 1492 191 55 33 chr4 13199028 13199395 -171089267 - THE1C LTR MaLR 0 375 1 4824 220 26 7 chr4 13200104 13201670 -171086992 + L1MC1 LINE L1 4724 6315 -18 317 297 36 9 chr4 13201685 13201796 -171086866 - L1M4 LINE L1 -2115 4031 3918 3643 30 17 0 chr4 13201796 13202258 -171086404 + L1PA2 LINE L1 3841 4310 -1836 7807 24 0 0 chr4 13202358 13204044 -171084618 + L1PA2 LINE L1 4470 6155 0 253 231 82 30 chr4 13204060 13204194 -171084468 - L1M4 LINE L1 -2216 3930 3790 204 135 0 0 chr4 13204805 13204842 -171083820 + (T)n Simple_repeat Simple_repeat 1 37 0 380 354 59 14 chr4 13204936 13205425 -171083237 + L1ME LINE L1 5313 5823 -339 237 254 32 16 chr4 13206751 13206814 -171081848 - MIR SINE MIR -100 162 99 218 292 0 31 chr4 13206901 13206966 -171081696 - MIR SINE MIR -180 82 20 1859 167 21 42 chr4 13207063 13207256 -171081406 - THE1C LTR MaLR 0 375 192 1904 122 42 0 chr4 13207256 13207542 -171081120 + AluSg SINE Alu 1 298 -12 1859 167 21 42 chr4 13207542 13207731 -171080931 - THE1C LTR MaLR -183 192 1 891 259 62 0 chr4 13208229 13208472 -171080190 + MIR SINE MIR 5 262 0 2410 122 8 36 chr4 13208517 13208903 -171079759 + THE1C LTR MaLR 1 375 0 9796 132 29 10 chr4 13208903 13210454 -171078208 + THE1C-int LTR MaLR 1 1580 0 2400 138 11 0 chr4 13210454 13210825 -171077837 + THE1C LTR MaLR 1 375 0 337 235 34 0 chr4 13211443 13211562 -171077100 + CT-rich Low_complexity Low_complexity 3 125 0 28 0 0 0 chr4 13212137 13212165 -171076497 + AT_rich Low_complexity Low_complexity 1 28 0 1035 245 23 89 chr4 13212804 13213286 -171075376 - LTR40a LTR ERVL -65 454 5 692 284 41 9 chr4 13213312 13213530 -171075132 + MIR SINE MIR 35 259 -3 26 64 0 0 chr4 13213534 13213581 -171075081 + AT_rich Low_complexity Low_complexity 1 47 0 651 241 7 0 chr4 13214737 13214874 -171073788 + Tigger3(Golem) DNA MER2_type 4 141 -2888 * 1308 183 28 0 chr4 13214872 13215123 -171073539 + Tigger3(Golem) DNA MER2_type 2771 3028 -1 378 0 0 0 chr4 13215553 13215595 -171073067 + (CA)n Simple_repeat Simple_repeat 2 43 0 439 116 85 21 chr4 13267665 13268150 -171020512 + (CATAT)n Simple_repeat Simple_repeat 1 516 0 416 63 21 95 chr4 13268119 13268309 -171020353 + (TA)n Simple_repeat Simple_repeat 2 177 0 * 347 51 15 113 chr4 13268326 13268521 -171020141 + (TA)n Simple_repeat Simple_repeat 2 177 0 372 167 70 19 chr4 13268527 13268733 -171019929 + (CATAT)n Simple_repeat Simple_repeat 1 216 0 1002 177 94 0 chr4 13269255 13269509 -171019153 - L1MA8 LINE L1 -1 6290 6013 291 331 73 8 chr4 13270174 13270298 -171018364 + MIR3 SINE MIR 45 176 -32 185 196 22 0 chr4 13270707 13270753 -171017909 + GA-rich Low_complexity Low_complexity 2 48 0 390 244 0 0 chr4 13271189 13271279 -171017383 + FLAM_A SINE Alu 44 133 0 304 412 10 20 chr4 13271352 13271556 -171017106 - L2 LINE L2 -260 3053 2852 760 178 8 0 chr4 13272370 13272499 -171016163 + MLT1D LTR MaLR 1 130 -375 455 298 18 9 chr4 13274505 13274619 -171014043 + L2 LINE L2 3182 3296 -17 233 320 48 40 chr4 13274728 13274853 -171013809 + MIR SINE MIR 16 141 -67 383 113 28 28 chr4 13274881 13274952 -171013710 + AluSc SINE Alu 224 294 -5 298 323 0 46 chr4 13274996 13275126 -171013536 + MIR SINE MIR 89 212 -50 253 387 54 0 chr4 13275318 13275429 -171013233 + L2 LINE L2 3152 3268 -4 25 18 0 73 chr4 13275467 13275522 -171013140 + AT_rich Low_complexity Low_complexity 1 51 0 1750 166 27 6 chr4 13276416 13276748 -171011914 - L1MA2 LINE L1 0 6304 5966 283 286 50 8 chr4 13277321 13277440 -171011222 + LTR67 LTR ERVL 428 551 -6 1104 158 11 16 chr4 13277588 13277778 -171010884 - AluJb SINE Alu -12 300 112 223 360 13 0 chr4 13278292 13278367 -171010295 - L2 LINE L2 -13 3259 3184 369 0 0 0 chr4 13278845 13278886 -171009776 + (TG)n Simple_repeat Simple_repeat 2 42 0 476 290 88 42 chr4 13279050 13279267 -171009395 - MIR SINE MIR -14 248 22 199 310 109 52 chr4 13282348 13282522 -171006140 - L3 LINE CR1 -40 1537 1354 21 0 0 0 chr4 13282630 13282651 -171006011 + AT_rich Low_complexity Low_complexity 1 21 0 300 111 0 0 chr4 13282651 13282696 -171005966 + (CA)n Simple_repeat Simple_repeat 2 46 0 2154 98 11 3 chr4 13282702 13282987 -171005675 - AluSq SINE Alu -26 287 1 1088 229 54 37 chr4 13285327 13285601 -171003061 - AluJo SINE Alu -8 304 23 2214 138 28 6 chr4 13285601 13285957 -171002705 - THE1B LTR MaLR 0 364 1 1088 229 54 37 chr4 13285957 13285979 -171002683 - AluJo SINE Alu -289 23 3 339 302 127 38 chr4 13285986 13286198 -171002464 - MIR SINE MIR -11 251 21 457 340 31 5 chr4 13286293 13286484 -171002178 + MIR SINE MIR 6 201 -61 919 128 47 14 chr4 13286610 13286758 -171001904 - FRAM SINE Alu -12 164 12 187 342 155 19 chr4 13287012 13287167 -171001495 + MIR SINE MIR 1 176 -86 181 336 115 0 chr4 13287163 13287267 -171001395 - MIR SINE MIR -105 157 42 * 1674 180 66 6 chr4 13287317 13287683 -171000979 - L1MB4 LINE L1 -6 6174 5787 207 0 0 0 chr4 13288054 13288077 -171000585 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1751 169 36 0 chr4 13288079 13288357 -171000305 - AluJb SINE Alu -23 289 2 228 330 20 20 chr4 13288380 13288480 -171000182 + MIR3 SINE MIR 92 191 -17 222 301 158 60 chr4 13288710 13288893 -170999769 - MIR SINE MIR -50 212 12 194 268 18 18 chr4 13289117 13289173 -170999489 - L2 LINE L2 -93 3220 3165 334 295 101 53 chr4 13290802 13291009 -170997653 - MIR SINE MIR 0 262 46 294 295 42 0 chr4 13291500 13291595 -170997067 - MER67C LTR ERV1 -367 343 245 297 331 58 16 chr4 13291637 13291758 -170996904 + MIR SINE MIR 91 216 -46 198 351 53 30 chr4 13292459 13292590 -170996072 + MER5A DNA MER1_type 55 188 -1 43615 42 3 1 chr4 13292689 13298833 -170989829 + L1PA3 LINE L1 2 6155 0 281 315 25 26 chr4 13299609 13299836 -170988826 - MER67A LTR ERV1 0 543 282 * 1138 275 81 16 chr4 13299817 13300306 -170988356 - MER67B LTR ERV1 -269 392 1 322 308 55 20 chr4 13300531 13300677 -170987985 - MIR SINE MIR -56 206 56 504 255 0 50 chr4 13301696 13301837 -170986825 - MER5A DNA MER1_type -55 134 1 369 279 228 0 chr4 13301866 13302002 -170986660 + MER5A DNA MER1_type 22 188 -1 306 295 35 4 chr4 13303871 13303993 -170984669 + MER5A DNA MER1_type 14 128 -50 5000 150 21 9 chr4 13304169 13305084 -170983578 + L1PA15 LINE L1 5235 6164 -1 230 386 70 0 chr4 13305130 13305288 -170983374 + MIR SINE MIR 30 198 -64 400 370 117 9 chr4 13305409 13305798 -170982864 + L2 LINE L2 2716 3149 -164 263 222 42 0 chr4 13305798 13305870 -170982792 - LTR33A LTR ERVL -2 521 447 406 266 65 65 chr4 13306182 13306321 -170982341 + L2 LINE L2 3175 3313 0 312 313 38 30 chr4 13306525 13306656 -170982006 + MIR3 SINE MIR 23 154 -54 225 276 0 58 chr4 13306718 13306805 -170981857 - L2 LINE L2 0 3272 3191 237 65 0 0 chr4 13307162 13307193 -170981469 + (TG)n Simple_repeat Simple_repeat 2 32 0 594 320 35 27 chr4 13307195 13307451 -170981211 + MIR SINE MIR 5 262 0 492 297 19 7 chr4 13307838 13307993 -170980669 - MIR3 SINE MIR -29 179 23 270 193 0 0 chr4 13308505 13308562 -170980100 + (TG)n Simple_repeat Simple_repeat 2 58 0 1110 185 0 0 chr4 13308902 13309080 -170979582 - AluJb SINE Alu 0 312 135 1840 272 87 10 chr4 13309172 13309767 -170978895 - L1ME1 LINE L1 -27 6139 5499 1121 259 34 37 chr4 13309769 13310090 -170978572 - MLT1A1 LTR MaLR -38 327 8 695 239 157 28 chr4 13310181 13310570 -170978092 - L1ME1 LINE L1 -745 5401 4963 414 115 63 35 chr4 13310633 13310807 -170977855 + (CATAT)n Simple_repeat Simple_repeat 2 180 0 324 132 79 40 chr4 13310978 13311130 -170977532 + (CATAT)n Simple_repeat Simple_repeat 3 160 0 381 59 21 106 chr4 13311135 13311483 -170977179 + (TA)n Simple_repeat Simple_repeat 1 318 0 317 271 156 8 chr4 13311497 13311535 -170977127 - L1ME1 LINE L1 -1941 4205 4174 180 0 0 0 chr4 13311535 13311555 -170977107 + (ATTG)n Simple_repeat Simple_repeat 1 20 0 317 271 156 8 chr4 13311555 13311638 -170977024 - L1ME1 LINE L1 -1972 4174 4066 991 287 77 58 chr4 13311669 13311712 -170976950 - L1ME1 LINE L1 -3139 3007 2966 432 82 0 0 chr4 13311712 13311773 -170976889 + (TA)n Simple_repeat Simple_repeat 1 61 0 991 287 77 58 chr4 13311773 13312427 -170976235 - L1ME1 LINE L1 -3180 2966 2287 1518 213 19 19 chr4 13312427 13312789 -170975873 + MLT1A1 LTR MaLR 1 362 -3 991 287 77 58 chr4 13312789 13312971 -170975691 - L1ME1 LINE L1 -3859 2287 2110 13016 260 25 12 chr4 13312982 13313561 -170975101 - L1PA12 LINE L1 -759 6825 6255 300 27 0 0 chr4 13313561 13313598 -170975064 + (TG)n Simple_repeat Simple_repeat 2 38 0 13016 260 25 12 chr4 13313598 13316989 -170971673 - L1PA12 LINE L1 -1329 6255 2800 615 307 0 0 chr4 13316984 13317121 -170971541 - L1PA12 LINE L1 -5967 1617 1481 * 2845 16 0 0 chr4 13317136 13317452 -170971210 + AluYb8 SINE Alu 1 316 -2 1027 194 5 5 chr4 13317480 13317697 -170970965 - MLT1-int LTR MaLR -1172 199 1 * 5688 204 31 2 chr4 13317697 13318721 -170969941 - L1PA15-16 LINE L1 -5776 1073 20 1592 220 0 72 chr4 13318931 13319331 -170969331 + MLT1B LTR MaLR 15 385 -5 1290 202 16 18 chr4 13319336 13319924 -170968738 + MLT1B-int LTR MaLR 1 883 -488 405 214 67 17 chr4 13320044 13320166 -170968496 + MLT1A2 LTR MaLR 245 465 -2 918 270 77 34 chr4 13320171 13320615 -170968047 + MLT1C LTR MaLR 5 467 0 24 0 0 0 chr4 13321141 13321165 -170967497 + AT_rich Low_complexity Low_complexity 1 24 0 276 357 100 7 chr4 13321368 13321525 -170967137 + L2 LINE L2 2652 2793 -521 198 0 0 0 chr4 13321525 13321547 -170967115 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 276 357 100 7 chr4 13321547 13321680 -170966982 + L2 LINE L2 2793 2969 -345 4836 73 19 0 chr4 13321871 13322491 -170966171 + PABL_A LTR ERV1 26 657 -3 323 254 45 36 chr4 13322644 13322754 -170965908 + MLT1H1 LTR MaLR 441 551 -4 342 257 40 10 chr4 13322763 13322864 -170965798 - LTR67 LTR ERVL -43 514 411 452 305 13 13 chr4 13323605 13323756 -170964906 + MIR SINE MIR 2 152 -110 329 281 7 0 chr4 13323805 13323940 -170964722 + (CATATA)n Simple_repeat Simple_repeat 3 138 0 1460 205 59 137 chr4 13324221 13324733 -170963929 + MER70A LTR ERVL 1 472 0 225 339 37 46 chr4 13324848 13325032 -170963630 - MIR3 SINE MIR -63 145 3 522 296 39 0 chr4 13325244 13325423 -170963239 - MER5A DNA MER1_type 0 189 4 373 304 20 98 chr4 13325498 13325794 -170962868 - LTR16A LTR ERVL -12 438 166 277 294 65 0 chr4 13326060 13326152 -170962510 + MIR SINE MIR 39 136 -126 1385 251 137 7 chr4 13326512 13326922 -170961740 - MLT1F LTR MaLR -74 468 6 237 281 8 70 chr4 13327910 13328038 -170960624 + MIR SINE MIR 16 135 -73 1627 156 181 8 chr4 13328268 13328633 -170960029 + MSTA LTR MaLR 1 428 0 271 163 33 22 chr4 13328687 13328779 -170959883 + (TA)n Simple_repeat Simple_repeat 2 94 0 309 172 0 0 chr4 13329631 13329695 -170958967 + CT-rich Low_complexity Low_complexity 3 66 0 2101 136 0 0 chr4 13329697 13330006 -170958656 - AluY SINE Alu -2 309 1 882 92 8 0 chr4 13330006 13330125 -170958537 - AluSq/x SINE Alu -176 136 17 264 351 152 0 chr4 13330549 13330720 -170957942 + MIR SINE MIR 53 249 -13 2083 208 36 5 chr4 13330726 13331139 -170957523 + MSTB LTR MaLR 1 426 0 194 359 162 6 chr4 13331238 13331405 -170957257 + MIR SINE MIR 14 206 -56 1065 228 4 4 chr4 13331672 13331900 -170956762 + L1MA9 LINE L1 49 276 -6754 9140 257 44 27 chr4 13331919 13336832 -170951830 + L1MA9 LINE L1 1217 5916 -1190 1110 90 0 0 chr4 13336832 13336976 -170951686 + AluY SINE Alu 155 298 -13 4431 190 28 84 chr4 13336978 13338400 -170950262 + L1MA9 LINE L1 5911 7272 0 331 307 63 24 chr4 13338562 13338689 -170949973 - L2 LINE L2 -25 3247 3116 269 263 26 0 chr4 13338708 13338784 -170949878 - MER116 DNA Mariner 0 80 3 189 319 11 53 chr4 13339605 13339699 -170948963 - MIR SINE MIR -1 261 172 204 40 0 0 chr4 13339837 13339862 -170948800 + (TGAA)n Simple_repeat Simple_repeat 2 26 0 1647 179 14 3 chr4 13340030 13340327 -170948335 - MLT1A1 LTR MaLR -49 316 17 268 216 0 0 chr4 13340515 13340566 -170948096 - MIR SINE MIR -135 127 77 191 321 115 32 chr4 13340821 13341039 -170947623 - L2 LINE L2 -927 2387 2152 2511 159 65 24 chr4 13341705 13342245 -170946417 + L1MA7 LINE L1 5730 6291 0 552 236 21 7 chr4 13342586 13342726 -170945936 - MER103 DNA DNA -24 142 1 21 0 0 0 chr4 13343755 13343776 -170944886 + AT_rich Low_complexity Low_complexity 1 21 0 1254 221 18 11 chr4 13344180 13344456 -170944206 + AluJo SINE Alu 16 293 -19 23 54 0 0 chr4 13344877 13344914 -170943748 + AT_rich Low_complexity Low_complexity 1 37 0 1918 96 54 0 chr4 13345336 13345596 -170943066 + AluSp SINE Alu 3 276 -37 270 0 0 0 chr4 13345600 13345630 -170943032 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 22 70 0 0 chr4 13347844 13347887 -170940775 + AT_rich Low_complexity Low_complexity 1 43 0 25 51 0 0 chr4 13348643 13348682 -170939980 + AT_rich Low_complexity Low_complexity 1 39 0 186 213 148 33 chr4 13348745 13348806 -170939856 + MIR SINE MIR 87 154 -108 813 246 69 3 chr4 13348921 13349222 -170939440 - MER33 DNA MER1_type -6 318 1 383 342 31 26 chr4 13349334 13349527 -170939135 - MIR3 SINE MIR -1 207 14 2452 146 21 17 chr4 13349651 13350070 -170938592 - MSTA LTR MaLR -7 421 1 250 267 25 0 chr4 13350712 13350825 -170937837 + MIR SINE MIR 40 153 -64 387 0 0 0 chr4 13351296 13351339 -170937323 + (TA)n Simple_repeat Simple_repeat 2 44 0 9078 164 18 7 chr4 13351469 13352164 -170936498 - L1MA1 LINE L1 -4 6298 5612 477 0 0 0 chr4 13352164 13352217 -170936445 + (TG)n Simple_repeat Simple_repeat 2 54 0 9078 164 18 7 chr4 13352217 13354277 -170934385 - L1MA1 LINE L1 -690 5612 3511 192 216 0 0 chr4 13354385 13354436 -170934226 + (CATATA)n Simple_repeat Simple_repeat 4 54 0 662 163 16 24 chr4 13354455 13354578 -170934084 + FRAM SINE Alu 12 133 -43 253 192 0 0 chr4 13354589 13354641 -170934021 + Alu SINE Alu 239 290 -12 269 316 18 9 chr4 13355352 13355466 -170933196 - MLT1G-int LTR MaLR -1619 116 2 1301 288 79 21 chr4 13355482 13356057 -170932605 - MLT1G LTR MaLR -18 572 3 213 376 14 21 chr4 13356701 13356842 -170931820 - MIR3 SINE MIR -67 141 2 190 277 69 30 chr4 13357532 13357633 -170931029 + MIR SINE MIR 79 183 -79 1797 143 69 69 chr4 13357645 13358024 -170930638 + MLT1B LTR MaLR 12 390 0 237 276 11 24 chr4 13358920 13359019 -170929643 - MIR SINE MIR -96 112 15 210 143 61 0 chr4 13359058 13359107 -170929555 + (CAAA)n Simple_repeat Simple_repeat 4 55 0 1184 66 7 0 chr4 13359555 13359706 -170928956 + AluY SINE Alu 152 303 -8 1319 315 95 35 chr4 13360273 13360865 -170927797 - L2 LINE L2 -8 3305 2639 2233 123 0 0 chr4 13360865 13361173 -170927489 + AluSg SINE Alu 1 308 -2 1319 315 95 35 chr4 13361173 13361467 -170927195 - L2 LINE L2 -674 2639 2364 267 323 69 39 chr4 13361589 13361719 -170926943 - L2 LINE L2 -219 3053 2920 2257 230 9 25 chr4 13362102 13362559 -170926103 + MLT2B1 LTR ERVL 1 463 -57 285 29 0 0 chr4 13362559 13362593 -170926069 + (TCCC)n Simple_repeat Simple_repeat 2 35 0 2257 230 9 25 chr4 13362593 13362622 -170926040 + MLT2B1 LTR ERVL 463 481 -39 699 108 0 0 chr4 13362622 13362733 -170925929 + (TCTA)n Simple_repeat Simple_repeat 2 112 0 2257 230 9 25 chr4 13362733 13362771 -170925891 + MLT2B1 LTR ERVL 481 518 -2 268 314 86 9 chr4 13363300 13363408 -170925254 - MIR SINE MIR -63 145 53 302 289 36 0 chr4 13363528 13363611 -170925051 + L2 LINE L2 3227 3312 -1 204 158 0 0 chr4 13363763 13363801 -170924861 + (TG)n Simple_repeat Simple_repeat 1 38 0 698 243 107 6 chr4 13364021 13364190 -170924472 + MER58A DNA MER1_type 2 187 -37 287 360 0 20 chr4 13364214 13364314 -170924348 - MIR3 SINE MIR -48 160 63 2283 98 0 0 chr4 13365268 13365564 -170923098 - AluSg SINE Alu -14 296 1 249 196 36 0 chr4 13365774 13365830 -170922832 - LTR67 LTR ERVL -5 552 495 232 368 42 14 chr4 13366414 13366558 -170922104 + MLT1K LTR MaLR 354 501 -87 273 29 0 0 chr4 13367110 13367144 -170921518 + (CA)n Simple_repeat Simple_repeat 1 34 0 210 71 0 0 chr4 13367151 13367179 -170921483 + (GAAAA)n Simple_repeat Simple_repeat 5 32 0 338 288 77 35 chr4 13367451 13367621 -170921041 - MIR SINE MIR -33 229 53 1301 228 39 43 chr4 13368078 13368544 -170920118 - MLT2C2 LTR ERVL 0 464 1 541 256 23 118 chr4 13371647 13371952 -170916710 + L2 LINE L2 3038 3313 0 21 0 0 0 chr4 13373428 13373449 -170915213 + AT_rich Low_complexity Low_complexity 1 21 0 308 246 171 40 chr4 13373974 13374149 -170914513 + MIR SINE MIR 53 250 -12 2094 110 20 6 chr4 13374950 13375386 -170913276 - L1PA12 LINE L1 -589 5574 5135 * 2581 110 19 0 chr4 13375384 13375758 -170912904 + L1PA12 LINE L1 5578 5958 -210 304 229 48 19 chr4 13375900 13376005 -170912657 + L1PA12 LINE L1 5911 6018 -150 477 191 48 0 chr4 13376013 13376118 -170912544 + L1PA12 LINE L1 6052 6161 -7 21 0 0 0 chr4 13376118 13376139 -170912523 + AT_rich Low_complexity Low_complexity 1 21 0 403 308 58 38 chr4 13376686 13376937 -170911725 + MIR SINE MIR 8 261 -1 246 335 56 1 chr4 13377042 13377150 -170911512 + MIR SINE MIR 49 160 -62 333 321 43 74 chr4 13377196 13377495 -170911167 + L2 LINE L2 2207 2496 -818 279 279 0 0 chr4 13377728 13377796 -170910866 + L2 LINE L2 3163 3230 -42 2278 82 0 0 chr4 13379487 13379812 -170908850 + AluY SINE Alu 1 325 0 420 317 44 29 chr4 13379865 13380070 -170908592 - L2 LINE L2 -10 3303 3096 263 317 94 27 chr4 13380049 13380273 -170908389 - L2 LINE L2 -3064 250 12 * 7316 36 15 7 chr4 13380531 13381894 -170906768 - L1PA4 LINE L1 -3 6152 4785 2010 132 14 0 chr4 13381910 13382206 -170906456 + AluSx SINE Alu 1 300 -12 180 0 0 0 chr4 13382206 13382226 -170906436 + (GGGGA)n Simple_repeat Simple_repeat 1 20 0 35 24 0 0 chr4 13382547 13382589 -170906073 + AT_rich Low_complexity Low_complexity 1 42 0 455 324 66 41 chr4 13383568 13383960 -170904702 + L1MC/D LINE L1 2676 3077 -3069 35 78 0 0 chr4 13384104 13384181 -170904481 + AT_rich Low_complexity Low_complexity 1 77 0 378 261 79 94 chr4 13385211 13385414 -170903248 - MIR SINE MIR -58 204 5 342 295 6 64 chr4 13385421 13385594 -170903068 + L1MC/D LINE L1 5305 5467 -2341 325 93 0 0 chr4 13385632 13385686 -170902976 + Alu SINE Alu 247 300 0 2017 125 24 0 chr4 13385707 13385996 -170902666 + AluSg SINE Alu 1 296 -14 254 308 113 8 chr4 13386075 13386208 -170902454 + MLT1I LTR MaLR 3 149 -260 24 32 0 0 chr4 13386221 13386252 -170902410 + AT_rich Low_complexity Low_complexity 1 31 0 1944 106 0 35 chr4 13386341 13386623 -170902039 + AluSg SINE Alu 1 272 -38 184 255 21 0 chr4 13386869 13386916 -170901746 + L2 LINE L2 3213 3260 -12 23 54 0 0 chr4 13388321 13388358 -170900304 + AT_rich Low_complexity Low_complexity 1 37 0 195 162 0 0 chr4 13388599 13388636 -170900026 + (ATG)n Simple_repeat Simple_repeat 1 37 0 271 261 0 14 chr4 13388811 13388880 -170899782 + GA-rich Low_complexity Low_complexity 3 70 0 946 275 104 51 chr4 13390419 13391004 -170897658 - L1ME3A LINE L1 0 6170 5555 802 149 52 112 chr4 13391072 13391340 -170897322 + L1MA7 LINE L1 6040 6291 0 934 210 7 7 chr4 13391361 13398210 -170890452 - ALR/Alpha Satellite centromeric -2 9847 3001 2066 82 21 85 chr4 13398210 13398539 -170890123 - AluY SINE Alu -3 308 1 934 210 7 7 chr4 13398539 13399417 -170889245 - ALR/Alpha Satellite centromeric -6848 3001 2125 2099 121 0 34 chr4 13399417 13399739 -170888923 - AluY SINE Alu 0 311 1 934 210 7 7 chr4 13399739 13401206 -170887456 - ALR/Alpha Satellite centromeric -7724 2125 1 905 211 13 8 chr4 13401222 13404754 -170883908 - ALR/Alpha Satellite centromeric 0 3549 1 992 193 7 0 chr4 13404775 13406604 -170882058 - ALR/Alpha Satellite centromeric 0 1841 1 913 194 24 6 chr4 13406617 13407322 -170881340 - ALR/Alpha Satellite centromeric 0 717 1 637 279 124 18 chr4 13407331 13407783 -170880879 - L1M4 LINE L1 -2193 3953 3454 26 0 0 0 chr4 13407816 13407842 -170880820 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr4 13407864 13407889 -170880773 + AT_rich Low_complexity Low_complexity 1 25 0 2663 112 19 2 chr4 13407889 13408307 -170880355 - L1PA13 LINE L1 -5 6158 5734 736 173 8 16 chr4 13408307 13408434 -170880228 - FRAM SINE Alu -22 154 29 2384 203 60 41 chr4 13408454 13409162 -170879500 + LTR1B LTR ERV1 43 762 -23 591 208 0 0 chr4 13409199 13409305 -170879357 - FLAM_C SINE Alu -37 106 1 903 259 60 78 chr4 13409436 13410207 -170878455 - L1M4 LINE L1 -3180 2966 2210 471 232 0 27 chr4 13410272 13410384 -170878278 - MER103 DNA DNA -34 132 24 245 235 39 0 chr4 13410798 13410849 -170877813 - MLT1J2 LTR MaLR -123 327 275 2469 48 0 32 chr4 13411150 13411463 -170877199 + AluY SINE Alu 1 303 -8 205 358 133 0 chr4 13411629 13411780 -170876882 - MIR SINE MIR -14 248 78 263 267 30 61 chr4 13412546 13412677 -170875985 - MIR SINE MIR -42 220 94 1119 250 75 50 chr4 13412998 13413422 -170875240 + MLT1D LTR MaLR 3 437 -68 356 181 28 0 chr4 13414528 13414600 -170874062 - AluJ/FRAM SINE Alu -2 300 227 1959 170 40 36 chr4 13415182 13415727 -170872935 - MLT2A2 LTR ERVL 0 554 5 238 284 0 15 chr4 13415849 13415916 -170872746 + MLT1G1 LTR MaLR 1 66 -524 351 254 210 17 chr4 13416038 13416219 -170872443 + MLT1G1 LTR MaLR 33 248 -282 * 376 340 35 35 chr4 13416215 13416359 -170872303 + MLT1G1 LTR MaLR 374 517 -78 4665 120 52 11 chr4 13416364 13417107 -170871555 - MER4E LTR ERV1 -5 774 1 247 247 0 13 chr4 13417113 13417190 -170871472 + MLT1G1 LTR MaLR 520 595 0 342 284 69 17 chr4 13417892 13418008 -170870654 - MER5A DNA MER1_type -30 159 38 255 288 96 40 chr4 13417906 13418031 -170870631 + MER5A DNA MER1_type 55 186 -3 * 246 275 92 50 chr4 13418160 13418280 -170870382 + LTR16A LTR ERVL 1 125 -325 394 238 121 44 chr4 13418886 13419092 -170869570 + L1MC4 LINE L1 6465 6686 -1356 303 104 0 0 chr4 13419145 13419193 -170869469 + (CA)n Simple_repeat Simple_repeat 2 49 0 1117 290 144 27 chr4 13419218 13419731 -170868931 + MLT1G1 LTR MaLR 23 595 0 247 151 38 38 chr4 13419735 13419788 -170868874 - L2 LINE L2 -950 2364 2312 28 61 0 0 chr4 13419835 13419884 -170868778 + AT_rich Low_complexity Low_complexity 1 49 0 252 315 22 11 chr4 13419938 13420027 -170868635 - L2 LINE L2 -639 2675 2586 279 356 111 0 chr4 13420339 13420474 -170868188 + MIR SINE MIR 103 252 -10 192 40 0 0 chr4 13421492 13421517 -170867145 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 291 294 49 0 chr4 13421671 13421773 -170866889 + MIR SINE MIR 32 138 -124 338 61 20 0 chr4 13422003 13422052 -170866610 + (CA)n Simple_repeat Simple_repeat 2 51 0 338 321 80 28 chr4 13422637 13422849 -170865813 + MIR SINE MIR 10 232 -30 366 333 76 18 chr4 13422986 13423211 -170865451 + L2 LINE L2 2828 3065 -248 321 278 113 46 chr4 13423478 13423672 -170864990 + MIR SINE MIR 26 232 -30 8046 248 54 18 chr4 13423865 13424619 -170864043 - L1MB7 LINE L1 -19 6663 5938 4996 150 29 4 chr4 13424619 13426168 -170862494 - L1PA13 LINE L1 0 6163 4591 8046 248 54 18 chr4 13426168 13426572 -170862090 - L1MB7 LINE L1 -744 5938 5550 522 70 0 0 chr4 13426572 13426643 -170862019 + (TAGA)n Simple_repeat Simple_repeat 2 72 0 8046 248 54 18 chr4 13426643 13429158 -170859504 - L1MB7 LINE L1 -1132 5550 2847 457 182 0 0 chr4 13429158 13429235 -170859427 + U6 snRNA snRNA 31 107 0 626 281 83 45 chr4 13429238 13430191 -170858471 - L1MB7 LINE L1 -3785 2887 1730 * 3648 152 3 8 chr4 13430189 13430781 -170857881 + L1PA15 LINE L1 5556 6144 -21 1337 252 23 31 chr4 13430795 13431184 -170857478 - L1MB7 LINE L1 -6149 393 8 3839 119 0 0 chr4 13431630 13432183 -170856479 + MER41A LTR ERV1 2 554 0 1210 219 25 4 chr4 13432686 13432960 -170855702 - AluJo SINE Alu -22 290 11 1137 299 139 14 chr4 13433515 13434283 -170854379 + Charlie8 DNA MER1_type 2 865 -1552 1739 291 59 48 chr4 13434465 13435538 -170853124 + Charlie8 DNA MER1_type 1171 2254 -163 1360 214 33 55 chr4 13435911 13436275 -170852387 - MLT1A1 LTR MaLR 0 365 10 26 30 0 0 chr4 13437349 13437382 -170851280 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr4 13438081 13438102 -170850560 + AT_rich Low_complexity Low_complexity 1 21 0 720 286 48 4 chr4 13438299 13438530 -170850132 + MIR SINE MIR 20 260 -2 268 188 31 42 chr4 13438614 13438710 -170849952 + T-rich Low_complexity Low_complexity 1 95 0 26 30 0 0 chr4 13438989 13439022 -170849640 + AT_rich Low_complexity Low_complexity 1 33 0 451 334 113 36 chr4 13440390 13440560 -170848102 + L3 LINE CR1 1109 1264 -313 237 33 0 0 chr4 13440560 13440590 -170848072 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 451 334 113 36 chr4 13440590 13440754 -170847908 + L3 LINE CR1 1264 1469 -108 530 351 88 39 chr4 13441909 13442316 -170846346 - LTR16A LTR ERVL -6 444 18 925 213 150 57 chr4 13442860 13443194 -170845468 + MLT1A1 LTR MaLR 1 365 0 552 293 140 13 chr4 13443335 13443564 -170845098 + MIR SINE MIR 3 260 -2 183 430 0 0 chr4 13443606 13443692 -170844970 - MIR SINE MIR -170 92 7 251 264 66 44 chr4 13443878 13443969 -170844693 + MIR SINE MIR 119 211 -51 359 180 16 0 chr4 13446364 13446425 -170842237 - L3 LINE CR1 -124 1453 1392 184 227 0 45 chr4 13446517 13446561 -170842101 - L3 LINE CR1 -344 1233 1192 363 297 11 2 chr4 13446938 13447052 -170841610 - MIR SINE MIR -66 142 34 208 270 16 0 chr4 13447074 13447137 -170841525 + (CATATA)n Simple_repeat Simple_repeat 4 67 0 188 306 47 24 chr4 13447240 13447325 -170841337 + MIR SINE MIR 53 139 -123 1564 227 28 18 chr4 13447591 13447983 -170840679 + MSTD LTR MaLR 1 396 0 22 0 0 0 chr4 13448324 13448346 -170840316 + AT_rich Low_complexity Low_complexity 1 22 0 1241 231 98 50 chr4 13449023 13449443 -170839219 + MLT1D LTR MaLR 1 440 -65 2142 176 37 28 chr4 13449455 13450000 -170838662 - MLT2A2 LTR ERVL 0 554 1 313 212 0 0 chr4 13450000 13450065 -170838597 + MLT1D LTR MaLR 441 505 0 2125 83 45 3 chr4 13450453 13450742 -170837920 + AluY SINE Alu 1 301 -10 3396 44 0 0 chr4 13450752 13451163 -170837499 + L1PA5 LINE L1 5419 5829 -325 41317 46 23 6 chr4 13451163 13457211 -170831451 + L1PA3 LINE L1 1 6155 0 2699 51 0 0 chr4 13457221 13457557 -170831105 + L1PA5 LINE L1 5814 6149 -5 531 186 31 39 chr4 13457759 13457888 -170830774 + THE1C LTR MaLR 198 325 -50 3432 189 30 7 chr4 13457897 13459081 -170829581 - L1 LINE L1 -3384 4181 2967 1814 180 46 25 chr4 13459081 13459448 -170829214 + THE1C LTR MaLR 1 375 0 884 169 12 0 chr4 13459449 13459609 -170829053 + THE1C-int LTR MaLR 2 163 -1417 27143 104 9 3 chr4 13459613 13464537 -170824125 - L1PA7 LINE L1 -8 6146 1192 856 133 7 40 chr4 13464540 13464691 -170823971 + THE1C LTR MaLR 230 375 0 10551 156 33 5 chr4 13464691 13466495 -170822167 - L1 LINE L1 -4594 2971 1117 4468 215 36 18 chr4 13466505 13467482 -170821180 - L1 LINE L1 -6562 1003 10 334 268 98 8 chr4 13467835 13467958 -170820704 - MIR SINE MIR -64 198 65 250 310 131 41 chr4 13468710 13468855 -170819807 + L2 LINE L2 3156 3313 0 180 314 86 0 chr4 13469002 13469072 -170819590 + L3 LINE CR1 1007 1082 -495 246 336 57 29 chr4 13469205 13469234 -170819428 - L2 LINE L2 -2 3311 3284 2405 148 25 23 chr4 13469234 13469665 -170818997 - MSTB1 LTR MaLR 0 432 1 246 336 57 29 chr4 13469665 13469775 -170818887 - L2 LINE L2 -29 3284 3168 2143 172 42 32 chr4 13469809 13470350 -170818312 + MLT2A2 LTR ERVL 4 554 0 503 285 55 84 chr4 13470365 13470608 -170818054 - L1MC4a LINE L1 -1725 6083 5859 2026 183 6 81 chr4 13470608 13471077 -170817585 - Tigger2a DNA MER2_type 0 434 1 503 285 55 84 chr4 13471077 13471307 -170817355 - L1MC4a LINE L1 -1949 5859 5624 2059 136 14 0 chr4 13471325 13471620 -170817042 - AluSx SINE Alu -13 299 1 33 25 0 0 chr4 13472422 13472462 -170816200 + AT_rich Low_complexity Low_complexity 1 40 0 1556 191 6 41 chr4 13473074 13473388 -170815274 + AluJb SINE Alu 1 303 -9 180 111 0 0 chr4 13473706 13473733 -170814929 + (TG)n Simple_repeat Simple_repeat 2 28 0 24 53 0 0 chr4 13474172 13474210 -170814452 + AT_rich Low_complexity Low_complexity 1 38 0 252 184 0 0 chr4 13474766 13474815 -170813847 + (CATA)n Simple_repeat Simple_repeat 2 50 0 188 330 17 68 chr4 13475593 13475711 -170812951 + MIR SINE MIR 63 174 -88 535 318 8 34 chr4 13475719 13475955 -170812707 - L2 LINE L2 -2 3311 3082 428 317 33 0 chr4 13476056 13476176 -170812486 - MIR SINE MIR -31 231 108 23 0 0 0 chr4 13477288 13477311 -170811351 + AT_rich Low_complexity Low_complexity 1 23 0 341 320 43 43 chr4 13477534 13477765 -170810897 - MIR SINE MIR 0 262 32 567 332 101 49 chr4 13479246 13479917 -170808745 + L2 LINE L2 1773 2478 -836 300 227 76 0 chr4 13480284 13480350 -170808312 + L2 LINE L2 3201 3271 -1 1953 147 7 10 chr4 13480464 13480764 -170807898 + AluSc SINE Alu 1 299 -10 188 360 132 37 chr4 13481071 13481207 -170807455 + L2 LINE L2 3122 3270 -2 3243 139 33 6 chr4 13481220 13481759 -170806903 + MER41C LTR ERV1 1 554 0 1592 165 66 33 chr4 13481959 13482322 -170806340 - THE1C LTR MaLR 0 375 1 342 316 124 19 chr4 13482451 13482774 -170805888 - MLT1J2 LTR MaLR -58 392 36 818 328 50 39 chr4 13482870 13483461 -170805201 - L2 LINE L2 -5 3308 2704 294 95 0 0 chr4 13483672 13483714 -170804948 + (A)n Simple_repeat Simple_repeat 1 42 0 414 357 58 6 chr4 13484413 13484584 -170804078 - MIR SINE MIR -62 200 21 188 343 58 44 chr4 13484620 13484757 -170803905 + MIR SINE MIR 60 198 -64 222 280 160 10 chr4 13484783 13484883 -170803779 - MIR SINE MIR -29 233 119 714 253 134 36 chr4 13484955 13485343 -170803319 - Zaphod DNA AcHobo 0 4031 3606 1299 199 86 65 chr4 13485361 13485919 -170802743 - Zaphod DNA AcHobo -3051 980 411 1541 223 112 48 chr4 13485933 13486372 -170802290 + MLT2B1 LTR ERVL 1 467 -53 285 51 0 0 chr4 13486383 13486422 -170802240 + (TA)n Simple_repeat Simple_repeat 1 39 0 282 128 0 0 chr4 13486777 13486824 -170801838 + MLT2B1 LTR ERVL 466 512 -8 320 311 60 46 chr4 13486986 13487137 -170801525 - Zaphod DNA AcHobo -3804 227 75 272 231 134 82 chr4 13487202 13487336 -170801326 - MER58B DNA MER1_type -15 326 186 1517 156 75 17 chr4 13488137 13488432 -170800230 + AluSx SINE Alu 1 312 0 453 173 9 18 chr4 13488437 13488547 -170800115 + GA-rich Low_complexity Low_complexity 3 111 0 1380 204 0 38 chr4 13488549 13488838 -170799824 + AluJo SINE Alu 17 294 -18 257 333 0 0 chr4 13489425 13489503 -170799159 + (TG)n Simple_repeat Simple_repeat 2 79 0 223 327 154 0 chr4 13489917 13490021 -170798641 - L2 LINE L2 0 3313 3194 292 349 170 0 chr4 13490087 13490299 -170798363 - MIR SINE MIR -13 249 2 1289 232 19 40 chr4 13491425 13491815 -170796847 - MER66A LTR ERV1 -40 438 88 231 36 0 0 chr4 13492223 13492251 -170796411 + (A)n Simple_repeat Simple_repeat 1 28 0 1496 149 8 0 chr4 13492426 13492674 -170795988 - L1MA4 LINE L1 -278 6022 5773 1260 280 81 37 chr4 13493077 13493918 -170794744 + L1ME3A LINE L1 5122 5996 -174 617 297 93 45 chr4 13494650 13494806 -170793856 + LTR16A LTR ERVL 23 170 -280 2035 192 68 48 chr4 13494806 13495307 -170793355 - MER67D LTR ERV1 -1 513 3 617 297 93 45 chr4 13495307 13495547 -170793115 + LTR16A LTR ERVL 170 438 -12 24 0 0 0 chr4 13496165 13496189 -170792473 + AT_rich Low_complexity Low_complexity 1 24 0 1145 268 31 25 chr4 13496422 13496776 -170791886 + MLT1A1 LTR MaLR 10 365 0 23 54 0 0 chr4 13497095 13497132 -170791530 + AT_rich Low_complexity Low_complexity 1 37 0 380 291 58 7 chr4 13497135 13497413 -170791249 + L1ME2 LINE L1 2924 3215 -2931 27 0 0 0 chr4 13497485 13497512 -170791150 + AT_rich Low_complexity Low_complexity 1 27 0 593 309 125 45 chr4 13497931 13498827 -170789835 + L1ME2 LINE L1 4976 5947 -217 22 0 0 0 chr4 13498832 13498854 -170789808 + AT_rich Low_complexity Low_complexity 1 22 0 284 236 28 0 chr4 13498860 13498932 -170789730 - LTR16A LTR ERVL -8 442 369 2153 179 33 31 chr4 13498934 13499358 -170789304 - MSTB LTR MaLR -1 425 1 7700 218 39 13 chr4 13499358 13500290 -170788372 - MSTB-int LTR MaLR 0 1651 658 1470 39 0 11 chr4 13500290 13500472 -170788190 + L1PA4 LINE L1 5969 6148 -7 7700 218 39 13 chr4 13500472 13501148 -170787514 - MSTB-int LTR MaLR -993 658 1 2311 176 19 30 chr4 13501148 13501579 -170787083 - MSTB LTR MaLR 0 426 1 2644 93 6 6 chr4 13501679 13502043 -170786619 + THE1B LTR MaLR 1 364 0 29 60 0 0 chr4 13502422 13502472 -170786190 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr4 13502658 13502679 -170785983 + AT_rich Low_complexity Low_complexity 1 21 0 1585 264 21 17 chr4 13502933 13503353 -170785309 + MLT1A2-int LTR MaLR 1314 1735 0 764 204 39 185 chr4 13503353 13503790 -170784872 + MLT1A2 LTR MaLR 1 373 -1 968 344 33 7 chr4 13503792 13504222 -170784440 - LTR16C LTR ERVL -19 472 32 278 336 87 47 chr4 13504688 13504965 -170783697 + L3 LINE CR1 1262 1549 -28 962 191 158 51 chr4 13506283 13506556 -170782106 + AluJb SINE Alu 1 302 0 1887 141 25 0 chr4 13506704 13507006 -170781656 - AluSg SINE Alu 0 309 1 302 359 29 34 chr4 13507400 13507606 -170781056 + MIR SINE MIR 19 223 -39 183 329 174 34 chr4 13507846 13508053 -170780609 - L2 LINE L2 -177 3095 2860 2077 250 83 7 chr4 13509188 13509793 -170778869 - MLT1E1 LTR MaLR -2 652 2 207 286 95 0 chr4 13509834 13509918 -170778744 - MIR SINE MIR -164 98 7 1330 276 30 58 chr4 13510689 13511295 -170777367 - MLT1E LTR MaLR 0 593 5 188 389 11 11 chr4 13511300 13511390 -170777272 + MIR SINE MIR 3 92 -170 2594 171 19 42 chr4 13511433 13512025 -170776637 - L1MA7 LINE L1 0 6291 5714 212 348 45 0 chr4 13512116 13512205 -170776457 + MIR SINE MIR 65 157 -105 1022 183 31 0 chr4 13513058 13513249 -170775413 - MSTB LTR MaLR 0 426 230 1307 114 0 0 chr4 13513251 13513426 -170775236 - AluSx SINE Alu -137 175 1 1192 191 0 0 chr4 13513427 13513626 -170775036 - MSTB LTR MaLR -227 199 1 1577 188 68 9 chr4 13513892 13514232 -170774430 - MLT1A1 LTR MaLR -2 363 4 1572 213 19 35 chr4 13515157 13515523 -170773139 + MLT1A1 LTR MaLR 1 360 -5 347 262 130 92 chr4 13516130 13516375 -170772287 + L1MEc LINE L1 1258 1492 -4904 2029 128 57 35 chr4 13516375 13516742 -170771920 - THE1C LTR MaLR 0 375 1 347 262 130 92 chr4 13516742 13517082 -170771580 + L1MEc LINE L1 1492 1818 -4578 186 0 88 0 chr4 13517082 13517116 -170771546 + (TA)n Simple_repeat Simple_repeat 1 37 0 347 262 130 92 chr4 13517116 13517524 -170771138 + L1MEc LINE L1 1818 2289 -4107 2243 56 11 31 chr4 13518110 13518420 -170770242 - AluY SINE Alu 0 304 1 338 215 77 62 chr4 13518516 13518646 -170770016 + L1MEc LINE L1 3140 3271 -2944 367 314 48 67 chr4 13518796 13519127 -170769535 - L1MC4a LINE L1 -1880 5928 5604 236 268 81 16 chr4 13519267 13519390 -170769272 - L1P LINE L1 -736 5420 5290 21 57 0 0 chr4 13521576 13521611 -170767051 + AT_rich Low_complexity Low_complexity 1 35 0 26755 31 1 0 chr4 13521694 13525725 -170762937 + L1PA2 LINE L1 2124 6155 0 1772 142 151 11 chr4 13525747 13526099 -170762563 - MSTA LTR MaLR -27 401 1 279 200 0 0 chr4 13526129 13526184 -170762478 + Charlie8 DNA MER1_type 2362 2416 -1 355 247 43 91 chr4 13527603 13527789 -170760873 + LTR16A LTR ERVL 268 444 -6 21 89 0 0 chr4 13527863 13527919 -170760743 + AT_rich Low_complexity Low_complexity 1 56 0 218 316 122 31 chr4 13528312 13528410 -170760252 + MIR SINE MIR 21 127 -81 21 57 0 0 chr4 13528653 13528688 -170759974 + AT_rich Low_complexity Low_complexity 1 35 0 504 250 96 0 chr4 13529590 13529726 -170758936 + MER106B DNA MER1_type 1 149 -910 2135 137 0 0 chr4 13531448 13531761 -170756901 + AluSq SINE Alu 1 313 0 320 215 54 43 chr4 13532751 13532844 -170755818 + MIR3 SINE MIR 109 202 -6 765 222 192 45 chr4 13533600 13533866 -170754796 + MLT1A1 LTR MaLR 1 305 -60 922 230 5 15 chr4 13533866 13534104 -170754558 - AluJb SINE Alu 0 320 85 381 103 17 0 chr4 13534108 13534166 -170754496 + MLT1A1 LTR MaLR 398 456 -1 1102 242 70 15 chr4 13535073 13535416 -170753246 + MLT2D LTR ERVL 1 362 -52 208 276 0 0 chr4 13535426 13535484 -170753178 + CT-rich Low_complexity Low_complexity 2 59 0 434 228 0 0 chr4 13535597 13535675 -170752987 + Tigger5 DNA MER2_type 1 78 -2245 362 221 26 0 chr4 13535675 13535752 -170752910 - Tigger5 DNA MER2_type -3 2320 2242 * 423 198 0 12 chr4 13535742 13535823 -170752839 + Tigger5 DNA MER2_type 2242 2321 -2 187 250 0 19 chr4 13536774 13536826 -170751836 + MIR SINE MIR 161 211 -51 999 243 123 7 chr4 13537973 13538274 -170750388 + LTR52 LTR ERVL 84 419 -2 1716 256 45 14 chr4 13538275 13538848 -170749814 + L1ME2 LINE L1 5311 5901 -263 863 306 37 42 chr4 13538848 13539201 -170749461 + LTR16B LTR ERVL 11 361 -103 2318 157 26 17 chr4 13539227 13539642 -170749020 + L1MA8 LINE L1 5453 5871 -420 2611 245 36 40 chr4 13539696 13540263 -170748399 + L1ME2 LINE L1 5140 5701 -463 1809 177 38 16 chr4 13540263 13540630 -170748032 - THE1C LTR MaLR 0 375 1 2611 245 36 40 chr4 13540630 13541085 -170747577 + L1ME2 LINE L1 5701 6156 -8 454 241 86 9 chr4 13541888 13542004 -170746658 - MER63 DNA MER1_type -311 751 1 28 0 0 0 chr4 13542023 13542051 -170746611 + AT_rich Low_complexity Low_complexity 1 28 0 291 305 24 0 chr4 13542171 13542253 -170746409 - MIR SINE MIR -116 146 63 2241 105 129 8 chr4 13542285 13542665 -170745997 + LTR7 LTR ERV1 23 448 -2 19144 96 45 14 chr4 13542667 13545567 -170743095 + HERVH LTR ERV1 1 2987 -4726 6276 74 5 5 chr4 13545561 13546415 -170742247 + HERVH LTR ERV1 3140 3993 -3720 * 4330 148 0 1 chr4 13546417 13547080 -170741582 + HERVH LTR ERV1 4488 5149 -2564 1330 148 19 0 chr4 13547081 13547297 -170741365 + HERVH LTR ERV1 5600 5819 -1894 2440 90 45 16 chr4 13547297 13547676 -170740986 + HERVH LTR ERV1 7324 7713 0 2520 72 130 12 chr4 13547676 13548077 -170740585 + LTR7 LTR ERV1 1 448 -2 339 284 35 71 chr4 13548321 13548462 -170740200 + MIR SINE MIR 6 141 -121 261 341 24 35 chr4 13549343 13549513 -170739149 - MIR SINE MIR -65 197 30 2227 175 44 5 chr4 13549674 13550086 -170738576 + MSTA LTR MaLR 1 428 0 21 0 0 0 chr4 13550134 13550155 -170738507 + AT_rich Low_complexity Low_complexity 1 21 0 2249 110 0 3 chr4 13550574 13550883 -170737779 - AluSc SINE Alu 0 309 2 23 54 0 0 chr4 13550885 13550922 -170737740 + AT_rich Low_complexity Low_complexity 1 37 0 200 338 65 19 chr4 13551531 13551685 -170736977 + L2 LINE L2 2153 2313 -1001 201 39 0 0 chr4 13552717 13552743 -170735919 + (CA)n Simple_repeat Simple_repeat 1 26 0 1887 169 51 37 chr4 13552937 13553482 -170735180 - MLT2A2 LTR ERVL 0 554 1 260 239 34 34 chr4 13553604 13553692 -170734970 + MIR SINE MIR 75 162 -100 573 321 101 25 chr4 13553733 13554088 -170734574 + L2 LINE L2 2007 2388 -926 430 354 25 22 chr4 13554088 13554362 -170734300 + L2 LINE L2 2505 2779 -535 300 296 65 19 chr4 13555799 13555907 -170732755 - MIR SINE MIR -27 235 123 322 178 178 0 chr4 13557269 13557376 -170731286 - L1MB4 LINE L1 -6 6174 6049 230 342 40 59 chr4 13557377 13557579 -170731083 + L2 LINE L2 2702 2899 -415 193 309 0 0 chr4 13557701 13557756 -170730906 - MIR SINE MIR -118 144 90 2129 56 7 0 chr4 13558040 13558310 -170730352 - AluY SINE Alu -39 272 1 21 0 0 0 chr4 13558831 13558852 -170729810 + AT_rich Low_complexity Low_complexity 1 21 0 222 328 15 60 chr4 13559389 13559523 -170729139 + MER5A DNA MER1_type 8 135 -54 2028 64 64 0 chr4 13559976 13560282 -170728380 - AluY SINE Alu 0 323 1 184 396 10 0 chr4 13560300 13560401 -170728261 - MIR SINE MIR -128 134 33 207 293 102 48 chr4 13560819 13560986 -170727676 - MIR SINE MIR -1 261 86 242 347 56 7 chr4 13561674 13561818 -170726844 - MIR SINE MIR -111 151 1 273 297 78 39 chr4 13562946 13563074 -170725588 + L2 LINE L2 3165 3297 -16 25 31 0 0 chr4 13564123 13564155 -170724507 + AT_rich Low_complexity Low_complexity 1 32 0 285 337 60 12 chr4 13564732 13564898 -170723764 + MIR SINE MIR 47 220 -42 2928 101 21 0 chr4 13565225 13565659 -170723003 - L1PA13 LINE L1 -4 6159 5717 786 199 4 132 chr4 13566534 13566785 -170721877 + MER20 DNA MER1_type 1 219 0 221 290 16 0 chr4 13567087 13567149 -170721513 - MIR SINE MIR -42 220 158 1020 268 57 66 chr4 13567149 13567698 -170720964 - MLT1H1 LTR MaLR 0 555 12 686 184 7 34 chr4 13568553 13568700 -170719962 - FLAM_C SINE Alu 0 143 1 189 0 0 0 chr4 13568967 13568988 -170719674 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 2225 128 22 8 chr4 13569080 13569446 -170719216 + THE1C LTR MaLR 1 371 -4 9308 138 49 19 chr4 13569450 13570984 -170717678 + THE1C-int LTR MaLR 1 1580 0 1880 169 16 39 chr4 13570984 13571368 -170717294 + THE1C LTR MaLR 1 375 0 958 49 81 0 chr4 13572670 13572793 -170715869 + MER85 DNA T2_type 1 133 -6 230 191 16 79 chr4 13572759 13572822 -170715840 - MER85 DNA T2_type -6 133 75 * 295 150 3 60 chr4 13573165 13573232 -170715430 + L1M1 LINE L1 5525 5588 -714 1749 183 3 3 chr4 13574506 13574791 -170713871 - AluJb SINE Alu -27 285 1 1428 189 3 6 chr4 13575338 13575650 -170713012 - L1P LINE L1 -4612 1534 1224 4041 307 96 14 chr4 13575658 13577131 -170711531 - L1M2a LINE L1 -5517 1651 48 297 0 0 0 chr4 13577131 13577164 -170711498 + (TG)n Simple_repeat Simple_repeat 2 34 0 4041 307 96 14 chr4 13577164 13577204 -170711458 - L1M2a LINE L1 -7120 48 13 2159 124 0 6 chr4 13579227 13579541 -170709121 - AluSq SINE Alu -1 312 1 367 309 76 57 chr4 13580516 13581195 -170707467 + L1MEc LINE L1 702 1403 -4993 2018 155 25 38 chr4 13581195 13581563 -170707099 + THE1B LTR MaLR 2 364 0 367 309 76 57 chr4 13581563 13581748 -170706914 + L1MEc LINE L1 1403 1583 -4813 1641 255 49 7 chr4 13581753 13582185 -170706477 - MLT1D LTR MaLR -2 503 54 304 350 45 0 chr4 13582186 13582343 -170706319 - HERVL LTR ERVL -3238 2416 2253 1488 246 23 11 chr4 13582362 13582712 -170705950 - MLT1A1 LTR MaLR -9 356 3 1728 293 29 55 chr4 13582713 13583301 -170705361 - HERVL LTR ERVL -2753 2260 1726 2253 116 0 0 chr4 13583301 13583603 -170705059 - AluSc SINE Alu -7 302 1 1728 293 29 55 chr4 13583603 13583892 -170704770 - HERVL LTR ERVL -3287 1726 1431 580 328 47 19 chr4 13584398 13584654 -170704008 - LTR16A LTR ERVL -78 372 110 698 244 48 26 chr4 13584748 13585019 -170703643 + L1ME2 LINE L1 5333 5609 -555 409 238 20 10 chr4 13585023 13585124 -170703538 - MER8 DNA MER2_type 0 239 138 1475 264 14 68 chr4 13585170 13585743 -170702919 + L1ME2 LINE L1 5615 6156 -8 576 292 117 42 chr4 13586299 13586539 -170702123 + MIR SINE MIR 5 262 0 283 255 28 66 chr4 13587026 13587132 -170701530 + MIR3 SINE MIR 69 170 -38 291 320 112 15 chr4 13587379 13587576 -170701086 + MIR SINE MIR 13 228 -34 730 290 108 5 chr4 13588065 13588279 -170700383 - MIR SINE MIR -10 252 17 403 362 34 37 chr4 13588595 13588946 -170699716 + L1MD2 LINE L1 4487 4836 -1310 1252 210 6 72 chr4 13589097 13589430 -170699232 - AluJo SINE Alu -1 311 1 2265 119 24 29 chr4 13589700 13590077 -170698585 - THE1C LTR MaLR 0 375 1 227 273 51 100 chr4 13590129 13590440 -170698222 + L1MD2 LINE L1 5314 5609 -2199 9059 36 2 1 chr4 13590464 13591534 -170697128 + MER11C LTR ERVK 1 1071 0 279 313 52 37 chr4 13591703 13591837 -170696825 - MIR SINE MIR -104 158 23 473 263 165 64 chr4 13591896 13592193 -170696469 - MLT1H LTR MaLR -2 547 221 667 225 78 0 chr4 13592459 13592601 -170696061 + MER58B DNA MER1_type 185 337 -4 319 294 75 41 chr4 13593520 13593666 -170694996 + MIR SINE MIR 41 191 -71 219 69 0 0 chr4 13593960 13593989 -170694673 + (GGAA)n Simple_repeat Simple_repeat 1 29 0 283 309 41 10 chr4 13594895 13594992 -170693670 + MER94 DNA DNA 5 104 -30 425 251 120 24 chr4 13595167 13595334 -170693328 - LTR33A LTR ERVL -15 508 326 248 342 40 27 chr4 13595470 13595619 -170693043 - LTR33 LTR ERVL -322 199 49 227 353 90 8 chr4 13597271 13597404 -170691258 + MIR3 SINE MIR 55 198 -10 237 65 0 0 chr4 13597427 13597455 -170691207 + (TG)n Simple_repeat Simple_repeat 1 59 0 237 65 0 0 chr4 13597455 13597486 -170691176 + (TG)n Simple_repeat Simple_repeat 2 32 0 890 212 35 69 chr4 13597497 13597785 -170690877 + L1MD2 LINE L1 6072 6349 -10 1108 246 78 89 chr4 13597789 13598640 -170690022 + L1M4 LINE L1 4255 5095 -1051 213 65 0 0 chr4 13598660 13598691 -170689971 + (TATG)n Simple_repeat Simple_repeat 2 32 0 1902 202 28 4 chr4 13598862 13599323 -170689339 + L1 LINE L1 4021 4492 -1654 862 355 27 23 chr4 13599338 13599778 -170688884 + L1M3a LINE L1 11 452 -5503 233 382 42 0 chr4 13599907 13600051 -170688611 + L1M3a LINE L1 305 454 -5501 233 325 40 16 chr4 13600510 13600636 -170688026 + L1M3a LINE L1 547 675 -5280 278 368 28 0 chr4 13600653 13600797 -170687865 + L1M3a LINE L1 552 699 -5256 1531 290 70 34 chr4 13600940 13602483 -170686179 + L1MA7 LINE L1 245 1591 -4443 1097 241 122 6 chr4 13602483 13602835 -170685827 + MSTD LTR MaLR 4 396 0 1531 290 70 34 chr4 13602835 13603658 -170685004 + L1MA7 LINE L1 1591 2384 -3650 890 258 0 26 chr4 13603673 13603906 -170684756 - MER46A DNA MER2_type -9 227 1 1963 265 36 8 chr4 13603907 13604519 -170684143 + L1MA7 LINE L1 2384 3012 -3022 * 9220 136 38 10 chr4 13604513 13605954 -170682708 + THE1C-int LTR MaLR 99 1579 -1 1781 176 24 21 chr4 13605955 13606329 -170682333 + THE1C LTR MaLR 1 375 0 630 242 6 0 chr4 13606340 13606518 -170682144 + L1MA7 LINE L1 3068 3246 -2788 2867 136 64 50 chr4 13606518 13606963 -170681699 + LTR24C LTR ERV1 1 459 -176 2226 100 17 0 chr4 13606963 13607262 -170681400 + AluSp SINE Alu 1 304 -9 2867 136 64 50 chr4 13607262 13607441 -170681221 + LTR24C LTR ERV1 459 634 -1 738 230 19 69 chr4 13607442 13607700 -170680962 + L1MA7 LINE L1 3302 3546 -2488 3594 99 55 33 chr4 13607700 13608666 -170679996 - MER11A LTR ERVK 0 1266 1 5416 220 37 15 chr4 13608666 13610175 -170678487 + L1MA7 LINE L1 3541 5174 -860 1262 200 34 0 chr4 13610177 13610412 -170678250 - MSTB1 LTR MaLR 0 432 190 1329 165 39 16 chr4 13610429 13610684 -170677978 - MSTB1 LTR MaLR -171 261 1 5329 223 65 87 chr4 13610684 13612031 -170676631 - MSTB1-int LTR MaLR 0 1651 346 1781 73 13 4 chr4 13612031 13612265 -170676397 - AluY SINE Alu -13 298 63 5329 223 65 87 chr4 13612265 13612600 -170676062 - MSTB1-int LTR MaLR -1305 346 5 2111 157 89 10 chr4 13612609 13613004 -170675658 - MSTB1 LTR MaLR -6 426 1 4314 208 24 14 chr4 13613005 13614002 -170674660 + L1MA7 LINE L1 5173 6179 0 3341 214 31 41 chr4 13614018 13614296 -170674366 + L1MB2 LINE L1 4477 4756 -1415 1417 257 16 13 chr4 13614296 13614669 -170673993 + MLT1A2 LTR MaLR 1 374 0 3341 214 31 41 chr4 13614669 13615560 -170673102 + L1MB2 LINE L1 4756 5654 -517 2447 62 10 3 chr4 13615560 13615864 -170672798 + AluY SINE Alu 1 306 -5 3341 214 31 41 chr4 13615864 13616379 -170672283 + L1MB2 LINE L1 5654 6119 -52 2075 135 0 0 chr4 13616379 13616675 -170671987 + AluSq SINE Alu 1 296 -17 3341 214 31 41 chr4 13616675 13616728 -170671934 + L1MB2 LINE L1 6119 6171 0 523 231 55 41 chr4 13616721 13617005 -170671657 + L1ME LINE L1 5177 5466 -698 * 205 329 208 7 chr4 13617529 13617678 -170670984 - MIR SINE MIR -32 230 52 2926 201 131 1 chr4 13618264 13619011 -170669651 - L1MB7 LINE L1 -19 6165 5322 1523 210 31 42 chr4 13619018 13619403 -170669259 - L1MB5 LINE L1 -13 6161 5781 453 286 0 6 chr4 13619503 13619678 -170668984 - L1MB7 LINE L1 -873 5273 5100 1649 264 93 26 chr4 13619693 13620459 -170668203 - L1MB7 LINE L1 -1152 4994 4178 244 198 12 25 chr4 13620495 13620576 -170668086 + CT-rich Low_complexity Low_complexity 1 80 0 203 325 25 38 chr4 13621241 13621321 -170667341 - MIR3 SINE MIR -6 202 124 21 0 0 0 chr4 13622150 13622171 -170666491 + AT_rich Low_complexity Low_complexity 1 21 0 366 304 224 34 chr4 13622472 13623055 -170665607 + L2 LINE L2 2587 3283 -30 2050 126 13 13 chr4 13623073 13623391 -170665271 + THE1C LTR MaLR 58 375 0 1600 166 62 3 chr4 13623513 13623803 -170664859 - AluSx SINE Alu -5 307 1 221 214 29 0 chr4 13623973 13624043 -170664619 + (TA)n Simple_repeat Simple_repeat 1 72 0 389 93 0 0 chr4 13624154 13624208 -170664454 + MLT2D LTR ERVL 1 54 -360 28 29 0 0 chr4 13624208 13624243 -170664419 + AT_rich Low_complexity Low_complexity 1 35 0 229 212 0 0 chr4 13624258 13624324 -170664338 - L1MC4 LINE L1 -1340 6702 6637 873 173 97 0 chr4 13624427 13624612 -170664050 - MLT2D LTR ERVL -211 203 1 22 35 0 0 chr4 13625141 13625170 -170663492 + AT_rich Low_complexity Low_complexity 1 29 0 1258 222 21 31 chr4 13626021 13626404 -170662258 - Charlie4a DNA MER1_type -54 454 76 22 0 0 0 chr4 13626404 13626426 -170662236 + AT_rich Low_complexity Low_complexity 1 22 0 2903 278 54 48 chr4 13626542 13628641 -170660021 + L1M4c LINE L1 1 1799 -4411 303 323 70 21 chr4 13628669 13628763 -170659899 + L1M4c LINE L1 1831 1919 -4293 2159 127 0 0 chr4 13628763 13629070 -170659592 + AluSc SINE Alu 1 307 -2 303 323 70 21 chr4 13629070 13629161 -170659501 + L1M4c LINE L1 1919 2025 -4187 485 316 7 7 chr4 13629223 13629362 -170659300 + L2 LINE L2 3175 3313 0 272 358 37 47 chr4 13629371 13629670 -170658992 - L2 LINE L2 -710 2604 2309 303 192 0 0 chr4 13629710 13629788 -170658874 + GA-rich Low_complexity Low_complexity 1 78 0 284 375 69 0 chr4 13630011 13630171 -170658491 - L2 LINE L2 -1285 2029 1859 7293 43 0 2 chr4 13630444 13631821 -170656841 + L1PA4 LINE L1 4778 6153 -2 272 315 101 22 chr4 13632275 13632453 -170656209 + L2 LINE L2 3112 3303 -10 244 308 20 25 chr4 13632740 13632938 -170655724 + L1M4c LINE L1 3348 3544 -2666 492 324 68 56 chr4 13634115 13634763 -170653899 + L1M4 LINE L1 3295 3950 -2196 189 333 75 21 chr4 13634901 13634994 -170653668 + MIR SINE MIR 18 115 -147 2539 65 3 0 chr4 13635490 13635799 -170652863 - AluY SINE Alu -1 310 1 330 316 11 0 chr4 13635826 13635921 -170652741 - MIR SINE MIR -73 135 40 1798 212 64 25 chr4 13636328 13636767 -170651895 + MLT1C LTR MaLR 12 467 0 2080 113 0 0 chr4 13637308 13637582 -170651080 - AluSq SINE Alu -17 296 23 205 327 18 62 chr4 13637621 13637734 -170650928 - L2 LINE L2 -502 2812 2705 669 131 11 148 chr4 13637869 13638052 -170650610 - AluJb SINE Alu -1 311 154 34 65 0 0 chr4 13638541 13638603 -170650059 + AT_rich Low_complexity Low_complexity 1 62 0 523 343 121 41 chr4 13638715 13639030 -170649632 + LTR16C LTR ERVL 128 467 -24 488 233 72 76 chr4 13639195 13639457 -170649205 - L1ME3A LINE L1 -230 5940 5680 287 206 29 15 chr4 13639548 13639616 -170649046 - MLT1I LTR MaLR -271 138 70 2165 105 10 0 chr4 13639845 13640140 -170648522 - AluSg SINE Alu -12 298 1 21 0 0 0 chr4 13640180 13640201 -170648461 + AT_rich Low_complexity Low_complexity 1 21 0 261 0 0 0 chr4 13640240 13640269 -170648393 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 239 330 79 32 chr4 13640645 13640924 -170647738 + L1MEd LINE L1 569 860 -5259 202 314 101 44 chr4 13641832 13641991 -170646671 - MIR SINE MIR -1 261 94 426 156 0 0 chr4 13642022 13642099 -170646563 - L1PA16 LINE L1 -4 6162 6086 22 0 0 0 chr4 13642270 13642292 -170646370 + AT_rich Low_complexity Low_complexity 1 22 0 206 161 0 36 chr4 13642720 13642776 -170645886 + (CATA)n Simple_repeat Simple_repeat 2 55 0 2274 172 54 5 chr4 13643138 13643544 -170645118 + MSTB LTR MaLR 1 426 0 8178 178 60 5 chr4 13643544 13645074 -170643588 + MSTB-int LTR MaLR 1 1614 -37 542 189 0 0 chr4 13645091 13645186 -170643476 + MSTB LTR MaLR 1 95 -331 2871 122 24 2 chr4 13645190 13645641 -170643021 + L1PA8 LINE L1 5712 6172 0 275 325 20 60 chr4 13645827 13645978 -170642684 + MIR SINE MIR 114 258 -4 180 0 0 0 chr4 13646335 13646355 -170642307 + (T)n Simple_repeat Simple_repeat 1 20 0 259 344 0 0 chr4 13646740 13646830 -170641832 + MIR SINE MIR 118 207 -55 1753 260 59 36 chr4 13646942 13647572 -170641090 - L1MC4 LINE L1 -140 7902 7259 1261 255 67 36 chr4 13647581 13648133 -170640529 - L1MC4 LINE L1 -809 6999 6452 1789 188 8 44 chr4 13649124 13649914 -170638748 - L1MB1 LINE L1 -532 5636 4880 329 169 17 0 chr4 13649912 13649971 -170638691 + L1MB1 LINE L1 5660 5719 -449 * 630 109 0 0 chr4 13649972 13650064 -170638598 - AluSc SINE Alu -217 92 1 1826 181 48 5 chr4 13650065 13650436 -170638226 + L1MB1 LINE L1 5781 6167 -1 190 372 0 35 chr4 13650458 13650544 -170638118 + MIR SINE MIR 19 101 -107 323 348 57 17 chr4 13650702 13650932 -170637730 + MIR SINE MIR 3 241 -21 243 374 65 23 chr4 13651903 13652117 -170636545 + L2 LINE L2 2384 2606 -708 584 240 35 35 chr4 13652360 13652560 -170636102 + MER3 DNA MER1_type 10 209 0 301 262 56 40 chr4 13652683 13652809 -170635853 + MLT1F1 LTR MaLR 440 567 0 211 338 60 92 chr4 13653056 13653337 -170635325 + L2 LINE L2 3000 3271 -1 216 337 178 0 chr4 13653565 13653666 -170634996 + MIR SINE MIR 20 138 -124 298 250 43 11 chr4 13654327 13654419 -170634243 + MIR SINE MIR 112 206 -56 1714 173 94 0 chr4 13654768 13655086 -170633576 + MER7A DNA MER2_type 1 346 0 7436 31 1 0 chr4 13655555 13656470 -170632192 + L1PA4 LINE L1 5254 6169 0 34 79 0 0 chr4 13656696 13656772 -170631890 + AT_rich Low_complexity Low_complexity 1 76 0 276 339 62 27 chr4 13657770 13657882 -170630780 + L2 LINE L2 3137 3252 -20 196 289 19 0 chr4 13658001 13658053 -170630609 + L2 LINE L2 3246 3298 -15 34 24 0 0 chr4 13658053 13658094 -170630568 + AT_rich Low_complexity Low_complexity 1 41 0 2051 62 106 0 chr4 13658624 13658899 -170629763 - AluY SINE Alu -7 304 1 245 288 0 12 chr4 13659074 13659154 -170629508 + (TA)n Simple_repeat Simple_repeat 2 80 0 231 36 0 0 chr4 13659154 13659182 -170629480 + (CA)n Simple_repeat Simple_repeat 2 29 0 21 0 0 0 chr4 13659845 13659866 -170628796 + AT_rich Low_complexity Low_complexity 1 21 0 1709 164 0 41 chr4 13659959 13660251 -170628411 - AluJb SINE Alu -30 282 3 2628 57 40 6 chr4 13660551 13660901 -170627761 + L1PA8 LINE L1 5810 6171 -1 431 139 0 13 chr4 13661156 13661235 -170627427 + (CA)n Simple_repeat Simple_repeat 2 79 0 515 293 44 68 chr4 13661473 13661678 -170626984 + LTR16C LTR ERVL 167 366 -125 * 1408 199 46 69 chr4 13661668 13661867 -170626795 - MLT1B LTR MaLR -6 384 197 441 0 0 0 chr4 13661867 13661916 -170626746 + (CA)n Simple_repeat Simple_repeat 2 50 0 1408 199 46 69 chr4 13661916 13662108 -170626554 - MLT1B LTR MaLR -193 197 2 209 219 0 0 chr4 13663045 13663086 -170625576 + MIR SINE MIR 99 139 -69 1148 266 7 3 chr4 13663220 13663517 -170625145 + L1MD3 LINE L1 7526 7823 -172 493 263 11 6 chr4 13663743 13663922 -170624740 + (TA)n Simple_repeat Simple_repeat 1 180 0 259 200 0 18 chr4 13664267 13664322 -170624340 + MIR SINE MIR 98 151 -57 367 346 39 8 chr4 13665565 13665695 -170622967 + MIR3 SINE MIR 10 143 -65 452 284 105 37 chr4 13665981 13666171 -170622491 - L2 LINE L2 0 3313 3111 224 327 10 20 chr4 13666605 13666706 -170621956 - L2 LINE L2 -4 3309 3210 220 336 0 49 chr4 13667004 13667126 -170621536 + MIR SINE MIR 91 206 -56 850 299 107 10 chr4 13667725 13668116 -170620546 - LTR16C LTR ERVL 0 491 63 7448 31 11 0 chr4 13668180 13669302 -170619360 - L1PA4 LINE L1 -5 6150 5025 473 296 19 31 chr4 13669302 13669461 -170619201 - MIR SINE MIR -93 169 13 222 37 0 0 chr4 13670771 13670798 -170617864 + (CA)n Simple_repeat Simple_repeat 2 28 0 210 328 43 35 chr4 13671181 13671297 -170617365 - L2 LINE L2 -23 3290 3174 341 325 78 7 chr4 13671648 13671802 -170616860 + MIR SINE MIR 59 223 -39 2478 106 11 16 chr4 13671998 13672375 -170616287 - THE1C LTR MaLR 0 375 1 316 185 37 19 chr4 13672391 13672499 -170616163 + (TA)n Simple_repeat Simple_repeat 1 110 0 277 240 7 52 chr4 13672502 13672656 -170616006 + A-rich Low_complexity Low_complexity 6 152 0 885 135 44 1 chr4 13672656 13672811 -170615851 - L1MA3 LINE L1 -21 6270 6109 2357 234 29 27 chr4 13672936 13673497 -170615165 - MER68 LTR ERV1 0 562 1 1669 196 40 14 chr4 13673943 13674290 -170614372 + MLT1A1 LTR MaLR 10 365 0 393 246 57 41 chr4 13674462 13674584 -170614078 - L2 LINE L2 -3 3310 3187 201 324 42 0 chr4 13674604 13674675 -170613987 - L3 LINE CR1 -881 696 623 361 315 35 56 chr4 13675028 13675225 -170613437 - L3 LINE CR1 -1368 209 17 2154 99 6 16 chr4 13675328 13675641 -170613021 - AluSg SINE Alu 0 310 1 457 298 30 0 chr4 13676221 13676352 -170612310 + MIR3 SINE MIR 20 154 -54 26 0 0 0 chr4 13676939 13676965 -170611697 + AT_rich Low_complexity Low_complexity 1 26 0 5023 172 45 22 chr4 13677912 13678398 -170610264 - L1MA4 LINE L1 0 6300 5827 2355 131 14 3 chr4 13678398 13678758 -170609904 + THE1B LTR MaLR 1 364 0 5023 172 45 22 chr4 13678758 13680237 -170608425 - L1MA4 LINE L1 -473 5827 4305 272 229 48 12 chr4 13680268 13680351 -170608311 + L1ME LINE L1 5529 5614 -507 271 234 204 61 chr4 13680555 13680786 -170607876 - ORSL DNA AcHobo 0 275 12 899 367 83 0 chr4 13681162 13681622 -170607040 - MLT1G LTR MaLR -2 588 91 299 271 82 86 chr4 13681730 13681955 -170606707 - MLT1G-int LTR MaLR -6 1365 1141 207 0 0 0 chr4 13681955 13681978 -170606684 + (TC)n Simple_repeat Simple_repeat 1 23 0 * 360 0 0 0 chr4 13681977 13682017 -170606645 + (CA)n Simple_repeat Simple_repeat 1 40 0 299 271 82 86 chr4 13681978 13682071 -170606591 - MLT1G-int LTR MaLR -230 1141 1087 479 211 114 53 chr4 13682380 13682494 -170606168 + FLAM_C SINE Alu 1 121 -22 219 69 0 0 chr4 13682494 13682523 -170606139 + (TA)n Simple_repeat Simple_repeat 1 29 0 25218 92 12 35 chr4 13682853 13686739 -170601923 + L1P LINE L1 1550 5347 -799 1093 57 7 0 chr4 13686741 13686882 -170601780 + L1PA7 LINE L1 6008 6149 -5 3416 246 52 21 chr4 13686889 13688146 -170600516 + L1MA9 LINE L1 2260 3555 -2591 3448 220 59 12 chr4 13688149 13689155 -170599507 + L1MA9 LINE L1 4407 5485 -827 4020 136 26 80 chr4 13689155 13689984 -170598678 + LTR1 LTR ERV1 1 785 0 3448 220 59 12 chr4 13689984 13690253 -170598409 + L1MA9 LINE L1 5485 5740 -572 422 33 0 33 chr4 13690259 13690320 -170598342 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 988 269 13 16 chr4 13690341 13690650 -170598012 - L1 LINE L1 -2170 3976 3669 655 144 35 11 chr4 13690650 13690824 -170597838 + (TA)n Simple_repeat Simple_repeat 2 179 0 1513 243 40 28 chr4 13690837 13691336 -170597326 + L1MA9 LINE L1 5770 6274 -38 211 310 20 40 chr4 13691548 13691648 -170597014 + L2 LINE L2 3216 3313 0 290 286 168 6 chr4 13691982 13692143 -170596519 - LTR16C LTR ERVL -8 483 297 503 240 152 54 chr4 13692970 13693013 -170595649 + MER58A DNA MER1_type 1 38 -2382 2244 112 0 3 chr4 13693013 13693316 -170595346 + AluSq SINE Alu 1 302 -11 503 240 152 54 chr4 13693316 13693476 -170595186 + MER58A DNA MER1_type 38 224 0 1750 140 27 10 chr4 13694627 13694919 -170593743 - AluSq SINE Alu -6 307 11 958 121 80 2 chr4 13695119 13695358 -170593304 - MER4E LTR ERV1 0 766 460 1339 98 0 0 chr4 13695359 13695543 -170593119 - MER41B LTR ERV1 0 635 452 191 273 146 36 chr4 13696970 13697080 -170591582 + MIR SINE MIR 32 153 -109 2223 92 0 35 chr4 13697566 13697883 -170590779 + AluSg SINE Alu 1 306 -4 225 0 0 0 chr4 13698540 13698565 -170590097 + (TA)n Simple_repeat Simple_repeat 1 25 0 951 215 82 90 chr4 13699119 13699487 -170589175 - MLT1A1 LTR MaLR 0 365 1 351 0 0 0 chr4 13699657 13699696 -170588966 + (TG)n Simple_repeat Simple_repeat 1 39 0 796 164 82 0 chr4 13700916 13701111 -170587551 - L1P LINE L1 -2877 3269 3059 1971 232 13 2 chr4 13701967 13702364 -170586298 + MER72 LTR ERV1 322 722 0 1644 263 34 27 chr4 13702365 13703043 -170585619 - L1ME1 LINE L1 -292 5874 5193 218 314 14 14 chr4 13704362 13704432 -170584230 + L2 LINE L2 3199 3268 -4 262 269 51 13 chr4 13704434 13704512 -170584150 - MIR3 SINE MIR -46 162 82 279 0 0 0 chr4 13704987 13705018 -170583644 + (T)n Simple_repeat Simple_repeat 1 31 0 277 352 91 30 chr4 13705027 13705257 -170583405 + MLT1K LTR MaLR 59 302 -286 472 271 47 16 chr4 13706039 13706168 -170582494 + LTR16C LTR ERVL 189 321 -170 2032 185 37 32 chr4 13706174 13706724 -170581938 - MLT2A2 LTR ERVL 0 554 1 278 285 101 13 chr4 13708182 13708340 -170580322 - L3 LINE CR1 -309 1268 1097 2312 242 30 20 chr4 13708552 13709156 -170579506 + MLT1E3 LTR MaLR 7 616 -8 408 294 168 9 chr4 13709300 13709514 -170579148 + MIR SINE MIR 1 248 -14 3759 67 6 2 chr4 13709840 13710334 -170578328 - L1PA7 LINE L1 0 6154 5659 2427 60 10 0 chr4 13710334 13710714 -170577948 + L1P3 LINE L1 5199 5581 -573 2657 173 136 25 chr4 13711217 13711871 -170576791 - LTR8A LTR ERV1 0 727 1 2658 113 76 2 chr4 13712239 13712672 -170575990 + MER4C LTR ERV1 1 465 0 437 250 8 23 chr4 13712803 13712931 -170575731 + MER4B LTR ERV1 1 126 -484 3753 90 47 8 chr4 13712943 13713476 -170575186 + MER41A LTR ERV1 1 554 0 23 54 0 0 chr4 13713766 13713803 -170574859 + AT_rich Low_complexity Low_complexity 1 37 0 249 292 28 21 chr4 13713834 13713978 -170574684 + L1ME1 LINE L1 57 201 -6195 378 0 0 0 chr4 13714115 13714157 -170574505 + (CA)n Simple_repeat Simple_repeat 2 43 0 326 304 63 0 chr4 13714507 13714665 -170573997 + L1ME1 LINE L1 776 943 -5453 205 109 36 36 chr4 13714676 13714731 -170573931 + (TA)n Simple_repeat Simple_repeat 2 56 0 373 264 49 28 chr4 13714750 13714894 -170573768 + L1ME1 LINE L1 1362 1508 -4888 745 232 24 37 chr4 13714915 13715181 -170573481 + MLT2D LTR ERVL 77 337 -77 243 0 0 0 chr4 13715181 13715208 -170573454 + (CA)n Simple_repeat Simple_repeat 1 27 0 604 295 65 21 chr4 13715250 13715633 -170573029 + L1ME1 LINE L1 1532 1931 -4465 295 309 54 12 chr4 13715645 13715813 -170572849 + LTR41 LTR ERVL 13 187 -586 591 282 44 65 chr4 13716121 13716461 -170572201 + HERVL LTR ERVL 1782 2114 -3540 901 289 68 24 chr4 13716462 13717127 -170571535 + L1ME1 LINE L1 3358 4051 -2164 900 195 15 45 chr4 13717269 13717469 -170571193 - MER72 LTR ERV1 -528 194 1 452 253 25 101 chr4 13717469 13717768 -170570894 + L1ME2 LINE L1 5875 6155 -7 1857 258 60 27 chr4 13717779 13718386 -170570276 + L1ME1 LINE L1 5175 5832 -403 2024 150 97 8 chr4 13718386 13718779 -170569883 - MSTA LTR MaLR 0 428 1 1857 258 60 27 chr4 13718779 13719162 -170569500 + L1ME1 LINE L1 5832 6201 -34 1233 217 108 25 chr4 13719271 13719631 -170569031 - MLT1B LTR MaLR 0 390 1 1251 235 93 8 chr4 13719632 13720007 -170568655 - MLT1B-int LTR MaLR -1 1370 964 1296 216 73 6 chr4 13720202 13720559 -170568103 - L1MA7 LINE L1 -8 6283 5903 993 201 86 0 chr4 13720566 13720834 -170567828 + L1M2 LINE L1 5087 5377 -769 295 206 0 0 chr4 13720878 13720941 -170567721 + L1MA8 LINE L1 6207 6269 -22 1279 152 4 16 chr4 13721044 13721287 -170567375 + L1M2 LINE L1 5384 5623 -668 279 0 0 0 chr4 13721309 13721340 -170567322 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1801 239 16 13 chr4 13721393 13721771 -170566891 - MLT1B-int LTR MaLR -485 886 510 1912 178 78 18 chr4 13721771 13722171 -170566491 + MSTB LTR MaLR 1 424 -2 1801 239 16 13 chr4 13722171 13722472 -170566190 - MLT1B-int LTR MaLR -861 510 1 353 202 42 76 chr4 13722472 13722591 -170566071 - MLT2B1 LTR ERVL 0 520 330 180 336 58 0 chr4 13722633 13722737 -170565925 + MIR SINE MIR 147 256 -6 242 182 0 0 chr4 13724316 13724360 -170564302 - MLT2C2 LTR ERVL 0 464 421 931 32 16 0 chr4 13724361 13724484 -170564178 + (TAGA)n Simple_repeat Simple_repeat 2 126 0 1515 216 20 0 chr4 13724484 13724827 -170563835 - MER47A DNA MER2_type -6 360 11 180 152 0 0 chr4 13724991 13725024 -170563638 + CT-rich Low_complexity Low_complexity 4 36 0 1282 65 0 0 chr4 13725076 13725245 -170563417 - L1PA4 LINE L1 0 6155 5987 1675 33 0 0 chr4 13725245 13725455 -170563207 + L1PA4 LINE L1 5755 5964 -191 23 0 0 0 chr4 13725492 13725515 -170563147 + AT_rich Low_complexity Low_complexity 1 23 0 2058 261 50 30 chr4 13725646 13725769 -170562893 - L1ME1 LINE L1 -4 6162 6043 309 51 0 0 chr4 13725769 13725808 -170562854 + (CA)n Simple_repeat Simple_repeat 1 39 0 2058 261 50 30 chr4 13725808 13726540 -170562122 - L1ME1 LINE L1 -123 6043 5290 962 285 87 30 chr4 13726668 13727142 -170561520 + MLT1J LTR MaLR 3 503 -8 1644 121 13 86 chr4 13727173 13727486 -170561176 + AluJo SINE Alu 23 312 0 1134 325 12 12 chr4 13730033 13730457 -170558205 - LTR16A LTR ERVL 0 450 27 594 261 38 52 chr4 13730872 13731083 -170557579 - MIR SINE MIR -2 260 53 310 289 35 28 chr4 13731141 13731283 -170557379 + MLT1H LTR MaLR 12 154 -395 2424 77 0 3 chr4 13731323 13731634 -170557028 - AluY SINE Alu 0 311 2 25 0 0 0 chr4 13732471 13732496 -170556166 + AT_rich Low_complexity Low_complexity 1 25 0 28 0 0 0 chr4 13732729 13732757 -170555905 + AT_rich Low_complexity Low_complexity 1 28 0 2220 122 6 14 chr4 13732966 13733310 -170555352 - MER1A DNA MER1_type 0 529 189 3512 75 135 170 chr4 13733313 13734274 -170554388 - pTR5 LTR ERV1 0 2438 6 769 185 43 37 chr4 13734304 13734466 -170554196 - MER1A DNA MER1_type -331 196 34 1017 236 9 0 chr4 13734716 13734936 -170553726 - MER58A DNA MER1_type 0 224 3 2147 139 0 0 chr4 13734970 13735279 -170553383 + AluSx SINE Alu 1 309 -3 1625 216 0 0 chr4 13735935 13736217 -170552445 - AluJo SINE Alu -30 282 1 1754 229 79 8 chr4 13736356 13736824 -170551838 - MLT1D LTR MaLR -2 503 3 310 352 20 108 chr4 13736846 13737244 -170551418 + L2 LINE L2 2870 3232 -40 22 56 0 0 chr4 13737273 13737309 -170551353 + AT_rich Low_complexity Low_complexity 1 36 0 278 212 29 123 chr4 13737718 13737888 -170550774 - MLT1L LTR MaLR -221 394 241 446 179 152 13 chr4 13737912 13738063 -170550599 + MER53 DNA DNA 11 182 -7 286 309 121 12 chr4 13738506 13738671 -170549991 + MIR SINE MIR 10 192 -70 446 75 15 0 chr4 13738808 13738875 -170549787 + (TG)n Simple_repeat Simple_repeat 1 68 0 1331 208 53 129 chr4 13738877 13739405 -170549257 - MLT2B3 LTR ERVL -46 508 21 1299 297 81 72 chr4 13739550 13740489 -170548173 + L2 LINE L2 2367 3304 -9 188 371 79 0 chr4 13740549 13740638 -170548024 - MIR SINE MIR -2 260 165 636 328 8 45 chr4 13740692 13740960 -170547702 + MIR SINE MIR 5 262 0 419 273 121 0 chr4 13740966 13741098 -170547564 - MIR SINE MIR -106 156 9 592 345 86 4 chr4 13741739 13741994 -170546668 + L2 LINE L2 2576 2851 -463 391 241 117 29 chr4 13742043 13742180 -170546482 - MIR SINE MIR -105 157 9 243 384 36 14 chr4 13742269 13742407 -170546255 + L2 LINE L2 2911 3051 -262 204 333 23 23 chr4 13742733 13742820 -170545842 - MIR SINE MIR -16 246 160 1173 214 77 14 chr4 13742820 13743105 -170545557 + AluJb SINE Alu 6 308 -4 271 314 76 0 chr4 13743124 13743229 -170545433 - MIR SINE MIR -64 144 32 191 178 0 110 chr4 13743458 13743531 -170545131 - L2 LINE L2 -560 2754 2690 23 0 0 0 chr4 13743787 13743810 -170544852 + AT_rich Low_complexity Low_complexity 1 23 0 269 356 19 0 chr4 13744030 13744134 -170544528 + MIR SINE MIR 20 125 -137 194 263 53 0 chr4 13744170 13744227 -170544435 + MIR SINE MIR 203 262 0 216 0 0 0 chr4 13744329 13744353 -170544309 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 413 284 52 22 chr4 13744644 13744778 -170543884 + MIR SINE MIR 16 153 -109 376 281 42 42 chr4 13745722 13745914 -170542748 + L2 LINE L2 3070 3261 -52 229 261 76 51 chr4 13746458 13746590 -170542072 + LTR33A LTR ERVL 358 496 -27 180 0 0 0 chr4 13746590 13746610 -170542052 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 229 261 76 51 chr4 13746610 13746634 -170542028 + LTR33A LTR ERVL 496 518 -5 222 298 134 68 chr4 13746889 13747181 -170541481 - L2 LINE L2 -459 2855 2545 30 0 0 0 chr4 13747727 13747757 -170540905 + AT_rich Low_complexity Low_complexity 1 30 0 543 305 75 17 chr4 13747882 13748121 -170540541 - MIR SINE MIR 0 262 10 262 309 0 21 chr4 13748200 13748297 -170540365 + MIR SINE MIR 74 168 -94 373 242 47 62 chr4 13749523 13749651 -170539011 - L2 LINE L2 0 3313 3188 774 323 124 68 chr4 13749759 13750526 -170538136 - L2 LINE L2 -356 2958 2149 1525 233 118 29 chr4 13750552 13750986 -170537676 + MLT2B1 LTR ERVL 3 484 -36 204 40 0 0 chr4 13750986 13751011 -170537651 + (TA)n Simple_repeat Simple_repeat 2 26 0 1525 233 118 29 chr4 13751011 13751052 -170537610 + MLT2B1 LTR ERVL 484 520 0 285 315 120 0 chr4 13751058 13751150 -170537512 - MIR SINE MIR -141 121 19 203 224 134 15 chr4 13751490 13751557 -170537105 + L3 LINE CR1 1243 1317 -260 295 357 49 38 chr4 13752303 13752488 -170536174 + MIR SINE MIR 20 206 -56 667 206 44 0 chr4 13752588 13752724 -170535938 - MLT1B LTR MaLR -10 380 239 300 174 14 14 chr4 13752824 13752893 -170535769 - MLT1B LTR MaLR -321 69 1 254 331 0 8 chr4 13753113 13753243 -170535419 + (TG)n Simple_repeat Simple_repeat 2 130 0 1683 162 39 72 chr4 13753475 13753863 -170534799 - THE1C LTR MaLR 0 375 1 9429 136 53 6 chr4 13753863 13755370 -170533292 - THE1C-int LTR MaLR 0 1580 3 1887 166 27 24 chr4 13755372 13755746 -170532916 - THE1C LTR MaLR 0 375 1 381 357 39 26 chr4 13755758 13755912 -170532750 + MER91A DNA MER1_type 1 156 -40 22 0 0 0 chr4 13757342 13757364 -170531298 + AT_rich Low_complexity Low_complexity 1 22 0 747 303 19 0 chr4 13757868 13758079 -170530583 + MER58A DNA MER1_type 10 224 0 278 335 120 11 chr4 13758079 13758270 -170530392 - MIR SINE MIR -46 216 5 597 163 59 20 chr4 13758285 13758438 -170530224 - L1MB8 LINE L1 -6 6241 6083 859 222 61 12 chr4 13758448 13758737 -170529925 - L1MB8 LINE L1 -656 5587 5287 7711 263 54 10 chr4 13758825 13759530 -170529132 - L1MB8 LINE L1 -1101 5114 4442 2309 116 38 30 chr4 13759530 13759902 -170528760 - THE1C LTR MaLR 0 375 1 7711 263 54 10 chr4 13759902 13760197 -170528465 - L1MB8 LINE L1 -1773 4442 4162 360 0 0 0 chr4 13760197 13760237 -170528425 + (TA)n Simple_repeat Simple_repeat 1 40 0 7711 263 54 10 chr4 13760237 13762155 -170526507 - L1MB8 LINE L1 -2053 4162 2102 5845 257 42 43 chr4 13762514 13764912 -170523750 - L1M4c LINE L1 -4436 2702 192 278 354 7 49 chr4 13765696 13765840 -170522822 + MIR3 SINE MIR 57 194 -14 1766 154 13 26 chr4 13765861 13766166 -170522496 + AluSx SINE Alu 2 302 -10 965 167 29 6 chr4 13767059 13767233 -170521429 + MLT1B LTR MaLR 1 178 -212 2096 131 0 13 chr4 13767235 13767547 -170521115 + AluSg SINE Alu 1 308 -2 213 39 0 0 chr4 13767637 13767663 -170520999 + (CA)n Simple_repeat Simple_repeat 2 27 0 301 247 22 22 chr4 13767719 13767808 -170520854 - L1MC4 LINE L1 -1339 6703 6615 316 342 89 20 chr4 13767847 13768049 -170520613 - L1MC4 LINE L1 -2072 5736 5521 197 132 26 0 chr4 13768561 13768599 -170520063 + (TA)n Simple_repeat Simple_repeat 2 40 0 2163 68 0 31 chr4 13769404 13769719 -170518943 - AluY SINE Alu 0 306 1 1551 180 41 0 chr4 13770134 13770429 -170518233 + L1MC1 LINE L1 5500 5806 -527 745 181 16 85 chr4 13770567 13770755 -170517907 + FAM SINE Alu 1 175 0 1994 148 21 0 chr4 13770755 13771087 -170517575 + L1PA16 LINE L1 5676 6014 -152 1621 176 49 43 chr4 13771087 13771456 -170517206 + THE1C LTR MaLR 1 371 -4 9270 129 19 42 chr4 13771462 13773077 -170515585 + THE1C-int LTR MaLR 3 1580 0 1624 177 65 19 chr4 13773077 13773477 -170515185 + THE1C LTR MaLR 1 428 0 749 158 36 0 chr4 13773481 13773620 -170515042 + L1PA16 LINE L1 6014 6157 -9 219 69 0 0 chr4 13773660 13773689 -170514973 + (TA)n Simple_repeat Simple_repeat 1 29 0 2588 187 12 8 chr4 13773699 13774213 -170514449 + L1MC1 LINE L1 5817 6332 -1 988 213 122 3 chr4 13775798 13776117 -170512545 - MER114 LTR ERV -96 552 196 253 261 152 11 chr4 13776198 13776290 -170512372 - MER114 LTR ERV -543 105 1 29 47 0 0 chr4 13776535 13776578 -170512084 + AT_rich Low_complexity Low_complexity 1 43 0 1964 129 21 0 chr4 13776606 13776892 -170511770 + AluSx SINE Alu 1 292 -20 186 319 43 53 chr4 13777211 13777305 -170511357 + MER5A DNA MER1_type 29 121 -68 240 35 0 0 chr4 13778905 13778934 -170509728 + (T)n Simple_repeat Simple_repeat 1 29 0 794 268 6 0 chr4 13780089 13780272 -170508390 - MER58A DNA MER1_type 0 224 41 195 377 41 0 chr4 13780473 13780595 -170508067 + MIR SINE MIR 61 187 -75 690 291 46 12 chr4 13780971 13781212 -170507450 - MIR SINE MIR 0 262 14 258 302 85 9 chr4 13781379 13781485 -170507177 + MIR SINE MIR 54 167 -95 207 133 0 0 chr4 13781649 13781694 -170506968 + (CAAAAA)n Simple_repeat Simple_repeat 2 46 0 1770 106 0 4 chr4 13782210 13782464 -170506198 - L1PA12 LINE L1 -15 6153 5901 211 285 39 69 chr4 13782763 13782893 -170505769 + L2 LINE L2 3188 3313 0 292 252 176 17 chr4 13783106 13783225 -170505437 + MIR SINE MIR 39 176 -86 247 296 37 0 chr4 13783669 13783750 -170504912 + MIR3 SINE MIR 116 199 -9 299 224 0 10 chr4 13785404 13785502 -170503160 + GA-rich Low_complexity Low_complexity 2 98 0 47 73 0 0 chr4 13785677 13785773 -170502889 + AT_rich Low_complexity Low_complexity 1 96 0 236 301 62 106 chr4 13785791 13786017 -170502645 - MIR SINE MIR -27 235 20 4131 151 89 7 chr4 13786188 13786949 -170501713 - LTR1B LTR ERV1 0 826 3 1859 158 58 0 chr4 13788650 13788992 -170499670 - THE1B LTR MaLR -2 362 1 5532 113 1 5 chr4 13788992 13789765 -170498897 - THE1B-int LTR MaLR 0 1580 811 681 173 14 125 chr4 13789765 13789973 -170498689 + MER67B LTR ERV1 40 224 -437 499 289 25 1 chr4 13790114 13790344 -170498318 + MER67A LTR ERV1 273 543 0 452 284 61 6 chr4 13790391 13790554 -170498108 - MIR SINE MIR -62 146 16 234 0 0 0 chr4 13790816 13790842 -170497820 + (CA)n Simple_repeat Simple_repeat 2 27 0 214 288 0 0 chr4 13791218 13791277 -170497385 + T-rich Low_complexity Low_complexity 1 59 0 279 329 134 24 chr4 13791555 13791719 -170496943 + MIR3 SINE MIR 8 189 -19 200 226 0 16 chr4 13792928 13792990 -170495672 + (TAAA)n Simple_repeat Simple_repeat 3 63 0 337 257 176 65 chr4 13792996 13793145 -170495517 - L1MC4a LINE L1 -1900 5908 5777 1515 99 27 5 chr4 13793145 13793368 -170495294 + MER30 DNA MER1_type 3 230 0 337 257 176 65 chr4 13793368 13793479 -170495183 - L1MC4a LINE L1 -2031 5777 5619 31 58 0 0 chr4 13793733 13793785 -170494877 + AT_rich Low_complexity Low_complexity 1 52 0 482 0 17 0 chr4 13794664 13794722 -170493940 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 265 310 102 19 chr4 13794747 13795267 -170493395 - L1MC4a LINE L1 -1860 4286 3724 204 340 21 28 chr4 13795276 13795420 -170493242 + L2 LINE L2 3159 3301 -12 6503 32 6 0 chr4 13795726 13796502 -170492160 - L1PA4 LINE L1 0 6155 5375 3881 30 0 0 chr4 13796503 13796978 -170491684 + L1PA4 LINE L1 4880 5354 -792 2665 73 6 0 chr4 13797225 13797581 -170491081 - L1PA13 LINE L1 -3 6160 5803 2373 80 0 3 chr4 13797584 13797886 -170490776 - AluY SINE Alu -10 301 1 1051 205 63 57 chr4 13797886 13798203 -170490459 - MLT1A2 LTR MaLR -55 319 1 454 269 55 43 chr4 13798452 13798709 -170489953 - L1ME4a LINE L1 -238 5883 5624 192 77 0 0 chr4 13798811 13798837 -170489825 + (A)n Simple_repeat Simple_repeat 1 26 0 205 373 67 0 chr4 13799758 13799833 -170488829 - L2 LINE L2 -55 3217 3138 2107 117 0 0 chr4 13799983 13800299 -170488363 + AluSc SINE Alu 1 316 0 366 264 88 8 chr4 13800454 13800579 -170488083 + L2 LINE L2 3179 3313 0 220 285 99 63 chr4 13802503 13802715 -170485947 - L2 LINE L2 -11 3302 3080 1751 161 3 43 chr4 13802715 13803037 -170485625 - AluJb SINE Alu -3 309 1 214 297 44 22 chr4 13803046 13803137 -170485525 + L3 LINE CR1 804 896 -681 1921 193 28 96 chr4 13803140 13803758 -170484904 + L1MB7 LINE L1 5593 6168 -16 383 245 89 29 chr4 13803897 13804022 -170484640 - FLAM_A SINE Alu -2 131 13 380 315 31 8 chr4 13804703 13804833 -170483829 + MER94 DNA DNA 2 134 0 386 276 23 0 chr4 13804909 13804996 -170483666 + L2 LINE L2 2968 3056 -257 205 318 182 0 chr4 13805048 13805158 -170483504 + L2 LINE L2 3183 3312 -1 1948 187 6 0 chr4 13805370 13805701 -170482961 + MER7A DNA MER2_type 4 334 -12 204 40 0 0 chr4 13806041 13806066 -170482596 + (A)n Simple_repeat Simple_repeat 1 25 0 2105 113 0 7 chr4 13806071 13806364 -170482298 + AluSc SINE Alu 1 291 -18 21 0 0 0 chr4 13806379 13806400 -170482262 + AT_rich Low_complexity Low_complexity 1 21 0 212 77 26 0 chr4 13807430 13807469 -170481193 + (TG)n Simple_repeat Simple_repeat 1 40 0 2131 145 97 8 chr4 13807665 13808058 -170480604 - MSTA LTR MaLR 0 428 1 201 176 0 0 chr4 13809441 13809475 -170479187 + A-rich Low_complexity Low_complexity 1 34 0 377 289 43 75 chr4 13809752 13809939 -170478723 - MIR3 SINE MIR -7 201 21 251 348 130 29 chr4 13810000 13810522 -170478140 - L2 LINE L2 -23 3290 2710 3673 180 36 34 chr4 13810751 13811613 -170477049 - L1MC2 LINE L1 -108 6236 5373 379 364 54 29 chr4 13811688 13811968 -170476694 - L2 LINE L2 0 3272 2986 31 26 0 0 chr4 13812268 13812306 -170476356 + AT_rich Low_complexity Low_complexity 1 38 0 22 56 0 0 chr4 13812367 13812403 -170476259 + AT_rich Low_complexity Low_complexity 1 36 0 339 289 60 48 chr4 13812488 13812737 -170475925 - L1ME4a LINE L1 -295 5826 5575 454 332 108 31 chr4 13812908 13813569 -170475093 + L2 LINE L2 2595 3313 0 497 304 93 78 chr4 13813612 13814585 -170474077 - L1ME4a LINE L1 -755 5391 4404 2522 78 28 8 chr4 13814670 13815028 -170473634 + L1PA8A LINE L1 5762 6126 -5 23 33 0 0 chr4 13815028 13815058 -170473604 + AT_rich Low_complexity Low_complexity 1 30 0 1371 236 85 23 chr4 13818175 13818574 -170470088 - MLT2B1 LTR ERVL -90 430 7 1244 291 103 10 chr4 13818578 13819084 -170469578 + MLT1E2 LTR MaLR 71 623 -3 1693 212 132 42 chr4 13819335 13819777 -170468885 + MLT2B1 LTR ERVL 1 490 -30 441 0 0 0 chr4 13819777 13819826 -170468836 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 1693 212 132 42 chr4 13819826 13819860 -170468802 + MLT2B1 LTR ERVL 490 520 0 22 0 0 0 chr4 13820261 13820283 -170468379 + AT_rich Low_complexity Low_complexity 1 22 0 387 127 0 0 chr4 13820334 13820397 -170468265 + (GGGA)n Simple_repeat Simple_repeat 1 63 0 2577 186 35 2 chr4 13820481 13821031 -170467631 + L1MA4 LINE L1 4706 5273 -873 801 184 29 0 chr4 13821380 13821516 -170467146 + FRAM SINE Alu 1 131 -45 5208 149 10 16 chr4 13821518 13822494 -170466168 + L1MA4 LINE L1 5317 6286 -14 677 281 74 157 chr4 13822626 13823981 -170464681 - L2 LINE L2 -643 2671 1429 1145 201 38 112 chr4 13824538 13824932 -170463730 - MLT1A1 LTR MaLR 0 365 1 854 291 156 44 chr4 13825155 13825988 -170462674 + L2 LINE L2 2339 3313 0 317 332 147 22 chr4 13826842 13827162 -170461500 + L2 LINE L2 2702 3062 -251 217 345 69 28 chr4 13827340 13827485 -170461177 + L2 LINE L2 3162 3312 -1 340 336 25 17 chr4 13827486 13827605 -170461057 - MIR SINE MIR -131 131 12 642 200 97 0 chr4 13828050 13828205 -170460457 + L1MC1 LINE L1 6155 6324 -9 1947 90 4 8 chr4 13828206 13828462 -170460200 + AluY SINE Alu 44 298 -13 2340 60 0 0 chr4 13829718 13830029 -170458633 + AluY SINE Alu 1 311 0 23 0 0 0 chr4 13830568 13830591 -170458071 + AT_rich Low_complexity Low_complexity 1 23 0 39659 40 36 5 chr4 13830779 13836019 -170452643 + L1P LINE L1 2 5403 -743 14611 107 15 17 chr4 13836129 13839065 -170449597 - HERVH LTR ERV1 -4726 2987 1 3054 89 4 30 chr4 13839067 13839527 -170449135 - LTR7 LTR ERV1 -2 448 1 219 298 46 17 chr4 13840312 13840438 -170448224 - MIR SINE MIR -63 145 53 346 246 59 68 chr4 13840651 13840769 -170447893 - MIR SINE MIR -60 202 86 941 198 77 30 chr4 13840894 13841192 -170447470 - L1MC3 LINE L1 -3 7782 7471 1107 189 15 0 chr4 13841193 13841399 -170447263 - L1MC3 LINE L1 -498 7287 7079 481 158 17 0 chr4 13841579 13841699 -170446963 + (TA)n Simple_repeat Simple_repeat 1 122 0 841 167 40 7 chr4 13841717 13841867 -170446795 - MSTB LTR MaLR -58 368 214 2774 267 49 19 chr4 13841874 13843044 -170445618 - L1M4 LINE L1 -1822 4324 3120 198 352 42 0 chr4 13843359 13843430 -170445232 + L2 LINE L2 3234 3307 -6 2093 142 20 6 chr4 13844283 13844629 -170444033 + THE1B LTR MaLR 1 351 -13 231 394 36 16 chr4 13845022 13845215 -170443447 - L2 LINE L2 -182 3090 2894 191 333 0 0 chr4 13845329 13845380 -170443282 + L2 LINE L2 3218 3268 -4 24 0 0 0 chr4 13845680 13845704 -170442958 + AT_rich Low_complexity Low_complexity 1 24 0 1205 218 132 32 chr4 13846003 13846543 -170442119 + MER67B LTR ERV1 43 511 -3 3148 49 0 0 chr4 13846563 13846949 -170441713 - L1PA3 LINE L1 0 6155 5770 2144 38 4 0 chr4 13847012 13847275 -170441387 - L1PA2 LINE L1 0 6155 5892 313 295 25 16 chr4 13847727 13847849 -170440813 - MIR SINE MIR -71 191 69 934 235 124 82 chr4 13847921 13848293 -170440369 + MLT1F1 LTR MaLR 3 409 -158 1677 138 32 21 chr4 13848293 13848628 -170440034 - AluSx SINE Alu 0 338 1 934 235 124 82 chr4 13848628 13848794 -170439868 + MLT1F1 LTR MaLR 409 567 0 858 203 39 0 chr4 13850149 13850356 -170438306 - L1MA6 LINE L1 -19 6281 6067 2089 192 17 19 chr4 13850357 13850825 -170437837 - L1MB5 LINE L1 -50 6124 5658 995 88 15 0 chr4 13850847 13850984 -170437678 - AluSc SINE Alu -6 303 165 21 0 0 0 chr4 13852680 13852701 -170435961 + AT_rich Low_complexity Low_complexity 1 21 0 2037 104 5 5 chr4 13853451 13853810 -170434852 - LTR7 LTR ERV1 -2 448 1 2262 90 48 13 chr4 13853810 13854187 -170434475 - HERVH LTR ERV1 0 7713 7324 1243 138 18 9 chr4 13854187 13854405 -170434257 - HERVH LTR ERV1 -1894 5819 5600 4067 151 0 1 chr4 13854406 13855069 -170433593 - HERVH LTR ERV1 -2564 5149 4488 3053 137 0 6 chr4 13855071 13855576 -170433086 - HERVH LTR ERV1 -3720 3993 3492 521 161 21 0 chr4 13855566 13855659 -170433003 - HERVH LTR ERV1 -4423 3290 3196 * 1669 184 39 91 chr4 13855859 13856298 -170432364 + MSTB1 LTR MaLR 17 432 0 21 0 0 0 chr4 13857050 13857071 -170431591 + AT_rich Low_complexity Low_complexity 1 21 0 615 295 63 0 chr4 13857557 13857747 -170430915 + MER63A DNA MER1_type 9 210 0 285 257 0 37 chr4 13857947 13858056 -170430606 + (TA)n Simple_repeat Simple_repeat 1 105 0 297 253 69 0 chr4 13858080 13858167 -170430495 + L1ME1 LINE L1 6069 6161 -5 240 184 0 0 chr4 13858886 13858935 -170429727 + (TA)n Simple_repeat Simple_repeat 1 49 0 547 297 40 52 chr4 13859185 13859532 -170429130 - MARNA DNA Mariner -101 485 143 30 0 0 0 chr4 13859956 13859986 -170428676 + AT_rich Low_complexity Low_complexity 1 30 0 2105 82 32 4 chr4 13861067 13861346 -170427316 - AluY SINE Alu -24 287 1 1911 134 7 10 chr4 13862319 13862626 -170426036 - AluSq SINE Alu -7 306 1 336 279 0 0 chr4 13863305 13863391 -170425271 + MER33 DNA MER1_type 1 86 -238 513 201 107 60 chr4 13863434 13863668 -170424994 + MER33 DNA MER1_type 118 362 -1 265 354 0 12 chr4 13863878 13863960 -170424702 - L2 LINE L2 -1 3271 3191 1379 170 11 26 chr4 13865214 13865239 -170423423 - L1PA10 LINE L1 -307 5861 5837 2552 151 7 0 chr4 13865239 13865671 -170422991 - L1PA13 LINE L1 0 6163 5729 1379 170 11 26 chr4 13865671 13865916 -170422746 - L1PA10 LINE L1 -331 5837 5595 1295 132 5 0 chr4 13866017 13866206 -170422456 - AluYb8 SINE Alu -128 190 1 1968 184 49 3 chr4 13867099 13867464 -170421198 + MLT1B LTR MaLR 9 390 0 2146 83 0 10 chr4 13868172 13868461 -170420201 + AluY SINE Alu 1 286 -25 706 271 17 64 chr4 13868764 13868852 -170419810 - MIR SINE MIR -34 228 137 1916 124 0 79 chr4 13868852 13869167 -170419495 + AluSx SINE Alu 7 296 -16 706 271 17 64 chr4 13869167 13869314 -170419348 - MIR SINE MIR -125 137 4 307 317 16 16 chr4 13869905 13870028 -170418634 + MIR SINE MIR 140 262 0 201 74 0 0 chr4 13870911 13870938 -170417724 + (T)n Simple_repeat Simple_repeat 1 27 0 1933 147 68 8 chr4 13871537 13871890 -170416772 - THE1C LTR MaLR -1 374 1 270 0 0 0 chr4 13874020 13874050 -170414612 + (TG)n Simple_repeat Simple_repeat 1 30 0 690 272 31 26 chr4 13874654 13874882 -170413780 + MIR SINE MIR 30 258 -4 3253 163 0 11 chr4 13874979 13875512 -170413150 + MER1A DNA MER1_type 1 527 0 23 0 0 0 chr4 13876435 13876458 -170412204 + AT_rich Low_complexity Low_complexity 1 23 0 1920 162 21 29 chr4 13877010 13877350 -170411312 - MER1B DNA MER1_type 0 337 1 199 283 0 0 chr4 13878417 13878463 -170410199 - MIR SINE MIR -124 138 93 27 0 0 0 chr4 13879358 13879385 -170409277 + AT_rich Low_complexity Low_complexity 1 27 0 210 71 0 0 chr4 13880029 13880057 -170408605 + (T)n Simple_repeat Simple_repeat 1 28 0 1148 252 22 31 chr4 13880202 13880523 -170408139 + MLT1C LTR MaLR 1 318 -149 1684 226 32 25 chr4 13880523 13880997 -170407665 + L1MA9 LINE L1 5799 6275 -37 214 151 38 38 chr4 13882237 13882290 -170406372 + T-rich Low_complexity Low_complexity 3 55 0 21 0 0 0 chr4 13882330 13882351 -170406311 + AT_rich Low_complexity Low_complexity 1 21 0 3621 207 43 34 chr4 13882401 13883886 -170404776 + L1MA10 LINE L1 4819 6321 -13 270 179 0 0 chr4 13883895 13883951 -170404711 + GA-rich Low_complexity Low_complexity 3 58 0 218 176 20 0 chr4 13884580 13884631 -170404031 + (TA)n Simple_repeat Simple_repeat 2 53 0 857 271 56 68 chr4 13885280 13885675 -170402987 + L2 LINE L2 2916 3305 -8 186 282 89 32 chr4 13885677 13885801 -170402861 - MIR SINE MIR -58 204 74 201 391 109 8 chr4 13885873 13886121 -170402541 + L3 LINE CR1 1277 1549 -28 229 303 70 51 chr4 13886369 13886509 -170402153 - MIR SINE MIR -65 143 5 303 262 82 31 chr4 13887119 13887266 -170401396 - MIR SINE MIR -53 209 54 994 268 51 49 chr4 13890436 13890924 -170397738 - MLT1E3 LTR MaLR 0 624 136 315 334 46 59 chr4 13890925 13891248 -170397414 - L1M4 LINE L1 -1932 4214 3896 319 247 165 99 chr4 13891564 13891688 -170396974 - L1M4 LINE L1 -2688 3458 3344 476 0 0 0 chr4 13891688 13891745 -170396917 - L1PA3 LINE L1 -3 6152 6096 319 247 165 99 chr4 13891745 13891794 -170396868 - L1M4 LINE L1 -2802 3344 3300 2285 80 0 7 chr4 13891794 13892080 -170396582 - AluY SINE Alu -9 302 19 319 247 165 99 chr4 13892080 13892257 -170396405 - L1M4 LINE L1 -2846 3300 3084 312 188 0 0 chr4 13892334 13892398 -170396264 + CT-rich Low_complexity Low_complexity 3 66 0 341 317 16 8 chr4 13892457 13892580 -170396082 - L1M4 LINE L1 -3161 2985 2862 215 260 13 26 chr4 13892730 13892759 -170395903 + CT-rich Low_complexity Low_complexity 1 29 -47 2429 160 7 47 chr4 13892759 13893203 -170395459 - MSTB LTR MaLR 0 426 1 215 260 13 26 chr4 13893203 13893250 -170395412 + CT-rich Low_complexity Low_complexity 29 76 0 1918 340 52 11 chr4 13893408 13894156 -170394506 + L1MA7 LINE L1 1430 2208 -5288 2011 258 84 26 chr4 13894174 13894513 -170394149 + L1MA7 LINE L1 2260 2578 -4987 1998 175 0 0 chr4 13894513 13894821 -170393841 + AluSx SINE Alu 1 308 -4 2011 258 84 26 chr4 13894821 13896196 -170392466 + L1MA7 LINE L1 2578 3732 -3833 * 3842 196 41 13 chr4 13896181 13897526 -170391136 + L1MA7 LINE L1 6199 7699 -11 27 96 0 0 chr4 13897603 13897686 -170390976 + AT_rich Low_complexity Low_complexity 1 83 0 382 382 36 5 chr4 13897737 13897957 -170390705 + MIR SINE MIR 15 241 -21 250 362 5 55 chr4 13898050 13898249 -170390413 - MIR SINE MIR -71 191 3 258 32 0 0 chr4 13898643 13898674 -170389988 + (CA)n Simple_repeat Simple_repeat 2 32 0 728 283 15 20 chr4 13899061 13899259 -170389403 + MER58A DNA MER1_type 9 205 -19 197 333 0 0 chr4 13899278 13899332 -170389330 - MIR SINE MIR -74 134 81 215 237 118 59 chr4 13900082 13900217 -170388445 + MIR SINE MIR 64 206 -56 324 70 0 0 chr4 13900271 13900314 -170388348 + (ATG)n Simple_repeat Simple_repeat 1 43 0 272 269 26 0 chr4 13900352 13900430 -170388232 + MER94 DNA DNA 39 118 -16 1606 35 0 20 chr4 13900730 13900930 -170387732 - AluY SINE Alu -12 299 104 312 244 0 0 chr4 13901252 13901342 -170387320 + GA-rich Low_complexity Low_complexity 5 94 0 180 0 0 0 chr4 13902119 13902139 -170386523 + (T)n Simple_repeat Simple_repeat 1 20 0 183 288 195 34 chr4 13902440 13902558 -170386104 + MIR SINE MIR 20 156 -106 186 103 0 0 chr4 13903701 13903730 -170384932 + (TA)n Simple_repeat Simple_repeat 2 30 0 377 243 5 146 chr4 13904899 13905084 -170383578 + LTR67 LTR ERVL 353 511 -46 1534 199 11 72 chr4 13905097 13905474 -170383188 + MLT1A1 LTR MaLR 1 354 -11 334 240 104 32 chr4 13905629 13905783 -170382879 - L2 LINE L2 -6 3307 3143 714 275 51 18 chr4 13906017 13906351 -170382311 - L1M4 LINE L1 -2216 3930 3586 847 104 0 0 chr4 13906604 13906729 -170381933 + AluY SINE Alu 187 311 0 1727 194 41 19 chr4 13907077 13907444 -170381218 - THE1C LTR MaLR 0 375 1 9211 145 12 35 chr4 13907444 13909057 -170379605 - THE1C-int LTR MaLR 0 1580 4 1714 182 40 37 chr4 13909060 13909434 -170379228 - THE1C LTR MaLR 0 375 1 323 327 67 0 chr4 13909587 13909691 -170378971 - MER81 DNA DNA -3 111 1 1321 158 36 9 chr4 13909713 13909935 -170378727 - MER30 DNA MER1_type 0 230 3 183 80 0 0 chr4 13910406 13910431 -170378231 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 228 287 57 100 chr4 13910447 13910685 -170377977 + MIR SINE MIR 9 236 -26 21 0 0 0 chr4 13911002 13911023 -170377639 + AT_rich Low_complexity Low_complexity 1 21 0 1497 204 22 44 chr4 13911367 13911729 -170376933 + MLT1A1 LTR MaLR 12 365 0 303 318 13 54 chr4 13911823 13911976 -170376686 + MIR SINE MIR 47 146 -62 397 234 39 55 chr4 13912136 13912264 -170376398 + MIR SINE MIR 31 156 -106 252 342 0 8 chr4 13912296 13912413 -170376249 + MIR SINE MIR 146 261 -1 23 0 0 0 chr4 13912470 13912493 -170376169 + AT_rich Low_complexity Low_complexity 1 23 0 210 250 0 0 chr4 13912595 13912699 -170375963 + (CA)n Simple_repeat Simple_repeat 1 104 0 202 305 17 17 chr4 13912882 13912941 -170375721 + MIR SINE MIR 95 153 -55 * 214 214 0 0 chr4 13912936 13912978 -170375684 + L2 LINE L2 3267 3308 -5 274 320 72 24 chr4 13913240 13913365 -170375297 - L2 LINE L2 0 3272 3142 225 184 0 0 chr4 13913629 13913667 -170374995 - MLT1I LTR MaLR -274 135 98 254 302 0 0 chr4 13913981 13914044 -170374618 + L2 LINE L2 3210 3272 0 287 292 138 23 chr4 13914165 13914295 -170374367 + L2 LINE L2 3118 3262 -10 426 342 53 25 chr4 13914508 13915087 -170373575 + L1ME2 LINE L1 5263 5867 -297 215 323 132 32 chr4 13915864 13916093 -170372569 + MIR3 SINE MIR 5 262 0 21 0 0 0 chr4 13917536 13917557 -170371105 + AT_rich Low_complexity Low_complexity 1 21 0 1783 162 0 4 chr4 13917563 13917862 -170370800 + AluSx SINE Alu 14 311 0 990 249 69 69 chr4 13917956 13918346 -170370316 + MLT1B LTR MaLR 1 390 0 2260 240 47 39 chr4 13918347 13919113 -170369549 - L1ME2 LINE L1 -22 6142 5371 808 290 116 28 chr4 13919129 13919973 -170368689 - L1ME2 LINE L1 -845 5301 4384 2198 273 89 34 chr4 13920096 13921398 -170367264 - L1ME2 LINE L1 -2098 4048 2675 33 0 0 0 chr4 13921776 13921809 -170366853 + AT_rich Low_complexity Low_complexity 1 33 0 317 325 77 36 chr4 13922071 13922265 -170366397 - MIR SINE MIR 0 262 61 576 43 0 0 chr4 13922779 13922848 -170365814 - LTR12 LTR ERV1 0 714 646 337 231 11 0 chr4 13922851 13922942 -170365720 + LTR30 LTR ERV1 552 643 -79 679 122 9 9 chr4 13922944 13923059 -170365603 + LTR12 LTR ERV1 482 596 -118 211 351 46 30 chr4 13923178 13923309 -170365353 + MIR SINE MIR 16 148 -114 1177 258 185 6 chr4 13923804 13924291 -170364371 - MLT1F1 LTR MaLR 0 567 1 798 264 95 20 chr4 13924544 13924892 -170363770 - L1ME4a LINE L1 -15 6106 5733 599 200 32 0 chr4 13925380 13925505 -170363157 + MER94 DNA DNA 1 129 -5 289 185 41 14 chr4 13925753 13925899 -170362763 + (TA)n Simple_repeat Simple_repeat 2 151 0 659 355 47 17 chr4 13926309 13926608 -170362054 + L1MA6 LINE L1 395 702 -6147 3474 245 50 46 chr4 13926836 13928391 -170360271 + L1MA6 LINE L1 1345 2892 -3956 2866 10 0 0 chr4 13928391 13928701 -170359961 - AluY SINE Alu -1 310 1 3474 245 50 46 chr4 13928701 13928946 -170359716 + L1MA6 LINE L1 2892 3155 -3693 672 115 0 0 chr4 13928946 13929050 -170359612 + (TA)n Simple_repeat Simple_repeat 1 104 0 3474 245 50 46 chr4 13929050 13929088 -170359574 + L1MA6 LINE L1 3155 3191 -3657 3055 202 17 17 chr4 13929084 13930173 -170358489 + L1MA6 LINE L1 5287 6370 -632 * 2432 194 11 11 chr4 13930183 13930631 -170358031 + L1MA3 LINE L1 16 463 -7102 608 140 11 0 chr4 13930633 13930726 -170357936 - AluSg SINE Alu -216 94 1 806 154 12 12 chr4 13930726 13930888 -170357774 + L1MA3 LINE L1 5631 5792 -1773 3126 123 18 22 chr4 13930888 13931435 -170357227 + L1MA3 LINE L1 7175 7724 0 2374 192 42 32 chr4 13931442 13932040 -170356622 + L1MA6 LINE L1 6399 7002 0 523 327 145 21 chr4 13932343 13932777 -170355885 - L3 LINE CR1 -824 753 266 26 0 0 0 chr4 13932875 13932901 -170355761 + AT_rich Low_complexity Low_complexity 1 26 0 2223 102 0 13 chr4 13933366 13933679 -170354983 - AluSc SINE Alu 0 309 1 188 377 44 50 chr4 13934801 13934960 -170353702 - MIR SINE MIR -80 182 25 1291 312 11 21 chr4 13935471 13935907 -170352755 - LTR16A LTR ERVL 0 450 19 849 156 172 11 chr4 13936583 13936763 -170351899 + MER4B LTR ERV1 1 209 -401 2358 243 39 15 chr4 13936766 13937109 -170351553 + L1MC/D LINE L1 3791 4124 -2022 6240 93 14 11 chr4 13937109 13938888 -170349774 + L1PA8 LINE L1 4359 6172 0 2358 243 39 15 chr4 13938888 13939348 -170349314 + L1MC/D LINE L1 4124 4613 -1533 246 235 12 0 chr4 13939348 13939429 -170349233 + (TA)n Simple_repeat Simple_repeat 2 83 0 445 194 112 8 chr4 13939431 13939565 -170349097 + L1MC/D LINE L1 4626 4773 -1373 2203 121 0 0 chr4 13939566 13939873 -170348789 + AluSx SINE Alu 3 309 -3 1069 253 54 0 chr4 13939893 13940190 -170348472 - MER58B DNA MER1_type -1 340 28 589 240 43 43 chr4 13940232 13940338 -170348324 + L1MC/D LINE L1 4827 4932 -1214 1583 115 0 0 chr4 13940338 13940556 -170348106 + AluSg/x SINE Alu 85 302 -8 589 240 43 43 chr4 13940556 13940703 -170347959 + L1MC/D LINE L1 4931 5080 -1066 335 180 104 17 chr4 13940737 13940826 -170347836 + L1MC/D LINE L1 5468 5561 -681 1393 266 96 29 chr4 13940834 13941427 -170347235 + L1ME1 LINE L1 5505 6137 -29 1046 314 109 14 chr4 13941493 13942054 -170346608 - L2 LINE L2 -1148 2166 1553 361 359 31 8 chr4 13943003 13943131 -170345531 - MIR SINE MIR -62 146 16 262 325 94 0 chr4 13943447 13943564 -170345098 + MIR SINE MIR 57 184 -78 213 231 0 0 chr4 13943637 13943676 -170344986 + (CATATA)n Simple_repeat Simple_repeat 1 39 0 192 179 0 0 chr4 13943850 13943889 -170344773 + (CA)n Simple_repeat Simple_repeat 1 39 0 2465 186 9 17 chr4 13944721 13945188 -170343474 + MLT1C LTR MaLR 1 463 -4 246 357 10 10 chr4 13945256 13945354 -170343308 + MIR SINE MIR 8 105 -157 242 355 116 6 chr4 13945381 13945553 -170343109 + MIR SINE MIR 10 200 -62 207 100 0 0 chr4 13945935 13945965 -170342697 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 249 273 110 65 chr4 13946206 13946360 -170342302 - MIR SINE MIR -54 208 48 254 284 125 51 chr4 13946671 13946847 -170341815 + MIR SINE MIR 59 247 -15 216 0 0 0 chr4 13947710 13947734 -170340928 + (TG)n Simple_repeat Simple_repeat 2 25 0 344 366 43 26 chr4 13948102 13948334 -170340328 + L2 LINE L2 2617 2852 -462 387 0 0 0 chr4 13948961 13949004 -170339658 + (GA)n Simple_repeat Simple_repeat 2 44 0 232 306 125 44 chr4 13949416 13949664 -170338998 - L2 LINE L2 -1 3312 3045 261 287 72 20 chr4 13949960 13950067 -170338595 - MIR SINE MIR -63 145 54 912 255 0 0 chr4 13950067 13950267 -170338395 + MER58A DNA MER1_type 1 200 -24 23 33 0 0 chr4 13950511 13950541 -170338121 + AT_rich Low_complexity Low_complexity 1 30 0 822 40 0 0 chr4 13950663 13950762 -170337900 - L1P LINE L1 -1275 4871 4773 6791 14 18 0 chr4 13950762 13951545 -170337117 + L1PA2 LINE L1 5355 6151 -4 692 310 147 31 chr4 13951800 13952277 -170336385 - MLT1G1 LTR MaLR -3 592 61 257 292 12 0 chr4 13953452 13953551 -170335111 - MLT-int LTR MaLR -1229 142 43 719 276 109 23 chr4 13953673 13953938 -170334724 - MLT1G3 LTR MaLR -217 313 26 1080 334 55 27 chr4 13954103 13954737 -170333925 + MLT2F LTR ERVL 8 659 -4 21 0 0 0 chr4 13954757 13954778 -170333884 + AT_rich Low_complexity Low_complexity 1 21 0 313 315 77 8 chr4 13955386 13955516 -170333146 + MIR SINE MIR 47 185 -77 27 62 0 0 chr4 13955533 13955581 -170333081 + AT_rich Low_complexity Low_complexity 1 48 0 420 292 58 43 chr4 13956544 13956702 -170331960 + MIR3 SINE MIR 33 193 -15 4573 199 52 21 chr4 13957780 13959167 -170329495 - L1MC2 LINE L1 -13 6331 4912 1155 189 0 14 chr4 13959168 13959385 -170329277 - AluJo SINE Alu -4 308 95 231 326 31 20 chr4 13959752 13959850 -170328812 - L2 LINE L2 0 3313 3215 2453 109 8 16 chr4 13960289 13960656 -170328006 + THE1B LTR MaLR 1 364 0 259 330 35 17 chr4 13960864 13960979 -170327683 - MIR SINE MIR -138 124 8 749 264 52 62 chr4 13961202 13961509 -170327153 + LTR16C LTR ERVL 180 483 -8 203 300 78 11 chr4 13962590 13962680 -170325982 + MIR SINE MIR 100 195 -67 224 232 0 0 chr4 13963720 13963776 -170324886 + A-rich Low_complexity Low_complexity 1 56 0 225 0 0 0 chr4 13963885 13963910 -170324752 + (A)n Simple_repeat Simple_repeat 1 25 0 218 295 13 0 chr4 13964135 13964213 -170324449 + (TA)n Simple_repeat Simple_repeat 2 80 0 520 288 130 45 chr4 13965985 13966454 -170322208 + MLT1H LTR MaLR 13 521 -28 312 311 57 83 chr4 13967521 13967871 -170320791 + L1MEd LINE L1 54 394 -5725 325 262 86 0 chr4 13968142 13968258 -170320404 + L1ME LINE L1 5269 5395 -751 770 163 7 22 chr4 13968351 13968486 -170320176 + AluJ SINE Alu 1 133 -169 2489 113 51 0 chr4 13968486 13969103 -170319559 - L1PA8 LINE L1 -534 5597 4953 3842 97 5 7 chr4 13969103 13969657 -170319005 + L1PA8 LINE L1 5610 6165 -7 785 229 18 0 chr4 13969657 13969823 -170318839 + AluJ SINE Alu 135 303 -9 359 313 26 14 chr4 13969823 13970064 -170318598 + L1ME LINE L1 5443 5700 -470 1681 313 75 30 chr4 13970634 13971646 -170317016 + L2 LINE L2 2131 3205 -108 661 287 89 13 chr4 13971642 13971879 -170316783 - MIR SINE MIR -6 256 2 * 329 289 11 0 chr4 13971914 13972004 -170316658 + L2 LINE L2 3221 3311 -2 440 271 16 94 chr4 13972077 13972269 -170316393 + MIR SINE MIR 82 258 -4 1717 130 72 44 chr4 13972660 13973021 -170315641 + THE1C LTR MaLR 3 373 -2 242 243 95 0 chr4 13973332 13973406 -170315256 - MIR SINE MIR -79 183 103 181 287 183 37 chr4 13973455 13973619 -170315043 + MIR SINE MIR 25 212 -50 276 319 72 25 chr4 13974252 13974528 -170314134 - L1ME LINE L1 -320 5801 5513 1345 181 0 41 chr4 13975875 13976145 -170312517 - Tigger3(Golem) DNA MER2_type -1 3028 2770 1865 167 0 10 chr4 13976219 13976512 -170312150 + AluSx SINE Alu 1 290 -22 351 0 0 0 chr4 13976512 13976551 -170312111 + (CA)n Simple_repeat Simple_repeat 2 40 0 537 214 0 15 chr4 13976551 13976673 -170311989 + L1 LINE L1 3571 3695 -2451 248 159 32 0 chr4 13976687 13976750 -170311912 + L1 LINE L1 3673 3737 -2409 1488 136 0 14 chr4 13976758 13976971 -170311691 + AluSg/x SINE Alu 84 293 -17 2348 191 11 2 chr4 13976976 13977446 -170311216 + L1MA6 LINE L1 5827 6300 0 2347 131 38 8 chr4 13977446 13977918 -170310744 - Tigger3(Golem) DNA MER2_type -258 2771 2286 2311 79 24 0 chr4 13978205 13978497 -170310165 - AluY SINE Alu -12 299 1 612 167 0 0 chr4 13978843 13978945 -170309717 + AluSc SINE Alu 199 300 -9 2094 120 10 0 chr4 13979413 13979712 -170308950 - AluSg SINE Alu -8 302 1 22 0 0 0 chr4 13979717 13979739 -170308923 + AT_rich Low_complexity Low_complexity 1 22 0 232 359 23 23 chr4 13979981 13980109 -170308553 + MIR SINE MIR 12 139 -123 839 313 52 45 chr4 13980333 13981041 -170307621 + L2 LINE L2 2584 3299 -14 244 274 0 32 chr4 13981417 13981479 -170307183 + L2 LINE L2 3196 3255 -17 1502 91 55 0 chr4 13982003 13982222 -170306440 - L1PA11 LINE L1 -4 6170 5940 21 36 0 0 chr4 13983493 13983521 -170305141 + AT_rich Low_complexity Low_complexity 1 28 0 2119 126 0 0 chr4 13983597 13983883 -170304779 - AluSc SINE Alu -23 286 1 2780 10 0 0 chr4 13984349 13984651 -170304011 - AluYa5 SINE Alu -9 302 1 189 330 96 0 chr4 13985126 13985220 -170303442 + MIR SINE MIR 16 118 -90 220 301 0 32 chr4 13985326 13985419 -170303243 - MIR SINE MIR -44 218 129 2252 100 3 22 chr4 13985472 13985783 -170302879 + AluY SINE Alu 1 305 -6 514 291 42 0 chr4 13985864 13986029 -170302633 + MER5B DNA MER1_type 3 174 -4 310 222 78 132 chr4 13986914 13987081 -170301581 - MIR SINE MIR -82 180 23 2516 81 136 5 chr4 13987279 13987675 -170300987 + LTR7 LTR ERV1 1 448 -2 14450 101 26 21 chr4 13987677 13990475 -170298187 + HERVH LTR ERV1 1 2995 -4718 5964 77 3 5 chr4 13990454 13991309 -170297353 + HERVH LTR ERV1 3140 3993 -3720 * 4114 145 0 1 chr4 13991311 13991974 -170296688 + HERVH LTR ERV1 4488 5149 -2564 1249 140 28 0 chr4 13991975 13992189 -170296473 + HERVH LTR ERV1 5600 5819 -1894 2248 93 48 13 chr4 13992189 13992566 -170296096 + HERVH LTR ERV1 7324 7713 0 2531 85 128 5 chr4 13992566 13992965 -170295697 + LTR7 LTR ERV1 1 448 -2 238 171 32 32 chr4 13994051 13994174 -170294488 + (TA)n Simple_repeat Simple_repeat 2 124 0 45 0 0 0 chr4 13994236 13994281 -170294381 + AT_rich Low_complexity Low_complexity 1 45 0 249 202 39 51 chr4 13994286 13994464 -170294198 + (TATAG)n Simple_repeat Simple_repeat 2 177 0 * 302 176 27 85 chr4 13994422 13994610 -170294052 + (TATAA)n Simple_repeat Simple_repeat 2 178 0 * 354 197 33 55 chr4 13994546 13994729 -170293933 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 * 400 209 40 23 chr4 13994669 13994900 -170293762 + (TA)n Simple_repeat Simple_repeat 1 234 0 501 16 0 0 chr4 13996136 13996200 -170292462 + L1PA3 LINE L1 6089 6152 -3 437 237 0 11 chr4 13996495 13996588 -170292074 - MER5A DNA MER1_type -84 105 14 198 0 0 0 chr4 13996711 13996733 -170291929 + (T)n Simple_repeat Simple_repeat 1 22 0 2139 158 43 39 chr4 13997086 13997351 -170291311 - MLT1C LTR MaLR 0 467 198 2063 148 52 0 chr4 13997351 13997696 -170290966 + THE1B LTR MaLR 2 364 0 2139 158 43 39 chr4 13997696 13997893 -170290769 - MLT1C LTR MaLR -269 198 3 24 0 0 0 chr4 13998463 13998487 -170290175 + AT_rich Low_complexity Low_complexity 1 24 0 427 107 16 57 chr4 13999515 13999637 -170289025 + (TTC)n Simple_repeat Simple_repeat 2 118 0 534 288 86 38 chr4 14000621 14000913 -170287749 - L2 LINE L2 0 3313 3008 1658 202 5 63 chr4 14001214 14001624 -170287038 - MLT1B LTR MaLR -4 386 1 335 253 12 12 chr4 14002048 14002210 -170286452 + GA-rich Low_complexity Low_complexity 2 163 0 6702 75 5 2 chr4 14002301 14003975 -170284687 + L1PA7 LINE L1 4480 6150 -4 191 267 58 35 chr4 14004105 14004191 -170284471 - MIR3 SINE MIR -38 170 83 310 287 11 0 chr4 14005363 14005450 -170283212 - MIR SINE MIR -63 145 58 275 304 55 118 chr4 14005868 14006266 -170282396 + L2 LINE L2 2892 3264 -8 * 441 198 23 0 chr4 14006262 14006348 -170282314 + MIR SINE MIR 56 143 -119 3492 156 40 39 chr4 14006723 14007449 -170281213 + LTR8A LTR ERV1 1 727 0 240 313 50 0 chr4 14007510 14007609 -170281053 + MIR3 SINE MIR 98 201 -7 275 319 107 6 chr4 14008454 14008623 -170280039 - MIR SINE MIR -11 251 66 2166 137 82 20 chr4 14009109 14009512 -170279150 + MSTA LTR MaLR 1 428 0 225 262 131 0 chr4 14009512 14009596 -170279066 + MER63 DNA MER1_type 11 731 -331 641 297 6 28 chr4 14010161 14010343 -170278319 - MIR SINE MIR -37 225 48 474 272 37 31 chr4 14010433 14010595 -170278067 + MIR3 SINE MIR 19 181 -27 372 372 64 6 chr4 14010793 14011036 -170277626 - MIR SINE MIR -4 258 7 689 190 72 9 chr4 14011352 14011592 -170277070 + MLT1B LTR MaLR 83 380 -10 213 267 0 70 chr4 14011862 14011948 -170276714 - MIR SINE MIR -88 174 95 352 359 96 23 chr4 14012460 14012680 -170275982 + MIR SINE MIR 20 255 -7 1757 114 27 71 chr4 14013009 14013345 -170275317 - AluSg SINE Alu 0 323 1 188 362 53 20 chr4 14014198 14014350 -170274312 + MIR SINE MIR 79 235 -27 515 362 63 23 chr4 14014369 14014800 -170273862 + L3 LINE CR1 936 1383 -194 2628 286 86 55 chr4 14015098 14016208 -170272454 + L2 LINE L2 1570 2739 -574 2049 131 0 16 chr4 14016208 14016520 -170272142 + AluSx SINE Alu 1 307 -5 2628 286 86 55 chr4 14016520 14017068 -170271594 + L2 LINE L2 2739 3268 -45 741 275 94 26 chr4 14017098 14017407 -170271255 - LTR33 LTR ERVL -178 343 14 747 260 29 25 chr4 14018300 14018504 -170270158 + MIR SINE MIR 53 257 -5 1208 219 88 78 chr4 14018704 14018806 -170269856 + MLT1D LTR MaLR 3 102 -403 2708 94 3 0 chr4 14018806 14019169 -170269493 + THE1B LTR MaLR 1 364 0 1208 219 88 78 chr4 14019169 14019564 -170269098 + MLT1D LTR MaLR 102 505 0 329 191 0 109 chr4 14019819 14019929 -170268733 - MER53 DNA DNA -68 121 24 273 192 0 0 chr4 14019886 14019938 -170268724 + MER53 DNA DNA 134 185 -4 * 512 315 12 6 chr4 14019991 14020153 -170268509 + MER5B DNA MER1_type 1 163 -15 433 328 44 28 chr4 14020162 14020342 -170268320 - MER5A DNA MER1_type 0 189 7 223 316 13 13 chr4 14021547 14021626 -170267036 + MIR SINE MIR 15 93 -169 205 200 233 42 chr4 14022383 14022503 -170266159 + MIR SINE MIR 117 259 -3 216 407 15 0 chr4 14022880 14023015 -170265647 - L2 LINE L2 -17 3296 3160 2218 112 0 3 chr4 14023337 14023632 -170265030 + AluSc SINE Alu 1 294 -15 281 286 67 57 chr4 14023870 14023975 -170264687 - L2 LINE L2 -309 2963 2858 223 267 93 12 chr4 14024095 14024181 -170264481 + MIR SINE MIR 116 208 -54 1752 307 103 68 chr4 14024864 14025518 -170263144 - L2 LINE L2 -4 3309 2679 1891 195 13 23 chr4 14025518 14025908 -170262754 - MLT1B LTR MaLR -4 386 1 1752 307 103 68 chr4 14025908 14026366 -170262296 - L2 LINE L2 -634 2679 2238 1456 134 31 0 chr4 14026366 14026589 -170262073 - MER30 DNA MER1_type 0 230 1 1752 307 103 68 chr4 14026589 14027207 -170261455 - L2 LINE L2 -1075 2238 1513 494 136 0 12 chr4 14027376 14027457 -170261205 - AluSg/x SINE Alu -17 295 216 27 73 0 0 chr4 14028646 14028701 -170259961 + AT_rich Low_complexity Low_complexity 1 55 0 804 276 14 9 chr4 14028783 14029004 -170259658 + MER58A DNA MER1_type 2 223 -1 643 304 118 32 chr4 14029055 14029410 -170259252 - MLT1L LTR MaLR -4 611 195 1981 136 14 3 chr4 14029410 14029705 -170258957 - AluSx SINE Alu -14 298 1 643 304 118 32 chr4 14029705 14029875 -170258787 - MLT1L LTR MaLR -420 195 41 522 234 9 9 chr4 14029955 14030062 -170258600 + L2 LINE L2 3189 3295 -18 293 314 58 49 chr4 14030626 14030852 -170257810 - L2 LINE L2 -194 3078 2851 210 197 45 45 chr4 14031472 14031538 -170257124 + MIR3 SINE MIR 111 176 -32 226 313 0 0 chr4 14033100 14033164 -170255498 - MIR SINE MIR -133 129 66 348 257 48 119 chr4 14033663 14033787 -170254875 + MIR SINE MIR 20 125 -137 186 71 0 0 chr4 14033787 14033815 -170254847 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 348 257 48 119 chr4 14033815 14033900 -170254762 + MIR SINE MIR 125 214 -48 212 313 9 8 chr4 14034048 14034190 -170254472 + MIR3 SINE MIR 91 207 -1 2493 81 0 0 chr4 14034700 14035010 -170253652 + AluY SINE Alu 1 310 -1 361 299 160 18 chr4 14035251 14035532 -170253130 - MLT1J1 LTR MaLR -106 340 20 400 228 53 70 chr4 14035982 14036096 -170252566 + L2 LINE L2 3202 3313 0 1231 199 126 0 chr4 14036207 14036351 -170252311 - AluSx SINE Alu -6 296 172 207 0 0 0 chr4 14036351 14036374 -170252288 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 1231 199 126 0 chr4 14036374 14036490 -170252172 - AluSx SINE Alu -130 172 3 513 102 19 74 chr4 14036554 14036662 -170252000 + AluSg/x SINE Alu 208 309 0 221 167 19 37 chr4 14036668 14036697 -170251965 + GA-rich Low_complexity Low_complexity 1 30 -23 1934 147 0 20 chr4 14036697 14036990 -170251672 + AluSx SINE Alu 26 312 0 221 167 19 37 chr4 14036990 14037014 -170251648 + GA-rich Low_complexity Low_complexity 30 53 0 225 269 0 0 chr4 14037726 14037804 -170250858 + (TATG)n Simple_repeat Simple_repeat 1 78 0 198 327 0 0 chr4 14038186 14038238 -170250424 + MIR SINE MIR 93 144 -64 348 282 73 0 chr4 14038955 14039065 -170249597 - L2 LINE L2 -12 3301 3184 689 332 42 49 chr4 14039283 14039708 -170248954 + L2 LINE L2 2861 3282 -31 699 282 13 15 chr4 14039738 14040135 -170248527 + L1M4 LINE L1 2918 3313 -2833 1743 147 47 32 chr4 14040148 14040488 -170248174 + MER21B LTR ERV1 508 852 -11 335 331 45 19 chr4 14040654 14040808 -170247854 + MIR3 SINE MIR 3 160 -48 324 240 78 36 chr4 14040890 14041082 -170247580 - MER113 DNA MER1_type? -321 200 1 241 339 95 42 chr4 14041147 14041315 -170247347 - L2 LINE L2 0 3272 3096 206 288 34 51 chr4 14041339 14041457 -170247205 + L2 LINE L2 2626 2741 -573 771 209 40 60 chr4 14041462 14041663 -170246999 + MER58A DNA MER1_type 7 203 -21 249 108 0 0 chr4 14042915 14042952 -170245710 + (TG)n Simple_repeat Simple_repeat 2 38 0 246 297 0 0 chr4 14044048 14044112 -170244550 + (TATATG)n Simple_repeat Simple_repeat 2 65 0 1295 255 40 64 chr4 14044602 14045131 -170243531 + LTR40a LTR ERVL 1 516 -3 311 315 97 37 chr4 14045320 14045536 -170243126 + MIR SINE MIR 10 238 -24 254 215 254 31 chr4 14045699 14045829 -170242833 + MLT1L LTR MaLR 54 212 -403 198 0 0 0 chr4 14045913 14045935 -170242727 + (A)n Simple_repeat Simple_repeat 1 22 0 1283 235 29 63 chr4 14045940 14046314 -170242348 + MLT1C LTR MaLR 39 397 -70 225 0 0 0 chr4 14046314 14046339 -170242323 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 1283 235 29 63 chr4 14046339 14046406 -170242256 + MLT1C LTR MaLR 397 465 -2 252 97 0 97 chr4 14046700 14046762 -170241900 - LTR66 LTR ERVL -171 439 384 202 150 0 25 chr4 14046767 14046807 -170241855 + (TA)n Simple_repeat Simple_repeat 1 39 0 425 258 0 0 chr4 14047629 14047726 -170240936 - MER81 DNA DNA -13 101 5 192 290 0 93 chr4 14047932 14048039 -170240623 + MIR SINE MIR 96 192 -70 316 146 0 0 chr4 14049680 14049735 -170238927 + MADE1 DNA Mariner 1 55 -25 290 352 142 37 chr4 14049775 14050099 -170238563 - L2 LINE L2 -421 2893 2536 318 206 0 27 chr4 14050214 14050287 -170238375 - MER116 DNA Mariner -2 78 8 210 179 0 0 chr4 14050528 14050584 -170238078 + A-rich Low_complexity Low_complexity 1 56 0 701 181 44 54 chr4 14051355 14051508 -170237154 + L1MA8 LINE L1 6090 6242 -49 2192 100 3 55 chr4 14051508 14051837 -170236825 + AluSq SINE Alu 2 313 0 701 181 44 54 chr4 14051837 14051887 -170236775 + L1MA8 LINE L1 6242 6291 0 449 34 17 0 chr4 14052094 14052153 -170236509 + (TAAA)n Simple_repeat Simple_repeat 2 61 0 306 0 0 0 chr4 14053412 14053446 -170235216 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 182 331 88 11 chr4 14053695 14053876 -170234786 - L2 LINE L2 -374 2940 2746 249 83 0 0 chr4 14054406 14054442 -170234220 + (TG)n Simple_repeat Simple_repeat 2 37 0 234 390 8 0 chr4 14054539 14054657 -170234005 - L2 LINE L2 -671 2643 2525 367 369 8 8 chr4 14055442 14055564 -170233098 + MIR3 SINE MIR 63 184 -24 1916 286 78 19 chr4 14056314 14057141 -170231521 - L2 LINE L2 -239 3074 2201 2491 180 31 72 chr4 14057147 14057859 -170230803 + L1MA9 LINE L1 5592 6274 -38 439 260 165 57 chr4 14057877 14058435 -170230227 - L2 LINE L2 -1106 2208 1591 2105 116 45 0 chr4 14059250 14059542 -170229120 - AluSg SINE Alu -5 305 1 209 316 34 77 chr4 14059579 14059788 -170228874 + L2 LINE L2 2855 3054 -218 542 310 51 35 chr4 14059804 14060059 -170228603 - MIR SINE MIR -3 259 1 212 306 42 0 chr4 14060504 14060576 -170228086 - MIR SINE MIR -170 92 18 21 0 0 0 chr4 14061665 14061686 -170226976 + AT_rich Low_complexity Low_complexity 1 21 0 2257 113 3 3 chr4 14061704 14062014 -170226648 - AluSg SINE Alu 0 310 1 306 235 82 12 chr4 14062061 14062146 -170226516 + MIR SINE MIR 73 163 -99 595 282 63 35 chr4 14062213 14062532 -170226130 + LTR16C LTR ERVL 91 418 -73 938 240 21 34 chr4 14062639 14062994 -170225668 - MLT2C1 LTR ERVL -11 652 44 39170 51 3 5 chr4 14062998 14068177 -170220485 + L1PA4 LINE L1 3 5174 -972 4398 41 2 6 chr4 14068177 14068715 -170219947 + L1PA4 LINE L1 5615 6152 -3 206 239 14 0 chr4 14068805 14068876 -170219786 + (TTATA)n Simple_repeat Simple_repeat 4 75 0 791 218 5 21 chr4 14069239 14069427 -170219235 + MER105 DNA DNA 19 203 -1 284 320 81 20 chr4 14069554 14069751 -170218911 + L1ME1 LINE L1 5955 6163 -3 2337 194 14 0 chr4 14070487 14070930 -170217732 + MER70A LTR ERVL 23 471 -1 4559 80 8 6 chr4 14073251 14073885 -170214777 + L1PA10 LINE L1 5534 6168 0 932 181 104 40 chr4 14074140 14074183 -170214479 - MER33 DNA MER1_type -2267 318 279 2019 99 0 66 chr4 14074183 14074509 -170214153 - AluSc SINE Alu 0 306 1 932 181 104 40 chr4 14074509 14074762 -170213900 - MER33 DNA MER1_type -2306 279 1 201 74 0 0 chr4 14075153 14075180 -170213482 + (CA)n Simple_repeat Simple_repeat 2 28 0 261 179 47 38 chr4 14075757 14075863 -170212799 + (TAA)n Simple_repeat Simple_repeat 1 107 0 358 281 160 35 chr4 14075875 14076106 -170212556 - MIR SINE MIR -1 261 2 243 181 278 0 chr4 14076334 14076406 -170212256 + L1MA9 LINE L1 5702 5793 -519 220 189 38 0 chr4 14076406 14076459 -170212203 + (TA)n Simple_repeat Simple_repeat 1 55 0 2013 196 25 6 chr4 14076463 14076947 -170211715 + L1MA9 LINE L1 5799 6291 -21 652 315 119 43 chr4 14077740 14077967 -170210695 + L2 LINE L2 2458 2666 -647 1941 132 48 40 chr4 14077967 14078338 -170210324 + THE1C LTR MaLR 2 375 0 652 315 119 43 chr4 14078338 14078380 -170210282 + L2 LINE L2 2666 2703 -610 2100 156 117 5 chr4 14078380 14078765 -170209897 + MSTA LTR MaLR 1 428 0 652 315 119 43 chr4 14078765 14079282 -170209380 + L2 LINE L2 2703 3307 -6 227 224 250 0 chr4 14080304 14080380 -170208282 - L2 LINE L2 -17 3296 3202 239 279 62 54 chr4 14080445 14080574 -170208088 - MIR SINE MIR -80 182 53 896 20 0 82 chr4 14080627 14080823 -170207839 + (TA)n Simple_repeat Simple_repeat 1 180 0 398 297 16 0 chr4 14080835 14080963 -170207699 - MLT1G1 LTR MaLR -456 139 10 1209 259 57 12 chr4 14080974 14081395 -170207267 + L1MC4 LINE L1 7425 7864 -178 22 56 0 0 chr4 14081458 14081494 -170207168 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr4 14081645 14081671 -170206991 + AT_rich Low_complexity Low_complexity 1 26 0 25 65 0 0 chr4 14082036 14082082 -170206580 + AT_rich Low_complexity Low_complexity 1 46 0 665 213 10 46 chr4 14082489 14082686 -170205976 - MER3 DNA MER1_type -5 204 15 635 148 58 7 chr4 14082689 14082844 -170205818 - L1MA7 LINE L1 0 6291 6129 41526 44 3 1 chr4 14082947 14089086 -170199576 - L1PA3 LINE L1 0 6155 5 1131 52 0 0 chr4 14089228 14089363 -170199299 + AluY SINE Alu 1 135 -176 501 279 54 66 chr4 14089407 14089522 -170199140 + L1ME2 LINE L1 5498 5613 -551 2138 233 12 52 chr4 14089522 14090097 -170198565 + MLT2B3 LTR ERVL 3 554 0 501 279 54 66 chr4 14090097 14090367 -170198295 + L1ME2 LINE L1 5613 5884 -280 23 33 0 0 chr4 14090805 14090835 -170197827 + AT_rich Low_complexity Low_complexity 1 30 0 673 277 22 0 chr4 14090895 14091079 -170197583 + MER5A DNA MER1_type 2 189 0 972 201 18 27 chr4 14091434 14091658 -170197004 + MER92B LTR ERV1 1 222 -414 532 279 32 11 chr4 14091929 14092119 -170196543 + L1MB7 LINE L1 13 206 -6653 3158 159 14 17 chr4 14092168 14092748 -170195914 + L1PB4 LINE L1 5577 6154 -2 4180 239 48 40 chr4 14092780 14093844 -170194818 + L1MB7 LINE L1 4181 5264 -1693 1401 185 6 106 chr4 14093844 14094174 -170194488 - AluJb SINE Alu -4 298 2 4180 239 48 40 chr4 14094174 14094727 -170193935 + L1MB7 LINE L1 5264 5811 -1146 1893 176 0 0 chr4 14094730 14095020 -170193642 - AluJb SINE Alu -22 290 1 2337 97 0 3 chr4 14095043 14095354 -170193308 + AluY SINE Alu 1 310 -1 2626 214 41 49 chr4 14095439 14096353 -170192309 + L1MB7 LINE L1 5976 6875 -120 308 191 225 0 chr4 14096357 14096446 -170192216 - Tigger5 DNA MER2_type 0 2323 2215 286 200 0 0 chr4 14096438 14096493 -170192169 - Tigger5 DNA MER2_type -2268 55 1 * 410 246 0 0 chr4 14096494 14096604 -170192058 + L1MB8 LINE L1 6065 6174 -4 339 228 40 20 chr4 14097121 14097222 -170191440 + Charlie8 DNA MER1_type 75 177 -2240 1135 280 105 42 chr4 14097870 14098746 -170189916 + L2 LINE L2 2170 3164 -149 297 282 8 8 chr4 14098746 14098870 -170189792 + (TA)n Simple_repeat Simple_repeat 2 125 0 299 250 42 89 chr4 14098876 14099044 -170189618 + L2 LINE L2 3115 3274 -39 229 318 9 19 chr4 14099044 14099151 -170189511 - MLT1J LTR MaLR -301 210 105 300 83 0 0 chr4 14099552 14099600 -170189062 + (CA)n Simple_repeat Simple_repeat 1 48 0 267 275 0 38 chr4 14099887 14099967 -170188695 + L2 LINE L2 3194 3270 -2 233 417 37 0 chr4 14100024 14100187 -170188475 - MIR SINE MIR -93 169 1 216 327 18 44 chr4 14100562 14100675 -170187987 - MIR SINE MIR -145 117 8 422 285 161 15 chr4 14101054 14101273 -170187389 - MIR SINE MIR -7 255 5 408 298 78 41 chr4 14101284 14101526 -170187136 - MIR SINE MIR -6 256 6 450 318 73 30 chr4 14102916 14103149 -170185513 + MIR SINE MIR 8 250 -12 189 0 0 0 chr4 14103222 14103243 -170185419 + (ATG)n Simple_repeat Simple_repeat 3 23 0 255 143 41 0 chr4 14103614 14103663 -170184999 - MER94 DNA DNA -79 55 5 1612 95 54 0 chr4 14104643 14104865 -170183797 - L1PA11 LINE L1 -1 6173 5940 2491 76 0 0 chr4 14106204 14106508 -170182154 - AluY SINE Alu -7 304 1 204 313 9 8 chr4 14107019 14107161 -170181501 - MIR3 SINE MIR -1 207 91 271 269 32 43 chr4 14107309 14107402 -170181260 - MIR SINE MIR -48 214 123 395 204 15 193 chr4 14108078 14108342 -170180320 + L2 LINE L2 3093 3309 -4 198 279 93 12 chr4 14109025 14109111 -170179551 - MIR SINE MIR -54 208 116 4399 191 46 22 chr4 14109465 14110434 -170178228 + L1MC2 LINE L1 5341 6333 -11 238 171 32 32 chr4 14111296 14111419 -170177243 + (TA)n Simple_repeat Simple_repeat 2 124 0 45 0 0 0 chr4 14111481 14111526 -170177136 + AT_rich Low_complexity Low_complexity 1 45 0 362 209 41 35 chr4 14111671 14111843 -170176819 + (TTATA)n Simple_repeat Simple_repeat 5 177 0 * 374 206 33 33 chr4 14111775 14111955 -170176707 + (TA)n Simple_repeat Simple_repeat 1 180 0 205 306 42 0 chr4 14113310 14113382 -170175280 + MIR SINE MIR 18 92 -170 509 294 59 43 chr4 14113827 14114082 -170174580 + MIR SINE MIR 1 259 -3 218 330 29 72 chr4 14114098 14114307 -170174355 - L2 LINE L2 -218 3054 2855 812 216 78 47 chr4 14114345 14114600 -170174062 + AluSg SINE Alu 2 264 -46 361 112 17 60 chr4 14115577 14115693 -170172969 + (GAA)n Simple_repeat Simple_repeat 2 112 0 218 316 13 13 chr4 14117050 14117129 -170171533 + MIR SINE MIR 15 93 -169 368 379 17 0 chr4 14118405 14118582 -170170080 - L2 LINE L2 -518 2796 2617 180 0 0 0 chr4 14118969 14118989 -170169673 + (CA)n Simple_repeat Simple_repeat 2 21 0 819 275 94 26 chr4 14120058 14120367 -170168295 + LTR33 LTR ERVL 14 343 -178 924 269 97 17 chr4 14120397 14120917 -170167745 - L2 LINE L2 -45 3268 2713 263 85 21 0 chr4 14120917 14120964 -170167698 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 1763 133 0 24 chr4 14120967 14121260 -170167402 - AluSq SINE Alu -27 286 1 421 297 81 41 chr4 14121525 14121602 -170167060 + MLT1L LTR MaLR 134 206 -409 1986 135 14 3 chr4 14121602 14121899 -170166763 + AluSx SINE Alu 1 300 -12 421 297 81 41 chr4 14121899 14122254 -170166408 + MLT1L LTR MaLR 206 611 -4 897 276 14 9 chr4 14122325 14122546 -170166116 - MER58A DNA MER1_type -1 223 2 27 73 0 0 chr4 14122628 14122683 -170165979 + AT_rich Low_complexity Low_complexity 1 55 0 182 267 58 35 chr4 14123764 14123850 -170164812 + MIR3 SINE MIR 83 170 -38 4378 113 10 3 chr4 14123981 14124593 -170164069 - L1PA7 LINE L1 -5 6149 5534 21 0 0 0 chr4 14126239 14126260 -170162402 + AT_rich Low_complexity Low_complexity 1 21 0 2364 108 0 0 chr4 14126289 14126595 -170162067 - AluSg SINE Alu -4 306 1 2302 66 7 7 chr4 14127064 14127367 -170161295 - AluYa5 SINE Alu -8 303 1 2686 240 43 37 chr4 14177840 14178283 -170110379 + L1MB7 LINE L1 3998 4437 -1709 1426 182 6 106 chr4 14178283 14178613 -170110049 - AluJb SINE Alu -4 298 2 2686 240 43 37 chr4 14178613 14179166 -170109496 + L1MB7 LINE L1 4437 5000 -1146 1893 176 0 0 chr4 14179169 14179459 -170109203 - AluJb SINE Alu -22 290 1 2337 97 0 3 chr4 14179482 14179793 -170108869 + AluY SINE Alu 1 310 -1 2626 214 41 49 chr4 14179878 14180792 -170107870 + L1MB7 LINE L1 5165 6064 -120 308 191 225 0 chr4 14180796 14180885 -170107777 - Tigger5 DNA MER2_type 0 2323 2215 286 200 0 0 chr4 14180877 14180932 -170107730 - Tigger5 DNA MER2_type -2268 55 1 * 410 246 0 0 chr4 14180933 14181043 -170107619 + L1MB8 LINE L1 6065 6174 -4 339 228 40 20 chr4 14181560 14181661 -170107001 + Charlie8 DNA MER1_type 75 177 -2240 1135 280 105 42 chr4 14182309 14183185 -170105477 + L2 LINE L2 2170 3164 -149 297 282 8 8 chr4 14183185 14183309 -170105353 + (TA)n Simple_repeat Simple_repeat 2 125 0 299 250 42 89 chr4 14183315 14183483 -170105179 + L2 LINE L2 3115 3274 -39 229 318 9 19 chr4 14183483 14183590 -170105072 - MLT1J LTR MaLR -301 210 105 300 83 0 0 chr4 14183991 14184039 -170104623 + (CA)n Simple_repeat Simple_repeat 1 48 0 267 275 0 38 chr4 14184326 14184406 -170104256 + L2 LINE L2 3194 3270 -2 233 417 37 0 chr4 14184463 14184626 -170104036 - MIR SINE MIR -93 169 1 216 327 18 44 chr4 14185001 14185114 -170103548 - MIR SINE MIR -145 117 8 422 285 161 15 chr4 14185493 14185712 -170102950 - MIR SINE MIR -7 255 5 408 298 78 41 chr4 14185723 14185965 -170102697 - MIR SINE MIR -6 256 6 450 318 73 30 chr4 14187355 14187588 -170101074 + MIR SINE MIR 8 250 -12 189 0 0 0 chr4 14187661 14187682 -170100980 + (ATG)n Simple_repeat Simple_repeat 3 23 0 255 143 41 0 chr4 14188053 14188102 -170100560 - MER94 DNA DNA -79 55 5 336 284 45 32 chr4 14188879 14189034 -170099628 + L1MB8 LINE L1 5785 5941 -237 22 0 0 0 chr4 14189165 14189187 -170099475 + AT_rich Low_complexity Low_complexity 1 22 0 2840 7 0 0 chr4 14189680 14189987 -170098675 + AluYb8 SINE Alu 1 307 -11 1510 122 36 0 chr4 14190114 14190336 -170098326 - MER30 DNA MER1_type 0 230 1 1941 144 0 43 chr4 14190929 14191255 -170097407 - AluSx SINE Alu 0 312 1 635 311 18 18 chr4 14191398 14191626 -170097036 - MIR SINE MIR -5 257 30 417 54 0 0 chr4 14191966 14192022 -170096640 + (TG)n Simple_repeat Simple_repeat 1 56 0 281 269 39 13 chr4 14192113 14192191 -170096471 - MIR SINE MIR -96 166 87 235 371 75 33 chr4 14192865 14193078 -170095584 - MIR SINE MIR -23 239 18 351 78 0 0 chr4 14193667 14193718 -170094944 + (TG)n Simple_repeat Simple_repeat 2 52 0 1323 178 43 11 chr4 14194056 14194332 -170094330 - L1PB4 LINE L1 -1 6155 5871 506 77 26 0 chr4 14194882 14194960 -170093702 + MADE1 DNA Mariner 1 80 0 1119 271 65 36 chr4 14195183 14195703 -170092959 + L1M4 LINE L1 16 550 -5992 1359 248 31 56 chr4 14195703 14196182 -170092480 - MLT1D LTR MaLR -38 467 1 1949 198 30 51 chr4 14196182 14196688 -170091974 + L1MB7 LINE L1 5614 6108 -76 2370 89 0 10 chr4 14196688 14196992 -170091670 + AluSq SINE Alu 3 303 -10 1949 198 30 51 chr4 14196992 14197057 -170091605 + L1MB7 LINE L1 6108 6173 -11 305 308 39 19 chr4 14197299 14197403 -170091259 - MIR SINE MIR -150 112 7 234 156 0 0 chr4 14197463 14197508 -170091154 + (CAA)n Simple_repeat Simple_repeat 1 45 0 2055 120 3 0 chr4 14198132 14198438 -170090224 + AluSx SINE Alu 1 307 0 208 0 0 0 chr4 14198415 14198466 -170090196 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 21 0 0 0 chr4 14198466 14198487 -170090175 + AT_rich Low_complexity Low_complexity 1 21 0 448 317 144 5 chr4 14199005 14199213 -170089449 + MIR SINE MIR 25 261 -1 1293 120 6 0 chr4 14199270 14199479 -170089183 - AluSg/x SINE Alu 0 318 109 2373 98 0 0 chr4 14199626 14199933 -170088729 + AluSx SINE Alu 1 307 -5 1261 226 57 57 chr4 14199990 14200495 -170088167 + MLT1D LTR MaLR 1 505 0 2198 122 0 0 chr4 14200667 14200970 -170087692 + AluSg SINE Alu 1 303 -7 227 380 103 5 chr4 14201946 14202130 -170086532 - MIR SINE MIR -16 246 45 383 226 94 66 chr4 14202382 14202670 -170085992 - L1MC5 LINE L1 -55 7906 7611 327 256 202 76 chr4 14202952 14203190 -170085472 - L1MC4 LINE L1 -1041 7001 6734 451 309 95 84 chr4 14203241 14203755 -170084907 - L1MC4a LINE L1 -1213 6595 6076 1980 299 61 17 chr4 14203884 14204668 -170083994 - L2 LINE L2 -1178 2136 1318 218 330 107 0 chr4 14205686 14205798 -170082864 + MIR SINE MIR 82 205 -57 205 271 0 43 chr4 14205894 14205964 -170082698 + A-rich Low_complexity Low_complexity 3 69 0 2144 177 48 62 chr4 14205986 14206595 -170082067 + L1MD3 LINE L1 7396 7995 0 277 329 27 14 chr4 14206591 14206810 -170081852 + L1ME1 LINE L1 5601 5822 -299 * 342 242 137 22 chr4 14206819 14207001 -170081661 + L1ME1 LINE L1 5959 6161 -5 345 347 103 14 chr4 14207333 14207546 -170081116 + MIR SINE MIR 4 235 -27 234 150 0 0 chr4 14207587 14207627 -170081035 + (TTA)n Simple_repeat Simple_repeat 2 41 0 269 308 51 34 chr4 14208018 14208135 -170080527 + MIR3 SINE MIR 15 133 -75 294 29 0 0 chr4 14208800 14208835 -170079827 + (TG)n Simple_repeat Simple_repeat 1 35 0 323 215 97 11 chr4 14209201 14209294 -170079368 + MLT1I LTR MaLR 305 405 -4 527 128 0 0 chr4 14209676 14209754 -170078908 + FRAM SINE Alu 22 99 -77 233 309 91 51 chr4 14209784 14209959 -170078703 - L2 LINE L2 -180 3133 2952 403 301 147 6 chr4 14210191 14210347 -170078315 - MER45A DNA AcHobo 0 178 1 393 300 69 6 chr4 14210568 14210728 -170077934 + MIR SINE MIR 20 189 -73 2708 69 11 0 chr4 14211328 14211676 -170076986 + L1PA7 LINE L1 5799 6150 -4 298 310 122 35 chr4 14211760 14211989 -170076673 - L2 LINE L2 -454 2860 2612 640 269 88 63 chr4 14212063 14212301 -170076361 - MIR SINE MIR -1 261 18 1148 129 5 10 chr4 14212430 14212623 -170076039 - L1PB2 LINE L1 -2 6149 5958 1009 189 4 37 chr4 14212796 14213089 -170075573 - MLT1C LTR MaLR 0 467 120 725 217 12 0 chr4 14213245 14213411 -170075251 - MLT1B LTR MaLR -193 197 30 1930 137 126 8 chr4 14213420 14213792 -170074870 - MSTA LTR MaLR -12 416 1 1642 226 62 24 chr4 14213853 14214022 -170074640 + MLT1D LTR MaLR 23 184 -321 2088 139 10 0 chr4 14214022 14214331 -170074331 + AluSp SINE Alu 1 312 -1 1642 226 62 24 chr4 14214331 14214471 -170074191 + MLT1D LTR MaLR 184 317 -188 1213 104 19 160 chr4 14214471 14214585 -170074077 - MER30 DNA MER1_type 0 230 174 2100 145 6 6 chr4 14214585 14214896 -170073766 - AluSq SINE Alu -2 311 1 1213 104 19 160 chr4 14214896 14215049 -170073613 - MER30 DNA MER1_type -56 174 1 1642 226 62 24 chr4 14215049 14215203 -170073459 + MLT1D LTR MaLR 317 505 0 223 275 113 42 chr4 14215992 14216134 -170072528 + MIR SINE MIR 37 188 -74 258 322 83 8 chr4 14217154 14217275 -170071387 - MIR SINE MIR -76 186 57 287 339 62 5 chr4 14217570 14217762 -170070900 + L2 LINE L2 2467 2669 -645 398 351 27 27 chr4 14217883 14218179 -170070483 + MLT1J LTR MaLR 111 406 -105 1391 252 67 39 chr4 14218521 14218986 -170069676 + MLT2F LTR ERVL 186 663 0 856 214 70 41 chr4 14219006 14219249 -170069413 - MIR SINE MIR 0 262 13 188 421 40 16 chr4 14219380 14219506 -170069156 - L2 LINE L2 -11 3261 3133 492 221 0 10 chr4 14219773 14219877 -170068785 + MER5A DNA MER1_type 4 106 -83 462 316 135 5 chr4 14219904 14220119 -170068543 + MIR SINE MIR 15 257 -5 1398 313 86 48 chr4 14220745 14221949 -170066713 + L2 LINE L2 2042 3303 -10 329 333 8 17 chr4 14222457 14222577 -170066085 + L2 LINE L2 3194 3312 -1 21 0 0 0 chr4 14222946 14222967 -170065695 + AT_rich Low_complexity Low_complexity 1 21 0 2200 137 63 31 chr4 14223146 14223561 -170065101 + MSTA LTR MaLR 1 428 0 191 189 19 0 chr4 14223844 14223897 -170064765 + (TAA)n Simple_repeat Simple_repeat 1 54 0 362 361 68 5 chr4 14224259 14224637 -170064025 - L2 LINE L2 0 3313 2830 335 299 123 0 chr4 14225101 14225255 -170063407 - MIR SINE MIR -17 245 73 188 254 127 0 chr4 14225927 14225982 -170062680 - MIR3 SINE MIR -29 179 118 435 352 101 18 chr4 14226063 14226282 -170062380 + MIR SINE MIR 20 256 -6 1378 204 20 56 chr4 14226419 14226812 -170061850 - MLT1C LTR MaLR -8 459 81 2055 140 0 16 chr4 14226817 14227132 -170061530 - AluSg SINE Alu 0 310 1 365 187 28 49 chr4 14227156 14227184 -170061478 - MLT1C LTR MaLR -266 124 97 2026 33 4 0 chr4 14227184 14227429 -170061233 - L1PA5 LINE L1 0 6154 5909 365 187 28 49 chr4 14227429 14227521 -170061141 - MLT1C LTR MaLR -293 97 6 253 308 29 29 chr4 14227526 14227630 -170061032 + L2 LINE L2 3168 3271 -1 1607 176 36 6 chr4 14228635 14228965 -170059697 - MLT1B LTR MaLR -44 346 7 335 313 72 56 chr4 14228966 14229215 -170059447 + L2 LINE L2 3009 3261 -52 247 362 91 26 chr4 14229210 14229638 -170059024 + L2 LINE L2 1963 2418 -896 * 14070 37 2 0 chr4 14229838 14232319 -170056343 + L1PA5 LINE L1 3664 6148 -6 327 78 0 0 chr4 14232345 14232396 -170056266 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 838 245 13 8 chr4 14232666 14232971 -170055691 + LTR16A LTR ERVL 89 437 -13 229 360 30 0 chr4 14232983 14233083 -170055579 + L2 LINE L2 2928 3030 -242 1912 232 17 17 chr4 14233238 14233716 -170054946 - MLT1E2 LTR MaLR -1 625 148 210 313 70 17 chr4 14235345 14235460 -170053202 - L2 LINE L2 -1 3271 3151 790 193 29 63 chr4 14235558 14235765 -170052897 - MER3 DNA MER1_type -8 201 2 268 335 30 36 chr4 14235785 14235952 -170052710 - L2 LINE L2 -225 3047 2882 233 276 78 43 chr4 14236301 14236417 -170052245 - L2 LINE L2 -557 2757 2638 352 268 20 85 chr4 14237336 14237467 -170051195 + MIR SINE MIR 86 206 -56 763 274 54 12 chr4 14237467 14237708 -170050954 + MIR SINE MIR 2 252 -10 1756 109 0 60 chr4 14237898 14238163 -170050499 - AluSq SINE Alu -64 249 1 244 281 92 37 chr4 14238369 14238697 -170049965 + HAL1 LINE L1 1001 1346 -1161 2021 234 31 70 chr4 14238700 14239432 -170049230 + L1ME1 LINE L1 5429 6132 -34 2063 152 0 0 chr4 14239549 14239852 -170048810 + AluSx SINE Alu 1 303 -9 405 228 175 23 chr4 14239867 14240114 -170048548 + HAL1b LINE L1 376 1744 -763 1856 152 10 3 chr4 14240310 14240438 -170048224 + AluSx SINE Alu 1 127 -185 369 0 0 0 chr4 14240438 14240479 -170048183 + (CA)n Simple_repeat Simple_repeat 2 42 0 1856 152 10 3 chr4 14240479 14240660 -170048002 + AluSx SINE Alu 127 312 0 2888 195 29 7 chr4 14241501 14242096 -170046566 - MER73 LTR ERVL -2 642 35 242 325 39 0 chr4 14242313 14242390 -170046272 - L2 LINE L2 -2 3311 3232 461 316 75 0 chr4 14243472 14243659 -170045003 - MIR SINE MIR -36 226 26 410 308 68 12 chr4 14243795 14243985 -170044677 + MIR SINE MIR 36 235 -27 26 0 0 0 chr4 14244584 14244610 -170044052 + AT_rich Low_complexity Low_complexity 1 26 0 693 262 97 17 chr4 14244661 14244898 -170043764 + MIR SINE MIR 7 262 0 254 281 55 31 chr4 14245129 14245257 -170043405 - MLT1K LTR MaLR -290 298 168 1216 249 140 25 chr4 14245261 14245667 -170042995 + MLT1D LTR MaLR 1 453 -52 22 0 0 0 chr4 14245875 14245897 -170042765 + AT_rich Low_complexity Low_complexity 1 22 0 186 237 136 51 chr4 14247620 14247738 -170040924 - MIR SINE MIR -26 236 109 622 252 35 70 chr4 14248812 14249070 -170039592 - MER112 DNA MER1_type -8 252 4 198 333 156 0 chr4 14249741 14249837 -170038825 + MIR SINE MIR 9 119 -143 415 274 61 33 chr4 14250123 14250335 -170038327 + LTR16B LTR ERVL 247 464 0 2865 299 52 8 chr4 14250339 14251236 -170037426 + L2 LINE L2 2112 3074 -239 2074 140 21 56 chr4 14251236 14251614 -170037048 + MLT1A1 LTR MaLR 1 365 0 2865 299 52 8 chr4 14251614 14251866 -170036796 + L2 LINE L2 3074 3313 0 267 274 98 20 chr4 14251866 14251968 -170036694 + MIR SINE MIR 138 247 -15 342 336 13 97 chr4 14252395 14252711 -170035951 - L2 LINE L2 -9 3304 3019 225 224 0 0 chr4 14252914 14252972 -170035690 + (TA)n Simple_repeat Simple_repeat 2 59 0 196 0 118 0 chr4 14253038 14253072 -170035590 + A-rich Low_complexity Low_complexity 3 40 0 5682 112 5 5 chr4 14253082 14254447 -170034215 - L1PA14 LINE L1 -12 6149 4775 1084 246 102 35 chr4 14255103 14255445 -170033217 - MLT1A1 LTR MaLR 0 365 1 25 65 0 0 chr4 14255446 14255492 -170033170 + AT_rich Low_complexity Low_complexity 1 46 0 559 274 117 54 chr4 14256669 14257020 -170031642 - MLT1J1 LTR MaLR -8 438 66 297 356 84 10 chr4 14257163 14257365 -170031297 + MIR SINE MIR 21 237 -25 24 32 0 0 chr4 14257441 14257472 -170031190 + AT_rich Low_complexity Low_complexity 1 31 0 216 301 73 32 chr4 14257738 14257861 -170030801 - MIR SINE MIR -12 250 123 1826 281 77 17 chr4 14258182 14258940 -170029722 + L1MC4 LINE L1 7098 7900 -142 303 241 0 13 chr4 14259037 14259116 -170029546 + L1MC4 LINE L1 7914 7991 -51 249 325 145 20 chr4 14259179 14259379 -170029283 - MIR SINE MIR -2 260 36 1966 107 4 0 chr4 14259552 14259814 -170028848 - AluSx SINE Alu -8 304 42 202 329 175 15 chr4 14259891 14260028 -170028634 - L2 LINE L2 -86 3186 3028 186 43 0 0 chr4 14260185 14260208 -170028454 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 195 129 0 0 chr4 14260989 14261020 -170027642 + (A)n Simple_repeat Simple_repeat 1 31 0 230 192 0 0 chr4 14261282 14261334 -170027328 - L1MC4 LINE L1 -1338 6704 6653 190 270 0 90 chr4 14261864 14261953 -170026709 - MIR SINE MIR -71 137 57 214 287 55 67 chr4 14262153 14262317 -170026345 + MIR3 SINE MIR 32 193 -15 582 109 0 0 chr4 14262591 14262683 -170025979 + (TA)n Simple_repeat Simple_repeat 1 92 0 306 0 0 0 chr4 14262682 14262716 -170025946 + (GA)n Simple_repeat Simple_repeat 2 35 0 * 1959 122 49 7 chr4 14263226 14263514 -170025148 - AluSx SINE Alu -12 300 1 315 179 0 0 chr4 14263952 14264008 -170024654 + L1MC4 LINE L1 6648 6703 -1339 293 223 0 43 chr4 14264023 14264117 -170024545 + L1MC4 LINE L1 6615 6704 -1338 237 108 0 0 chr4 14264174 14264211 -170024451 + (TA)n Simple_repeat Simple_repeat 2 38 0 517 291 71 11 chr4 14264356 14264538 -170024124 + MIR SINE MIR 64 256 -6 969 216 15 29 chr4 14264682 14264886 -170023776 + MER20 DNA MER1_type 1 201 -18 212 256 0 0 chr4 14265245 14265288 -170023374 - L2 LINE L2 -9 3304 3262 1204 198 117 24 chr4 14265294 14265465 -170023197 - MLT1A1 LTR MaLR 0 365 211 315 0 0 0 chr4 14265465 14265500 -170023162 + (GA)n Simple_repeat Simple_repeat 1 35 0 1204 198 117 24 chr4 14265500 14265662 -170023000 - MLT1A1 LTR MaLR -154 211 1 236 230 46 23 chr4 14265663 14265750 -170022912 - L2 LINE L2 -66 3247 3159 191 338 127 25 chr4 14265779 14265936 -170022726 - L2 LINE L2 -254 3059 2887 472 189 78 89 chr4 14267369 14267560 -170021102 + MER53 DNA DNA 1 189 0 34 24 0 0 chr4 14268012 14268053 -170020609 + AT_rich Low_complexity Low_complexity 1 41 0 6957 140 28 4 chr4 14268053 14270207 -170018455 - L1MA3 LINE L1 0 7724 5514 * 10180 138 42 8 chr4 14270202 14271839 -170016823 - L1MA3 LINE L1 -4770 2795 1103 632 143 59 17 chr4 14271833 14271952 -170016710 - L1MA3 LINE L1 -7430 135 12 * 419 171 0 13 chr4 14272530 14272606 -170016056 + MLT1A1 LTR MaLR 289 363 -2 2032 176 17 66 chr4 14273038 14273448 -170015214 + MLT1B LTR MaLR 1 390 0 414 224 67 104 chr4 14273978 14274246 -170014416 - L1MC4 LINE L1 -1040 7002 6745 2464 55 0 16 chr4 14274880 14275192 -170013470 - AluY SINE Alu -4 307 1 1475 199 33 7 chr4 14276127 14276610 -170012052 - AluJb SINE Alu 0 491 1 1373 206 30 43 chr4 14276629 14276809 -170011853 - AluJo SINE Alu -13 299 123 189 0 0 0 chr4 14276809 14276830 -170011832 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1373 206 30 43 chr4 14276830 14276950 -170011712 - AluJo SINE Alu -189 123 3 2181 233 68 70 chr4 14276955 14277469 -170011193 - L1ME1 LINE L1 -51 6115 5601 4397 123 11 51 chr4 14277469 14277490 -170011172 + L1PA13 LINE L1 5470 5490 -673 1633 110 125 26 chr4 14277490 14277754 -170010908 + AluSg1 SINE Alu 5 294 -15 4397 123 11 51 chr4 14277754 14278455 -170010207 + L1PA13 LINE L1 5490 6163 0 2181 233 68 70 chr4 14278455 14278746 -170009916 - L1ME1 LINE L1 -565 5601 5311 2101 103 0 0 chr4 14278809 14279082 -170009580 - AluSc SINE Alu -32 277 5 448 271 159 0 chr4 14279206 14279357 -170009305 - MER5A DNA MER1_type -6 183 9 624 230 25 25 chr4 14279946 14280107 -170008555 + Charlie7 DNA MER1_type 25 185 -2427 455 291 167 40 chr4 14280120 14280574 -170008088 - L2 LINE L2 -952 2362 1851 395 277 121 47 chr4 14280695 14281124 -170007538 - L1ME4a LINE L1 -44 6077 5617 308 250 33 11 chr4 14281381 14281473 -170007189 + GA-rich Low_complexity Low_complexity 1 94 0 2166 134 42 22 chr4 14281495 14281852 -170006810 + THE1B LTR MaLR 1 364 0 206 162 27 0 chr4 14282525 14282562 -170006100 + GA-rich Low_complexity Low_complexity 4 41 0 2494 69 3 0 chr4 14283026 14283332 -170005330 + AluSg SINE Alu 1 307 -3 266 380 33 7 chr4 14284416 14284566 -170004096 + MIR3 SINE MIR 49 202 -6 2374 90 6 0 chr4 14285487 14285798 -170002864 + AluSp SINE Alu 1 313 0 192 77 0 0 chr4 14285811 14285837 -170002825 + (CTA)n Simple_repeat Simple_repeat 2 27 0 646 19 102 0 chr4 14285939 14286145 -170002517 + (TA)n Simple_repeat Simple_repeat 1 226 0 2165 256 55 12 chr4 14286194 14286753 -170001909 - MLT1E LTR MaLR -4 589 7 1114 301 101 26 chr4 14287048 14287655 -170001007 + L3 LINE CR1 807 1458 -119 183 303 124 0 chr4 14287662 14287751 -170000911 - L2 LINE L2 0 3272 3173 355 269 233 47 chr4 14287796 14288049 -170000613 - MLT1I LTR MaLR -17 392 93 183 80 0 0 chr4 14289019 14289044 -169999618 + (TTG)n Simple_repeat Simple_repeat 3 27 0 424 265 30 15 chr4 14289408 14289540 -169999122 - MIR SINE MIR -16 246 113 1368 273 46 71 chr4 14289545 14290007 -169998655 + L1ME3A LINE L1 5258 5695 -475 2151 216 29 79 chr4 14290007 14290590 -169998072 - MLT2B3 LTR ERVL 0 554 1 1368 273 46 71 chr4 14290590 14290885 -169997777 + L1ME3A LINE L1 5695 5996 -174 1096 269 43 41 chr4 14291502 14291655 -169997007 + HsTC2 DNA Tc2 2 153 -1745 1953 233 78 50 chr4 14291655 14291758 -169996904 + MLT1E LTR MaLR 3 102 -491 2246 107 17 0 chr4 14291758 14292056 -169996606 - AluSx SINE Alu -9 303 1 1953 233 78 50 chr4 14292056 14292527 -169996135 + MLT1E LTR MaLR 102 593 0 1096 269 43 41 chr4 14292527 14292787 -169995875 + HsTC2 DNA Tc2 153 419 -1479 1757 198 7 70 chr4 14292787 14293201 -169995461 - MLT1B LTR MaLR 0 390 3 1096 269 43 41 chr4 14293201 14293229 -169995433 + HsTC2 DNA Tc2 419 445 -1453 430 171 0 13 chr4 14293203 14293279 -169995383 - MLT1D LTR MaLR -426 79 5 * 2026 59 0 0 chr4 14293296 14293532 -169995130 + L1PA5 LINE L1 5912 6147 -7 29 60 0 0 chr4 14294040 14294090 -169994572 + AT_rich Low_complexity Low_complexity 1 50 0 1616 188 59 19 chr4 14294259 14294583 -169994079 + MER1B DNA MER1_type 1 337 0 406 264 192 0 chr4 14294766 14294891 -169993771 - MIR SINE MIR -94 168 20 210 279 73 29 chr4 14295638 14295706 -169992956 + L2 LINE L2 3160 3230 -42 2814 81 16 14 chr4 14296505 14296899 -169991763 + L1PA10 LINE L1 5770 6163 -5 226 313 17 35 chr4 14297377 14297492 -169991170 + L2 LINE L2 3155 3267 -5 760 226 53 5 chr4 14297924 14298114 -169990548 - ORSL DNA AcHobo 0 275 77 187 243 29 86 chr4 14299171 14299241 -169989421 + MIR3 SINE MIR 104 169 -39 * 494 259 46 38 chr4 14299240 14299371 -169989291 + MIR SINE MIR 11 142 -120 207 392 31 0 chr4 14299621 14299718 -169988944 + L2 LINE L2 3153 3252 -20 197 229 217 0 chr4 14299748 14299831 -169988831 - MIR3 SINE MIR -41 167 67 270 0 0 0 chr4 14301529 14301559 -169987103 + (A)n Simple_repeat Simple_repeat 1 30 0 216 200 0 0 chr4 14302219 14302274 -169986388 + CT-rich Low_complexity Low_complexity 2 56 0 187 286 24 24 chr4 14305353 14305437 -169983225 + MIR SINE MIR 69 152 -110 24 0 0 0 chr4 14305815 14305839 -169982823 + AT_rich Low_complexity Low_complexity 1 24 0 220 256 47 47 chr4 14305974 14306060 -169982602 + L2 LINE L2 3187 3272 0 188 356 40 0 chr4 14306074 14306175 -169982487 - MIR SINE MIR -77 185 81 250 304 11 11 chr4 14306608 14306700 -169981962 + LTR67 LTR ERVL 428 519 -38 578 271 82 79 chr4 14306984 14307324 -169981338 - MER102b DNA MER1_type 0 341 1 494 275 40 40 chr4 14307508 14307708 -169980954 - L2 LINE L2 -1 3312 3113 241 304 89 45 chr4 14307938 14308050 -169980612 - L2 LINE L2 -17 3255 3139 957 88 15 0 chr4 14308153 14308290 -169980372 - AluSp/q SINE Alu -2 311 173 27 73 0 0 chr4 14308420 14308475 -169980187 + AT_rich Low_complexity Low_complexity 1 55 0 261 196 144 62 chr4 14308786 14308883 -169979779 + L2 LINE L2 3162 3266 -47 202 293 40 30 chr4 14309262 14309361 -169979301 - MIR SINE MIR -107 155 56 727 194 94 0 chr4 14310093 14310263 -169978399 + MER53 DNA DNA 4 189 0 209 362 41 15 chr4 14311161 14311357 -169977305 + MIR SINE MIR 37 237 -25 1881 94 11 0 chr4 14311547 14311813 -169976849 - L1PA8 LINE L1 0 6172 5904 278 248 7 60 chr4 14311977 14312126 -169976536 + GA-rich Low_complexity Low_complexity 1 141 0 255 320 65 20 chr4 14312724 14312877 -169975785 + MIR SINE MIR 94 253 -9 289 253 58 23 chr4 14313113 14313200 -169975462 - MLT1L LTR MaLR -325 290 201 192 316 61 26 chr4 14313596 14313710 -169974952 + MIR SINE MIR 6 123 -139 192 341 32 41 chr4 14313773 14313896 -169974766 + L2 LINE L2 3187 3308 -5 324 299 128 48 chr4 14314381 14314632 -169974030 + MLT1I LTR MaLR 40 310 -99 217 358 159 6 chr4 14315764 14315940 -169972722 - MIR SINE MIR -13 249 47 203 304 0 0 chr4 14316859 14316915 -169971747 + (CA)n Simple_repeat Simple_repeat 1 56 0 481 214 89 9 chr4 14317042 14317154 -169971508 + 5S rRNA rRNA 1 121 0 1483 226 19 19 chr4 14318023 14318386 -169970276 - MLT1A1 LTR MaLR 0 365 3 203 306 41 20 chr4 14318930 14319028 -169969634 - MIR3 SINE MIR -104 104 5 523 278 37 49 chr4 14319136 14319381 -169969281 - MIR SINE MIR -1 261 20 25 31 0 0 chr4 14319430 14319462 -169969200 + AT_rich Low_complexity Low_complexity 1 32 0 217 258 72 10 chr4 14319977 14320074 -169968588 + L2 LINE L2 3199 3301 -12 2171 106 0 3 chr4 14320281 14320592 -169968070 - AluSg SINE Alu 0 310 1 396 296 66 18 chr4 14321203 14321429 -169967233 + MER102a DNA MER1_type 94 330 0 1443 223 13 56 chr4 14321494 14321885 -169966777 - MLT1A2 LTR MaLR 0 374 1 198 311 82 16 chr4 14322053 14322175 -169966487 + MIR3 SINE MIR 34 163 -45 235 273 0 81 chr4 14322866 14322965 -169965697 - MIR SINE MIR 0 262 172 295 308 185 8 chr4 14323338 14323468 -169965194 + MER5A DNA MER1_type 36 188 -1 395 316 76 6 chr4 14324704 14324875 -169963787 - MIR SINE MIR -7 255 73 183 307 99 10 chr4 14324955 14325056 -169963606 + MIR SINE MIR 134 243 -19 189 281 37 37 chr4 14325634 14325716 -169962946 - L2 LINE L2 -5 3267 3186 414 182 40 97 chr4 14326751 14326853 -169961809 + Charlie5 DNA MER1_type 2362 2451 -173 1972 154 0 17 chr4 14326853 14327152 -169961510 + AluSx SINE Alu 1 294 -18 414 182 40 97 chr4 14327152 14327225 -169961437 + Charlie5 DNA MER1_type 2451 2527 -97 458 211 41 8 chr4 14327273 14327396 -169961266 - MIR SINE MIR -59 203 77 248 221 73 0 chr4 14327972 14328040 -169960622 - L1MC4 LINE L1 -1330 6712 6640 187 227 30 0 chr4 14328075 14328141 -169960521 + (TATATG)n Simple_repeat Simple_repeat 2 69 0 213 224 0 0 chr4 14328607 14328665 -169959997 + (CA)n Simple_repeat Simple_repeat 1 58 0 2306 92 14 0 chr4 14329559 14329854 -169958808 + AluSp SINE Alu 1 299 -14 307 215 0 0 chr4 14330171 14330236 -169958426 - MLT1H LTR MaLR -17 532 468 * 452 212 166 72 chr4 14330235 14330428 -169958234 - MLT1H LTR MaLR -228 321 111 1105 200 95 46 chr4 14330637 14330962 -169957700 + MER58B DNA MER1_type 1 341 0 318 237 42 17 chr4 14333468 14333586 -169955076 - MIR SINE MIR -58 204 84 2279 117 0 0 chr4 14335427 14335735 -169952927 + AluSg SINE Alu 1 308 -2 22 0 0 0 chr4 14335735 14335757 -169952905 + AT_rich Low_complexity Low_complexity 1 22 0 244 303 173 12 chr4 14336278 14336440 -169952222 - MIR SINE MIR 0 262 75 262 327 73 9 chr4 14336902 14337012 -169951650 + MIR SINE MIR 25 141 -67 807 259 51 121 chr4 14337212 14337699 -169950963 + LTR16A1 LTR ERVL 1 453 -4 209 298 0 35 chr4 14338085 14338142 -169950520 + L2 LINE L2 3206 3260 -12 193 339 113 11 chr4 14338458 14338635 -169950027 - L3 LINE CR1 -111 1466 1272 430 298 29 12 chr4 14338636 14338807 -169949855 + MIR SINE MIR 7 180 -82 571 255 7 21 chr4 14338970 14339111 -169949551 - MIR SINE MIR -63 199 61 1310 251 92 59 chr4 14339283 14339857 -169948805 + MLT1E LTR MaLR 1 593 0 207 329 37 0 chr4 14340102 14340184 -169948478 - MIR3 SINE MIR -23 185 101 678 244 227 31 chr4 14340427 14340779 -169947883 - MLT1G LTR MaLR 0 590 170 2793 157 10 40 chr4 14342023 14342527 -169946135 - Tigger5 DNA MER2_type 0 2323 1835 1146 219 0 5 chr4 14342531 14342741 -169945921 - Tigger5 DNA MER2_type -2112 211 3 327 246 31 0 chr4 14342747 14342812 -169945850 + MER21B LTR ERV1 23 89 -774 3007 6 0 0 chr4 14342893 14343210 -169945452 - AluYb8 SINE Alu -1 317 1 1134 237 26 82 chr4 14343211 14343553 -169945109 + MER21B LTR ERV1 105 427 -436 * 1575 171 8 8 chr4 14343530 14343794 -169944868 - MSTD LTR MaLR -132 264 1 5459 236 71 75 chr4 14343794 14345535 -169943127 - MSTD-int LTR MaLR 0 1735 2 1902 199 65 0 chr4 14345537 14345909 -169942753 - MSTD LTR MaLR 0 396 1 1181 250 30 31 chr4 14345913 14346277 -169942385 + MER21B LTR ERV1 466 803 -4 43385 36 21 1 chr4 14346432 14352462 -169936200 + L1PA2 LINE L1 3 6155 0 1821 218 35 11 chr4 14352833 14353287 -169935375 + L1MB4 LINE L1 5710 6174 -6 279 133 0 0 chr4 14354106 14354151 -169934511 + (TA)n Simple_repeat Simple_repeat 2 46 0 1133 197 54 47 chr4 14354271 14354732 -169933930 - LTR55 LTR ERV -5 543 2 908 223 43 15 chr4 14354822 14355262 -169933400 - MLT1D LTR MaLR 0 505 3 181 265 0 0 chr4 14355631 14355665 -169932997 - L2 LINE L2 -85 3187 3154 1543 143 87 113 chr4 14355666 14356126 -169932536 - LTR7 LTR ERV1 -2 448 1 4113 174 34 4 chr4 14356169 14356881 -169931781 - ERVL LTR ERVL -1834 3930 3198 209 359 71 12 chr4 14357094 14357264 -169931398 + MIR SINE MIR 83 262 0 192 323 161 19 chr4 14357247 14357402 -169931260 + L2 LINE L2 2977 3153 -160 * 231 277 8 59 chr4 14358874 14358993 -169929669 + (CTGGGG)n Simple_repeat Simple_repeat 3 115 0 418 258 137 0 chr4 14359648 14359772 -169928890 + MIR SINE MIR 29 169 -93 945 199 184 14 chr4 14359935 14360212 -169928450 - MER33 DNA MER1_type 0 324 1 7067 16 9 0 chr4 14360313 14361108 -169927554 - L1PA2 LINE L1 -1 6154 5353 3806 22 0 7 chr4 14361109 14361566 -169927096 + L1PA2 LINE L1 4893 5346 -800 326 279 0 0 chr4 14362639 14362718 -169925944 - L2 LINE L2 -6 3307 3229 335 310 41 41 chr4 14362747 14362892 -169925770 + L2 LINE L2 3169 3313 0 302 355 8 8 chr4 14363042 14363163 -169925499 - MIR SINE MIR -131 131 11 336 167 0 0 chr4 14363367 14363439 -169925223 + GA-rich Low_complexity Low_complexity 3 74 0 203 275 43 14 chr4 14363938 14364007 -169924655 + MIR3 SINE MIR 104 174 -34 409 104 26 13 chr4 14364100 14364177 -169924485 + CT-rich Low_complexity Low_complexity 5 82 0 985 192 0 0 chr4 14364626 14364782 -169923880 - FRAM SINE Alu -21 155 1 236 191 21 0 chr4 14366551 14366598 -169922064 + L2 LINE L2 3261 3308 -5 716 262 41 0 chr4 14366702 14366874 -169921788 + MER97b DNA MER1_type? 1 179 -874 228 316 88 75 chr4 14367006 14367382 -169921280 - L2 LINE L2 0 3313 2933 2400 133 30 25 chr4 14367502 14367864 -169920798 + THE1B LTR MaLR 1 364 0 274 372 0 0 chr4 14368133 14368227 -169920435 - MIR3 SINE MIR -46 162 69 27 49 0 0 chr4 14368990 14369031 -169919631 + AT_rich Low_complexity Low_complexity 1 41 0 7102 167 45 25 chr4 14369330 14369654 -169919008 - Tigger2 DNA MER2_type 0 2718 2402 195 42 0 0 chr4 14369654 14369678 -169918984 + (GGA)n Simple_repeat Simple_repeat 3 26 0 7102 167 45 25 chr4 14369678 14369996 -169918666 - Tigger2 DNA MER2_type -316 2402 2092 198 0 0 0 chr4 14369996 14370018 -169918644 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 7102 167 45 25 chr4 14370018 14370675 -169917987 - Tigger2 DNA MER2_type -626 2092 1393 3399 163 27 13 chr4 14370671 14371291 -169917371 - Tigger2 DNA MER2_type -2089 629 1 * 209 300 0 17 chr4 14372481 14372541 -169916121 + L3 LINE CR1 1258 1316 -261 22 0 0 0 chr4 14372559 14372581 -169916081 + AT_rich Low_complexity Low_complexity 1 22 0 2584 84 14 11 chr4 14372894 14373262 -169915400 - L1P4 LINE L1 -401 5767 5399 1709 83 28 0 chr4 14373262 14373475 -169915187 + L1PA11 LINE L1 5951 6172 -2 272 281 90 0 chr4 14373481 14373570 -169915092 - LTR33 LTR ERVL -424 97 1 2168 140 53 31 chr4 14373671 14374027 -169914635 - THE1B LTR MaLR 0 364 1 338 290 46 8 chr4 14374391 14374522 -169914140 - MIR SINE MIR 0 262 127 1183 279 98 19 chr4 14374529 14374881 -169913781 + LTR16B LTR ERVL 8 400 -64 1334 223 65 46 chr4 14374881 14375248 -169913414 + MLT1A2 LTR MaLR 1 374 0 1183 279 98 19 chr4 14375248 14375315 -169913347 + LTR16B LTR ERVL 400 460 -4 290 320 70 6 chr4 14375712 14375868 -169912794 + MIR SINE MIR 67 232 -30 2526 71 0 0 chr4 14375890 14376201 -169912461 + AluY SINE Alu 1 311 0 359 314 90 16 chr4 14376758 14376946 -169911716 + MIR SINE MIR 49 250 -12 2394 105 0 3 chr4 14377550 14377864 -169910798 - AluSq SINE Alu 0 313 1 646 227 87 43 chr4 14378486 14378541 -169910121 + MIR SINE MIR 57 108 -154 1685 226 43 6 chr4 14378541 14378891 -169909771 + MLT1A1 LTR MaLR 1 363 -2 646 227 87 43 chr4 14378891 14379020 -169909642 + MIR SINE MIR 108 249 -13 308 296 125 11 chr4 14379131 14379307 -169909355 + MIR SINE MIR 25 220 -42 2372 90 0 10 chr4 14379309 14379621 -169909041 + AluY SINE Alu 1 309 -2 186 103 0 0 chr4 14379766 14379795 -169908867 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 349 318 41 35 chr4 14380406 14380576 -169908086 - MIR SINE MIR -76 186 16 1792 194 7 77 chr4 14381085 14381502 -169907160 + MLT1B LTR MaLR 1 388 -2 4315 174 6 17 chr4 14382185 14382969 -169905693 + L1MA8 LINE L1 5513 6288 -3 388 97 14 14 chr4 14383372 14383444 -169905218 + (TG)n Simple_repeat Simple_repeat 1 72 0 1626 186 133 16 chr4 14383537 14383919 -169904743 - MLT1C LTR MaLR -18 449 23 254 356 42 0 chr4 14383941 14384059 -169904603 + MIR SINE MIR 63 185 -77 239 279 0 23 chr4 14385128 14385214 -169903448 - L1MC4 LINE L1 -1339 6703 6620 313 280 133 7 chr4 14386201 14386344 -169902318 + MIR SINE MIR 8 168 -94 316 254 161 17 chr4 14387412 14387530 -169901132 - MIR SINE MIR -125 137 3 307 326 47 8 chr4 14387619 14387748 -169900914 - MIR SINE MIR -70 192 59 358 220 17 127 chr4 14388280 14388398 -169900264 + MIR SINE MIR 49 153 -109 403 321 102 63 chr4 14389669 14390330 -169898332 + L2 LINE L2 2567 3313 0 393 311 93 6 chr4 14390773 14390956 -169897706 + MIR SINE MIR 10 208 -54 203 307 114 23 chr4 14391023 14391111 -169897551 - MIR SINE MIR -136 126 31 187 316 75 128 chr4 14391627 14391893 -169896769 - L2 LINE L2 -34 3238 2987 1601 197 194 21 chr4 14392232 14392659 -169896003 + MLT1D LTR MaLR 5 505 0 267 283 43 43 chr4 14392671 14392798 -169895864 - MIR SINE MIR -62 146 25 228 86 0 0 chr4 14392949 14392984 -169895678 + (A)n Simple_repeat Simple_repeat 1 35 0 473 273 110 53 chr4 14393630 14393839 -169894823 + MLT1H LTR MaLR 326 546 -3 182 189 38 38 chr4 14393843 14393896 -169894766 + L2 LINE L2 1656 1708 -1606 189 239 22 0 chr4 14394981 14395027 -169893635 + L2 LINE L2 3267 3313 0 385 343 20 14 chr4 14395130 14395276 -169893386 - MIR SINE MIR -111 151 5 267 103 0 0 chr4 14395336 14395375 -169893287 + (A)n Simple_repeat Simple_repeat 1 39 0 472 287 94 33 chr4 14396123 14396187 -169892475 + MIR SINE MIR 5 64 -198 1793 242 125 21 chr4 14396187 14396770 -169891892 + LTR48B LTR ERV1 1 644 0 472 287 94 33 chr4 14396770 14396886 -169891776 + MIR SINE MIR 64 196 -66 507 325 142 30 chr4 14397456 14397893 -169890769 + L2 LINE L2 1901 2386 -928 24 0 0 0 chr4 14397980 14398004 -169890658 + AT_rich Low_complexity Low_complexity 1 24 0 205 341 57 11 chr4 14398916 14399004 -169889658 - MIR SINE MIR -140 122 31 27 49 0 0 chr4 14399293 14399334 -169889328 + AT_rich Low_complexity Low_complexity 1 41 0 297 294 33 0 chr4 14399479 14399571 -169889091 - MIR3 SINE MIR -8 200 106 193 373 13 0 chr4 14399968 14400043 -169888619 + MIR SINE MIR 18 93 -169 532 299 95 33 chr4 14400373 14400764 -169887898 - L1ME LINE L1 -352 5769 5355 355 311 165 12 chr4 14401025 14401189 -169887473 + MER5A DNA MER1_type 1 189 0 53 73 0 0 chr4 14401352 14401461 -169887201 + AT_rich Low_complexity Low_complexity 1 109 0 314 282 63 47 chr4 14401531 14401956 -169886706 - L1ME LINE L1 -1381 4765 4334 604 246 15 0 chr4 14402032 14402166 -169886496 - MLT1F1 LTR MaLR 0 593 458 371 125 16 16 chr4 14402180 14402244 -169886418 + L1M2 LINE L1 5685 5748 -543 766 183 172 11 chr4 14402252 14402438 -169886224 - L1PA16 LINE L1 -1 6165 5950 772 226 79 102 chr4 14402439 14402876 -169885786 - MLT1F1 LTR MaLR -138 455 1 319 302 10 0 chr4 14403958 14404054 -169884608 - L2 LINE L2 0 3313 3217 189 179 0 0 chr4 14404134 14404162 -169884500 - L2 LINE L2 -254 3059 3032 246 319 95 59 chr4 14404565 14404917 -169883745 + L2 LINE L2 2715 3075 -197 1330 213 18 18 chr4 14405052 14405338 -169883324 + AluJo SINE Alu 1 286 -26 258 255 88 20 chr4 14405352 14405454 -169883208 + L2 LINE L2 3200 3308 -5 1215 174 27 8 chr4 14405521 14405779 -169882883 - L1MA9 LINE L1 0 6312 6050 1038 162 112 20 chr4 14405781 14405958 -169882704 + MSTB LTR MaLR 3 200 -196 1920 183 85 10 chr4 14405958 14406356 -169882306 - MSTA LTR MaLR 0 428 1 1038 162 112 20 chr4 14406356 14406392 -169882270 + MSTB LTR MaLR 200 231 -165 7950 173 89 13 chr4 14406392 14407893 -169880769 - MSTA-int LTR MaLR -35 1616 1 2268 159 72 8 chr4 14407893 14408295 -169880367 - MSTA LTR MaLR 0 428 1 1120 172 64 5 chr4 14408300 14408503 -169880159 + MSTB LTR MaLR 212 426 0 3622 164 44 65 chr4 14408504 14408756 -169879906 - L1MA9 LINE L1 -259 6053 5797 1357 200 14 0 chr4 14408756 14409046 -169879616 - L1MA4 LINE L1 -6 6294 6001 3622 164 44 65 chr4 14409046 14409275 -169879387 - L1MA9 LINE L1 -515 5797 5565 1976 158 54 35 chr4 14409275 14409643 -169879019 + THE1C LTR MaLR 1 375 0 3622 164 44 65 chr4 14409643 14410238 -169878424 - L1MA9 LINE L1 -747 5565 5005 2722 236 32 0 chr4 14410236 14410945 -169877717 - L1MA9 LINE L1 -2251 3895 3164 * 523 154 0 0 chr4 14411117 14411195 -169877467 - MLT1C LTR MaLR 0 467 390 412 223 117 0 chr4 14411253 14411356 -169877306 + MLT1C LTR MaLR 1 115 -352 317 217 14 0 chr4 14411358 14411427 -169877235 + MLT1C LTR MaLR 398 467 0 340 362 41 23 chr4 14411587 14411808 -169876854 + MIR SINE MIR 12 236 -26 3233 67 10 0 chr4 14412620 14413036 -169875626 - THE1A-int LTR MaLR -1160 420 1 1787 153 7 4 chr4 14413341 14413622 -169875040 - THE1A LTR MaLR -2 353 72 6749 105 0 0 chr4 14413624 14414507 -169874155 + THE1B-int LTR MaLR 698 1580 0 2276 159 5 24 chr4 14414507 14414878 -169873784 + THE1B LTR MaLR 1 364 0 812 292 111 50 chr4 14414884 14415177 -169873485 - L2 LINE L2 -216 3097 2823 288 111 0 0 chr4 14415177 14415222 -169873440 + (TTCA)n Simple_repeat Simple_repeat 4 48 0 1673 169 7 0 chr4 14415229 14415508 -169873154 - AluJo SINE Alu -21 291 11 812 292 111 50 chr4 14415508 14415743 -169872919 - L2 LINE L2 -495 2818 2534 182 250 125 16 chr4 14415776 14415840 -169872822 + MIR SINE MIR 171 241 -21 350 262 19 28 chr4 14415927 14415958 -169872704 + CT-rich Low_complexity Low_complexity 2 32 -75 1906 122 22 0 chr4 14415958 14416229 -169872433 - AluSq SINE Alu -13 300 24 350 262 19 28 chr4 14416229 14416304 -169872358 + CT-rich Low_complexity Low_complexity 32 107 0 435 320 59 39 chr4 14416329 14416585 -169872077 + MIR SINE MIR 2 262 0 285 335 45 80 chr4 14416676 14416876 -169871786 - L2 LINE L2 -94 3178 2986 984 211 36 10 chr4 14417559 14417753 -169870909 - MER58A DNA MER1_type 0 224 26 1502 258 47 47 chr4 14418176 14418707 -169869955 + MLT1H1 LTR MaLR 17 547 -8 222 191 43 21 chr4 14418899 14418946 -169869716 + L2 LINE L2 3023 3070 -202 337 277 12 0 chr4 14419284 14419367 -169869295 - MLT1I LTR MaLR -15 394 311 455 241 105 37 chr4 14419477 14419668 -169868994 - MLT1J2 LTR MaLR -227 223 20 893 211 32 11 chr4 14419872 14420057 -169868605 + MER20 DNA MER1_type 30 218 -1 282 330 70 55 chr4 14420087 14420287 -169868375 - MLT1I LTR MaLR -204 345 143 629 289 80 22 chr4 14420475 14420700 -169867962 + MIR SINE MIR 12 249 -13 400 293 50 20 chr4 14420920 14421118 -169867544 + L3 LINE CR1 1221 1424 -153 298 255 83 78 chr4 14421196 14421388 -169867274 - LTR16C LTR ERVL -104 387 195 238 364 34 0 chr4 14421889 14421977 -169866685 + MIR SINE MIR 80 170 -92 303 322 14 28 chr4 14422269 14422412 -169866250 + MIR3 SINE MIR 62 202 -6 2133 138 21 58 chr4 14422418 14422487 -169866175 - THE1B LTR MaLR 0 364 294 1986 134 7 0 chr4 14422487 14422814 -169865848 - AluSq SINE Alu 0 329 1 2133 138 21 58 chr4 14422814 14423121 -169865541 - THE1B LTR MaLR -70 294 1 262 214 43 29 chr4 14424787 14424857 -169863805 - MIR3 SINE MIR -48 160 90 29 0 0 0 chr4 14425120 14425149 -169863513 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr4 14425570 14425590 -169863072 + (T)n Simple_repeat Simple_repeat 1 20 0 252 0 0 0 chr4 14425723 14425751 -169862911 + (T)n Simple_repeat Simple_repeat 1 28 0 251 296 0 0 chr4 14425768 14425822 -169862840 + L2 LINE L2 3210 3263 -9 345 215 51 0 chr4 14426556 14426635 -169862027 + MER103 DNA DNA 17 99 -67 435 323 64 48 chr4 14427174 14427668 -169860994 - L2 LINE L2 -7 3265 2780 432 0 0 0 chr4 14427668 14427716 -169860946 + (TAA)n Simple_repeat Simple_repeat 2 49 0 435 323 64 48 chr4 14427716 14427748 -169860914 - L2 LINE L2 -492 2780 1960 332 362 59 0 chr4 14428037 14428189 -169860473 + MIR3 SINE MIR 21 181 -27 990 289 179 18 chr4 14428472 14428919 -169859743 - MLT1F LTR MaLR -2 540 22 289 185 0 19 chr4 14429642 14429696 -169858966 + MLT1F1 LTR MaLR 69 121 -446 805 207 72 121 chr4 14429697 14430060 -169858602 + MLT1F1 LTR MaLR 223 567 0 383 254 39 15 chr4 14430064 14430194 -169858468 + MER113 DNA MER1_type? 61 193 -328 301 329 56 14 chr4 14430263 14430406 -169858256 + MIR3 SINE MIR 20 168 -40 180 111 0 0 chr4 14430447 14430474 -169858188 + (TAA)n Simple_repeat Simple_repeat 2 28 0 236 273 45 15 chr4 14430527 14430593 -169858069 - MIR SINE MIR -147 115 48 2326 136 27 41 chr4 14431555 14431924 -169856738 - THE1B LTR MaLR 0 364 1 311 297 45 0 chr4 14432854 14432965 -169855697 + L1ME LINE L1 5727 5842 -279 299 268 125 18 chr4 14433676 14433788 -169854874 + MIR3 SINE MIR 63 186 -22 405 288 220 17 chr4 14433987 14434164 -169854498 - MIR SINE MIR -5 257 45 1976 123 16 16 chr4 14434341 14434649 -169854013 + AluSq SINE Alu 4 311 -2 799 144 11 28 chr4 14434668 14434848 -169853814 + GA-rich Low_complexity Low_complexity 2 178 0 1230 249 42 16 chr4 14434994 14435307 -169853355 - MER87 LTR ERV1 -53 488 168 316 239 80 0 chr4 14435657 14435745 -169852917 - MIR SINE MIR -113 149 55 1874 168 27 0 chr4 14435947 14436245 -169852417 + AluSx SINE Alu 1 306 -6 253 271 76 17 chr4 14436811 14436929 -169851733 - L2 LINE L2 -237 3035 2911 312 283 158 39 chr4 14436949 14437151 -169851511 - MIR SINE MIR -13 249 20 206 61 0 30 chr4 14437324 14437357 -169851305 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 877 145 0 0 chr4 14437361 14437485 -169851177 - AluJb SINE Alu -188 124 1 1939 142 3 0 chr4 14437683 14438027 -169850635 - AluSx SINE Alu 0 345 1 1475 159 58 48 chr4 14438063 14438358 -169850304 + AluSx SINE Alu 1 298 -14 25 0 0 0 chr4 14438905 14438930 -169849732 + AT_rich Low_complexity Low_complexity 1 25 0 481 264 170 13 chr4 14439533 14439692 -169848970 + MER5A DNA MER1_type 4 187 -2 273 357 18 53 chr4 14439768 14439939 -169848723 + MIR3 SINE MIR 38 202 -6 2505 74 0 0 chr4 14440028 14440339 -169848323 + AluY SINE Alu 1 311 0 209 311 162 20 chr4 14441735 14441883 -169846779 - MER5A DNA MER1_type -14 175 7 1378 219 139 39 chr4 14441890 14442250 -169846412 - MSTD LTR MaLR 0 396 1 449 225 79 0 chr4 14442317 14442406 -169846256 - MER5A DNA MER1_type -80 109 14 189 326 0 0 chr4 14442848 14442894 -169845768 + MIR SINE MIR 101 146 -62 1440 197 12 4 chr4 14443698 14443957 -169844705 - AluJo SINE Alu -51 261 1 237 218 18 0 chr4 14444243 14444298 -169844364 - MIR SINE MIR -136 126 71 206 284 0 81 chr4 14444340 14444414 -169844248 + L2 LINE L2 2753 2820 -494 441 312 43 29 chr4 14444643 14444781 -169843881 + L2 LINE L2 3133 3272 0 422 313 31 18 chr4 14445109 14445272 -169843390 + MIR SINE MIR 22 186 -76 636 230 25 77 chr4 14445344 14445576 -169843086 + MIR SINE MIR 45 260 -2 292 315 131 40 chr4 14446126 14446348 -169842314 - L2 LINE L2 -1 3271 3030 340 188 59 40 chr4 14446653 14446754 -169841908 + MER94 DNA DNA 2 104 -30 532 158 44 18 chr4 14446942 14447056 -169841606 + MER53 DNA DNA 1 117 -72 1640 191 75 0 chr4 14447059 14447378 -169841284 + MER2 DNA MER2_type 2 344 0 285 202 9 18 chr4 14447386 14447500 -169841162 + (TA)n Simple_repeat Simple_repeat 1 113 0 299 212 6 18 chr4 14447583 14447753 -169840909 + (TA)n Simple_repeat Simple_repeat 2 169 0 353 132 0 0 chr4 14447910 14447963 -169840699 + MER53 DNA DNA 137 189 0 227 146 24 0 chr4 14448149 14448190 -169840472 - L2 LINE L2 -2 3311 3270 2212 128 22 38 chr4 14448263 14448631 -169840031 + THE1B LTR MaLR 1 362 -2 11522 111 6 27 chr4 14448633 14450247 -169838415 + THE1B-int LTR MaLR 1 1580 0 2226 143 25 27 chr4 14450247 14450612 -169838050 + THE1B LTR MaLR 1 364 0 475 179 15 123 chr4 14450733 14450928 -169837734 - MER96B DNA MER1_type? 0 417 244 21 0 0 0 chr4 14451523 14451544 -169837118 + AT_rich Low_complexity Low_complexity 1 21 0 182 273 82 27 chr4 14451615 14451725 -169836937 - MIR SINE MIR -73 189 74 228 344 0 0 chr4 14452151 14452215 -169836447 - MIR SINE MIR -123 139 76 230 342 128 0 chr4 14452526 14452675 -169835987 - L2 LINE L2 -528 2786 2619 252 375 36 12 chr4 14453723 14453891 -169834771 - MIR SINE MIR -70 192 21 268 99 338 0 chr4 14454359 14454430 -169834232 - HSAT4 Satellite centromeric -10 95 1 225 127 338 0 chr4 14454509 14454580 -169834082 - HSAT4 Satellite centromeric -10 95 1 248 82 328 0 chr4 14454869 14454930 -169833732 - HSAT4 Satellite centromeric -24 81 1 257 113 338 0 chr4 14454984 14455055 -169833607 - HSAT4 Satellite centromeric -10 95 1 264 27 0 0 chr4 14455341 14455378 -169833284 + L1PA2 LINE L1 6113 6149 -6 206 311 14 14 chr4 14455661 14455735 -169832927 + L2 LINE L2 3230 3303 -10 857 229 42 67 chr4 14455790 14456698 -169831964 + L1MC4a LINE L1 6441 7492 -316 476 117 0 64 chr4 14456674 14456768 -169831894 - L1MA4A LINE L1 -365 5937 5850 * 2019 139 26 23 chr4 14456769 14457121 -169831541 + L1MA4A LINE L1 5947 6299 -4 358 283 0 0 chr4 14457122 14457228 -169831434 + L1MC4 LINE L1 7565 7670 -372 1321 188 0 27 chr4 14457304 14457565 -169831097 - AluJo SINE Alu -14 298 45 252 272 192 0 chr4 14457565 14457690 -169830972 + L1MC4 LINE L1 7761 7909 -133 277 274 14 0 chr4 14457766 14457839 -169830823 + GA-rich Low_complexity Low_complexity 3 76 0 392 288 88 33 chr4 14458421 14458636 -169830026 - MIR SINE MIR -18 244 18 251 340 68 0 chr4 14459468 14459571 -169829091 - MIR SINE MIR -7 255 146 1123 171 5 37 chr4 14459584 14459801 -169828861 + MER20 DNA MER1_type 3 212 -7 540 256 36 26 chr4 14460085 14460280 -169828382 + LTR16B LTR ERVL 268 464 0 266 208 119 99 chr4 14460323 14460424 -169828238 - L2 LINE L2 0 3272 3170 228 306 10 0 chr4 14461933 14462031 -169826631 + L1ME LINE L1 5030 5128 -1018 310 284 74 74 chr4 14462117 14462455 -169826207 + L1ME LINE L1 5265 5602 -562 253 231 128 26 chr4 14463930 14464047 -169824615 - MIR SINE MIR -81 181 53 241 277 0 0 chr4 14464110 14464175 -169824487 + L2 LINE L2 2991 3055 -217 1189 135 10 21 chr4 14464317 14464510 -169824152 - MSTA LTR MaLR -2 426 236 * 1810 176 101 16 chr4 14464501 14464888 -169823774 - MER52C LTR ERV1 -831 447 28 655 193 64 70 chr4 14464894 14465065 -169823597 - MIR SINE MIR -57 205 36 273 353 0 0 chr4 14465294 14465396 -169823266 - MIR SINE MIR -110 152 51 252 0 0 0 chr4 14466641 14466669 -169821993 + (T)n Simple_repeat Simple_repeat 1 28 0 492 176 0 11 chr4 14466811 14466902 -169821760 + MSTA LTR MaLR 1 90 -338 189 0 0 0 chr4 14467025 14467046 -169821616 + (T)n Simple_repeat Simple_repeat 1 21 0 252 0 0 0 chr4 14467360 14467388 -169821274 + (T)n Simple_repeat Simple_repeat 1 28 0 1875 165 45 45 chr4 14467529 14467904 -169820758 + THE1C LTR MaLR 1 375 0 223 349 33 54 chr4 14468087 14468328 -169820334 - L3 LINE CR1 -221 1356 1121 400 296 101 32 chr4 14468387 14468664 -169819998 - MLT1L LTR MaLR -10 605 310 270 366 20 0 chr4 14469086 14469187 -169819475 - L3 LINE CR1 -507 1070 968 1125 154 29 0 chr4 14469434 14469642 -169819020 - Tigger7 DNA MER2_type -2 2485 2272 2156 127 0 0 chr4 14469645 14469937 -169818725 + AluSx SINE Alu 1 292 -20 3118 209 3 12 chr4 14469938 14470518 -169818144 - Tigger7 DNA MER2_type -158 575 1 2018 130 3 7 chr4 14470551 14470866 -169817796 - AluSx SINE Alu 0 312 7 1458 199 73 3 chr4 14470967 14471294 -169817368 - MLT1C LTR MaLR -113 354 5 493 270 98 16 chr4 14471375 14471566 -169817096 + MIR SINE MIR 36 236 -26 225 339 102 57 chr4 14471605 14471959 -169816703 - L3 LINE CR1 -1040 537 168 234 268 42 28 chr4 14472170 14472241 -169816421 - MIR SINE MIR -150 112 41 23 33 0 0 chr4 14472486 14472516 -169816146 + AT_rich Low_complexity Low_complexity 1 30 0 979 175 38 0 chr4 14473083 14473243 -169815419 - FAM SINE Alu -9 166 1 325 313 133 7 chr4 14473477 14473627 -169815035 - MIR3 SINE MIR -1 207 39 2392 140 8 36 chr4 14474570 14474956 -169813706 + THE1C LTR MaLR 1 375 0 1443 291 78 21 chr4 14475623 14476431 -169812231 - L1M4 LINE L1 -1729 4417 3564 22 35 0 0 chr4 14476776 14476805 -169811857 + AT_rich Low_complexity Low_complexity 1 29 0 326 323 75 37 chr4 14476898 14477192 -169811470 + L1ME LINE L1 5482 5786 -335 280 274 123 9 chr4 14477456 14477562 -169811100 - MIR SINE MIR -13 249 132 613 306 59 13 chr4 14477780 14478169 -169810493 + L1ME3 LINE L1 3194 3600 -2546 284 246 15 0 chr4 14478204 14478269 -169810393 + LTR16A LTR ERVL 385 450 0 1593 266 34 11 chr4 14478269 14478738 -169809924 + L1ME3 LINE L1 5672 6151 -11 447 288 199 14 chr4 14478934 14479215 -169809447 + LTR33A LTR ERVL 138 470 -53 6063 164 13 6 chr4 14479944 14480997 -169807665 + L1MC1 LINE L1 5275 6332 -1 230 198 52 115 chr4 14481240 14481336 -169807326 - MLT1H LTR MaLR -2 547 458 303 324 95 11 chr4 14481596 14481775 -169806887 + L1ME3 LINE L1 5004 5197 -949 907 301 102 13 chr4 14481875 14482512 -169806150 + L1ME3 LINE L1 5198 5897 -265 2212 102 7 3 chr4 14482830 14483123 -169805539 - AluSc SINE Alu -15 294 1 2135 209 8 8 chr4 14483325 14483708 -169804954 - MLT1B LTR MaLR 0 390 8 186 274 0 0 chr4 14483828 14483879 -169804783 - MIR SINE MIR -24 238 188 2413 177 8 88 chr4 14483906 14484437 -169804225 - LTR42 LTR ERVL -7 488 1 383 299 52 13 chr4 14484437 14484591 -169804071 - MIR SINE MIR -102 160 1 296 82 0 20 chr4 14484637 14484686 -169803976 + (TG)n Simple_repeat Simple_repeat 2 49 0 485 157 0 0 chr4 14485616 14485686 -169802976 - LTR42 LTR ERVL -354 141 72 423 311 61 5 chr4 14485686 14485882 -169802780 + MIR SINE MIR 48 254 -8 191 36 36 0 chr4 14486037 14486065 -169802597 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 184 207 17 52 chr4 14486611 14486669 -169801993 - L3 LINE CR1 -277 1300 1245 43493 35 21 3 chr4 14487017 14493010 -169795652 - L1PA2 LINE L1 -50 6105 1 320 62 0 21 chr4 14493057 14493105 -169795557 + (GGGGA)n Simple_repeat Simple_repeat 2 48 0 257 308 133 17 chr4 14493139 14493259 -169795403 - L2 LINE L2 -595 2719 2586 200 398 0 10 chr4 14493733 14493831 -169794831 + MIR SINE MIR 44 140 -68 454 345 84 4 chr4 14493837 14494075 -169794587 - MIR SINE MIR 0 262 6 795 87 0 0 chr4 14495632 14495736 -169792926 - AluSg/x SINE Alu -8 302 199 1902 138 0 0 chr4 14496412 14496680 -169791982 + AluSx SINE Alu 1 268 -44 252 149 0 0 chr4 14497462 14497509 -169791153 + (TA)n Simple_repeat Simple_repeat 2 48 0 422 359 6 13 chr4 14497509 14497668 -169790994 + MIR SINE MIR 30 187 -75 310 274 75 57 chr4 14497968 14498074 -169790588 - L2 LINE L2 -5 3267 3160 698 269 29 14 chr4 14498511 14498719 -169789943 + MLT1A1 LTR MaLR 1 211 -154 239 309 43 53 chr4 14499227 14499321 -169789341 + MIR SINE MIR 33 125 -83 1208 214 9 9 chr4 14499359 14499583 -169789079 + MER58A DNA MER1_type 1 224 0 217 382 39 17 chr4 14499718 14499896 -169788766 + MIR SINE MIR 68 249 -13 1164 304 40 18 chr4 14500359 14500810 -169787852 + LTR16B LTR ERVL 1 461 -3 272 313 0 0 chr4 14501144 14501208 -169787454 + HERV16 LTR ERVL 364 427 -4569 858 328 44 39 chr4 14501485 14502586 -169786076 + HERV16 LTR ERVL 742 1960 -3036 414 313 93 21 chr4 14502680 14502971 -169785691 + LTR16B LTR ERVL 17 328 -136 239 113 84 56 chr4 14504706 14504777 -169783885 + (TTAAA)n Simple_repeat Simple_repeat 1 73 0 519 156 16 31 chr4 14505567 14505695 -169782967 + CT-rich Low_complexity Low_complexity 1 126 0 1995 199 14 7 chr4 14506036 14506468 -169782194 + L1MA9 LINE L1 5498 5932 -380 962 185 0 0 chr4 14506482 14506829 -169781833 + AluSp SINE Alu 137 313 0 1461 205 33 3 chr4 14506855 14507186 -169781476 + L1MA9 LINE L1 5936 6276 -36 2492 149 29 5 chr4 14507210 14507625 -169781037 + MSTA LTR MaLR 1 425 -3 298 218 100 65 chr4 14508903 14509073 -169779589 + MIR SINE MIR 35 210 -52 796 323 52 17 chr4 14509148 14509510 -169779152 + LTR16C LTR ERVL 6 380 -111 231 368 61 9 chr4 14511081 14511195 -169777467 + MIR3 SINE MIR 5 124 -84 530 174 55 0 chr4 14511379 14511488 -169777174 - Tigger3(Golem) DNA MER2_type -1 3028 2914 1670 160 38 107 chr4 14511488 14512066 -169776596 - MLT2A2 LTR ERVL 0 554 1 1986 137 31 28 chr4 14512070 14512457 -169776205 - Tigger3(Golem) DNA MER2_type -112 2917 2530 368 169 0 0 chr4 14512596 14512655 -169776007 - Tigger3(Golem) DNA MER2_type -2969 60 2 324 284 53 0 chr4 14512791 14512886 -169775776 - MIR SINE MIR -88 174 75 201 195 0 0 chr4 14513104 14513145 -169775517 + A-rich Low_complexity Low_complexity 3 43 0 302 283 142 9 chr4 14513145 14513258 -169775404 + MIR3 SINE MIR 14 141 -67 771 259 14 9 chr4 14513517 14513729 -169774933 - MER20 DNA MER1_type -1 218 6 1084 235 73 32 chr4 14513962 14514133 -169774529 + MLT1A2 LTR MaLR 1 164 -210 381 43 0 0 chr4 14514133 14514180 -169774482 + (TC)n Simple_repeat Simple_repeat 2 48 0 1084 235 73 32 chr4 14514180 14514349 -169774313 + MLT1A2 LTR MaLR 164 355 -19 21 36 0 0 chr4 14514782 14514810 -169773852 + AT_rich Low_complexity Low_complexity 1 28 0 187 273 91 55 chr4 14515173 14515283 -169773379 - L2 LINE L2 -3 3269 3156 296 331 14 36 chr4 14515347 14515486 -169773176 - MIR SINE MIR -93 169 34 1143 199 48 57 chr4 14515895 14516247 -169772415 - MLT1B LTR MaLR 0 390 42 1707 215 10 43 chr4 14516277 14516691 -169771971 - MLT1B-int LTR MaLR -1 1734 1335 1014 269 32 19 chr4 14517428 14517737 -169770925 - L2 LINE L2 0 3313 3001 197 366 0 32 chr4 14518145 14518238 -169770424 - L3 LINE CR1 -234 1343 1254 3756 191 38 24 chr4 14518416 14519198 -169769464 - MER54B LTR ERVL 0 793 1 2107 107 0 27 chr4 14519269 14519569 -169769093 + AluSx SINE Alu 1 292 -20 204 292 50 83 chr4 14520238 14520358 -169768304 - MIR SINE MIR -113 149 34 229 250 119 0 chr4 14520902 14520986 -169767676 - MIR SINE MIR -61 201 108 2234 128 0 0 chr4 14521066 14521372 -169767290 - AluY SINE Alu -5 306 1 1469 144 46 25 chr4 14521373 14521657 -169767005 - Tigger3(Golem) DNA MER2_type -3 3026 2737 241 224 239 0 chr4 14521675 14521742 -169766920 - Tigger3(Golem) DNA MER2_type -2946 83 1 351 279 49 25 chr4 14521742 14521864 -169766798 - MIR SINE MIR -64 198 74 386 367 0 43 chr4 14521918 14522128 -169766534 - MIR SINE MIR -42 220 20 21 0 0 0 chr4 14522894 14522915 -169765747 + AT_rich Low_complexity Low_complexity 1 21 0 201 147 0 0 chr4 14523011 14523045 -169765617 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 258 394 31 8 chr4 14523045 14523172 -169765490 - L2 LINE L2 -2 3270 3141 1774 171 55 24 chr4 14525167 14525630 -169763032 - MLT2A2 LTR ERVL 0 515 21 2875 28 0 0 chr4 14526531 14526895 -169761767 - L1PA2 LINE L1 -3632 2514 2151 23650 31 0 2 chr4 14526895 14530540 -169758122 + L1PA2 LINE L1 2517 6155 0 357 317 49 40 chr4 14531006 14531210 -169757452 - MIR SINE MIR -45 217 11 * 380 296 44 15 chr4 14531206 14531341 -169757321 - MIR SINE MIR -78 184 46 24 0 0 0 chr4 14531579 14531603 -169757059 + AT_rich Low_complexity Low_complexity 1 24 0 236 325 113 6 chr4 14531688 14531848 -169756814 + MIR SINE MIR 20 196 -66 293 68 23 0 chr4 14532323 14532367 -169756295 + (TG)n Simple_repeat Simple_repeat 2 46 0 319 280 110 8 chr4 14532443 14532561 -169756101 + MIR SINE MIR 66 195 -67 261 273 27 0 chr4 14532788 14532898 -169755764 + (TA)n Simple_repeat Simple_repeat 1 113 0 225 328 103 0 chr4 14533795 14533911 -169754751 + MIR SINE MIR 124 251 -11 184 158 66 0 chr4 14535221 14535297 -169753365 + (TA)n Simple_repeat Simple_repeat 2 82 0 322 164 31 63 chr4 14535299 14535458 -169753204 + (TATAA)n Simple_repeat Simple_repeat 1 154 0 2076 139 11 22 chr4 14536245 14536604 -169752058 - THE1A LTR MaLR 0 355 1 215 431 26 0 chr4 14536604 14536757 -169751905 - L2 LINE L2 -682 2632 2476 468 276 85 15 chr4 14537027 14537226 -169751436 + MLT1K LTR MaLR 376 588 0 258 311 45 38 chr4 14537229 14537361 -169751301 - L2 LINE L2 -841 2473 2341 281 319 54 54 chr4 14538139 14538305 -169750357 - MIR3 SINE MIR -13 195 30 300 27 0 0 chr4 14538920 14538957 -169749705 + (TG)n Simple_repeat Simple_repeat 2 38 0 213 39 0 0 chr4 14539172 14539198 -169749464 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1345 225 82 13 chr4 14539226 14539655 -169749007 - MER89 LTR ERV1 0 559 1 218 302 0 0 chr4 14541835 14541888 -169746774 - MIR SINE MIR -134 128 76 753 135 0 0 chr4 14542485 14542648 -169746014 + (TC)n Simple_repeat Simple_repeat 2 164 0 258 269 39 39 chr4 14543583 14543679 -169744983 + MIR SINE MIR 22 115 -93 1166 140 96 19 chr4 14544800 14545071 -169743591 + L1MA9 LINE L1 6018 6309 -3 1185 240 59 81 chr4 14545555 14546100 -169742562 + LTR55 LTR ERV 1 533 -15 2332 91 3 0 chr4 14546574 14546872 -169741790 + AluSq SINE Alu 1 299 -14 434 349 30 20 chr4 14547151 14547501 -169741161 - HERV16 LTR ERVL -3567 1429 1045 1926 142 50 36 chr4 14547501 14547860 -169740802 + THE1B LTR MaLR 1 364 0 434 349 30 20 chr4 14547860 14547998 -169740664 - HERV16 LTR ERVL -3951 1045 910 2889 201 59 10 chr4 14548010 14548683 -169739979 + L1MCa LINE L1 31 736 -5690 30418 37 16 2 chr4 14549054 14555086 -169733576 + L1PA3 LINE L1 3 6153 -2 286 301 104 43 chr4 14555105 14555333 -169733329 - LTR16B LTR ERVL -53 411 162 1455 257 34 5 chr4 14555333 14555718 -169732944 - MSTD LTR MaLR 0 396 1 286 301 104 43 chr4 14555718 14555768 -169732894 - LTR16B LTR ERVL -302 162 116 1993 94 0 4 chr4 14556276 14556542 -169732120 - AluY SINE Alu -3 308 44 205 371 19 9 chr4 14557215 14557320 -169731342 + MER5C DNA MER1_type 19 124 -200 21 0 0 0 chr4 14557479 14557500 -169731162 + AT_rich Low_complexity Low_complexity 1 21 0 1200 73 17 0 chr4 14557992 14558169 -169730493 + (GAA)n Simple_repeat Simple_repeat 1 180 0 626 98 29 0 chr4 14558172 14558274 -169730388 + GA-rich Low_complexity Low_complexity 2 106 0 707 167 25 0 chr4 14559044 14559206 -169729456 + (TCCA)n Simple_repeat Simple_repeat 1 166 0 196 385 122 0 chr4 14560852 14561008 -169727654 - MIR SINE MIR 0 262 88 306 278 31 0 chr4 14563261 14563358 -169725304 + L1MC3 LINE L1 6546 6645 -1140 396 0 0 0 chr4 14563358 14563402 -169725260 + (CA)n Simple_repeat Simple_repeat 1 44 0 529 100 22 0 chr4 14563586 14563676 -169724986 + (GGGGA)n Simple_repeat Simple_repeat 3 94 0 4018 205 26 5 chr4 14563876 14564721 -169723941 - MER6 DNA MER2_type -2 863 1 249 317 18 18 chr4 14564774 14565008 -169723654 + GA-rich Low_complexity Low_complexity 1 234 0 1841 182 41 51 chr4 14565579 14566047 -169722615 + MLT1C LTR MaLR 1 463 -4 189 323 48 0 chr4 14566083 14566145 -169722517 - L2 LINE L2 -14 3258 3194 272 259 172 52 chr4 14566165 14566281 -169722381 - MIR SINE MIR -22 240 111 467 210 68 0 chr4 14566293 14566412 -169722250 - MIR SINE MIR -73 135 4 2305 167 62 2 chr4 14566573 14566975 -169721687 + MSTB LTR MaLR 1 426 0 193 313 0 47 chr4 14567252 14567316 -169721346 + MIR3 SINE MIR 6 66 -142 671 372 62 34 chr4 14567420 14568060 -169720602 - L2 LINE L2 0 3313 2654 267 229 0 0 chr4 14568521 14568591 -169720071 + Ricksha DNA DNA 34 103 -3143 266 121 0 69 chr4 14568596 14568611 -169720051 + ERVL LTR ERVL 5643 5696 -68 322 47 0 0 chr4 14568611 14568654 -169720008 + Ricksha DNA DNA 243 285 -969 * 6524 162 24 20 chr4 14568653 14569248 -169719414 + Ricksha DNA DNA 1690 2281 -973 204 40 0 0 chr4 14569248 14569273 -169719389 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 6524 162 24 20 chr4 14569273 14570174 -169718488 + Ricksha DNA DNA 2281 3241 -13 2019 156 0 0 chr4 14570285 14570580 -169718082 + AluSx SINE Alu 1 295 -17 1654 168 11 4 chr4 14570985 14571259 -169717403 + AluJo SINE Alu 29 304 -8 2083 130 3 29 chr4 14571463 14571779 -169716883 - AluSx SINE Alu -4 308 1 300 138 0 0 chr4 14573524 14573582 -169715080 - L1MA4 LINE L1 -6 6294 6237 251 329 67 34 chr4 14573797 14573946 -169714716 + L2 LINE L2 2620 2773 -541 496 234 16 40 chr4 14574215 14574339 -169714323 - L2 LINE L2 0 3313 3193 290 200 11 84 chr4 14574398 14574470 -169714192 + MER94 DNA DNA 7 72 -62 1852 171 26 0 chr4 14574470 14574774 -169713888 + AluSx SINE Alu 1 312 0 290 200 11 84 chr4 14574774 14574796 -169713866 + MER94 DNA DNA 72 94 -40 5455 109 11 6 chr4 14575042 14576072 -169712590 + L1PA7 LINE L1 4656 5692 -462 1852 134 33 4 chr4 14576072 14576379 -169712283 - AluSq SINE Alu 0 315 1 5455 109 11 6 chr4 14576379 14576781 -169711881 + L1PA7 LINE L1 5692 6091 -63 437 331 32 50 chr4 14577084 14577290 -169711372 + MIR SINE MIR 15 223 -39 4119 212 58 8 chr4 14577330 14578301 -169710361 + MER45B DNA AcHobo 4 1022 -18 229 270 27 0 chr4 14580185 14580259 -169708403 + MLT1H LTR MaLR 279 354 -195 392 260 135 0 chr4 14580722 14580826 -169707836 - MIR SINE MIR -113 149 32 341 331 6 6 chr4 14582086 14582267 -169706395 - LTR33 LTR ERVL -19 502 322 494 300 32 16 chr4 14583221 14583411 -169705251 - MIR SINE MIR -48 214 22 644 264 92 50 chr4 14583598 14584022 -169704640 + MLT1C LTR MaLR 14 467 0 220 280 0 0 chr4 14584157 14584207 -169704455 + L2 LINE L2 3219 3268 -4 235 253 40 27 chr4 14585109 14585184 -169703478 + MIR SINE MIR 175 250 -12 228 35 0 0 chr4 14586352 14586381 -169702281 + (TG)n Simple_repeat Simple_repeat 1 29 0 298 259 27 45 chr4 14586756 14586868 -169701794 - L2 LINE L2 -4 3309 3200 283 362 28 28 chr4 14586898 14587039 -169701623 + L2 LINE L2 3127 3267 -5 224 301 60 24 chr4 14587292 14587375 -169701287 - L2 LINE L2 -251 3021 2936 1898 122 28 106 chr4 14587391 14587786 -169700876 - THE1B LTR MaLR 0 364 1 248 244 37 96 chr4 14588376 14588511 -169700151 - MIR SINE MIR -68 194 68 231 36 0 0 chr4 14588526 14588554 -169700108 + (TG)n Simple_repeat Simple_repeat 1 28 0 388 347 42 21 chr4 14589213 14589406 -169699256 + L2 LINE L2 2644 2840 -474 3690 182 92 1 chr4 14590068 14590825 -169697837 + LTR1B LTR ERV1 1 826 0 473 320 66 5 chr4 14590940 14591253 -169697409 + L1MC/D LINE L1 5258 5589 -598 198 370 14 0 chr4 14592598 14592671 -169695991 - MIR SINE MIR -179 83 10 454 272 8 0 chr4 14592851 14592976 -169695686 + MLT1J1 LTR MaLR 204 329 -117 17628 56 2 2 chr4 14593070 14596548 -169692114 - L1PA5 LINE L1 -4 6150 2599 2079 39 0 4 chr4 14596547 14596826 -169691836 + L1PA5 LINE L1 2295 2572 -3574 * 2085 89 0 7 chr4 14597243 14597513 -169691149 - AluSp SINE Alu -7 306 39 180 321 147 27 chr4 14597782 14597966 -169690696 - MIR SINE MIR -12 250 45 2148 119 3 0 chr4 14598046 14598341 -169690321 - AluSx SINE Alu -14 298 3 203 316 0 0 chr4 14600679 14600736 -169687926 + L2 LINE L2 3216 3272 0 734 230 0 90 chr4 14601291 14601513 -169687149 - MER63A DNA MER1_type -6 204 3 330 71 0 295 chr4 14601634 14601686 -169686976 - MADE1 DNA Mariner 0 80 77 2261 109 7 0 chr4 14601686 14601988 -169686674 + AluSg SINE Alu 1 304 -6 330 71 0 295 chr4 14601988 14602047 -169686615 - MADE1 DNA Mariner -3 77 2 1940 171 3 19 chr4 14602490 14602800 -169685862 + AluSx SINE Alu 1 305 -7 260 254 87 16 chr4 14603091 14603217 -169685445 - L1ME4a LINE L1 -203 5918 5784 268 269 56 19 chr4 14603225 14603333 -169685329 - MLT1F LTR MaLR -428 114 3 2196 110 10 0 chr4 14603456 14603748 -169684914 - AluSp SINE Alu -18 295 1 2015 113 16 0 chr4 14603748 14604066 -169684596 + L1MA8 LINE L1 5460 5782 -509 317 186 14 0 chr4 14604067 14604137 -169684525 + (TATATG)n Simple_repeat Simple_repeat 4 74 0 241 146 55 0 chr4 14604137 14604192 -169684470 - LTR66 LTR ERVL -171 439 382 1247 146 0 47 chr4 14604192 14604337 -169684325 + L1MA8 LINE L1 5800 5929 -362 2386 117 17 3 chr4 14604337 14604695 -169683967 - THE1B LTR MaLR 0 364 2 1247 146 0 47 chr4 14604695 14604803 -169683859 + L1MA8 LINE L1 5929 6041 -250 413 112 124 0 chr4 14604807 14604896 -169683766 + L1MA8 LINE L1 6186 6285 -6 2078 151 19 26 chr4 14605364 14605742 -169682920 + THE1C LTR MaLR 1 375 0 273 208 26 13 chr4 14605877 14605954 -169682708 + MLT1I LTR MaLR 90 167 -242 698 207 30 0 chr4 14606320 14606484 -169682178 - L1MB4 LINE L1 -1 6179 6011 24 0 0 0 chr4 14607719 14607743 -169680919 + AT_rich Low_complexity Low_complexity 1 24 0 34 42 0 0 chr4 14608314 14608362 -169680300 + AT_rich Low_complexity Low_complexity 1 48 0 242 240 0 67 chr4 14608781 14608856 -169679806 + MIR3 SINE MIR 99 168 -40 391 116 66 0 chr4 14609125 14609246 -169679416 + (TA)n Simple_repeat Simple_repeat 2 130 0 347 324 68 33 chr4 14609972 14610308 -169678354 + ERVL LTR ERVL 4105 4452 -1312 218 237 0 17 chr4 14610528 14610587 -169678075 + (TTA)n Simple_repeat Simple_repeat 2 59 0 308 311 119 6 chr4 14610856 14611033 -169677629 - MIR SINE MIR -9 253 57 323 330 20 0 chr4 14611664 14611764 -169676898 + MIR SINE MIR 21 122 -140 341 312 9 0 chr4 14612218 14612327 -169676335 + MIR SINE MIR 83 192 -70 2032 133 14 0 chr4 14612443 14612728 -169675934 + AluSx SINE Alu 15 303 -9 192 293 131 76 chr4 14612744 14612942 -169675720 - L2 LINE L2 -8 3264 3056 342 349 18 0 chr4 14613487 14613596 -169675066 + MIR SINE MIR 51 161 -101 2254 124 22 22 chr4 14614178 14614542 -169674120 - THE1B LTR MaLR 0 364 1 2214 91 46 0 chr4 14614722 14615007 -169673655 + AluY SINE Alu 1 298 -13 1102 280 90 55 chr4 14615255 14615823 -169672839 - MLT1E LTR MaLR -2 591 4 1619 202 16 35 chr4 14615823 14616191 -169672471 - MLT1A1 LTR MaLR 0 365 1 23 0 0 0 chr4 14616344 14616367 -169672295 + AT_rich Low_complexity Low_complexity 1 23 0 198 71 0 0 chr4 14616392 14616420 -169672242 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 211 359 13 0 chr4 14616553 14616631 -169672031 + MIR SINE MIR 3 81 -181 218 200 0 0 chr4 14616710 14616750 -169671912 - MIR SINE MIR -65 143 104 22 35 0 0 chr4 14616799 14616828 -169671834 + AT_rich Low_complexity Low_complexity 1 29 0 2420 85 3 0 chr4 14617295 14617602 -169671060 - AluSp SINE Alu -5 308 1 262 285 130 33 chr4 14618192 14618389 -169670273 + MIR SINE MIR 24 241 -21 234 379 21 0 chr4 14618445 14618540 -169670122 + L2 LINE L2 2751 2847 -467 450 251 18 0 chr4 14618549 14618573 -169670089 - L1MA10 LINE L1 0 6334 6311 2311 255 48 23 chr4 14618573 14620042 -169668620 - L1ME1 LINE L1 -15 6220 4717 1361 96 0 16 chr4 14620042 14620256 -169668406 - AluY SINE Alu 0 310 100 2482 249 45 37 chr4 14620256 14621444 -169667218 - L1ME1 LINE L1 -1494 4721 3524 1599 205 23 6 chr4 14621448 14621795 -169666867 - MLT1A1 LTR MaLR -1 364 12 613 282 94 66 chr4 14621813 14622325 -169666337 - L1ME1 LINE L1 -2705 3510 2992 2299 105 3 0 chr4 14622374 14622680 -169665982 - AluSq SINE Alu -6 307 1 332 249 93 71 chr4 14622687 14623052 -169665610 - L1ME1 LINE L1 -4722 1493 1121 1538 306 72 25 chr4 14623178 14624036 -169664626 - L1ME1 LINE L1 -5408 988 90 569 355 58 37 chr4 14624082 14624460 -169664202 + L2 LINE L2 2889 3274 -39 968 280 86 7 chr4 14624554 14624961 -169663701 - MLT1L LTR MaLR -42 573 135 999 194 12 40 chr4 14625774 14626027 -169662635 - L1MA10 LINE L1 -10 6324 6079 349 329 136 28 chr4 14626199 14626412 -169662250 - MIR SINE MIR -11 251 16 205 343 14 0 chr4 14626460 14626533 -169662129 - MER5A DNA MER1_type -3 186 113 1541 205 20 7 chr4 14626728 14627026 -169661636 + AluJb SINE Alu 1 302 -10 28798 113 10 13 chr4 14627026 14631840 -169656822 + L1P3 LINE L1 658 5457 -697 509 206 8 53 chr4 14632444 14632575 -169656087 - MLT1E1 LTR MaLR -404 250 73 389 216 54 61 chr4 14632473 14632621 -169656041 - MLT2C1 LTR ERVL -250 147 1 * 186 43 0 0 chr4 14633265 14633288 -169655374 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 25 0 0 0 chr4 14633304 14633329 -169655333 + AT_rich Low_complexity Low_complexity 1 25 0 342 339 70 23 chr4 14633796 14633967 -169654695 + MIR SINE MIR 2 180 -82 1140 218 10 95 chr4 14633992 14634391 -169654271 + MLT1A1 LTR MaLR 1 365 0 375 320 133 49 chr4 14635503 14635706 -169652956 - L3 LINE CR1 -71 1506 1287 658 282 6 6 chr4 14635729 14635892 -169652770 + MIR SINE MIR 92 254 -8 230 269 127 52 chr4 14636429 14636563 -169652099 + MIR3 SINE MIR 35 178 -30 348 315 0 9 chr4 14638027 14638138 -169650524 + MIR3 SINE MIR 83 192 -16 207 119 34 17 chr4 14638550 14638609 -169650053 + (TA)n Simple_repeat Simple_repeat 1 60 0 190 237 51 17 chr4 14639011 14639070 -169649592 - MIR SINE MIR -94 168 108 228 35 0 0 chr4 14640190 14640219 -169648443 + (CA)n Simple_repeat Simple_repeat 2 30 0 * 261 0 0 0 chr4 14640218 14640247 -169648415 + (GA)n Simple_repeat Simple_repeat 2 30 0 1229 216 39 35 chr4 14641254 14641592 -169647070 + MLT1F LTR MaLR 204 542 0 207 306 49 49 chr4 14641618 14641762 -169646900 - MIR SINE MIR -29 233 90 2090 103 7 0 chr4 14641872 14642144 -169646518 + AluSg1 SINE Alu 1 274 -35 243 0 0 0 chr4 14642144 14642171 -169646491 + (TA)n Simple_repeat Simple_repeat 1 27 0 312 70 0 0 chr4 14642344 14642387 -169646275 + (TG)n Simple_repeat Simple_repeat 2 44 0 368 255 20 26 chr4 14642656 14642809 -169645853 - LTR16C LTR ERVL 0 491 340 1623 202 7 7 chr4 14642966 14643268 -169645394 - AluJo SINE Alu -10 302 1 216 0 0 0 chr4 14644057 14644081 -169644581 + (A)n Simple_repeat Simple_repeat 1 24 0 456 322 111 10 chr4 14644236 14644444 -169644218 + MIR SINE MIR 13 241 -21 1639 127 70 0 chr4 14644701 14645031 -169643631 - AluSx SINE Alu 0 312 30 187 273 18 18 chr4 14645158 14645213 -169643449 - L2 LINE L2 -17 3296 3242 254 242 0 0 chr4 14645237 14645299 -169643363 + MER4-int LTR ERV1 1103 1164 -5434 686 228 133 71 chr4 14645315 14645713 -169642949 - MLT1D LTR MaLR -3 464 33 180 97 0 0 chr4 14645743 14645774 -169642888 + (TCTCTG)n Simple_repeat Simple_repeat 2 32 0 329 212 0 10 chr4 14645774 14645873 -169642789 + (TA)n Simple_repeat Simple_repeat 2 99 0 1468 225 68 68 chr4 14646925 14647484 -169641178 + MER68 LTR ERV1 4 562 0 321 286 19 65 chr4 14647519 14647673 -169640989 - MIR SINE MIR -83 179 33 289 281 104 36 chr4 14648568 14648741 -169639921 - MIR SINE MIR -63 145 1 4104 108 22 3 chr4 14648846 14649477 -169639185 + L1PA14 LINE L1 5460 6102 -59 5730 234 34 16 chr4 14649577 14650748 -169637914 + Cheshire DNA MER1_type 190 1399 -1021 274 58 58 0 chr4 14650748 14650800 -169637862 + T-rich Low_complexity Low_complexity 5 59 0 5730 234 34 16 chr4 14650800 14651233 -169637429 + Cheshire DNA MER1_type 1399 1823 -597 23 0 0 0 chr4 14651252 14651275 -169637387 + AT_rich Low_complexity Low_complexity 1 23 0 6377 81 17 3 chr4 14651327 14652952 -169635710 - L1PA7 LINE L1 -3 6151 4504 1646 212 0 10 chr4 14652952 14653249 -169635413 - AluJo SINE Alu -17 295 2 1904 195 75 19 chr4 14653251 14653770 -169634892 + Cheshire DNA MER1_type 1843 2390 -30 351 245 93 78 chr4 14654103 14654307 -169634355 + L2 LINE L2 3106 3312 -1 231 380 53 9 chr4 14654779 14654892 -169633770 - MIR SINE MIR -98 164 47 2338 98 7 0 chr4 14655297 14655603 -169633059 + AluSc SINE Alu 1 308 -1 586 241 247 26 chr4 14655685 14656029 -169632633 + L2 LINE L2 2875 3294 -19 197 331 78 39 chr4 14658933 14659087 -169629575 + L2 LINE L2 1542 1701 -1613 511 157 19 0 chr4 14659114 14659222 -169629440 + GA-rich Low_complexity Low_complexity 1 110 0 1099 243 73 9 chr4 14660031 14660373 -169628289 - MLT2D LTR ERVL -50 364 1 902 255 21 29 chr4 14660589 14660832 -169627830 + MIR SINE MIR 1 241 -21 874 263 0 40 chr4 14662335 14662635 -169626027 - MLT1B LTR MaLR -8 382 95 218 267 139 0 chr4 14662787 14662873 -169625789 + L2 LINE L2 3194 3291 -22 437 232 69 111 chr4 14663090 14663359 -169625303 - L1 LINE L1 -830 5316 5060 2507 58 0 3 chr4 14663359 14663668 -169624994 + AluY SINE Alu 1 308 -3 437 232 69 111 chr4 14663668 14663704 -169624958 - L1 LINE L1 -1086 5060 5024 3768 173 53 17 chr4 14663705 14663971 -169624691 + L1MB1 LINE L1 5328 5583 -585 1345 172 118 8 chr4 14663971 14664233 -169624429 + AluSx SINE Alu 1 291 -21 3768 173 53 17 chr4 14664233 14664774 -169623888 + L1MB1 LINE L1 5583 6164 -4 233 245 0 0 chr4 14664814 14664863 -169623799 + MER58A DNA MER1_type 31 79 -28 1983 125 26 42 chr4 14666172 14666355 -169622307 - AluSx SINE Alu -5 307 130 2593 36 0 0 chr4 14666355 14666656 -169622006 - AluY SINE Alu -10 301 1 1983 125 26 42 chr4 14666656 14666784 -169621878 - AluSx SINE Alu -182 130 1 33 0 0 0 chr4 14667392 14667425 -169621237 + AT_rich Low_complexity Low_complexity 1 33 0 331 313 22 8 chr4 14667612 14667746 -169620916 + ERVL LTR ERVL 5034 5169 -595 357 296 0 16 chr4 14667857 14667982 -169620680 + ERVL LTR ERVL 5219 5341 -313 203 319 0 0 chr4 14668035 14668104 -169620558 + (CATATA)n Simple_repeat Simple_repeat 3 71 0 202 157 20 20 chr4 14668402 14668453 -169620209 + GA-rich Low_complexity Low_complexity 5 55 0 1614 203 70 15 chr4 14668660 14669141 -169619521 - L1MA9 LINE L1 -38 6274 5766 452 246 54 125 chr4 14669156 14669436 -169619226 - L1MEd LINE L1 -5003 1116 857 358 239 46 77 chr4 14669508 14669638 -169619024 + L2 LINE L2 3179 3304 -9 520 308 128 15 chr4 14669651 14669924 -169618738 - L1MEd LINE L1 -5391 728 425 353 324 103 0 chr4 14670112 14670257 -169618405 - L1MEd LINE L1 -5924 195 36 378 179 205 46 chr4 14670332 14670483 -169618179 - HAL1 LINE L1 -1 2506 2332 1801 294 119 38 chr4 14671605 14673248 -169615414 - HAL1 LINE L1 -591 1916 142 503 295 40 12 chr4 14673789 14673962 -169614700 - MER91B DNA MER1_type -12 178 1 182 365 12 0 chr4 14674678 14674763 -169613899 - MIR SINE MIR -8 254 169 321 89 0 0 chr4 14675008 14675053 -169613609 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 1706 190 7 0 chr4 14675053 14675332 -169613330 - AluJo SINE Alu -30 282 2 189 0 0 0 chr4 14676162 14676183 -169612479 + (TA)n Simple_repeat Simple_repeat 2 22 0 1710 176 48 38 chr4 14676616 14677171 -169611491 - MLT2A2 LTR ERVL 0 554 1 1790 176 0 97 chr4 14677426 14677858 -169610804 - MLT1B LTR MaLR 0 390 1 664 316 81 27 chr4 14678367 14678931 -169609731 + L2 LINE L2 2626 3210 -103 206 250 213 25 chr4 14679014 14679094 -169609568 - L2 LINE L2 0 3272 3178 407 333 38 25 chr4 14679205 14679445 -169609217 - MIR SINE MIR 0 262 20 506 369 48 34 chr4 14679561 14680025 -169608637 - L2 LINE L2 -78 3235 2767 559 300 53 37 chr4 14680048 14680371 -169608291 - L2 LINE L2 -660 2654 2327 780 294 85 32 chr4 14680381 14680817 -169607845 + LTR33 LTR ERVL 1 459 -62 252 338 39 0 chr4 14681066 14681143 -169607519 + MIR SINE MIR 12 91 -171 714 250 19 0 chr4 14681149 14681309 -169607353 + MIR SINE MIR 13 175 -87 1109 203 48 48 chr4 14681462 14681820 -169606842 + MLT1A1 LTR MaLR 3 428 0 281 277 0 0 chr4 14681982 14682047 -169606615 + CT-rich Low_complexity Low_complexity 1 65 0 300 188 0 0 chr4 14682143 14682212 -169606450 + (TA)n Simple_repeat Simple_repeat 2 70 0 4963 32 0 3 chr4 14682422 14683071 -169605591 - L1P LINE L1 -2451 3695 3049 4970 16 7 0 chr4 14683071 14683668 -169604994 + L1PA3 LINE L1 5574 6180 0 290 276 24 32 chr4 14683747 14683870 -169604792 + L1ME LINE L1 41 162 -5957 508 273 150 48 chr4 14684150 14684377 -169604285 - MIR SINE MIR 0 262 13 333 294 106 39 chr4 14684483 14684663 -169603999 + L1ME LINE L1 2889 3080 -3049 274 242 30 0 chr4 14684958 14685024 -169603638 + (TATATG)n Simple_repeat Simple_repeat 2 69 0 424 244 92 9 chr4 14685180 14685397 -169603265 + L1ME LINE L1 3715 3949 -2180 23 0 0 0 chr4 14685419 14685442 -169603220 + AT_rich Low_complexity Low_complexity 1 23 0 464 319 47 13 chr4 14685549 14685857 -169602805 + L1ME LINE L1 5285 5593 -554 976 191 11 6 chr4 14686035 14686218 -169602444 - MER5A DNA MER1_type 0 189 6 589 292 60 23 chr4 14686230 14686446 -169602216 - MIR SINE MIR -24 238 15 391 336 98 46 chr4 14686477 14687025 -169601637 - L2 LINE L2 -339 2975 2399 211 239 15 45 chr4 14687133 14687200 -169601462 + MIR SINE MIR 30 94 -168 284 224 86 0 chr4 14687313 14687371 -169601291 - L2 LINE L2 -64 3208 3146 340 273 62 31 chr4 14687496 14687624 -169601038 + L2 LINE L2 3140 3271 -1 330 298 0 0 chr4 14688138 14688222 -169600440 - MIR SINE MIR -67 195 112 315 274 100 58 chr4 14688439 14688629 -169600033 - MIR SINE MIR -13 249 52 29 0 0 0 chr4 14688906 14688935 -169599727 + AT_rich Low_complexity Low_complexity 1 29 0 2973 194 94 65 chr4 14689433 14690313 -169598349 + MER21A LTR ERV1 1 906 -25 467 345 82 9 chr4 14690459 14690691 -169597971 - MIR SINE MIR -2 260 12 357 269 168 19 chr4 14691234 14691442 -169597220 - L1ME4a LINE L1 -50 6071 5833 1712 229 79 15 chr4 14691676 14692147 -169596515 - MLT1D LTR MaLR 0 505 5 328 326 17 6 chr4 14692184 14692362 -169596300 - L1ME4a LINE L1 -345 5776 5597 327 312 0 32 chr4 14692376 14692469 -169596193 - L2 LINE L2 -3 3310 3221 885 112 6 19 chr4 14692630 14692791 -169595871 + (TTTC)n Simple_repeat Simple_repeat 1 159 0 22 56 0 0 chr4 14692798 14692834 -169595828 + AT_rich Low_complexity Low_complexity 1 36 0 864 285 13 4 chr4 14693003 14693231 -169595431 - MIR SINE MIR -17 245 16 1881 209 83 9 chr4 14693242 14693677 -169594985 + MLT1C LTR MaLR 1 467 0 40512 36 22 2 chr4 14693943 14699966 -169588696 + L1PA2 LINE L1 13 6155 0 242 346 29 0 chr4 14699971 14700075 -169588587 + MIR SINE MIR 135 241 -21 30 83 0 0 chr4 14700180 14700252 -169588410 + AT_rich Low_complexity Low_complexity 1 72 0 317 87 0 0 chr4 14700252 14700298 -169588364 + MADE1 DNA Mariner 35 80 0 2071 142 7 3 chr4 14700611 14700913 -169587749 + AluSp SINE Alu 1 303 -10 461 212 0 0 chr4 14700944 14701062 -169587600 - L1PA14 LINE L1 0 6161 6044 280 270 27 36 chr4 14901436 14901547 -169387115 - MIR SINE MIR -141 121 12 1062 152 31 42 chr4 14902470 14902661 -169386001 + AluJb SINE Alu 124 312 0 237 256 78 78 chr4 14902947 14903076 -169385586 + MIR3 SINE MIR 11 139 -69 578 96 16 71 chr4 14903432 14903757 -169384905 + (TA)n Simple_repeat Simple_repeat 1 306 0 2142 123 3 16 chr4 14903866 14904176 -169384486 + AluSx SINE Alu 1 306 -6 26 0 0 0 chr4 14904463 14904489 -169384173 + AT_rich Low_complexity Low_complexity 1 26 0 294 129 0 32 chr4 14904519 14904612 -169384050 + (TA)n Simple_repeat Simple_repeat 2 91 0 236 197 136 0 chr4 14904622 14904688 -169383974 - L1ME4a LINE L1 -68 6053 5979 646 155 52 9 chr4 14904895 14905011 -169383651 - L1MB7 LINE L1 -19 6165 6045 241 287 35 11 chr4 14905079 14905166 -169383496 - L1ME4a LINE L1 -2023 5785 5697 526 221 15 23 chr4 14905414 14905545 -169383117 + MIR SINE MIR 108 237 -25 208 309 25 12 chr4 14905692 14905773 -169382889 - MIR SINE MIR -113 149 68 185 321 247 0 chr4 14905983 14906064 -169382598 + L2 LINE L2 3141 3241 -31 195 231 0 0 chr4 14906406 14906445 -169382217 + L2 LINE L2 3148 3186 -86 522 343 56 16 chr4 14906501 14906807 -169381855 + L2 LINE L2 2565 2882 -432 476 266 78 53 chr4 14906855 14907099 -169381563 - MIR SINE MIR 0 262 13 196 337 130 11 chr4 14908276 14908368 -169380294 + L2 LINE L2 3153 3255 -17 210 167 0 48 chr4 14908651 14908693 -169379969 - MIR SINE MIR -9 253 214 291 154 19 0 chr4 14908953 14909005 -169379657 - MSTD LTR MaLR -49 347 295 537 200 10 0 chr4 14909083 14909183 -169379479 - MSTD LTR MaLR -293 103 3 2048 155 44 8 chr4 14909183 14909545 -169379117 + MER34C LTR ERV1 203 577 -8 910 297 81 26 chr4 14909536 14909920 -169378742 + MLT1J1 LTR MaLR 42 446 0 * 286 360 34 27 chr4 14910149 14910296 -169378366 + L2 LINE L2 2955 3102 -170 2034 168 40 0 chr4 14910442 14910769 -169377893 + MER2 DNA MER2_type 2 341 -3 277 314 12 12 chr4 14911979 14912065 -169376597 - MER5A DNA MER1_type -100 89 4 369 223 58 29 chr4 14912196 14912299 -169376363 - MER103 DNA DNA -1 165 60 389 299 186 9 chr4 14912952 14913173 -169375489 + MIR SINE MIR 3 262 0 343 189 174 15 chr4 14913184 14913316 -169375346 + L1ME4a LINE L1 5965 6117 -4 227 237 75 21 chr4 14913336 14913429 -169375233 + L1ME4a LINE L1 5991 6088 -33 305 325 46 100 chr4 14913922 14914202 -169374460 - L2 LINE L2 -4 3268 3004 1304 140 49 101 chr4 14914406 14914713 -169373949 - MER7A DNA MER2_type -57 289 1 2192 155 69 5 chr4 14914733 14915120 -169373542 - MLT2C2 LTR ERVL -49 404 11 867 278 101 32 chr4 14916624 14917324 -169371338 + L2 LINE L2 2563 3312 -1 2706 120 81 15 chr4 14917405 14917864 -169370798 - L1PA16 LINE L1 -9 6157 5669 216 227 0 0 chr4 14918578 14918622 -169370040 - L2 LINE L2 -5 3267 3224 1460 280 50 50 chr4 14918782 14919654 -169369008 - L2 LINE L2 0 3313 2436 371 225 127 42 chr4 14919684 14919826 -169368836 + MIR SINE MIR 83 236 -26 293 339 8 25 chr4 14919931 14920052 -169368610 + MIR SINE MIR 31 149 -59 857 236 22 0 chr4 14920085 14920263 -169368399 + MER58A DNA MER1_type 40 221 -3 402 68 105 6 chr4 14920975 14921137 -169367525 + (TA)n Simple_repeat Simple_repeat 2 179 0 424 78 96 13 chr4 14921162 14921465 -169367197 + (TA)n Simple_repeat Simple_repeat 1 328 0 1555 182 28 85 chr4 14921493 14921845 -169366817 - Tigger3(Golem) DNA MER2_type -2 3027 16 32 43 0 0 chr4 14921845 14921891 -169366771 + AT_rich Low_complexity Low_complexity 1 46 0 1147 214 110 18 chr4 14921920 14922201 -169366461 + MER2 DNA MER2_type 7 313 -32 266 206 0 33 chr4 14922205 14922297 -169366365 + (TATAA)n Simple_repeat Simple_repeat 5 93 0 1773 128 44 24 chr4 14922657 14922953 -169365709 - AluSx SINE Alu -10 302 1 189 0 0 0 chr4 14923012 14923033 -169365629 + (TCCA)n Simple_repeat Simple_repeat 1 21 0 1967 106 7 11 chr4 14924064 14924346 -169364316 + AluSx SINE Alu 31 311 -1 28 0 0 0 chr4 14924716 14924744 -169363918 + AT_rich Low_complexity Low_complexity 1 28 0 23 68 0 0 chr4 14925465 14925509 -169363153 + AT_rich Low_complexity Low_complexity 1 44 0 317 363 70 37 chr4 14925509 14925724 -169362938 - MIR SINE MIR -7 255 34 267 160 40 27 chr4 14925737 14925812 -169362850 + (TATATG)n Simple_repeat Simple_repeat 6 81 0 311 304 14 86 chr4 14926006 14926226 -169362436 + MIR SINE MIR 10 213 -49 621 254 36 82 chr4 14926706 14926926 -169361736 + MER63A DNA MER1_type 1 210 0 222 313 38 12 chr4 14927216 14927296 -169361366 - L2 LINE L2 -181 3091 3010 420 232 77 97 chr4 14927398 14927478 -169361184 - MIR SINE MIR -43 219 139 1324 249 135 29 chr4 14927478 14927931 -169360731 + MLT1D LTR MaLR 1 501 -4 420 232 77 97 chr4 14927931 14928057 -169360605 - MIR SINE MIR -123 139 17 4169 79 9 11 chr4 14928265 14928797 -169359865 - L1PA11 LINE L1 -2 6172 5642 323 257 37 74 chr4 14929015 14929213 -169359449 + MIR SINE MIR 30 220 -42 266 318 147 40 chr4 14930304 14930502 -169358160 - MLT1K LTR MaLR -367 221 3 220 211 0 70 chr4 14931419 14931476 -169357186 - L2 LINE L2 0 3313 3261 211 204 0 23 chr4 14931812 14931856 -169356806 + CT-rich Low_complexity Low_complexity 3 45 0 408 71 0 0 chr4 14931954 14932010 -169356652 + (GA)n Simple_repeat Simple_repeat 2 57 0 204 200 0 0 chr4 14932107 14932157 -169356505 + (TG)n Simple_repeat Simple_repeat 2 51 0 634 314 105 66 chr4 14932714 14933607 -169355055 + L1MEd LINE L1 2 929 -5190 225 239 23 79 chr4 14933829 14933919 -169354743 + MIR SINE MIR 65 148 -64 409 226 6 94 chr4 14934527 14934708 -169353954 - LTR67 LTR ERVL -21 536 372 2436 114 50 11 chr4 14934855 14935213 -169353449 - THE1C LTR MaLR -3 372 1 1269 143 24 0 chr4 14935218 14935428 -169353234 + L1MA8 LINE L1 6074 6288 -3 184 353 86 9 chr4 14935719 14935835 -169352827 + L2 LINE L2 3182 3306 -7 221 369 41 25 chr4 14936265 14936387 -169352275 - L2 LINE L2 -10 3262 3139 236 29 0 29 chr4 14936560 14936594 -169352068 + (TC)n Simple_repeat Simple_repeat 2 34 0 350 314 127 34 chr4 14936954 14937190 -169351472 - MIR SINE MIR -3 259 2 * 548 284 69 95 chr4 14937190 14937785 -169350877 - L2 LINE L2 -35 3237 2628 252 0 0 0 chr4 14937785 14937813 -169350849 + (TG)n Simple_repeat Simple_repeat 1 28 0 237 33 0 0 chr4 14937812 14937842 -169350820 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 548 284 69 95 chr4 14937813 14937978 -169350684 - L2 LINE L2 -644 2628 2522 200 365 77 37 chr4 14938260 14938638 -169350024 + L2 LINE L2 2343 2735 -579 655 75 69 0 chr4 14938947 14939106 -169349556 + (TA)n Simple_repeat Simple_repeat 2 171 0 189 107 0 0 chr4 14939106 14939134 -169349528 + (CA)n Simple_repeat Simple_repeat 2 29 0 960 246 93 108 chr4 14939246 14939689 -169348973 + MLT1J2 LTR MaLR 3 442 -8 23 0 0 0 chr4 14940308 14940331 -169348331 + AT_rich Low_complexity Low_complexity 1 23 0 184 110 79 39 chr4 14940346 14940473 -169348189 + (TATAA)n Simple_repeat Simple_repeat 5 136 0 1079 196 0 0 chr4 14940593 14940756 -169347906 + FAM SINE Alu 1 163 -12 217 325 12 24 chr4 14940825 14940908 -169347754 - MIR SINE MIR -169 93 12 195 302 47 0 chr4 14940954 14941040 -169347622 - MIR SINE MIR 0 262 173 245 253 0 10 chr4 14941066 14941165 -169347497 + (TA)n Simple_repeat Simple_repeat 1 98 0 2704 158 2 38 chr4 14941165 14941613 -169347049 - Tigger2a DNA MER2_type 0 434 3 341 300 45 0 chr4 14941677 14941787 -169346875 - MIR SINE MIR -104 158 44 317 323 105 23 chr4 14941831 14941964 -169346698 + L2 LINE L2 3124 3267 -5 2106 138 0 0 chr4 14942856 14943152 -169345510 + AluSx SINE Alu 1 296 -16 3447 265 110 52 chr4 14943693 14945009 -169343653 + HAL1 LINE L1 279 1759 -748 1256 154 10 5 chr4 14945009 14945217 -169343445 - L1PA14 LINE L1 -2 6159 5951 3447 265 110 52 chr4 14945217 14945972 -169342690 + HAL1 LINE L1 1759 2469 -38 21 36 0 0 chr4 14946159 14946187 -169342475 + AT_rich Low_complexity Low_complexity 1 28 0 340 292 155 9 chr4 14946239 14946458 -169342204 + L1M4 LINE L1 4075 4325 -1821 24 0 0 0 chr4 14947393 14947417 -169341245 + AT_rich Low_complexity Low_complexity 1 24 0 223 310 35 11 chr4 14947481 14947568 -169341094 + MIR SINE MIR 29 117 -145 193 320 0 13 chr4 14947573 14947651 -169341011 - MIR SINE MIR -5 257 181 226 224 66 13 chr4 14947665 14947741 -169340921 + MIR SINE MIR 151 230 -32 1367 145 19 0 chr4 14948345 14948559 -169340103 + L1PB2 LINE L1 5934 6151 0 1296 158 5 0 chr4 14948569 14948772 -169339890 + L1MC1 LINE L1 6118 6321 -12 234 220 17 0 chr4 14948912 14948971 -169339691 + (TA)n Simple_repeat Simple_repeat 2 61 0 333 0 0 0 chr4 14948971 14949008 -169339654 + (CA)n Simple_repeat Simple_repeat 2 38 0 431 256 62 8 chr4 14949190 14949319 -169339343 + MIR SINE MIR 19 154 -108 192 125 0 0 chr4 14949630 14949662 -169339000 + (TCC)n Simple_repeat Simple_repeat 3 34 0 791 292 68 0 chr4 14949754 14949973 -169338689 + MIR SINE MIR 16 249 -13 288 274 153 8 chr4 14949993 14950117 -169338545 - MIR3 SINE MIR -63 145 4 296 279 66 41 chr4 14950194 14950316 -169338346 + L2 LINE L2 3189 3313 0 996 66 0 0 chr4 14950513 14950635 -169338027 + L1PA5 LINE L1 6032 6153 -1 2986 89 18 0 chr4 14950635 14951024 -169337638 + L1PA10 LINE L1 5769 6167 -1 206 246 35 88 chr4 14951392 14951506 -169337156 - MIR SINE MIR -70 192 85 598 206 48 7 chr4 14951785 14951931 -169336731 + MIR SINE MIR 4 155 -107 258 298 70 18 chr4 14951930 14952044 -169336618 + L3 LINE CR1 1351 1470 -107 * 239 257 158 0 chr4 14952101 14952202 -169336460 - MIR3 SINE MIR -87 121 5 297 313 78 36 chr4 14952227 14952368 -169336294 - MER5B DNA MER1_type -5 173 23 2424 193 26 15 chr4 14952368 14952829 -169335833 - MLT1C LTR MaLR 0 467 2 297 313 78 36 chr4 14952829 14952853 -169335809 - MER5B DNA MER1_type -155 23 1 209 212 153 12 chr4 14952914 14952999 -169335663 - MER5A DNA MER1_type -77 112 16 22 56 0 0 chr4 14953543 14953579 -169335083 + GC_rich Low_complexity Low_complexity 1 36 0 627 200 90 0 chr4 14954612 14954767 -169333895 - MIR SINE MIR -8 254 86 305 242 75 8 chr4 14954800 14954920 -169333742 + MIR SINE MIR 65 192 -70 313 254 45 27 chr4 14955163 14955273 -169333389 + MIR3 SINE MIR 67 178 -30 423 293 62 9 chr4 14955389 14955547 -169333115 - MIR SINE MIR -62 146 19 858 280 116 36 chr4 14956445 14956884 -169331778 - MLT1J LTR MaLR -7 504 31 12074 33 0 1 chr4 14957392 14959554 -169329108 + L1PA3 LINE L1 4022 6185 0 418 264 79 14 chr4 14960102 14960242 -169328420 + L2 LINE L2 3165 3313 0 1527 215 105 33 chr4 14960953 14961381 -169327281 + MLT1C LTR MaLR 6 464 -3 2726 10 0 0 chr4 14961498 14961791 -169326871 - AluYa5 SINE Alu -18 293 1 667 263 35 48 chr4 14962244 14962533 -169326129 - L1ME LINE L1 -317 5804 5520 1530 247 57 46 chr4 14962629 14963191 -169325471 + L1ME3 LINE L1 5594 6161 -1 606 260 166 37 chr4 14963623 14963973 -169324689 + L2 LINE L2 2015 2409 -905 389 235 29 52 chr4 14964068 14964204 -169324458 + L2 LINE L2 3181 3313 0 231 325 92 25 chr4 14964474 14964637 -169324025 + MIR SINE MIR 76 249 -13 2199 92 19 11 chr4 14964674 14965095 -169323567 - L1P4 LINE L1 -696 5472 5050 1246 55 0 0 chr4 14965095 14965239 -169323423 + L1PA10 LINE L1 6024 6168 0 23 33 0 0 chr4 14965319 14965349 -169323313 + AT_rich Low_complexity Low_complexity 1 30 0 481 88 25 0 chr4 14965495 14965575 -169323087 + (TC)n Simple_repeat Simple_repeat 1 82 0 1012 166 78 29 chr4 14965576 14965781 -169322881 - AluJo SINE Alu -40 272 58 303 279 102 57 chr4 14965882 14966165 -169322497 - L2 LINE L2 -571 2743 2448 402 21 0 0 chr4 14966232 14966279 -169322383 + (CA)n Simple_repeat Simple_repeat 2 48 0 185 244 70 81 chr4 14966359 14966445 -169322217 + L2 LINE L2 3188 3272 0 287 275 99 0 chr4 14967054 14967145 -169321517 - L3 LINE CR1 -4 1573 1474 202 237 0 105 chr4 14967398 14967474 -169321188 - L2 LINE L2 -8 3264 3197 * 995 291 109 75 chr4 14967462 14967532 -169321130 + L2 LINE L2 1916 1982 -1331 2136 131 0 0 chr4 14967532 14967823 -169320839 - AluY SINE Alu -20 291 1 995 291 109 75 chr4 14967823 14968838 -169319824 + L2 LINE L2 1982 3033 -280 373 328 59 71 chr4 14969051 14969389 -169319273 + L2 LINE L2 2924 3257 -15 341 236 304 40 chr4 14970178 14970326 -169318336 - MIR3 SINE MIR -5 203 17 318 321 0 27 chr4 14970885 14970997 -169317665 + MER5A DNA MER1_type 4 112 -77 185 259 241 18 chr4 14971132 14971244 -169317418 + L2 LINE L2 3136 3272 0 715 99 10 0 chr4 14971946 14972047 -169316615 + MER5A DNA MER1_type 9 110 -79 366 314 70 73 chr4 14972791 14973106 -169315556 - L2 LINE L2 -48 3224 2911 6271 121 72 3 chr4 14973518 14974871 -169313791 - L1PA12 LINE L1 -1 6167 4704 309 276 75 65 chr4 14975213 14975427 -169313235 + MIR SINE MIR 5 220 -42 1671 177 0 31 chr4 14975990 14976307 -169312355 + AluJb SINE Alu 4 310 -2 438 162 0 0 chr4 14976395 14976463 -169312199 - AluS SINE Alu -15 297 230 643 203 31 0 chr4 14976563 14976691 -169311971 - MER58A DNA MER1_type 0 150 19 260 333 26 0 chr4 14976841 14976919 -169311743 - MIR SINE MIR -157 105 26 647 269 201 19 chr4 14978187 14978496 -169310166 + MLT1I LTR MaLR 43 407 -2 699 318 90 36 chr4 14979377 14979742 -169308920 + L2 LINE L2 2929 3313 0 341 335 39 11 chr4 14980243 14980422 -169308240 + MER117 DNA MER1_type 4 187 -10 452 192 10 0 chr4 14980969 14981068 -169307594 + CT-rich Low_complexity Low_complexity 3 102 0 582 364 77 36 chr4 14981297 14981750 -169306912 + L2 LINE L2 2278 2760 -554 2152 192 103 9 chr4 14981750 14982177 -169306485 + MLT1C LTR MaLR 1 467 0 582 364 77 36 chr4 14982177 14982284 -169306378 + L2 LINE L2 2760 2861 -453 388 301 84 0 chr4 14982687 14982830 -169305832 + MIR3 SINE MIR 19 173 -35 230 308 87 47 chr4 14984019 14984191 -169304471 - MIR SINE MIR -72 190 12 272 306 88 20 chr4 14984821 14984968 -169303694 + MLT1F LTR MaLR 114 270 -279 425 299 29 15 chr4 14985712 14985849 -169302813 - MIR3 SINE MIR -54 154 16 448 230 111 15 chr4 14986083 14986218 -169302444 + MIR3 SINE MIR 10 157 -51 231 36 0 0 chr4 14986545 14986573 -169302089 + (CA)n Simple_repeat Simple_repeat 2 29 0 306 295 98 8 chr4 14986824 14986946 -169301716 - MIR SINE MIR -2 260 128 397 222 207 14 chr4 14987252 14987493 -169301169 + MLT1F LTR MaLR 279 534 -8 1609 155 104 93 chr4 14988148 14988534 -169300128 - MLT1B LTR MaLR 0 390 1 25 0 0 0 chr4 14988552 14988577 -169300085 + AT_rich Low_complexity Low_complexity 1 25 0 1479 168 50 20 chr4 14988709 14989007 -169299655 + L1MB8 LINE L1 5867 6173 -5 235 239 0 45 chr4 14989022 14989089 -169299573 + L3 LINE CR1 1512 1575 -2 247 274 0 0 chr4 14989094 14989145 -169299517 + MIR3 SINE MIR 104 154 -54 630 260 64 52 chr4 14989217 14989467 -169299195 + MIR SINE MIR 8 260 -2 317 364 31 23 chr4 14989765 14989894 -169298768 - L2 LINE L2 -4 3268 3139 457 300 21 26 chr4 14990924 14991115 -169297547 + MIR SINE MIR 20 208 -54 2683 92 3 41 chr4 14991248 14991617 -169297045 + THE1A LTR MaLR 1 355 0 908 247 17 0 chr4 14991806 14991980 -169296682 + MER45A DNA AcHobo 1 177 -1 412 277 0 0 chr4 14992402 14992485 -169296177 + L2 LINE L2 3188 3270 -2 780 266 174 13 chr4 14993274 14993653 -169295009 - LTR16A LTR ERVL -2 448 9 1137 122 0 6 chr4 14993783 14993955 -169294707 - AluSp SINE Alu -9 304 134 201 39 0 0 chr4 14993960 14993986 -169294676 + (TTA)n Simple_repeat Simple_repeat 1 26 0 2161 97 3 7 chr4 14993986 14994268 -169294394 - AluSp SINE Alu -32 281 1 186 353 12 47 chr4 14994565 14994650 -169294012 - L2 LINE L2 0 3313 3232 3052 214 22 17 chr4 14995186 14995821 -169292841 - MER82 DNA MER2_type 0 653 16 992 249 65 49 chr4 14995840 14996346 -169292316 - HAL1b LINE L1 -177 1171 658 371 20 0 20 chr4 14996431 14996480 -169292182 + (CA)n Simple_repeat Simple_repeat 2 49 0 1668 134 26 11 chr4 14996534 14996803 -169291859 + L1PB1 LINE L1 5878 6150 -1 659 210 11 45 chr4 14996831 14997007 -169291655 + MER104 DNA Tc2 1 170 -10 507 319 144 20 chr4 14997195 14997487 -169291175 + L3 LINE CR1 1238 1565 -12 680 203 0 8 chr4 14998043 14998171 -169290491 + MER119 DNA MER1_type 457 583 0 2642 275 85 71 chr4 14998479 15000401 -169288261 - HAL1 LINE L1 -109 2398 450 847 229 22 11 chr4 15000435 15000614 -169288048 - MSTB LTR MaLR -32 394 214 2141 103 0 3 chr4 15001401 15001719 -169286943 + AluY SINE Alu 1 317 0 189 301 229 54 chr4 15002435 15002601 -169286061 + L2 LINE L2 3077 3271 -1 1793 166 41 43 chr4 15002616 15003007 -169285655 + MLT1B LTR MaLR 1 390 0 272 311 50 50 chr4 15004251 15004370 -169284292 + MIR SINE MIR 70 188 -74 1478 296 105 13 chr4 15004418 15005025 -169283637 + L2 LINE L2 1986 2648 -666 21 82 0 0 chr4 15005094 15005143 -169283519 + AT_rich Low_complexity Low_complexity 1 49 0 197 329 96 0 chr4 15005304 15005377 -169283285 + L3 LINE CR1 180 259 -1318 33 25 0 0 chr4 15005537 15005577 -169283085 + AT_rich Low_complexity Low_complexity 1 40 0 348 217 43 11 chr4 15005584 15005676 -169282986 - L1MC4 LINE L1 -1339 6703 6609 57 0 0 0 chr4 15005678 15005735 -169282927 + AT_rich Low_complexity Low_complexity 1 57 0 503 336 75 50 chr4 15005844 15006353 -169282309 + L2 LINE L2 2699 3225 -88 1559 237 100 21 chr4 15006406 15006874 -169281788 - MLT1E2 LTR MaLR -11 615 111 859 86 31 99 chr4 15006918 15006967 -169281695 - MLT2A2 LTR ERVL 0 453 402 1895 155 4 0 chr4 15006967 15007298 -169281364 - AluSx SINE Alu 0 335 4 859 86 31 99 chr4 15007298 15007409 -169281253 - MLT2A2 LTR ERVL -51 402 303 293 224 165 12 chr4 15007518 15007603 -169281059 + MLT1E2 LTR MaLR 111 208 -418 243 169 52 7 chr4 15007739 15007893 -169280769 + (TA)n Simple_repeat Simple_repeat 1 161 0 756 255 48 5 chr4 15008160 15008348 -169280314 + MIR SINE MIR 57 252 -10 1155 287 54 52 chr4 15008516 15008979 -169279683 - LTR16B LTR ERVL 0 464 1 1684 132 148 28 chr4 15010227 15010552 -169278110 - THE1B LTR MaLR 0 364 1 264 273 151 0 chr4 15010583 15010722 -169277940 + MIR SINE MIR 71 230 -32 341 349 62 22 chr4 15010837 15011265 -169277397 + L1MC/D LINE L1 5122 5567 -611 301 309 74 40 chr4 15011932 15012081 -169276581 + L1MC/D LINE L1 5523 5676 -2132 204 313 141 0 chr4 15012092 15012220 -169276442 - L2 LINE L2 0 3313 3168 267 287 98 41 chr4 15013440 15013562 -169275100 + MIR SINE MIR 26 154 -108 1751 195 18 3 chr4 15013642 15014031 -169274631 - L1MC/D LINE L1 -569 6184 5790 1345 246 19 12 chr4 15014034 15014465 -169274197 - L1MC/D LINE L1 -859 5681 5248 1239 215 60 1 chr4 15014449 15014871 -169273791 + L1 LINE L1 4855 5323 -823 * 3147 239 27 67 chr4 15014882 15016297 -169272365 - L1MC/D LINE L1 -1286 5254 3897 1646 143 140 19 chr4 15016298 15016662 -169272000 - MSTA LTR MaLR 0 428 21 2175 234 76 6 chr4 15016679 15017468 -169271194 - L1MC/D LINE L1 -2654 3886 3043 4187 191 59 141 chr4 15017581 15018941 -169269721 - L1MC/D LINE L1 -5010 1530 328 219 36 0 0 chr4 15018941 15018969 -169269693 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 4187 191 59 141 chr4 15018969 15019256 -169269406 - L1MC/D LINE L1 -6212 328 19 238 286 71 0 chr4 15020012 15020068 -169268594 - L2 LINE L2 -10 3262 3203 213 323 77 31 chr4 15020179 15020309 -169268353 - MIR SINE MIR -50 212 77 1606 56 0 0 chr4 15020738 15020936 -169267726 - L1PA7 LINE L1 -11 6143 5946 310 246 66 74 chr4 15020937 15021059 -169267603 + MIR SINE MIR 122 242 -20 187 333 0 0 chr4 15021108 15021162 -169267500 + L2 LINE L2 3219 3272 0 312 267 38 19 chr4 15021254 15021359 -169267303 - L1MC4 LINE L1 -1322 6720 6614 413 365 80 46 chr4 15022089 15022500 -169266162 + L2 LINE L2 2548 2972 -342 1190 330 139 13 chr4 15022752 15023718 -169264944 - L2 LINE L2 -4 3309 2214 32 75 0 0 chr4 15024047 15024114 -169264548 + AT_rich Low_complexity Low_complexity 1 67 0 564 233 83 22 chr4 15024297 15024477 -169264185 + MIR SINE MIR 65 255 -7 594 156 24 180 chr4 15024482 15024629 -169264033 + MER5B DNA MER1_type 1 107 -71 1845 171 3 3 chr4 15024629 15024938 -169263724 + AluJb SINE Alu 1 309 -3 594 156 24 180 chr4 15024938 15025001 -169263661 + MER5B DNA MER1_type 107 178 0 444 294 192 0 chr4 15025187 15025364 -169263298 + MIR SINE MIR 31 241 -21 4125 101 28 2 chr4 15025394 15026008 -169262654 + L1PA13 LINE L1 5534 6163 0 311 342 26 48 chr4 15026415 15026684 -169261978 + L2 LINE L2 2821 3083 -189 2091 81 50 3 chr4 15026731 15027014 -169261648 + AluY SINE Alu 1 296 -15 189 107 0 0 chr4 15027048 15027076 -169261586 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 659 194 0 28 chr4 15027438 15027582 -169261080 + AluJb SINE Alu 172 311 -1 485 299 221 5 chr4 15027700 15027904 -169260758 + MIR SINE MIR 8 255 -7 25 51 0 0 chr4 15027906 15027945 -169260717 + AT_rich Low_complexity Low_complexity 1 39 0 233 289 74 66 chr4 15029032 15029153 -169259509 + MIR SINE MIR 63 184 -78 674 268 103 19 chr4 15029226 15029439 -169259223 + MIR SINE MIR 6 236 -26 234 129 48 32 chr4 15030421 15030483 -169258179 - MER116 DNA Mariner -1 79 17 258 256 12 23 chr4 15030568 15030654 -169258008 + L2 LINE L2 3180 3264 -8 516 192 151 16 chr4 15031144 15031389 -169257273 - Charlie2 DNA MER1_type -73 2789 2512 761 222 126 44 chr4 15031403 15031573 -169257089 - Charlie2a DNA MER1_type -1222 1640 1485 2143 136 0 0 chr4 15031573 15031875 -169256787 + AluSx SINE Alu 1 302 -10 761 222 126 44 chr4 15031875 15032046 -169256616 - Charlie2a DNA MER1_type -1377 1485 1271 2976 234 77 9 chr4 15032099 15033210 -169255452 + L1M4 LINE L1 2168 3353 -2793 618 160 11 0 chr4 15033216 15033310 -169255352 + AluJ/FLAM SINE Alu 5 99 -213 29 47 0 0 chr4 15033310 15033353 -169255309 + AT_rich Low_complexity Low_complexity 1 43 0 1456 242 56 14 chr4 15033353 15033906 -169254756 + L1M4 LINE L1 3342 3917 -2229 445 171 0 0 chr4 15033920 15034025 -169254637 + Charlie5 DNA MER1_type 2451 2555 -57 1265 184 98 34 chr4 15034030 15034296 -169254366 + AluJo SINE Alu 12 294 -18 267 99 0 183 chr4 15034296 15034367 -169254295 + Charlie5 DNA MER1_type 2521 2578 -34 297 302 99 20 chr4 15034906 15035137 -169253525 - MIR3 SINE MIR -18 244 3 502 123 98 0 chr4 15036038 15036160 -169252502 - L1MA7 LINE L1 0 6291 6158 2138 164 10 5 chr4 15036163 15036565 -169252097 - L1MA7 LINE L1 -249 6042 5639 193 287 149 32 chr4 15036677 15036771 -169251891 + MIR SINE MIR 25 129 -79 401 336 58 0 chr4 15037088 15037225 -169251437 + L2 LINE L2 3169 3313 0 254 192 41 27 chr4 15037772 15037845 -169250817 + CT-rich Low_complexity Low_complexity 4 77 0 182 274 81 0 chr4 15037870 15037932 -169250730 - L2 LINE L2 -10 3262 3196 706 338 76 23 chr4 15037993 15038464 -169250198 - L2 LINE L2 -815 2499 2004 1381 262 133 45 chr4 15039070 15039769 -169248893 - L2 LINE L2 -24 3289 2497 13261 113 49 74 chr4 15039769 15041145 -169247517 + Tigger1 DNA MER2_type 2 1290 -1128 1824 134 0 0 chr4 15041145 15041406 -169247256 - AluSx SINE Alu -25 287 27 13261 113 49 74 chr4 15041406 15042506 -169246156 + Tigger1 DNA MER2_type 1290 2416 -2 1381 262 133 45 chr4 15042506 15042735 -169245927 - L2 LINE L2 -816 2497 2290 1188 227 74 65 chr4 15042740 15043198 -169245464 - L2 LINE L2 -1555 1759 1298 25 0 0 0 chr4 15044572 15044597 -169244065 + AT_rich Low_complexity Low_complexity 1 25 0 204 135 0 0 chr4 15046057 15046094 -169242568 + (CGG)n Simple_repeat Simple_repeat 2 38 0 26 30 0 0 chr4 15046472 15046505 -169242157 + GC_rich Low_complexity Low_complexity 1 33 0 395 279 117 113 chr4 15046515 15046705 -169241957 + L1M2 LINE L1 525 713 -6136 183 42 0 0 chr4 15046705 15046729 -169241933 + (TCC)n Simple_repeat Simple_repeat 3 26 0 395 279 117 113 chr4 15046729 15047336 -169241326 + L1M2 LINE L1 713 1325 -5524 302 325 114 72 chr4 15047312 15047909 -169240753 - L1M2 LINE L1 -5479 1370 749 * 192 283 174 22 chr4 15048869 15048961 -169239701 - MIR3 SINE MIR -13 195 90 25 31 0 0 chr4 15053499 15053531 -169235131 + AT_rich Low_complexity Low_complexity 1 32 0 2174 111 10 0 chr4 15053626 15053933 -169234729 - AluSx SINE Alu -2 310 1 397 130 10 110 chr4 15054079 15054179 -169234483 + FLAM_A SINE Alu 34 123 -10 250 300 25 25 chr4 15057525 15057605 -169231057 - MIR3 SINE MIR -31 177 98 963 174 62 17 chr4 15057622 15057800 -169230862 + MER5A DNA MER1_type 4 189 0 1387 140 164 7 chr4 15058249 15058542 -169230120 - MER44D DNA MER2_type 0 609 1 22 35 0 0 chr4 15059821 15059850 -169228812 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr4 15060438 15060466 -169228196 + AT_rich Low_complexity Low_complexity 1 28 0 787 164 0 41 chr4 15060527 15060673 -169227989 - MLT1F1 LTR MaLR -2 565 426 229 93 0 0 chr4 15061470 15061513 -169227149 - LTR66 LTR ERVL -174 436 394 295 183 17 0 chr4 15111576 15111636 -169177026 + MER112 DNA MER1_type 199 259 -1 1032 214 14 20 chr4 15111746 15112097 -169176565 - L1MA9 LINE L1 -14 6298 5854 21 71 0 0 chr4 15112493 15112535 -169176127 + AT_rich Low_complexity Low_complexity 1 42 0 2649 53 0 0 chr4 15112786 15113089 -169175573 - AluY SINE Alu -8 303 1 1371 212 48 8 chr4 15113187 15113541 -169175121 - L1MB8 LINE L1 0 6178 5811 457 284 31 0 chr4 15113948 15114075 -169174587 - MIR SINE MIR -13 249 119 1163 170 29 119 chr4 15114198 15114348 -169174314 + MLT1A1 LTR MaLR 1 163 -212 2272 94 0 28 chr4 15114348 15114668 -169173994 + AluSq SINE Alu 1 311 -2 1163 170 29 119 chr4 15114668 15114912 -169173750 + MLT1A1 LTR MaLR 163 367 -8 220 196 43 0 chr4 15115869 15115915 -169172747 + MIR SINE MIR 205 252 -10 233 240 108 62 chr4 15115946 15116075 -169172587 - L2 LINE L2 -40 3273 3139 1661 133 97 31 chr4 15116411 15116763 -169171899 - THE1C LTR MaLR 0 375 1 2054 84 22 16 chr4 15116772 15117092 -169171570 - THE1C-int LTR MaLR -8 1572 1251 2070 101 7 151 chr4 15117106 15117570 -169171092 - THE1C-int LTR MaLR -1183 397 1 1995 119 61 25 chr4 15117570 15117932 -169170730 - THE1C LTR MaLR 0 375 1 928 320 65 48 chr4 15117935 15118582 -169170080 - L2 LINE L2 -1008 2306 1649 1778 163 35 0 chr4 15118883 15119171 -169169491 + AluSx SINE Alu 1 298 -14 635 295 37 25 chr4 15119207 15119448 -169169214 - MIR SINE MIR 0 262 19 4808 7 20 0 chr4 15119750 15120301 -169168361 - L1PA2 LINE L1 -3 6152 5591 2743 124 7 0 chr4 15122347 15122767 -169165895 - MSTA LTR MaLR 0 428 6 656 181 77 0 chr4 15122789 15122944 -169165718 - MER58A DNA MER1_type 0 167 1 1214 93 12 0 chr4 15123058 15123219 -169165443 - AluSq SINE Alu -150 163 1 224 273 106 70 chr4 15123219 15123446 -169165216 + L2 LINE L2 2997 3231 -41 2354 255 91 13 chr4 15123964 15124832 -169163830 - L1ME3A LINE L1 -8 6162 5230 470 341 36 0 chr4 15125013 15125180 -169163482 - MIR3 SINE MIR -27 181 9 241 206 96 27 chr4 15126032 15126105 -169162557 - MER116 DNA Mariner 0 80 3 552 245 185 28 chr4 15126190 15126406 -169162256 - MIR SINE MIR -2 260 11 203 312 43 32 chr4 15126927 15127020 -169161642 - L2 LINE L2 -18 3295 3202 444 261 8 42 chr4 15127695 15127814 -169160848 - MIR SINE MIR -79 183 69 2449 62 3 0 chr4 15127877 15128168 -169160494 - AluSp SINE Alu -21 292 1 247 229 0 0 chr4 15128295 15128343 -169160319 + MIR SINE MIR 4 51 -211 537 289 55 12 chr4 15128378 15128634 -169160028 + LTR16C LTR ERVL 151 417 -74 978 281 70 7 chr4 15128641 15129068 -169159594 - LTR16B LTR ERVL 0 464 11 244 213 0 0 chr4 15130081 15130128 -169158534 - MIR SINE MIR -119 143 97 252 197 30 0 chr4 15130135 15130201 -169158461 + MER53 DNA DNA 1 68 -121 2232 112 0 3 chr4 15131830 15132125 -169156537 - AluSq SINE Alu -19 294 1 210 303 0 40 chr4 15132330 15132429 -169156233 + CT-rich Low_complexity Low_complexity 4 98 0 212 284 64 18 chr4 15132684 15132793 -169155869 + MIR SINE MIR 91 204 -58 230 268 46 77 chr4 15132956 15133150 -169155512 - L1MC4 LINE L1 -18 8024 7837 272 239 14 0 chr4 15133381 15133452 -169155210 + MER103 DNA DNA 31 102 -64 2262 120 53 6 chr4 15134915 15135273 -169153389 + THE1C LTR MaLR 1 375 0 3284 134 112 5 chr4 15135273 15135878 -169152784 + THE1C-int LTR MaLR 1 670 -910 271 341 81 23 chr4 15136549 15136722 -169151940 + MIR SINE MIR 23 205 -57 588 289 122 35 chr4 15138187 15138557 -169150105 - MLT1J2 LTR MaLR -16 434 33 261 279 16 0 chr4 15138712 15138773 -169149889 + MIR3 SINE MIR 127 188 -20 316 222 11 67 chr4 15139059 15139149 -169149513 + MIR3 SINE MIR 113 197 -11 1151 112 6 0 chr4 15139624 15139793 -169148869 - L1PA8 LINE L1 -14 6158 5989 381 278 108 57 chr4 15139793 15139960 -169148702 - MIR SINE MIR -72 190 12 505 288 98 74 chr4 15140177 15140597 -169148065 - MLT1J2 LTR MaLR 0 450 21 214 209 12 18 chr4 15140601 15140707 -169147955 + MIR SINE MIR 102 262 0 188 329 89 8 chr4 15141270 15141449 -169147213 + L2 LINE L2 2848 3049 -223 39 68 0 0 chr4 15141747 15141821 -169146841 + AT_rich Low_complexity Low_complexity 1 74 0 623 338 41 0 chr4 15142327 15142620 -169146042 + LTR16A LTR ERVL 96 400 -50 548 273 89 35 chr4 15142683 15142965 -169145697 + MLT1L LTR MaLR 301 597 -18 378 274 21 0 chr4 15143262 15143357 -169145305 + LTR33 LTR ERVL 6 102 -419 1266 242 63 13 chr4 15143497 15143894 -169144768 + Charlie4a DNA MER1_type 2 418 -90 25 31 0 0 chr4 15143894 15143926 -169144736 + AT_rich Low_complexity Low_complexity 1 32 0 4205 25 0 0 chr4 15143926 15144415 -169144247 - L1PA3 LINE L1 0 6155 5667 2293 57 3 33 chr4 15145191 15145491 -169143171 + AluY SINE Alu 3 293 -18 2175 105 3 0 chr4 15146751 15147046 -169141616 - AluSx SINE Alu -6 306 11 2288 94 0 0 chr4 15149574 15149861 -169138801 - AluSp SINE Alu -16 297 11 27 49 0 0 chr4 15151858 15151899 -169136763 + AT_rich Low_complexity Low_complexity 1 41 0 803 206 55 41 chr4 15152324 15152543 -169136119 + MER58A DNA MER1_type 1 222 -2 191 188 21 0 chr4 15153540 15153588 -169135074 + (TA)n Simple_repeat Simple_repeat 2 50 0 23 78 0 0 chr4 15153978 15154029 -169134633 + AT_rich Low_complexity Low_complexity 1 51 0 1563 246 105 37 chr4 15154097 15154397 -169134265 - L1ME3 LINE L1 -328 5834 5556 2200 98 0 14 chr4 15154397 15154694 -169133968 - AluSq SINE Alu -20 293 1 1563 246 105 37 chr4 15154694 15156741 -169131921 - L1ME3 LINE L1 -606 5556 3296 528 258 26 5 chr4 15156747 15156941 -169131721 - L1ME3 LINE L1 -3016 3130 2933 2125 121 29 13 chr4 15158266 15158573 -169130089 + MER1B DNA MER1_type 28 339 0 2251 110 0 0 chr4 15161175 15161485 -169127177 - AluY SINE Alu -1 310 1 279 319 202 42 chr4 15163692 15164028 -169124634 + L2 LINE L2 2585 2974 -340 22 35 0 0 chr4 15165160 15165189 -169123473 + AT_rich Low_complexity Low_complexity 1 29 0 304 255 261 27 chr4 15166201 15166385 -169122277 + MIR SINE MIR 20 246 -16 2198 150 3 12 chr4 15166847 15167187 -169121475 + MER1B DNA MER1_type 1 337 -2 817 289 172 32 chr4 15168208 15168883 -169119779 - L2 LINE L2 -231 3041 2283 2837 265 138 25 chr4 15168914 15170063 -169118599 - L2 LINE L2 -597 2717 1440 577 259 174 19 chr4 15170710 15170922 -169117740 + MIR SINE MIR 18 262 0 22 56 0 0 chr4 15171171 15171207 -169117455 + AT_rich Low_complexity Low_complexity 1 36 0 409 204 43 0 chr4 15171636 15171729 -169116933 - MER5B DNA MER1_type -2 176 80 200 253 12 108 chr4 15171664 15171747 -169116915 + MER5A DNA MER1_type 44 118 -71 * 316 383 8 8 chr4 15172806 15172926 -169115736 - L2 LINE L2 -7 3265 3146 377 308 104 22 chr4 15173091 15173273 -169115389 + L1MB3 LINE L1 5270 5466 -2342 349 254 52 30 chr4 15173287 15173421 -169115241 - L1MC/D LINE L1 -2056 5752 5616 421 215 125 35 chr4 15173603 15173747 -169114915 - MIR SINE MIR 0 262 106 22 0 0 0 chr4 15176866 15176888 -169111774 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr4 15178251 15178288 -169110374 + AT_rich Low_complexity Low_complexity 1 37 0 260 243 19 93 chr4 15179635 15179742 -169108920 + HAL1 LINE L1 1657 1755 -752 25 83 0 0 chr4 15180005 15180065 -169108597 + AT_rich Low_complexity Low_complexity 1 60 0 266 229 121 84 chr4 15180065 15180314 -169108348 - HAL1 LINE L1 -39 2468 2211 271 191 36 24 chr4 15180318 15180402 -169108260 + L1ME3A LINE L1 6081 6165 -5 2418 142 49 12 chr4 15180646 15181077 -169107585 + L1MB3 LINE L1 5663 6109 -74 199 348 186 19 chr4 15181245 15181455 -169107207 - L2 LINE L2 -221 3051 2807 403 208 0 33 chr4 15182141 15182240 -169106422 + MLT1I LTR MaLR 319 407 -2 390 265 45 45 chr4 15182350 15182482 -169106180 - MER5B DNA MER1_type -46 132 1 277 354 53 0 chr4 15182764 15182877 -169105785 + MIR SINE MIR 141 259 -3 3976 247 118 30 chr4 15182981 15186198 -169102464 + L1MB1 LINE L1 249 3314 -2656 1364 101 43 47 chr4 15186283 15186540 -169102122 - L1PA13 LINE L1 -2 6161 5906 589 172 33 33 chr4 15186663 15186785 -169101877 + L1MB1 LINE L1 3390 3511 -2459 1996 154 61 11 chr4 15186785 15187153 -169101509 + L1MB1 LINE L1 5593 5987 -5 1965 239 76 39 chr4 15187282 15187873 -169100789 - MLT1E3 LTR MaLR 0 624 12 206 215 0 15 chr4 15188106 15188171 -169100491 + T-rich Low_complexity Low_complexity 2 65 0 223 316 60 45 chr4 15188270 15188403 -169100259 - MIR3 SINE MIR -64 144 10 615 308 114 52 chr4 15188673 15189076 -169099586 + L2 LINE L2 2885 3312 -1 1309 116 34 29 chr4 15189342 15189549 -169099113 - AluSg/x SINE Alu -12 300 93 2523 51 3 6 chr4 15189919 15190231 -169098431 - AluY SINE Alu 0 311 1 190 214 0 24 chr4 15190606 15190648 -169098014 - MIR SINE MIR -25 237 197 498 281 69 64 chr4 15190708 15190911 -169097751 - MIR SINE MIR -56 206 3 263 293 52 20 chr4 15190911 15191026 -169097636 - MIR SINE MIR -85 123 20 503 288 62 0 chr4 15191112 15191272 -169097390 - MIR SINE MIR -9 253 84 280 274 140 45 chr4 15191788 15191912 -169096750 - MIR SINE MIR -3 259 111 2184 130 0 6 chr4 15191912 15192227 -169096435 + AluSq SINE Alu 1 313 0 280 274 140 45 chr4 15192227 15192281 -169096381 - MIR SINE MIR -151 111 64 180 279 33 0 chr4 15192364 15192425 -169096237 - L2 LINE L2 0 3272 3210 3794 181 9 12 chr4 15192658 15193403 -169095259 - L1MD1 LINE L1 0 6242 5500 1968 97 10 1 chr4 15193408 15193717 -169094945 - THE1A LTR MaLR 0 355 1 10901 102 25 7 chr4 15193717 15195269 -169093393 - THE1A-int LTR MaLR 0 1580 2 2538 102 6 0 chr4 15195270 15195623 -169093039 - THE1A LTR MaLR 0 355 1 6996 219 29 83 chr4 15195623 15196729 -169091933 - L1MD1 LINE L1 -743 5403 4239 363 35 0 70 chr4 15196729 15196786 -169091876 - MADE1 DNA Mariner -27 53 1 6996 219 29 83 chr4 15196786 15197481 -169091181 - L1MD1 LINE L1 -1907 4239 3508 2251 86 3 3 chr4 15197481 15197782 -169090880 - AluSc SINE Alu -8 301 1 6996 219 29 83 chr4 15197782 15198879 -169089783 - L1MD1 LINE L1 -2638 3508 2693 1873 276 101 11 chr4 15199396 15200770 -169087892 - L1ME3A LINE L1 -234 5919 4430 862 280 150 59 chr4 15200874 15201031 -169087631 - L1ME3A LINE L1 -1915 4214 4073 1614 170 71 113 chr4 15201031 15201508 -169087154 - MSTB2 LTR MaLR 0 457 1 862 280 150 59 chr4 15201508 15201528 -169087134 - L1ME3A LINE L1 -2056 4073 4056 1936 114 53 4 chr4 15201528 15201809 -169086853 - AluSg SINE Alu -15 295 1 862 280 150 59 chr4 15201809 15201932 -169086730 - L1ME3A LINE L1 -2073 4056 3946 843 106 4 186 chr4 15201932 15202168 -169086494 - 7SK RNA RNA 0 193 1 862 280 150 59 chr4 15202168 15202548 -169086114 - L1ME3A LINE L1 -2183 3946 3602 1786 159 3 29 chr4 15202548 15202857 -169085805 - AluSx SINE Alu -11 301 1 862 280 150 59 chr4 15202857 15203067 -169085595 - L1ME3A LINE L1 -2527 3602 3240 754 143 55 106 chr4 15203070 15203220 -169085442 + MLT1B LTR MaLR 1 126 -248 2330 102 7 0 chr4 15203220 15203525 -169085137 - AluSp SINE Alu -6 307 1 754 143 55 106 chr4 15203525 15203610 -169085052 + MLT1B LTR MaLR 126 214 -160 324 287 48 0 chr4 15203610 15203777 -169084885 - L1M4 LINE L1 -1704 4442 4268 888 202 28 0 chr4 15203777 15203955 -169084707 + MLT1B LTR MaLR 208 390 0 1066 323 32 16 chr4 15203961 15203989 -169084673 - L1ME3A LINE L1 -2886 3243 3217 21 0 0 0 chr4 15203989 15204010 -169084652 + AT_rich Low_complexity Low_complexity 1 21 0 1066 323 32 16 chr4 15204010 15204640 -169084022 - L1ME3A LINE L1 -2912 3217 2554 415 351 33 47 chr4 15204641 15204875 -169083787 - L1ME3A LINE L1 -5205 914 685 1727 175 114 3 chr4 15204875 15205200 -169083462 + MLT1A1 LTR MaLR 1 361 -4 415 351 33 47 chr4 15205200 15205324 -169083338 - L1ME3A LINE L1 -5434 685 561 2067 127 10 0 chr4 15205559 15205858 -169082804 - AluSx SINE Alu -10 302 1 23 0 0 0 chr4 15205910 15205933 -169082729 + AT_rich Low_complexity Low_complexity 1 23 0 382 267 109 36 chr4 15205999 15206246 -169082416 - L1MEd LINE L1 -4880 1239 975 1067 187 15 20 chr4 15206257 15206455 -169082207 + L1MB1 LINE L1 5967 6163 -5 342 173 4 22 chr4 15206583 15206678 -169081984 - MLT1E3 LTR MaLR 0 624 503 2012 189 72 25 chr4 15206774 15207130 -169081532 + L1MC3 LINE L1 7276 7663 -122 2561 116 31 6 chr4 15207130 15207483 -169081179 + THE1B LTR MaLR 3 364 0 2012 189 72 25 chr4 15207483 15207612 -169081050 + L1MC3 LINE L1 7663 7784 -1 313 253 55 44 chr4 15208087 15208178 -169080484 - LTR33 LTR ERVL -241 280 189 373 336 50 42 chr4 15208445 15208683 -169079979 + LTR16C LTR ERVL 242 481 -10 198 276 17 35 chr4 15209892 15209950 -169078712 + MIR SINE MIR 29 77 -131 416 312 7 22 chr4 15209976 15210114 -169078548 - MIR SINE MIR -83 179 44 252 122 24 0 chr4 15210266 15210307 -169078355 + MLT2B2 LTR ERVL 474 515 0 603 281 143 30 chr4 15210501 15210971 -169077691 - L1ME4a LINE L1 -204 5917 5395 412 294 134 62 chr4 15211333 15211379 -169077283 - MLT1L LTR MaLR -12 603 562 3044 71 6 11 chr4 15211379 15211745 -169076917 + THE1B LTR MaLR 1 364 0 412 294 134 62 chr4 15211745 15212168 -169076494 - MLT1L LTR MaLR -53 562 100 567 251 48 16 chr4 15212329 15212516 -169076146 - MER69 DNA AcHobo -17 2509 2317 1060 239 126 25 chr4 15212535 15212861 -169075801 - MER69 DNA AcHobo -1404 1122 764 * 2141 241 27 49 chr4 15212854 15213485 -169075177 - MLT1E3 LTR MaLR -5 619 3 748 223 202 4 chr4 15213488 15213721 -169074941 - MER69 DNA AcHobo -1747 779 501 433 283 175 7 chr4 15213825 15214111 -169074551 + MER46C DNA MER2_type 2 335 -3 1717 263 53 76 chr4 15214207 15214946 -169073716 - MER21B LTR ERV1 -125 738 17 246 275 74 44 chr4 15215226 15215455 -169073207 - L1ME4a LINE L1 -1712 4434 4199 980 149 98 102 chr4 15215471 15215837 -169072825 - MER4A LTR ERV1 0 465 90 2386 88 3 0 chr4 15215837 15216131 -169072531 + AluSp SINE Alu 1 295 -18 980 149 98 102 chr4 15216131 15216221 -169072441 - MER4A LTR ERV1 -375 90 1 325 380 62 4 chr4 15216232 15216458 -169072204 - L1ME4a LINE L1 -1982 4164 3926 22 35 0 0 chr4 15216477 15216506 -169072156 + AT_rich Low_complexity Low_complexity 1 29 0 978 184 34 0 chr4 15216878 15217057 -169071605 + MER58A DNA MER1_type 40 224 0 1620 145 79 41 chr4 15217196 15217513 -169071149 - Tigger2a DNA MER2_type -105 329 1 216 284 171 11 chr4 15217660 15217748 -169070914 + MIR SINE MIR 12 113 -149 208 295 158 0 chr4 15218411 15218506 -169070156 + MIR SINE MIR 4 113 -149 442 310 99 25 chr4 15220085 15220327 -169068335 - MIR SINE MIR 0 262 3 233 279 96 0 chr4 15220356 15220460 -169068202 + L1ME4a LINE L1 5938 6051 -70 7974 27 3 0 chr4 15220469 15222111 -169066551 - L1PA3 LINE L1 -1 6154 4499 7661 26 1 0 chr4 15222111 15223000 -169065662 + L1PA3 LINE L1 3621 4510 -1636 240 35 0 0 chr4 15223049 15223078 -169065584 + (CA)n Simple_repeat Simple_repeat 1 29 0 229 286 294 47 chr4 15223083 15223572 -169065090 + L2 LINE L2 2368 2977 -337 525 191 0 0 chr4 15223605 15223710 -169064952 + CT-rich Low_complexity Low_complexity 4 108 0 915 173 0 65 chr4 15223712 15223897 -169064765 - FRAM SINE Alu -4 172 1 191 284 45 30 chr4 15223904 15223971 -169064691 + L2 LINE L2 3005 3072 -241 328 140 0 18 chr4 15224025 15224082 -169064580 + MLT2B1 LTR ERVL 1 56 -464 2402 152 102 78 chr4 15224225 15224311 -169064351 - MLT2B2 LTR ERVL -3 512 430 459 0 0 0 chr4 15224311 15224362 -169064300 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 2402 152 102 78 chr4 15224362 15224775 -169063887 - MLT2B2 LTR ERVL -85 430 1 220 185 37 37 chr4 15224822 15224876 -169063786 + L2 LINE L2 3244 3297 -16 1682 255 53 7 chr4 15224895 15225327 -169063335 - MER97c DNA MER1_type? -638 452 1 244 266 38 25 chr4 15225396 15225475 -169063187 + MIR SINE MIR 113 192 -70 292 342 25 17 chr4 15225873 15225993 -169062669 + MIR3 SINE MIR 1 121 -87 206 231 15 0 chr4 15226140 15226205 -169062457 + GA-rich Low_complexity Low_complexity 2 67 0 343 213 80 0 chr4 15226768 15226843 -169061819 + MIR SINE MIR 50 130 -78 1538 242 105 45 chr4 15226876 15227437 -169061225 - MLT1G1 LTR MaLR 0 595 1 8837 68 11 8 chr4 15227946 15229013 -169059649 + MER11C LTR ERVK 1 1071 0 1345 248 123 23 chr4 15229025 15229065 -169059597 - MLT1E2 LTR MaLR -2 624 589 2847 86 11 3 chr4 15229065 15229439 -169059223 + L1PA13 LINE L1 5782 6158 -5 1345 248 123 23 chr4 15229439 15229958 -169058704 - MLT1E2 LTR MaLR -37 589 1 2928 81 44 20 chr4 15230767 15231176 -169057486 - L1MA1 LINE L1 0 6302 5884 251 322 73 10 chr4 15231249 15231454 -169057208 + L1MEc LINE L1 2291 2508 -3888 742 304 63 18 chr4 15231576 15232067 -169056595 + L1MEc LINE L1 2380 2892 -3323 498 273 19 20 chr4 15232624 15232867 -169055795 - L1M4 LINE L1 -1091 5055 4811 486 290 73 33 chr4 15232887 15233190 -169055472 + HAL1 LINE L1 2193 2507 0 211 238 62 62 chr4 15233561 15233641 -169055021 + L2 LINE L2 3192 3271 -1 186 336 29 29 chr4 15233922 15234026 -169054636 - L2 LINE L2 0 3313 3210 832 239 92 16 chr4 15234282 15234533 -169054129 + MLT1C LTR MaLR 6 275 -192 2083 136 0 3 chr4 15234534 15234889 -169053773 + AluSx SINE Alu 1 354 0 822 215 56 26 chr4 15234889 15234935 -169053727 + MLT1C LTR MaLR 260 303 -164 1563 166 56 125 chr4 15234935 15235327 -169053335 + MLT1A1 LTR MaLR 1 365 0 822 215 56 26 chr4 15235327 15235475 -169053187 + MLT1C LTR MaLR 303 460 -7 2083 130 17 0 chr4 15235475 15235775 -169052887 - AluSx SINE Alu -7 305 1 2064 148 35 27 chr4 15236293 15236665 -169051997 - THE1C LTR MaLR 0 375 1 1993 166 61 9 chr4 15236665 15237009 -169051653 + MLT1A1 LTR MaLR 3 364 -1 308 271 0 24 chr4 15237177 15237262 -169051400 + (CATA)n Simple_repeat Simple_repeat 4 86 0 * 321 348 0 28 chr4 15237203 15237384 -169051278 + (CATATA)n Simple_repeat Simple_repeat 4 179 0 199 241 155 0 chr4 15237548 15237606 -169051056 - MIR SINE MIR -117 145 79 625 275 69 103 chr4 15237631 15237708 -169050954 + L2 LINE L2 2164 2242 -1072 2368 79 3 10 chr4 15237708 15238012 -169050650 - AluY SINE Alu -9 302 1 625 275 69 103 chr4 15238012 15238440 -169050222 + L2 LINE L2 2242 2652 -662 511 325 67 57 chr4 15239689 15239718 -169048944 - L1ME4a LINE L1 -58 6063 6036 958 217 51 118 chr4 15239718 15240109 -169048553 + MLT1A1 LTR MaLR 1 365 0 511 325 67 57 chr4 15240109 15240860 -169047802 - L1ME4a LINE L1 -85 6036 5267 1084 137 0 0 chr4 15241291 15241452 -169047210 - FRAM SINE Alu 0 40 1 479 264 25 8 chr4 15242152 15242273 -169046389 + MLT1K LTR MaLR 166 288 -300 447 289 40 55 chr4 15242906 15243018 -169045644 + MIR SINE MIR 48 160 -102 2390 125 30 28 chr4 15243018 15243379 -169045283 - THE1B LTR MaLR -2 362 1 12367 90 8 16 chr4 15243379 15244972 -169043690 - THE1B-int LTR MaLR 0 1580 1 2445 119 30 22 chr4 15244972 15245333 -169043329 - THE1B LTR MaLR 0 364 1 447 289 40 55 chr4 15245333 15245419 -169043243 + MIR SINE MIR 157 245 -17 342 0 0 0 chr4 15245706 15245744 -169042918 + (TG)n Simple_repeat Simple_repeat 1 38 0 297 0 0 0 chr4 15245743 15245776 -169042886 + (GA)n Simple_repeat Simple_repeat 1 33 0 * 2282 121 159 5 chr4 15246033 15246404 -169042258 + MSTA LTR MaLR 1 428 0 424 315 91 0 chr4 15246995 15247160 -169041502 - MIR SINE MIR -19 243 64 195 349 78 36 chr4 15247290 15247456 -169041206 - L2 LINE L2 -275 3038 2866 617 215 146 19 chr4 15247815 15247973 -169040689 + MLT1D LTR MaLR 328 505 0 319 245 31 109 chr4 15248107 15248299 -169040363 + MER69A DNA AcHobo 1 177 0 2305 166 78 5 chr4 15249224 15249621 -169039041 - MSTB LTR MaLR 0 426 1 2322 82 7 0 chr4 15250102 15250405 -169038257 + AluY SINE Alu 5 309 -2 577 320 150 30 chr4 15250491 15250957 -169037705 - L3 LINE CR1 -89 1488 967 392 278 0 9 chr4 15251376 15251491 -169037171 - L2 LINE L2 -1351 1963 1850 553 294 35 10 chr4 15251886 15252083 -169036579 + MIR3 SINE MIR 1 202 -6 227 308 34 82 chr4 15252994 15253140 -169035522 + MIR SINE MIR 63 201 -61 213 196 0 0 chr4 15253688 15253739 -169034923 + (ATG)n Simple_repeat Simple_repeat 3 53 0 234 264 198 41 chr4 15254915 15255036 -169033626 - MIR SINE MIR -70 192 53 513 303 36 0 chr4 15257588 15257783 -169030879 + MIR SINE MIR 61 262 0 530 274 91 18 chr4 15258395 15258614 -169030048 - MIR SINE MIR -4 258 24 181 355 86 0 chr4 15259096 15259189 -169029473 + L2 LINE L2 3210 3310 -3 955 273 97 24 chr4 15259260 15259630 -169029032 + MLT1I LTR MaLR 5 401 -8 332 219 144 65 chr4 15259832 15260033 -169028629 - MIR SINE MIR -31 231 15 295 240 27 0 chr4 15260938 15261013 -169027649 + CT-rich Low_complexity Low_complexity 2 78 0 370 264 62 3 chr4 15261615 15261728 -169026934 - MIR SINE MIR -85 123 5 259 355 58 24 chr4 15261869 15262061 -169026601 + L2 LINE L2 2458 2665 -649 2479 104 58 67 chr4 15262061 15262493 -169026169 + MSTA LTR MaLR 1 428 0 259 355 58 24 chr4 15262493 15262593 -169026069 + L2 LINE L2 2665 2760 -554 198 0 0 0 chr4 15262696 15262718 -169025944 + (TTTTG)n Simple_repeat Simple_repeat 1 22 0 14529 184 19 6 chr4 15262839 15266703 -169021959 - L1PB1 LINE L1 -1 6866 2949 2119 198 118 4 chr4 15266700 15267210 -169021452 - L1PB1 LINE L1 -5687 1176 609 * 1596 254 55 16 chr4 15267215 15267762 -169020900 - L1PB1 LINE L1 -6292 571 4 2432 87 0 3 chr4 15268235 15268545 -169020117 + AluSc SINE Alu 1 309 0 221 283 0 0 chr4 15268970 15269016 -169019646 - L2 LINE L2 -16 3256 3211 678 111 37 32 chr4 15270695 15270918 -169017744 + GA-rich Low_complexity Low_complexity 1 224 0 360 328 15 0 chr4 15272244 15272378 -169016284 - MIR SINE MIR -3 259 124 657 316 146 21 chr4 15272437 15272580 -169016082 - L2 LINE L2 0 3313 3189 1596 226 59 8 chr4 15272580 15272951 -169015711 + MLT1B LTR MaLR 1 390 0 657 316 146 21 chr4 15272951 15273231 -169015431 - L2 LINE L2 -124 3189 2837 223 210 32 32 chr4 15273220 15273282 -169015380 - MIR SINE MIR -183 79 18 * 564 199 55 14 chr4 15273812 15273958 -169014704 - L1MD2 LINE L1 -13 6346 6195 642 249 63 15 chr4 15273960 15274165 -169014497 - L1MD2 LINE L1 -218 6141 5927 676 138 62 28 chr4 15274171 15274316 -169014346 - L1MDa LINE L1 -4004 2536 2387 565 287 25 0 chr4 15274358 15274515 -169014147 - L1MDa LINE L1 -6379 161 1 321 325 49 38 chr4 15274646 15275037 -169013625 - HAL1b LINE L1 -892 456 62 496 146 22 34 chr4 15275213 15275302 -169013360 - L1MA5A LINE L1 -4 6293 6206 642 193 9 18 chr4 15275308 15275422 -169013240 + FLAM_A SINE Alu 10 122 -20 480 51 51 10 chr4 15275677 15275775 -169012887 + (TA)n Simple_repeat Simple_repeat 2 103 0 191 345 84 34 chr4 15276984 15277103 -169011559 - L2 LINE L2 -162 3110 2986 237 33 0 0 chr4 15277198 15277228 -169011434 + (CA)n Simple_repeat Simple_repeat 2 31 0 28 0 0 0 chr4 15277257 15277285 -169011377 + AT_rich Low_complexity Low_complexity 1 28 0 314 326 65 29 chr4 15278337 15278475 -169010187 - L2 LINE L2 -18 3254 3112 564 353 11 22 chr4 15278548 15278817 -169009845 + L2 LINE L2 2816 3081 -232 1905 124 19 62 chr4 15279132 15279454 -169009208 - AluSx SINE Alu 0 312 5 315 301 154 27 chr4 15280033 15280365 -169008297 - HAL1 LINE L1 -900 1607 1234 22 0 0 0 chr4 15281314 15281336 -169007326 + AT_rich Low_complexity Low_complexity 1 22 0 242 271 0 14 chr4 15281760 15281830 -169006832 - MIR SINE MIR -111 151 83 278 274 117 45 chr4 15281870 15282049 -169006613 - LTR33 LTR ERVL -2 519 328 41161 37 28 2 chr4 15282151 15287153 -169001509 + L1P LINE L1 1 5135 -1011 2220 125 36 31 chr4 15388528 15388887 -168899775 + THE1B LTR MaLR 1 361 -3 366 333 14 7 chr4 15389035 15389182 -168899480 - MER5A DNA MER1_type -4 185 38 316 320 20 13 chr4 15389056 15389206 -168899456 + MER5A DNA MER1_type 38 188 -1 * 343 205 89 36 chr4 15389217 15389329 -168899333 + MIR SINE MIR 73 190 -72 793 341 59 18 chr4 15389359 15389849 -168898813 - L2 LINE L2 0 3313 2804 2600 201 43 18 chr4 15390501 15391108 -168897554 - MER74B LTR ERVL 0 622 1 407 297 65 16 chr4 15391317 15391502 -168897160 - MIR SINE MIR -52 210 17 453 233 80 27 chr4 15392171 15392321 -168896341 - LTR16C LTR ERVL -94 397 240 1937 125 65 40 chr4 15392463 15392816 -168895846 - THE1B LTR MaLR -2 362 1 227 385 39 8 chr4 15393662 15393792 -168894870 - L2 LINE L2 -1 3271 3138 4402 155 8 17 chr4 15394226 15394943 -168893719 - MER50 LTR ERV1 -23 711 1 466 283 82 14 chr4 15394980 15395199 -168893463 + MIR SINE MIR 11 244 -18 398 359 13 35 chr4 15395395 15395626 -168893036 - MIR SINE MIR -6 256 31 420 157 12 24 chr4 15396272 15396355 -168892307 - MLT1I LTR MaLR 0 409 328 2304 253 111 32 chr4 15397529 15398620 -168890042 + HAL1b LINE L1 172 1348 0 1457 237 84 18 chr4 15398876 15399314 -168889348 - MLT1C LTR MaLR 0 467 1 248 227 27 0 chr4 15399645 15399720 -168888942 - L1ME LINE L1 -331 5790 5714 22 0 0 0 chr4 15399758 15399780 -168888882 + AT_rich Low_complexity Low_complexity 1 22 0 242 312 116 35 chr4 15399893 15400066 -168888596 + MIR SINE MIR 32 218 -44 537 256 76 24 chr4 15400599 15400810 -168887852 - MLT1L LTR MaLR 0 615 394 225 331 57 25 chr4 15400863 15401020 -168887642 - MLT1L LTR MaLR -286 329 168 464 296 98 36 chr4 15401264 15401855 -168886807 + L2 LINE L2 2687 3311 -2 294 300 82 18 chr4 15402143 15402313 -168886349 + L1ME4a LINE L1 5660 5840 -281 420 212 42 8 chr4 15402441 15402559 -168886103 + L1ME4a LINE L1 5989 6110 -11 229 310 124 8 chr4 15402894 15403013 -168885649 - MIR SINE MIR -58 150 36 328 191 0 0 chr4 15403178 15403241 -168885421 + L1MD3 LINE L1 7729 7791 -204 930 148 13 0 chr4 15403350 15403522 -168885140 + AluSq SINE Alu 134 307 0 2343 80 3 32 chr4 15403559 15403871 -168884791 + AluSg SINE Alu 1 303 -7 219 227 0 0 chr4 15403876 15403942 -168884720 + (TA)n Simple_repeat Simple_repeat 1 66 0 277 186 0 41 chr4 15404032 15404129 -168884533 + (TATG)n Simple_repeat Simple_repeat 3 95 0 199 307 27 13 chr4 15404319 15404394 -168884268 - MIR SINE MIR -101 107 32 330 63 0 143 chr4 15404396 15404459 -168884203 + MLT1A2 LTR MaLR 4 57 -317 * 651 171 13 26 chr4 15404446 15404576 -168884086 + MLT1A2 LTR MaLR 260 373 -1 267 254 39 82 chr4 15404858 15405004 -168883658 + MER5A DNA MER1_type 4 141 -37 372 306 97 19 chr4 15405249 15405455 -168883207 + MIR SINE MIR 28 249 -13 503 266 91 37 chr4 15405841 15406250 -168882412 - L1ME4a LINE L1 -59 6062 5632 274 139 56 83 chr4 15406706 15406778 -168881884 - MIR SINE MIR -2 260 191 281 305 0 12 chr4 15407125 15407207 -168881455 - MIR SINE MIR -167 95 15 1635 215 77 51 chr4 15407270 15407436 -168881226 - MLT1D LTR MaLR 0 505 345 3312 138 6 21 chr4 15407436 15407971 -168880691 + MER1A DNA MER1_type 1 527 0 1635 215 77 51 chr4 15407971 15408296 -168880366 - MLT1D LTR MaLR -160 345 1 200 314 146 22 chr4 15408466 15408651 -168880011 - MIR SINE MIR -12 250 43 373 262 37 0 chr4 15408845 15408952 -168879710 + L2 LINE L2 3203 3313 0 619 273 56 59 chr4 15411063 15411210 -168877452 - L1ME4a LINE L1 -32 6089 5943 755 139 9 0 chr4 15411210 15411325 -168877337 - FLAM_C SINE Alu -14 119 4 619 273 56 59 chr4 15411325 15411753 -168876909 - L1ME4a LINE L1 -178 5943 5516 307 296 12 0 chr4 15411830 15411911 -168876751 - L2 LINE L2 0 3313 3232 230 372 64 11 chr4 15411906 15412094 -168876568 + MIR SINE MIR 22 219 -43 * 24 32 0 0 chr4 15412598 15412629 -168876033 + AT_rich Low_complexity Low_complexity 1 31 0 1268 216 11 0 chr4 15412723 15412996 -168875666 - L1MB5 LINE L1 0 6174 5899 433 116 14 0 chr4 15412996 15413065 -168875597 - MSTA LTR MaLR 0 426 357 1161 201 193 4 chr4 15413067 15413321 -168875341 + AluJo SINE Alu 1 302 -10 1327 143 179 4 chr4 15413321 15413594 -168875068 - MSTA LTR MaLR -64 364 44 528 322 111 5 chr4 15413691 15414189 -168874473 + L2 LINE L2 2530 3082 -190 407 261 67 22 chr4 15414302 15414436 -168874226 + MIR SINE MIR 86 225 -37 261 288 0 0 chr4 15414572 15414631 -168874031 + L3 LINE CR1 1519 1577 0 1036 257 66 28 chr4 15414707 15415178 -168873484 + L1ME4a LINE L1 5540 6028 -93 228 163 0 0 chr4 15415364 15415407 -168873255 + (CA)n Simple_repeat Simple_repeat 1 43 0 203 360 87 29 chr4 15415518 15415760 -168872902 + L2 LINE L2 2642 2897 -417 282 280 16 127 chr4 15416129 15416318 -168872344 - MIR SINE MIR -61 201 34 261 0 0 0 chr4 15416399 15416428 -168872234 + (T)n Simple_repeat Simple_repeat 1 29 0 295 322 26 17 chr4 15417068 15417183 -168871479 - MIR SINE MIR -11 251 136 524 250 61 28 chr4 15417188 15417368 -168871294 + MIR SINE MIR 21 206 -56 1420 188 74 14 chr4 15417403 15417770 -168870892 + L1ME1 LINE L1 5773 6161 -5 23 0 0 0 chr4 15417774 15417797 -168870865 + AT_rich Low_complexity Low_complexity 1 23 0 1356 179 54 67 chr4 15418184 15418481 -168870181 - AluJb SINE Alu -19 293 1 374 313 98 4 chr4 15418677 15418849 -168869813 + MIR3 SINE MIR 21 200 -8 284 278 65 0 chr4 15418848 15418956 -168869706 + L2 LINE L2 3146 3260 -12 * 324 299 114 5 chr4 15419271 15419455 -168869207 + L2 LINE L2 2866 3069 -203 332 344 66 27 chr4 15420454 15420637 -168868025 + L2 LINE L2 3083 3272 0 322 298 10 19 chr4 15420742 15420846 -168867816 - MER5B DNA MER1_type 0 178 76 329 320 109 0 chr4 15421244 15421372 -168867290 + MIR SINE MIR 116 257 -5 195 100 0 0 chr4 15421412 15421442 -168867220 + (TG)n Simple_repeat Simple_repeat 2 31 0 609 205 49 70 chr4 15421442 15421627 -168867035 - MER63A DNA MER1_type -1 209 29 234 305 24 12 chr4 15422437 15422519 -168866143 - MIR3 SINE MIR -15 193 111 265 296 57 0 chr4 15423798 15423886 -168864776 + MIR SINE MIR 43 135 -73 205 254 104 30 chr4 15424082 15424149 -168864513 - L2 LINE L2 -92 3221 3150 327 328 170 6 chr4 15424561 15424732 -168863930 + MIR SINE MIR 32 230 -32 3304 147 9 63 chr4 15424781 15425466 -168863196 - L1MB3 LINE L1 0 6183 5536 1121 183 0 0 chr4 15425875 15426050 -168862612 + AluJb SINE Alu 1 175 -137 240 194 28 0 chr4 15426083 15426155 -168862507 + L1MB7 LINE L1 6002 6075 -109 305 167 76 0 chr4 15426157 15426223 -168862439 + L1MB8 LINE L1 6107 6177 -1 563 0 15 0 chr4 15426613 15426680 -168861982 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 375 220 52 91 chr4 15426680 15426905 -168861757 + L1MC4a LINE L1 5695 5912 -1896 33 0 0 0 chr4 15427062 15427095 -168861567 + AT_rich Low_complexity Low_complexity 1 33 0 1043 305 38 40 chr4 15427312 15427781 -168860881 - L2 LINE L2 -38 3275 2808 2056 142 3 0 chr4 15427971 15428267 -168860395 - AluSx SINE Alu -15 297 1 860 168 0 0 chr4 15428759 15428890 -168859772 - FLAM_C SINE Alu -12 131 1 253 283 123 0 chr4 15430610 15430822 -168857840 + L1ME LINE L1 5648 5885 -236 433 290 74 78 chr4 15431679 15431910 -168856752 - MIR SINE MIR -13 249 20 503 322 101 13 chr4 15432778 15433005 -168855657 + MIR SINE MIR 6 252 -10 217 184 20 0 chr4 15433209 15433258 -168855404 + (TTCA)n Simple_repeat Simple_repeat 1 50 0 666 208 80 71 chr4 15433300 15433512 -168855150 - MER20 DNA MER1_type 0 219 6 198 286 20 0 chr4 15434411 15434460 -168854202 + L2 LINE L2 3207 3256 -16 209 205 0 13 chr4 15434471 15434549 -168854113 + (TGGA)n Simple_repeat Simple_repeat 4 80 0 413 305 31 8 chr4 15434961 15435089 -168853573 - MIR3 SINE MIR -33 175 45 226 313 31 0 chr4 15435128 15435192 -168853470 - MIR3 SINE MIR -54 154 89 21 36 0 0 chr4 15435493 15435521 -168853141 + AT_rich Low_complexity Low_complexity 1 28 0 27 100 0 0 chr4 15435549 15435639 -168853023 + AT_rich Low_complexity Low_complexity 1 90 0 286 341 35 12 chr4 15435802 15435887 -168852775 - MIR SINE MIR -86 122 36 280 291 78 19 chr4 15435932 15435979 -168852683 + MIR SINE MIR 37 80 -128 2230 97 0 3 chr4 15435979 15436278 -168852384 - AluSc SINE Alu -11 298 1 280 291 78 19 chr4 15436278 15436333 -168852329 + MIR SINE MIR 80 145 -63 2177 115 0 10 chr4 15436429 15436733 -168851929 + AluSx SINE Alu 1 301 -11 654 320 26 39 chr4 15436751 15436982 -168851680 + MIR SINE MIR 24 251 -11 2285 99 0 3 chr4 15437312 15437605 -168851057 + AluSg SINE Alu 1 292 -18 263 231 110 33 chr4 15438884 15438975 -168849687 - L2 LINE L2 -4 3268 3171 26 30 0 0 chr4 15439886 15439919 -168848743 + AT_rich Low_complexity Low_complexity 1 33 0 631 160 17 8 chr4 15439994 15440113 -168848549 - SVA Other Other -743 643 524 2245 148 69 15 chr4 15441742 15442146 -168846516 - MSTB LTR MaLR 0 426 1 350 360 48 31 chr4 15442182 15442535 -168846127 + L2 LINE L2 2399 2757 -557 623 281 159 37 chr4 15442602 15443086 -168845576 + MLT1K LTR MaLR 45 587 -1 570 229 182 31 chr4 15443386 15443434 -168845228 - MIR SINE MIR -34 228 189 1811 189 33 17 chr4 15443434 15443793 -168844869 + MLT1A1 LTR MaLR 1 365 0 570 229 182 31 chr4 15443793 15443936 -168844726 - MIR SINE MIR -73 189 8 219 308 44 11 chr4 15443977 15444068 -168844594 + L2 LINE L2 3216 3309 -4 776 329 32 56 chr4 15444254 15444719 -168843943 - MLT1K LTR MaLR -123 465 12 4582 92 19 5 chr4 15445119 15445768 -168842894 + L1PA14 LINE L1 5504 6161 0 198 0 0 0 chr4 15446085 15446107 -168842555 + (A)n Simple_repeat Simple_repeat 1 22 0 599 0 14 0 chr4 15446118 15446189 -168842473 + (GAAAA)n Simple_repeat Simple_repeat 5 76 0 811 314 68 17 chr4 15446327 15446786 -168841876 - LTR33 LTR ERVL -8 513 32 314 285 102 29 chr4 15447181 15447318 -168841344 - MIR SINE MIR -95 167 21 788 147 71 38 chr4 15447998 15448182 -168840480 - MER20 DNA MER1_type -28 191 2 240 292 35 26 chr4 15448458 15448571 -168840091 + L1ME LINE L1 5632 5745 -376 562 174 128 0 chr4 15448641 15448750 -168839912 + FLAM_A SINE Alu 2 124 -9 289 130 0 0 chr4 15449997 15450043 -168838619 - MER53 DNA DNA -143 46 1 289 294 29 29 chr4 15450235 15450337 -168838325 + MIR SINE MIR 35 136 -72 396 259 65 0 chr4 15450374 15450513 -168838149 - MER117 DNA MER1_type -49 148 1 181 283 0 0 chr4 15451267 15451313 -168837349 + MIR SINE MIR 161 206 -56 993 277 81 18 chr4 15451333 15451716 -168836946 - LTR16C LTR ERVL -14 477 71 354 261 130 9 chr4 15451794 15451909 -168836753 + L2 LINE L2 3185 3313 0 237 146 0 0 chr4 15451909 15451957 -168836705 + (TGAA)n Simple_repeat Simple_repeat 2 49 0 385 272 125 15 chr4 15453398 15453534 -168835128 - MIR3 SINE MIR -24 184 34 2131 120 34 34 chr4 15453689 15454046 -168834616 - THE1B LTR MaLR -7 357 1 391 344 30 15 chr4 15454050 15454181 -168834481 + L2 LINE L2 3140 3272 0 211 364 15 0 chr4 15454244 15454310 -168834352 - MIR SINE MIR -173 89 23 296 259 106 0 chr4 15454568 15454653 -168834009 - L2 LINE L2 -1 3312 3219 225 0 0 0 chr4 15455629 15455654 -168833008 + (T)n Simple_repeat Simple_repeat 1 25 0 1121 148 31 79 chr4 15456542 15456771 -168831891 - MER20 DNA MER1_type 0 219 2 1750 201 25 16 chr4 15458036 15458399 -168830263 + MLT1A2 LTR MaLR 9 374 0 1917 211 12 20 chr4 15458402 15458801 -168829861 - MSTD LTR MaLR 0 396 1 225 0 0 0 chr4 15458854 15458879 -168829783 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 2196 261 38 21 chr4 15458912 15459486 -168829176 - MLT1G LTR MaLR -6 584 1 312 308 44 0 chr4 15459566 15459725 -168828937 + L1M4 LINE L1 3334 3499 -2647 4703 159 9 22 chr4 15459755 15459905 -168828757 + L1MB4 LINE L1 5344 5494 -686 1945 147 0 13 chr4 15459905 15460217 -168828445 + AluSx SINE Alu 1 308 -4 4703 159 9 22 chr4 15460217 15460914 -168827748 + L1MB4 LINE L1 5494 6180 0 504 260 59 52 chr4 15461054 15461347 -168827315 + L1M4 LINE L1 3681 3975 -2171 264 146 0 42 chr4 15461533 15461581 -168827081 + tRNA-Lys-AAG tRNA tRNA 1 46 -30 652 218 28 34 chr4 15461711 15461890 -168826772 - MIR SINE MIR -21 241 64 1013 278 99 55 chr4 15461899 15462633 -168826029 - L1MEd LINE L1 -4957 1162 396 352 223 127 83 chr4 15462651 15462808 -168825854 - HAL1 LINE L1 -1164 1343 1180 254 224 104 0 chr4 15463076 15463143 -168825519 - HAL1 LINE L1 -2019 488 415 1898 181 103 32 chr4 15463302 15463738 -168824924 - MLT1C LTR MaLR 0 467 1 231 214 0 0 chr4 15463808 15463878 -168824784 + (CA)n Simple_repeat Simple_repeat 1 70 0 2003 221 50 48 chr4 15463897 15464011 -168824651 - MER74B LTR ERVL -6 616 504 2082 176 69 19 chr4 15464011 15464386 -168824276 - MSTD LTR MaLR 0 396 3 2003 221 50 48 chr4 15464386 15464831 -168823831 - MER74B LTR ERVL -118 504 56 269 186 14 0 chr4 15464831 15464901 -168823761 + (CA)n Simple_repeat Simple_repeat 1 71 0 236 337 0 12 chr4 15465016 15465099 -168823563 - HAL1 LINE L1 -2422 85 4 369 0 0 0 chr4 15466222 15466263 -168822399 + (TC)n Simple_repeat Simple_repeat 2 42 0 * 405 0 0 0 chr4 15466262 15466307 -168822355 + (TA)n Simple_repeat Simple_repeat 1 45 0 216 191 64 0 chr4 15466327 15466374 -168822288 - L2 LINE L2 -2 3311 3262 361 304 94 55 chr4 15467087 15467288 -168821374 - MIR SINE MIR -7 255 47 393 296 109 14 chr4 15467690 15467923 -168820739 + MIR SINE MIR 7 259 -3 195 208 69 69 chr4 15468548 15468620 -168820042 - MIR SINE MIR -21 241 170 2784 260 101 69 chr4 15468694 15469899 -168818763 - L2 LINE L2 -2 3311 2146 2878 98 36 0 chr4 15469899 15470316 -168818346 + L1MA2 LINE L1 5873 6304 0 2784 260 101 69 chr4 15470316 15470566 -168818096 - L2 LINE L2 -1167 2146 1905 2302 97 0 0 chr4 15470566 15470856 -168817806 + AluSg SINE Alu 1 290 -20 2784 260 101 69 chr4 15470856 15471203 -168817459 - L2 LINE L2 -1408 1905 1351 1415 246 109 8 chr4 15471649 15472043 -168816619 - MER57B LTR ERV1 0 434 1 2341 94 3 0 chr4 15472593 15472891 -168815771 + AluSx SINE Alu 1 299 -13 291 120 359 33 chr4 15472941 15473033 -168815629 - L2 LINE L2 0 3313 3192 244 291 162 8 chr4 15473926 15474043 -168814619 + L2 LINE L2 3136 3270 -2 193 230 92 115 chr4 15475550 15475637 -168813025 + MER5B DNA MER1_type 17 101 -77 367 293 69 17 chr4 15475688 15475804 -168812858 - MIR SINE MIR -110 152 31 2495 152 38 31 chr4 15476609 15476799 -168811863 + MSTB LTR MaLR 1 188 -238 2265 108 0 7 chr4 15476799 15477104 -168811558 + AluSx SINE Alu 1 303 -9 2495 152 38 31 chr4 15477104 15477334 -168811328 + MSTB LTR MaLR 188 424 -2 1434 218 32 47 chr4 15477910 15478290 -168810372 - MLT1B LTR MaLR -16 374 1 24 0 0 0 chr4 15478300 15478324 -168810338 + AT_rich Low_complexity Low_complexity 1 24 0 826 236 50 0 chr4 15478984 15479166 -168809496 - MLT1F1 LTR MaLR -376 191 1 357 292 100 8 chr4 15479461 15479591 -168809071 + MIR SINE MIR 14 155 -107 1196 276 141 25 chr4 15479798 15480451 -168808211 - L2 LINE L2 -339 2975 2247 444 279 175 13 chr4 15480449 15480678 -168807984 + L2 LINE L2 3039 3304 -9 * 4720 130 16 0 chr4 15480718 15481481 -168807181 - L1MA4 LINE L1 -311 7408 6634 * 7954 174 28 25 chr4 15481461 15484168 -168804494 - L1MA4 LINE L1 -2216 5349 2622 1705 240 73 38 chr4 15485130 15485706 -168802956 + L2 LINE L2 1744 2339 -975 2034 246 23 19 chr4 15485716 15486245 -168802417 - L1ME1 LINE L1 -7 6159 5629 1718 187 113 28 chr4 15486264 15486687 -168801975 + LTR2B LTR ERV1 32 490 0 1765 198 34 26 chr4 15486688 15486977 -168801685 - L1ME1 LINE L1 -535 5631 5346 2070 140 0 3 chr4 15486977 15487277 -168801385 - AluSx SINE Alu -13 299 1 1765 198 34 26 chr4 15487277 15487623 -168801039 - L1ME1 LINE L1 -820 5346 4989 1666 226 59 23 chr4 15487624 15488067 -168800595 + L2 LINE L2 2328 2786 -528 971 273 94 53 chr4 15488571 15488810 -168799852 + L2 LINE L2 2804 3032 -281 1465 178 35 49 chr4 15488810 15489145 -168799517 - AluJb SINE Alu 0 331 1 971 273 94 53 chr4 15489145 15489391 -168799271 + L2 LINE L2 3032 3311 -2 6036 113 39 2 chr4 15490476 15490678 -168797984 - L1PA15 LINE L1 -3 6162 5969 1999 139 3 10 chr4 15490678 15490981 -168797681 - AluSx SINE Alu -11 301 1 6036 113 39 2 chr4 15490981 15492125 -168796537 - L1PA15 LINE L1 -196 5969 4820 416 222 54 11 chr4 15492125 15492233 -168796429 + L1PA8A LINE L1 4179 5663 -468 2912 200 2 0 chr4 15492244 15492825 -168795837 + L1P LINE L1 4249 4830 -1316 402 213 57 8 chr4 15493020 15493142 -168795520 - Charlie2 DNA MER1_type -2 2860 2733 1438 201 25 0 chr4 15493142 15493426 -168795236 - L1M4 LINE L1 -592 5592 5302 296 200 0 29 chr4 15493399 15493469 -168795193 + L1MB7 LINE L1 6117 6184 0 * 1879 197 19 8 chr4 15494645 15495016 -168793646 + L1MC1 LINE L1 5957 6331 -2 545 224 0 28 chr4 15495540 15495647 -168793015 - Tigger3(Golem) DNA MER2_type 0 3038 2935 297 0 0 0 chr4 15495647 15495680 -168792982 + (TG)n Simple_repeat Simple_repeat 2 34 0 240 35 0 0 chr4 15495679 15495708 -168792954 + (TA)n Simple_repeat Simple_repeat 2 30 0 * 481 200 0 0 chr4 15495819 15495899 -168792763 - Tigger3(Golem) DNA MER2_type -2949 80 1 252 269 183 11 chr4 15496717 15496810 -168791852 - MER5A DNA MER1_type -63 126 18 210 342 69 52 chr4 15497209 15497440 -168791222 + MIR SINE MIR 12 246 -16 288 161 0 0 chr4 15497936 15497998 -168790664 + T-rich Low_complexity Low_complexity 1 62 0 1607 144 8 23 chr4 15498620 15498877 -168789785 + AluJo SINE Alu 35 287 -25 585 233 57 32 chr4 15498888 15499118 -168789544 - MIR SINE MIR -1 261 24 647 270 56 26 chr4 15500465 15500698 -168787964 + MIR SINE MIR 3 242 -20 651 194 31 42 chr4 15501245 15501436 -168787226 + L1M4 LINE L1 5088 5276 -870 2367 84 0 19 chr4 15502363 15502672 -168785990 + AluSg SINE Alu 1 303 -7 2178 209 153 12 chr4 15503112 15503673 -168784989 - LTR48B LTR ERV1 0 644 5 299 267 81 50 chr4 15503703 15503961 -168784701 + LTR16C LTR ERVL 224 489 -2 312 324 0 0 chr4 15504118 15504192 -168784470 - MIR SINE MIR -185 77 4 2200 112 0 0 chr4 15504849 15505143 -168783519 - AluSx SINE Alu -16 296 3 1410 168 158 13 chr4 15505249 15505553 -168783109 - MER7A DNA MER2_type 0 346 1 1930 153 0 0 chr4 15505885 15506167 -168782495 + AluJb SINE Alu 1 282 -30 4456 159 58 18 chr4 15507455 15508249 -168780413 + L1MB3 LINE L1 5305 6136 -47 2038 108 31 3 chr4 15508249 15508537 -168780125 + AluSx SINE Alu 1 296 -16 4456 159 58 18 chr4 15508537 15508585 -168780077 + L1MB3 LINE L1 6136 6181 -2 1172 241 21 0 chr4 15508776 15509017 -168779645 - MLT1F1 LTR MaLR -316 251 6 200 159 0 23 chr4 15509570 15509614 -168779048 + GA-rich Low_complexity Low_complexity 2 44 0 599 303 22 0 chr4 15509688 15509866 -168778796 - MIR SINE MIR -56 206 25 307 211 154 49 chr4 15510830 15510953 -168777709 + L2 LINE L2 3136 3271 -1 299 323 113 0 chr4 15511024 15511157 -168777505 - MIR SINE MIR -60 202 55 21 0 0 0 chr4 15511410 15511431 -168777231 + AT_rich Low_complexity Low_complexity 1 21 0 2628 43 7 0 chr4 15512513 15512818 -168775844 - AluY SINE Alu -4 307 1 585 301 77 0 chr4 15513044 15513227 -168775435 + MIR SINE MIR 32 228 -34 2740 106 5 19 chr4 15513291 15513660 -168775002 - THE1B LTR MaLR 0 364 1 10598 80 98 3 chr4 15513660 15515103 -168773559 - THE1B-int LTR MaLR 0 1580 2 2595 125 5 19 chr4 15515104 15515473 -168773189 - THE1B LTR MaLR 0 364 1 463 275 75 35 chr4 15515586 15515776 -168772886 + MIR SINE MIR 7 202 -60 29 28 0 0 chr4 15515785 15515821 -168772841 + AT_rich Low_complexity Low_complexity 1 36 0 182 179 0 0 chr4 15517261 15517300 -168771362 + MIR SINE MIR 210 248 -14 1708 178 3 22 chr4 15517488 15517778 -168770884 + AluJo SINE Alu 1 286 -26 255 61 0 0 chr4 15517778 15517811 -168770851 + (CATA)n Simple_repeat Simple_repeat 2 34 0 1708 178 3 22 chr4 15517811 15517835 -168770827 + AluJo SINE Alu 286 309 -3 2119 102 20 3 chr4 15518408 15518701 -168769961 + AluSq SINE Alu 1 298 -15 225 0 0 0 chr4 15518752 15518777 -168769885 + (TTCC)n Simple_repeat Simple_repeat 3 27 0 205 290 43 14 chr4 15518800 15518869 -168769793 - L2 LINE L2 -12 3260 3190 474 192 10 20 chr4 15519116 15519215 -168769447 - MLT1K LTR MaLR -9 579 482 2307 98 0 0 chr4 15519705 15520002 -168768660 - AluSg1 SINE Alu -12 297 1 2622 45 0 10 chr4 15520012 15520322 -168768340 - AluY SINE Alu -4 307 1 535 242 18 8 chr4 15521873 15522017 -168766645 - MIR SINE MIR -57 151 9 277 319 76 47 chr4 15524430 15524696 -168763966 + L1ME LINE L1 5450 5741 -429 1617 163 94 4 chr4 15524696 15524973 -168763689 + AluJo SINE Alu 1 302 -10 277 319 76 47 chr4 15524973 15525091 -168763571 + L1ME LINE L1 5741 5854 -316 387 350 65 38 chr4 15525096 15525387 -168763275 - L1MC4a LINE L1 -1897 5911 5613 182 79 0 53 chr4 15525415 15525453 -168763209 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 472 15 61 30 chr4 15525466 15525532 -168763130 - L1PA4 LINE L1 0 6155 6088 2632 49 0 0 chr4 15525534 15525842 -168762820 - AluY SINE Alu -3 308 1 36 0 0 0 chr4 15525954 15525990 -168762672 + AT_rich Low_complexity Low_complexity 1 36 0 552 323 119 31 chr4 15526569 15527158 -168761504 + L2 LINE L2 1640 2280 -1034 24 32 0 0 chr4 15527239 15527270 -168761392 + AT_rich Low_complexity Low_complexity 1 31 0 787 268 72 4 chr4 15527500 15527735 -168760927 - MIR SINE MIR -10 252 2 884 263 118 78 chr4 15528923 15530060 -168758602 - L1ME3 LINE L1 0 6162 4968 262 290 100 0 chr4 15530366 15530466 -168758196 + L2 LINE L2 3153 3262 -10 270 320 100 0 chr4 15530611 15530711 -168757951 + L2 LINE L2 3153 3262 -10 323 286 0 0 chr4 15530842 15530940 -168757722 + CT-rich Low_complexity Low_complexity 4 101 0 231 318 24 0 chr4 15531497 15531582 -168757080 - MER103 DNA DNA -53 113 27 2444 42 3 14 chr4 15531750 15532038 -168756624 + L1PA6 LINE L1 5863 6147 -7 23 0 0 0 chr4 15532038 15532061 -168756601 + AT_rich Low_complexity Low_complexity 1 23 0 696 253 82 12 chr4 15532204 15532435 -168756227 + MIR SINE MIR 18 262 0 207 286 0 0 chr4 15532938 15532987 -168755675 - MIR SINE MIR -31 231 183 534 259 74 78 chr4 15533177 15533420 -168755242 - MIR SINE MIR -3 259 18 314 138 215 0 chr4 15533854 15533919 -168754743 + MER116 DNA Mariner 1 79 -1 29 28 0 0 chr4 15534346 15534382 -168754280 + AT_rich Low_complexity Low_complexity 1 36 0 419 186 14 0 chr4 15534417 15534487 -168754175 + MER5A DNA MER1_type 4 74 -115 866 156 0 15 chr4 15534489 15534624 -168754038 + AluJo SINE Alu 2 134 -178 311 149 176 0 chr4 15534626 15534700 -168753962 - MER6 DNA MER2_type -168 697 611 25 0 0 0 chr4 15534719 15534744 -168753918 + AT_rich Low_complexity Low_complexity 1 25 0 519 241 28 0 chr4 15534747 15534855 -168753807 + MER5A DNA MER1_type 61 171 -18 886 146 6 30 chr4 15535509 15535673 -168752989 + L1MB4 LINE L1 6015 6174 -6 1918 116 32 25 chr4 15536610 15536894 -168751768 + AluSx SINE Alu 1 286 -26 26 0 0 0 chr4 15536900 15536926 -168751736 + AT_rich Low_complexity Low_complexity 1 26 0 1715 201 83 47 chr4 15537379 15537826 -168750836 - MLT1C LTR MaLR -4 463 1 404 217 0 0 chr4 15538067 15538136 -168750526 - MER117 DNA MER1_type -84 113 45 22 0 0 0 chr4 15540426 15540448 -168748214 + AT_rich Low_complexity Low_complexity 1 22 0 2006 143 0 3 chr4 15541398 15541691 -168746971 + AluJo SINE Alu 1 292 -20 2407 126 27 8 chr4 15542747 15543121 -168745541 - L1MA4 LINE L1 -5 6295 5915 354 143 79 0 chr4 15543121 15543184 -168745478 + MER20 DNA MER1_type 117 184 -35 2226 113 6 0 chr4 15543330 15543641 -168745021 + AluSp SINE Alu 1 313 0 201 316 0 32 chr4 15544031 15544126 -168744536 + MIR SINE MIR 164 255 -7 1082 207 128 20 chr4 15544409 15544801 -168743861 + L1MC5 LINE L1 7480 7913 -48 1996 111 0 0 chr4 15545114 15545385 -168743277 + AluSx SINE Alu 23 293 -19 599 318 28 14 chr4 15546709 15546923 -168741739 + L1ME LINE L1 5523 5739 -382 605 237 79 91 chr4 15546947 15547440 -168741222 - L1MEd LINE L1 -4968 1151 665 449 298 20 33 chr4 15547475 15547626 -168741036 + MIR SINE MIR 39 187 -75 362 205 12 12 chr4 15547787 15547870 -168740792 - MIR SINE MIR 0 262 180 462 261 33 61 chr4 15547876 15548121 -168740541 + L2 LINE L2 2916 3153 -160 336 255 19 38 chr4 15548263 15548369 -168740293 + L2 LINE L2 3210 3313 0 * 382 264 20 47 chr4 15548347 15548495 -168740167 - MIR SINE MIR -49 213 70 273 209 149 0 chr4 15549121 15549188 -168739474 - MIR SINE MIR -73 189 113 297 289 15 81 chr4 15549392 15549529 -168739133 + MIR SINE MIR 23 151 -57 1871 151 7 10 chr4 15549962 15550253 -168738409 + AluSx SINE Alu 1 290 -22 266 276 46 11 chr4 15550862 15550949 -168737713 + MIR SINE MIR 11 100 -162 1848 169 10 3 chr4 15551028 15551330 -168737332 + AluJb SINE Alu 1 304 -8 274 203 54 14 chr4 15551422 15551496 -168737166 - MIR SINE MIR -114 148 72 347 278 82 76 chr4 15553879 15554170 -168734492 - MLT1K LTR MaLR 0 588 296 197 267 111 33 chr4 15554869 15554959 -168733703 + MIR SINE MIR 36 132 -130 186 43 0 0 chr4 15555242 15555265 -168733397 + (TTCC)n Simple_repeat Simple_repeat 2 24 0 234 0 0 0 chr4 15555375 15555401 -168733261 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1782 156 0 34 chr4 15555408 15555703 -168732959 - AluJb SINE Alu -27 285 1 374 266 81 8 chr4 15555812 15555936 -168732726 - L2 LINE L2 0 3313 3181 21 0 0 0 chr4 15556226 15556247 -168732415 + AT_rich Low_complexity Low_complexity 1 21 0 211 219 0 0 chr4 15557110 15557151 -168731511 + T-rich Low_complexity Low_complexity 5 45 0 486 292 103 17 chr4 15557410 15557643 -168731019 + MIR SINE MIR 7 259 -3 684 255 90 5 chr4 15558166 15558378 -168730284 - MIR SINE MIR -3 259 30 21 71 0 0 chr4 15612365 15612407 -168676255 + AT_rich Low_complexity Low_complexity 1 42 0 2389 94 0 0 chr4 15612669 15612967 -168675695 - AluSg SINE Alu -9 301 4 181 255 94 47 chr4 15613301 15613407 -168675255 + MIR SINE MIR 137 247 -15 357 62 0 0 chr4 15614394 15614442 -168674220 + (CA)n Simple_repeat Simple_repeat 2 49 0 577 142 0 19 chr4 15614569 15614675 -168673987 - L1MA4 LINE L1 0 6300 6197 608 316 55 38 chr4 15615015 15615306 -168673356 + L2 LINE L2 2999 3294 -19 26 0 0 0 chr4 15616130 15616156 -168672506 + AT_rich Low_complexity Low_complexity 1 26 0 10414 55 10 0 chr4 15616559 15618655 -168670007 - L1PA6 LINE L1 -4 6150 4041 1681 154 3 30 chr4 15619241 15619539 -168669123 - AluSx SINE Alu -22 290 1 964 191 53 14 chr4 15619572 15619781 -168668881 - MER20 DNA MER1_type -1 218 2 1184 171 0 45 chr4 15619823 15619993 -168668669 - AluJb SINE Alu -14 298 139 2390 84 3 3 chr4 15619993 15620304 -168668358 - AluSx SINE Alu -1 311 1 1184 171 0 45 chr4 15620304 15620355 -168668307 - AluJb SINE Alu -173 139 87 24 32 0 0 chr4 15620477 15620508 -168668154 + AT_rich Low_complexity Low_complexity 1 31 0 2170 102 10 3 chr4 15620687 15620982 -168667680 + AluSq SINE Alu 1 297 -16 2233 120 3 0 chr4 15621109 15621418 -168667244 + AluSq SINE Alu 1 310 -3 36 70 0 0 chr4 15621688 15621759 -168666903 + AT_rich Low_complexity Low_complexity 1 71 0 326 217 60 0 chr4 15621813 15621896 -168666766 - L1MC5 LINE L1 -65 7896 7809 2220 111 3 0 chr4 15623779 15624086 -168664576 + AluSp SINE Alu 1 308 -5 233 320 105 70 chr4 15624386 15624558 -168664104 + MER5B DNA MER1_type 1 178 0 334 263 36 124 chr4 15624573 15624767 -168663895 - MER5B DNA MER1_type 0 178 2 1697 181 3 16 chr4 15624937 15625241 -168663421 - AluJo SINE Alu -12 300 1 24 32 0 0 chr4 15626044 15626075 -168662587 + AT_rich Low_complexity Low_complexity 1 31 0 2467 140 11 36 chr4 15626180 15626624 -168662038 + Tigger2a DNA MER2_type 2 434 0 1875 138 0 4 chr4 15626643 15626919 -168661743 + AluSx SINE Alu 2 276 -36 338 306 126 46 chr4 15627107 15627272 -168661390 - L3 LINE CR1 -121 1456 1261 1929 134 31 10 chr4 15627272 15627563 -168661099 - AluSx SINE Alu -15 297 1 338 306 126 46 chr4 15627563 15627658 -168661004 - L3 LINE CR1 -316 1261 1175 263 333 79 45 chr4 15627604 15627895 -168660767 + L2 LINE L2 2075 2375 -939 * 1527 124 55 0 chr4 15628515 15628732 -168659930 - AluSq SINE Alu -83 230 2 1710 211 62 27 chr4 15628972 15629422 -168659240 + MER31B LTR ERV1 1 466 0 387 272 34 48 chr4 15630378 15630450 -168658212 + MIR SINE MIR 32 103 -159 2293 99 0 3 chr4 15630450 15630753 -168657909 - AluSg SINE Alu -8 302 1 387 272 34 48 chr4 15630753 15630827 -168657835 + MIR SINE MIR 103 176 -86 21 36 0 0 chr4 15630860 15630888 -168657774 + AT_rich Low_complexity Low_complexity 1 28 0 556 219 12 98 chr4 15630907 15631071 -168657591 - L2 LINE L2 -13 3300 3151 1450 197 35 14 chr4 15631073 15631377 -168657285 - MER58B DNA MER1_type 0 341 29 2356 26 10 20 chr4 15631571 15631877 -168656785 - L1PA4 LINE L1 0 6155 5853 2419 103 0 0 chr4 15631969 15632281 -168656381 + AluSx SINE Alu 1 312 0 1201 147 5 43 chr4 15632323 15632534 -168656128 - MER2 DNA MER2_type -142 203 1 705 209 143 61 chr4 15632745 15632898 -168655764 + MIR SINE MIR 7 181 -81 1771 151 10 20 chr4 15632898 15633190 -168655472 - AluJo SINE Alu -23 289 1 705 209 143 61 chr4 15633190 15633232 -168655430 + MIR SINE MIR 181 218 -44 4035 151 40 1 chr4 15633324 15634057 -168654605 + L1MA9 LINE L1 5552 6312 0 2066 93 29 39 chr4 15634331 15634643 -168654019 + AluSc SINE Alu 1 309 0 375 299 123 0 chr4 15634789 15634943 -168653719 - MIR SINE MIR -31 231 59 847 201 39 6 chr4 15635108 15635287 -168653375 + MER20 DNA MER1_type 30 214 -5 370 279 91 30 chr4 15635343 15635540 -168653122 + MER112 DNA MER1_type 51 259 -1 493 72 0 0 chr4 15635691 15635760 -168652902 - AluSg1 SINE Alu -4 306 238 1499 96 15 0 chr4 15635763 15635961 -168652701 - AluSg1 SINE Alu -108 201 1 258 291 100 36 chr4 15636192 15636302 -168652360 - MIR3 SINE MIR -30 178 62 365 248 97 35 chr4 15636351 15636496 -168652166 + MIR SINE MIR 51 204 -58 21 36 0 0 chr4 15636737 15636765 -168651897 + AT_rich Low_complexity Low_complexity 1 28 0 247 346 70 33 chr4 15637318 15637492 -168651170 + MIR3 SINE MIR 10 184 -67 414 264 138 25 chr4 15638827 15638986 -168649676 - MER5B DNA MER1_type -1 177 1 247 315 45 11 chr4 15641610 15641699 -168646963 + L2 LINE L2 3162 3253 -19 611 256 149 5 chr4 15641796 15641991 -168646671 + MIR SINE MIR 1 223 -39 180 318 27 64 chr4 15642042 15642152 -168646510 - MIR SINE MIR -133 129 24 333 274 186 0 chr4 15642439 15642541 -168646121 + L2 LINE L2 3193 3313 0 2848 102 39 0 chr4 15643535 15643947 -168644715 + MSTC LTR MaLR 1 428 0 1791 164 7 17 chr4 15645270 15645569 -168643093 - AluJo SINE Alu -16 296 1 228 172 46 115 chr4 15645839 15645926 -168642736 + MER94 DNA DNA 30 110 -24 2102 122 7 0 chr4 15645984 15646278 -168642384 + AluSx SINE Alu 1 296 -16 224 202 275 0 chr4 15646513 15646622 -168642040 + MIR SINE MIR 121 259 -3 208 323 0 0 chr4 15646613 15646678 -168641984 + MIR3 SINE MIR 121 185 -23 * 320 175 0 75 chr4 15646764 15646840 -168641822 - MLT1J LTR MaLR -19 492 423 1589 226 41 85 chr4 15646840 15647402 -168641260 - MLT1F LTR MaLR 0 542 6 445 290 71 7 chr4 15647518 15647673 -168640989 + MIR SINE MIR 82 246 -16 187 238 0 0 chr4 15648457 15648499 -168640163 + MIR SINE MIR 217 258 -4 230 239 73 73 chr4 15648613 15648722 -168639940 + MIR SINE MIR 12 120 -142 403 269 29 0 chr4 15648782 15648886 -168639776 + MIR SINE MIR 128 234 -28 640 306 50 22 chr4 15649097 15649319 -168639343 - MIR SINE MIR -33 229 2 2460 82 0 3 chr4 15649738 15650043 -168638619 - AluSq SINE Alu -6 307 4 22 35 0 0 chr4 15650840 15650869 -168637793 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 15651204 15651225 -168637437 + AT_rich Low_complexity Low_complexity 1 21 0 1789 166 0 3 chr4 15651306 15651602 -168637060 + AluJo SINE Alu 3 297 -15 1113 127 68 14 chr4 15651602 15651822 -168636840 + L1MA7 LINE L1 5899 6130 -161 1049 178 56 5 chr4 15651822 15652019 -168636643 + AluJb SINE Alu 87 293 -19 796 155 6 25 chr4 15652032 15652193 -168636469 + L1MA7 LINE L1 6128 6285 -6 208 242 30 45 chr4 15652442 15652508 -168636154 + MIR SINE MIR 188 252 -10 2272 75 4 0 chr4 15652963 15653244 -168635418 + AluSp SINE Alu 17 298 -15 201 191 29 29 chr4 15653643 15653711 -168634951 + T-rich Low_complexity Low_complexity 4 71 0 1438 180 75 7 chr4 15654302 15654608 -168634054 - MER7A DNA MER2_type -9 337 13 336 135 77 0 chr4 15654676 15654728 -168633934 + Alu SINE Alu 236 291 -11 303 231 22 55 chr4 15654740 15654831 -168633831 - L1MC5 LINE L1 -49 7912 7825 1021 213 82 28 chr4 15655278 15655560 -168633102 - L1ME1 LINE L1 -328 5907 5611 703 210 97 5 chr4 15655566 15655761 -168632901 - L1ME1 LINE L1 -3905 2491 2279 237 150 0 260 chr4 15655775 15655875 -168632787 + MER20 DNA MER1_type 1 74 -145 * 268 222 0 91 chr4 15655864 15655963 -168632699 - MER58 DNA MER1_type -226 115 26 1201 259 116 51 chr4 15655963 15656100 -168632562 - L1ME1 LINE L1 -4647 1749 1622 2424 98 0 0 chr4 15656100 15656407 -168632255 - AluSx SINE Alu -5 307 1 1201 259 116 51 chr4 15656407 15656629 -168632033 - L1ME1 LINE L1 -4774 1622 1416 874 135 0 8 chr4 15656629 15656755 -168631907 - FLAM_C SINE Alu -6 127 3 1201 259 116 51 chr4 15656755 15657104 -168631558 - L1ME1 LINE L1 -4980 1416 994 1653 214 32 3 chr4 15657146 15657492 -168631170 - L1ME1 LINE L1 -5529 867 512 3419 134 105 29 chr4 15657504 15658343 -168630319 - Tigger3(Golem) DNA MER2_type 0 3028 2254 1814 170 7 3 chr4 15658343 15658643 -168630019 + AluJb SINE Alu 1 301 -11 3419 134 105 29 chr4 15658643 15658807 -168629855 - Tigger3(Golem) DNA MER2_type -774 2254 1 1393 265 65 8 chr4 15658812 15659197 -168629465 - L1ME1 LINE L1 -5903 493 87 21 0 0 0 chr4 15659388 15659409 -168629253 + AT_rich Low_complexity Low_complexity 1 21 0 2439 75 0 0 chr4 15659839 15660133 -168628529 - AluY SINE Alu -17 294 1 2299 110 0 3 chr4 15660757 15661065 -168627597 - AluSq SINE Alu -6 307 1 326 298 19 29 chr4 15661190 15661294 -168627368 + MIR3 SINE MIR 58 160 -48 312 240 32 75 chr4 15661451 15661991 -168626671 + L1MC5 LINE L1 7299 7923 -38 2120 214 88 102 chr4 15662439 15663204 -168625458 + MER21B LTR ERV1 1 754 -109 2261 83 38 0 chr4 15664247 15664535 -168624127 - AluSc SINE Alu -10 299 1 26 0 0 0 chr4 15664774 15664800 -168623862 + GC_rich Low_complexity Low_complexity 1 26 0 834 262 122 33 chr4 15665052 15665502 -168623160 + L1MC4a LINE L1 5533 6022 -1786 2215 79 3 26 chr4 15665639 15665944 -168622718 + AluSx SINE Alu 1 298 -14 230 256 13 0 chr4 15666153 15666231 -168622431 + (TA)n Simple_repeat Simple_repeat 2 80 0 288 250 74 40 chr4 15667776 15667924 -168620738 - L1ME2 LINE L1 -244 5920 5768 197 210 113 16 chr4 15667924 15667986 -168620676 + L2 LINE L2 3202 3269 -3 180 353 98 0 chr4 15667992 15668114 -168620548 - L2 LINE L2 -242 3030 2897 466 299 149 9 chr4 15668425 15668646 -168620016 + L2 LINE L2 1273 1524 -1790 1603 209 104 65 chr4 15670399 15670936 -168617726 - MER74A LTR ERVL 0 558 1 435 262 63 0 chr4 15671743 15671869 -168616793 - MER112 DNA MER1_type 0 260 127 363 322 36 39 chr4 15673089 15673576 -168615086 + Charlie1 DNA MER1_type 1259 1918 -843 29 28 0 0 chr4 15674306 15674342 -168614320 + AT_rich Low_complexity Low_complexity 1 36 0 541 252 87 34 chr4 15674343 15674549 -168614113 - L2 LINE L2 -5 3308 3092 * 668 297 32 0 chr4 15674518 15674703 -168613959 - L2 LINE L2 -450 2864 2674 1773 172 0 10 chr4 15674744 15675034 -168613628 + AluJo SINE Alu 3 289 -23 218 231 0 58 chr4 15675235 15675287 -168613375 + L2 LINE L2 3224 3272 0 521 298 60 24 chr4 15675892 15676140 -168612522 + LTR40b LTR ERVL 125 381 -81 565 152 22 11 chr4 15676149 15676241 -168612421 - MLT1D LTR MaLR -408 97 5 3528 203 69 127 chr4 15676246 15677034 -168611628 - MLT1D-int LTR MaLR -3 1368 698 334 148 0 0 chr4 15677034 15677095 -168611567 + L1MB3 LINE L1 6121 6181 -2 3528 203 69 127 chr4 15677095 15677731 -168610931 - MLT1D-int LTR MaLR -673 698 27 2298 210 53 14 chr4 15677943 15678429 -168610233 - MLT1D LTR MaLR 0 505 1 677 219 121 6 chr4 15678845 15679192 -168609470 - L1MB8 LINE L1 -239 5939 5284 1315 207 151 54 chr4 15679212 15679695 -168608967 - LTR10B LTR ERV1 -5 542 13 5415 238 13 22 chr4 15679721 15680967 -168607695 - HERVI LTR ERV1 -2 7783 6549 869 246 131 21 chr4 15680968 15681305 -168607357 - MER50 LTR ERV1 -349 385 12 295 138 103 0 chr4 15681323 15681381 -168607281 - MER30 DNA MER1_type -111 119 56 407 69 222 0 chr4 15681397 15681469 -168607193 - MER30 DNA MER1_type -142 88 1 547 200 62 0 chr4 15681471 15681601 -168607061 - L1MB8 LINE L1 -880 5266 5129 1014 158 4 61 chr4 15681629 15681727 -168606935 + MER63 DNA MER1_type 822 924 -137 2320 91 0 3 chr4 15681727 15682025 -168606637 - AluY SINE Alu -14 297 1 1014 158 4 61 chr4 15682025 15682154 -168606508 + MER63 DNA MER1_type 924 1036 -25 495 169 22 0 chr4 15682169 15682258 -168606404 - L1MC5 LINE L1 -564 7397 7307 180 152 0 0 chr4 15682258 15682291 -168606371 + (TAGA)n Simple_repeat Simple_repeat 2 34 0 1017 266 146 71 chr4 15682434 15682956 -168605706 + HAL1 LINE L1 90 674 -1833 2483 84 0 7 chr4 15682956 15683266 -168605396 + AluY SINE Alu 1 308 -3 1017 266 146 71 chr4 15683266 15683409 -168605253 + HAL1 LINE L1 674 805 -1702 1645 107 18 14 chr4 15683413 15683702 -168604960 + THE1B LTR MaLR 1 374 -1 1370 200 100 147 chr4 15683737 15683954 -168604708 + HAL1 LINE L1 839 1065 -1442 342 45 0 0 chr4 15683954 15683998 -168604664 + (TA)n Simple_repeat Simple_repeat 1 44 0 1370 200 100 147 chr4 15683998 15684746 -168603916 + HAL1 LINE L1 1065 1759 -748 2776 59 0 85 chr4 15684747 15685135 -168603527 - THE1A LTR MaLR 0 355 1 1367 84 31 0 chr4 15685135 15685326 -168603336 - THE1A-int LTR MaLR 0 1580 1384 228 211 18 0 chr4 15685321 15685378 -168603284 + HAL1 LINE L1 2036 2093 -414 * 2020 153 67 28 chr4 15685433 15685656 -168603006 - MSTA LTR MaLR 0 428 182 2170 82 30 33 chr4 15685656 15685960 -168602702 - AluSc SINE Alu -6 303 1 2020 153 67 28 chr4 15685960 15686127 -168602535 - MSTA LTR MaLR -246 182 23 493 75 12 50 chr4 15686140 15686220 -168602442 + MER4A LTR ERV1 22 98 -566 2032 113 6 30 chr4 15686220 15686574 -168602088 + MER4A LTR ERV1 261 664 0 358 203 14 0 chr4 15686574 15686648 -168602014 + HAL1 LINE L1 2324 2398 -109 2496 60 0 0 chr4 15686853 15687152 -168601510 - AluY SINE Alu -12 299 1 270 316 53 45 chr4 15687211 15687230 -168601432 + MIR SINE MIR 84 101 -161 1667 207 30 9 chr4 15687230 15687564 -168601098 + MER2 DNA MER2_type 1 341 -3 270 316 53 45 chr4 15687564 15687677 -168600985 + MIR SINE MIR 101 217 -45 1685 149 6 37 chr4 15687923 15688245 -168600417 - AluJb SINE Alu 0 312 1 207 152 0 0 chr4 15688429 15688475 -168600187 + (CTG)n Simple_repeat Simple_repeat 1 46 0 27 29 0 0 chr4 15688475 15688509 -168600153 + GC_rich Low_complexity Low_complexity 1 34 0 320 234 19 32 chr4 15688889 15689047 -168599615 + (TG)n Simple_repeat Simple_repeat 2 157 0 233 250 41 23 chr4 15689223 15689395 -168599267 + (TG)n Simple_repeat Simple_repeat 1 175 0 226 230 40 27 chr4 15689656 15689804 -168598858 + (TG)n Simple_repeat Simple_repeat 1 150 0 2011 144 150 5 chr4 15691068 15691442 -168597220 - MSTA LTR MaLR 0 428 1 253 343 105 19 chr4 15692067 15692172 -168596490 - L2 LINE L2 -8 3264 3151 461 282 43 31 chr4 15692313 15692476 -168596186 - MIR SINE MIR -50 212 48 193 272 25 37 chr4 15692945 15693026 -168595636 - MIR SINE MIR -26 236 157 216 0 0 0 chr4 15693090 15693114 -168595548 + (TC)n Simple_repeat Simple_repeat 2 25 0 245 207 46 0 chr4 15693114 15693201 -168595461 - L1MC4 LINE L1 -1339 6703 6613 637 208 161 10 chr4 15693201 15693368 -168595294 - MIR SINE MIR -36 172 3 277 282 161 32 chr4 15693368 15693492 -168595170 - MIR SINE MIR -110 152 13 1956 139 3 7 chr4 15693858 15694153 -168594509 + AluSx SINE Alu 1 294 -18 1112 258 123 47 chr4 15694190 15694722 -168593940 - L2 LINE L2 0 3313 2741 189 0 0 0 chr4 15695207 15695228 -168593434 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 1607 177 25 7 chr4 15695246 15695529 -168593133 - AluJo SINE Alu -24 288 1 21 0 0 0 chr4 15695536 15695557 -168593105 + AT_rich Low_complexity Low_complexity 1 21 0 3480 131 63 0 chr4 15695557 15696049 -168592613 - L1MA6 LINE L1 0 6300 5767 2227 129 0 0 chr4 15696049 15696351 -168592311 - AluSx SINE Alu -10 302 1 3480 131 63 0 chr4 15696351 15696417 -168592245 - L1MA6 LINE L1 -533 5767 5707 343 324 97 0 chr4 15697239 15697384 -168591278 + MIR SINE MIR 100 258 -4 2158 88 81 0 chr4 15698460 15698745 -168589917 - AluSc SINE Alu -1 308 1 678 313 16 0 chr4 15698751 15698933 -168589729 - MIR SINE MIR -74 188 4 2019 161 0 0 chr4 15698954 15699265 -168589397 - AluSx SINE Alu -1 311 1 22 0 0 0 chr4 15699273 15699295 -168589367 + AT_rich Low_complexity Low_complexity 1 22 0 284 260 53 65 chr4 15699750 15699919 -168588743 - L1ME LINE L1 -268 5853 5687 1186 265 122 3 chr4 15699929 15700291 -168588371 + MLT1I LTR MaLR 3 407 -2 266 276 121 29 chr4 15700299 15700473 -168588189 - L1ME LINE L1 -500 5666 5477 1988 110 0 15 chr4 15702069 15702341 -168586321 - AluSq SINE Alu -45 268 1 316 249 18 91 chr4 15702765 15702930 -168585732 + L1ME4a LINE L1 5530 5682 -439 3006 101 12 0 chr4 15702949 15703366 -168585296 - MER83 LTR ERV1 -26 422 1 219 36 0 0 chr4 15703506 15703534 -168585128 + (TG)n Simple_repeat Simple_repeat 2 29 0 412 150 124 93 chr4 15703561 15703754 -168584908 + L1ME4a LINE L1 5882 6080 -41 185 214 71 0 chr4 15704674 15704716 -168583946 - MIR SINE MIR 0 262 218 764 281 35 4 chr4 15705231 15705462 -168583200 - L1ME3A LINE L1 -7 6163 5926 1966 93 64 4 chr4 15705594 15705874 -168582788 + AluSg SINE Alu 1 297 -13 1096 164 0 0 chr4 15705902 15706061 -168582601 + FRAM SINE Alu 1 159 -7 569 141 0 0 chr4 15706703 15706781 -168581881 - AluJ/FLAM SINE Alu -233 79 2 2053 90 3 40 chr4 15707296 15707597 -168581065 - AluY SINE Alu -21 290 1 817 250 45 45 chr4 15707964 15708316 -168580346 - SVA Other Other -573 813 462 2890 229 25 21 chr4 15709863 15710896 -168577766 - L1PA15-16 LINE L1 -3117 3732 2694 2133 169 0 3 chr4 15710915 15711252 -168577410 + MER75 DNA T2_type 6 341 -173 25 0 0 0 chr4 15711550 15711575 -168577087 + AT_rich Low_complexity Low_complexity 1 25 0 238 364 93 0 chr4 15712732 15712872 -168575790 + MIR SINE MIR 108 260 -2 489 363 28 4 chr4 15712889 15713140 -168575522 - MIR SINE MIR 0 262 6 370 302 251 15 chr4 15715204 15715535 -168573127 - MLT1I LTR MaLR 0 409 1 30 45 0 0 chr4 15715552 15715596 -168573066 + AT_rich Low_complexity Low_complexity 1 44 0 1683 246 197 3 chr4 15716227 15716791 -168571871 - L1M3e LINE L1 -5297 1733 1061 31 26 0 0 chr4 15717254 15717292 -168571370 + AT_rich Low_complexity Low_complexity 1 38 0 1898 192 97 8 chr4 15717743 15718134 -168570528 - MSTA LTR MaLR 0 428 3 2362 191 62 42 chr4 15718136 15718655 -168570007 - MSTA-int LTR MaLR 0 1651 1123 1202 50 0 0 chr4 15719002 15719141 -168569521 + MER85 DNA T2_type 1 139 0 250 195 274 71 chr4 15720350 15720429 -168568233 + MIR SINE MIR 117 179 -83 1108 170 85 122 chr4 15720429 15720805 -168567857 - MLT1A1 LTR MaLR 0 365 4 250 195 274 71 chr4 15720805 15720838 -168567824 + MIR SINE MIR 179 252 -10 32 43 0 0 chr4 15721061 15721107 -168567555 + AT_rich Low_complexity Low_complexity 1 46 0 203 262 66 16 chr4 15721442 15721503 -168567159 - MIR SINE MIR -72 190 127 5955 108 3 21 chr4 15721945 15722429 -168566233 - THE1-int LTR MaLR -737 843 379 1755 135 0 4 chr4 15722429 15722681 -168565981 + AluSc SINE Alu 50 300 -9 5955 108 3 21 chr4 15722681 15723050 -168565612 - THE1-int LTR MaLR -1201 379 5 2117 107 72 9 chr4 15723053 15723372 -168565290 - MLT2A2 LTR ERVL -5 448 110 454 288 22 84 chr4 15723713 15723939 -168564723 + MIR SINE MIR 30 241 -21 1862 214 80 78 chr4 15725263 15725716 -168562946 - L1MC/D LINE L1 -743 5403 4953 1842 179 0 10 chr4 15725716 15726029 -168562633 + AluJb SINE Alu 3 312 0 1862 214 80 78 chr4 15726029 15726737 -168561925 - L1MC/D LINE L1 -1193 4953 4404 2194 96 6 13 chr4 15726869 15727182 -168561480 + AluY SINE Alu 1 311 0 1008 142 25 0 chr4 15728581 15728743 -168559919 + L1M1 LINE L1 22 187 -7378 2006 144 3 0 chr4 15728969 15729267 -168559395 + AluSx SINE Alu 1 299 -13 535 220 15 45 chr4 15729520 15729534 -168559128 + MIR SINE MIR 27 40 -222 632 216 22 30 chr4 15729534 15729668 -168558994 - MER94 DNA DNA -1 133 1 535 220 15 45 chr4 15729668 15729785 -168558877 + MIR SINE MIR 40 154 -108 407 291 142 79 chr4 15730254 15730635 -168558027 + L2 LINE L2 2898 3302 -11 359 361 83 25 chr4 15730724 15731048 -168557614 + L2 LINE L2 1072 1414 -1900 278 260 70 83 chr4 15731511 15731668 -168556994 - MIR3 SINE MIR -16 192 44 480 164 0 14 chr4 15731709 15731782 -168556880 - FRAM/FAM SINE Alu -110 66 1 7868 67 3 9 chr4 15732032 15733007 -168555655 + LTR5 LTR ERVK 1 969 0 187 200 0 25 chr4 15733354 15733394 -168555268 - MER5A DNA MER1_type -115 74 36 261 329 0 0 chr4 15733571 15733650 -168555012 + L2 LINE L2 3184 3262 -10 416 180 205 16 chr4 15735051 15735173 -168553489 + MIR SINE MIR 112 256 -6 1871 91 8 0 chr4 15737210 15737464 -168551198 - L1MA2 LINE L1 -1 6303 6048 531 207 212 43 chr4 15738229 15738456 -168550206 - L1MC4a LINE L1 -400 7460 7174 1850 166 0 13 chr4 15738456 15738758 -168549904 + AluJb SINE Alu 2 299 -13 531 207 212 43 chr4 15738758 15738831 -168549831 - L1MC4a LINE L1 -686 7174 7115 435 222 10 0 chr4 15739844 15739945 -168548717 - MIR SINE MIR -68 140 34 411 351 75 41 chr4 15739951 15740338 -168548324 + L2 LINE L2 2824 3223 -49 2344 108 12 122 chr4 15740406 15740580 -168548082 + HSMAR2 DNA Mariner 2 193 -1109 1866 168 0 7 chr4 15740580 15740878 -168547784 + AluJb SINE Alu 1 296 -16 2344 108 12 122 chr4 15740878 15740964 -168547698 + HSMAR2 DNA Mariner 193 287 -1015 2362 72 7 0 chr4 15740964 15741255 -168547407 - AluSg SINE Alu -17 293 1 2344 108 12 122 chr4 15741255 15741476 -168547186 + HSMAR2 DNA Mariner 287 431 -871 28 61 0 0 chr4 15741476 15741525 -168547137 + AT_rich Low_complexity Low_complexity 1 49 0 32 43 0 0 chr4 15741749 15741795 -168546867 + AT_rich Low_complexity Low_complexity 1 46 0 429 213 11 11 chr4 15743547 15743641 -168545021 + MLT2C1 LTR ERVL 29 122 -275 2050 129 14 14 chr4 15743732 15744026 -168544636 + AluSx SINE Alu 2 295 -17 1388 139 52 36 chr4 15744031 15744283 -168544379 + MLT2C1 LTR ERVL 142 397 0 922 301 86 10 chr4 15745705 15746091 -168542571 - MLT1J2 LTR MaLR 0 450 36 194 265 0 0 chr4 15746226 15746260 -168542402 - L2 LINE L2 -29 3243 3210 870 154 122 0 chr4 15747770 15747926 -168540736 + FRAM SINE Alu 1 172 -4 3883 173 45 48 chr4 15748069 15748644 -168540018 - Charlie1a DNA MER1_type -1326 1435 863 868 231 0 0 chr4 15748644 15748804 -168539858 - L1PB4 LINE L1 -7 6149 5990 3883 173 45 48 chr4 15748804 15749121 -168539541 - Charlie1a DNA MER1_type -1898 863 546 1261 179 4 45 chr4 15749123 15749369 -168539293 + AluJo SINE Alu 1 236 -76 227 214 0 0 chr4 15749387 15749429 -168539233 - Charlie1a DNA MER1_type -918 537 496 198 0 0 0 chr4 15749429 15749451 -168539211 + (TA)n Simple_repeat Simple_repeat 2 23 0 943 198 153 36 chr4 15749552 15749800 -168538862 - AluJo SINE Alu -35 277 1 1812 221 119 7 chr4 15749808 15750255 -168538407 - Charlie1a DNA MER1_type -958 497 1 204 81 0 54 chr4 15750359 15750396 -168538266 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 255 303 154 53 chr4 15750508 15750696 -168537966 - MIR SINE MIR 0 262 56 1934 112 0 0 chr4 15751581 15751839 -168536823 - AluSx SINE Alu -54 258 1 2217 96 0 0 chr4 15752594 15752902 -168535760 + AluSg SINE Alu 1 308 0 318 250 0 0 chr4 15753096 15753168 -168535494 - L1M4 LINE L1 -2461 3685 3614 2222 85 4 0 chr4 15753274 15753581 -168535081 + AluY SINE Alu 1 308 0 376 181 60 0 chr4 15755217 15755300 -168533362 - LTR16C LTR ERVL 0 491 404 187 289 21 62 chr4 15755300 15755397 -168533265 + MER5A DNA MER1_type 69 161 -28 205 311 14 14 chr4 15755758 15755832 -168532830 - L2 LINE L2 -555 2759 2686 289 308 0 56 chr4 15756999 15757142 -168531520 - MIR SINE MIR -5 257 123 250 295 47 39 chr4 15757544 15757673 -168530989 - MIR SINE MIR -11 251 122 226 264 14 0 chr4 15758034 15758106 -168530556 - LTR66 LTR ERVL -159 451 379 1730 98 150 11 chr4 15758126 15758392 -168530270 + AluSg1 SINE Alu 1 303 -6 233 233 11 0 chr4 15760291 15760381 -168528281 + CT-rich Low_complexity Low_complexity 2 92 0 2178 118 0 0 chr4 15760914 15761211 -168527451 - AluSx SINE Alu -15 297 1 623 208 66 56 chr4 15762582 15762779 -168525883 - L1ME LINE L1 -460 5661 5463 2192 107 7 3 chr4 15763307 15763605 -168525057 + AluSq SINE Alu 1 299 -14 231 36 0 0 chr4 15763607 15763635 -168525027 + (GA)n Simple_repeat Simple_repeat 2 29 0 660 251 284 22 chr4 15763654 15764013 -168524649 + MLT1J LTR MaLR 14 466 -45 312 230 95 40 chr4 15764036 15764162 -168524500 - MIR SINE MIR -90 172 40 1215 139 4 94 chr4 15764850 15765095 -168523567 - AluJb SINE Alu -5 307 85 374 282 0 57 chr4 15765103 15765227 -168523435 + L2 LINE L2 3172 3288 -25 285 98 0 0 chr4 15765228 15765269 -168523393 + (TGAA)n Simple_repeat Simple_repeat 2 42 0 234 185 0 56 chr4 15765303 15765357 -168523305 - LTR67 LTR ERVL -506 51 1 1071 54 0 0 chr4 15765774 15765903 -168522759 - AluSg/x SINE Alu -12 300 172 261 341 110 16 chr4 15765909 15766091 -168522571 - MIR SINE MIR -9 253 55 578 307 95 45 chr4 15766379 15766842 -168521820 + L1ME LINE L1 5339 5824 -297 1038 180 0 6 chr4 15767344 15767527 -168521135 - AluJb SINE Alu -1 311 130 2012 139 7 10 chr4 15767547 15767848 -168520814 - AluSx SINE Alu -12 300 1 30 45 0 0 chr4 15768012 15768056 -168520606 + AT_rich Low_complexity Low_complexity 1 44 0 1568 187 0 18 chr4 15768078 15768383 -168520279 + AluJb SINE Alu 7 306 0 413 299 48 7 chr4 15769334 15769481 -168519181 + L1MC4a LINE L1 5742 5894 -1914 2225 109 3 0 chr4 15771226 15771520 -168517142 - AluSq SINE Alu -18 295 1 582 101 0 101 chr4 15771597 15771696 -168516966 - MSTA LTR MaLR 0 428 340 1621 98 197 203 chr4 15771729 15772418 -168516244 - pTR5 LTR ERV1 -158 2025 57 231 235 0 0 chr4 15772418 15772469 -168516193 - LTR30 LTR ERV1 -670 52 2 * 1820 126 114 6 chr4 15772469 15772781 -168515881 - MSTA LTR MaLR -82 346 1 1486 226 55 30 chr4 15772816 15773254 -168515408 + L1ME1 LINE L1 5703 6146 -20 239 214 29 14 chr4 15773242 15773312 -168515350 + L1ME LINE L1 5799 5869 -252 * 30 0 0 0 chr4 15773357 15773387 -168515275 + AT_rich Low_complexity Low_complexity 1 30 0 1806 172 76 11 chr4 15773387 15773741 -168514921 - LOR1a LTR ERV1 -120 377 1 239 294 88 57 chr4 15773930 15774124 -168514538 + L2 LINE L2 2860 3059 -213 253 268 72 58 chr4 15775058 15775196 -168513466 + L2 LINE L2 2620 2759 -555 1965 132 35 0 chr4 15775239 15775527 -168513135 + AluSx SINE Alu 1 298 -14 585 293 105 21 chr4 15775862 15776101 -168512561 + MIR SINE MIR 2 260 -2 516 282 20 0 chr4 15776182 15776331 -168512331 - MIR SINE MIR -26 236 85 183 318 15 30 chr4 15776437 15776503 -168512159 + L2 LINE L2 3248 3312 -1 1852 153 6 26 chr4 15776895 15777208 -168511454 + L1MC1 LINE L1 6027 6333 0 207 0 0 0 chr4 15777478 15777501 -168511161 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 450 0 0 0 chr4 15778456 15778506 -168510156 + (TG)n Simple_repeat Simple_repeat 2 51 0 423 214 0 0 chr4 15778800 15778931 -168509731 + GA-rich Low_complexity Low_complexity 1 131 0 1722 156 3 14 chr4 15778983 15779266 -168509396 - AluSx SINE Alu -32 280 1 281 308 29 122 chr4 15779333 15779505 -168509157 - L2 LINE L2 -188 3084 2929 23 68 0 0 chr4 15779543 15779587 -168509075 + AT_rich Low_complexity Low_complexity 1 44 0 427 222 44 0 chr4 15779760 15779850 -168508812 - MER58B DNA MER1_type -4 337 244 254 233 50 17 chr4 15779884 15779944 -168508718 + MER58B DNA MER1_type 244 305 -36 1194 211 64 0 chr4 15780491 15780766 -168507896 + MER58B DNA MER1_type 37 329 -12 2451 148 20 36 chr4 15781065 15781504 -168507158 + MSTB1 LTR MaLR 1 432 0 925 238 57 51 chr4 15781511 15781826 -168506836 - LTR16C LTR ERVL 0 491 175 1298 154 24 8 chr4 15781872 15782118 -168506544 + MER45R DNA AcHobo 712 961 -620 2143 124 32 42 chr4 15783128 15783507 -168505155 - THE1C LTR MaLR 0 375 1 665 203 89 19 chr4 15783604 15783762 -168504900 - MER63 DNA MER1_type 0 1060 892 2161 189 52 61 chr4 15783767 15784403 -168504259 + MER45R DNA AcHobo 952 1581 0 1656 308 84 37 chr4 15784459 15785245 -168503417 - ERVL LTR ERVL -2621 3143 2308 1303 203 125 28 chr4 15785245 15785604 -168503058 - MSTD LTR MaLR 0 396 3 1656 308 84 37 chr4 15785604 15785713 -168502949 - ERVL LTR ERVL -3456 2308 2206 648 279 32 16 chr4 15785766 15785956 -168502706 - ERVL LTR ERVL -3677 2087 1895 1032 316 76 62 chr4 15786275 15786582 -168502080 - ERVL LTR ERVL -3569 1427 1126 1684 173 7 23 chr4 15786582 15786888 -168501774 - AluJo SINE Alu -11 301 1 1032 316 76 62 chr4 15786888 15787628 -168501034 - ERVL LTR ERVL -3870 1126 365 1212 297 36 8 chr4 15787858 15788245 -168500417 - LTR16C LTR ERVL -92 399 2 192 77 0 0 chr4 15788298 15788324 -168500338 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2487 110 14 22 chr4 15788608 15788973 -168499689 - L1MA1 LINE L1 -6 6296 5935 229 122 0 0 chr4 15788973 15789014 -168499648 - AluSq SINE Alu -4 299 259 1650 118 0 0 chr4 15789014 15789235 -168499427 - AluSq SINE Alu -91 222 2 578 98 0 0 chr4 15789236 15789318 -168499344 - L1MA1 LINE L1 -354 5948 5867 1501 196 3 27 chr4 15789470 15789802 -168498860 + MER33 DNA MER1_type 1 324 0 246 311 44 44 chr4 15789860 15789950 -168498712 - L2 LINE L2 -47 3225 3136 228 167 62 73 chr4 15790426 15790522 -168498140 - L1MA5A LINE L1 -133 6164 6070 379 203 12 18 chr4 15790522 15790685 -168497977 + (TA)n Simple_repeat Simple_repeat 1 162 0 964 286 140 22 chr4 15790998 15791301 -168497361 - L2 LINE L2 0 3313 3047 2027 96 4 0 chr4 15791301 15791561 -168497101 - AluSp SINE Alu -14 299 39 964 286 140 22 chr4 15791561 15791770 -168496892 - L2 LINE L2 -266 3047 2741 247 242 67 0 chr4 15791851 15792016 -168496646 + (TAAA)n Simple_repeat Simple_repeat 4 179 0 308 158 40 89 chr4 15792627 15792728 -168495934 - LTR33 LTR ERVL -3 518 423 1223 223 99 60 chr4 15793712 15794038 -168494624 - L1MC4a LINE L1 -1736 6072 5721 2367 100 0 0 chr4 15794038 15794347 -168494315 - AluSg SINE Alu 0 310 2 1223 223 99 60 chr4 15794347 15794486 -168494176 - L1MC4a LINE L1 -2087 5721 5589 802 238 117 47 chr4 15795725 15796126 -168492536 + MER34C LTR ERV1 1 435 -160 349 240 100 28 chr4 15796114 15796292 -168492370 + MER34 LTR ERV1 405 542 0 * 2234 96 0 0 chr4 15796546 15796851 -168491811 - AluSp SINE Alu 0 307 3 669 169 7 0 chr4 15796921 15797057 -168491605 - L1MA7 LINE L1 0 6291 6155 1998 144 0 69 chr4 15797057 15797398 -168491264 - L1PA16 LINE L1 -4 6162 5839 1223 192 51 25 chr4 15797403 15797707 -168490955 - L1MA7 LINE L1 -73 6229 5903 262 339 27 9 chr4 15797892 15798004 -168490658 + MIR SINE MIR 11 124 -138 432 319 0 7 chr4 15798252 15798387 -168490275 + MIR SINE MIR 119 252 -10 342 275 12 31 chr4 15798387 15798547 -168490115 + CT-rich Low_complexity Low_complexity 2 158 0 2833 195 47 5 chr4 15798838 15799429 -168489233 - L1MB7 LINE L1 -9 6175 5560 287 161 218 23 chr4 15799429 15799516 -168489146 + L2 LINE L2 3210 3313 0 1545 170 35 28 chr4 15799590 15799902 -168488760 - AluJb SINE Alu 0 314 1 1371 111 0 5 chr4 15799942 15800160 -168488502 - AluSp SINE Alu 0 314 98 221 256 0 77 chr4 15800674 15800752 -168487910 + L2 LINE L2 3201 3272 0 2183 87 33 3 chr4 15800829 15801128 -168487534 + AluSg SINE Alu 1 308 -2 285 281 11 22 chr4 15801150 15801239 -168487423 + (CATA)n Simple_repeat Simple_repeat 1 88 0 30 69 0 0 chr4 15801317 15801375 -168487287 + AT_rich Low_complexity Low_complexity 1 58 0 2243 149 58 28 chr4 15801435 15801933 -168486729 - L1MA9 LINE L1 -231 6081 5692 24 0 0 0 chr4 15802115 15802139 -168486523 + AT_rich Low_complexity Low_complexity 1 24 0 225 222 67 59 chr4 15802284 15802419 -168486243 + L1ME4a LINE L1 5983 6118 -3 3170 167 56 12 chr4 15802566 15803140 -168485522 + L1MC1 LINE L1 5724 6322 -11 485 295 77 22 chr4 15803550 15803733 -168484929 + MLT1K LTR MaLR 28 220 -368 216 0 0 0 chr4 15803784 15803808 -168484854 + (TG)n Simple_repeat Simple_repeat 2 25 0 651 257 26 66 chr4 15803811 15804037 -168484625 + MIR SINE MIR 9 225 -37 1779 250 160 20 chr4 15804038 15804914 -168483748 + L2 LINE L2 2298 3310 -3 195 274 32 0 chr4 15804960 15805022 -168483640 - L2 LINE L2 -4 3268 3205 198 0 0 0 chr4 15805698 15805720 -168482942 + (A)n Simple_repeat Simple_repeat 1 22 0 2285 99 0 3 chr4 15806220 15806513 -168482149 - AluSc SINE Alu -17 292 1 996 135 0 0 chr4 15806698 15806831 -168481831 - AluSq/x SINE Alu -180 133 1 2825 22 0 9 chr4 15807391 15807706 -168480956 - AluYb8 SINE Alu -6 312 1 261 270 7 102 chr4 15808185 15808322 -168480340 - L2 LINE L2 -6 3307 3184 23 86 0 0 chr4 15808581 15808639 -168480023 + AT_rich Low_complexity Low_complexity 1 58 0 2173 121 7 0 chr4 15808752 15809050 -168479612 - AluSx SINE Alu -12 300 1 2179 93 18 0 chr4 15809334 15809637 -168479025 + AluSx SINE Alu 1 308 0 245 319 31 38 chr4 15809697 15809857 -168478805 - MIR SINE MIR -13 249 91 340 260 52 0 chr4 15809934 15810011 -168478651 + L2 LINE L2 3233 3313 0 286 309 81 0 chr4 15810094 15810230 -168478432 - MIR SINE MIR -33 229 83 446 285 145 21 chr4 15810533 15810726 -168477936 + L1MC4a LINE L1 5493 5709 -2099 354 300 42 32 chr4 15810729 15810919 -168477743 + L1MC4a LINE L1 5744 5935 -1873 225 0 0 0 chr4 15810919 15810944 -168477718 + (TC)n Simple_repeat Simple_repeat 2 26 0 293 250 196 25 chr4 15811603 15811807 -168476855 - L2 LINE L2 -199 3073 2835 664 297 66 40 chr4 15811954 15812334 -168476328 - L2 LINE L2 -625 2689 2300 320 374 0 0 chr4 15812339 15812478 -168476184 + L2 LINE L2 917 1055 -2259 1239 158 36 43 chr4 15812478 15812783 -168475879 + AluJb SINE Alu 49 312 0 302 264 255 35 chr4 15812789 15812842 -168475820 + L2 LINE L2 1053 1093 -2221 2322 153 5 13 chr4 15812842 15813235 -168475427 + MLT1B LTR MaLR 1 390 0 302 264 255 35 chr4 15813235 15813522 -168475140 + L2 LINE L2 1093 1468 -1846 1004 93 0 105 chr4 15813617 15813789 -168474873 + AluJb SINE Alu 66 219 -93 1759 283 135 40 chr4 15813804 15814807 -168473855 + L2 LINE L2 1626 2785 -528 6786 76 25 0 chr4 15814807 15816169 -168472493 + L1PA10 LINE L1 4784 6168 0 1759 283 135 40 chr4 15816169 15816442 -168472220 + L2 LINE L2 2785 3031 -282 829 231 108 0 chr4 15816597 15816800 -168471862 - MIR SINE MIR 0 262 38 210 298 53 90 chr4 15816807 15816995 -168471667 - L2 LINE L2 -228 3044 2864 263 234 0 47 chr4 15818286 15818350 -168470312 - L1ME2 LINE L1 -139 6025 5965 409 242 129 0 chr4 15818735 15818859 -168469803 - L1MC4a LINE L1 -1946 5862 5723 458 268 63 8 chr4 15818866 15818993 -168469669 - L2 LINE L2 0 3313 3180 503 266 133 67 chr4 15818996 15819417 -168469245 - L1MC4a LINE L1 -415 5706 5258 441 54 0 0 chr4 15819430 15819486 -168469176 + (CA)n Simple_repeat Simple_repeat 1 56 0 313 371 13 39 chr4 15819688 15819740 -168468922 - MLT1H1-int LTR MaLR -847 524 472 1843 123 54 0 chr4 15819740 15820008 -168468654 + AluSx SINE Alu 1 286 -26 207 0 0 0 chr4 15820008 15820031 -168468631 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 313 371 13 39 chr4 15820038 15820214 -168468448 - MLT1H1-int LTR MaLR -899 472 302 2032 152 47 32 chr4 15820286 15820693 -168467969 - MLT2D LTR ERVL 0 414 2 824 272 124 53 chr4 15820746 15821239 -168467423 - MLT1H1 LTR MaLR 0 555 28 318 219 149 18 chr4 15821385 15821499 -168467163 + L2 LINE L2 3185 3313 0 261 316 82 10 chr4 15822416 15822514 -168466148 + L2 LINE L2 3156 3260 -12 2293 96 0 3 chr4 15823689 15823982 -168464680 + AluSc SINE Alu 1 292 -17 4791 105 20 112 chr4 15824683 15825588 -168463074 - LTR12 LTR ERV1 0 826 5 1966 159 107 39 chr4 15825609 15826168 -168462494 - pTR5 LTR ERV1 -1099 1339 743 803 200 171 0 chr4 15826230 15826400 -168462262 - MER45C DNA AcHobo -5 948 750 2509 150 50 11 chr4 15826589 15827030 -168461632 - LTR22A LTR ERVK 0 458 1 301 292 71 0 chr4 15827104 15827217 -168461445 - MER117 DNA MER1_type -44 153 33 1088 193 131 103 chr4 15827631 15828067 -168460595 - LTR37B LTR ERV1 -11 457 10 759 243 22 0 chr4 15828074 15828259 -168460403 - L2 LINE L2 -4 3309 3121 305 207 30 40 chr4 15828282 15828433 -168460229 - LTR37B LTR ERV1 -81 387 187 2380 157 11 39 chr4 15828438 15828878 -168459784 + MSTC LTR MaLR 1 428 0 408 311 30 0 chr4 15828878 15829010 -168459652 - L2 LINE L2 -264 3049 2914 558 43 0 0 chr4 15829011 15829080 -168459582 + (TCTCCC)n Simple_repeat Simple_repeat 5 73 0 5387 68 29 53 chr4 15829086 15830052 -168458610 + SVA Other Other 50 866 -520 1542 73 11 25 chr4 15830080 15830355 -168458307 + SVA Other Other 596 866 -520 6252 74 15 63 chr4 15830374 15831376 -168457286 + SVA Other Other 433 1386 0 231 36 0 0 chr4 15831390 15831418 -168457244 + (GAAAA)n Simple_repeat Simple_repeat 4 31 0 943 244 71 76 chr4 15831455 15832032 -168456630 - L1MC5 LINE L1 -48 7913 7340 216 167 30 45 chr4 15832032 15832098 -168456564 + L2 LINE L2 1952 2016 -1298 279 193 0 0 chr4 15832104 15832161 -168456501 + L2 LINE L2 2218 2274 -1040 1041 274 50 6 chr4 15832566 15832909 -168455753 - L2 LINE L2 -614 2700 2343 1399 182 0 82 chr4 15832910 15833201 -168455461 + Tigger7 DNA MER2_type 1 267 -466 513 162 20 20 chr4 15833199 15833298 -168455364 + Tigger7 DNA MER2_type 2393 2491 0 * 399 206 0 21 chr4 15833302 15833399 -168455263 - L2 LINE L2 -1002 2312 2218 725 244 81 37 chr4 15833405 15833676 -168454986 - L2 LINE L2 -1298 2016 1734 238 167 12 60 chr4 15834408 15834492 -168454170 - L1ME4a LINE L1 -1 6120 6041 32 26 0 0 chr4 15835381 15835420 -168453242 + AT_rich Low_complexity Low_complexity 1 39 0 799 291 142 14 chr4 15835690 15836120 -168452542 - L1MC4a LINE L1 -1910 5898 5414 253 262 33 33 chr4 15836190 15836312 -168452350 - L1ME4a LINE L1 -298 5872 5751 1942 176 86 32 chr4 15836475 15836917 -168451745 - MLT1C LTR MaLR -1 466 1 300 240 13 0 chr4 15836922 15836997 -168451665 - MLT1L LTR MaLR 0 615 540 853 146 0 0 chr4 15837007 15837130 -168451532 - FLAM_C SINE Alu -20 123 1 295 247 140 11 chr4 15837135 15837228 -168451434 - MLT1L LTR MaLR -69 546 442 254 219 0 89 chr4 15837371 15837477 -168451185 - MLT1J LTR MaLR -332 179 108 852 300 115 15 chr4 15837589 15838347 -168450315 - L1ME4a LINE L1 -754 5392 4746 2247 219 68 28 chr4 15838364 15838656 -168450006 - L1ME1 LINE L1 -202 5964 5685 3955 119 28 2 chr4 15838656 15839221 -168449441 + LTR19B LTR ERV1 1 580 0 2247 219 68 28 chr4 15839221 15839573 -168449089 - L1ME1 LINE L1 -481 5685 5294 12193 158 40 31 chr4 15839574 15841422 -168447240 + L1MA5 LINE L1 2849 4723 -1553 1775 145 52 0 chr4 15841422 15841779 -168446883 - AluSx SINE Alu 0 371 1 12193 158 40 31 chr4 15841779 15842591 -168446071 + L1MA5 LINE L1 4723 5526 -750 3991 116 24 22 chr4 15842598 15843230 -168445432 - L1PA16 LINE L1 -9 6157 5525 4526 147 30 10 chr4 15843232 15843999 -168444663 + L1MA5 LINE L1 5517 6298 -2 400 223 37 79 chr4 15844006 15844221 -168444441 - L1ME1 LINE L1 -830 5316 5111 680 275 20 93 chr4 15844226 15844622 -168444040 + L2 LINE L2 2947 3313 0 212 321 156 0 chr4 15845377 15845486 -168443176 + MIR SINE MIR 117 242 -20 1871 213 62 38 chr4 15845946 15846476 -168442186 - MER90 LTR ERV1 0 614 72 272 311 146 9 chr4 15847876 15848095 -168440567 + MIR SINE MIR 13 261 -1 316 327 0 0 chr4 15848276 15848377 -168440285 + MIR3 SINE MIR 67 167 -41 358 286 60 54 chr4 15848379 15848547 -168440115 - MER5B DNA MER1_type -9 169 1 431 187 13 0 chr4 15849707 15849782 -168438880 - MER5A DNA MER1_type 0 189 114 525 209 27 9 chr4 15849787 15849897 -168438765 - MLT1C LTR MaLR -354 113 2 5891 211 27 25 chr4 15849900 15850573 -168438089 - L1M4 LINE L1 -713 5465 4795 1540 256 36 34 chr4 15850573 15851097 -168437565 - LTR45 LTR ERV1 0 525 1 5891 211 27 25 chr4 15851097 15851350 -168437312 - L1M4 LINE L1 -1383 4795 4544 2285 96 0 13 chr4 15851350 15851653 -168437009 + AluSg SINE Alu 1 299 -11 5891 211 27 25 chr4 15851653 15852365 -168436297 - L1M4 LINE L1 -1634 4544 3830 12605 97 11 14 chr4 15852365 15853729 -168434933 - L1PA8 LINE L1 -4 6168 4814 2400 103 0 0 chr4 15853729 15854039 -168434623 - AluSg SINE Alu 0 310 1 12605 97 11 14 chr4 15854039 15855303 -168433359 - L1PA8 LINE L1 -1358 4814 3548 25 51 0 0 chr4 15855390 15855429 -168433233 + AT_rich Low_complexity Low_complexity 1 39 0 204 206 0 0 chr4 15855914 15855948 -168432714 + (TAG)n Simple_repeat Simple_repeat 1 34 0 184 298 0 106 chr4 15856023 15856127 -168432535 - MIR SINE MIR -80 182 90 371 269 56 82 chr4 15856413 15856681 -168431981 - MIR SINE MIR 0 262 2 680 112 0 0 chr4 15856712 15856801 -168431861 + L1PA10 LINE L1 10 98 -6363 * 23083 147 28 45 chr4 15856797 15857938 -168430724 + L1PA10 LINE L1 308 1466 -5017 2537 65 21 0 chr4 15857938 15858276 -168430386 + L1PA7 LINE L1 5810 6154 0 23083 147 28 45 chr4 15858276 15863230 -168425432 + L1PA10 LINE L1 1466 6459 -24 30 0 0 0 chr4 15863250 15863280 -168425382 + AT_rich Low_complexity Low_complexity 1 30 0 346 221 76 87 chr4 15863551 15863616 -168425046 + MER112 DNA MER1_type 1 65 -195 180 0 0 0 chr4 15863616 15863636 -168425026 + (CA)n Simple_repeat Simple_repeat 2 21 0 346 221 76 87 chr4 15863636 15863742 -168424920 + MER112 DNA MER1_type 65 170 -90 2307 153 36 10 chr4 15864083 15864500 -168424162 - MSTB1 LTR MaLR -4 428 1 268 148 23 80 chr4 15864888 15864976 -168423686 + T-rich Low_complexity Low_complexity 1 83 0 503 318 140 42 chr4 15865320 15865394 -168423268 - L1MC/D LINE L1 -2050 5758 5693 351 0 0 0 chr4 15865394 15865433 -168423229 + (CA)n Simple_repeat Simple_repeat 1 39 0 503 318 140 42 chr4 15865433 15865558 -168423104 - L1MC/D LINE L1 -2115 5693 5582 816 134 0 63 chr4 15865558 15865700 -168422962 + FLAM_C SINE Alu 1 133 0 503 318 140 42 chr4 15865700 15865949 -168422713 - L1MC/D LINE L1 -2226 5582 5265 540 260 115 4 chr4 15865949 15866184 -168422478 - MIR SINE MIR 0 262 2 5056 150 36 15 chr4 15866836 15866953 -168421709 - L1MA7 LINE L1 0 6291 6178 2066 141 0 3 chr4 15866953 15867250 -168421412 - AluJb SINE Alu -16 296 1 5056 150 36 15 chr4 15867250 15868141 -168420521 - L1MA7 LINE L1 -113 6178 5262 6408 122 15 17 chr4 15868160 15868334 -168420328 - L1MA2 LINE L1 0 7723 7550 1420 86 68 32 chr4 15868334 15868555 -168420107 + MER30 DNA MER1_type 1 229 -1 6408 122 15 17 chr4 15868555 15869754 -168418908 - L1MA2 LINE L1 -173 7550 6357 * 14424 127 88 10 chr4 15869730 15872276 -168416386 - L1MA2 LINE L1 -3930 3635 891 646 278 35 26 chr4 15873556 15873786 -168414876 - MIR SINE MIR -2 260 29 2714 140 19 13 chr4 15873829 15874294 -168414368 - L1MA5A LINE L1 -2 6295 5828 2345 112 0 0 chr4 15874300 15874612 -168414050 - AluSx SINE Alu 0 312 1 976 119 8 0 chr4 15874612 15874746 -168413916 - AluSq/x SINE Alu -178 135 1 191 111 0 28 chr4 15874907 15874943 -168413719 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 1390 205 35 49 chr4 15875039 15875409 -168413253 - MLT1A1 LTR MaLR 0 365 1 440 294 24 8 chr4 15875482 15875608 -168413054 - MIR SINE MIR -115 147 20 378 281 9 9 chr4 15875772 15875886 -168412776 + MIR SINE MIR 82 195 -67 23 0 0 0 chr4 15876277 15876300 -168412362 + AT_rich Low_complexity Low_complexity 1 23 0 318 301 157 6 chr4 15877668 15877834 -168410828 + MIR SINE MIR 72 262 0 383 298 120 0 chr4 15878253 15878346 -168410316 - MER5A DNA MER1_type 0 189 109 2406 97 0 0 chr4 15878346 15878657 -168410005 - AluY SINE Alu 0 311 1 383 298 120 0 chr4 15878657 15878721 -168409941 - MER5A DNA MER1_type -80 109 13 28 48 0 0 chr4 15879960 15880002 -168408660 + AT_rich Low_complexity Low_complexity 1 42 0 41142 29 22 1 chr4 15880481 15886507 -168402155 + L1HS LINE L1 1 6155 0 252 0 0 0 chr4 15886530 15886558 -168402104 + (A)n Simple_repeat Simple_repeat 1 28 0 467 292 37 51 chr4 15888078 15888157 -168400505 - MIR SINE MIR -64 144 111 487 127 13 0 chr4 15888157 15888236 -168400426 - MADE1 DNA Mariner 0 80 1 467 292 37 51 chr4 15888236 15888345 -168400317 - MIR SINE MIR -97 111 2 486 243 89 57 chr4 15888541 15888891 -168399771 - L1M4 LINE L1 -2870 3276 2916 1675 173 36 10 chr4 15888959 15889260 -168399402 + AluJb SINE Alu 1 309 -3 194 371 0 0 chr4 15889385 15889447 -168399215 + MIR SINE MIR 85 146 -62 317 282 8 26 chr4 15890551 15890668 -168397994 + (CATA)n Simple_repeat Simple_repeat 2 116 0 2005 145 0 35 chr4 15890672 15891016 -168397646 - MER7A DNA MER2_type -16 330 1 1752 62 9 4 chr4 15891737 15891962 -168396700 - AluY SINE Alu -3 308 83 2287 92 9 0 chr4 15892594 15892911 -168395751 - L1PA13 LINE L1 -19 6144 5825 1739 167 0 11 chr4 15892972 15893242 -168395420 + AluJo SINE Alu 1 267 -45 202 28 28 28 chr4 15893260 15893296 -168395366 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1954 163 54 32 chr4 15893412 15893950 -168394712 - MLT2A2 LTR ERVL 0 554 1 472 316 0 0 chr4 15894283 15894419 -168394243 + MIR SINE MIR 119 254 -8 193 0 61 30 chr4 15894422 15894455 -168394207 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 2412 82 0 0 chr4 15895354 15895657 -168393005 - AluSc SINE Alu -6 303 1 2955 61 35 5 chr4 15896160 15896301 -168392361 - L1PA6 LINE L1 0 6154 6019 180 0 0 0 chr4 15896301 15896321 -168392341 + (TCCC)n Simple_repeat Simple_repeat 1 20 0 2955 61 35 5 chr4 15896321 15896575 -168392087 - L1PA6 LINE L1 -135 6019 5747 247 278 144 0 chr4 15896727 15896824 -168391838 + L2 LINE L2 3191 3301 -12 5950 133 34 15 chr4 15897477 15897648 -168391014 + L1MA4A LINE L1 4603 4769 -1534 2103 124 0 0 chr4 15897648 15897939 -168390723 + AluSc SINE Alu 13 303 -6 5950 133 34 15 chr4 15897939 15899126 -168389536 + L1MA4A LINE L1 4769 6012 -291 405 0 0 0 chr4 15899126 15899171 -168389491 + (TG)n Simple_repeat Simple_repeat 1 45 0 5950 133 34 15 chr4 15899171 15899461 -168389201 + L1MA4A LINE L1 6012 6295 -8 424 213 20 87 chr4 15899522 15899672 -168388990 + MER104 DNA Tc2 38 177 -3 348 265 123 18 chr4 15899711 15899881 -168388781 - L1MC4a LINE L1 -1898 5910 5723 500 191 55 0 chr4 15899890 15900000 -168388662 + L1MC1 LINE L1 6217 6332 -1 403 226 7 82 chr4 15900041 15900152 -168388510 - MLT1H LTR MaLR -405 144 45 2716 95 14 0 chr4 15900152 15900522 -168388140 + THE1C LTR MaLR 1 375 0 403 226 7 82 chr4 15900522 15900556 -168388106 - MLT1H LTR MaLR -504 45 10 250 409 7 14 chr4 15900559 15900701 -168387961 - L2 LINE L2 -565 2749 2609 321 283 101 31 chr4 15901381 15901540 -168387122 + MIR SINE MIR 2 171 -91 353 268 176 20 chr4 15901647 15901800 -168386862 + MIR SINE MIR 22 198 -64 617 321 67 57 chr4 15901805 15902281 -168386381 - MLT1J LTR MaLR -15 496 16 2445 72 19 0 chr4 15902910 15903217 -168385445 + AluSp SINE Alu 1 313 0 2202 113 10 0 chr4 15904509 15904809 -168383853 + AluSq SINE Alu 1 303 -10 424 216 18 45 chr4 15905017 15905128 -168383534 - MER81 DNA DNA -5 109 2 297 328 89 6 chr4 15905142 15905306 -168383356 + MIR3 SINE MIR 70 257 -5 457 347 26 15 chr4 15906237 15906477 -168382185 + MIR SINE MIR 17 262 0 36 0 0 0 chr4 15906602 15906638 -168382024 + AT_rich Low_complexity Low_complexity 1 36 0 519 65 77 24 chr4 15906638 15906806 -168381856 + (TTATA)n Simple_repeat Simple_repeat 4 180 0 * 676 57 86 0 chr4 15906778 15907058 -168381604 + (TA)n Simple_repeat Simple_repeat 1 304 0 504 128 26 0 chr4 15907074 15907152 -168381510 + AluSc SINE Alu 214 293 -16 939 194 23 60 chr4 15907152 15907368 -168381294 - LTR8A LTR ERV1 -243 484 277 1200 140 0 0 chr4 15907482 15907660 -168381002 + MER41C LTR ERV1 377 554 0 3081 145 108 13 chr4 15909024 15909568 -168379094 + LTR9 LTR ERV1 1 596 -16 256 176 14 27 chr4 15909685 15909759 -168378903 + CT-rich Low_complexity Low_complexity 1 73 0 1127 277 135 60 chr4 15909861 15910077 -168378585 + HAL1 LINE L1 35 233 -2274 2206 134 71 3 chr4 15910077 15910442 -168378220 + MLT1B LTR MaLR 1 390 0 1127 277 135 60 chr4 15910442 15910973 -168377689 + HAL1 LINE L1 233 838 -1669 649 281 70 40 chr4 15911059 15911358 -168377304 + MLT1I LTR MaLR 100 407 -2 1119 226 97 79 chr4 15911361 15911682 -168376980 + HAL1 LINE L1 836 1150 -1357 2720 35 3 0 chr4 15911682 15911992 -168376670 + AluY SINE Alu 1 311 0 1119 226 97 79 chr4 15911992 15912319 -168376343 + HAL1 LINE L1 1150 1496 -1011 1736 193 13 0 chr4 15912319 15912625 -168376037 + AluSx SINE Alu 1 310 -2 2469 108 68 22 chr4 15912997 15913406 -168375256 + MSTA LTR MaLR 1 428 0 227 352 0 0 chr4 15913563 15913654 -168375008 - MIR3 SINE MIR -36 172 82 741 169 0 0 chr4 15913963 15914081 -168374581 + FLAM_C SINE Alu 1 118 -15 2119 145 0 0 chr4 15914256 15914559 -168374103 - AluSx SINE Alu -9 303 1 639 178 40 7 chr4 15915108 15915260 -168373402 - LTR33 LTR ERVL -20 501 345 287 298 67 10 chr4 15915466 15915570 -168373092 - LTR33A LTR ERVL -353 170 61 1241 228 25 3 chr4 15915786 15916146 -168372516 + L1 LINE L1 3028 3395 -2751 205 364 45 0 chr4 15916148 15916258 -168372404 + MIR3 SINE MIR 77 191 -17 556 238 22 40 chr4 15916320 15916472 -168372190 - MLT1H1 LTR MaLR 0 555 401 1336 151 11 1 chr4 15916863 15917235 -168371427 + MSTB LTR MaLR 1 426 0 3610 204 24 62 chr4 15917470 15918478 -168370184 + LTR5 LTR ERVK 1 969 0 227 204 93 0 chr4 15918591 15918687 -168369975 - MIR3 SINE MIR -7 201 94 238 255 75 11 chr4 15919235 15919329 -168369333 - MIR SINE MIR -57 205 106 1485 260 106 48 chr4 15919337 15919998 -168368664 + L2 LINE L2 1466 2178 -1136 2269 123 0 0 chr4 15919998 15920298 -168368364 - AluSx SINE Alu -12 300 1 1485 260 106 48 chr4 15920298 15920393 -168368269 + L2 LINE L2 2178 2266 -1048 604 271 61 33 chr4 15920505 15920719 -168367943 - MIR SINE MIR -24 238 19 1843 212 44 24 chr4 15921382 15921877 -168366785 + MLT1D LTR MaLR 1 505 0 3130 208 44 17 chr4 15922496 15923199 -168365463 - MER72 LTR ERV1 0 722 1 351 335 57 31 chr4 15923714 15923908 -168364754 - L2 LINE L2 -55 3217 3019 414 0 0 0 chr4 15923969 15924015 -168364647 + (TG)n Simple_repeat Simple_repeat 1 46 0 264 77 0 0 chr4 15924015 15924054 -168364608 + (GA)n Simple_repeat Simple_repeat 2 40 0 327 141 87 54 chr4 15924065 15924157 -168364505 - MER113 DNA MER1_type? -307 214 120 1065 283 104 46 chr4 15924183 15924770 -168363892 - L1MC4a LINE L1 -1645 6163 5543 635 320 9 9 chr4 15925277 15925499 -168363163 - MIR SINE MIR 0 262 41 235 360 0 0 chr4 15925546 15925635 -168363027 - MIR SINE MIR -62 146 58 2023 117 24 14 chr4 15925833 15926124 -168362538 + AluSp SINE Alu 3 296 -17 536 316 52 5 chr4 15926395 15926607 -168362055 + MIR SINE MIR 8 229 -33 2409 60 0 0 chr4 15926815 15927145 -168361517 - AluY SINE Alu 0 330 1 2666 129 19 14 chr4 15927312 15927738 -168360924 + MSTA LTR MaLR 1 428 0 33 43 0 0 chr4 15927833 15927880 -168360782 + AT_rich Low_complexity Low_complexity 1 47 0 283 241 25 25 chr4 15928372 15928451 -168360211 + MLT1L LTR MaLR 1 79 -536 2392 86 7 0 chr4 15928492 15928794 -168359868 + AluSp SINE Alu 1 304 -9 1029 171 48 187 chr4 15929051 15929216 -168359446 - MSTD LTR MaLR -4 392 206 4183 104 32 3 chr4 15929216 15929801 -168358861 + LTR43 LTR ERV1 1 602 0 1029 171 48 187 chr4 15929801 15930090 -168358572 - MSTD LTR MaLR -190 206 1 347 287 144 29 chr4 15930090 15930253 -168358409 + MLT1J LTR MaLR 324 506 -5 255 272 0 19 chr4 15931226 15931329 -168357333 + L1MC4 LINE L1 6614 6714 -1328 250 278 199 28 chr4 15931351 15931527 -168357135 + MLT1L LTR MaLR 209 414 -201 703 263 5 56 chr4 15932248 15932461 -168356201 + MLT1A2 LTR MaLR 1 202 -172 621 192 70 13 chr4 15932472 15932628 -168356034 - L1ME3A LINE L1 -83 6087 5923 1879 248 39 4 chr4 15932735 15933219 -168355443 - L1ME3A LINE L1 -243 5927 5427 21 0 0 0 chr4 15934457 15934478 -168354184 + AT_rich Low_complexity Low_complexity 1 21 0 224 333 36 9 chr4 15934554 15934665 -168353997 + L2 LINE L2 3154 3267 -5 357 24 0 0 chr4 15934877 15934919 -168353743 + (TC)n Simple_repeat Simple_repeat 2 43 0 248 130 22 0 chr4 15935151 15935197 -168353465 + T-rich Low_complexity Low_complexity 4 50 0 195 42 0 0 chr4 15935216 15935240 -168353422 + (TTTC)n Simple_repeat Simple_repeat 3 26 0 343 191 0 0 chr4 15935240 15935308 -168353354 - MER113 DNA MER1_type? -220 301 234 24 67 0 0 chr4 15935359 15935404 -168353258 + AT_rich Low_complexity Low_complexity 1 45 0 1248 150 5 5 chr4 15935425 15935618 -168353044 + AluJo SINE Alu 1 193 -119 219 69 0 0 chr4 15935721 15935750 -168352912 + (A)n Simple_repeat Simple_repeat 1 29 0 884 64 0 0 chr4 15935827 15935936 -168352726 - MER57B LTR ERV1 -4 430 322 263 288 24 64 chr4 15936109 15936234 -168352428 + MIR SINE MIR 88 207 -55 192 346 26 0 chr4 15936282 15936360 -168352302 + L2 LINE L2 2760 2839 -475 2158 212 78 98 chr4 15936379 15937114 -168351548 - MER21B LTR ERV1 -104 759 40 670 296 144 15 chr4 15937168 15937577 -168351085 + L2 LINE L2 2851 3312 -1 2441 132 50 65 chr4 15937924 15938224 -168350438 - LTR45B LTR ERV1 0 489 197 1596 185 3 14 chr4 15938224 15938511 -168350151 - AluJo SINE Alu -20 292 9 2441 132 50 65 chr4 15938511 15938689 -168349973 - LTR45B LTR ERV1 -292 197 18 676 244 78 79 chr4 15938900 15939375 -168349287 - L1MC4 LINE L1 -29 8013 7463 1925 177 0 3 chr4 15939470 15939781 -168348881 - AluJb SINE Alu -2 310 1 421 203 0 0 chr4 15939879 15939958 -168348704 - MLT1D LTR MaLR 0 505 427 229 191 0 0 chr4 15939967 15940009 -168348653 - LTR45B LTR ERV1 -270 219 178 385 192 17 0 chr4 15940013 15940133 -168348529 + CT-rich Low_complexity Low_complexity 3 124 0 727 207 0 28 chr4 15940135 15940280 -168348382 - AluJb SINE Alu -13 299 159 1358 226 65 42 chr4 15940282 15940667 -168347995 - MLT1D LTR MaLR -105 400 7 938 290 90 36 chr4 15941399 15941865 -168346797 - L1MC4a LINE L1 -130 5991 5501 2087 127 10 20 chr4 15941916 15942216 -168346446 - AluSx SINE Alu -15 297 1 312 291 67 22 chr4 15942273 15942407 -168346255 + MIR3 SINE MIR 20 159 -49 2387 138 6 3 chr4 15942875 15943238 -168345424 + THE1B LTR MaLR 1 364 0 1372 278 99 35 chr4 15943292 15944081 -168344581 + L2 LINE L2 2348 3192 -121 321 279 174 6 chr4 15944353 15944514 -168344148 + MIR SINE MIR 59 246 -16 22 0 0 0 chr4 15944790 15944812 -168343850 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr4 15945003 15945028 -168343634 + GC_rich Low_complexity Low_complexity 1 25 0 238 312 38 32 chr4 15945268 15945425 -168343237 - MIR SINE MIR -12 250 93 1785 178 3 13 chr4 15945692 15946007 -168342655 - AluJo SINE Alu 0 312 1 2176 185 72 6 chr4 15946207 15946682 -168341980 - Charlie1b DNA MER1_type 0 523 18 2087 204 21 41 chr4 15946988 15947503 -168341159 + MLT1D LTR MaLR 1 505 0 2885 116 12 0 chr4 15947798 15948202 -168340460 - MSTA LTR MaLR 0 428 20 23 0 0 0 chr4 15948543 15948566 -168340096 + AT_rich Low_complexity Low_complexity 1 23 0 1258 221 12 4 chr4 15948566 15948820 -168339842 - AluJo SINE Alu -22 290 35 3928 160 66 6 chr4 15948976 15949657 -168339005 + MER72 LTR ERV1 1 722 0 204 329 12 12 chr4 15949933 15950015 -168338647 - L2 LINE L2 -5 3267 3186 193 272 196 0 chr4 15950078 15950170 -168338492 - L2 LINE L2 -8 3264 3155 669 317 87 24 chr4 15950322 15950748 -168337914 + L1MC4a LINE L1 5450 5902 -1906 985 209 90 0 chr4 15950961 15951195 -168337467 + MLT1B LTR MaLR 11 265 -125 527 220 8 42 chr4 15951712 15951830 -168336832 - MER81 DNA DNA 0 114 1 213 350 8 17 chr4 15951997 15952114 -168336548 - MIR SINE MIR -137 125 10 234 330 34 0 chr4 15952182 15952270 -168336392 - MIR SINE MIR -80 128 38 260 313 61 0 chr4 15952858 15952957 -168335705 + MIR SINE MIR 48 152 -110 1171 157 22 110 chr4 15953610 15953928 -168334734 - MER74A LTR ERVL 0 558 269 892 233 5 32 chr4 15954319 15954538 -168334124 - MER51C LTR ERV1 0 640 428 303 182 104 13 chr4 15954567 15954644 -168334018 - MER51C LTR ERV1 -211 429 346 486 260 70 45 chr4 15955085 15955120 -168333542 + MLT1I LTR MaLR 28 61 -348 4072 74 0 4 chr4 15955120 15955633 -168333029 - MER9 LTR ERVK 0 511 1 486 260 70 45 chr4 15955633 15955797 -168332865 + MLT1I LTR MaLR 61 232 -177 4435 139 23 20 chr4 15955921 15956663 -168331999 + Tigger2 DNA MER2_type 1 744 -1974 1304 127 101 13 chr4 15956716 15956953 -168331709 + Tigger2 DNA MER2_type 2461 2718 0 275 262 55 0 chr4 15956982 15957097 -168331565 - MIR SINE MIR -63 145 32 204 373 0 0 chr4 15957221 15957296 -168331366 + MIR SINE MIR 117 191 -71 277 321 84 70 chr4 15957364 15957663 -168330999 + L2 LINE L2 2877 3179 -93 1189 133 49 8 chr4 15958119 15958422 -168330240 - MER83B LTR ERV1 0 378 3 254 275 0 38 chr4 15958640 15958720 -168329942 + L2 LINE L2 3190 3266 -6 443 264 101 8 chr4 15958729 15958858 -168329804 + MER50 LTR ERV1 10 150 -584 919 103 0 0 chr4 15958922 15959058 -168329604 + AluSg/x SINE Alu 176 311 -1 1703 198 121 18 chr4 15959066 15959505 -168329157 + MER50 LTR ERV1 251 734 0 1800 147 3 27 chr4 15960848 15961202 -168327460 - MER4A LTR ERV1 0 664 261 585 134 21 10 chr4 15961202 15961299 -168327363 - MER4A LTR ERV1 -566 98 1 355 328 77 84 chr4 15961317 15961563 -168327099 + L2 LINE L2 1939 2185 -1129 2160 110 0 0 chr4 15961563 15961863 -168326799 - AluSq SINE Alu -13 300 1 355 328 77 84 chr4 15961863 15962059 -168326603 + L2 LINE L2 2185 2381 -933 1585 187 0 13 chr4 15962059 15962243 -168326419 - AluJb SINE Alu -1 311 126 225 0 0 0 chr4 15962243 15962268 -168326394 + (TG)n Simple_repeat Simple_repeat 2 26 0 279 0 0 0 chr4 15962276 15962307 -168326355 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1585 187 0 13 chr4 15962307 15962428 -168326234 - AluJb SINE Alu -193 119 1 355 328 77 84 chr4 15962428 15962802 -168325860 + L2 LINE L2 2381 2750 -564 1040 292 62 40 chr4 15962845 15963345 -168325317 + LTR33 LTR ERVL 1 511 -10 235 298 121 42 chr4 15963355 15963570 -168325092 + L2 LINE L2 2842 3073 -199 303 357 79 0 chr4 15963680 15963806 -168324856 + MIR SINE MIR 116 251 -11 307 297 61 135 chr4 15963995 15964119 -168324543 - L1MC/D LINE L1 -2095 5713 5612 1792 145 0 23 chr4 15964119 15964422 -168324240 - AluJo SINE Alu -16 296 1 307 297 61 135 chr4 15964422 15964526 -168324136 - L1MC/D LINE L1 -2196 5612 5502 481 240 168 89 chr4 15964711 15965066 -168323596 + LTR33A LTR ERVL 64 456 -67 1952 129 10 6 chr4 15965066 15965377 -168323285 - AluSq SINE Alu -1 312 1 481 240 168 89 chr4 15965377 15965425 -168323237 + LTR33A LTR ERVL 456 499 -24 466 281 16 8 chr4 15965462 15965590 -168323072 + L1MC/D LINE L1 5490 5618 -503 809 229 22 27 chr4 15965591 15965814 -168322848 + L1MC5 LINE L1 7704 7925 -36 1942 127 0 13 chr4 15965823 15966123 -168322539 + AluJo SINE Alu 1 296 -16 234 281 34 34 chr4 15966212 15966301 -168322361 + L1MC/D LINE L1 5703 5791 -2017 189 107 0 0 chr4 15966585 15966613 -168322049 + (TTCC)n Simple_repeat Simple_repeat 2 29 0 2096 109 0 0 chr4 15966621 15966915 -168321747 - AluY SINE Alu -17 294 1 2128 110 0 10 chr4 15967377 15967677 -168320985 - AluSx SINE Alu -15 297 1 304 318 32 37 chr4 15967755 15967982 -168320680 - MIR SINE MIR 0 262 36 418 228 228 65 chr4 15968021 15968197 -168320465 + MIR SINE MIR 8 227 -35 760 211 35 0 chr4 15968197 15968368 -168320294 - MER5B DNA MER1_type -1 177 1 418 228 228 65 chr4 15968368 15968406 -168320256 + MIR SINE MIR 227 257 -5 822 249 24 0 chr4 15969224 15969437 -168319225 + MER20 DNA MER1_type 1 218 -1 303 299 93 0 chr4 15969453 15969550 -168319112 - L2 LINE L2 -20 3252 3147 376 343 10 0 chr4 15970172 15970271 -168318391 - L2 LINE L2 -1 3271 3172 2445 127 11 8 chr4 15970286 15970649 -168318013 - THE1B LTR MaLR 0 364 1 2270 105 0 0 chr4 15971287 15971600 -168317062 + AluSq SINE Alu 1 313 0 509 283 95 3 chr4 15971871 15972092 -168316570 + MIR SINE MIR 18 256 -6 189 348 32 39 chr4 15972221 15972376 -168316286 - MIR SINE MIR -16 246 93 307 280 76 45 chr4 15972846 15972978 -168315684 + L2 LINE L2 3178 3313 0 677 306 122 28 chr4 15972989 15973342 -168315320 + L2 LINE L2 2928 3313 0 279 306 60 30 chr4 15974153 15974287 -168314375 + MIR SINE MIR 29 166 -96 365 309 0 0 chr4 15975826 15975920 -168312742 - L2 LINE L2 0 3272 3179 258 342 43 34 chr4 15976588 15976705 -168311957 - MIR3 SINE MIR -85 123 6 259 364 21 21 chr4 15977632 15977775 -168310887 - MIR3 SINE MIR -60 148 6 181 111 0 0 chr4 15977773 15977800 -168310862 + L2 LINE L2 3285 3311 -2 * 193 333 81 16 chr4 15978057 15978180 -168310482 + MIR SINE MIR 39 169 -93 488 235 111 92 chr4 15978489 15978706 -168309956 - Charlie8 DNA MER1_type -2152 265 45 483 186 6 22 chr4 15979328 15979511 -168309151 + (CA)n Simple_repeat Simple_repeat 1 180 0 255 114 0 0 chr4 15979532 15979576 -168309086 + (CA)n Simple_repeat Simple_repeat 2 45 0 242 347 12 24 chr4 15979581 15979748 -168308914 + L2 LINE L2 2872 3036 -236 778 175 88 16 chr4 15980290 15980484 -168308178 - L1MC3 LINE L1 -15 7770 7563 207 0 0 0 chr4 15980489 15980512 -168308150 + (TTA)n Simple_repeat Simple_repeat 2 24 0 2660 185 22 72 chr4 15980513 15981259 -168307403 - L1MC1 LINE L1 -7 6326 5656 894 200 43 9 chr4 15981258 15981468 -168307194 - L1MC3 LINE L1 -212 7573 7357 * 1760 80 34 42 chr4 15981987 15982251 -168306411 + AluY SINE Alu 34 295 -16 3070 128 11 68 chr4 15982454 15982683 -168305979 - L1PA16 LINE L1 -7 6159 5919 2042 130 0 0 chr4 15982683 15982984 -168305678 - AluSg SINE Alu -9 301 1 3070 128 11 68 chr4 15982984 15983317 -168305345 - L1PA16 LINE L1 -247 5919 5629 299 188 0 16 chr4 15983399 15983463 -168305199 - MER116 DNA Mariner 0 80 18 215 303 0 11 chr4 15983714 15983803 -168304859 + (CA)n Simple_repeat Simple_repeat 1 88 0 328 266 86 55 chr4 15984385 15984513 -168304149 - L2 LINE L2 -1 3271 3140 542 202 0 0 chr4 15984966 15985060 -168303602 - HERVL74 LTR ERVL -1612 4073 3980 1189 217 114 69 chr4 15985065 15985485 -168303177 - MSTB2 LTR MaLR -2 455 17 253 83 0 0 chr4 15985487 15985523 -168303139 - HERVL74 LTR ERVL -1710 3975 3940 519 216 9 0 chr4 15985571 15985682 -168302980 - HERVL74 LTR ERVL -2086 3599 3488 * 662 220 8 0 chr4 15985673 15985805 -168302857 - HERVL74 LTR ERVL -2345 3340 3208 * 813 272 51 0 chr4 15985802 15985997 -168302665 - HERVL74 LTR ERVL -3008 2677 2473 1303 224 101 7 chr4 15986919 15987227 -168301435 - MER2 DNA MER2_type -8 337 1 1314 251 85 27 chr4 15987229 15987675 -168300987 - MER74B LTR ERVL -93 529 58 352 339 128 11 chr4 15988281 15988461 -168300201 - MIR SINE MIR -56 206 6 2097 108 10 0 chr4 15988476 15988781 -168299881 + AluSq SINE Alu 1 308 -5 31 44 0 0 chr4 15988887 15988932 -168299730 + AT_rich Low_complexity Low_complexity 1 45 0 1405 178 37 11 chr4 15988937 15989229 -168299433 + AluSx SINE Alu 6 304 0 1500 198 25 7 chr4 15989229 15989512 -168299150 - AluJo SINE Alu -23 289 2 216 97 0 0 chr4 15990332 15990363 -168298299 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 751 175 0 0 chr4 15990363 15990483 -168298179 - FLAM_C SINE Alu -22 121 2 182 236 69 56 chr4 15990483 15990555 -168298107 - MIR SINE MIR -70 192 120 1350 110 0 5 chr4 15991218 15991418 -168297244 - L1PB1 LINE L1 0 6151 5953 2673 102 3 0 chr4 15991420 15991774 -168296888 - THE1A LTR MaLR 0 355 1 11712 95 12 12 chr4 15991774 15992533 -168296129 - THE1A-int LTR MaLR 0 1580 822 3001 126 11 17 chr4 15992533 15992994 -168295668 + LTR22A LTR ERVK 1 458 0 11712 95 12 12 chr4 15992994 15993814 -168294848 - THE1A-int LTR MaLR -757 823 1 2619 101 3 8 chr4 15993814 15994171 -168294491 - THE1A LTR MaLR 0 355 1 372 311 123 46 chr4 15994701 15995026 -168293636 + HERVL40 LTR ERVL 3021 3370 -2160 305 256 48 0 chr4 15996199 15996324 -168292338 - L1M4 LINE L1 -1128 5018 4888 1693 182 34 6 chr4 15996353 15996710 -168291952 - L1MB3 LINE L1 -15 6168 5802 463 224 41 71 chr4 15996758 15996854 -168291808 - MER5A DNA MER1_type -22 167 77 1936 131 0 3 chr4 15996854 15997145 -168291517 - AluSx SINE Alu -22 290 1 463 224 41 71 chr4 15997145 15997218 -168291444 - MER5A DNA MER1_type -112 77 3 252 252 153 38 chr4 15997357 15997488 -168291174 + MIR SINE MIR 47 192 -70 273 270 66 36 chr4 15997646 15997783 -168290879 + L2 LINE L2 3172 3312 -1 253 279 209 0 chr4 15997803 15997889 -168290773 - MER5B DNA MER1_type -1 177 74 694 246 11 17 chr4 15997889 15998068 -168290594 + MER5B DNA MER1_type 1 178 0 2297 75 3 0 chr4 15998113 15998405 -168290257 + AluSx SINE Alu 1 293 -19 1759 220 64 9 chr4 15998631 15999067 -168289595 + MLT1C LTR MaLR 6 465 -2 204 40 0 0 chr4 15999506 15999531 -168289131 + (A)n Simple_repeat Simple_repeat 1 25 0 1990 163 41 46 chr4 15999558 15999950 -168288712 + MLT1B LTR MaLR 1 390 0 333 203 68 68 chr4 16000033 16000196 -168288466 + HAL1b LINE L1 1186 1348 0 485 229 40 51 chr4 16000974 16001149 -168287513 - MER5B DNA MER1_type -4 174 2 22 35 0 0 chr4 16002889 16002918 -168285744 + AT_rich Low_complexity Low_complexity 1 29 0 246 32 0 0 chr4 16003370 16003401 -168285261 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1211 227 0 25 chr4 16003402 16003684 -168284978 - AluJo SINE Alu -37 275 1 1898 134 17 0 chr4 16003693 16003984 -168284678 - AluSx SINE Alu -16 296 1 297 324 205 0 chr4 16004402 16004617 -168284045 + L2 LINE L2 2871 3149 -164 2159 124 0 0 chr4 16004617 16004916 -168283746 - AluSx SINE Alu -13 299 1 297 324 205 0 chr4 16004916 16004959 -168283703 + L2 LINE L2 3149 3182 -131 513 237 35 0 chr4 16005227 16005341 -168283321 - MLT1J LTR MaLR -330 181 64 767 211 74 26 chr4 16005591 16005781 -168282881 + MER58A DNA MER1_type 26 224 0 311 302 60 7 chr4 16006075 16006224 -168282438 - L2 LINE L2 -1408 1906 1750 2290 85 0 0 chr4 16006281 16006576 -168282086 - AluSc SINE Alu -14 295 1 21 0 0 0 chr4 16006582 16006603 -168282059 + AT_rich Low_complexity Low_complexity 1 21 0 182 54 0 54 chr4 16008460 16008497 -168280165 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 2040 103 40 4 chr4 16008497 16008769 -168279893 - AluSx SINE Alu -1 318 1 207 0 0 0 chr4 16008829 16008852 -168279810 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 808 194 0 71 chr4 16008852 16009022 -168279640 - FAM SINE Alu -17 158 1 2170 93 16 38 chr4 16009047 16009360 -168279302 - AluSx SINE Alu -1 311 6 33 66 0 0 chr4 16009365 16009426 -168279236 + AT_rich Low_complexity Low_complexity 1 61 0 241 274 0 0 chr4 16009441 16009503 -168279159 + (TA)n Simple_repeat Simple_repeat 1 62 0 791 194 85 18 chr4 16009533 16009792 -168278870 + MER2 DNA MER2_type 1 345 0 1479 208 98 16 chr4 16011139 16011505 -168277157 - MSTD LTR MaLR 0 396 1 294 290 93 55 chr4 16011657 16011840 -168276822 - MER117 DNA MER1_type -1 196 7 1738 154 52 4 chr4 16012071 16012343 -168276319 + AluSx SINE Alu 1 285 -27 390 250 100 7 chr4 16012414 16012554 -168276108 + Charlie8 DNA MER1_type 37 189 -2228 273 75 0 0 chr4 16012961 16013001 -168275661 + (CA)n Simple_repeat Simple_repeat 2 41 0 * 303 28 0 0 chr4 16013000 16013036 -168275626 + (TC)n Simple_repeat Simple_repeat 2 37 0 845 143 0 0 chr4 16013529 16013655 -168275007 - FLAM_C SINE Alu -9 134 9 273 240 69 115 chr4 16014054 16014114 -168274548 - MIR SINE MIR -49 213 152 2348 91 0 3 chr4 16014114 16014411 -168274251 - AluSg SINE Alu -14 296 1 273 240 69 115 chr4 16014411 16014542 -168274120 - MIR SINE MIR -110 152 33 249 303 67 0 chr4 16015687 16015776 -168272886 + LTR16A LTR ERVL 10 104 -346 2257 108 0 0 chr4 16016493 16016790 -168271872 - AluY SINE Alu -14 297 1 1294 225 117 9 chr4 16016824 16017149 -168271513 + MLT1A1 LTR MaLR 3 362 -3 579 66 0 0 chr4 16017870 16017946 -168270716 + (GGAA)n Simple_repeat Simple_repeat 1 76 0 223 159 0 0 chr4 16018569 16018613 -168270049 - L2 LINE L2 -1 3312 3269 26 0 0 0 chr4 16018819 16018845 -168269817 + AT_rich Low_complexity Low_complexity 1 26 0 216 0 0 0 chr4 16019499 16019523 -168269139 + (T)n Simple_repeat Simple_repeat 1 24 0 320 269 31 39 chr4 16019577 16019707 -168268955 - MIR SINE MIR -31 231 103 2336 78 0 0 chr4 16019839 16020153 -168268509 - AluY SINE Alu 0 314 1 2346 92 0 10 chr4 16020181 16020485 -168268177 + AluSg SINE Alu 1 301 -9 469 247 88 53 chr4 16020655 16020882 -168267780 + Charlie8 DNA MER1_type 31 265 -2152 273 299 106 53 chr4 16021884 16022148 -168266514 - L2 LINE L2 -33 3280 3003 207 284 68 0 chr4 16022154 16022242 -168266420 - MIR SINE MIR 0 262 169 347 329 39 21 chr4 16022447 16022681 -168265981 - L2 LINE L2 -350 2964 2727 3070 126 93 22 chr4 16023365 16023857 -168264805 + MER1A DNA MER1_type 1 527 0 1937 139 71 6 chr4 16023914 16024237 -168264425 - MER2 DNA MER2_type 0 344 1 193 242 81 71 chr4 16024250 16024349 -168264313 + MIR SINE MIR 95 194 -68 275 316 103 6 chr4 16025362 16025536 -168263126 - MER91A DNA MER1_type -5 191 1 465 263 98 40 chr4 16025958 16026278 -168262384 + MLT1I LTR MaLR 82 389 -20 2668 46 0 0 chr4 16026766 16027068 -168261594 - AluY SINE Alu -9 302 1 1002 219 54 5 chr4 16027264 16027469 -168261193 - MER58A DNA MER1_type 0 224 10 210 258 15 45 chr4 16028974 16029040 -168259622 - MIR SINE MIR -93 169 106 530 257 143 0 chr4 16029063 16029238 -168259424 - MIR SINE MIR -61 201 2 1052 213 117 46 chr4 16029551 16029875 -168258787 + MER66A LTR ERV1 27 373 -105 1388 186 60 70 chr4 16030359 16030545 -168258117 + L1MB5 LINE L1 5782 5968 -206 2521 68 0 10 chr4 16030545 16030854 -168257808 + AluSc SINE Alu 1 306 -3 1388 186 60 70 chr4 16030854 16031064 -168257598 + L1MB5 LINE L1 5968 6174 0 855 133 0 23 chr4 16031364 16031492 -168257170 + FLAM_C SINE Alu 2 126 -7 30 27 0 0 chr4 16031492 16031529 -168257133 + AT_rich Low_complexity Low_complexity 1 37 0 491 188 116 0 chr4 16032693 16032805 -168255857 + L1MB5 LINE L1 6044 6168 -6 261 310 62 0 chr4 16033942 16034055 -168254607 + MER117 DNA MER1_type 41 160 -37 723 185 0 0 chr4 16034188 16034334 -168254328 + GA-rich Low_complexity Low_complexity 1 146 0 220 339 60 48 chr4 16034536 16034704 -168253958 + L2 LINE L2 2921 3090 -182 232 310 23 0 chr4 16034945 16035032 -168253630 + MIR SINE MIR 152 240 -22 2254 96 3 0 chr4 16035121 16035438 -168253224 + AluSx SINE Alu 1 318 0 277 163 0 25 chr4 16036142 16036222 -168252440 + (TA)n Simple_repeat Simple_repeat 2 79 0 2033 140 3 16 chr4 16036349 16036657 -168252005 - AluSx SINE Alu -8 304 1 214 273 171 11 chr4 16036686 16036873 -168251789 - MIR SINE MIR -14 248 32 21 0 0 0 chr4 16037436 16037457 -168251205 + AT_rich Low_complexity Low_complexity 1 21 0 1945 109 13 60 chr4 16037615 16037917 -168250745 - AluSx SINE Alu -19 293 6 2508 61 0 0 chr4 16038082 16038378 -168250284 + AluY SINE Alu 1 296 -15 193 342 84 21 chr4 16039845 16040035 -168248627 - L2 LINE L2 -555 2759 2558 461 320 143 41 chr4 16040209 16041276 -168247386 - L2 LINE L2 -993 2321 1146 446 248 0 58 chr4 16041850 16041971 -168246691 + MER58C DNA MER1_type 102 215 0 600 324 8 19 chr4 16042074 16042333 -168246329 - L1ME LINE L1 -303 5818 5563 707 181 16 0 chr4 16042561 16042688 -168245974 + FLAM_C SINE Alu 1 129 -4 350 64 0 0 chr4 16043523 16043570 -168245092 - MADE1 DNA Mariner -33 47 1 534 208 20 7 chr4 16043698 16043847 -168244815 + CT-rich Low_complexity Low_complexity 4 154 0 2254 104 7 3 chr4 16043856 16044153 -168244509 - AluSx SINE Alu -12 300 3 423 0 0 0 chr4 16044388 16044435 -168244227 + (TG)n Simple_repeat Simple_repeat 1 47 0 237 65 0 0 chr4 16045063 16045094 -168243568 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 395 322 101 0 chr4 16046798 16046997 -168241665 + MIR SINE MIR 36 254 -8 587 147 0 78 chr4 16047564 16047680 -168240982 - U6 snRNA snRNA 0 107 1 364 295 145 24 chr4 16048278 16048485 -168240177 - MIR SINE MIR -3 259 28 23 0 0 0 chr4 16048503 16048526 -168240136 + AT_rich Low_complexity Low_complexity 1 23 0 2132 110 30 13 chr4 16048550 16048850 -168239812 + AluSx SINE Alu 1 305 -7 1725 125 61 51 chr4 16049398 16049693 -168238969 - AluJb SINE Alu -14 298 1 220 143 102 0 chr4 16050242 16050291 -168238371 + L2 LINE L2 3248 3301 -12 2291 93 33 0 chr4 16050887 16051189 -168237473 - AluSx SINE Alu 0 312 1 2627 61 0 3 chr4 16051481 16051791 -168236871 + AluY SINE Alu 1 309 -2 792 211 77 29 chr4 16052534 16052743 -168235919 + MER20 DNA MER1_type 1 219 0 258 262 9 93 chr4 16053284 16053391 -168235271 - MIR3 SINE MIR -21 187 90 781 102 87 0 chr4 16053450 16053577 -168235085 + MER85 DNA T2_type 2 139 0 202 307 20 130 chr4 16053741 16053956 -168234706 - L2 LINE L2 -52 3220 2983 2430 103 0 0 chr4 16053956 16054268 -168234394 + AluSx SINE Alu 1 312 0 202 307 20 130 chr4 16054268 16054300 -168234362 - L2 LINE L2 -289 2983 2949 2073 130 0 0 chr4 16054300 16054608 -168234054 + AluSx SINE Alu 1 308 0 202 307 20 130 chr4 16054608 16054703 -168233959 - L2 LINE L2 -323 2949 2914 1554 213 74 98 chr4 16055563 16056238 -168232424 + L1MC4 LINE L1 7384 8042 0 2216 110 0 3 chr4 16056433 16056724 -168231938 + AluSx SINE Alu 3 292 -20 21 0 0 0 chr4 16056898 16056919 -168231743 + AT_rich Low_complexity Low_complexity 1 21 0 409 279 57 8 chr4 16057865 16057987 -168230675 + MIR SINE MIR 7 134 -128 1237 180 48 26 chr4 16058112 16058340 -168230322 + Tigger5 DNA MER2_type 1 233 -2090 447 161 0 54 chr4 16058333 16058426 -168230236 + Tigger5 DNA MER2_type 2235 2322 -1 * 243 0 0 0 chr4 16058764 16058791 -168229871 + (CA)n Simple_repeat Simple_repeat 2 28 0 268 274 78 10 chr4 16058825 16058927 -168229735 + MIR SINE MIR 42 150 -58 190 237 85 34 chr4 16060664 16060723 -168227939 + MIR SINE MIR 14 75 -187 647 152 203 19 chr4 16060739 16060897 -168227765 + MLT1B LTR MaLR 1 187 -203 514 189 8 8 chr4 16060953 16061075 -168227587 + GA-rich Low_complexity Low_complexity 3 124 0 216 273 18 0 chr4 16061130 16061185 -168227477 + MIR SINE MIR 98 153 -55 1017 193 11 21 chr4 16061799 16061986 -168226676 - MER58A DNA MER1_type -3 221 37 610 182 55 79 chr4 16062617 16062782 -168225880 - MER20 DNA MER1_type -57 162 2 279 140 0 0 chr4 16063570 16063620 -168225042 + (TG)n Simple_repeat Simple_repeat 1 50 0 285 29 0 0 chr4 16064599 16064633 -168224029 + (CA)n Simple_repeat Simple_repeat 2 35 0 355 229 101 9 chr4 16064795 16064904 -168223758 + L1ME3A LINE L1 5881 5999 -171 313 393 22 7 chr4 16065737 16065872 -168222790 + MIR3 SINE MIR 24 160 -48 243 0 0 0 chr4 16066190 16066217 -168222445 + (CA)n Simple_repeat Simple_repeat 2 28 0 763 216 0 8 chr4 16066927 16067061 -168221601 + FLAM_A SINE Alu 1 133 0 466 252 25 0 chr4 16067291 16067410 -168221252 - Charlie8 DNA MER1_type -2239 178 57 303 93 0 0 chr4 16068908 16068951 -168219711 + (TA)n Simple_repeat Simple_repeat 2 44 0 1879 55 0 0 chr4 16068951 16069171 -168219491 - L1PA5 LINE L1 -7 6147 5928 2622 38 0 0 chr4 16069171 16069487 -168219175 + L1P LINE L1 4907 5222 -924 293 263 26 0 chr4 16070122 16070198 -168218464 + MER116 DNA Mariner 3 80 0 183 80 0 0 chr4 16070875 16070900 -168217762 + (CCCCCA)n Simple_repeat Simple_repeat 1 25 0 324 64 0 0 chr4 16071846 16071893 -168216769 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 227 283 0 33 chr4 16072241 16072301 -168216361 + L2 LINE L2 3211 3268 -4 1627 134 278 18 chr4 16072525 16072860 -168215802 + MSTA LTR MaLR 5 426 -2 329 264 118 27 chr4 16073035 16073145 -168215517 + MIR SINE MIR 54 173 -89 3890 259 77 60 chr4 16073184 16074309 -168214353 + L1M1 LINE L1 11 1155 -6410 10091 147 18 4 chr4 16074311 16076489 -168212173 + L1M1 LINE L1 2049 4259 -3306 692 160 8 0 chr4 16076489 16076597 -168212065 + L1MA3 LINE L1 6181 6300 -5 486 283 116 5 chr4 16076633 16076831 -168211831 - MIR SINE MIR -7 255 36 250 292 105 13 chr4 16077297 16077427 -168211235 + MIR SINE MIR 6 142 -66 188 188 42 0 chr4 16077704 16077752 -168210910 + GA-rich Low_complexity Low_complexity 2 51 0 295 295 103 13 chr4 16079082 16079238 -168209424 - L2 LINE L2 0 3313 3144 346 227 280 67 chr4 16079238 16079388 -168209274 + MIR SINE MIR 81 262 0 317 198 74 0 chr4 16079800 16079881 -168208781 + LTR37B LTR ERV1 198 284 -184 5512 187 29 9 chr4 16079893 16081400 -168207262 + L1M1 LINE L1 16 1655 -5910 433 289 114 9 chr4 16082957 16083011 -168205651 + L1M1 LINE L1 4308 4355 -3210 1816 128 4 0 chr4 16083011 16083269 -168205393 + AluSx SINE Alu 43 301 -11 433 289 114 9 chr4 16083269 16083442 -168205220 + L1M1 LINE L1 4355 4559 -3006 454 284 14 21 chr4 16083762 16083903 -168204759 + MIR SINE MIR 8 147 -115 512 269 136 100 chr4 16083952 16084025 -168204637 + L1MC4a LINE L1 5532 5601 -2207 1625 152 4 4 chr4 16084025 16084282 -168204380 + AluJo SINE Alu 1 257 -55 512 269 136 100 chr4 16084282 16084789 -168203873 + L1MC4a LINE L1 5601 6133 -1675 1608 114 4 21 chr4 16084914 16085151 -168203511 - AluJb SINE Alu -13 299 67 203 228 193 0 chr4 16085226 16085283 -168203379 + L2 LINE L2 3246 3313 0 1950 176 143 14 chr4 16086257 16086488 -168202174 - MLT1C LTR MaLR 0 467 267 2509 52 3 3 chr4 16086488 16086795 -168201867 - AluY SINE Alu -4 307 1 1950 176 143 14 chr4 16086795 16086977 -168201685 - MLT1C LTR MaLR -200 267 1 290 212 45 0 chr4 16087447 16087513 -168201149 + L1ME4a LINE L1 5844 5912 -209 1888 223 65 80 chr4 16087582 16087920 -168200742 + L1MC5 LINE L1 7181 7522 -439 2051 118 7 0 chr4 16087920 16088208 -168200454 + AluSx SINE Alu 1 290 -22 1888 223 65 80 chr4 16088208 16088617 -168200045 + L1MC5 LINE L1 7522 7917 -44 2034 222 92 25 chr4 16088637 16089204 -168199458 + L1ME3A LINE L1 5554 6158 -12 30 0 0 0 chr4 16089204 16089234 -168199428 + AT_rich Low_complexity Low_complexity 1 30 0 1892 108 0 0 chr4 16089247 16089521 -168199141 + AluSq SINE Alu 33 306 0 543 163 0 20 chr4 16089521 16089619 -168199043 - MER5A DNA MER1_type -83 106 11 198 278 91 87 chr4 16089817 16090058 -168198604 + L2 LINE L2 2842 3083 -189 248 349 24 0 chr4 16090264 16090347 -168198315 + MIR SINE MIR 34 118 -144 1323 239 104 19 chr4 16090395 16090817 -168197845 + MLT1C LTR MaLR 8 465 -2 685 268 38 38 chr4 16090926 16091139 -168197523 - MIR SINE MIR -21 241 29 231 276 61 68 chr4 16091779 16091942 -168196720 + MIR SINE MIR 4 165 -97 * 576 219 73 0 chr4 16091939 16092076 -168196586 + MIR SINE MIR 31 177 -85 2696 163 24 24 chr4 16092819 16093322 -168195340 + LTR54 LTR ERV1 3 505 -5 2229 125 0 6 chr4 16093558 16093871 -168194791 + AluSx SINE Alu 2 312 0 244 216 72 82 chr4 16094197 16094294 -168194368 + MIR SINE MIR 68 163 -99 2064 165 29 63 chr4 16094325 16094738 -168193924 - MER57A LTR ERV1 0 403 5 602 179 0 17 chr4 16094783 16094900 -168193762 - MER57A-int LTR ERV1 -11 7526 7412 575 168 152 69 chr4 16094901 16095184 -168193478 - LTR54B LTR ERV1 -210 300 1 221 344 10 10 chr4 16095566 16095662 -168193000 - MIR SINE MIR -119 143 48 1448 207 18 84 chr4 16096036 16096427 -168192235 + MLT1A2 LTR MaLR 10 374 0 15344 159 34 21 chr4 16096786 16097372 -168191290 + L1MA3 LINE L1 1841 2418 -5147 4368 120 25 73 chr4 16097372 16097806 -168190856 - LTR8 LTR ERV1 0 691 304 1681 94 0 0 chr4 16097806 16098019 -168190643 - AluSg/x SINE Alu -15 295 83 4368 120 25 73 chr4 16098019 16098310 -168190352 - LTR8 LTR ERV1 -387 304 1 15344 159 34 21 chr4 16098310 16102330 -168186332 + L1MA3 LINE L1 2418 6521 -1044 2416 63 10 3 chr4 16102330 16102632 -168186030 - AluY SINE Alu -7 304 1 15344 159 34 21 chr4 16102632 16102877 -168185785 + L1MA3 LINE L1 6521 6761 -804 839 132 0 0 chr4 16102880 16102994 -168185668 + AluJb SINE Alu 5 118 -194 387 0 0 0 chr4 16103000 16103043 -168185619 + (TAA)n Simple_repeat Simple_repeat 2 44 0 6736 101 13 9 chr4 16103044 16104017 -168184645 + L1MA3 LINE L1 6748 7724 0 780 212 5 26 chr4 16104024 16104217 -168184445 + LTR37A LTR ERV1 235 423 -3 273 284 40 0 chr4 16104803 16104877 -168183785 - MER20 DNA MER1_type -83 136 60 236 196 20 0 chr4 16105036 16105087 -168183575 + Charlie8 DNA MER1_type 2356 2407 -10 332 301 118 0 chr4 16105119 16105255 -168183407 - MIR SINE MIR -58 204 53 288 303 83 23 chr4 16105904 16106036 -168182626 - MIR SINE MIR -12 250 111 280 284 11 53 chr4 16106077 16106172 -168182490 - MIR SINE MIR -20 242 152 407 301 124 0 chr4 16106194 16106307 -168182355 - L2 LINE L2 -23 3249 3123 1861 193 107 21 chr4 16106378 16106808 -168181854 - MLT1C LTR MaLR 0 467 1 392 343 29 15 chr4 16106812 16106949 -168181713 - MIR SINE MIR -120 142 4 360 236 179 0 chr4 16107223 16107363 -168181299 - L2 LINE L2 -266 3047 2883 2145 134 109 3 chr4 16108263 16108592 -168180070 - THE1B LTR MaLR 0 364 1 478 274 30 50 chr4 16108802 16109003 -168179659 + MIR SINE MIR 23 219 -43 306 184 238 54 chr4 16109741 16109888 -168178774 + LTR67 LTR ERVL 356 529 -28 391 178 52 44 chr4 16110113 16110248 -168178414 - MER96B DNA MER1_type? -238 179 44 282 293 81 16 chr4 16110306 16110429 -168178233 - L2 LINE L2 -1 3271 3141 540 258 0 8 chr4 16112081 16112209 -168176453 + L2 LINE L2 3187 3313 0 425 276 29 26 chr4 16112235 16112379 -168176283 + MIR SINE MIR 16 160 -62 1643 186 0 0 chr4 16112398 16112678 -168175984 + AluJb SINE Alu 1 280 -32 565 37 0 106 chr4 16112695 16112883 -168175779 + (GGA)n Simple_repeat Simple_repeat 3 170 0 211 119 71 0 chr4 16112885 16112927 -168175735 + GA-rich Low_complexity Low_complexity 2 46 0 308 315 73 45 chr4 16113026 16113204 -168175458 - L2 LINE L2 -5 3308 3126 259 294 144 39 chr4 16113277 16113430 -168175232 + MIR3 SINE MIR 32 200 -8 1989 139 45 12 chr4 16113786 16114123 -168174539 - MER7A DNA MER2_type 0 346 1 489 305 63 11 chr4 16114228 16114402 -168174260 + MIR SINE MIR 3 185 -77 407 338 149 14 chr4 16114756 16114978 -168173684 + MIR SINE MIR 5 256 -6 886 119 0 38 chr4 16115155 16115340 -168173322 + (GGGA)n Simple_repeat Simple_repeat 1 178 0 280 255 92 10 chr4 16115699 16115797 -168172865 - MIR SINE MIR -62 200 95 22 0 0 0 chr4 16115857 16115879 -168172783 + AT_rich Low_complexity Low_complexity 1 22 0 1513 204 0 7 chr4 16115879 16116163 -168172499 - AluJo SINE Alu -30 282 1 344 385 8 0 chr4 16116470 16116592 -168172070 + MIR3 SINE MIR 9 131 -77 301 259 53 61 chr4 16117118 16117249 -168171413 - MIR3 SINE MIR -33 175 46 188 180 40 20 chr4 16117276 16117326 -168171336 + MIR SINE MIR 50 100 -162 424 267 188 41 chr4 16117962 16118090 -168170572 + L2 LINE L2 2626 2734 -579 2175 152 98 0 chr4 16118090 16118478 -168170184 + MSTB LTR MaLR 1 426 0 424 267 188 41 chr4 16118478 16118895 -168169767 + L2 LINE L2 2734 3268 -45 307 257 20 47 chr4 16120096 16120244 -168168418 + L1ME4a LINE L1 5978 6121 0 491 273 96 43 chr4 16121191 16121378 -168167284 + MIR SINE MIR 48 244 -18 1366 146 55 49 chr4 16121512 16121820 -168166842 + AluJo SINE Alu 1 310 -2 974 276 166 18 chr4 16122322 16122757 -168165905 - L2 LINE L2 -1 3312 2814 1387 142 9 47 chr4 16124614 16124917 -168163745 + MLT1B LTR MaLR 1 345 -122 549 205 16 39 chr4 16124933 16125060 -168163602 - MER61D LTR ERV1 -17 484 361 535 167 167 0 chr4 16125658 16125766 -168162896 + MLT1B LTR MaLR 342 467 0 331 238 67 38 chr4 16125767 16125872 -168162790 - MIR SINE MIR -90 172 65 405 280 26 67 chr4 16126227 16126420 -168162242 - MIR SINE MIR -66 196 12 227 240 93 27 chr4 16126401 16126476 -168162186 - L2 LINE L2 -4 3268 3189 * 1452 160 27 0 chr4 16127264 16127527 -168161135 - L1MB5 LINE L1 0 6174 5905 571 243 40 7 chr4 16127820 16127968 -168160694 + MIR SINE MIR 80 232 -30 180 266 101 38 chr4 16127990 16128069 -168160593 - MIR SINE MIR -88 174 91 364 243 47 19 chr4 16128103 16128210 -168160452 - MIR SINE MIR -91 171 62 557 272 70 35 chr4 16129510 16129738 -168158924 - MIR SINE MIR -10 252 17 323 222 156 11 chr4 16131285 16131375 -168157287 - MIR SINE MIR -50 212 110 345 307 44 7 chr4 16131377 16131514 -168157148 - MLT1K LTR MaLR 0 588 447 201 200 67 0 chr4 16132023 16132068 -168156594 - L2 LINE L2 0 3313 3266 450 0 0 0 chr4 16132239 16132289 -168156373 + (CA)n Simple_repeat Simple_repeat 1 50 0 1685 178 0 29 chr4 16132526 16132841 -168155821 - AluJb SINE Alu -4 308 3 1759 126 0 60 chr4 16133556 16133911 -168154751 - AluSx SINE Alu 0 337 1 2208 104 0 3 chr4 16134358 16134667 -168153995 - AluSx SINE Alu -3 309 2 2022 224 143 15 chr4 16134691 16135424 -168153238 - L1M4 LINE L1 -1949 4197 3371 21 0 0 0 chr4 16135812 16135833 -168152829 + AT_rich Low_complexity Low_complexity 1 21 0 452 251 82 71 chr4 16136432 16136615 -168152047 - MLT1J LTR MaLR -49 462 278 373 250 35 42 chr4 16136636 16136780 -168151882 + MLT1A1 LTR MaLR 1 143 -222 * 594 199 8 69 chr4 16136758 16136889 -168151773 + MLT1A1 LTR MaLR 94 217 -157 737 225 47 12 chr4 16137575 16137744 -168150918 - MER45A DNA AcHobo 0 178 4 2271 215 53 55 chr4 16138233 16138778 -168149884 - MER77 LTR ERV1 -8 597 54 326 271 36 22 chr4 16138885 16139008 -168149654 - MIR SINE MIR -66 142 64 613 248 75 49 chr4 16139991 16140352 -168148310 - MLT1C LTR MaLR -96 371 5 292 279 67 29 chr4 16140353 16140457 -168148205 - L2 LINE L2 -28 3285 3178 2090 159 6 0 chr4 16140460 16140799 -168147863 + MER47A DNA MER2_type 1 341 -25 287 289 83 16 chr4 16140818 16140939 -168147723 - L2 LINE L2 -155 3158 3030 1541 138 54 4 chr4 16141104 16141364 -168147298 - MER47A DNA MER2_type -63 303 31 919 191 0 0 chr4 16141745 16141902 -168146760 - FRAM SINE Alu -5 161 5 1790 214 42 20 chr4 16142505 16142962 -168145700 + MLT1C LTR MaLR 1 467 0 1841 153 130 84 chr4 16144010 16144473 -168144189 - MER74A LTR ERVL -60 498 15 3510 186 60 3 chr4 16145657 16146351 -168142311 + L1MB8 LINE L1 5445 6178 0 3562 158 17 12 chr4 16146354 16146995 -168141667 + L1MC1 LINE L1 5677 6320 -13 1182 167 23 0 chr4 16146999 16147214 -168141448 + L1MA4 LINE L1 6035 6254 -46 4653 62 25 6 chr4 16147214 16148230 -168140432 + MER11A LTR ERVK 1 1266 0 252 106 0 0 chr4 16148230 16148277 -168140385 + L1MA4 LINE L1 6250 6296 -4 689 102 0 10 chr4 16148450 16148548 -168140114 + MER4A LTR ERV1 2 98 -566 1952 99 161 78 chr4 16148548 16148921 -168139741 + MER4A LTR ERV1 261 664 0 341 274 137 13 chr4 16148927 16149080 -168139582 - L1ME4a LINE L1 -254 5867 5696 218 354 0 0 chr4 16149125 16149207 -168139455 - MIR SINE MIR -10 252 171 1095 110 0 0 chr4 16149208 16149362 -168139300 + AluY SINE Alu 142 295 -16 488 329 25 6 chr4 16149372 16149533 -168139129 - MIR SINE MIR -89 173 10 354 313 61 38 chr4 16149562 16149875 -168138787 - L1ME4a LINE L1 -517 5604 5285 1913 125 0 4 chr4 16149952 16150233 -168138429 - AluSx SINE Alu -32 280 1 297 329 133 0 chr4 16151449 16151592 -168137070 + MIR SINE MIR 26 187 -75 346 222 118 19 chr4 16151793 16151914 -168136748 + MIR SINE MIR 4 124 -84 223 286 63 0 chr4 16152402 16152465 -168136197 + MIR SINE MIR 84 150 -112 2027 134 0 13 chr4 16152796 16153109 -168135553 - AluSx SINE Alu -3 309 1 249 164 73 18 chr4 16154139 16154194 -168134468 + MLT1K LTR MaLR 529 586 -2 189 299 65 56 chr4 16154302 16154409 -168134253 + L2 LINE L2 3161 3268 -4 367 319 44 19 chr4 16154492 16154698 -168133964 - MIR SINE MIR -57 205 1 46 78 0 0 chr4 16155708 16155810 -168132852 + AT_rich Low_complexity Low_complexity 1 102 0 353 274 112 27 chr4 16155939 16156262 -168132400 + L1ME4a LINE L1 5564 5993 -128 1921 115 0 14 chr4 16156274 16156562 -168132100 - L1PA14 LINE L1 -16 6145 5862 856 184 11 6 chr4 16156845 16157019 -168131643 + FRAM SINE Alu 1 167 -9 576 291 119 26 chr4 16157328 16157555 -168131107 + MIR SINE MIR 9 256 -6 2097 104 14 0 chr4 16157558 16157855 -168130807 + AluSx SINE Alu 1 301 -11 453 337 181 21 chr4 16158692 16159113 -168129549 + L2 LINE L2 2768 3259 -54 207 258 32 86 chr4 16159320 16159413 -168129249 + MIR SINE MIR 17 104 -104 197 189 113 0 chr4 16159573 16159626 -168129036 - MER5A DNA MER1_type -4 185 127 2427 68 0 0 chr4 16159630 16159922 -168128740 + AluSx SINE Alu 1 292 -20 657 228 15 0 chr4 16159936 16160072 -168128590 - MER5A DNA MER1_type -51 138 1 299 259 71 0 chr4 16160122 16160207 -168128455 - MIR SINE MIR -54 208 118 518 261 70 25 chr4 16160452 16160609 -168128053 + MIR SINE MIR 51 214 -48 299 206 82 0 chr4 16161086 16161159 -168127503 - L2 LINE L2 -1 3312 3234 494 254 136 41 chr4 16162543 16162956 -168125706 - MLT1J LTR MaLR -51 460 9 186 261 65 0 chr4 16163074 16163120 -168125542 - MIR3 SINE MIR -7 201 153 380 233 81 0 chr4 16163184 16163270 -168125392 + L2 LINE L2 3211 3303 -10 25 0 0 0 chr4 16165230 16165255 -168123407 + AT_rich Low_complexity Low_complexity 1 25 0 26 30 0 0 chr4 16165751 16165784 -168122878 + AT_rich Low_complexity Low_complexity 1 33 0 398 266 8 8 chr4 16166702 16166830 -168121832 - L1MA10 LINE L1 -8 6326 6199 851 141 7 22 chr4 16167160 16167295 -168121367 - FLAM_C SINE Alu -10 133 1 2547 57 0 0 chr4 16167850 16168148 -168120514 + AluY SINE Alu 1 298 -13 700 316 148 19 chr4 16168237 16168962 -168119700 + L2 LINE L2 2421 3248 -65 2349 92 7 0 chr4 16169548 16169852 -168118810 - AluSg SINE Alu -4 306 1 299 253 27 11 chr4 16170133 16170306 -168118356 + MIR SINE MIR 21 262 0 440 217 103 75 chr4 16170319 16170600 -168118062 - L1ME4a LINE L1 -247 5874 5586 1833 152 17 0 chr4 16170677 16170966 -168117696 - AluJo SINE Alu -13 299 6 265 306 173 33 chr4 16171011 16171347 -168117315 + L2 LINE L2 2853 3235 -78 235 206 110 41 chr4 16172320 16172393 -168116269 - L2 LINE L2 -9 3263 3186 193 202 173 19 chr4 16172656 16172760 -168115902 + L2 LINE L2 3096 3215 -98 2204 109 3 0 chr4 16175370 16175686 -168112976 - AluSq SINE Alu 0 317 1 424 161 0 0 chr4 16175763 16175825 -168112837 - AluSc SINE Alu -116 193 132 1065 74 0 0 chr4 16175976 16176111 -168112551 - AluY SINE Alu -7 304 170 490 262 189 9 chr4 16176206 16176439 -168112223 - L1ME LINE L1 -318 5803 5529 21 36 0 0 chr4 16177359 16177387 -168111275 + AT_rich Low_complexity Low_complexity 1 28 0 31 58 0 0 chr4 16177600 16177652 -168111010 + AT_rich Low_complexity Low_complexity 1 52 0 25 0 0 0 chr4 16178311 16178336 -168110326 + AT_rich Low_complexity Low_complexity 1 25 0 2055 102 60 0 chr4 16178991 16179274 -168109388 + AluSx SINE Alu 1 300 -12 297 303 81 0 chr4 16179276 16179375 -168109287 - L2 LINE L2 -14 3299 3193 974 180 40 0 chr4 16179613 16179841 -168108821 + L1MA4 LINE L1 6060 6296 -4 287 212 61 30 chr4 16180082 16180148 -168108514 + MIR SINE MIR 34 101 -107 287 299 118 16 chr4 16180176 16180303 -168108359 + MIR SINE MIR 93 232 -30 262 293 49 0 chr4 16181190 16181272 -168107390 + L2 LINE L2 3187 3272 0 1845 134 31 61 chr4 16181642 16182001 -168106661 - MER7A DNA MER2_type 0 346 1 225 0 0 0 chr4 16182319 16182362 -168106300 + (TG)n Simple_repeat Simple_repeat 1 68 0 225 0 0 0 chr4 16182362 16182387 -168106275 + (TG)n Simple_repeat Simple_repeat 2 26 0 1977 97 87 17 chr4 16184137 16184425 -168104237 - AluSx SINE Alu -4 308 1 2477 225 88 20 chr4 16186593 16187765 -168100897 - L1ME2 LINE L1 -13 6151 4901 643 145 176 57 chr4 16187765 16187928 -168100734 + Charlie1 DNA MER1_type 2508 2707 -54 2244 107 0 0 chr4 16187928 16188226 -168100436 - AluSq SINE Alu -15 298 1 643 145 176 57 chr4 16188226 16188289 -168100373 + Charlie1 DNA MER1_type 2707 2761 0 344 299 21 42 chr4 16188434 16188578 -168100084 - Charlie1a DNA MER1_type -1298 157 17 333 288 101 22 chr4 16188702 16188841 -168099821 + MIR SINE MIR 20 169 -93 321 259 62 0 chr4 16189696 16189777 -168098885 + L2 LINE L2 3227 3312 -1 2424 64 7 0 chr4 16191326 16191624 -168097038 + AluY SINE Alu 1 300 -11 556 276 182 30 chr4 16191887 16192151 -168096511 + L2 LINE L2 3008 3311 -2 * 631 255 95 45 chr4 16192146 16192389 -168096273 - MIR SINE MIR 0 262 8 2158 106 3 3 chr4 16193026 16193327 -168095335 - AluSx SINE Alu -11 301 1 325 200 106 0 chr4 16193802 16193887 -168094775 + MER5A DNA MER1_type 13 106 -83 986 288 129 2 chr4 16194579 16195083 -168093579 - L1MC4a LINE L1 -1885 5923 5356 542 261 118 49 chr4 16196943 16197146 -168091516 - MIR SINE MIR -26 236 20 360 0 0 0 chr4 16197548 16197588 -168091074 + (TTC)n Simple_repeat Simple_repeat 2 41 0 1055 69 0 0 chr4 16197590 16197720 -168090942 - AluSq/x SINE Alu -180 133 4 1916 129 14 11 chr4 16202290 16202577 -168086085 - AluJo SINE Alu -18 294 7 1812 177 3 10 chr4 16203019 16203318 -168085344 - AluJb SINE Alu -14 298 2 31 0 0 0 chr4 16204047 16204078 -168084584 + AT_rich Low_complexity Low_complexity 1 31 0 241 351 91 6 chr4 16204423 16204588 -168084074 - MIR SINE MIR -24 238 60 23 33 0 0 chr4 16204983 16205013 -168083649 + AT_rich Low_complexity Low_complexity 1 30 0 424 140 150 40 chr4 16206065 16206165 -168082497 + MLT1L LTR MaLR 2 112 -278 1833 142 31 3 chr4 16206174 16206499 -168082163 + MLT1B LTR MaLR 57 390 0 21 36 0 0 chr4 16207116 16207144 -168081518 + AT_rich Low_complexity Low_complexity 1 28 0 22 70 0 0 chr4 16210733 16210776 -168077886 + AT_rich Low_complexity Low_complexity 1 43 0 230 214 0 0 chr4 16210919 16210961 -168077701 + LTR67 LTR ERVL 97 138 -419 * 769 275 107 27 chr4 16210938 16211346 -168077316 + MLT1L LTR MaLR 74 607 -8 1322 171 0 0 chr4 16211434 16211639 -168077023 - AluJb SINE Alu -23 289 85 325 336 26 0 chr4 16212309 16212422 -168076240 + MIR SINE MIR 147 262 0 229 212 76 61 chr4 16212709 16212775 -168075887 - LTR13 LTR ERVK -282 725 659 497 331 0 0 chr4 16213119 16213255 -168075407 - MIR SINE MIR -125 137 2 21 0 0 0 chr4 16213658 16213679 -168074983 + AT_rich Low_complexity Low_complexity 1 21 0 409 290 81 21 chr4 16214238 16214424 -168074238 + MER112 DNA MER1_type 63 259 -1 2058 110 10 13 chr4 16217567 16217866 -168070796 + AluSg SINE Alu 1 298 -12 409 345 148 18 chr4 16218986 16219542 -168069120 + L2 LINE L2 2232 2859 -455 228 314 202 40 chr4 16219615 16219863 -168068799 + L2 LINE L2 2976 3263 -9 2109 110 3 7 chr4 16220678 16220970 -168067692 + AluSq SINE Alu 1 291 -22 720 219 49 12 chr4 16221634 16221798 -168066864 - MIR SINE MIR -81 181 12 356 237 152 56 chr4 16222231 16222444 -168066218 - MIR3 SINE MIR -33 229 20 279 196 0 0 chr4 16222688 16222734 -168065928 - Alu SINE Alu -256 46 1 1914 102 7 46 chr4 16222822 16223127 -168065535 - AluSx SINE Alu -19 293 1 394 262 133 119 chr4 16227771 16228255 -168060407 + L1M2 LINE L1 574 1050 -5799 216 0 0 0 chr4 16228255 16228279 -168060383 + (CCG)n Simple_repeat Simple_repeat 2 25 0 394 262 133 119 chr4 16228279 16228331 -168060331 + L1M2 LINE L1 1050 1100 -5749 195 42 0 0 chr4 16228331 16228355 -168060307 + (CCG)n Simple_repeat Simple_repeat 2 25 0 394 262 133 119 chr4 16228355 16228593 -168060069 + L1M2 LINE L1 1100 1360 -5489 28 0 0 0 chr4 16228690 16228718 -168059944 + GC_rich Low_complexity Low_complexity 1 28 0 2398 73 0 16 chr4 16230082 16230397 -168058265 + AluSg SINE Alu 1 310 0 2151 105 0 16 chr4 16230722 16231037 -168057625 + AluSg SINE Alu 1 310 0 267 31 0 0 chr4 16231063 16231095 -168057567 + (A)n Simple_repeat Simple_repeat 1 32 0 198 301 34 62 chr4 16232386 16232532 -168056130 + MIR SINE MIR 4 145 -117 242 241 145 62 chr4 16232750 16232895 -168055767 + MIR3 SINE MIR 37 193 -15 209 0 98 0 chr4 16235658 16235699 -168052963 + (TAATG)n Simple_repeat Simple_repeat 1 45 0 204 256 275 25 chr4 16236219 16236379 -168052283 + MIR3 SINE MIR 2 201 -7 241 370 84 33 chr4 16236526 16236885 -168051777 - L2 LINE L2 -6 3266 2890 381 240 190 0 chr4 16238335 16238456 -168050206 + MIR SINE MIR 51 194 -68 235 323 55 92 chr4 16238458 16238622 -168050040 - L2 LINE L2 0 3272 3115 249 325 86 60 chr4 16238862 16239259 -168049403 - L2 LINE L2 -584 2730 2324 372 262 271 21 chr4 16239931 16240267 -168048395 - L2 LINE L2 -985 2329 1910 251 371 57 0 chr4 16241113 16241218 -168047444 - L2 LINE L2 -20 3252 3142 2557 106 19 33 chr4 16243157 16243525 -168045137 + THE1B LTR MaLR 1 363 -1 304 159 48 0 chr4 16243579 16243642 -168045020 - L1MC4a LINE L1 -1781 6027 5962 325 0 44 0 chr4 16243642 16243687 -168044975 + (TA)n Simple_repeat Simple_repeat 2 48 0 883 250 37 16 chr4 16243916 16244160 -168044502 - L1MC4a LINE L1 -1883 5925 5677 273 326 20 10 chr4 16245318 16245498 -168043164 + MER93b-int LTR ERV1 6579 6655 -146 453 220 34 14 chr4 16245831 16245973 -168042689 + MER93b LTR ERV1 61 214 -188 1211 180 3 95 chr4 16245990 16246284 -168042378 - AluJo SINE Alu -16 296 30 744 189 31 19 chr4 16246288 16246447 -168042215 + MER93a LTR ERV1 242 402 0 1671 172 31 3 chr4 16246577 16246867 -168041795 - AluJb SINE Alu -14 298 1 3373 85 21 7 chr4 16247301 16247738 -168040924 - MLT2A1 LTR ERVL -1 443 1 577 290 70 14 chr4 16248049 16248263 -168040399 + MIR SINE MIR 37 262 0 211 292 67 50 chr4 16248505 16248625 -168040037 + L2 LINE L2 2943 3064 -208 2267 107 0 0 chr4 16249032 16249358 -168039304 - AluSx SINE Alu 0 326 1 968 230 64 55 chr4 16249682 16250043 -168038619 - LTR16A1 LTR ERVL 0 457 94 280 361 161 4 chr4 16252116 16252346 -168036316 - L2 LINE L2 -562 2752 2487 245 363 50 61 chr4 16253369 16253621 -168035041 + L2 LINE L2 1851 2099 -1215 2561 59 0 0 chr4 16253621 16253925 -168034737 - AluY SINE Alu -7 304 1 245 363 50 61 chr4 16253925 16254049 -168034613 + L2 LINE L2 2099 2223 -1091 209 169 13 52 chr4 16254227 16254304 -168034358 + (CATATA)n Simple_repeat Simple_repeat 1 74 0 230 315 22 22 chr4 16254325 16254417 -168034245 + MER5B DNA MER1_type 57 148 -30 698 140 9 0 chr4 16254429 16254536 -168034126 - L1PB1 LINE L1 -5 6146 6039 411 372 36 65 chr4 16254585 16255062 -168033600 + L2 LINE L2 2777 3243 -29 1418 305 143 11 chr4 16255169 16256097 -168032565 + L2 LINE L2 2232 3311 -2 2033 120 0 33 chr4 16257213 16257537 -168031125 - AluSq SINE Alu 0 313 1 26 0 0 0 chr4 16257905 16257931 -168030731 + AT_rich Low_complexity Low_complexity 1 26 0 2083 156 140 8 chr4 16257947 16258325 -168030337 - MSTA LTR MaLR 0 428 1 504 305 115 13 chr4 16459721 16459947 -167828715 + MIR SINE MIR 14 262 0 258 178 0 0 chr4 16459963 16460008 -167828654 - MER82 DNA MER2_type -1 652 608 2141 148 46 62 chr4 16460009 16460448 -167828214 + MSTB1 LTR MaLR 1 432 0 1028 188 5 0 chr4 16460448 16460655 -167828007 + MSTB1-int LTR MaLR 1 208 -1443 183 311 0 16 chr4 16460906 16460967 -167827695 + MIR SINE MIR 80 139 -123 2355 99 0 0 chr4 16461019 16461323 -167827339 + AluSp SINE Alu 1 304 -9 1834 175 5 72 chr4 16462011 16462429 -167826233 + MLT1B LTR MaLR 1 390 0 230 355 136 24 chr4 16462535 16462776 -167825886 - L2 LINE L2 -256 3057 2801 243 357 64 35 chr4 16463196 16463367 -167825295 + L2 LINE L2 2992 3167 -105 1660 246 53 9 chr4 16463456 16463986 -167824676 + L1ME1 LINE L1 5623 6159 -7 3109 100 9 0 chr4 16465182 16465612 -167823050 + MER57B LTR ERV1 1 434 0 430 267 55 89 chr4 16465632 16465834 -167822828 - MIR3 SINE MIR -10 198 4 21 0 0 0 chr4 16466331 16466352 -167822310 + AT_rich Low_complexity Low_complexity 1 21 0 1761 102 4 0 chr4 16466827 16467076 -167821586 - AluSq SINE Alu 0 307 58 340 235 62 0 chr4 16467159 16467240 -167821422 + MIR SINE MIR 102 187 -75 2257 115 0 6 chr4 16467250 16467562 -167821100 - AluSx SINE Alu -2 310 1 303 301 55 97 chr4 16467659 16467948 -167820714 + L2 LINE L2 2992 3268 -4 2198 192 42 65 chr4 16468513 16469080 -167819582 - MLT2B3 LTR ERVL 0 554 1 289 183 33 0 chr4 16469532 16469592 -167819070 - MLT1K LTR MaLR -522 66 5 24 32 0 0 chr4 16470427 16470458 -167818204 + AT_rich Low_complexity Low_complexity 1 31 0 206 356 11 22 chr4 16470750 16470840 -167817822 - MIR SINE MIR -157 105 17 433 248 62 16 chr4 16471255 16471384 -167817278 + L2 LINE L2 3137 3271 -1 811 292 117 3 chr4 16471875 16472252 -167816410 - LTR33A LTR ERVL 0 523 104 274 364 70 7 chr4 16472515 16472658 -167816004 + MIR SINE MIR 99 250 -12 212 244 0 0 chr4 16472741 16472786 -167815876 + CT-rich Low_complexity Low_complexity 5 49 0 466 162 50 0 chr4 16473166 16473265 -167815397 - L1P4 LINE L1 -440 5726 5623 1671 129 4 0 chr4 16473265 16473544 -167815118 + L1P4 LINE L1 5318 5597 -569 3344 53 0 12 chr4 16473564 16473994 -167814668 - L1PA7 LINE L1 -8 6146 5722 421 318 33 47 chr4 16474595 16474656 -167814006 - L2 LINE L2 -556 2758 2698 1725 178 0 32 chr4 16474656 16474971 -167813691 + AluJo SINE Alu 1 305 -7 421 318 33 47 chr4 16474971 16475120 -167813542 - L2 LINE L2 -616 2698 2551 200 318 16 0 chr4 16476028 16476091 -167812571 + MIR SINE MIR 79 142 -120 274 336 8 67 chr4 16476265 16476399 -167812263 + MIR SINE MIR 20 145 -63 11044 204 36 30 chr4 16476756 16481192 -167807470 - L1MA9 LINE L1 -10 6538 2055 449 283 45 30 chr4 16481711 16481968 -167806694 - L1MA9 LINE L1 -5716 597 267 1933 126 73 22 chr4 16482097 16482454 -167806208 + THE1C LTR MaLR 1 375 0 2251 94 0 3 chr4 16482538 16482837 -167805825 + AluSg1 SINE Alu 1 298 -11 203 0 37 0 chr4 16482840 16482867 -167805795 + (TAA)n Simple_repeat Simple_repeat 2 29 0 209 239 30 30 chr4 16482927 16482994 -167805668 - L2 LINE L2 -5 3267 3201 716 282 5 5 chr4 16483767 16483955 -167804707 - MIR SINE MIR -71 191 4 202 354 90 45 chr4 16484027 16484205 -167804457 - L2 LINE L2 -16 3256 3071 217 364 91 0 chr4 16484221 16484331 -167804331 - MIR SINE MIR -64 144 25 228 384 30 8 chr4 16484373 16484506 -167804156 + MIR3 SINE MIR 73 208 0 795 267 58 30 chr4 16485089 16485520 -167803142 + MLT1C LTR MaLR 16 467 0 396 194 42 42 chr4 16486014 16486153 -167802509 - MLT1J1 LTR MaLR -265 246 69 638 226 0 0 chr4 16486333 16486466 -167802196 + FLAM_C SINE Alu 1 133 -10 2496 57 0 0 chr4 16486543 16486839 -167801823 + AluY SINE Alu 1 296 -15 305 305 138 12 chr4 16487151 16487318 -167801344 - MIR SINE MIR -24 238 51 191 347 67 0 chr4 16488796 16488871 -167799791 - MIR SINE MIR -142 120 41 212 246 136 73 chr4 16489235 16489345 -167799317 + MIR SINE MIR 20 136 -72 2463 170 47 2 chr4 16489758 16490205 -167798457 - MLT1C LTR MaLR 0 467 1 24 0 0 0 chr4 16490586 16490610 -167798052 + AT_rich Low_complexity Low_complexity 1 24 0 246 329 25 0 chr4 16490930 16491009 -167797653 + MIR SINE MIR 110 190 -72 200 211 0 0 chr4 16491084 16491122 -167797540 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 184 224 134 30 chr4 16491209 16491276 -167797386 - L3 LINE CR1 -117 1460 1387 * 535 307 42 46 chr4 16491273 16491511 -167797151 - MIR SINE MIR -18 244 8 604 318 10 5 chr4 16491535 16491762 -167796900 + MIR SINE MIR 25 251 -11 883 295 13 0 chr4 16492079 16492303 -167796359 - MIR SINE MIR -10 252 26 1134 190 82 128 chr4 16492545 16493045 -167795617 + MLT1D LTR MaLR 26 502 -3 2376 196 20 14 chr4 16493147 16493702 -167794960 + L1MB7 LINE L1 5618 6175 -9 260 140 0 40 chr4 16493777 16493827 -167794835 - MLT2C2 LTR ERVL 0 464 417 326 23 0 23 chr4 16493848 16493892 -167794770 + (TG)n Simple_repeat Simple_repeat 2 44 0 1739 218 78 22 chr4 16493896 16494346 -167794316 - MLT2B1 LTR ERVL -45 475 1 335 303 113 22 chr4 16494465 16494650 -167794012 - MIR SINE MIR -38 224 23 409 252 24 49 chr4 16494849 16494972 -167793690 + MIR SINE MIR 116 235 -27 838 187 6 0 chr4 16495062 16495244 -167793418 + L1MA6 LINE L1 6111 6293 -7 2271 89 0 25 chr4 16495453 16495769 -167792893 - AluY SINE Alu -3 308 1 283 252 19 56 chr4 16496456 16496563 -167792099 + MIR3 SINE MIR 101 203 -5 483 193 118 50 chr4 16498053 16498214 -167790448 - MLT1H LTR MaLR 0 549 378 296 295 0 38 chr4 16498623 16498728 -167789934 - MIR3 SINE MIR -1 207 107 3504 232 61 68 chr4 16499681 16501097 -167787565 + MST-int LTR MaLR 246 1651 0 664 162 92 0 chr4 16501102 16501244 -167787418 + MSTB1 LTR MaLR 161 315 -117 2296 253 48 2 chr4 16501249 16501564 -167787098 - MER82 DNA MER2_type -40 613 314 1697 220 30 0 chr4 16501564 16501901 -167786761 - MER7A DNA MER2_type -1 345 1 2296 253 48 2 chr4 16501901 16502169 -167786493 - MER82 DNA MER2_type -339 314 3 2023 162 0 0 chr4 16502262 16502571 -167786091 - AluSx SINE Alu -3 309 1 243 61 0 0 chr4 16502589 16502622 -167786040 + (TC)n Simple_repeat Simple_repeat 2 34 0 249 33 0 0 chr4 16502623 16502653 -167786009 + (TG)n Simple_repeat Simple_repeat 2 31 0 23 0 0 0 chr4 16504174 16504197 -167784465 + AT_rich Low_complexity Low_complexity 1 23 0 2317 114 0 16 chr4 16504500 16504817 -167783845 + AluSq SINE Alu 1 312 -1 322 308 23 58 chr4 16505246 16505418 -167783244 - HAL1b LINE L1 -437 911 746 328 300 135 30 chr4 16505942 16506305 -167782357 - MLT1J2 LTR MaLR -2 448 48 478 271 112 52 chr4 16506557 16506598 -167782064 - HAL1 LINE L1 -1250 1257 1220 2186 166 84 7 chr4 16506598 16507026 -167781636 + LOR1b LTR ERV1 1 461 0 478 271 112 52 chr4 16507026 16507235 -167781427 - HAL1 LINE L1 -1287 1220 992 1686 144 93 0 chr4 16507275 16507545 -167781117 + AluSx SINE Alu 3 297 -15 5509 129 17 8 chr4 16507884 16508835 -167779827 - L1P LINE L1 -1527 4619 3661 4981 92 24 0 chr4 16508836 16509024 -167779638 + L1P LINE L1 4601 4783 -1363 402 21 0 0 chr4 16509024 16509071 -167779591 + (TA)n Simple_repeat Simple_repeat 1 47 0 4981 92 24 0 chr4 16509071 16509647 -167779015 + L1P LINE L1 4783 5383 -763 2851 74 11 0 chr4 16509656 16510036 -167778626 + L1PA8 LINE L1 5786 6169 -3 1632 233 105 49 chr4 16510036 16510683 -167777979 + MER21B LTR ERV1 74 760 -103 1566 237 56 48 chr4 16510837 16511064 -167777598 + MLT1D LTR MaLR 2 226 -279 2087 123 69 26 chr4 16511064 16511413 -167777249 - THE1B LTR MaLR 0 364 1 1566 237 56 48 chr4 16511413 16511683 -167776979 + MLT1D LTR MaLR 226 503 -2 530 360 42 25 chr4 16511694 16512094 -167776568 + L2 LINE L2 1963 2369 -945 2030 198 23 23 chr4 16512125 16512555 -167776107 - MSTB1 LTR MaLR 0 432 3 328 367 16 29 chr4 16512683 16512928 -167775734 + L2 LINE L2 2374 2615 -699 263 196 18 18 chr4 16513100 16513156 -167775506 - L2 LINE L2 -76 3237 3182 445 330 90 30 chr4 16513156 16513489 -167775173 + L2 LINE L2 2617 2969 -345 234 192 0 0 chr4 16513612 16513664 -167774998 + (TATATG)n Simple_repeat Simple_repeat 6 57 0 225 170 0 0 chr4 16513666 16513719 -167774943 + LTR66 LTR ERVL 394 446 -164 399 298 0 0 chr4 16513754 16513848 -167774814 + L2 LINE L2 3175 3268 -4 269 370 91 5 chr4 16515359 16515578 -167773084 - MIR SINE MIR -19 243 6 282 342 113 17 chr4 16515999 16516230 -167772432 - MIR SINE MIR 0 262 10 382 269 255 26 chr4 16516490 16516761 -167771901 - MLT1K LTR MaLR -113 475 143 317 283 40 79 chr4 16517305 16517369 -167771293 - MIR3 SINE MIR -25 183 118 2495 101 14 25 chr4 16517369 16517737 -167770925 + THE1B LTR MaLR 1 364 0 317 283 40 79 chr4 16517737 16517824 -167770838 - MIR3 SINE MIR -90 118 38 210 289 40 54 chr4 16518434 16518583 -167770079 + L3b LINE CR1 1246 1392 -191 199 349 82 20 chr4 16518624 16518770 -167769892 + MIR SINE MIR 48 202 -60 290 221 36 10 chr4 16519299 16519400 -167769262 - MER5A DNA MER1_type -55 134 15 337 247 52 0 chr4 16519790 16519887 -167768775 - MIR SINE MIR -98 164 63 203 133 22 0 chr4 16519923 16519968 -167768694 + CT-rich Low_complexity Low_complexity 2 47 0 695 227 0 0 chr4 16521169 16521297 -167767365 - FLAM_A SINE Alu -4 129 2 202 393 0 0 chr4 16521340 16521401 -167767261 + MIR SINE MIR 22 82 -180 572 277 27 38 chr4 16521406 16521590 -167767072 - MER20 DNA MER1_type -5 214 33 312 137 0 0 chr4 16522223 16522274 -167766388 + (A)n Simple_repeat Simple_repeat 1 51 0 227 232 91 30 chr4 16522703 16522802 -167765860 + L3 LINE CR1 1311 1415 -162 456 294 14 20 chr4 16522937 16523083 -167765579 + L3 LINE CR1 1426 1570 -7 477 356 49 31 chr4 16523266 16523491 -167765171 + MIR SINE MIR 2 230 -32 288 337 53 0 chr4 16524299 16524394 -167764268 - L2 LINE L2 -18 3254 3155 2382 71 0 0 chr4 16524603 16524897 -167763765 + AluY SINE Alu 1 294 -17 239 259 164 9 chr4 16525268 16525384 -167763278 - MLT1L LTR MaLR -332 283 150 2295 119 0 7 chr4 16526410 16526720 -167761942 + AluSx SINE Alu 1 308 -4 250 320 80 46 chr4 16527060 16527235 -167761427 + L3 LINE CR1 1395 1575 -2 1085 198 32 6 chr4 16528556 16528875 -167759787 + MER74C LTR ERVL 2 405 -153 310 289 141 6 chr4 16528946 16529102 -167759560 + L2 LINE L2 3120 3296 -17 229 265 78 20 chr4 16529559 16529661 -167759001 + L3 LINE CR1 1379 1486 -91 315 0 0 0 chr4 16531018 16531053 -167757609 + (CA)n Simple_repeat Simple_repeat 2 36 0 23 78 0 0 chr4 16531078 16531129 -167757533 + AT_rich Low_complexity Low_complexity 1 51 0 195 366 53 15 chr4 16531921 16532052 -167756610 + MER5B DNA MER1_type 13 148 -30 253 328 216 15 chr4 16532085 16532289 -167756373 + MIR SINE MIR 12 256 -6 261 83 0 0 chr4 16534421 16534457 -167754205 + (CA)n Simple_repeat Simple_repeat 2 37 0 387 290 84 26 chr4 16534893 16535048 -167753614 - MIR SINE MIR -79 183 20 993 288 36 0 chr4 16536615 16536865 -167751797 - MIR SINE MIR 0 262 4 317 316 14 21 chr4 16536968 16537122 -167751540 - MIR SINE MIR -62 146 19 221 240 40 0 chr4 16537757 16537807 -167750855 - MIR SINE MIR -123 139 88 696 271 111 33 chr4 16537807 16538113 -167750549 + MLT1J LTR MaLR 1 330 -181 430 242 0 48 chr4 16538248 16538372 -167750290 + MLT1J LTR MaLR 394 511 0 254 314 16 2 chr4 16538372 16538445 -167750217 - MIR SINE MIR -116 92 19 276 302 23 0 chr4 16539430 16539516 -167749146 - MIR SINE MIR 0 262 175 281 225 183 0 chr4 16539955 16540097 -167748565 - Charlie1 DNA MER1_type 0 2761 2594 3263 197 68 35 chr4 16540153 16541070 -167747592 - Charlie1 DNA MER1_type -258 2503 1557 2100 118 0 0 chr4 16541146 16541475 -167747187 - AluSx SINE Alu 0 331 3 2445 231 163 34 chr4 16541477 16541690 -167746972 - Charlie1 DNA MER1_type -1554 1207 1023 186 43 0 0 chr4 16541690 16541713 -167746949 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 470 189 94 9 chr4 16541715 16541821 -167746841 - FLAM_A SINE Alu -18 115 1 2445 231 163 34 chr4 16541821 16542632 -167746030 - Charlie1 DNA MER1_type -1738 1023 47 1834 193 62 24 chr4 16542733 16543183 -167745479 + MLT1C LTR MaLR 1 467 0 294 95 0 0 chr4 16544027 16544069 -167744593 + (T)n Simple_repeat Simple_repeat 1 42 0 2045 98 0 11 chr4 16545790 16546067 -167742595 - AluSx SINE Alu -38 274 1 372 257 0 46 chr4 16546067 16546176 -167742486 - MIR SINE MIR -116 146 43 214 269 51 13 chr4 16546249 16546327 -167742335 + MIR SINE MIR 56 136 -126 2231 123 3 0 chr4 16546377 16546678 -167741984 + AluSq SINE Alu 1 302 -11 2856 210 79 31 chr4 16547404 16548096 -167740566 - L1MC3 LINE L1 -1 7784 7127 231 88 0 0 chr4 16548096 16548130 -167740532 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 2856 210 79 31 chr4 16548130 16548316 -167740346 - L1MC3 LINE L1 -658 7127 6854 920 115 11 11 chr4 16548316 16548490 -167740172 + (TTCC)n Simple_repeat Simple_repeat 2 175 0 2856 210 79 31 chr4 16548490 16548556 -167740106 - L1MC3 LINE L1 -931 6854 6793 245 219 0 16 chr4 16548607 16548671 -167739991 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 25 0 0 0 chr4 16548945 16548970 -167739692 + AT_rich Low_complexity Low_complexity 1 25 0 333 357 51 26 chr4 16549001 16549250 -167739412 - MIR SINE MIR -4 258 6 2155 122 7 3 chr4 16549301 16549589 -167739073 - AluSg SINE Alu -21 289 1 3785 76 2 8 chr4 16549895 16550449 -167738213 + L1PA8 LINE L1 5623 6173 0 352 277 31 8 chr4 16550451 16550581 -167738081 - MLT2E LTR ERVL -486 142 10 203 83 28 28 chr4 16550707 16550743 -167737919 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 255 283 50 17 chr4 16550943 16551063 -167737599 + MLT1L LTR MaLR 370 493 -122 390 319 25 25 chr4 16552151 16552308 -167736354 + MLT1F1 LTR MaLR 1 157 -385 567 239 74 12 chr4 16552378 16552541 -167736121 - MLT1B LTR MaLR -217 173 1 * 1069 243 105 27 chr4 16552541 16552873 -167735789 + MLT1F1 LTR MaLR 209 566 -1 346 351 70 0 chr4 16553404 16553546 -167735116 - MIR SINE MIR -81 181 31 479 315 117 0 chr4 16554149 16554371 -167734291 - MIR SINE MIR -10 252 5 21 0 0 0 chr4 16554753 16554774 -167733888 + AT_rich Low_complexity Low_complexity 1 21 0 450 237 65 14 chr4 16554804 16554943 -167733719 - MIR SINE MIR -18 244 99 228 238 29 0 chr4 16555176 16555281 -167733381 + (TA)n Simple_repeat Simple_repeat 1 108 0 186 43 0 0 chr4 16555451 16555474 -167733188 + (TA)n Simple_repeat Simple_repeat 2 24 0 535 295 145 45 chr4 16555493 16555648 -167733014 - L1ME3A LINE L1 -220 5950 5812 230 0 33 0 chr4 16555648 16555678 -167732984 + (TA)n Simple_repeat Simple_repeat 2 32 0 535 295 145 45 chr4 16555678 16556054 -167732608 - L1ME3A LINE L1 -358 5812 5366 538 321 39 25 chr4 16556325 16556605 -167732057 - L2 LINE L2 -2313 1001 718 415 265 45 53 chr4 16556681 16556813 -167731849 + L2 LINE L2 3142 3272 0 * 608 327 90 46 chr4 16556809 16557243 -167731419 - L2 LINE L2 -2636 678 226 583 329 68 30 chr4 16557246 16557720 -167730942 - LTR33 LTR ERVL -7 514 23 186 226 57 38 chr4 16558732 16558785 -167729877 + MIR SINE MIR 122 175 -87 276 360 9 0 chr4 16559349 16559460 -167729202 + MIR SINE MIR 151 262 0 269 331 167 36 chr4 16560864 16561278 -167727384 - L2 LINE L2 -907 2407 1940 282 341 170 4 chr4 16561297 16561567 -167727095 + L3 LINE CR1 1150 1464 -113 27 87 0 0 chr4 16562368 16562437 -167726225 + AT_rich Low_complexity Low_complexity 1 69 0 25 0 0 0 chr4 16562779 16562804 -167725858 + AT_rich Low_complexity Low_complexity 1 25 0 2262 138 0 0 chr4 16563019 16563331 -167725331 + AluSx SINE Alu 1 312 0 211 290 0 0 chr4 16563358 16563427 -167725235 + (TA)n Simple_repeat Simple_repeat 1 69 0 1394 229 49 9 chr4 16563498 16563848 -167724814 + MLT1A1 LTR MaLR 1 364 -1 2436 242 48 10 chr4 16563851 16564479 -167724183 + MLT1A1-int LTR MaLR 9 660 -1075 1930 225 12 9 chr4 16564857 16565283 -167723379 + MLT1A1-int LTR MaLR 1309 1735 0 1302 195 19 39 chr4 16565283 16565590 -167723072 + MLT1A1 LTR MaLR 1 301 -64 343 359 26 0 chr4 16565648 16565765 -167722897 + L2 LINE L2 3147 3266 -6 227 204 0 23 chr4 16566946 16566990 -167721672 - L2 LINE L2 -3 3310 3268 275 122 20 0 chr4 16568663 16568712 -167719950 + (TCTA)n Simple_repeat Simple_repeat 2 51 0 1543 246 66 25 chr4 16568712 16569152 -167719510 - MLT2B1 LTR ERVL -62 458 1 284 359 55 39 chr4 16569268 16569703 -167718959 + L2 LINE L2 2805 3246 -67 356 330 69 67 chr4 16569740 16570101 -167718561 + L2 LINE L2 2911 3272 0 460 279 66 66 chr4 16571669 16571913 -167716749 - MIR SINE MIR -4 258 15 248 213 49 16 chr4 16571923 16571984 -167716678 - MIR3 SINE MIR -37 171 109 1698 192 15 52 chr4 16572307 16572708 -167715954 - MLT1B LTR MaLR -4 386 1 1937 106 20 0 chr4 16572769 16573062 -167715600 + L1MA2 LINE L1 6006 6304 0 23 68 0 0 chr4 16573672 16573716 -167714946 + AT_rich Low_complexity Low_complexity 1 44 0 186 316 13 38 chr4 16573757 16573836 -167714826 - MIR SINE MIR -89 173 97 592 224 189 5 chr4 16573854 16574055 -167714607 - MER5C DNA MER1_type -1 323 86 255 31 0 0 chr4 16574102 16574134 -167714528 + (CAAAAA)n Simple_repeat Simple_repeat 4 35 0 420 226 73 8 chr4 16574532 16574656 -167714006 - MER94 DNA DNA 0 134 3 272 347 89 37 chr4 16575212 16575402 -167713260 + L2 LINE L2 2569 2768 -546 268 229 14 0 chr4 16575515 16575585 -167713077 - MER116 DNA Mariner -8 72 2 568 311 44 22 chr4 16575678 16575906 -167712756 - L2 LINE L2 0 3313 3081 254 255 102 31 chr4 16576145 16576243 -167712419 + MIR SINE MIR 112 216 -46 210 282 196 49 chr4 16576389 16576552 -167712110 - L2 LINE L2 -2 3311 3125 409 359 151 9 chr4 16577869 16577901 -167710761 + L2 LINE L2 2260 2286 -1028 2080 116 78 29 chr4 16577901 16578246 -167710416 - THE1B LTR MaLR -2 362 1 409 359 151 9 chr4 16578246 16578664 -167709998 + L2 LINE L2 2286 2774 -540 1608 199 69 62 chr4 16579111 16579559 -167709103 + MLT2B1 LTR ERVL 1 451 -69 182 37 37 0 chr4 16580033 16580060 -167708602 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 2285 75 0 30 chr4 16580172 16580477 -167708185 - AluY SINE Alu -15 296 1 542 311 96 34 chr4 16580512 16580898 -167707764 - LTR16C LTR ERVL 0 491 82 277 330 127 41 chr4 16581329 16581526 -167707136 - MIR SINE MIR -1 261 48 480 366 42 28 chr4 16581710 16582139 -167706523 - L3 LINE CR1 -69 1508 1074 211 319 89 30 chr4 16582284 16582453 -167706209 - MIR3 SINE MIR -6 202 24 181 308 19 0 chr4 16582796 16582848 -167705814 + MIR SINE MIR 3 55 -207 356 274 19 19 chr4 16582878 16582984 -167705678 + MIR SINE MIR 49 154 -108 209 234 44 29 chr4 16583016 16583153 -167705509 + (TTATA)n Simple_repeat Simple_repeat 1 139 0 357 109 0 0 chr4 16583317 16583372 -167705290 + (CAT)n Simple_repeat Simple_repeat 3 57 0 183 279 70 109 chr4 16583390 16583619 -167705043 + L2 LINE L2 1321 1540 -1774 1472 219 52 52 chr4 16583765 16584285 -167704377 - MLT1D-int LTR MaLR -760 611 1 1599 230 100 25 chr4 16584285 16584755 -167703907 - MLT1D LTR MaLR 0 505 1 40768 34 21 1 chr4 16584777 16590802 -167697860 - L1PA3 LINE L1 0 6155 7 210 360 130 33 chr4 16591800 16592222 -167696440 - L2 LINE L2 -377 2937 2475 278 150 0 17 chr4 16592527 16592587 -167696075 + (GAAA)n Simple_repeat Simple_repeat 3 61 0 224 322 35 35 chr4 16592787 16592874 -167695788 + MIR SINE MIR 27 113 -149 468 303 67 71 chr4 16593047 16593496 -167695166 - L1M4 LINE L1 -2346 3800 3354 501 271 92 39 chr4 16594057 16594341 -167694321 - MLT1K LTR MaLR -162 426 128 513 191 0 0 chr4 16594499 16594604 -167694058 + (CA)n Simple_repeat Simple_repeat 2 106 0 939 210 75 45 chr4 16594605 16594938 -167693724 + MER2 DNA MER2_type 2 344 0 288 91 0 0 chr4 16594946 16594990 -167693672 + (TG)n Simple_repeat Simple_repeat 1 44 0 21 0 0 0 chr4 16595173 16595194 -167693468 + AT_rich Low_complexity Low_complexity 1 21 0 374 274 126 39 chr4 16595251 16595447 -167693215 + MIR SINE MIR 36 255 -7 231 306 89 8 chr4 16598484 16598608 -167690054 + MIR SINE MIR 15 148 -114 278 318 23 102 chr4 16598967 16599143 -167689519 - MIR SINE MIR -69 193 32 463 183 54 11 chr4 16599793 16599886 -167688776 - L2 LINE L2 -4 3268 3172 433 236 99 19 chr4 16599886 16600047 -167688615 - MER117 DNA MER1_type 0 197 24 2006 145 0 0 chr4 16600239 16600574 -167688088 + AluSx SINE Alu 1 335 0 301 286 0 0 chr4 16602114 16602191 -167686471 - MIR SINE MIR -25 237 161 1288 216 69 49 chr4 16602196 16602644 -167686018 - MLT1C LTR MaLR -2 465 9 262 330 11 0 chr4 16602686 16602777 -167685885 - MIR SINE MIR -154 108 17 369 289 131 56 chr4 16602948 16603321 -167685341 + LTR16A1 LTR ERVL 1 401 -56 409 310 30 42 chr4 16603379 16603584 -167685078 - MIR SINE MIR -36 172 3 2171 102 17 3 chr4 16603709 16603881 -167684781 - AluSp SINE Alu -14 299 120 468 0 0 0 chr4 16603881 16603933 -167684729 + (TTA)n Simple_repeat Simple_repeat 2 53 0 2171 102 17 3 chr4 16603933 16604055 -167684607 - AluSp SINE Alu -193 120 1 235 286 0 0 chr4 16604599 16604648 -167684014 + (TG)n Simple_repeat Simple_repeat 1 49 0 339 293 65 126 chr4 16604830 16605124 -167683538 + L2 LINE L2 2910 3185 -87 217 219 158 12 chr4 16605219 16605301 -167683361 + MIR SINE MIR 103 196 -66 248 267 50 33 chr4 16605352 16605472 -167683190 + MLT1F LTR MaLR 136 257 -292 294 168 36 93 chr4 16605617 16605724 -167682938 + MLT1F LTR MaLR 443 541 -1 206 243 29 29 chr4 16605728 16605798 -167682864 + MIR SINE MIR 161 230 -32 340 308 131 37 chr4 16606260 16606643 -167682019 + L2 LINE L2 2225 2643 -671 250 231 0 0 chr4 16606719 16606771 -167681891 + (TG)n Simple_repeat Simple_repeat 1 52 0 2690 107 0 6 chr4 16606943 16607308 -167681354 - THE1B LTR MaLR -1 363 1 1941 153 0 0 chr4 16607491 16607794 -167680868 + AluSx SINE Alu 3 305 0 225 236 14 42 chr4 16608005 16608077 -167680585 + MIR SINE MIR 130 199 -63 2165 182 23 14 chr4 16609858 16610286 -167678376 - MSTB1 LTR MaLR 0 432 1 306 293 96 27 chr4 16610364 16610552 -167678110 + MIR SINE MIR 32 232 -30 194 296 43 26 chr4 16610544 16610659 -167678003 - MIR SINE MIR -21 241 125 * 238 162 38 36 chr4 16611152 16611399 -167677263 + (TA)n Simple_repeat Simple_repeat 1 247 0 979 221 19 5 chr4 16611764 16611977 -167676685 - MER20 DNA MER1_type 0 219 4 282 287 103 52 chr4 16612042 16612216 -167676446 - MER58A DNA MER1_type -15 209 27 307 242 68 60 chr4 16612409 16612504 -167676158 - L1ME4a LINE L1 -195 5926 5833 2428 95 0 0 chr4 16612504 16612809 -167675853 - AluY SINE Alu -6 305 1 307 242 68 60 chr4 16612809 16613080 -167675582 - L1ME4a LINE L1 -288 5833 5535 288 77 0 0 chr4 16614008 16614047 -167674615 + (TG)n Simple_repeat Simple_repeat 2 40 0 259 241 0 11 chr4 16614047 16614134 -167674528 + (TA)n Simple_repeat Simple_repeat 2 87 0 222 116 0 0 chr4 16614143 16614186 -167674476 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 390 317 23 75 chr4 16614596 16614861 -167673801 + L2 LINE L2 3023 3273 -40 2534 236 32 5 chr4 16614971 16615586 -167673076 + MER73 LTR ERVL 13 644 0 206 266 53 80 chr4 16615744 16615857 -167672805 - MIR SINE MIR -67 195 86 290 304 35 17 chr4 16616846 16616961 -167671701 - MIR3 SINE MIR -81 127 11 1299 198 132 118 chr4 16617037 16617584 -167671078 + LTR28 LTR ERV1 1 620 -277 2870 24 0 3 chr4 16617584 16617951 -167670711 + L1PA2 LINE L1 5810 6175 0 1299 198 132 118 chr4 16617951 16618151 -167670511 + LTR28 LTR ERV1 620 816 -81 435 261 25 8 chr4 16618230 16618349 -167670313 + LTR28 LTR ERV1 900 1020 0 1654 155 146 6 chr4 16618468 16618810 -167669852 - MLT1B LTR MaLR 0 390 1 337 244 85 21 chr4 16618950 16619092 -167669570 - MIR SINE MIR -37 171 20 216 277 106 0 chr4 16619407 16619501 -167669161 + MIR SINE MIR 158 261 -1 285 151 0 0 chr4 16619617 16619670 -167668992 + (TG)n Simple_repeat Simple_repeat 2 54 0 429 371 17 11 chr4 16619799 16619977 -167668685 - L3 LINE CR1 -5 1572 1394 265 288 34 34 chr4 16619996 16620114 -167668548 - MIR SINE MIR -10 252 135 845 251 64 0 chr4 16620127 16620330 -167668332 - MIR SINE MIR -24 238 23 285 276 15 104 chr4 16620356 16620490 -167668172 - MIR SINE MIR -112 150 29 245 234 52 0 chr4 16620913 16620990 -167667672 + L1MC4 LINE L1 6618 6698 -1344 448 322 97 26 chr4 16621032 16621414 -167667248 - L1 LINE L1 -1354 4792 4384 237 24 71 0 chr4 16621701 16621743 -167666919 + (TA)n Simple_repeat Simple_repeat 2 46 0 263 167 15 0 chr4 16621772 16621838 -167666824 + (TA)n Simple_repeat Simple_repeat 1 67 0 268 284 37 18 chr4 16622106 16622215 -167666447 - MLT1I LTR MaLR -54 355 245 2213 102 3 0 chr4 16623195 16623488 -167665174 + AluSx SINE Alu 1 294 -18 300 313 109 30 chr4 16623808 16624351 -167664311 + HAL1b LINE L1 39 624 -724 1516 234 133 54 chr4 16624671 16625662 -167663000 + L1MC5 LINE L1 6476 7531 -430 362 316 61 31 chr4 16625744 16625940 -167662722 + L1ME3A LINE L1 5962 6163 -7 24 32 0 0 chr4 16626140 16626171 -167662491 + AT_rich Low_complexity Low_complexity 1 31 0 2177 123 0 0 chr4 16626180 16626473 -167662189 + AluSg SINE Alu 1 293 -17 319 326 0 0 chr4 16626492 16626581 -167662081 + L1MC4 LINE L1 6615 6703 -1339 305 333 0 0 chr4 16626527 16626617 -167662045 - L1MC4 LINE L1 -1339 6703 6614 * 545 176 0 17 chr4 16626624 16626743 -167661919 + (TATG)n Simple_repeat Simple_repeat 2 118 0 2123 127 0 0 chr4 16626999 16627291 -167661371 - AluSx SINE Alu -20 292 1 218 250 0 0 chr4 16627448 16627500 -167661162 - L2 LINE L2 -14 3299 3248 196 376 123 19 chr4 16627629 16627791 -167660871 + L2 LINE L2 2595 2773 -541 884 297 125 55 chr4 16628221 16629249 -167659413 - L2 LINE L2 0 3313 2208 534 333 187 21 chr4 16629607 16630180 -167658482 - L2 LINE L2 -1117 2197 1530 569 100 0 0 chr4 16630413 16630493 -167658169 - MADE1 DNA Mariner 0 80 1 521 323 56 10 chr4 16630550 16630745 -167657917 - MIR SINE MIR -41 221 18 1013 175 0 0 chr4 16630919 16631079 -167657583 + AluJb SINE Alu 1 160 -152 601 223 0 16 chr4 16631278 16631399 -167657263 + AluJb SINE Alu 173 291 -21 558 234 48 14 chr4 16631412 16631621 -167657041 + L1MC5 LINE L1 6976 7191 -770 388 320 39 54 chr4 16631647 16631906 -167656756 - MLT1L LTR MaLR -356 259 5 227 337 232 23 chr4 16632485 16632791 -167655871 - L2 LINE L2 0 3272 2903 2074 242 101 21 chr4 16633679 16634279 -167654383 + L1ME1 LINE L1 1007 1705 -4835 233 57 29 0 chr4 16634279 16634314 -167654348 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 2074 242 101 21 chr4 16634314 16634638 -167654024 + L1ME1 LINE L1 1705 2002 -4538 1036 215 57 73 chr4 16634672 16635221 -167653441 + L1ME1 LINE L1 2724 3263 -3277 2322 100 0 6 chr4 16635221 16635532 -167653130 + AluSc SINE Alu 1 309 0 1626 204 21 104 chr4 16635570 16635751 -167652911 - L1MA8 LINE L1 -21 6270 6075 1773 181 48 0 chr4 16635751 16636082 -167652580 + MER7A DNA MER2_type 2 346 0 1626 204 21 104 chr4 16636082 16636354 -167652308 - L1MA8 LINE L1 -216 6075 5890 2065 85 53 14 chr4 16636354 16636637 -167652025 - AluY SINE Alu -17 294 1 1626 204 21 104 chr4 16636637 16636863 -167651799 - L1MA8 LINE L1 -401 5890 5647 * 2067 248 55 41 chr4 16636857 16637237 -167651425 + L1ME1 LINE L1 3284 3657 -2883 1176 155 22 9 chr4 16637237 16637463 -167651199 + L1MA2 LINE L1 6063 6291 -13 2067 248 55 41 chr4 16637463 16638218 -167650444 + L1ME1 LINE L1 3657 4434 -2106 2357 244 30 51 chr4 16638253 16639393 -167649269 + L1ME1 LINE L1 5084 6182 -378 2476 100 47 3 chr4 16639393 16639752 -167648910 + THE1C LTR MaLR 1 375 0 2357 244 30 51 chr4 16639752 16640067 -167648595 + L1ME1 LINE L1 6182 6502 -58 827 200 0 0 chr4 16640085 16640230 -167648432 + FRAM SINE Alu 6 150 -26 238 314 0 0 chr4 16640880 16640950 -167647712 - L2 LINE L2 0 3272 3203 653 277 18 79 chr4 16641129 16641407 -167647255 + MIR SINE MIR 2 262 0 194 289 0 113 chr4 16641564 16641661 -167647001 + MIR3 SINE MIR 109 194 -14 2564 281 103 66 chr4 16642117 16642951 -167645711 - HAL1 LINE L1 0 2507 1705 1475 146 29 36 chr4 16642951 16643226 -167645436 - AluJb SINE Alu -19 293 21 2564 281 103 66 chr4 16643226 16644750 -167643912 - HAL1 LINE L1 -802 1705 62 246 291 45 60 chr4 16645038 16645172 -167643490 - MIR SINE MIR -13 249 118 345 308 11 0 chr4 16645422 16645513 -167643149 + MIR3 SINE MIR 74 165 -43 21 0 0 0 chr4 16646034 16646055 -167642607 + AT_rich Low_complexity Low_complexity 1 21 0 314 278 10 21 chr4 16646115 16646212 -167642450 - MIR3 SINE MIR -23 185 90 514 328 87 0 chr4 16646604 16646799 -167641863 - MIR SINE MIR -31 231 20 245 335 34 62 chr4 16647416 16647595 -167641067 + MIR SINE MIR 86 259 -3 211 226 65 48 chr4 16648688 16648750 -167639912 - L2 LINE L2 -2 3270 3208 867 218 38 114 chr4 16648767 16649060 -167639602 - MLT1B LTR MaLR 0 390 139 2679 33 0 3 chr4 16649060 16649367 -167639295 - AluY SINE Alu -5 306 1 867 218 38 114 chr4 16649367 16649489 -167639173 - MLT1B LTR MaLR -251 139 9 758 172 43 27 chr4 16649586 16649772 -167638890 - MER53 DNA DNA 0 189 1 1621 202 5 68 chr4 16650026 16650437 -167638225 + MLT1B LTR MaLR 6 390 0 1071 193 30 44 chr4 16650683 16650790 -167637872 - LTR37A LTR ERV1 -134 292 185 2142 161 28 3 chr4 16650790 16651145 -167637517 + MLT1A1 LTR MaLR 2 365 0 1071 193 30 44 chr4 16651145 16651333 -167637329 - LTR37A LTR ERV1 -241 185 1 190 313 114 8 chr4 16651508 16651639 -167637023 - MIR3 SINE MIR -3 205 61 1745 177 0 11 chr4 16651728 16652011 -167636651 - AluJb SINE Alu -30 282 3 2066 140 0 13 chr4 16652048 16652356 -167636306 - AluSx SINE Alu -8 304 1 251 270 0 40 chr4 16652773 16652847 -167635815 + L2 LINE L2 3200 3270 -2 6279 31 1 4 chr4 16652901 16653645 -167635017 - L1PA7 LINE L1 -11 6143 5402 2669 101 28 0 chr4 16653645 16654032 -167634630 + L1P LINE L1 2216 2613 -3533 22 35 0 0 chr4 16654388 16654417 -167634245 + AT_rich Low_complexity Low_complexity 1 29 0 316 283 139 27 chr4 16654553 16654740 -167633922 - MIR SINE MIR -42 220 13 191 260 130 13 chr4 16655013 16655090 -167633572 - MIR SINE MIR -57 205 120 647 304 77 5 chr4 16655121 16655341 -167633321 - MIR SINE MIR -5 257 22 281 260 39 87 chr4 16655350 16655454 -167633208 - MIR SINE MIR -144 118 20 282 300 0 0 chr4 16655526 16655596 -167633066 + MIR SINE MIR 81 150 -112 917 216 0 26 chr4 16655598 16655852 -167632810 + MLT1A1 LTR MaLR 1 315 -59 2189 126 0 0 chr4 16655859 16656152 -167632510 + AluSg SINE Alu 7 299 -11 667 87 0 0 chr4 16656319 16656411 -167632251 + AluSg/x SINE Alu 219 310 0 383 344 11 50 chr4 16658006 16658186 -167630476 - MIR SINE MIR -70 192 20 1237 231 29 41 chr4 16658242 16658448 -167630214 + MLT1A1 LTR MaLR 3 224 -150 1933 102 4 0 chr4 16658448 16658702 -167629960 + AluSc SINE Alu 55 309 0 1237 231 29 41 chr4 16658702 16658852 -167629810 + MLT1A1 LTR MaLR 224 374 0 186 343 59 20 chr4 16658909 16659011 -167629651 - L2 LINE L2 -11 3261 3156 877 178 0 35 chr4 16659017 16659074 -167629588 - MER3 DNA MER1_type 0 209 152 1542 146 59 150 chr4 16659074 16659320 -167629342 - Tigger2a DNA MER2_type -2275 433 249 2254 135 0 0 chr4 16659320 16659632 -167629030 + AluSx SINE Alu 1 312 0 1542 146 59 150 chr4 16659632 16659859 -167628803 - Tigger2a DNA MER2_type -2459 249 3 877 178 0 35 chr4 16659859 16659970 -167628692 - MER3 DNA MER1_type -57 152 47 1728 323 125 30 chr4 16660147 16660699 -167627963 - L2 LINE L2 -3 3310 2812 1975 123 91 26 chr4 16660699 16661041 -167627621 + THE1B LTR MaLR 1 364 0 11528 94 9 1 chr4 16661043 16662608 -167626054 + THE1B-int LTR MaLR 3 1579 -1 1892 117 99 38 chr4 16662609 16662952 -167625710 + THE1B LTR MaLR 1 364 0 1728 323 125 30 chr4 16662952 16663822 -167624840 - L2 LINE L2 -500 2813 1744 733 230 42 5 chr4 16663830 16664043 -167624619 - MER33 DNA MER1_type -103 221 1 1764 141 120 20 chr4 16664860 16665177 -167623485 - THE1C LTR MaLR 0 375 20 2597 89 104 7 chr4 16665177 16665582 -167623080 - MLT2A1 LTR ERVL 0 444 1 1764 141 120 20 chr4 16665582 16665605 -167623057 - THE1C LTR MaLR -355 20 1 3489 239 59 15 chr4 16666290 16666682 -167621980 + L1MC4 LINE L1 6462 6835 -1207 1426 186 71 29 chr4 16666682 16667032 -167621630 - MLT1A1 LTR MaLR 0 365 1 3489 239 59 15 chr4 16667032 16667636 -167621026 + L1MC4 LINE L1 6835 7502 -540 409 240 80 108 chr4 16667636 16667923 -167620739 + L1MC4 LINE L1 7753 8031 -11 1764 107 0 34 chr4 16668727 16669044 -167619618 + AluSx SINE Alu 37 344 0 26 0 0 0 chr4 16669523 16669549 -167619113 + AT_rich Low_complexity Low_complexity 1 26 0 184 378 51 0 chr4 16669743 16669841 -167618821 - MIR SINE MIR -34 228 126 366 222 22 0 chr4 16669883 16669973 -167618689 - MER57A LTR ERV1 -77 326 235 282 240 128 16 chr4 16670011 16670136 -167618526 - MER57B LTR ERV1 -293 141 3 774 200 0 26 chr4 16670138 16670293 -167618369 - MER57B-int LTR ERV1 0 7537 7387 630 187 24 8 chr4 16670473 16670596 -167618066 - LTR54B LTR ERV1 -366 132 8 4192 214 20 20 chr4 16670598 16671544 -167617118 - MER57B-int LTR ERV1 -392 7145 6200 993 214 23 26 chr4 16671899 16672217 -167616445 - MER57A-int LTR ERV1 -771 6204 3954 3081 213 68 74 chr4 16672709 16674150 -167614512 - MER57A-int LTR ERV1 -1716 5821 2464 717 218 90 72 chr4 16674132 16674481 -167614181 - MER57A-int LTR ERV1 -2385 3561 2364 * 449 242 11 76 chr4 16674489 16674673 -167613989 - MER57A-int LTR ERV1 -3028 2095 1549 1398 193 54 33 chr4 16674688 16675053 -167613609 + MSTB1 LTR MaLR 1 396 0 812 272 66 21 chr4 16675239 16675526 -167613136 - MER57A-int LTR ERV1 -2291 4467 4168 724 277 28 24 chr4 16675607 16675860 -167612802 - MER34C LTR ERV1 -177 408 155 2861 237 23 66 chr4 16676069 16676969 -167611693 - MER57A-int LTR ERV1 -6673 864 3 2104 114 0 0 chr4 16676999 16677324 -167611338 - AluSg SINE Alu 0 325 1 700 215 134 8 chr4 16677324 16677629 -167611033 - MER57A LTR ERV1 -28 375 1 308 374 0 4 chr4 16677630 16677734 -167610928 - MIR SINE MIR -93 115 14 240 245 0 19 chr4 16678660 16678713 -167609949 - MIR SINE MIR -152 110 59 226 343 173 26 chr4 16678799 16679105 -167609557 + L2 LINE L2 308 658 -2656 244 309 0 0 chr4 16679222 16679303 -167609359 + L1ME LINE L1 927 1007 -5940 319 371 86 43 chr4 16679655 16679911 -167608751 + L1ME LINE L1 1135 1401 -5546 246 277 0 50 chr4 16679926 16680027 -167608635 + L1ME LINE L1 1372 1467 -5480 360 291 0 102 chr4 16680028 16680234 -167608428 + L1ME LINE L1 1341 1525 -5334 2675 212 6 39 chr4 16680234 16680905 -167607757 - L1 LINE L1 -1455 4691 4043 * 3072 209 7 13 chr4 16680902 16681609 -167607053 + L1P LINE L1 4670 5372 -774 479 179 38 0 chr4 16681988 16682094 -167606568 + L1PA16 LINE L1 4951 5060 -1086 * 4495 148 22 9 chr4 16682088 16682856 -167605806 + L1PA16 LINE L1 5389 6166 0 358 297 69 12 chr4 16682872 16683049 -167605613 - L1M4 LINE L1 -712 5454 5262 1194 186 49 40 chr4 16683071 16683318 -167605344 - AluJo SINE Alu -9 303 55 248 239 37 18 chr4 16683535 16683644 -167605018 - L1M4 LINE L1 -1112 5034 4924 2849 88 26 0 chr4 16684549 16684967 -167603695 + L1P LINE L1 4881 5309 -837 534 31 0 0 chr4 16684967 16685031 -167603631 + (TTTC)n Simple_repeat Simple_repeat 2 65 0 1596 180 22 30 chr4 16685031 16685393 -167603269 - L1MA8 LINE L1 -4 6287 5929 263 211 35 0 chr4 16685393 16685450 -167603212 + MLT1H LTR MaLR 489 547 -2 298 276 22 120 chr4 16685451 16685676 -167602986 - MIR SINE MIR -20 242 40 297 373 30 15 chr4 16686152 16686286 -167602376 + MIR3 SINE MIR 11 146 -62 212 280 149 28 chr4 16686325 16686432 -167602230 - L2 LINE L2 0 3272 3153 2424 159 0 13 chr4 16686503 16687053 -167601609 + L1P4 LINE L1 5105 5648 -518 2196 157 73 13 chr4 16687055 16687451 -167601211 + MSTB LTR MaLR 1 420 -6 1682 136 3 71 chr4 16687478 16687801 -167600861 - LTR62 LTR ERVK -418 301 1 26 0 0 0 chr4 16687920 16687946 -167600716 + AT_rich Low_complexity Low_complexity 1 26 0 21 57 0 0 chr4 16688068 16688103 -167600559 + AT_rich Low_complexity Low_complexity 1 35 0 274 250 0 83 chr4 16688266 16688386 -167600276 - MIR SINE MIR 0 262 153 1985 130 10 3 chr4 16688527 16688819 -167599843 + AluSc SINE Alu 1 294 -15 2864 194 43 19 chr4 16689114 16689747 -167598915 + L1MB7 LINE L1 5528 6175 -9 300 254 46 69 chr4 16690061 16690191 -167598471 + L1MC4 LINE L1 6585 6711 -1331 1209 168 29 5 chr4 16690509 16690718 -167597944 - AluJb SINE Alu -13 299 86 2765 13 0 3 chr4 16690729 16691036 -167597626 - AluYb8 SINE Alu -12 306 1 2140 142 9 3 chr4 16694033 16694378 -167594284 - L1PA15 LINE L1 -2 6163 5817 1188 192 76 139 chr4 16694556 16694951 -167593711 - MLT1E LTR MaLR -223 370 1 322 222 61 40 chr4 16694951 16695033 -167593629 + MLT1H LTR MaLR 113 196 -353 222 354 85 15 chr4 16695741 16695871 -167592791 + MIR SINE MIR 118 256 -6 226 321 12 12 chr4 16697209 16697293 -167591369 + MIR3 SINE MIR 114 197 -11 267 79 0 0 chr4 16697806 16697844 -167590818 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 319 325 24 32 chr4 16697845 16697968 -167590694 - L2 LINE L2 -12 3260 3139 1951 114 0 14 chr4 16698230 16698365 -167590297 + AluSp SINE Alu 1 136 -177 2567 58 0 3 chr4 16698365 16698677 -167589985 + AluY SINE Alu 1 311 0 1951 114 0 14 chr4 16698677 16698762 -167589900 + AluSp SINE Alu 136 276 -37 376 119 0 0 chr4 16698762 16698821 -167589841 + AluSp/q SINE Alu 218 276 -27 214 319 190 9 chr4 16699203 16699319 -167589343 + L2 LINE L2 3117 3253 -19 232 264 44 44 chr4 16699356 16699447 -167589215 + MIR SINE MIR 104 194 -68 34 24 0 0 chr4 16699489 16699530 -167589132 + AT_rich Low_complexity Low_complexity 1 41 0 876 338 108 21 chr4 16699534 16700022 -167588640 + L2 LINE L2 2219 2663 -650 5705 63 0 4 chr4 16700022 16700748 -167587914 + L1PA7 LINE L1 5432 6154 0 876 338 108 21 chr4 16700748 16701215 -167587447 + L2 LINE L2 2663 3253 -60 1670 304 90 27 chr4 16701219 16702327 -167586335 - L2 LINE L2 -1 3312 2143 354 83 0 0 chr4 16702327 16702375 -167586287 + Alu SINE Alu 2 49 -253 365 287 17 9 chr4 16702671 16702786 -167585876 + MLT1C LTR MaLR 19 134 -333 338 44 0 0 chr4 16702782 16702827 -167585835 - U5 snRNA snRNA -68 48 4 * 939 227 63 39 chr4 16702836 16703171 -167585491 + MLT1C LTR MaLR 125 467 0 447 349 99 49 chr4 16703377 16704076 -167584586 + L2 LINE L2 1998 2731 -583 238 338 51 25 chr4 16704415 16704572 -167584090 + L2 LINE L2 3123 3283 -30 209 273 0 0 chr4 16704576 16704631 -167584031 + (TGAA)n Simple_repeat Simple_repeat 3 57 0 187 250 0 0 chr4 16704958 16705002 -167583660 + MIR SINE MIR 83 126 -82 615 114 72 0 chr4 16705042 16705208 -167583454 + (TA)n Simple_repeat Simple_repeat 1 178 0 382 271 93 0 chr4 16705228 16705346 -167583316 - MIR SINE MIR -125 137 9 25 0 0 0 chr4 16706264 16706289 -167582373 + AT_rich Low_complexity Low_complexity 1 25 0 3271 87 2 9 chr4 16706920 16707371 -167581291 - L1PA10 LINE L1 -11 6157 5710 338 284 39 10 chr4 16707786 16707888 -167580774 - L2 LINE L2 -10 3303 3199 771 134 0 0 chr4 16708413 16708532 -167580130 - L1PA14 LINE L1 -536 5625 5507 3233 125 0 14 chr4 16708534 16709045 -167579617 + L1PA14 LINE L1 5653 6156 -5 1023 208 55 97 chr4 16709080 16709151 -167579511 + MLT1A2 LTR MaLR 13 85 -289 1422 375 106 11 chr4 16709151 16709560 -167579102 + MLT2B2 LTR ERVL 1 462 -53 225 0 0 0 chr4 16709560 16709585 -167579077 + (TATG)n Simple_repeat Simple_repeat 4 28 0 1422 375 106 11 chr4 16709585 16709645 -167579017 + MLT2B2 LTR ERVL 462 515 0 1023 208 55 97 chr4 16709645 16709934 -167578728 + MLT1A2 LTR MaLR 85 358 -16 355 278 78 78 chr4 16710487 16710705 -167577957 + MLT1J LTR MaLR 241 461 -50 2053 142 3 3 chr4 16710705 16711008 -167577654 - AluSq SINE Alu -10 303 1 355 278 78 78 chr4 16711008 16711059 -167577603 + MLT1J LTR MaLR 460 510 -1 261 83 0 0 chr4 16711431 16711467 -167577195 + (T)n Simple_repeat Simple_repeat 1 36 0 200 111 19 74 chr4 16711554 16711575 -167577087 + (TAAAAA)n Simple_repeat Simple_repeat 4 25 -29 1848 123 0 90 chr4 16711575 16711885 -167576777 + AluSg SINE Alu 3 284 -26 200 111 19 74 chr4 16711885 16711917 -167576745 + (TAAAAA)n Simple_repeat Simple_repeat 25 54 0 27 29 0 0 chr4 16711950 16711984 -167576678 + AT_rich Low_complexity Low_complexity 1 34 0 613 171 0 4 chr4 16712397 16712610 -167576052 + AluJo SINE Alu 11 296 -16 867 241 80 19 chr4 16712874 16713198 -167575464 - MER2 DNA MER2_type 0 344 1 2367 214 47 43 chr4 16713341 16713985 -167574677 + MER82 DNA MER2_type 8 653 0 1200 189 11 70 chr4 16714334 16714427 -167574235 + AluSp SINE Alu 45 142 -171 1112 262 0 3 chr4 16714427 16714725 -167573937 + AluY SINE Alu 5 301 0 1200 189 11 70 chr4 16714725 16714917 -167573745 + AluSp SINE Alu 142 313 0 316 389 107 21 chr4 16714930 16715267 -167573395 - L2 LINE L2 -480 2834 2469 21 36 0 0 chr4 16715577 16715605 -167573057 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr4 16716246 16716271 -167572391 + AT_rich Low_complexity Low_complexity 1 25 0 2541 71 0 0 chr4 16716324 16716634 -167572028 - AluY SINE Alu -1 310 1 414 335 104 45 chr4 16717665 16717888 -167570774 + L1MC4a LINE L1 5414 5622 -2186 1764 153 49 0 chr4 16717888 16718204 -167570458 - AluSx SINE Alu 0 312 1 414 335 104 45 chr4 16718204 16718449 -167570213 + L1MC4a LINE L1 5622 5910 -1898 2014 144 131 8 chr4 16718453 16718834 -167569828 - MSTA LTR MaLR 0 428 1 2128 176 15 2 chr4 16718837 16719230 -167569432 - MSTA-int LTR MaLR -2 1649 1252 22 56 0 0 chr4 16719366 16719402 -167569260 + AT_rich Low_complexity Low_complexity 1 36 0 1946 104 4 0 chr4 16719888 16720168 -167568494 - L1PA8 LINE L1 -56 6116 5836 361 100 0 0 chr4 16720168 16720223 -167568439 + L1PA8 LINE L1 6113 6172 0 1033 295 108 16 chr4 16720232 16720676 -167567986 - MLT1H LTR MaLR -64 485 1 29 28 0 0 chr4 16720776 16720812 -167567850 + AT_rich Low_complexity Low_complexity 1 36 0 564 267 0 0 chr4 16720814 16720934 -167567728 - FLAM_A SINE Alu -13 120 1 873 300 83 127 chr4 16721237 16722252 -167566410 - L2 LINE L2 -554 2760 1702 216 0 0 0 chr4 16722252 16722276 -167566386 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 873 300 83 127 chr4 16722276 16723680 -167564982 - L2 LINE L2 -1612 1702 448 458 320 76 31 chr4 16723790 16724015 -167564647 - MIR SINE MIR -26 236 2 1336 206 61 0 chr4 16724109 16724544 -167564118 + MLT2B1 LTR ERVL 2 513 -2 238 336 36 7 chr4 16725005 16725145 -167563517 + L3b LINE CR1 1117 1260 -323 703 161 11 35 chr4 16726124 16726596 -167562066 + (TA)n Simple_repeat Simple_repeat 1 460 0 242 222 0 25 chr4 16726622 16726703 -167561959 + (TATATG)n Simple_repeat Simple_repeat 6 84 0 378 274 143 34 chr4 16726908 16727083 -167561579 + MIR SINE MIR 48 241 -21 1820 134 52 71 chr4 16727460 16727841 -167560821 + THE1C LTR MaLR 2 375 0 944 201 12 85 chr4 16728344 16728512 -167560150 - AluJo SINE Alu -17 295 151 2158 106 10 3 chr4 16728512 16728805 -167559857 - AluSq SINE Alu -18 295 1 944 201 12 85 chr4 16728805 16728895 -167559767 - AluJo SINE Alu -161 151 56 1883 185 9 0 chr4 16728909 16729239 -167559423 + MER61A LTR ERV1 11 343 0 258 155 0 86 chr4 16729239 16729297 -167559365 - AluJo SINE Alu -246 55 3 700 273 81 46 chr4 16729471 16729816 -167558846 - MLT1I LTR MaLR -40 369 13 25 0 0 0 chr4 16729955 16729980 -167558682 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr4 16730279 16730302 -167558360 + AT_rich Low_complexity Low_complexity 1 23 0 9629 29 1 0 chr4 16730909 16732161 -167556501 + L1PA3 LINE L1 4182 5434 -721 6327 30 1 0 chr4 16732264 16733010 -167555652 + L1PA3 LINE L1 5409 6155 0 332 307 34 58 chr4 16733448 16733653 -167555009 + MIR SINE MIR 13 212 -50 215 197 33 0 chr4 16733796 16733857 -167554805 + (TA)n Simple_repeat Simple_repeat 2 64 0 21 100 0 0 chr4 16733932 16734002 -167554660 + AT_rich Low_complexity Low_complexity 1 70 0 1627 234 84 25 chr4 16734389 16734864 -167553798 + MLT1D LTR MaLR 3 505 0 239 370 22 0 chr4 16735188 16735280 -167553382 + L2 LINE L2 3173 3266 -6 1271 263 36 14 chr4 16735474 16735893 -167552769 + MLT1C LTR MaLR 40 467 0 1117 229 36 63 chr4 16736617 16736853 -167551809 - MLT1A1 LTR MaLR 0 365 139 2070 137 73 14 chr4 16736853 16737197 -167551465 + THE1B LTR MaLR 1 364 0 1117 229 36 63 chr4 16737197 16737292 -167551370 - MLT1A1 LTR MaLR -226 139 43 383 242 6 25 chr4 16737812 16737973 -167550689 + GA-rich Low_complexity Low_complexity 3 160 0 1780 192 6 35 chr4 16737982 16738479 -167550183 - L1MB8 LINE L1 -140 6038 5492 456 233 25 104 chr4 16738901 16739141 -167549521 - L1M4b LINE L1 -5921 938 718 651 242 36 23 chr4 16739226 16739445 -167549217 - MER77 LTR ERV1 -9 596 375 1977 173 47 0 chr4 16739967 16740332 -167548330 - MSTB LTR MaLR 0 426 45 2379 73 0 58 chr4 16741315 16741645 -167547017 - AluY SINE Alu 0 311 1 21 36 0 0 chr4 16741870 16741898 -167546764 + AT_rich Low_complexity Low_complexity 1 28 0 2055 113 22 0 chr4 16741898 16742172 -167546490 - AluSx SINE Alu -24 288 9 1853 171 7 0 chr4 16742182 16742474 -167546188 - AluSx SINE Alu -18 294 1 989 277 52 28 chr4 16742536 16742959 -167545703 + MER69 DNA AcHobo 368 800 -426 437 69 81 28 chr4 16743020 16743268 -167545394 + (TA)n Simple_repeat Simple_repeat 1 261 0 208 370 12 0 chr4 16743498 16743579 -167545083 - L2 LINE L2 -2981 333 252 782 291 37 8 chr4 16743983 16744227 -167544435 - MIR SINE MIR -10 252 2 253 323 32 13 chr4 16744294 16744428 -167544234 - MIR SINE MIR -25 183 47 3363 169 9 44 chr4 16744819 16745569 -167543093 - L1MA10 LINE L1 -2 6332 5609 2204 131 0 0 chr4 16746486 16746798 -167541864 + AluSx SINE Alu 1 312 0 1868 104 0 122 chr4 16746808 16747145 -167541517 + AluY SINE Alu 1 296 -5 280 338 45 13 chr4 16748303 16748460 -167540202 - MIR3 SINE MIR -2 206 45 254 348 95 13 chr4 16748522 16748680 -167539982 + MIR SINE MIR 82 252 -10 642 26 0 0 chr4 16749116 16749192 -167539470 + (GGAGA)n Simple_repeat Simple_repeat 4 79 0 287 224 24 0 chr4 16749900 16749985 -167538677 + CT-rich Low_complexity Low_complexity 1 87 0 35 24 0 0 chr4 16750068 16750110 -167538552 + AT_rich Low_complexity Low_complexity 1 42 0 225 230 82 37 chr4 16750238 16750373 -167538289 - L1ME LINE L1 -209 5912 5772 536 316 29 14 chr4 16751167 16751512 -167537150 + L1ME3A LINE L1 904 1253 -4866 445 276 128 64 chr4 16751533 16752555 -167536107 + L1ME3A LINE L1 1287 2371 -3758 212 207 55 28 chr4 16752626 16752771 -167535891 + (TA)n Simple_repeat Simple_repeat 2 150 0 23 92 0 0 chr4 16752903 16752968 -167535694 + AT_rich Low_complexity Low_complexity 1 65 0 23 0 0 0 chr4 16753205 16753228 -167535434 + AT_rich Low_complexity Low_complexity 1 23 0 30 0 0 0 chr4 16753333 16753363 -167535299 + AT_rich Low_complexity Low_complexity 1 30 0 239 271 59 17 chr4 16753674 16753792 -167534870 + L1ME3A LINE L1 2363 2485 -3644 692 247 169 58 chr4 16753948 16754063 -167534599 + L1ME3A LINE L1 5570 5671 -482 1445 149 93 30 chr4 16754063 16754331 -167534331 + AluJb SINE Alu 5 289 -23 2352 48 0 14 chr4 16754335 16754630 -167534032 + AluY SINE Alu 1 291 -20 692 247 169 58 chr4 16754630 16754958 -167533704 + L1ME3A LINE L1 5673 6068 -85 526 311 52 37 chr4 16754994 16755451 -167533211 - HAL1 LINE L1 -7 2500 2037 632 283 60 45 chr4 16755533 16755660 -167533002 - HAL1 LINE L1 -666 1841 1717 293 0 27 0 chr4 16755660 16755697 -167532965 + (TTA)n Simple_repeat Simple_repeat 2 39 0 632 283 60 45 chr4 16755697 16756015 -167532647 - HAL1 LINE L1 -790 1717 1389 809 227 23 46 chr4 16756031 16756055 -167532607 - MER58A DNA MER1_type -2204 216 193 1808 126 71 44 chr4 16756055 16756420 -167532242 + THE1C LTR MaLR 1 375 0 809 227 23 46 chr4 16756420 16756611 -167532051 - MER58A DNA MER1_type -2227 193 6 658 343 94 33 chr4 16756629 16757824 -167530838 - HAL1 LINE L1 -1139 1368 101 328 302 111 5 chr4 16757830 16758019 -167530643 + L1M4 LINE L1 2117 2325 -3821 792 250 6 0 chr4 16758276 16758456 -167530206 + Tigger3(Golem) DNA MER2_type 1 181 -2848 2278 141 88 33 chr4 16758577 16758778 -167529884 + Tigger3(Golem) DNA MER2_type 2512 2700 -329 1766 157 112 45 chr4 16758778 16759179 -167529483 + MSTA LTR MaLR 1 428 0 2278 141 88 33 chr4 16759179 16759258 -167529404 + Tigger3(Golem) DNA MER2_type 2700 2773 -256 2318 104 0 0 chr4 16759258 16759555 -167529107 - AluSp SINE Alu -16 297 1 2278 141 88 33 chr4 16759555 16759763 -167528899 + Tigger3(Golem) DNA MER2_type 2773 3028 -1 216 228 0 0 chr4 16759765 16759822 -167528840 + (TA)n Simple_repeat Simple_repeat 1 57 0 288 0 0 0 chr4 16759857 16759889 -167528773 + (CA)n Simple_repeat Simple_repeat 2 33 0 382 220 20 60 chr4 16760307 16760407 -167528255 - MER58A DNA MER1_type -5 102 7 1368 166 35 94 chr4 16760856 16761175 -167527487 - AluJo SINE Alu -12 300 1 198 333 161 12 chr4 16761175 16761343 -167527319 - MIR SINE MIR -67 195 3 1054 246 130 6 chr4 16761468 16761814 -167526848 - MSTD LTR MaLR -2 394 6 2121 104 19 26 chr4 16762329 16762638 -167526024 + AluSg SINE Alu 1 307 -3 22973 31 1 0 chr4 16763067 16766613 -167522049 - L1PA3 LINE L1 0 6155 2607 17110 43 58 4 chr4 16766713 16769012 -167519650 - L1PA3 LINE L1 -3718 2428 5 254 217 87 122 chr4 16769034 16769142 -167519520 - MIR SINE MIR -49 213 124 2117 111 0 7 chr4 16769142 16769421 -167519241 + AluSg SINE Alu 18 294 -16 254 217 87 122 chr4 16769421 16769523 -167519139 - MIR SINE MIR -138 124 20 342 0 0 0 chr4 16769685 16769723 -167518939 + (CA)n Simple_repeat Simple_repeat 2 39 0 209 321 77 63 chr4 16769793 16770207 -167518455 - L2 LINE L2 -14 3258 2839 341 329 78 18 chr4 16770468 16770635 -167518027 - MIR SINE MIR -16 246 70 1808 94 0 4 chr4 16771681 16771925 -167516737 + AluSq SINE Alu 71 313 0 1411 128 55 0 chr4 16772217 16772435 -167516227 - MER30 DNA MER1_type 0 230 1 2937 73 29 20 chr4 16772450 16772859 -167515803 - L1PA6 LINE L1 -2 6152 5740 22 35 0 0 chr4 16772930 16772959 -167515703 + AT_rich Low_complexity Low_complexity 1 29 0 244 303 83 9 chr4 16773198 16773307 -167515355 + MLT1L LTR MaLR 163 279 -336 446 278 151 36 chr4 16773402 16773787 -167514875 + L1ME3 LINE L1 5715 6143 -19 1902 162 0 16 chr4 16773828 16774143 -167514519 - AluJo SINE Alu -2 310 1 22 56 0 0 chr4 16774502 16774538 -167514124 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr4 16774638 16774660 -167514002 + AT_rich Low_complexity Low_complexity 1 22 0 1138 287 48 28 chr4 16774767 16775205 -167513457 - L1MC4a LINE L1 -1922 5886 5433 1913 136 54 38 chr4 16775205 16775574 -167513088 - THE1C LTR MaLR 0 375 1 1138 287 48 28 chr4 16775574 16775679 -167512983 - L1MC4a LINE L1 -2375 5433 5332 192 40 0 0 chr4 16775699 16775724 -167512938 + (CA)n Simple_repeat Simple_repeat 2 26 0 899 196 0 7 chr4 16776090 16776243 -167512419 - AluJb SINE Alu -27 285 134 591 292 79 10 chr4 16776268 16776470 -167512192 + MIR SINE MIR 9 224 -38 477 297 76 25 chr4 16776499 16776775 -167511887 - L1MC4a LINE L1 -1470 4676 4387 28 61 0 0 chr4 16776883 16776932 -167511730 + AT_rich Low_complexity Low_complexity 1 49 0 4641 159 35 14 chr4 16776965 16777849 -167510813 + L1MC1 LINE L1 5429 6331 -2 1458 167 72 0 chr4 16777858 16778121 -167510541 + AluJo SINE Alu 5 286 -26 213 182 73 0 chr4 16779033 16779088 -167509574 + MIR SINE MIR 83 141 -121 252 313 48 90 chr4 16779100 16779266 -167509396 - MER5B DNA MER1_type 0 178 20 192 267 33 0 chr4 16779276 16779336 -167509326 + MIR3 SINE MIR 143 204 -4 747 269 6 0 chr4 16779556 16779731 -167508931 - MER45A DNA AcHobo -2 176 1 21 0 0 0 chr4 16779970 16779991 -167508671 + AT_rich Low_complexity Low_complexity 1 21 0 480 291 46 7 chr4 16780442 16780593 -167508069 - MIR SINE MIR -93 169 13 2172 124 0 16 chr4 16780769 16781075 -167507587 - AluSx SINE Alu -11 301 1 198 156 0 0 chr4 16781664 16781709 -167506953 + (TG)n Simple_repeat Simple_repeat 2 46 0 758 300 26 13 chr4 16781865 16782168 -167506494 - LTR16B LTR ERVL 0 464 158 282 340 160 7 chr4 16782369 16782513 -167506149 + L2 LINE L2 3107 3272 0 196 274 14 41 chr4 16782537 16782610 -167506052 - L2 LINE L2 -565 2749 2679 427 306 42 47 chr4 16782611 16782804 -167505858 + MIR SINE MIR 8 199 -63 1939 132 57 34 chr4 16782805 16783154 -167505508 + THE1B LTR MaLR 1 357 -7 394 296 63 0 chr4 16783451 16783593 -167505069 - MIR SINE MIR -104 158 8 195 69 0 0 chr4 16783791 16783820 -167504842 + (T)n Simple_repeat Simple_repeat 1 29 0 256 299 35 11 chr4 16783979 16784066 -167504596 + L2 LINE L2 3181 3269 -3 25 0 0 0 chr4 16784116 16784141 -167504521 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr4 16784551 16784575 -167504087 + AT_rich Low_complexity Low_complexity 1 24 0 372 77 0 0 chr4 16785163 16785215 -167503447 + (TCTA)n Simple_repeat Simple_repeat 3 54 0 27 100 0 0 chr4 16785373 16785463 -167503199 + AT_rich Low_complexity Low_complexity 1 90 0 255 246 104 0 chr4 16785463 16785597 -167503065 - L1ME4a LINE L1 -4 6117 5970 2260 97 3 26 chr4 16786928 16787239 -167501423 - AluSx SINE Alu -8 304 1 231 236 173 18 chr4 16787506 16787616 -167501046 + MLT1J1 LTR MaLR 71 197 -249 481 211 0 44 chr4 16787698 16787812 -167500850 + MLT1J2 LTR MaLR 342 450 0 252 0 0 0 chr4 16788152 16788180 -167500482 + (TGAA)n Simple_repeat Simple_repeat 2 29 0 23 0 0 0 chr4 16789385 16789408 -167499254 + AT_rich Low_complexity Low_complexity 1 23 0 328 280 43 60 chr4 16789808 16789976 -167498686 + MIR3 SINE MIR 5 171 -65 197 315 63 45 chr4 16790486 16790597 -167498065 - MIR SINE MIR -62 146 34 1899 175 0 7 chr4 16790689 16790992 -167497670 - AluSx SINE Alu -11 301 1 243 332 194 28 chr4 16791246 16791535 -167497127 + L2 LINE L2 2961 3297 -16 225 0 0 0 chr4 16791537 16791562 -167497100 + (CA)n Simple_repeat Simple_repeat 2 26 0 2175 128 0 10 chr4 16791563 16791875 -167496787 + AluSq SINE Alu 1 309 -4 23 0 0 0 chr4 16792491 16792514 -167496148 + AT_rich Low_complexity Low_complexity 1 23 0 298 301 97 7 chr4 16792638 16792805 -167495857 - MIR SINE MIR -61 201 23 180 283 168 18 chr4 16794412 16794490 -167494172 + L2 LINE L2 3183 3284 -29 2725 138 7 14 chr4 16794490 16794919 -167493743 - MSTA LTR MaLR -2 426 1 180 283 168 18 chr4 16794919 16794953 -167493709 + L2 LINE L2 3284 3312 -1 208 313 104 77 chr4 16796252 16796434 -167492228 - L2 LINE L2 0 3272 3086 4329 70 29 84 chr4 16796739 16797463 -167491199 - L1PA12 LINE L1 -3 6165 5482 1094 93 0 6 chr4 16797463 16797625 -167491037 + L1PA12 LINE L1 5322 5482 -681 276 29 0 0 chr4 16797798 16797832 -167490830 - MLT2A1 LTR ERVL 0 444 411 614 107 46 23 chr4 16797955 16798247 -167490415 + (TA)n Simple_repeat Simple_repeat 1 298 0 554 323 74 31 chr4 16798454 16798844 -167489818 - MLT1I LTR MaLR -2 407 1 1998 130 0 47 chr4 16799075 16799397 -167489265 - AluSx SINE Alu -5 307 1 507 237 26 0 chr4 16800088 16800202 -167488460 - MLT1H1 LTR MaLR -2 553 437 477 265 113 27 chr4 16800196 16800381 -167488281 - MER63A DNA MER1_type -8 202 2 * 1353 256 86 52 chr4 16800381 16800585 -167488077 - MLT1H1 LTR MaLR -124 431 236 2091 124 3 3 chr4 16800585 16800884 -167487778 - AluSq SINE Alu -12 301 3 1353 256 86 52 chr4 16800884 16801084 -167487578 - MLT1H1 LTR MaLR -319 236 13 297 0 0 0 chr4 16801095 16801128 -167487534 + (CA)n Simple_repeat Simple_repeat 2 34 0 284 314 0 0 chr4 16801132 16801218 -167487444 + L2 LINE L2 2285 2370 -944 234 327 46 26 chr4 16801320 16801473 -167487189 - MLT1J1 LTR MaLR -132 314 159 243 0 0 0 chr4 16802776 16802803 -167485859 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 671 304 137 20 chr4 16802826 16803132 -167485530 - MLT1J2 LTR MaLR -4 446 105 2129 121 0 7 chr4 16803306 16803604 -167485058 + AluSx SINE Alu 1 296 -16 198 347 88 49 chr4 16803615 16804001 -167484661 + L2 LINE L2 2489 2889 -425 272 101 14 87 chr4 16804005 16804074 -167484588 - L1MD2 LINE L1 -3 6356 6293 3001 203 31 3 chr4 16804512 16805093 -167483569 + MER77 LTR ERV1 1 597 -8 183 300 92 46 chr4 16805119 16805249 -167483413 + MIR SINE MIR 76 211 -51 331 283 116 51 chr4 16805292 16805585 -167483077 - L1ME4a LINE L1 -246 5875 5564 22 0 0 0 chr4 16806956 16806978 -167481684 + AT_rich Low_complexity Low_complexity 1 22 0 436 312 47 24 chr4 16807006 16807176 -167481486 + MIR SINE MIR 52 225 -37 296 302 37 34 chr4 16808089 16808261 -167480401 - MIR SINE MIR -64 144 3 2448 82 26 0 chr4 16808902 16809243 -167479419 - L1PB1 LINE L1 -1 6150 5801 180 348 34 11 chr4 16809276 16809365 -167479297 + MIR SINE MIR 21 111 -97 330 297 35 83 chr4 16809380 16809525 -167479137 + MER5A DNA MER1_type 25 167 -16 351 357 60 36 chr4 16809610 16809778 -167478884 + MER5A DNA MER1_type 17 188 -1 222 337 105 0 chr4 16809813 16809908 -167478754 + MIR SINE MIR 151 255 -7 1171 211 24 124 chr4 16812010 16812422 -167476240 - MLT1A2 LTR MaLR 0 374 4 1529 186 33 19 chr4 16812870 16813177 -167475485 + AluJb SINE Alu 1 311 -1 529 227 76 11 chr4 16813431 16813718 -167474944 + MER93b LTR ERV1 39 373 0 229 203 101 0 chr4 16813794 16813863 -167474799 - L1MC4 LINE L1 -138 7904 7829 229 259 25 25 chr4 16813905 16813986 -167474676 - L1ME2 LINE L1 -10 6088 6008 2076 239 53 29 chr4 16813988 16814865 -167473797 - L1ME2 LINE L1 -141 5957 5057 1432 304 29 45 chr4 16816294 16816961 -167471701 - MER70-int LTR ERVL -1550 3473 2818 522 311 165 20 chr4 16817345 16817696 -167470966 - MER70-int LTR ERVL -2278 2745 2344 1674 262 32 21 chr4 16817696 16818323 -167470339 - L1ME2 LINE L1 -1060 5020 4387 1314 323 38 30 chr4 16818339 16819097 -167469565 - L1ME2 LINE L1 -5296 774 11 21 0 0 0 chr4 16821841 16821862 -167466800 + AT_rich Low_complexity Low_complexity 1 21 0 388 136 0 0 chr4 16822811 16822870 -167465792 - AluJb SINE Alu -8 294 236 1282 136 0 0 chr4 16822870 16823047 -167465615 - AluJb SINE Alu -133 179 3 186 258 16 32 chr4 16823203 16823265 -167465397 + L2 LINE L2 2698 2758 -556 1115 250 34 17 chr4 16823298 16823594 -167465068 - MSTB2 LTR MaLR 0 457 157 276 111 0 22 chr4 16823872 16823917 -167464745 - MSTB2 LTR MaLR -352 44 1 1260 119 0 0 chr4 16824323 16824500 -167464162 - AluY SINE Alu -3 308 132 1791 129 24 0 chr4 16824500 16824748 -167463914 - AluSg SINE Alu -56 254 1 412 282 38 8 chr4 16824754 16824885 -167463777 - MER63 DNA MER1_type -298 764 4 1400 173 58 18 chr4 16824935 16825213 -167463449 - AluJo SINE Alu -23 289 1 211 364 190 8 chr4 16825620 16825741 -167462921 + L2 LINE L2 3128 3270 -2 294 247 12 12 chr4 16825765 16825846 -167462816 + MER92C LTR ERV1 1 81 -473 362 135 0 27 chr4 16825848 16825922 -167462740 + MER92A LTR ERV1 341 412 0 317 301 19 10 chr4 16826145 16826248 -167462414 + MER5A DNA MER1_type 80 183 -6 438 329 47 6 chr4 16827195 16827365 -167461297 - MIR SINE MIR -73 189 13 210 356 0 0 chr4 16827634 16827693 -167460969 + MIR SINE MIR 20 78 -184 25 65 0 0 chr4 16828309 16828355 -167460307 + AT_rich Low_complexity Low_complexity 1 46 0 219 295 124 55 chr4 16828366 16828422 -167460240 - MIR SINE MIR -5 257 206 1849 187 53 11 chr4 16828422 16828796 -167459866 - MLT1B LTR MaLR 0 390 1 219 295 124 55 chr4 16828796 16828956 -167459706 - MIR SINE MIR -56 206 26 1651 196 45 39 chr4 16829310 16829667 -167458995 - MLT1A2 LTR MaLR -15 359 1 427 228 89 24 chr4 16830694 16830817 -167457845 + L1ME LINE L1 5684 5814 -307 787 325 8 8 chr4 16832545 16832794 -167455868 + MIR SINE MIR 11 259 -3 527 273 111 30 chr4 16832909 16833107 -167455555 + MER58C DNA MER1_type 2 215 0 365 344 47 0 chr4 16833460 16833588 -167455074 - MIR SINE MIR -81 181 48 282 160 0 0 chr4 16834334 16834384 -167454278 + (TG)n Simple_repeat Simple_repeat 1 50 0 1445 268 56 39 chr4 16834399 16834933 -167453729 - MER119 DNA MER1_type -1 582 40 575 502 154 4 chr4 16834946 16835199 -167453463 - AluJb SINE Alu -11 291 1 770 272 142 30 chr4 16835486 16835824 -167452838 + L1MEc LINE L1 37 412 -5984 369 313 19 6 chr4 16835970 16836130 -167452532 + L1MEc LINE L1 604 765 -5631 713 191 64 38 chr4 16836137 16836372 -167452290 - L1MEc LINE L1 -4063 2333 2093 267 293 61 0 chr4 16836403 16836485 -167452177 - HERV16 LTR ERVL -4908 88 2 338 236 39 0 chr4 16837181 16837279 -167451383 - MLT1H LTR MaLR -2 593 460 334 287 183 12 chr4 16838646 16838810 -167449852 - MIR SINE MIR -15 247 56 473 330 53 13 chr4 16838884 16839111 -167449551 + MIR SINE MIR 2 237 -25 399 152 0 15 chr4 16839217 16839283 -167449379 + Tigger2 DNA MER2_type 4 68 -2650 * 2232 124 8 153 chr4 16839274 16839796 -167448866 + Tigger2 DNA MER2_type 2273 2718 0 322 280 186 38 chr4 16839809 16840073 -167448589 + L2 LINE L2 3006 3308 -5 28 0 0 0 chr4 16840074 16840102 -167448560 + AT_rich Low_complexity Low_complexity 1 28 0 1860 187 18 33 chr4 16840139 16840263 -167448399 + MLT1B LTR MaLR 1 125 -265 1475 213 33 35 chr4 16840263 16840629 -167448033 - MLT1A1 LTR MaLR 0 365 1 1860 187 18 33 chr4 16840629 16840900 -167447762 + MLT1B LTR MaLR 125 390 0 1762 115 8 0 chr4 16841188 16841449 -167447213 - L1PA10 LINE L1 -1 6167 5905 278 54 0 0 chr4 16841449 16841486 -167447176 + L1PA8A LINE L1 5586 5622 -509 536 280 70 0 chr4 16842161 16842318 -167446344 + MER5A DNA MER1_type 1 168 -21 252 127 0 133 chr4 16842505 16842565 -167446097 + AluSp SINE Alu 123 170 -133 23 0 0 0 chr4 17043522 17043545 -167245117 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr4 17043583 17043620 -167245042 + AT_rich Low_complexity Low_complexity 1 37 0 389 270 108 45 chr4 17043773 17043995 -167244667 + MIR SINE MIR 21 256 -6 201 108 0 0 chr4 17044081 17044118 -167244544 + (T)n Simple_repeat Simple_repeat 1 37 0 276 310 115 11 chr4 17044379 17044553 -167244109 + MIR SINE MIR 69 260 -2 46 62 0 0 chr4 17044650 17044731 -167243931 + AT_rich Low_complexity Low_complexity 1 81 0 2120 32 0 0 chr4 17044744 17044991 -167243671 - L1PA5 LINE L1 -8 6146 5900 765 287 68 45 chr4 17045195 17046663 -167241999 - L1ME3A LINE L1 -230 5923 4421 462 381 115 19 chr4 17047055 17047535 -167241127 - L1ME3A LINE L1 -5537 582 57 362 289 58 58 chr4 17048723 17048896 -167239766 + MIR SINE MIR 86 258 -4 272 229 60 36 chr4 17049354 17049437 -167239225 + MLT1I LTR MaLR 128 212 -197 281 344 57 38 chr4 17049645 17049802 -167238860 + MIR SINE MIR 103 262 0 27 29 0 0 chr4 17050349 17050383 -167238279 + AT_rich Low_complexity Low_complexity 1 34 0 39 68 0 19 chr4 17051115 17051175 -167237487 + AT_rich Low_complexity Low_complexity 1 60 -41 193 0 94 0 chr4 17051175 17051207 -167237455 + A-rich Low_complexity Low_complexity 3 37 0 39 68 0 19 chr4 17051207 17051249 -167237413 + AT_rich Low_complexity Low_complexity 60 101 0 249 260 71 63 chr4 17051304 17051431 -167237231 - MIR3 SINE MIR -66 142 15 467 236 35 7 chr4 17052069 17052213 -167236449 + MER65A LTR ERV1 1 148 -297 842 204 7 0 chr4 17052331 17052483 -167236179 + FRAM SINE Alu 4 156 -10 526 303 114 13 chr4 17052782 17053010 -167235652 + MIR SINE MIR 12 262 0 187 281 198 31 chr4 17053027 17053123 -167235539 - MIR SINE MIR -148 114 3 2105 113 61 28 chr4 17053801 17054164 -167234498 - THE1C LTR MaLR 0 375 1 270 0 0 0 chr4 17054273 17054303 -167234359 + (TG)n Simple_repeat Simple_repeat 2 31 0 735 174 37 0 chr4 17055137 17055327 -167233335 + Charlie5 DNA MER1_type 2367 2563 -49 354 309 24 0 chr4 17055409 17055535 -167233127 + MER94 DNA DNA 1 129 -5 2563 105 8 3 chr4 17056418 17056779 -167231883 - THE1B LTR MaLR -1 363 1 239 367 39 33 chr4 17056799 17056979 -167231683 + L2 LINE L2 2919 3099 -173 258 259 39 49 chr4 17057178 17057314 -167231348 - MIR SINE MIR -63 145 50 380 284 35 7 chr4 17058550 17058691 -167229971 - MIR SINE MIR -86 176 32 927 265 77 8 chr4 17059033 17059267 -167229395 - MIR SINE MIR 0 262 13 182 250 0 39 chr4 17059538 17059590 -167229072 + L2 LINE L2 3264 3313 0 2533 67 3 0 chr4 17060027 17060355 -167228307 - L1PA8 LINE L1 -6 6166 5838 209 274 34 120 chr4 17060398 17060515 -167228147 + MIR SINE MIR 21 127 -81 2258 213 65 37 chr4 17061514 17061921 -167226741 - MLT1E LTR MaLR 0 593 164 1312 132 44 31 chr4 17061921 17062148 -167226514 + MER30 DNA MER1_type 1 230 0 2258 213 65 37 chr4 17062148 17062314 -167226348 - MLT1E LTR MaLR -429 164 4 206 283 59 59 chr4 17062317 17062469 -167226193 - MIR SINE MIR -61 201 50 200 327 96 0 chr4 17062560 17062664 -167225998 - MIR SINE MIR -26 236 123 681 224 53 0 chr4 17062715 17062885 -167225777 + MIR SINE MIR 74 252 -10 2073 119 10 3 chr4 17062941 17063235 -167225427 + AluSc SINE Alu 1 296 -13 583 293 5 50 chr4 17063812 17064010 -167224652 + MIR SINE MIR 20 208 -54 22 0 0 0 chr4 17064258 17064280 -167224382 + AT_rich Low_complexity Low_complexity 1 22 0 257 301 130 63 chr4 17065540 17065779 -167222883 - MIR SINE MIR -2 260 6 518 206 115 57 chr4 17066120 17066329 -167222333 + LTR50 LTR ERVL 3 223 -572 407 305 51 0 chr4 17066378 17066555 -167222107 + LTR33A LTR ERVL 337 522 -1 242 218 18 18 chr4 17066601 17066656 -167222006 - L3 LINE CR1 -4 1573 1519 2297 135 13 19 chr4 17066697 17067074 -167221588 - THE1C LTR MaLR 0 375 1 9218 124 51 39 chr4 17067074 17068632 -167220030 - THE1C-int LTR MaLR 0 1580 3 2556 111 8 13 chr4 17068634 17069011 -167219651 - THE1C LTR MaLR 0 375 1 311 265 0 29 chr4 17069464 17069566 -167219096 + (TTCA)n Simple_repeat Simple_repeat 3 101 0 444 319 115 30 chr4 17070369 17070769 -167217893 - L2 LINE L2 -209 3063 2618 408 158 0 0 chr4 17071459 17071535 -167217127 + CT-rich Low_complexity Low_complexity 1 76 0 180 306 121 48 chr4 17071871 17071995 -167216667 - L2 LINE L2 -3 3269 3137 333 47 0 0 chr4 17072031 17072074 -167216588 + (TC)n Simple_repeat Simple_repeat 2 44 0 315 0 0 0 chr4 17072073 17072108 -167216554 + (TA)n Simple_repeat Simple_repeat 2 36 0 * 296 295 65 29 chr4 17072147 17072286 -167216376 + MIR SINE MIR 119 262 0 1618 134 33 39 chr4 17072494 17072801 -167215861 - THE1C LTR MaLR -69 306 2 811 327 147 7 chr4 17073358 17073889 -167214773 + L2 LINE L2 2455 3060 -253 265 253 27 13 chr4 17073880 17073955 -167214707 - L2 LINE L2 -614 2700 2625 * 201 279 16 16 chr4 17073981 17074042 -167214620 + L2 LINE L2 3193 3253 -60 1703 160 7 24 chr4 17074976 17075295 -167213367 + AluSx SINE Alu 2 315 0 3068 16 0 0 chr4 17075295 17075662 -167213000 + L1HS LINE L1 5789 6155 0 188 33 0 33 chr4 17075667 17075697 -167212965 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 186 239 23 23 chr4 17075769 17075857 -167212805 + CT-rich Low_complexity Low_complexity 3 90 0 354 281 9 44 chr4 17075971 17076085 -167212577 - MLT1K LTR MaLR -290 298 189 196 281 47 31 chr4 17077153 17077217 -167211445 - MIR3 SINE MIR 0 208 144 25 0 0 0 chr4 17077353 17077378 -167211284 + AT_rich Low_complexity Low_complexity 1 25 0 1903 185 111 36 chr4 17077426 17077507 -167211155 + MLT1D LTR MaLR 1 75 -430 189 0 0 0 chr4 17077507 17077528 -167211134 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 1903 185 111 36 chr4 17077528 17077916 -167210746 + MLT1D LTR MaLR 75 505 0 271 235 20 49 chr4 17078010 17078112 -167210550 + CT-rich Low_complexity Low_complexity 4 102 0 354 351 21 12 chr4 17078165 17078331 -167210331 - MIR SINE MIR -35 227 58 420 290 109 5 chr4 17078657 17078850 -167209812 - MIR SINE MIR -12 250 38 412 280 32 54 chr4 17079290 17079476 -167209186 + MIR SINE MIR 3 184 -78 827 142 7 0 chr4 17079555 17079696 -167208966 + L1PA16 LINE L1 6024 6165 -1 260 306 107 46 chr4 17080407 17080603 -167208059 - L2 LINE L2 -7 3306 3099 437 329 61 0 chr4 17080655 17080819 -167207843 - L2 LINE L2 -215 3098 2925 195 250 67 17 chr4 17080983 17081043 -167207619 - L2 LINE L2 -1507 1807 1745 291 337 122 10 chr4 17081052 17081248 -167207414 + L2 LINE L2 2312 2529 -785 410 347 7 13 chr4 17082189 17082339 -167206323 - MIR SINE MIR -68 194 46 723 281 92 4 chr4 17082787 17083015 -167205647 + MIR SINE MIR 14 261 -1 204 342 103 8 chr4 17083049 17083166 -167205496 + MIR SINE MIR 109 236 -26 393 321 52 44 chr4 17083844 17084093 -167204569 - L2 LINE L2 -165 3148 2898 1123 212 9 0 chr4 17084187 17084399 -167204263 - MER58A DNA MER1_type -1 223 10 418 306 114 40 chr4 17084441 17084855 -167203807 + MLT1G LTR MaLR 1 410 -180 381 146 30 3 chr4 17084889 17084977 -167203685 + MLT1G LTR MaLR 463 549 0 531 200 0 0 chr4 17085171 17085266 -167203396 + THE1C LTR MaLR 38 132 -243 926 230 33 15 chr4 17085271 17085602 -167203060 - L1MDb LINE L1 -5203 1340 1004 320 250 33 25 chr4 17086005 17086125 -167202537 - L1MDb LINE L1 -6358 182 62 2689 102 5 3 chr4 17086331 17086705 -167201957 + THE1C LTR MaLR 1 375 0 237 139 0 0 chr4 17087184 17087227 -167201435 + (TG)n Simple_repeat Simple_repeat 2 44 0 1689 168 10 10 chr4 17087644 17087996 -167200666 - L1MA8 LINE L1 0 6297 5959 474 266 112 48 chr4 17089304 17089492 -167199170 + MIR SINE MIR 45 244 -18 205 83 0 28 chr4 17089572 17089608 -167199054 + (TTTTG)n Simple_repeat Simple_repeat 4 38 0 184 246 54 78 chr4 17089907 17090074 -167198588 - L2 LINE L2 -538 2776 2614 257 312 1 84 chr4 17090616 17090758 -167197904 + MIR3 SINE MIR 11 143 -73 181 255 0 20 chr4 17090844 17090895 -167197767 - L2 LINE L2 0 3313 3264 1685 137 24 27 chr4 17092156 17092448 -167196214 - MER7A DNA MER2_type -1 345 57 2135 100 14 14 chr4 17092448 17092738 -167195924 + AluSq SINE Alu 1 290 -23 203 246 217 0 chr4 17093205 17093274 -167195388 + MIR SINE MIR 38 121 -141 1245 210 38 7 chr4 17093274 17093564 -167195098 - MLT1D LTR MaLR 0 505 207 40808 35 21 1 chr4 17093618 17099648 -167189014 + L1PA2 LINE L1 1 6155 0 584 230 37 31 chr4 17099669 17099830 -167188832 - MLT1D LTR MaLR -341 164 3 270 193 0 0 chr4 17099904 17099961 -167188701 + (CA)n Simple_repeat Simple_repeat 2 58 0 1762 202 26 0 chr4 17100252 17100629 -167188033 + MER57A LTR ERV1 8 394 -9 2243 133 0 0 chr4 17100713 17101021 -167187641 - AluSx SINE Alu 0 312 5 1195 242 78 14 chr4 17101672 17102032 -167186630 + L2 LINE L2 1589 1971 -1343 581 217 37 136 chr4 17102068 17102286 -167186376 - L1 LINE L1 -870 5276 5038 1941 181 56 17 chr4 17102286 17102696 -167185966 - MSTB LTR MaLR 0 426 1 581 217 37 136 chr4 17102696 17102733 -167185929 - L1 LINE L1 -1108 5038 4999 309 86 0 69 chr4 17102733 17102791 -167185871 + AluSc SINE Alu 242 295 -4 581 217 37 136 chr4 17102791 17102954 -167185708 - L1 LINE L1 -1147 4999 4864 * 3437 201 42 15 chr4 17102953 17103816 -167184846 + L1MB4 LINE L1 5288 6173 -7 999 293 87 15 chr4 17103845 17104234 -167184428 + L2 LINE L2 2037 2453 -861 606 281 26 1 chr4 17104765 17104936 -167183726 + MIR SINE MIR 19 192 -63 3637 144 8 16 chr4 17105148 17105766 -167182896 - L1PA15 LINE L1 -21 6144 5532 225 262 16 49 chr4 17106726 17106787 -167181875 + L2 LINE L2 3132 3190 -82 216 304 14 0 chr4 17106833 17106902 -167181760 + MIR SINE MIR 78 147 -115 540 160 0 0 chr4 17107025 17107125 -167181537 + CT-rich Low_complexity Low_complexity 1 100 0 205 156 0 44 chr4 17108071 17108116 -167180546 + (CATATA)n Simple_repeat Simple_repeat 1 43 0 200 268 0 0 chr4 17109746 17109787 -167178875 - L2 LINE L2 -832 2482 2442 286 327 27 33 chr4 17109862 17110012 -167178650 - MIR SINE MIR -14 248 100 1577 197 13 26 chr4 17110041 17110345 -167178317 + AluJb SINE Alu 1 300 -12 21 0 0 0 chr4 17110517 17110538 -167178124 + AT_rich Low_complexity Low_complexity 1 21 0 183 365 167 0 chr4 17110573 17110729 -167177933 + L2 LINE L2 2954 3135 -178 267 31 0 0 chr4 17110756 17110788 -167177874 + (CA)n Simple_repeat Simple_repeat 1 32 0 825 224 20 15 chr4 17110808 17111004 -167177658 - MER20 DNA MER1_type -22 197 1 245 274 108 29 chr4 17111070 17111153 -167177509 + L2 LINE L2 3204 3298 -15 1813 179 3 3 chr4 17111153 17111460 -167177202 + AluJo SINE Alu 1 307 -5 245 274 108 29 chr4 17111460 17111478 -167177184 + L2 LINE L2 3298 3313 0 901 147 88 0 chr4 17111529 17111712 -167176950 - AluSq SINE Alu 0 330 136 337 250 91 74 chr4 17111742 17111918 -167176744 - MIR SINE MIR -79 183 5 185 342 25 0 chr4 17112076 17112155 -167176507 + L2 LINE L2 2429 2509 -805 334 343 57 43 chr4 17112155 17112365 -167176297 + L2 LINE L2 2761 2973 -341 504 241 9 0 chr4 17112370 17112478 -167176184 + MER58A DNA MER1_type 45 153 0 246 253 58 46 chr4 17113504 17113591 -167175071 - MLT1I LTR MaLR -258 151 64 1915 214 59 5 chr4 17114143 17114586 -167174076 - MLT1C LTR MaLR 0 467 1 525 270 79 60 chr4 17114625 17114877 -167173785 - MIR SINE MIR 0 262 6 1280 292 65 66 chr4 17115659 17116489 -167172173 + L2 LINE L2 2129 3289 -24 247 290 105 20 chr4 17116957 17117157 -167171505 - L1ME LINE L1 -284 5837 5621 315 278 137 34 chr4 17117275 17117480 -167171182 - L1ME LINE L1 -786 5573 5348 213 286 16 0 chr4 17117631 17117694 -167170968 + CT-rich Low_complexity Low_complexity 1 64 0 804 65 0 0 chr4 17117704 17117811 -167170851 + (TTCC)n Simple_repeat Simple_repeat 4 110 0 724 253 6 6 chr4 17117816 17117974 -167170688 - AluJo SINE Alu -34 278 121 279 173 0 0 chr4 17118084 17118136 -167170526 + (TA)n Simple_repeat Simple_repeat 1 52 0 270 0 0 0 chr4 17118151 17118181 -167170481 + (CA)n Simple_repeat Simple_repeat 2 31 0 477 290 6 22 chr4 17118181 17118203 -167170459 - MLT2B1 LTR ERVL -42 478 457 243 0 0 0 chr4 17118203 17118230 -167170432 + (GA)n Simple_repeat Simple_repeat 2 28 0 477 290 6 22 chr4 17118230 17118390 -167170272 - MLT2B1 LTR ERVL -63 457 299 845 113 7 0 chr4 17118451 17118473 -167170189 + (TTCCC)n Simple_repeat Simple_repeat 1 164 0 845 113 7 0 chr4 17118473 17118614 -167170048 + (TTCCC)n Simple_repeat Simple_repeat 4 145 0 182 118 29 0 chr4 17118841 17118875 -167169787 + T-rich Low_complexity Low_complexity 4 38 0 770 223 26 10 chr4 17118880 17119073 -167169589 - MLT2D LTR ERVL -218 196 1 290 266 169 64 chr4 17119684 17119951 -167168711 - MLT1H LTR MaLR -254 295 1 495 171 8 17 chr4 17120456 17120573 -167168089 + GA-rich Low_complexity Low_complexity 2 117 0 342 115 0 0 chr4 17120573 17120625 -167168037 + (GGAGA)n Simple_repeat Simple_repeat 4 55 0 318 345 9 9 chr4 17120972 17121085 -167167577 - L2 LINE L2 -9 3263 3151 225 196 0 0 chr4 17121716 17121762 -167166900 + MLT1-int LTR MaLR 1211 1256 -115 2169 84 42 11 chr4 17121892 17122178 -167166484 + AluY SINE Alu 1 295 -16 620 117 0 26 chr4 17122178 17122332 -167166330 + (TA)n Simple_repeat Simple_repeat 1 150 0 220 364 136 0 chr4 17122602 17122720 -167165942 + L2 LINE L2 3102 3235 -37 641 291 39 6 chr4 17123079 17123261 -167165401 - MIR SINE MIR -57 205 18 262 325 108 30 chr4 17123500 17123703 -167164959 + MIR SINE MIR 25 243 -19 239 346 40 0 chr4 17124627 17124728 -167163934 - MIR3 SINE MIR -14 194 90 1486 226 31 19 chr4 17124945 17125360 -167163302 + L1ME3 LINE L1 5626 6045 -117 2015 152 0 0 chr4 17125393 17125720 -167162942 - AluSx SINE Alu 0 327 1 22 0 0 0 chr4 17125905 17125927 -167162735 + AT_rich Low_complexity Low_complexity 1 22 0 468 0 0 0 chr4 17126207 17126259 -167162403 + (CA)n Simple_repeat Simple_repeat 2 53 0 317 255 64 0 chr4 17126286 17126380 -167162282 - MER5A DNA MER1_type -81 108 9 2261 132 28 17 chr4 17126423 17126779 -167161883 - THE1B LTR MaLR -4 360 1 1871 201 9 5 chr4 17126887 17127319 -167161343 - L1P LINE L1 -1352 4794 4361 245 170 57 0 chr4 17127524 17127577 -167161085 - MIR SINE MIR -71 191 136 283 340 73 20 chr4 17127585 17127735 -167160927 - MIR SINE MIR 0 262 105 278 307 54 60 chr4 17128223 17128389 -167160273 + MIR3 SINE MIR 5 169 -39 359 225 146 0 chr4 17128524 17128613 -167160049 + L2 LINE L2 3169 3270 -2 362 312 106 16 chr4 17129135 17129324 -167159338 - L1MC4 LINE L1 -1 8041 7836 257 306 18 63 chr4 17129543 17129654 -167159008 - MIR SINE MIR -70 192 87 252 351 99 0 chr4 17129813 17129924 -167158738 + MER5B DNA MER1_type 56 177 -1 318 26 0 0 chr4 17130542 17130581 -167158081 + (TG)n Simple_repeat Simple_repeat 2 40 0 2740 182 42 51 chr4 17130612 17131333 -167157329 + Tigger2 DNA MER2_type 31 744 -1974 1176 148 80 0 chr4 17131388 17131625 -167157037 + Tigger2 DNA MER2_type 2463 2718 0 834 182 45 0 chr4 17131637 17131791 -167156871 - Tigger3(Golem) DNA MER2_type 0 3037 2877 292 232 0 0 chr4 17131791 17131847 -167156815 - Tigger3(Golem) DNA MER2_type -2972 57 2 2013 170 0 0 chr4 17132046 17132357 -167156305 + AluSx SINE Alu 1 311 -1 306 308 91 71 chr4 17132418 17132671 -167155991 + L3 LINE CR1 1237 1494 -83 180 379 0 11 chr4 17132909 17132996 -167155666 - L2 LINE L2 -532 2782 2697 219 265 171 72 chr4 17133176 17133327 -167155335 + MIR SINE MIR 15 188 -74 2147 87 10 42 chr4 17133327 17133636 -167155026 + AluSx SINE Alu 1 299 -13 219 265 171 72 chr4 17133636 17133665 -167154997 + MIR SINE MIR 188 213 -49 208 316 158 15 chr4 17134380 17134513 -167154149 + L2 LINE L2 2562 2713 -601 2386 66 0 13 chr4 17134914 17135218 -167153444 + AluY SINE Alu 3 302 -9 288 203 0 0 chr4 17135429 17135484 -167153178 + MLT1B LTR MaLR 1 55 -335 1990 143 14 25 chr4 17135484 17135849 -167152813 - THE1C LTR MaLR 0 375 15 694 256 11 66 chr4 17135873 17136146 -167152516 + MLT1B LTR MaLR 66 323 -67 1918 21 0 13 chr4 17136146 17136384 -167152278 - L1PA6 LINE L1 -184 5970 5736 1260 70 0 12 chr4 17136384 17136537 -167152125 + L1PA6 LINE L1 5982 6150 -4 393 176 0 0 chr4 17136539 17136613 -167152049 + MLT1B LTR MaLR 317 390 0 601 292 36 16 chr4 17136677 17136869 -167151793 - MER63A DNA MER1_type -9 201 6 21 0 0 0 chr4 17137009 17137030 -167151632 + AT_rich Low_complexity Low_complexity 1 21 0 296 286 132 0 chr4 17137109 17137200 -167151462 + L2 LINE L2 3141 3243 -29 948 188 61 14 chr4 17138435 17138712 -167149950 + MER33 DNA MER1_type 1 290 -34 532 293 98 18 chr4 17139513 17139738 -167148924 + MIR SINE MIR 13 255 -7 466 345 59 18 chr4 17140572 17140880 -167147782 - L2 LINE L2 -217 3055 2737 24 32 0 0 chr4 17140940 17140971 -167147691 + AT_rich Low_complexity Low_complexity 1 31 0 424 271 117 59 chr4 17141328 17141835 -167146827 - MLT1K LTR MaLR -2 586 13 397 42 0 0 chr4 17142197 17142245 -167146417 - L1PA6 LINE L1 -13 6141 6094 309 109 0 0 chr4 17142444 17142490 -167146172 + (TATG)n Simple_repeat Simple_repeat 3 48 0 296 410 11 0 chr4 17142563 17142751 -167145911 + MIR SINE MIR 47 236 -26 241 351 40 14 chr4 17142790 17142864 -167145798 - L2 LINE L2 -31 3282 3207 624 27 0 0 chr4 17143217 17143291 -167145371 + (TTTCC)n Simple_repeat Simple_repeat 3 76 0 816 199 0 0 chr4 17143350 17143486 -167145176 - AluJb SINE Alu -21 291 156 306 395 109 8 chr4 17144275 17144634 -167144028 - L2 LINE L2 -784 2530 2136 211 350 0 0 chr4 17144997 17145057 -167143605 + L2 LINE L2 3210 3269 -3 2254 66 0 11 chr4 17145527 17145845 -167142817 - AluY SINE Alu 0 315 1 265 269 92 54 chr4 17146516 17146646 -167142016 - MLT1K LTR MaLR -116 472 338 643 262 30 18 chr4 17147803 17147967 -167140695 - MER45A DNA AcHobo -7 171 6 * 889 304 88 29 chr4 17147966 17148374 -167140288 + LTR16A LTR ERVL 19 450 0 288 0 0 0 chr4 17149569 17149601 -167139061 + (A)n Simple_repeat Simple_repeat 1 32 0 6127 194 25 18 chr4 17149799 17151115 -167137547 - L1P LINE L1 -1399 4747 3422 746 125 0 0 chr4 17151118 17151238 -167137424 + L1PA15 LINE L1 6046 6165 0 314 309 105 40 chr4 17151327 17151479 -167137183 + MIR SINE MIR 20 181 -81 1833 109 54 93 chr4 17152618 17153004 -167135658 - THE1C LTR MaLR 0 375 5 1848 130 28 7 chr4 17153391 17153676 -167134986 - AluSg SINE Alu -19 291 1 23 0 0 0 chr4 17154197 17154220 -167134442 + AT_rich Low_complexity Low_complexity 1 23 0 766 124 9 0 chr4 17154561 17154674 -167133988 - AluSg1 SINE Alu -195 114 1 413 294 44 40 chr4 17154969 17155244 -167133418 - HAL1 LINE L1 0 2507 2232 1381 281 78 25 chr4 17155280 17155807 -167132855 + MLT1H1 LTR MaLR 1 555 0 216 250 0 111 chr4 17156100 17156172 -167132490 + MIR SINE MIR 126 189 -73 271 237 24 124 chr4 17156548 17156717 -167131945 + MLT1H1-int LTR MaLR 1443 1594 -141 726 275 126 33 chr4 17156826 17157160 -167131502 + MLT1H1 LTR MaLR 1 365 -190 220 318 47 51 chr4 17157823 17157945 -167130717 - MIR SINE MIR -79 129 6 470 301 18 0 chr4 17158045 17158208 -167130454 + MIR SINE MIR 47 212 -50 534 347 20 5 chr4 17158299 17158495 -167130167 + MIR SINE MIR 15 213 -49 1986 161 0 0 chr4 17159226 17159517 -167129145 - AluSx SINE Alu -19 293 3 266 308 100 17 chr4 17159541 17159661 -167129001 - L2 LINE L2 -38 3275 3146 214 310 11 46 chr4 17159779 17159866 -167128796 - L2 LINE L2 0 3313 3230 430 262 83 16 chr4 17160018 17160181 -167128481 + L1PB4 LINE L1 5982 6150 -6 290 359 116 15 chr4 17160224 17160483 -167128179 - L2 LINE L2 -451 2863 2579 464 265 14 104 chr4 17160638 17160849 -167127813 + MIR SINE MIR 70 261 -1 472 300 124 27 chr4 17161287 17161657 -167127005 + HAL1b LINE L1 72 477 -871 2182 146 50 19 chr4 17161694 17162111 -167126551 - MSTB1 LTR MaLR -2 430 1 1948 163 37 3 chr4 17162111 17162458 -167126204 + MER47A DNA MER2_type 5 365 -1 412 267 95 60 chr4 17162485 17162950 -167125712 + HAL1b LINE L1 578 1058 -290 467 322 60 20 chr4 17163133 17163332 -167125330 - MIR SINE MIR -15 247 41 310 197 13 26 chr4 17163399 17163475 -167125187 - L1MCa LINE L1 -4354 2072 1998 218 328 52 35 chr4 17164045 17164161 -167124501 - MIR3 SINE MIR -85 123 6 205 386 26 0 chr4 17167491 17167605 -167121057 + L2 LINE L2 2698 2814 -500 273 329 123 65 chr4 17167670 17168086 -167120576 - L2 LINE L2 -47 3266 2827 536 249 120 75 chr4 17168127 17168620 -167120042 + L1ME3 LINE L1 5410 5924 -238 790 239 23 103 chr4 17168633 17168984 -167119678 - L1MD2 LINE L1 -19 6340 6018 393 59 0 0 chr4 17168996 17169047 -167119615 - L1PA13 LINE L1 -21 6142 6092 2082 214 76 78 chr4 17169055 17169132 -167119530 - L1MD2 LINE L1 -371 5988 5912 2044 131 0 0 chr4 17169132 17169414 -167119248 + AluSx SINE Alu 1 282 -30 2082 214 76 78 chr4 17169414 17169447 -167119215 - L1MD2 LINE L1 -447 5912 5880 180 0 0 0 chr4 17169447 17169467 -167119195 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2082 214 76 78 chr4 17169467 17170332 -167118330 - L1MD2 LINE L1 -479 5880 5016 1132 220 4 0 chr4 17170419 17170646 -167118016 - L1MB5 LINE L1 -59 6115 5888 955 122 30 25 chr4 17170758 17170955 -167117707 - L1MA4 LINE L1 0 6300 6103 1754 256 43 24 chr4 17170963 17171251 -167117411 - L1MD2 LINE L1 -1128 5018 4737 1640 47 51 68 chr4 17171251 17171486 -167117176 + AluY SINE Alu 70 300 -11 1754 256 43 24 chr4 17171486 17171909 -167116753 - L1MD2 LINE L1 -1409 4737 4293 299 234 21 0 chr4 17172001 17172095 -167116567 + L1M4 LINE L1 4729 4824 -1322 432 288 171 44 chr4 17172175 17172419 -167116243 + L1M4 LINE L1 4876 5088 -1058 2277 112 0 0 chr4 17172419 17172722 -167115940 + AluSx SINE Alu 2 304 -8 432 288 171 44 chr4 17172722 17172887 -167115775 + L1M4 LINE L1 5088 5337 -809 228 240 10 50 chr4 17173097 17173197 -167115465 + A-rich Low_complexity Low_complexity 4 99 0 540 361 119 5 chr4 17173282 17173709 -167114953 - HAL1 LINE L1 -927 1580 1105 4123 85 27 2 chr4 17174916 17175504 -167113158 - L1PA13 LINE L1 -12 6151 5549 1365 220 74 15 chr4 17175919 17176255 -167112407 + MLT1A1 LTR MaLR 2 357 -8 288 328 57 25 chr4 17176263 17176385 -167112277 - MIR SINE MIR -86 176 51 255 374 88 12 chr4 17176614 17176785 -167111877 - MIR SINE MIR -78 184 1 477 282 48 71 chr4 17176905 17177242 -167111420 + L3 LINE CR1 606 934 -643 303 326 11 0 chr4 17178425 17178514 -167110148 - L2 LINE L2 -49 3223 3134 275 368 64 0 chr4 17179974 17180099 -167108563 - L2 LINE L2 -2 3270 3138 397 298 0 9 chr4 17180212 17180326 -167108336 - L2 LINE L2 -12 3301 3189 189 0 0 0 chr4 17180917 17180938 -167107724 + (T)n Simple_repeat Simple_repeat 1 21 0 2487 177 5 108 chr4 17181264 17181836 -167106826 + MLT2B1 LTR ERVL 8 520 0 181 350 164 23 chr4 17182298 17182475 -167106187 + L2 LINE L2 3040 3241 -31 196 300 229 0 chr4 17182985 17183055 -167105607 + MIR SINE MIR 61 146 -116 2358 81 3 0 chr4 17183141 17183464 -167105198 - L1PA13 LINE L1 -4 6159 5836 411 292 102 35 chr4 17183613 17183839 -167104823 - MIR SINE MIR -14 248 8 204 205 0 0 chr4 17184755 17184794 -167103868 + (CA)n Simple_repeat Simple_repeat 1 39 0 228 282 42 14 chr4 17185099 17185170 -167103492 - L2 LINE L2 0 3313 3241 185 302 0 0 chr4 17185467 17185510 -167103152 + L2 LINE L2 3200 3242 -30 2252 105 0 6 chr4 17185855 17186170 -167102492 - AluSq SINE Alu 0 313 1 441 304 84 36 chr4 17186982 17187232 -167101430 + MIR SINE MIR 1 262 0 588 279 93 49 chr4 17187300 17187563 -167101099 + MLT1G1 LTR MaLR 52 292 -250 1678 184 19 77 chr4 17187563 17187977 -167100685 - MLT1B LTR MaLR 0 390 1 588 279 93 49 chr4 17187977 17188001 -167100661 + MLT1G1 LTR MaLR 292 313 -229 361 149 9 114 chr4 17188096 17188210 -167100452 - MLT2B1 LTR ERVL 0 520 419 409 218 11 0 chr4 17188247 17188334 -167100328 + MLT1G1 LTR MaLR 500 587 -8 2501 136 0 36 chr4 17189661 17190080 -167098582 - L1P LINE L1 -2318 3828 3425 1053 64 36 0 chr4 17190080 17190219 -167098443 + L1PA11 LINE L1 6028 6172 -2 194 326 67 0 chr4 17191149 17191238 -167097424 + L2 LINE L2 3153 3247 -25 361 241 19 123 chr4 17191240 17191311 -167097351 - MLT1L LTR MaLR -4 611 534 2167 124 12 3 chr4 17191311 17191649 -167097013 + L1PA13 LINE L1 5814 6154 -9 361 241 19 123 chr4 17191649 17191789 -167096873 - MLT1L LTR MaLR -81 534 422 534 118 0 0 chr4 17192103 17192205 -167096457 + (TCTA)n Simple_repeat Simple_repeat 1 102 0 208 322 115 0 chr4 17192292 17192379 -167096283 + L2 LINE L2 2608 2704 -610 290 119 0 0 chr4 17192599 17192641 -167096021 - Alu SINE Alu -257 42 1 305 175 53 105 chr4 17193714 17193828 -167094834 + L1 LINE L1 3618 3725 -2421 821 252 128 0 chr4 17193954 17194180 -167094482 - MIR SINE MIR 0 262 8 320 278 232 21 chr4 17194229 17194695 -167093967 - MLT1G1 LTR MaLR 0 555 47 928 123 7 7 chr4 17194761 17194907 -167093755 + Tigger5 DNA MER2_type 2178 2323 0 286 242 11 22 chr4 17195048 17195139 -167093523 - L1MC4a LINE L1 -1841 5967 5878 271 280 12 23 chr4 17195164 17195238 -167093424 + GA-rich Low_complexity Low_complexity 1 74 -381 2353 141 6 3 chr4 17195238 17195601 -167093061 - THE1B LTR MaLR 0 364 1 271 280 12 23 chr4 17195601 17195625 -167093037 + GA-rich Low_complexity Low_complexity 74 455 0 240 257 62 9 chr4 17195680 17195793 -167092869 + L1ME4a LINE L1 5997 6115 -6 208 241 133 12 chr4 17197680 17197763 -167090899 + MIR3 SINE MIR 3 95 -113 290 318 55 69 chr4 17198342 17198631 -167090031 + L2 LINE L2 2824 3108 -205 230 359 28 14 chr4 17198732 17198874 -167089788 + MLT1K LTR MaLR 100 243 -345 192 135 0 0 chr4 17199018 17199055 -167089607 + (TG)n Simple_repeat Simple_repeat 2 38 0 361 304 67 15 chr4 17199211 17199346 -167089316 + L2 LINE L2 3172 3313 0 2430 84 0 0 chr4 17199548 17199846 -167088816 + AluY SINE Alu 1 298 -13 216 345 97 28 chr4 17199991 17200136 -167088526 - MIR3 SINE MIR 0 208 54 600 164 0 0 chr4 17200191 17200301 -167088361 + CT-rich Low_complexity Low_complexity 3 112 0 21 0 0 0 chr4 17201160 17201181 -167087481 + AT_rich Low_complexity Low_complexity 1 21 0 306 310 124 0 chr4 17201861 17201990 -167086672 + MIR SINE MIR 75 219 -43 21 0 0 0 chr4 17202449 17202470 -167086192 + AT_rich Low_complexity Low_complexity 1 21 0 1515 225 36 61 chr4 17202640 17203196 -167085466 + L1MD2 LINE L1 5449 5990 -369 670 224 102 38 chr4 17203222 17203486 -167085176 + L1MD2 LINE L1 6078 6358 -1 333 68 0 0 chr4 17203926 17203970 -167084692 + (CA)n Simple_repeat Simple_repeat 2 45 0 356 248 111 8 chr4 17204230 17204347 -167084315 - L2 LINE L2 0 3313 3185 996 226 62 103 chr4 17205675 17205977 -167082685 + LTR16B LTR ERVL 7 285 -179 1666 26 0 0 chr4 17205977 17206172 -167082490 - L1PA2 LINE L1 -2 6153 5959 996 226 62 103 chr4 17206172 17206337 -167082325 + LTR16B LTR ERVL 285 455 -9 2276 96 0 10 chr4 17206478 17206779 -167081883 + AluSg SINE Alu 1 298 -12 455 306 115 11 chr4 17207137 17207320 -167081342 + MIR SINE MIR 18 219 -43 183 322 41 8 chr4 17207399 17207520 -167081142 - L2 LINE L2 -78 3235 3111 198 302 28 38 chr4 17207541 17207647 -167081015 - L2 LINE L2 -280 2992 2888 378 275 165 46 chr4 17207948 17208070 -167080592 + MIR SINE MIR 19 125 -137 2168 114 7 0 chr4 17208070 17208369 -167080293 + AluSq SINE Alu 1 301 -12 378 275 165 46 chr4 17208369 17208464 -167080198 + MIR SINE MIR 125 262 0 350 301 8 32 chr4 17210120 17210243 -167078419 - MIR SINE MIR -16 246 127 331 349 72 5 chr4 17210915 17211110 -167077552 - MIR SINE MIR -24 238 31 5686 66 4 0 chr4 17211252 17212024 -167076638 - L1PA7 LINE L1 -8 6146 5372 6765 65 4 72 chr4 17212034 17213065 -167075597 - L1PA7 LINE L1 -3 6151 5147 779 94 0 0 chr4 17213080 17213186 -167075476 + L1P3 LINE L1 15 120 -6341 227 227 93 67 chr4 17213304 17213379 -167075283 - MIR SINE MIR -184 78 2 390 313 118 30 chr4 17213388 17213720 -167074942 - L2 LINE L2 -1340 1974 1614 24 53 0 0 chr4 17214320 17214358 -167074304 + AT_rich Low_complexity Low_complexity 1 38 0 1897 230 82 22 chr4 17214362 17215087 -167073575 + L1ME2 LINE L1 5237 6011 -153 694 197 71 0 chr4 17215100 17215227 -167073435 - FRAM SINE Alu -20 156 21 180 97 0 0 chr4 17215275 17215306 -167073356 + (TG)n Simple_repeat Simple_repeat 2 32 0 291 268 24 12 chr4 17215465 17215547 -167073115 - L2 LINE L2 -5 3267 3185 225 204 56 0 chr4 17215802 17215856 -167072806 - MLT1A2 LTR MaLR 0 390 334 246 62 0 0 chr4 17215856 17215888 -167072774 + (CA)n Simple_repeat Simple_repeat 2 33 0 3182 105 4 21 chr4 17215902 17216379 -167072283 - L1PA8A LINE L1 -1 6130 5662 1220 113 0 0 chr4 17216399 17216585 -167072077 - L1PA8A LINE L1 -1817 4329 4144 * 23973 149 21 13 chr4 17216583 17221767 -167066895 - L1PA8A LINE L1 -455 5991 731 658 214 21 7 chr4 17221786 17221931 -167066731 - MLT1A2 LTR MaLR -227 147 1 21 0 0 0 chr4 17222012 17222033 -167066629 + AT_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr4 17222115 17222157 -167066505 + AT_rich Low_complexity Low_complexity 1 42 0 1206 199 70 35 chr4 17222609 17222950 -167065712 - MLT1A2 LTR MaLR -20 354 2 210 297 154 0 chr4 17223161 17223308 -167065354 - MIR SINE MIR -43 219 49 369 293 32 70 chr4 17223655 17223812 -167064850 - MIR3 SINE MIR -39 169 19 255 246 73 55 chr4 17224257 17224367 -167064295 - L3 LINE CR1 -110 1467 1356 230 211 29 136 chr4 17224464 17224580 -167064082 - MIR SINE MIR -65 143 40 1923 132 0 74 chr4 17224629 17224954 -167063708 - AluSc SINE Alu -8 301 1 447 304 166 16 chr4 17224961 17225208 -167063454 + MLT1J2 LTR MaLR 36 319 -131 364 320 0 47 chr4 17225659 17225831 -167062831 + LTR16A LTR ERVL 175 338 -112 23 54 0 0 chr4 17225859 17225896 -167062766 + AT_rich Low_complexity Low_complexity 1 37 0 1217 261 7 74 chr4 17226167 17226715 -167061947 + MLT2B1 LTR ERVL 3 512 -42 2452 272 37 12 chr4 17226778 17227639 -167061023 + ERVL-B1 LTR ERVL 28 960 -4761 210 404 19 10 chr4 17227978 17228082 -167060580 + L2 LINE L2 3116 3220 -52 289 338 133 23 chr4 17228365 17228756 -167059906 + L2 LINE L2 2520 2953 -361 231 274 0 0 chr4 17228908 17228970 -167059692 + L2 LINE L2 3206 3267 -5 195 42 0 0 chr4 17230110 17230134 -167058528 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 2068 115 0 4 chr4 17230140 17230418 -167058244 - AluSq SINE Alu -36 277 1 541 206 65 0 chr4 17230788 17230895 -167057767 + MIR SINE MIR 116 229 -33 412 348 103 13 chr4 17231177 17231410 -167057252 + L2 LINE L2 2553 2806 -508 609 141 50 0 chr4 17231681 17231802 -167056860 - Ricksha DNA DNA -7 3247 3121 4759 135 27 32 chr4 17231804 17232649 -167056013 - Ricksha DNA DNA -1104 2142 1302 2039 114 29 109 chr4 17232652 17233100 -167055562 - Ricksha DNA DNA -2593 653 242 362 244 0 0 chr4 17233114 17233192 -167055470 - Ricksha DNA DNA -1078 103 26 198 0 0 0 chr4 17233557 17233579 -167055083 + (ATTTG)n Simple_repeat Simple_repeat 2 23 0 5867 95 11 2 chr4 17233579 17235168 -167053494 - L1PA10 LINE L1 -19 6149 4536 181 262 81 58 chr4 17235260 17235432 -167053230 + L2 LINE L2 3113 3288 -25 315 262 10 7 chr4 17236093 17236184 -167052478 + MIR SINE MIR 52 144 -64 431 275 145 18 chr4 17236195 17236471 -167052191 + MER46C DNA MER2_type 1 311 -27 191 154 13 51 chr4 17237762 17237840 -167050822 + A-rich Low_complexity Low_complexity 4 78 0 230 329 24 12 chr4 17237881 17237963 -167050699 + L2 LINE L2 1845 1927 -1387 1484 271 138 6 chr4 17238029 17238545 -167050117 + MLT1E LTR MaLR 10 593 0 345 244 61 26 chr4 17238546 17238661 -167050001 + MIR SINE MIR 86 204 -58 342 125 86 16 chr4 17238661 17238789 -167049873 + (TA)n Simple_repeat Simple_repeat 1 137 0 198 250 241 9 chr4 17239219 17239327 -167049335 - MIR SINE MIR -28 234 102 667 276 70 5 chr4 17239329 17239543 -167049119 + MIR SINE MIR 2 229 -33 236 164 55 0 chr4 17239604 17239659 -167049003 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 21 0 0 0 chr4 17242975 17242996 -167045666 + AT_rich Low_complexity Low_complexity 1 21 0 283 234 31 47 chr4 17243230 17243358 -167045304 - L1M4 LINE L1 -1209 4937 4812 634 302 85 43 chr4 17243441 17244882 -167043780 - L1MEc LINE L1 -4784 1612 111 331 322 164 6 chr4 17245707 17245878 -167042784 + MIR SINE MIR 49 246 -16 228 269 0 0 chr4 17247100 17247152 -167041510 + L2 LINE L2 3210 3261 -52 618 211 59 7 chr4 17247425 17247577 -167041085 + FRAM SINE Alu 1 40 0 7726 157 14 41 chr4 17247615 17248938 -167039724 - HSMAR1 DNA Mariner 0 1287 1 213 205 0 0 chr4 17249251 17249290 -167039372 - L2 LINE L2 -4 3309 3271 306 260 146 10 chr4 17249345 17249441 -167039221 - L2 LINE L2 -12 3301 3193 2410 30 40 10 chr4 17249470 17249766 -167038896 + AluY SINE Alu 1 305 -6 835 199 6 19 chr4 17250138 17250294 -167038368 - FRAM SINE Alu -23 153 1 198 283 0 0 chr4 17251138 17251184 -167037478 + L2 LINE L2 3267 3312 -1 264 324 39 10 chr4 17251599 17251701 -167036961 + MIR SINE MIR 106 210 -52 24 77 0 0 chr4 17251918 17251970 -167036692 + AT_rich Low_complexity Low_complexity 1 52 0 622 197 49 0 chr4 17253195 17253317 -167035345 + FLAM_C SINE Alu 3 130 -3 4617 232 12 24 chr4 17253319 17254707 -167033955 + L1PA15 LINE L1 1223 2610 -4187 11480 204 38 40 chr4 17255312 17259526 -167029136 + L1PA15 LINE L1 2608 6813 -3 426 294 135 12 chr4 17259925 17260095 -167028567 + L2 LINE L2 2871 3061 -252 5937 150 96 8 chr4 17260102 17261193 -167027469 + Tigger1 DNA MER2_type 2 1188 -1230 228 241 19 0 chr4 17261763 17261817 -167026845 - MIR SINE MIR -25 237 183 334 230 153 90 chr4 17261858 17262080 -167026582 + MER106A DNA MER1_type 1 236 0 309 272 22 22 chr4 17262381 17262473 -167026189 - MIR SINE MIR -71 191 100 1358 284 121 15 chr4 17262774 17263396 -167025266 - L1ME3A LINE L1 -210 5960 5282 292 342 40 40 chr4 17263461 17263739 -167024923 - L1MC/D LINE L1 -2002 5806 5529 323 272 129 65 chr4 17264761 17265040 -167023622 + L2 LINE L2 1613 1909 -1405 414 317 58 64 chr4 17265147 17265857 -167022805 + L2 LINE L2 2538 3289 -24 273 283 157 60 chr4 17266055 17266355 -167022307 + MLT1H LTR MaLR 23 351 -198 553 281 41 81 chr4 17266699 17267061 -167021601 - L1ME3A LINE L1 -2941 3205 2865 661 233 184 45 chr4 17267190 17267430 -167021232 + MER74B LTR ERVL 124 406 -216 1714 211 30 19 chr4 17267430 17267791 -167020871 - MLT1A1 LTR MaLR 0 365 1 661 233 184 45 chr4 17267791 17267816 -167020846 + MER74B LTR ERVL 406 426 -196 2321 121 50 0 chr4 17268175 17268538 -167020124 + L1PA11 LINE L1 5792 6172 -2 26 98 0 0 chr4 17268649 17268731 -167019931 + AT_rich Low_complexity Low_complexity 1 82 0 21 36 0 0 chr4 17269091 17269119 -167019543 + AT_rich Low_complexity Low_complexity 1 28 0 579 176 7 18 chr4 17269329 17269602 -167019060 + (TA)n Simple_repeat Simple_repeat 1 270 0 1627 223 0 6 chr4 17269686 17270000 -167018662 - AluJo SINE Alu 0 312 1 10997 197 19 8 chr4 17270484 17274002 -167014660 - L1PB1 LINE L1 0 6867 3319 2103 89 3 92 chr4 17274002 17274338 -167014324 - AluSg SINE Alu -2 308 3 33615 42 32 2 chr4 17274341 17274358 -167014304 - L1P LINE L1 -1784 4362 4347 9020 34 0 0 chr4 17274358 17276222 -167012440 - L1PA2 LINE L1 0 6155 4293 33615 42 32 2 chr4 17276222 17280435 -167008227 - L1P LINE L1 -1799 4347 3 12296 124 95 27 chr4 17280436 17282963 -167005699 - L1PB1 LINE L1 -3535 3327 625 1032 154 16 0 chr4 17282955 17283137 -167005525 - L1PB1 LINE L1 -6663 200 16 * 30 97 0 0 chr4 17283285 17283378 -167005284 + AT_rich Low_complexity Low_complexity 1 93 0 223 359 0 0 chr4 17283564 17283628 -167005034 + L2 LINE L2 3206 3269 -3 840 283 36 83 chr4 17284238 17284959 -167003703 + L2 LINE L2 2611 3313 0 297 296 113 35 chr4 17284975 17285117 -167003545 - MIR SINE MIR -12 250 98 932 181 0 0 chr4 17285156 17285300 -167003362 + FRAM SINE Alu 1 141 -35 29 28 0 0 chr4 17285305 17285341 -167003321 + AT_rich Low_complexity Low_complexity 1 36 0 1364 225 100 42 chr4 17285862 17286320 -167002342 - MLT1D LTR MaLR 0 505 21 379 317 68 44 chr4 17286536 17286645 -167002017 - MIR SINE MIR -39 223 105 21143 32 1 8 chr4 17286645 17290023 -166998639 + L1PA4 LINE L1 2798 6155 0 379 317 68 44 chr4 17290023 17290118 -166998544 - MIR SINE MIR -157 105 14 403 266 43 137 chr4 17291093 17291326 -166997336 - MIR SINE MIR -13 249 39 1279 233 129 35 chr4 17291658 17292061 -166996601 + MSTB2 LTR MaLR 15 455 -2 180 77 0 0 chr4 17292959 17292985 -166995677 + (CA)n Simple_repeat Simple_repeat 1 26 0 23 0 0 0 chr4 17293791 17293814 -166994848 + AT_rich Low_complexity Low_complexity 1 23 0 750 288 145 78 chr4 17294333 17294351 -166994311 - MLT1E LTR MaLR 0 593 578 3353 194 80 0 chr4 17294351 17295030 -166993632 + MER44D DNA MER2_type 1 605 0 750 288 145 78 chr4 17295030 17295549 -166993113 - MLT1E LTR MaLR -15 578 20 1939 139 0 29 chr4 17296975 17297284 -166991378 + AluY SINE Alu 1 300 -11 206 293 52 0 chr4 17297793 17297851 -166990811 + MIR SINE MIR 47 107 -155 214 293 0 0 chr4 17297975 17298033 -166990629 + GA-rich Low_complexity Low_complexity 3 60 0 21 0 0 0 chr4 17298527 17298548 -166990114 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 17299414 17299435 -166989227 + AT_rich Low_complexity Low_complexity 1 21 0 456 133 11 22 chr4 17300336 17300426 -166988236 + L1PA13 LINE L1 4447 4535 -1611 5963 96 28 6 chr4 17300437 17301593 -166987069 + L1PA13 LINE L1 4990 6162 -1 1094 221 59 59 chr4 17302359 17302749 -166985913 + MLT1B LTR MaLR 1 390 0 2287 91 3 0 chr4 17302788 17303084 -166985578 - AluY SINE Alu -14 297 1 238 147 118 0 chr4 17303161 17303229 -166985433 - L1ME4a LINE L1 -1 6120 6045 2460 138 36 7 chr4 17304533 17304945 -166983717 + MSTB LTR MaLR 1 424 -2 2016 108 87 0 chr4 17305301 17305578 -166983084 + AluSg SINE Alu 1 301 -9 363 368 77 26 chr4 17305600 17305872 -166982790 + HAL1b LINE L1 397 682 -666 320 358 41 8 chr4 17306335 17306458 -166982204 - L2 LINE L2 0 3272 3146 254 303 34 0 chr4 17306624 17306743 -166981919 + L1ME4a LINE L1 5968 6090 -31 307 354 93 9 chr4 17307076 17307291 -166981371 - L1ME LINE L1 -318 5803 5571 452 347 65 0 chr4 17307315 17307514 -166981148 + MIR SINE MIR 41 252 -10 1194 107 0 11 chr4 17307568 17307745 -166980917 - L1PA2 LINE L1 0 6155 5981 21 0 0 0 chr4 17308488 17308509 -166980153 + AT_rich Low_complexity Low_complexity 1 21 0 366 256 73 107 chr4 17308984 17309218 -166979444 - MIR SINE MIR -24 238 13 199 274 214 24 chr4 17309413 17309497 -166979165 + MIR SINE MIR 29 128 -134 2141 124 0 25 chr4 17309515 17309830 -166978832 + AluSx SINE Alu 1 307 -5 186 301 133 12 chr4 17309864 17309947 -166978715 + MIR SINE MIR 159 251 -11 1621 150 95 4 chr4 17311739 17312012 -166976650 - AluJb SINE Alu -14 298 1 318 292 46 39 chr4 17312645 17312775 -166975887 + MIR SINE MIR 97 227 -35 325 202 0 36 chr4 17312778 17312862 -166975800 - MLT1J2 LTR MaLR -328 122 42 324 0 0 0 chr4 17313450 17313486 -166975176 + (CA)n Simple_repeat Simple_repeat 2 37 0 220 339 42 30 chr4 17313818 17313983 -166974679 - MIR SINE MIR -28 234 68 428 296 20 1 chr4 17314285 17314423 -166974239 + MIR SINE MIR 25 162 -50 400 314 9 0 chr4 17314764 17314869 -166973793 + MER81 DNA DNA 9 114 0 574 280 37 50 chr4 17316184 17316533 -166972129 - MLT1H1 LTR MaLR -214 376 32 306 370 39 8 chr4 17316601 17316728 -166971934 - HAL1 LINE L1 -1644 863 733 1698 128 49 85 chr4 17317286 17317675 -166970987 - THE1C LTR MaLR 0 375 1 2089 143 0 0 chr4 17318298 17318599 -166970063 - AluSx SINE Alu -11 301 1 314 307 71 61 chr4 17319140 17319240 -166969422 - HAL1b LINE L1 -915 433 335 1889 168 84 25 chr4 17319240 17319644 -166969018 - MSTA LTR MaLR 0 428 1 314 307 71 61 chr4 17319644 17319755 -166968907 - HAL1b LINE L1 -1013 335 220 205 188 47 31 chr4 17319867 17319931 -166968731 + T-rich Low_complexity Low_complexity 2 66 0 322 344 97 36 chr4 17320974 17321530 -166967132 + L2 LINE L2 1891 2480 -834 182 314 92 60 chr4 17321620 17321805 -166966857 + L2 LINE L2 2613 2803 -511 327 263 0 0 chr4 17322568 17322644 -166966018 - MIR SINE MIR -108 154 79 243 0 0 0 chr4 17323084 17323111 -166965551 + (A)n Simple_repeat Simple_repeat 1 27 0 436 273 93 29 chr4 17323709 17323881 -166964781 - MIR SINE MIR -62 200 18 1779 136 0 78 chr4 17324667 17324998 -166963664 - AluY SINE Alu -6 305 1 222 37 0 0 chr4 17325510 17325537 -166963125 + (TTA)n Simple_repeat Simple_repeat 1 27 0 1640 223 0 3 chr4 17325552 17325839 -166962823 - AluJo SINE Alu -26 286 1 690 315 62 10 chr4 17326219 17326527 -166962135 - MLT1H LTR MaLR 0 549 226 690 192 35 17 chr4 17326524 17326696 -166961966 - MLT1H LTR MaLR -361 188 14 982 296 80 33 chr4 17326951 17327404 -166961258 - L2 LINE L2 -8 3305 2832 707 253 11 11 chr4 17327432 17327610 -166961052 + MER58A DNA MER1_type 47 224 0 569 284 127 22 chr4 17327613 17327881 -166960781 - L2 LINE L2 -507 2807 2512 3697 76 2 0 chr4 17328179 17328664 -166959998 - L1PA8 LINE L1 -10 6162 5677 380 298 121 42 chr4 17328740 17328955 -166959707 + MIR SINE MIR 20 251 -11 357 350 25 12 chr4 17330166 17330329 -166958333 - L1ME LINE L1 -348 5773 5609 319 322 160 21 chr4 17331148 17331480 -166957182 + L2 LINE L2 2595 2972 -342 238 264 0 0 chr4 17331984 17332037 -166956625 + (TG)n Simple_repeat Simple_repeat 2 54 0 396 205 12 12 chr4 17332342 17332425 -166956237 - MIR3 SINE MIR -54 154 72 256 380 83 32 chr4 17332908 17333221 -166955441 - L2 LINE L2 -10 3262 2934 201 350 0 12 chr4 17333998 17334078 -166954584 - MIR SINE MIR -75 187 109 40875 45 10 2 chr4 17334526 17340634 -166948028 + L1PA4 LINE L1 7 6155 0 936 236 123 36 chr4 17340692 17341026 -166947636 - MLT1A1 LTR MaLR -2 363 1 2410 98 0 0 chr4 17342142 17342447 -166946215 + AluSc SINE Alu 1 305 -4 259 294 0 87 chr4 17342960 17343052 -166945610 - L2 LINE L2 -2 3311 3228 221 248 46 17 chr4 17343063 17343142 -166945520 + MIR SINE MIR 20 109 -99 353 180 0 0 chr4 17343142 17343203 -166945459 + AluSc SINE Alu 228 288 -11 830 279 68 4 chr4 17344056 17344293 -166944369 - MIR SINE MIR -7 255 4 188 336 110 34 chr4 17344634 17344780 -166943882 + L2 LINE L2 3083 3239 -33 225 274 0 57 chr4 17344813 17344919 -166943743 + MIR SINE MIR 117 216 -46 356 331 23 12 chr4 17345288 17345446 -166943216 - MIR SINE MIR -12 196 32 508 275 135 35 chr4 17346629 17347170 -166941492 + L1ME4a LINE L1 5516 6110 -11 21 36 0 0 chr4 17347170 17347198 -166941464 + AT_rich Low_complexity Low_complexity 1 28 0 2298 69 0 3 chr4 17347913 17348217 -166940445 - L1PA8 LINE L1 -7 6165 5863 2208 129 7 0 chr4 17348393 17348702 -166939960 - AluSx SINE Alu -1 311 1 2149 91 10 3 chr4 17348887 17349184 -166939478 - AluSq SINE Alu -14 299 1 372 43 0 0 chr4 17349409 17349455 -166939207 + (TG)n Simple_repeat Simple_repeat 1 46 0 324 330 25 0 chr4 17349586 17349704 -166938958 - L2 LINE L2 0 3313 3193 25 0 0 0 chr4 17350004 17350029 -166938633 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr4 17350666 17350688 -166937974 + AT_rich Low_complexity Low_complexity 1 22 0 2139 133 0 9 chr4 17351510 17351825 -166936837 - AluSx SINE Alu 0 312 1 2060 165 31 11 chr4 17351963 17352345 -166936317 + MLT1B LTR MaLR 1 390 0 363 244 13 0 chr4 17352396 17352474 -166936188 - MIR SINE MIR -20 242 164 307 203 29 0 chr4 17352476 17352545 -166936117 + MIR SINE MIR 180 250 -12 341 43 21 0 chr4 17353876 17353923 -166934739 + (TG)n Simple_repeat Simple_repeat 1 48 0 3518 67 13 0 chr4 17354457 17354918 -166933744 - L1PA13 LINE L1 0 6163 5697 274 167 33 17 chr4 17355191 17355251 -166933411 - MIR SINE MIR -105 157 97 252 374 61 6 chr4 17355440 17355603 -166933059 - MIR SINE MIR -78 184 13 200 342 68 26 chr4 17355676 17355793 -166932869 + L2 LINE L2 3183 3304 -9 244 338 181 6 chr4 17356412 17356572 -166932090 + L2 LINE L2 3076 3263 -9 1052 232 88 47 chr4 17356636 17356976 -166931686 - MLT2B1 LTR ERVL -76 444 91 1927 131 38 0 chr4 17356979 17357322 -166931340 + MER4D LTR ERV1 1 356 -516 1785 132 124 47 chr4 17357328 17357714 -166930948 + MSTA LTR MaLR 13 428 0 * 3177 128 6 34 chr4 17357714 17358250 -166930412 + MER4D LTR ERV1 352 872 0 422 198 0 0 chr4 17358250 17358341 -166930321 - MLT2B1 LTR ERVL -463 91 1 237 275 67 67 chr4 17358832 17359010 -166929652 - MIR SINE MIR -50 212 35 260 284 95 52 chr4 17359185 17359301 -166929361 + MIR3 SINE MIR 37 157 -51 390 21 0 0 chr4 17359308 17359355 -166929307 + (TG)n Simple_repeat Simple_repeat 1 47 0 232 342 112 0 chr4 17359473 17359634 -166929028 + MIR SINE MIR 83 261 -1 288 312 26 19 chr4 17360833 17360982 -166927680 + MIR3 SINE MIR 8 155 -68 487 372 41 4 chr4 17361171 17361413 -166927249 + MIR SINE MIR 12 262 0 25 0 0 0 chr4 17361536 17361561 -166927101 + AT_rich Low_complexity Low_complexity 1 25 0 7270 29 3 0 chr4 17362689 17363551 -166925111 + L1PA4 LINE L1 5290 6154 -1 220 409 70 9 chr4 17367029 17367144 -166921518 + L2 LINE L2 2764 2885 -429 787 277 75 46 chr4 17367873 17368220 -166920442 + L2 LINE L2 2941 3297 -16 217 322 0 0 chr4 17368245 17368304 -166920358 - L2 LINE L2 -75 3197 3139 576 301 41 18 chr4 17368522 17368741 -166919921 + MIR SINE MIR 35 258 -4 849 308 80 28 chr4 17368765 17369424 -166919238 - L2 LINE L2 -20 3293 2579 588 304 40 24 chr4 17370061 17370308 -166918354 - MIR SINE MIR -3 259 9 225 286 57 0 chr4 17371312 17371382 -166917280 - L2 LINE L2 -3 3269 3196 1200 111 0 0 chr4 17371446 17371626 -166917036 + (TA)n Simple_repeat Simple_repeat 1 180 0 229 152 0 0 chr4 17371645 17371691 -166916971 - LTR66 LTR ERVL -171 439 394 444 208 0 0 chr4 17371693 17371789 -166916873 + (TA)n Simple_repeat Simple_repeat 2 97 0 436 252 50 0 chr4 17371790 17371909 -166916753 + MER63A DNA MER1_type 53 177 -33 1808 178 56 16 chr4 17374799 17375175 -166913487 + MSTD LTR MaLR 6 396 0 1034 248 58 60 chr4 17375484 17375884 -166912778 - MLT1D LTR MaLR -106 399 1 217 320 11 34 chr4 17376288 17376466 -166912196 + CT-rich Low_complexity Low_complexity 5 178 0 313 271 24 12 chr4 17376509 17376594 -166912068 + L2 LINE L2 3186 3271 -1 225 352 56 28 chr4 17377492 17377634 -166911028 - MIR SINE MIR -111 151 6 250 335 84 47 chr4 17378402 17378593 -166910069 + MLT1K LTR MaLR 282 479 -109 1742 162 6 61 chr4 17379054 17379413 -166909249 - MER44D DNA MER2_type 0 609 1 366 226 0 89 chr4 17379748 17379872 -166908790 + MLT1I LTR MaLR 295 407 -2 1861 161 0 7 chr4 17380021 17380313 -166908349 - AluSx SINE Alu -22 290 1 423 332 66 26 chr4 17380362 17380588 -166908074 + MIR SINE MIR 8 242 -20 579 133 25 50 chr4 17381857 17381871 -166906791 + MLT1H LTR MaLR 433 446 -103 1414 203 35 46 chr4 17381871 17382240 -166906422 - MLT1A1 LTR MaLR 0 365 1 579 133 25 50 chr4 17382240 17382345 -166906317 + MLT1H LTR MaLR 446 549 0 403 322 9 0 chr4 17382420 17382535 -166906127 - L2 LINE L2 -1 3312 3197 34 42 0 0 chr4 17382620 17382668 -166905994 + AT_rich Low_complexity Low_complexity 1 48 0 2805 88 28 2 chr4 17382933 17383329 -166905333 + MLT2A2 LTR ERVL 1 406 -47 250 274 12 24 chr4 17383331 17383415 -166905247 + (TATATG)n Simple_repeat Simple_repeat 4 86 0 231 36 0 0 chr4 17383418 17383446 -166905216 + (CA)n Simple_repeat Simple_repeat 2 29 0 311 109 0 0 chr4 17383453 17383499 -166905163 + MLT2A2 LTR ERVL 400 445 -8 278 98 20 0 chr4 17383506 17383557 -166905105 + (TA)n Simple_repeat Simple_repeat 2 53 0 23 33 0 0 chr4 17383819 17383849 -166904813 + AT_rich Low_complexity Low_complexity 1 30 0 983 213 36 23 chr4 17384635 17384856 -166903806 + MER58A DNA MER1_type 1 224 0 347 232 16 80 chr4 17385120 17385245 -166903417 + MLT1H1 LTR MaLR 64 180 -375 374 257 34 136 chr4 17385425 17385580 -166903082 - L2 LINE L2 -107 3165 3034 1636 174 24 17 chr4 17385580 17385867 -166902795 - AluJo SINE Alu -18 294 6 374 257 34 136 chr4 17385867 17385917 -166902745 - L2 LINE L2 -238 3034 2981 200 210 48 0 chr4 17386155 17386217 -166902445 + (TA)n Simple_repeat Simple_repeat 1 65 0 251 330 68 0 chr4 17386282 17386370 -166902292 - L3 LINE CR1 -277 1300 1207 273 329 0 0 chr4 17386438 17386520 -166902142 - L2 LINE L2 -24 3289 3208 199 376 12 0 chr4 17386543 17386628 -166902034 - L3 LINE CR1 -438 1139 1054 413 286 58 23 chr4 17387065 17387236 -166901426 + L3 LINE CR1 1187 1363 -214 603 185 62 23 chr4 17388054 17388221 -166900441 - L1MA9 LINE L1 -7 6284 6125 1597 147 135 18 chr4 17388221 17388555 -166900107 - THE1C LTR MaLR -1 374 2 603 185 62 23 chr4 17388555 17388665 -166899997 - L1MA9 LINE L1 -166 6125 5908 * 1910 224 37 6 chr4 17388643 17389130 -166899532 + L1MA9 LINE L1 5433 5934 -378 341 393 41 7 chr4 17389345 17389635 -166899027 + L2 LINE L2 3014 3313 0 1032 214 54 80 chr4 17390530 17390956 -166897706 + MER96B DNA MER1_type 2 416 -1 476 282 35 7 chr4 17391438 17391580 -166897082 - MIR SINE MIR -31 231 86 3794 152 41 46 chr4 17392298 17393080 -166895582 + LTR1 LTR ERV1 8 785 0 1883 261 45 37 chr4 17393626 17394247 -166894415 + MLT1E2 LTR MaLR 1 626 0 422 378 15 10 chr4 17394373 17394574 -166894088 - MIR SINE MIR -44 218 17 219 313 104 0 chr4 17394714 17394848 -166893814 + L2 LINE L2 2809 2956 -316 303 213 25 0 chr4 17395607 17395687 -166892975 - MER103 DNA DNA -30 136 55 636 241 52 68 chr4 17396180 17396371 -166892291 - MER5A DNA MER1_type -1 188 1 2251 109 0 16 chr4 17396724 17397036 -166891626 - AluSc SINE Alu -2 307 1 232 294 65 0 chr4 17397327 17397419 -166891243 - MLT1J LTR MaLR -319 192 95 198 91 0 0 chr4 17397450 17397483 -166891179 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 395 320 34 34 chr4 17397545 17397867 -166890795 + Charlie7 DNA MER1_type 309 630 -1982 2449 63 0 25 chr4 17398112 17398431 -166890231 + AluY SINE Alu 1 311 0 291 196 112 49 chr4 17398483 17398626 -166890036 + Charlie7 DNA MER1_type 2415 2566 -46 498 251 37 31 chr4 17399457 17399620 -166889042 - MIR SINE MIR -53 209 46 4379 118 49 26 chr4 17401367 17402703 -166885959 - pTR5 LTR ERV1 0 2438 743 530 287 109 4 chr4 17402782 17403012 -166885650 - MER46C DNA MER2_type -4 334 81 959 182 82 106 chr4 17403338 17403717 -166884945 - MLT1A2 LTR MaLR -4 370 1 1118 263 59 18 chr4 17403956 17404430 -166884232 - MLT1G LTR MaLR -3 552 34 24 32 0 0 chr4 17404779 17404810 -166883852 + AT_rich Low_complexity Low_complexity 1 31 0 185 286 18 36 chr4 17404994 17405050 -166883612 - MIR SINE MIR -11 251 197 229 329 13 0 chr4 17405191 17405267 -166883395 + MIR SINE MIR 174 250 -12 636 247 38 71 chr4 17405312 17405412 -166883250 - MIR SINE MIR -12 250 148 2186 176 51 10 chr4 17405412 17405821 -166882841 + MSTB LTR MaLR 1 426 0 636 247 38 71 chr4 17405821 17405959 -166882703 - MIR SINE MIR -114 148 20 1597 195 7 82 chr4 17406080 17406521 -166882141 - MLT2D LTR ERVL -6 408 1 1979 158 0 0 chr4 17407558 17407855 -166880807 + AluSq SINE Alu 1 297 -16 192 125 0 0 chr4 17408363 17408395 -166880267 + (A)n Simple_repeat Simple_repeat 1 32 0 22 0 0 0 chr4 17409049 17409071 -166879591 + AT_rich Low_complexity Low_complexity 1 22 0 1188 259 37 43 chr4 17409333 17409384 -166879278 + MLT1A2 LTR MaLR 1 51 -323 3526 138 47 0 chr4 17409384 17409957 -166878705 + MER4A LTR ERV1 1 600 0 1188 259 37 43 chr4 17409957 17410280 -166878382 + MLT1A2 LTR MaLR 51 373 -1 348 263 48 11 chr4 17412045 17412148 -166876514 + MIR SINE MIR 49 155 -63 25 0 0 0 chr4 17412687 17412712 -166875950 + AT_rich Low_complexity Low_complexity 1 25 0 246 228 0 0 chr4 17415013 17415070 -166873592 + MIR SINE MIR 94 150 -112 243 278 107 47 chr4 17415159 17415328 -166873334 - L2 LINE L2 -40 3273 3095 1407 149 93 17 chr4 17415520 17415822 -166872840 - THE1C LTR MaLR 0 375 51 200 361 93 0 chr4 17416017 17416125 -166872537 + L2 LINE L2 3195 3312 -1 243 288 258 8 chr4 17416597 17416729 -166871933 - MIR SINE MIR -26 236 72 341 145 13 0 chr4 17416881 17416957 -166871705 + CT-rich Low_complexity Low_complexity 2 78 0 22 56 0 0 chr4 17418155 17418191 -166870471 + AT_rich Low_complexity Low_complexity 1 36 0 180 212 0 35 chr4 17418248 17418333 -166870329 + (TATATG)n Simple_repeat Simple_repeat 5 86 0 998 260 32 4 chr4 17419038 17419284 -166869378 + MIR SINE MIR 5 257 -5 3015 74 23 9 chr4 17419753 17420183 -166868479 + MLT2A1 LTR ERVL 1 436 -8 184 401 86 20 chr4 17422007 17422204 -166866458 + L2 LINE L2 2838 3047 -225 401 264 26 90 chr4 17422235 17422390 -166866272 + MER5B DNA MER1_type 26 170 -8 830 235 24 0 chr4 17422481 17422651 -166866011 - MER58A DNA MER1_type -50 174 1 207 200 182 0 chr4 17422887 17422942 -166865720 + MIR3 SINE MIR 134 198 -10 205 152 0 0 chr4 17423421 17423454 -166865208 + CT-rich Low_complexity Low_complexity 1 33 0 327 146 0 0 chr4 17423455 17423510 -166865152 + (CA)n Simple_repeat Simple_repeat 1 55 0 350 299 109 38 chr4 17423536 17423720 -166864942 + MIR SINE MIR 66 262 0 311 329 74 13 chr4 17423731 17423880 -166864782 - MIR SINE MIR -76 186 29 279 293 24 12 chr4 17424055 17424137 -166864525 + MIR3 SINE MIR 115 197 -11 791 245 5 11 chr4 17425157 17425341 -166863321 + MIR SINE MIR 53 235 -27 4783 167 27 15 chr4 17425854 17426058 -166862604 - L1PA16 LINE L1 -5 6161 5961 1758 197 0 3 chr4 17426058 17426353 -166862309 - AluJo SINE Alu -18 294 1 4783 167 27 15 chr4 17426353 17427220 -166861442 - L1PA16 LINE L1 -205 5961 5083 598 320 98 51 chr4 17427686 17428330 -166860332 - L1M4 LINE L1 -1080 5066 4376 2914 13 0 0 chr4 17428330 17428648 -166860014 - AluYb8 SINE Alu 0 318 1 598 320 98 51 chr4 17428648 17428800 -166859862 - L1M4 LINE L1 -1770 4376 4233 25 0 0 0 chr4 17428865 17428890 -166859772 + AT_rich Low_complexity Low_complexity 1 25 0 5246 148 23 25 chr4 17429171 17430741 -166857921 + L1PB1 LINE L1 4587 6143 -8 22 70 0 0 chr4 17430856 17430899 -166857763 + AT_rich Low_complexity Low_complexity 1 43 0 329 335 71 17 chr4 17430934 17431173 -166857489 - L1M4 LINE L1 -2348 3798 3547 1520 248 33 35 chr4 17433075 17433615 -166855047 - L1ME2 LINE L1 -9 6155 5617 2121 112 3 25 chr4 17433625 17433939 -166854723 - AluSx SINE Alu -4 308 2 476 110 70 70 chr4 17433940 17434040 -166854622 - AluSg SINE Alu -173 137 38 185 327 0 0 chr4 17434210 17434262 -166854400 + MIR SINE MIR 86 137 -125 1474 215 24 40 chr4 17434704 17435080 -166853582 - MLT1A2 LTR MaLR -1 373 4 1343 125 5 0 chr4 17436052 17436260 -166852402 + L1PA13 LINE L1 5937 6145 -18 217 295 184 22 chr4 17436271 17436549 -166852113 - L2 LINE L2 -568 2746 2424 372 97 0 0 chr4 17437382 17437444 -166851218 + (TG)n Simple_repeat Simple_repeat 2 63 0 509 30 15 0 chr4 17437455 17437522 -166851140 + (TAGA)n Simple_repeat Simple_repeat 1 68 0 675 272 114 48 chr4 17437892 17438373 -166850289 + LTR33A LTR ERVL 11 523 0 201 108 0 0 chr4 17438678 17438715 -166849947 + (TA)n Simple_repeat Simple_repeat 2 38 0 637 289 248 15 chr4 17438808 17439203 -166849459 - L2 LINE L2 0 3313 2827 340 273 61 0 chr4 17439302 17439434 -166849228 - L1ME LINE L1 -409 5712 5573 1515 234 40 6 chr4 17439518 17439942 -166848720 + MLT1D LTR MaLR 1 480 -25 6257 94 22 0 chr4 17439974 17440906 -166847756 - L1PB1 LINE L1 0 6151 5215 316 228 26 61 chr4 17440925 17441039 -166847623 + MIR SINE MIR 67 176 -86 25 0 0 0 chr4 17441152 17441177 -166847485 + AT_rich Low_complexity Low_complexity 1 25 0 300 111 0 0 chr4 17441269 17441314 -166847348 + (TA)n Simple_repeat Simple_repeat 2 46 0 183 80 0 0 chr4 17441562 17441587 -166847075 + (A)n Simple_repeat Simple_repeat 1 25 0 181 361 16 0 chr4 17442564 17442625 -166846037 - L3 LINE CR1 -102 1475 1414 1927 240 48 112 chr4 17443501 17444036 -166844626 + L1MEc LINE L1 65 482 -5914 378 0 0 0 chr4 17444036 17444078 -166844584 + (TAA)n Simple_repeat Simple_repeat 1 42 0 1927 240 48 112 chr4 17444078 17444748 -166843914 + L1MEc LINE L1 482 1193 -5203 315 200 263 0 chr4 17444769 17444849 -166843813 - MER58A DNA MER1_type -5 102 2 233 337 81 35 chr4 17445594 17445766 -166842896 - L3 LINE CR1 -1 1576 1397 235 322 34 34 chr4 17445946 17446047 -166842615 + MIR SINE MIR 56 156 -106 657 258 50 11 chr4 17446047 17446229 -166842433 - MER5A DNA MER1_type 0 189 1 1771 264 53 49 chr4 17446693 17447452 -166841210 - LTR41 LTR ERVL -10 763 2 205 275 0 0 chr4 17447507 17447547 -166841115 - MIR SINE MIR -23 239 200 1059 297 63 14 chr4 17448375 17448742 -166839920 - LTR16A LTR ERVL -12 438 54 448 349 37 4 chr4 17449184 17449425 -166839237 - ERVL LTR ERVL -740 5024 4776 945 300 60 70 chr4 17449500 17450080 -166838582 + L2 LINE L2 2731 3312 -1 187 318 70 39 chr4 17450671 17450800 -166837862 - L2 LINE L2 -12 3301 3169 225 0 0 0 chr4 17450972 17450997 -166837665 + (T)n Simple_repeat Simple_repeat 1 25 0 332 311 37 30 chr4 17451112 17451247 -166837415 - MIR SINE MIR 0 262 127 701 311 34 8 chr4 17451250 17451517 -166837145 - LTR16B LTR ERVL -3 461 188 318 109 0 0 chr4 17451521 17451567 -166837095 - LTR16B LTR ERVL -418 46 1 229 275 198 0 chr4 17451567 17451658 -166837004 - MIR SINE MIR -131 131 23 707 100 0 0 chr4 17452275 17452375 -166836287 + AluSc SINE Alu 193 292 -17 330 315 101 0 chr4 17452471 17452620 -166836042 - MIR SINE MIR -77 185 22 283 232 0 49 chr4 17453797 17453879 -166834783 + MIR SINE MIR 77 154 -108 555 263 65 129 chr4 17453962 17454294 -166834368 + L2 LINE L2 2389 2741 -573 2158 120 0 0 chr4 17454294 17454593 -166834069 + AluSg SINE Alu 1 299 -11 555 263 65 129 chr4 17454593 17454736 -166833926 + L2 LINE L2 2741 2827 -487 2491 71 0 0 chr4 17454736 17455032 -166833630 + AluY SINE Alu 1 296 -15 555 263 65 129 chr4 17455032 17455096 -166833566 + L2 LINE L2 2827 2894 -420 189 0 0 0 chr4 17455146 17455167 -166833495 + (T)n Simple_repeat Simple_repeat 1 21 0 257 329 20 59 chr4 17455169 17455321 -166833341 + L2 LINE L2 2898 3043 -270 2643 196 33 113 chr4 17455322 17456799 -166831863 - L1MA8 LINE L1 -119 6172 4795 1251 281 96 16 chr4 17456810 17457247 -166831415 - L1M3d LINE L1 -5418 473 2 245 307 47 68 chr4 17457263 17457455 -166831207 + L2 LINE L2 3050 3237 -76 282 230 44 0 chr4 17457723 17457836 -166830826 + (TA)n Simple_repeat Simple_repeat 2 119 0 216 0 0 0 chr4 17457837 17457861 -166830801 + (CA)n Simple_repeat Simple_repeat 1 24 0 379 341 12 38 chr4 17457892 17458082 -166830580 - MIR3 SINE MIR -22 186 1 1943 124 43 35 chr4 17458974 17459346 -166829316 + THE1C LTR MaLR 1 375 0 243 203 0 0 chr4 17459567 17459626 -166829036 + (CA)n Simple_repeat Simple_repeat 2 60 0 1962 218 77 9 chr4 17459639 17460079 -166828583 - MLT2B1 LTR ERVL -50 470 1 332 264 26 39 chr4 17460717 17460872 -166827790 + A-rich Low_complexity Low_complexity 1 153 0 426 326 81 46 chr4 17461081 17461563 -166827099 - L1MC4a LINE L1 -1883 5925 5427 2385 100 0 0 chr4 17462009 17462319 -166826343 - AluSg SINE Alu 0 310 1 1708 146 9 54 chr4 17462710 17463025 -166825637 - AluSx SINE Alu -11 301 1 32 26 0 0 chr4 17463390 17463429 -166825233 + AT_rich Low_complexity Low_complexity 1 39 0 2186 127 3 3 chr4 17463483 17463791 -166824871 - AluSg SINE Alu -2 308 1 388 258 13 44 chr4 17463791 17463940 -166824722 + L2 LINE L2 1820 1965 -1349 1658 146 16 12 chr4 17464179 17464433 -166824229 - AluSx SINE Alu -15 297 43 191 381 95 0 chr4 17464441 17464546 -166824116 + L2 LINE L2 2207 2321 -993 245 332 106 70 chr4 17464610 17465008 -166823654 + L2 LINE L2 2805 3216 -56 241 398 11 0 chr4 17465803 17465896 -166822766 - MIR3 SINE MIR -112 96 3 462 314 34 0 chr4 17466747 17466922 -166821740 - MIR SINE MIR -14 248 68 23 33 0 0 chr4 17468340 17468370 -166820292 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr4 17469752 17469773 -166818889 + AT_rich Low_complexity Low_complexity 1 21 0 237 299 95 36 chr4 17469978 17470199 -166818463 - L1MC/D LINE L1 -2256 5552 5319 449 332 76 26 chr4 17470241 17470624 -166818038 - L1ME4a LINE L1 -9 6112 5711 211 373 10 47 chr4 17471090 17471283 -166817379 + L2 LINE L2 3111 3296 -17 2975 219 4 11 chr4 17471291 17472053 -166816609 - L1 LINE L1 -2444 3702 2946 5345 209 22 27 chr4 17472055 17473412 -166815250 + L1 LINE L1 3710 5059 -1087 540 78 13 0 chr4 17473419 17473496 -166815166 + L1PA16 LINE L1 6079 6156 -10 2414 126 22 0 chr4 17473687 17474043 -166814619 + THE1B LTR MaLR 1 364 0 252 247 224 0 chr4 17474862 17474947 -166813715 - MIR SINE MIR 0 262 159 380 262 31 109 chr4 17474955 17475184 -166813478 - MLT1I LTR MaLR -8 401 191 236 270 33 149 chr4 17475503 17475744 -166812918 + MIR SINE MIR 49 261 -1 1162 141 0 0 chr4 17475997 17476196 -166812466 - L1MA6 LINE L1 0 6300 6102 320 256 78 39 chr4 17476466 17476646 -166812016 + L1MC/D LINE L1 5582 5768 -2040 238 355 55 9 chr4 17476834 17476944 -166811718 + L2 LINE L2 2924 3038 -275 939 232 23 5 chr4 17476944 17477164 -166811498 + L1ME LINE L1 5508 5731 -431 851 267 157 12 chr4 17477294 17477695 -166810967 + L1MC4a LINE L1 5436 5894 -1914 526 292 62 11 chr4 17478664 17478842 -166809820 + MIR3 SINE MIR 16 202 -6 264 324 28 0 chr4 17478980 17479051 -166809611 + MIR3 SINE MIR 93 165 -43 443 221 39 0 chr4 17479146 17479250 -166809412 - Tigger5 DNA MER2_type 0 2323 2216 492 309 24 52 chr4 17479611 17479863 -166808799 - MIR SINE MIR -5 257 13 667 306 79 70 chr4 17480334 17480964 -166807698 + L2 LINE L2 1820 2455 -859 1745 160 99 0 chr4 17481038 17481351 -166807311 + MER7A DNA MER2_type 1 342 -4 289 310 79 50 chr4 17483323 17483626 -166805036 + L1MCb LINE L1 413 724 -5698 271 271 0 14 chr4 17483880 17483950 -166804712 + L1MCb LINE L1 818 886 -5537 325 128 35 58 chr4 17483983 17484069 -166804593 + L1MA4 LINE L1 6216 6299 -1 401 252 0 18 chr4 17484238 17484349 -166804313 + L1MCb LINE L1 1170 1278 -5145 1524 167 28 31 chr4 17484350 17484637 -166804025 + AluJo SINE Alu 1 286 -26 33 0 0 0 chr4 17484648 17484681 -166803981 + AT_rich Low_complexity Low_complexity 1 33 0 1715 276 58 37 chr4 17484684 17485567 -166803095 + L1MCb LINE L1 1281 2181 -4760 1261 264 53 28 chr4 17485587 17486022 -166802640 + L1MCb LINE L1 4 449 -5596 230 293 8 65 chr4 17488046 17488169 -166800493 + MIR SINE MIR 70 185 -77 276 320 7 52 chr4 17489547 17489700 -166798962 + MIR SINE MIR 35 180 -82 253 253 25 51 chr4 17490526 17490605 -166798057 + MIR SINE MIR 90 166 -96 258 284 0 0 chr4 17490658 17490732 -166797930 + (TA)n Simple_repeat Simple_repeat 2 75 0 364 238 49 98 chr4 17490777 17490920 -166797742 - MIR SINE MIR -19 243 108 680 268 39 36 chr4 17491052 17491360 -166797302 - MER74B LTR ERVL -34 588 179 200 385 0 0 chr4 17492039 17492104 -166796558 - MIR3 SINE MIR -15 193 129 195 282 146 19 chr4 17492442 17492545 -166796117 + MIR SINE MIR 137 252 -10 193 194 0 0 chr4 17493859 17493895 -166794767 - MIR SINE MIR -10 252 217 186 409 63 7 chr4 17494045 17494187 -166794475 - L2 LINE L2 -2 3311 3162 * 754 282 77 55 chr4 17494170 17494549 -166794113 - L2 LINE L2 -2 3311 2925 434 327 60 20 chr4 17495522 17495773 -166792889 - MIR SINE MIR 0 262 2 1484 204 23 29 chr4 17495940 17496283 -166792379 - MLT1A1 LTR MaLR 0 365 25 1916 120 13 43 chr4 17496656 17496957 -166791705 + AluSq SINE Alu 1 292 -21 5035 117 52 7 chr4 17497046 17497810 -166790852 + HSMAR1 DNA Mariner 1 799 -488 730 137 17 0 chr4 17497817 17497934 -166790728 + AluSp/q SINE Alu 174 292 -21 366 169 14 0 chr4 17498033 17498104 -166790558 + HSMAR1 DNA Mariner 1 72 -1215 705 167 9 0 chr4 17498109 17498223 -166790439 - HSMAR1 DNA Mariner -611 676 562 * 3568 114 6 0 chr4 17498222 17498705 -166789957 + HSMAR1 DNA Mariner 802 1287 0 564 344 118 55 chr4 17499197 17499846 -166788816 - L2 LINE L2 -430 2884 2278 2338 87 3 10 chr4 17499846 17500155 -166788507 + AluY SINE Alu 1 307 -4 564 344 118 55 chr4 17500155 17501038 -166787624 - L2 LINE L2 -1036 2278 1255 181 309 52 62 chr4 17501678 17501775 -166786887 + L3b LINE CR1 1478 1573 -10 348 270 101 46 chr4 17501863 17502019 -166786643 + MIR SINE MIR 5 173 -80 935 219 5 5 chr4 17502019 17502224 -166786438 - MER3 DNA MER1_type 0 209 5 348 270 101 46 chr4 17502224 17502245 -166786417 + MIR SINE MIR 173 191 -62 21 0 0 0 chr4 17502252 17502273 -166786389 + AT_rich Low_complexity Low_complexity 1 21 0 306 343 55 0 chr4 17502338 17502484 -166786178 - MIR SINE MIR -28 234 81 201 151 19 38 chr4 17503136 17503189 -166785473 + A-rich Low_complexity Low_complexity 1 52 0 281 229 11 126 chr4 17503234 17503409 -166785253 - MLT1J2 LTR MaLR 0 450 296 453 274 109 23 chr4 17503437 17503612 -166785050 - MLT1J2 LTR MaLR -255 195 6 293 121 0 106 chr4 17504564 17504630 -166784032 + MLT1K LTR MaLR 530 588 0 266 344 123 22 chr4 17504874 17505191 -166783471 - L2 LINE L2 -416 2898 2550 1141 233 31 97 chr4 17506208 17506763 -166781899 - L1ME2 LINE L1 0 6164 5656 1982 98 0 24 chr4 17507167 17507496 -166781166 + AluSq SINE Alu 33 354 0 1072 233 42 10 chr4 17508619 17508932 -166779730 - MER33 DNA MER1_type -1 323 1 233 250 62 12 chr4 17509466 17509546 -166779116 + L2 LINE L2 3187 3270 -2 182 384 141 0 chr4 17509765 17509864 -166778798 - MIR SINE MIR -114 148 36 330 293 17 35 chr4 17510789 17510905 -166777757 + L2 LINE L2 3200 3313 0 726 319 85 50 chr4 17510930 17511857 -166776805 + L2 LINE L2 1890 2849 -465 294 294 28 46 chr4 17511937 17512046 -166776616 + L2 LINE L2 2983 3089 -183 356 252 16 31 chr4 17512083 17512210 -166776452 + MLT1I LTR MaLR 277 401 -8 573 288 64 69 chr4 17513102 17513568 -166775094 + LTR67 LTR ERVL 92 555 -2 21 0 0 0 chr4 17513604 17513625 -166775037 + AT_rich Low_complexity Low_complexity 1 21 0 1177 194 14 0 chr4 17513746 17513962 -166774700 + MER20 DNA MER1_type 1 219 0 276 351 42 54 chr4 17514097 17514410 -166774252 - L2 LINE L2 -1 3312 3004 2412 152 31 31 chr4 17514635 17515056 -166773606 - MSTB LTR MaLR -5 421 1 212 315 9 56 chr4 17515234 17515438 -166773224 - MIR3 SINE MIR -6 202 8 247 323 77 23 chr4 17516023 17516153 -166772509 + MIR SINE MIR 18 154 -108 307 287 189 37 chr4 17516165 17516329 -166772333 - MIR SINE MIR -8 254 66 319 274 17 34 chr4 17516892 17517009 -166771653 + GA-rich Low_complexity Low_complexity 2 116 0 267 253 13 13 chr4 17517191 17517270 -166771392 + (TA)n Simple_repeat Simple_repeat 2 80 0 309 287 43 9 chr4 17517281 17517396 -166771266 - MIR SINE MIR -73 189 71 200 200 0 0 chr4 17517450 17517490 -166771172 + (TTCA)n Simple_repeat Simple_repeat 4 43 0 1676 237 99 13 chr4 17517572 17518048 -166770614 + LTR40a LTR ERVL 3 519 0 462 345 103 5 chr4 17518366 17518589 -166770073 + MIR SINE MIR 16 260 -2 623 308 49 0 chr4 17519611 17519858 -166768804 + MIR SINE MIR 2 260 -2 21 0 0 0 chr4 17520955 17520976 -166767686 + AT_rich Low_complexity Low_complexity 1 21 0 1741 246 71 70 chr4 17521176 17521794 -166766868 - MLT1E2 LTR MaLR 0 626 6 282 246 172 8 chr4 17521958 17521974 -166766688 + L1ME2 LINE L1 5998 6010 -154 336 24 0 0 chr4 17521974 17522015 -166766647 + (CA)n Simple_repeat Simple_repeat 1 41 0 282 246 172 8 chr4 17522015 17522132 -166766530 + L1ME2 LINE L1 6010 6153 -11 2318 103 17 28 chr4 17522615 17522973 -166765689 - THE1A LTR MaLR 0 355 2 25 51 0 0 chr4 17523707 17523746 -166764916 + AT_rich Low_complexity Low_complexity 1 39 0 321 303 74 25 chr4 17524816 17524938 -166763724 + MIR SINE MIR 92 219 -43 341 345 21 14 chr4 17525030 17525175 -166763487 - LTR16C LTR ERVL -165 326 181 468 311 0 0 chr4 17525441 17525560 -166763102 - L2 LINE L2 -2 3311 3193 1877 225 86 90 chr4 17525716 17525785 -166762877 - L1MC5 LINE L1 -370 7591 7523 795 107 0 0 chr4 17525785 17525897 -166762765 - L1PA10 LINE L1 -11 6157 6046 1877 225 86 90 chr4 17525897 17526919 -166761743 - L1MC5 LINE L1 -438 7523 6503 32 91 0 0 chr4 17527140 17527228 -166761434 + AT_rich Low_complexity Low_complexity 1 88 0 708 242 77 0 chr4 17527401 17527595 -166761067 - L1MC5 LINE L1 -1877 5931 5723 362 285 106 34 chr4 17528305 17528691 -166759971 - L1MC5 LINE L1 -1712 4434 4021 3780 188 20 22 chr4 17529173 17529907 -166758755 + MER44D DNA MER2_type 1 605 0 183 129 0 0 chr4 17529917 17529948 -166758714 + (TG)n Simple_repeat Simple_repeat 2 32 0 21 36 0 0 chr4 17530335 17530363 -166758299 + AT_rich Low_complexity Low_complexity 1 28 0 418 357 29 25 chr4 17530835 17531115 -166757547 - L1ME4a LINE L1 -218 5903 5623 40 37 0 0 chr4 17532220 17532274 -166756388 + AT_rich Low_complexity Low_complexity 1 54 0 2457 123 17 6 chr4 17532876 17533234 -166755428 - THE1B LTR MaLR -2 362 1 317 317 99 6 chr4 17533391 17533552 -166755110 - MIR SINE MIR -51 211 36 242 329 122 18 chr4 17533699 17533863 -166754799 + MIR SINE MIR 66 246 -16 499 314 37 21 chr4 17534256 17534444 -166754218 - MIR SINE MIR -8 254 64 1664 169 71 23 chr4 17534830 17535184 -166753478 + THE1C LTR MaLR 5 375 0 1356 107 53 31 chr4 17535217 17535315 -166753347 - MER30 DNA MER1_type 0 230 136 2346 110 0 0 chr4 17535315 17535624 -166753038 + AluSx SINE Alu 1 309 -3 1356 107 53 31 chr4 17535624 17535750 -166752912 - MER30 DNA MER1_type -94 136 1 237 273 0 18 chr4 17535751 17535806 -166752856 - MLT1J1 LTR MaLR -110 336 283 1882 187 47 6 chr4 17536071 17536430 -166752232 - MLT1B LTR MaLR 0 390 17 822 210 17 23 chr4 17536445 17536621 -166752041 - MLT1J2 LTR MaLR -194 256 82 1565 202 34 36 chr4 17536982 17537369 -166751293 + MLT1B LTR MaLR 1 386 -4 1714 206 82 5 chr4 17537625 17537993 -166750669 + MSTD LTR MaLR 1 396 0 851 175 0 0 chr4 17538613 17538756 -166749906 - MLT1C LTR MaLR 0 467 325 229 169 42 56 chr4 17539668 17539739 -166748923 - MER74A LTR ERVL 0 558 489 2308 80 0 7 chr4 17539761 17540060 -166748602 - AluSp SINE Alu -16 297 1 2234 185 30 38 chr4 17540060 17540567 -166748095 - MER74A LTR ERVL -55 503 1 324 336 25 0 chr4 17540630 17540752 -166747910 - MIR SINE MIR -57 205 81 207 0 0 0 chr4 17541026 17541049 -166747613 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 2057 89 49 26 chr4 17541627 17541931 -166746731 - AluY SINE Alu 0 311 1 421 337 61 41 chr4 17542045 17542291 -166746371 + MIR SINE MIR 11 261 -1 265 188 24 0 chr4 17542298 17542383 -166746279 + (TA)n Simple_repeat Simple_repeat 1 87 0 213 300 43 0 chr4 17542535 17542605 -166746057 - MIR3 SINE MIR -16 192 120 219 69 0 0 chr4 17543443 17543472 -166745190 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 290 340 0 21 chr4 17544053 17544147 -166744515 + MIR SINE MIR 21 112 -150 363 229 50 64 chr4 17544516 17544656 -166744006 + MIR SINE MIR 124 261 -1 616 329 18 22 chr4 17544694 17544916 -166743746 + LTR16A LTR ERVL 86 306 -144 1814 170 3 0 chr4 17546354 17546648 -166742014 + AluJb SINE Alu 1 295 -17 301 238 0 0 chr4 17546683 17546746 -166741916 + L1MC4 LINE L1 6641 6703 -1339 246 261 0 43 chr4 17547291 17547360 -166741302 + GA-rich Low_complexity Low_complexity 2 67 0 267 294 261 6 chr4 17547745 17547925 -166740737 + MIR SINE MIR 21 246 -16 1147 257 86 72 chr4 17548198 17548238 -166740424 - MLT2B1 LTR ERVL 0 520 482 411 38 0 0 chr4 17548238 17548291 -166740371 + (TG)n Simple_repeat Simple_repeat 2 54 0 1147 257 86 72 chr4 17548291 17548763 -166739899 - MLT2B1 LTR ERVL -38 482 1 346 290 154 6 chr4 17549011 17549180 -166739482 - MIR SINE MIR -14 248 55 277 262 0 95 chr4 17549220 17549304 -166739358 + L2 LINE L2 3233 3308 -5 291 316 59 64 chr4 17549691 17549818 -166738844 + MIR SINE MIR 46 173 -89 2256 96 3 17 chr4 17549818 17550119 -166738543 - AluSc SINE Alu -12 297 1 291 316 59 64 chr4 17550119 17550178 -166738484 + MIR SINE MIR 173 231 -31 214 356 115 0 chr4 17551023 17551110 -166737552 + MIR SINE MIR 30 126 -82 849 222 9 47 chr4 17553821 17554033 -166734629 - MER63A DNA MER1_type 0 210 7 804 217 37 28 chr4 17554910 17555127 -166733535 + MER20 DNA MER1_type 1 219 0 493 335 57 10 chr4 17555589 17555798 -166732864 + MIR SINE MIR 33 251 -11 3439 67 0 7 chr4 17555981 17556432 -166732230 + LTR7 LTR ERV1 1 448 -2 1053 117 0 0 chr4 17556434 17556588 -166732074 + HERVH LTR ERV1 1 154 -7559 * 15802 105 69 11 chr4 17556586 17559244 -166729418 + HERVH LTR ERV1 477 3290 -4423 8279 95 2 3 chr4 17559234 17560959 -166727703 + HERVH LTR ERV1 3492 5149 -2564 * 1303 108 38 0 chr4 17560960 17561172 -166727490 + HERVH LTR ERV1 5600 5819 -1894 2262 94 34 16 chr4 17561172 17561555 -166727107 + HERVH LTR ERV1 7324 7713 0 3377 67 2 9 chr4 17561555 17562006 -166726656 + LTR7 LTR ERV1 1 448 -2 258 259 168 30 chr4 17562224 17562355 -166726307 - MIR SINE MIR -79 183 35 262 315 9 28 chr4 17564694 17564802 -166723860 + (TATATG)n Simple_repeat Simple_repeat 4 109 0 239 184 20 0 chr4 17564802 17564851 -166723811 - MLT2F LTR ERVL -57 606 557 355 270 76 49 chr4 17564921 17565106 -166723556 - MLT1E3 LTR MaLR -383 241 52 230 219 44 131 chr4 17565110 17565270 -166723392 - MLT2F LTR ERVL -517 146 1 364 344 23 0 chr4 17565333 17565464 -166723198 + L2 LINE L2 3134 3267 -5 310 336 46 0 chr4 17565717 17565848 -166722814 - L2 LINE L2 -4 3268 3132 2316 121 49 0 chr4 17565901 17566248 -166722414 + THE1B LTR MaLR 1 364 0 928 185 0 0 chr4 17566923 17567094 -166721568 - AluSg/x SINE Alu 0 300 130 687 292 5 10 chr4 17567094 17567303 -166721359 - MER20 DNA MER1_type -11 208 1 376 343 39 6 chr4 17567426 17567604 -166721058 - MIR SINE MIR -78 184 1 186 103 0 0 chr4 17567953 17567982 -166720680 + (T)n Simple_repeat Simple_repeat 1 29 0 1597 159 69 45 chr4 17568009 17568343 -166720319 - MER61A LTR ERV1 0 343 2 529 138 28 110 chr4 17568345 17568490 -166720172 - MLT1A2 LTR MaLR -241 133 1 209 375 0 0 chr4 17568751 17568815 -166719847 + MIR SINE MIR 85 148 -60 1980 130 58 3 chr4 17568886 17569179 -166719483 + AluSx SINE Alu 1 309 -3 343 215 93 37 chr4 17569257 17569364 -166719298 + L2 LINE L2 2501 2613 -701 * 680 285 8 51 chr4 17569300 17569535 -166719127 + MIR SINE MIR 38 262 0 * 985 259 119 23 chr4 17569532 17570189 -166718473 + L2 LINE L2 2592 3313 0 321 140 0 0 chr4 17570647 17570704 -166717958 + (TG)n Simple_repeat Simple_repeat 2 58 0 2092 285 60 11 chr4 17570920 17571671 -166716991 + Zaphod DNA AcHobo 6 793 -3238 1911 167 28 0 chr4 17571709 17572069 -166716593 + L1PA16 LINE L1 5577 5946 -220 41427 45 2 1 chr4 17572640 17578785 -166709877 + L1PA3 LINE L1 4 6152 -3 225 252 29 68 chr4 17578959 17579062 -166709600 - MLT1J2 LTR MaLR -310 140 42 255 274 113 32 chr4 17579108 17579232 -166709430 - L2 LINE L2 -1183 2131 1998 314 306 108 69 chr4 17580344 17580576 -166708086 - L2 LINE L2 -5 3267 3027 2206 129 6 0 chr4 17580785 17581096 -166707566 + AluSp SINE Alu 1 313 0 208 336 174 20 chr4 17581405 17581554 -166707108 + MIR3 SINE MIR 10 181 -27 389 291 61 80 chr4 17582763 17582976 -166705686 - MIR SINE MIR -48 214 6 21 0 0 0 chr4 17583111 17583132 -166705530 + AT_rich Low_complexity Low_complexity 1 21 0 1608 182 7 20 chr4 17583372 17583668 -166704994 - AluJb SINE Alu -20 292 1 551 269 51 87 chr4 17583741 17584292 -166704370 - L1ME LINE L1 -345 5817 5291 312 293 57 53 chr4 17584589 17584872 -166703790 + L1M4 LINE L1 4733 5016 -1130 265 342 19 13 chr4 17585617 17585772 -166702890 - ERVL LTR ERVL -3881 1883 1728 623 329 28 12 chr4 17586311 17586566 -166702096 + ERVL LTR ERVL 4224 4482 -1282 1002 243 60 76 chr4 17586578 17586702 -166701960 - MLT1A2 LTR MaLR -13 361 236 2060 112 4 0 chr4 17586702 17587005 -166701657 - AluSc SINE Alu 0 309 6 1002 243 60 76 chr4 17587005 17587247 -166701415 - MLT1A2 LTR MaLR -138 236 1 355 335 72 19 chr4 17587649 17587858 -166700804 + ERVL LTR ERVL 4903 5122 -642 351 286 11 0 chr4 17588203 17588294 -166700368 + MER96 DNA MER1_type? 11 102 -73 326 336 39 0 chr4 17588389 17588493 -166700169 + L2 LINE L2 3158 3265 -7 345 264 21 62 chr4 17588756 17588900 -166699762 + MIR SINE MIR 66 203 -59 26 50 0 0 chr4 17588914 17588954 -166699708 + AT_rich Low_complexity Low_complexity 1 40 0 233 98 24 0 chr4 17589064 17589105 -166699557 + (TC)n Simple_repeat Simple_repeat 1 42 0 26 0 0 0 chr4 17589247 17589273 -166699389 + AT_rich Low_complexity Low_complexity 1 26 0 252 347 8 50 chr4 17590304 17590425 -166698237 + L2 LINE L2 2852 2967 -305 184 30 61 0 chr4 17590427 17590460 -166698202 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 333 282 61 70 chr4 17590663 17590876 -166697786 - L2 LINE L2 -10 3303 3093 225 139 0 0 chr4 17590951 17590994 -166697668 + (TG)n Simple_repeat Simple_repeat 2 44 0 35 0 0 0 chr4 17591638 17591673 -166696989 + AT_rich Low_complexity Low_complexity 1 35 0 365 0 22 0 chr4 17591708 17591753 -166696909 + (TG)n Simple_repeat Simple_repeat 1 46 0 189 0 0 0 chr4 17591893 17591914 -166696748 + (T)n Simple_repeat Simple_repeat 1 21 0 1676 184 0 27 chr4 17593286 17593416 -166695246 + AluJb SINE Alu 1 133 -179 369 0 0 0 chr4 17593416 17593457 -166695205 + (TA)n Simple_repeat Simple_repeat 1 41 0 1676 184 0 27 chr4 17593457 17593647 -166695015 + AluJb SINE Alu 133 312 0 5175 60 8 0 chr4 17594125 17594773 -166693889 + L1PA7 LINE L1 5502 6154 0 335 323 56 87 chr4 17594865 17595243 -166693419 - MLT1I LTR MaLR -15 394 29 199 43 22 87 chr4 17595464 17595510 -166693152 + (CTATT)n Simple_repeat Simple_repeat 2 44 0 396 317 24 16 chr4 17595753 17595876 -166692786 + MIR SINE MIR 17 140 -68 35 0 0 0 chr4 17597233 17597268 -166691394 + AT_rich Low_complexity Low_complexity 1 35 0 360 283 122 40 chr4 17597834 17598081 -166690581 - L1 LINE L1 -2681 3465 3199 26 64 0 0 chr4 17598404 17598451 -166690211 + AT_rich Low_complexity Low_complexity 1 47 0 238 299 204 6 chr4 17600051 17600208 -166688454 + MIR SINE MIR 65 252 -10 219 356 23 11 chr4 17600778 17600865 -166687797 - L2 LINE L2 -44 3269 3182 1335 231 50 76 chr4 17601688 17602186 -166686476 - MLT1D LTR MaLR 0 505 21 3650 189 12 31 chr4 17602300 17603117 -166685545 - L1PA15-16 LINE L1 -4188 2661 1860 282 256 35 0 chr4 17604287 17604373 -166684289 + (CATATA)n Simple_repeat Simple_repeat 6 94 0 306 67 0 0 chr4 17605635 17605680 -166682982 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 307 242 84 4 chr4 17606869 17606986 -166681676 - MIR SINE MIR -55 153 19 191 328 16 16 chr4 17606992 17607053 -166681609 + L3 LINE CR1 1509 1569 -8 405 0 0 0 chr4 17607211 17607256 -166681406 + (TG)n Simple_repeat Simple_repeat 2 46 0 241 223 132 32 chr4 17607426 17607569 -166681093 + MIR3 SINE MIR 11 165 -71 21 57 0 0 chr4 17608557 17608592 -166680070 + AT_rich Low_complexity Low_complexity 1 35 0 708 119 18 0 chr4 17610151 17610260 -166678402 - AluSp SINE Alu -202 111 1 272 390 19 0 chr4 17611453 17611612 -166677050 + MER20B DNA MER1_type 17 178 -605 3205 198 28 67 chr4 17612030 17612983 -166675679 + LTR5 LTR ERVK 54 969 0 1287 195 6 58 chr4 17613271 17613584 -166675078 - AluJb SINE Alu -15 297 1 477 163 12 0 chr4 17613615 17613701 -166674961 + AluS SINE Alu 1 87 -226 257 103 0 162 chr4 17613806 17613874 -166674788 + MADE1 DNA Mariner 24 80 0 647 284 5 56 chr4 17613905 17614120 -166674542 + MER82 DNA MER2_type 444 647 -6 285 182 0 0 chr4 17614133 17614188 -166674474 - L1MC4 LINE L1 -1339 6703 6649 234 0 0 0 chr4 17614188 17614214 -166674448 + (CA)n Simple_repeat Simple_repeat 1 26 0 1679 120 15 8 chr4 17614243 17614502 -166674160 - AluSx SINE Alu -14 298 38 1615 187 28 3 chr4 17615703 17615992 -166672670 - AluJb SINE Alu -16 296 1 2006 294 68 61 chr4 17615992 17617460 -166671202 - L1M1 LINE L1 -5359 2206 16 186 43 0 0 chr4 17617475 17617498 -166671164 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 358 322 180 30 chr4 17617613 17617908 -166670754 - L2 LINE L2 -2954 360 22 443 281 39 46 chr4 17619207 17619360 -166669302 - MIR SINE MIR -71 191 40 469 367 53 13 chr4 17619589 17619889 -166668773 - L2 LINE L2 -907 2407 2096 220 391 55 0 chr4 17620029 17620139 -166668523 - MIR SINE MIR -101 161 46 190 344 53 17 chr4 17620189 17620333 -166668329 - MIR SINE MIR -67 141 47 294 29 0 0 chr4 17620529 17620564 -166668098 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 2450 131 3 21 chr4 17621484 17621560 -166667102 + THE1C LTR MaLR 1 77 -298 4714 93 14 5 chr4 17621560 17622214 -166666448 - PABL_A LTR ERV1 0 660 1 2450 131 3 21 chr4 17622214 17622519 -166666143 + THE1C LTR MaLR 77 375 0 1848 150 100 9 chr4 17622523 17622991 -166665671 + THE1-int LTR MaLR 4 469 -1111 526 292 96 12 chr4 17623185 17623425 -166665237 - MIR SINE MIR -1 261 2 23 0 0 0 chr4 17624298 17624321 -166664341 + AT_rich Low_complexity Low_complexity 1 23 0 26 64 0 0 chr4 17624930 17624977 -166663685 + AT_rich Low_complexity Low_complexity 1 47 0 255 256 11 11 chr4 17625761 17625851 -166662811 + (TA)n Simple_repeat Simple_repeat 2 91 0 25 31 0 0 chr4 17626514 17626546 -166662116 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr4 17627014 17627037 -166661625 + AT_rich Low_complexity Low_complexity 1 23 0 1434 131 50 7 chr4 17629047 17629232 -166659430 - AluY SINE Alu 0 311 113 207 0 0 0 chr4 17629232 17629255 -166659407 + (TA)n Simple_repeat Simple_repeat 1 23 0 1434 131 50 7 chr4 17629255 17629373 -166659289 - AluY SINE Alu -198 113 1 339 353 86 63 chr4 17629738 17630120 -166658542 + L2 LINE L2 2216 2606 -708 211 236 11 11 chr4 17630185 17630274 -166658388 + GA-rich Low_complexity Low_complexity 2 90 0 242 210 0 0 chr4 17631124 17631186 -166657476 + A-rich Low_complexity Low_complexity 1 62 0 40 87 0 0 chr4 17631309 17631412 -166657250 + AT_rich Low_complexity Low_complexity 1 103 0 422 326 47 42 chr4 17631500 17631715 -166656947 + MIR SINE MIR 2 217 -45 1294 311 65 16 chr4 17631930 17632500 -166656162 + L3 LINE CR1 613 1210 -367 1031 314 39 3 chr4 17632507 17632844 -166655818 + L2 LINE L2 2015 2363 -951 24 0 0 0 chr4 17632914 17632938 -166655724 + AT_rich Low_complexity Low_complexity 1 24 0 189 371 34 34 chr4 17632969 17633058 -166655604 + L3 LINE CR1 1431 1519 -58 215 240 60 0 chr4 17633183 17633233 -166655429 - L2 LINE L2 -16 3297 3245 3783 240 26 18 chr4 17633481 17634643 -166654019 + L1PA16 LINE L1 3436 4614 -2951 513 256 22 0 chr4 17634829 17634966 -166653696 - MLT1D LTR MaLR -352 153 14 291 214 0 0 chr4 17635089 17635159 -166653503 + (CA)n Simple_repeat Simple_repeat 2 71 0 21 0 0 0 chr4 17635295 17635316 -166653346 + AT_rich Low_complexity Low_complexity 1 21 0 217 224 0 20 chr4 17635370 17635419 -166653243 + CT-rich Low_complexity Low_complexity 3 50 0 2249 30 4 4 chr4 17635569 17635835 -166652827 + AluYa5 SINE Alu 16 281 -30 248 0 31 0 chr4 17635900 17635932 -166652730 + (TA)n Simple_repeat Simple_repeat 2 34 0 250 297 34 80 chr4 17638079 17638254 -166650408 + MLT1L LTR MaLR 34 200 -415 1772 120 7 49 chr4 17638503 17638811 -166649851 + AluSq SINE Alu 12 306 -7 1743 277 60 34 chr4 17639081 17640098 -166648564 - L1M4 LINE L1 -3087 3059 2011 1934 41 8 0 chr4 17640098 17640343 -166648319 - L1PA3 LINE L1 0 6155 5909 1743 277 60 34 chr4 17640343 17640533 -166648129 - L1M4 LINE L1 -4135 2011 1828 3459 166 23 1 chr4 17640642 17641415 -166647247 - L1M1 LINE L1 -743 5403 4716 236 351 21 21 chr4 17641596 17641690 -166646972 - MIR3 SINE MIR -52 156 63 24 32 0 0 chr4 17641725 17641756 -166646906 + AT_rich Low_complexity Low_complexity 1 31 0 23 78 0 0 chr4 17641828 17641879 -166646783 + AT_rich Low_complexity Low_complexity 1 51 0 187 292 80 35 chr4 17642952 17643065 -166645597 - L3 LINE CR1 -164 1413 1296 28 71 0 0 chr4 17643307 17643363 -166645299 + AT_rich Low_complexity Low_complexity 1 56 0 4579 205 39 10 chr4 17643582 17645491 -166643171 + L1PA16 LINE L1 5590 7582 -3 25 0 0 0 chr4 17645591 17645616 -166643046 + AT_rich Low_complexity Low_complexity 1 25 0 345 243 43 3 chr4 17645923 17646032 -166642630 + MLT1J1 LTR MaLR 85 196 -254 2016 178 51 28 chr4 17646502 17647015 -166641647 - MLT2A2 LTR ERVL -14 540 1 776 107 0 8 chr4 17647410 17647532 -166641130 + (GGAA)n Simple_repeat Simple_repeat 2 122 0 7053 51 0 18 chr4 17649134 17650486 -166638176 - L1PA4 LINE L1 -1 6154 4815 249 384 45 11 chr4 17650634 17650811 -166637851 + MIR SINE MIR 79 261 -1 21 57 0 0 chr4 17651255 17651290 -166637372 + AT_rich Low_complexity Low_complexity 1 35 0 775 261 37 18 chr4 17651311 17651529 -166637133 + MIR SINE MIR 41 262 0 1251 237 31 20 chr4 17651813 17652180 -166636482 + MLT1D LTR MaLR 127 370 -4 395 302 108 55 chr4 17653255 17653652 -166635010 + MLT1J2 LTR MaLR 33 450 0 701 262 6 6 chr4 17653657 17653825 -166634837 - MIR SINE MIR -87 175 8 2037 139 7 0 chr4 17654287 17654588 -166634074 + AluSx SINE Alu 1 303 -9 187 274 210 40 chr4 17656521 17656645 -166632017 - MIR SINE MIR -13 249 105 24 32 0 0 chr4 17656891 17656922 -166631740 + AT_rich Low_complexity Low_complexity 1 31 0 379 227 29 87 chr4 17657150 17657322 -166631340 - MIR SINE MIR -25 237 76 2531 53 0 0 chr4 17657723 17658024 -166630638 + AluY SINE Alu 1 301 -10 194 170 0 21 chr4 17658029 17658076 -166630586 + GA-rich Low_complexity Low_complexity 1 46 0 180 111 0 0 chr4 17658413 17658440 -166630222 + (AGGGGG)n Simple_repeat Simple_repeat 5 31 0 423 0 0 0 chr4 17658656 17658703 -166629959 + (TG)n Simple_repeat Simple_repeat 2 48 0 335 295 192 13 chr4 17658918 17659074 -166629588 + MIR SINE MIR 60 243 -19 349 315 16 24 chr4 17659231 17659358 -166629304 - L2 LINE L2 -1 3271 3146 448 284 50 24 chr4 17659773 17660111 -166628551 + L1MC4a LINE L1 4887 5233 -913 413 245 21 0 chr4 17660186 17660329 -166628333 + L1MC4a LINE L1 5343 5488 -2320 * 3200 190 8 37 chr4 17660324 17661301 -166627361 + L1MC1 LINE L1 4905 5865 -468 183 275 92 92 chr4 17661336 17661445 -166627217 + MIR SINE MIR 31 139 -69 2444 161 41 2 chr4 17661451 17661918 -166626744 + L1MC1 LINE L1 5842 6326 -7 1929 262 73 33 chr4 17661936 17662918 -166625744 + L1MC4a LINE L1 5482 6503 -1305 284 188 25 12 chr4 17662917 17662997 -166625665 + L1MD3 LINE L1 7902 7982 -13 * 2364 60 0 0 chr4 17663179 17663500 -166625162 + AluY SINE Alu 2 322 0 325 374 24 0 chr4 17663613 17663736 -166624926 - MIR3 SINE MIR -26 182 57 337 325 69 15 chr4 17664696 17664899 -166623763 - MIR SINE MIR -16 246 33 213 175 0 0 chr4 17664950 17664990 -166623672 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 345 297 41 21 chr4 17665170 17665315 -166623347 + MIR SINE MIR 35 182 -80 467 270 143 25 chr4 17666405 17666601 -166622061 - MIR SINE MIR -13 249 31 219 36 0 0 chr4 17666738 17666766 -166621896 + (TCTCTG)n Simple_repeat Simple_repeat 1 28 0 308 322 80 62 chr4 17666892 17667129 -166621533 - L2 LINE L2 -123 3149 2918 2078 137 0 16 chr4 17667129 17667444 -166621218 - AluSq SINE Alu -3 310 1 308 322 80 62 chr4 17667444 17667816 -166620846 - L2 LINE L2 -354 2918 2508 287 299 10 41 chr4 17667879 17667976 -166620686 - MER91A DNA MER1_type 0 196 103 428 333 142 6 chr4 17668276 17668438 -166620224 + MER5A DNA MER1_type 4 187 -2 189 0 0 0 chr4 17669658 17669679 -166618983 + (CA)n Simple_repeat Simple_repeat 2 22 0 218 320 39 0 chr4 17669769 17669847 -166618815 + MIR SINE MIR 119 199 -63 517 267 70 113 chr4 17669878 17670275 -166618387 + L2 LINE L2 2934 3313 0 184 358 84 11 chr4 17670326 17670421 -166618241 - MER5B DNA MER1_type -27 151 50 236 291 51 63 chr4 17671096 17671254 -166617408 - MER5A DNA MER1_type -1 188 33 405 380 98 17 chr4 17672120 17672467 -166616195 - L2 LINE L2 -38 3234 2860 430 208 50 10 chr4 17672854 17672955 -166615707 - MER45 DNA AcHobo -61 117 13 830 260 28 28 chr4 17674093 17674343 -166614319 - MIR SINE MIR 0 262 13 21 57 0 0 chr4 17674421 17674456 -166614206 + AT_rich Low_complexity Low_complexity 1 35 0 247 196 0 22 chr4 17674744 17674790 -166613872 - L2 LINE L2 -4 3268 3224 303 287 167 0 chr4 17675371 17675479 -166613183 + L2 LINE L2 3188 3313 0 400 305 100 25 chr4 17675728 17675928 -166612734 - MIR SINE MIR -42 220 6 1025 211 86 27 chr4 17676080 17676482 -166612180 + MLT2B1 LTR ERVL 1 401 -13 2156 126 24 78 chr4 17679280 17679401 -166609261 - MER83 LTR ERV1 -12 436 310 1801 147 0 72 chr4 17679401 17679735 -166608927 + AluSx SINE Alu 1 310 -2 2156 126 24 78 chr4 17679735 17680074 -166608588 - MER83 LTR ERV1 -138 310 1 1658 180 64 0 chr4 17680110 17680500 -166608162 - MLT2B1 LTR ERVL -55 460 1 4948 31 2 3 chr4 17680936 17681523 -166607139 - L1PA5 LINE L1 -7 6147 5562 262 296 93 9 chr4 17681538 17681646 -166607016 - L2 LINE L2 0 3313 3197 1113 199 102 89 chr4 17684307 17684698 -166603964 - MSTD LTR MaLR 0 396 1 203 156 0 0 chr4 17685244 17685276 -166603386 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 427 241 32 97 chr4 17685401 17685617 -166603045 + MIR SINE MIR 7 208 -54 511 311 93 11 chr4 17685676 17685859 -166602803 - MIR SINE MIR -47 215 18 820 191 51 33 chr4 17686420 17686635 -166602027 + MLT1C LTR MaLR 7 225 -242 1227 216 0 24 chr4 17686635 17686922 -166601740 + MLT1C LTR MaLR 188 467 0 400 290 67 55 chr4 17687607 17687764 -166600898 + MIR SINE MIR 19 181 -81 1952 150 23 0 chr4 17687764 17688064 -166600598 + AluSq SINE Alu 1 307 -6 400 290 67 55 chr4 17688064 17688144 -166600518 + MIR SINE MIR 181 259 -3 180 220 40 40 chr4 17689032 17689082 -166599580 + L2 LINE L2 3262 3311 -2 362 251 65 47 chr4 17689343 17689506 -166599156 + MIR SINE MIR 25 189 -60 33 0 0 0 chr4 17690116 17690149 -166598513 + AT_rich Low_complexity Low_complexity 1 33 0 384 239 60 84 chr4 17691343 17691510 -166597152 + MIR SINE MIR 79 241 -21 262 274 283 0 chr4 17692186 17692412 -166596250 + L2 LINE L2 2442 2731 -583 241 234 16 0 chr4 17692436 17692500 -166596162 - MIR SINE MIR -141 121 57 180 229 181 24 chr4 17693978 17694061 -166594601 + MIR SINE MIR 21 116 -146 227 315 171 0 chr4 17694819 17694930 -166593732 - MIR SINE MIR -108 154 25 981 254 24 45 chr4 17695694 17696072 -166592590 - MER20B DNA MER1_type -397 386 17 229 280 32 0 chr4 17697377 17697470 -166591192 - MLT1L LTR MaLR -2 613 518 804 205 68 0 chr4 17697719 17697880 -166590782 + MER5A DNA MER1_type 18 189 0 284 347 77 39 chr4 17698561 17699006 -166589656 - L2 LINE L2 -220 3052 2585 2927 195 45 6 chr4 17699037 17699683 -166588979 + L1PB4 LINE L1 5486 6156 0 670 269 124 29 chr4 17699790 17700096 -166588566 + MLT1E LTR MaLR 217 584 -9 897 253 136 82 chr4 17700663 17701184 -166587478 - MLT1H LTR MaLR 0 549 1 490 316 78 42 chr4 17701247 17701440 -166587222 - MIR3 SINE MIR -4 204 5 25 31 0 0 chr4 17701481 17701513 -166587149 + AT_rich Low_complexity Low_complexity 1 32 0 229 170 19 19 chr4 17702027 17702080 -166586582 + (TTG)n Simple_repeat Simple_repeat 2 54 0 721 304 104 29 chr4 17702176 17702521 -166586141 - MLT1I LTR MaLR -7 402 32 326 258 151 0 chr4 17702968 17703061 -166585601 - MLT1E1 LTR MaLR -547 107 1 350 320 89 36 chr4 17703377 17703624 -166585038 + MIR SINE MIR 3 262 0 310 279 66 22 chr4 17704006 17704142 -166584520 + MIR3 SINE MIR 65 206 -2 233 298 32 65 chr4 17704606 17704730 -166583932 + MIR SINE MIR 86 205 -57 1779 113 22 64 chr4 17705187 17705498 -166583164 + LTR24C LTR ERV1 2 299 -336 1495 168 168 14 chr4 17705509 17705795 -166582867 - MER1B DNA MER1_type -8 331 2 1503 115 68 12 chr4 17705802 17706091 -166582571 + LTR24C LTR ERV1 305 626 -9 293 258 45 0 chr4 17706093 17706182 -166582480 + MIR SINE MIR 59 151 -111 210 291 29 48 chr4 17706426 17706529 -166582133 - MIR SINE MIR -21 241 141 3393 183 8 23 chr4 17706915 17707528 -166581134 - MER6A DNA MER2_type -1 604 1 282 306 66 16 chr4 17707905 17708026 -166580636 + L3 LINE CR1 1031 1157 -420 378 199 51 45 chr4 17708049 17708225 -166580437 + (CATA)n Simple_repeat Simple_repeat 4 180 0 267 54 0 0 chr4 17708353 17708390 -166580272 + (CA)n Simple_repeat Simple_repeat 2 38 0 207 0 0 0 chr4 17708718 17708741 -166579921 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 3606 87 15 4 chr4 17708807 17709278 -166579384 + L1PA8A LINE L1 5656 6131 0 204 179 0 0 chr4 17709926 17709965 -166578697 + T-rich Low_complexity Low_complexity 1 39 0 515 224 9 0 chr4 17710331 17710438 -166578224 - MER94 DNA DNA -21 113 6 185 359 109 0 chr4 17710450 17710542 -166578120 - L2 LINE L2 -55 3217 3116 183 306 16 16 chr4 17710597 17710659 -166578003 + L2 LINE L2 3200 3261 -11 390 282 107 0 chr4 17712056 17712187 -166576475 + MIR3 SINE MIR 63 207 -1 240 389 60 28 chr4 17713055 17713271 -166575391 - MIR SINE MIR -38 224 2 266 322 52 0 chr4 17713697 17713812 -166574850 - L3 LINE CR1 -166 1411 1291 202 267 47 58 chr4 17713985 17714071 -166574591 + MIR3 SINE MIR 117 201 -7 2795 191 15 15 chr4 17714435 17715036 -166573626 + L1 LINE L1 4006 4606 -1540 2997 195 31 9 chr4 17716786 17717330 -166571332 + MER74A LTR ERVL 1 556 -2 1217 129 0 62 chr4 17718051 17718279 -166570383 - AluSg/x SINE Alu 0 318 103 872 234 18 60 chr4 17719885 17720103 -166568559 + MIR SINE MIR 29 237 -25 627 229 8 0 chr4 17720339 17720461 -166568201 - MER58B DNA MER1_type -1 340 218 200 307 160 0 chr4 17720507 17720582 -166568080 + L2 LINE L2 3185 3271 -1 2472 184 19 7 chr4 17720888 17721307 -166567355 + MSTA LTR MaLR 1 424 -4 324 303 163 11 chr4 17721472 17721650 -166567012 + MLT1J2 LTR MaLR 80 284 -166 534 141 82 0 chr4 17721693 17721730 -166566932 - MLT2B1 LTR ERVL 0 554 521 258 105 0 0 chr4 17721730 17721768 -166566894 + (CA)n Simple_repeat Simple_repeat 1 38 0 534 141 82 0 chr4 17721768 17721843 -166566819 - MLT2B1 LTR ERVL -33 521 370 236 274 98 59 chr4 17722309 17722411 -166566251 + MIR SINE MIR 35 140 -68 533 318 37 54 chr4 17723671 17723785 -166564877 - L2 LINE L2 -38 3275 3161 294 29 0 0 chr4 17723785 17723820 -166564842 + (TG)n Simple_repeat Simple_repeat 1 35 0 533 318 37 54 chr4 17723820 17724057 -166564605 - L2 LINE L2 -152 3161 2930 2196 162 8 11 chr4 17724089 17724466 -166564196 + MLT1B LTR MaLR 15 390 0 664 268 173 10 chr4 17724749 17725044 -166563618 + LTR16C LTR ERVL 147 489 -2 247 264 0 0 chr4 17725456 17725522 -166563140 - MIR SINE MIR -70 138 86 280 238 158 10 chr4 17725919 17726020 -166562642 - MIR SINE MIR -116 146 31 341 322 41 18 chr4 17726147 17726307 -166562355 + MIR3 SINE MIR 10 143 -65 293 316 44 7 chr4 17726605 17726741 -166561921 + MIR3 SINE MIR 64 204 -4 269 273 164 0 chr4 17727698 17727808 -166560854 + MIR SINE MIR 100 227 -35 245 261 96 76 chr4 17727949 17728106 -166560556 + MIR3 SINE MIR 33 192 -16 601 273 88 19 chr4 17728154 17728370 -166560292 - MIR SINE MIR -10 252 22 335 291 115 20 chr4 17728387 17728535 -166560127 - MIR SINE MIR -91 171 10 2491 145 8 23 chr4 17729203 17729596 -166559066 + MLT1B LTR MaLR 2 388 -2 1770 268 21 60 chr4 17730020 17730587 -166558075 + MLT1H LTR MaLR 3 547 -2 723 320 139 34 chr4 17730738 17731269 -166557393 + MLT1G1 LTR MaLR 1 587 -8 208 328 34 28 chr4 17731279 17731449 -166557213 + MIR SINE MIR 6 177 -31 514 267 9 0 chr4 17732684 17732789 -166555873 + MER115 DNA AcHobo 154 259 -434 265 339 66 0 chr4 17733532 17733653 -166555009 - MIR SINE MIR -85 177 49 518 231 17 34 chr4 17733899 17734016 -166554646 + MLT1E LTR MaLR 51 165 -428 2471 176 0 2 chr4 17734062 17734459 -166554203 + MER57A LTR ERV1 4 399 -4 9571 155 15 1 chr4 17734485 17736864 -166551798 + L1PA13 LINE L1 3701 6144 -19 239 281 0 0 chr4 17736899 17736956 -166551706 + MLT1E LTR MaLR 217 273 -320 1519 211 100 26 chr4 17736968 17737440 -166551222 + LTR49 LTR ERV1 159 572 -23 1570 206 25 13 chr4 17737467 17737782 -166550880 + MLT1E LTR MaLR 275 593 0 264 282 0 14 chr4 17737849 17737920 -166550742 + (TG)n Simple_repeat Simple_repeat 2 71 0 742 284 78 4 chr4 17738074 17738306 -166550356 + MIR SINE MIR 13 261 -1 255 292 14 14 chr4 17739163 17739235 -166549427 - MIR SINE MIR -112 96 25 245 360 9 18 chr4 17739285 17739399 -166549263 - MIR SINE MIR -137 125 13 480 307 103 39 chr4 17739756 17740050 -166548612 + LTR16A LTR ERVL 98 447 -3 1238 312 60 22 chr4 17740163 17741217 -166547445 + HERV16 LTR ERVL 127 1258 -3738 832 344 97 16 chr4 17741575 17742313 -166546349 + HERV16 LTR ERVL 1742 2547 -2542 950 352 28 46 chr4 17742346 17743203 -166545459 + HERV16 LTR ERVL 2994 3527 -1469 1205 355 45 33 chr4 17743323 17744177 -166544485 + HERV16 LTR ERVL 4052 4915 -849 239 159 45 0 chr4 17744234 17744278 -166544384 - Tigger4(Zombi) DNA MER2_type -223 2508 2463 330 236 18 45 chr4 17744477 17744587 -166544075 + HERV16 LTR ERVL 4787 4893 -103 298 279 156 13 chr4 17744840 17745077 -166543585 + LTR16B LTR ERVL 134 449 -1 288 308 85 15 chr4 17745462 17745592 -166543070 - L2 LINE L2 -13 3259 3121 2228 56 42 7 chr4 17745747 17746032 -166542630 + AluY SINE Alu 1 295 -16 220 239 15 15 chr4 17746776 17746843 -166541819 + GA-rich Low_complexity Low_complexity 4 70 0 2348 61 11 0 chr4 17747501 17747811 -166540851 + AluY SINE Alu 1 313 0 2058 143 143 13 chr4 17748087 17748466 -166540196 - MSTA LTR MaLR 0 428 1 2405 211 16 21 chr4 17748547 17749059 -166539603 - MER89 LTR ERV1 0 559 51 476 219 74 60 chr4 17749443 17749658 -166539004 - MER89 LTR ERV1 -340 219 2 213 300 62 12 chr4 17749659 17749739 -166538923 - MIR SINE MIR -59 203 120 2088 153 54 6 chr4 17750732 17751086 -166537576 - MLT1B LTR MaLR -7 383 13 232 367 55 23 chr4 17753231 17753359 -166535303 - MIR SINE MIR -111 151 20 218 245 0 20 chr4 17753720 17753769 -166534893 + MIR3 SINE MIR 148 195 -13 447 289 174 64 chr4 17755896 17756305 -166532357 + L2 LINE L2 2857 3310 -3 324 383 0 0 chr4 17756730 17756850 -166531812 - L1ME LINE L1 -447 5723 5604 225 264 28 14 chr4 17757029 17757101 -166531561 + (TATATG)n Simple_repeat Simple_repeat 6 78 0 401 301 107 24 chr4 17757391 17757444 -166531218 - L1M4 LINE L1 -3158 2988 2941 1975 143 24 0 chr4 17757444 17757731 -166530931 - AluSx SINE Alu -18 294 1 401 301 107 24 chr4 17757731 17757966 -166530696 - L1M4 LINE L1 -3205 2941 2676 417 276 127 56 chr4 17758031 17758332 -166530330 - L1M4 LINE L1 -3594 2552 2215 2313 93 0 0 chr4 17758332 17758632 -166530030 + AluY SINE Alu 1 300 -11 417 276 127 56 chr4 17758632 17758725 -166529937 - L1M4 LINE L1 -3931 2215 2130 314 260 114 24 chr4 17759500 17759623 -166529039 - MLT1J2 LTR MaLR -37 413 280 26 0 0 0 chr4 17760137 17760163 -166528499 + AT_rich Low_complexity Low_complexity 1 26 0 281 334 50 68 chr4 17761325 17761601 -166527061 - L2 LINE L2 -280 2992 2722 1975 194 60 34 chr4 17761727 17762144 -166526518 - MSTA LTR MaLR 0 428 1 210 204 45 0 chr4 17762422 17762466 -166526196 - L2 LINE L2 0 3272 3227 500 331 37 34 chr4 17762506 17762802 -166525860 - LTR16A1 LTR ERVL -14 443 147 2357 149 36 48 chr4 17763440 17763768 -166524894 - L1MA5A LINE L1 -4 6293 5972 679 220 0 0 chr4 17763768 17763886 -166524776 - FLAM_C SINE Alu -15 118 1 2357 149 36 48 chr4 17763886 17764060 -166524602 - L1MA5A LINE L1 -325 5972 5797 333 0 0 0 chr4 17764061 17764098 -166524564 + (TG)n Simple_repeat Simple_repeat 2 38 0 5321 72 11 23 chr4 17764490 17765226 -166523436 + L1PA7 LINE L1 5426 6152 -2 4441 39 2 0 chr4 17765573 17766112 -166522550 - L1PA4 LINE L1 -2 6153 5614 288 288 122 7 chr4 17767750 17767889 -166520773 + L1MC/D LINE L1 5615 5769 -2039 294 29 0 0 chr4 17768016 17768051 -166520611 + (TG)n Simple_repeat Simple_repeat 2 36 0 2143 71 7 3 chr4 17768967 17769263 -166519399 - L1PA7 LINE L1 0 6154 5858 412 320 115 15 chr4 17770903 17771293 -166517369 + ERVL LTR ERVL 4713 5141 -623 240 366 9 36 chr4 17772266 17772378 -166516284 - L2 LINE L2 -828 2486 2378 926 205 87 111 chr4 17773628 17773671 -166514991 - MLT2D LTR ERVL 0 414 372 393 22 0 0 chr4 17773671 17773717 -166514945 + (TAGA)n Simple_repeat Simple_repeat 3 48 0 926 205 87 111 chr4 17773717 17774097 -166514565 - MLT2D LTR ERVL -42 372 1 362 380 80 12 chr4 17774408 17774658 -166514004 - L3 LINE CR1 -8 1569 1303 238 272 78 29 chr4 17775098 17775201 -166513461 + MIR SINE MIR 150 257 -5 959 214 130 101 chr4 17775744 17776259 -166512403 - MLT1F1 LTR MaLR -10 557 3 180 111 0 0 chr4 17776741 17776768 -166511894 + (ATGGTG)n Simple_repeat Simple_repeat 4 30 0 778 256 58 22 chr4 17777174 17777397 -166511265 - MIR SINE MIR -20 242 12 229 338 78 60 chr4 17777460 17777741 -166510921 - L2 LINE L2 -829 2485 2200 621 242 13 19 chr4 17777746 17777903 -166510759 + MLT1J2 LTR MaLR 43 198 -252 519 229 46 46 chr4 17779440 17779593 -166509069 - MIR SINE MIR -87 175 23 320 319 62 0 chr4 17780422 17780535 -166508127 + MIR SINE MIR 90 209 -53 287 330 75 0 chr4 17781484 17781590 -166507072 + L2 LINE L2 3107 3220 -52 3650 153 146 40 chr4 17781590 17782405 -166506257 + MER4D LTR ERV1 3 903 0 582 104 17 17 chr4 17782614 17782729 -166505933 + (GGAA)n Simple_repeat Simple_repeat 2 116 0 254 268 73 57 chr4 17782932 17783055 -166505607 + MIR SINE MIR 17 141 -67 298 378 19 7 chr4 17783504 17783695 -166504967 + MIR SINE MIR 15 206 -56 1345 206 41 25 chr4 17783851 17784312 -166504350 + MLT2B2 LTR ERVL 1 515 0 21 0 0 0 chr4 17785400 17785421 -166503241 + AT_rich Low_complexity Low_complexity 1 21 0 634 336 67 30 chr4 17785469 17785799 -166502863 + L2 LINE L2 2635 2976 -338 4505 157 43 27 chr4 17787053 17787940 -166500722 - L1MA8 LINE L1 -55 6236 5328 1556 196 7 11 chr4 17787940 17788255 -166500407 - AluSx SINE Alu 0 312 14 4505 157 43 27 chr4 17788255 17788410 -166500252 - L1MA8 LINE L1 -963 5328 5177 2364 171 28 2 chr4 17788407 17788880 -166499782 + L1MA8 LINE L1 4726 5210 -936 * 539 205 9 0 chr4 17788884 17788996 -166499666 - MIR SINE MIR -64 198 86 395 216 73 103 chr4 17790848 17791052 -166497610 - MER106A DNA MER1_type -37 199 2 407 313 13 27 chr4 17791821 17791971 -166496691 + MIR3 SINE MIR 54 201 -7 225 376 6 6 chr4 17792162 17792327 -166496335 + GA-rich Low_complexity Low_complexity 2 166 0 294 319 25 13 chr4 17792354 17792511 -166496151 + (CAGAGA)n Simple_repeat Simple_repeat 2 160 0 238 310 28 0 chr4 17793472 17793543 -166495119 + L2 LINE L2 3236 3308 -5 181 250 77 19 chr4 17793988 17794040 -166494622 + L2 LINE L2 3259 3313 0 180 0 0 0 chr4 17794328 17794348 -166494314 + (A)n Simple_repeat Simple_repeat 1 20 0 345 303 174 13 chr4 17795314 17795469 -166493193 - MIR SINE MIR -5 257 78 731 243 27 5 chr4 17795472 17795657 -166493005 - MER5A DNA MER1_type 0 189 1 205 242 20 121 chr4 17795751 17795850 -166492812 - MIR SINE MIR -102 160 72 224 345 0 17 chr4 17797611 17797727 -166490935 + CT-rich Low_complexity Low_complexity 4 117 0 1008 224 0 0 chr4 17797819 17798020 -166490642 - MLT1B LTR MaLR 0 390 190 345 109 0 0 chr4 17798022 17798077 -166490585 + (GA)n Simple_repeat Simple_repeat 1 55 0 527 240 35 23 chr4 17798087 17798258 -166490404 - MLT1B LTR MaLR -215 175 3 211 303 30 15 chr4 17798280 17798346 -166490316 + MIR3 SINE MIR 108 174 -34 236 343 112 12 chr4 17799510 17799761 -166488901 + LTR16A LTR ERVL 175 450 0 702 222 155 4 chr4 17799996 17800234 -166488428 - MLT1E1 LTR MaLR -1 653 351 467 94 0 0 chr4 17800278 17800342 -166488320 - MLT1E1 LTR MaLR -391 263 200 380 181 14 0 chr4 17800342 17800414 -166488248 - MLT1E1 LTR MaLR -416 238 166 417 308 127 9 chr4 17800459 17800680 -166487982 - MLT1I LTR MaLR -162 247 1 243 0 0 0 chr4 17802096 17802123 -166486539 + (A)n Simple_repeat Simple_repeat 1 27 0 322 41 0 0 chr4 17803333 17803377 -166485285 + MADE1 DNA Mariner 41 79 -1 905 124 0 51 chr4 17804684 17804821 -166483841 - FLAM_C SINE Alu -3 130 1 336 268 37 0 chr4 17804875 17804957 -166483705 - L2 LINE L2 -2 3270 3186 205 370 14 0 chr4 17805055 17805128 -166483534 - MIR SINE MIR -68 140 67 350 303 48 28 chr4 17805144 17805289 -166483373 - LTR33 LTR ERVL 0 521 374 466 128 13 13 chr4 17805294 17805372 -166483290 + MADE1 DNA Mariner 3 80 0 490 304 87 27 chr4 17805412 17805631 -166483031 - LTR33 LTR ERVL -263 260 60 243 247 34 130 chr4 17805846 17805992 -166482670 - MLT1I-int LTR MaLR -208 1163 1032 43480 35 21 1 chr4 17806392 17812424 -166476238 + L1PA2 LINE L1 1 6155 0 877 263 75 11 chr4 17812483 17812764 -166475898 + ERVL-E LTR ERVL 5138 5436 -328 406 270 0 11 chr4 17813072 17813161 -166475501 + MLT2E LTR ERVL 32 119 -509 308 255 0 69 chr4 17813381 17813483 -166475179 + MLT1H LTR MaLR 453 547 -2 383 197 14 0 chr4 17813552 17813623 -166475039 + Tigger2 DNA MER2_type 1 72 -2646 250 290 0 0 chr4 17813844 17813913 -166474749 - MIR SINE MIR -85 177 109 240 157 0 39 chr4 17814206 17814257 -166474405 + Tigger2 DNA MER2_type 2284 2332 -386 223 290 118 11 chr4 17814370 17814463 -166474199 + L2 LINE L2 3166 3268 -4 330 343 230 10 chr4 17814574 17814778 -166473884 + MIR SINE MIR 3 251 -11 254 321 0 0 chr4 17815257 17815341 -166473321 + MIR SINE MIR 109 192 -70 254 314 29 19 chr4 17815389 17815494 -166473168 + L2 LINE L2 2712 2817 -497 8206 23 2 0 chr4 17815624 17816567 -166472095 + L1PA3 LINE L1 5211 6155 0 1741 189 0 3 chr4 17817509 17817811 -166470851 - AluJb SINE Alu -8 304 4 2330 149 28 6 chr4 17818066 17818422 -166470240 - THE1B LTR MaLR 0 364 1 10978 105 13 60 chr4 17818422 17820076 -166468586 - THE1B-int LTR MaLR 0 1580 4 2515 140 20 0 chr4 17820078 17820435 -166468227 - THE1B LTR MaLR 0 364 1 478 283 146 29 chr4 17820991 17821306 -166467356 + L3 LINE CR1 1142 1493 -84 373 389 79 5 chr4 17821325 17821541 -166467121 + L3 LINE CR1 1261 1492 -85 775 229 81 18 chr4 17821696 17821919 -166466743 - MIR SINE MIR -21 241 5 267 227 0 0 chr4 17822322 17822388 -166466274 + GA-rich Low_complexity Low_complexity 4 69 0 317 237 0 54 chr4 17822914 17823007 -166465655 - MIR3 SINE MIR -7 201 114 2106 247 65 19 chr4 17823700 17824344 -166464318 + L1MC4a LINE L1 6912 7585 -223 207 0 0 0 chr4 17824350 17824373 -166464289 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 831 237 6 0 chr4 17824374 17824551 -166464111 + AluJo SINE Alu 123 300 -12 718 227 27 41 chr4 17824576 17824796 -166463866 + L1MD3 LINE L1 7773 7989 -6 189 0 0 0 chr4 17824796 17824817 -166463845 + (GAA)n Simple_repeat Simple_repeat 1 21 0 1020 145 10 97 chr4 17825022 17825229 -166463433 + AluJo SINE Alu 94 282 -30 29 28 0 0 chr4 17825236 17825272 -166463390 + AT_rich Low_complexity Low_complexity 1 36 0 2170 136 0 0 chr4 17825877 17826179 -166462483 + AluSx SINE Alu 1 302 -10 266 288 224 0 chr4 17826523 17826648 -166462014 - L2 LINE L2 -229 3043 2891 728 177 48 0 chr4 17826663 17826787 -166461875 + FLAM_C SINE Alu 3 132 -1 2199 117 0 0 chr4 17826959 17827257 -166461405 + AluSx SINE Alu 1 298 -14 207 0 0 0 chr4 17827383 17827406 -166461256 + (A)n Simple_repeat Simple_repeat 1 23 0 519 282 23 50 chr4 17827671 17827891 -166460771 - MIR SINE MIR 0 262 49 232 333 46 9 chr4 17828420 17828528 -166460134 - MIR SINE MIR -150 112 1 449 259 56 7 chr4 17829201 17829344 -166459318 - LTR67 LTR ERVL 0 557 408 227 300 100 0 chr4 17829573 17829643 -166459019 + MIR SINE MIR 36 112 -96 354 328 76 12 chr4 17829865 17830036 -166458626 + MIR SINE MIR 48 229 -33 1812 215 104 7 chr4 17831945 17832368 -166456294 + MLT1C LTR MaLR 4 467 0 259 276 31 31 chr4 17832538 17832636 -166456026 - MIR SINE MIR -133 129 32 303 264 182 9 chr4 17833423 17833533 -166455129 + MIR SINE MIR 16 144 -64 1519 184 21 3 chr4 17834228 17834511 -166454151 - AluJo SINE Alu -24 288 1 204 326 67 0 chr4 17834633 17834722 -166453940 + L3 LINE CR1 1261 1355 -222 225 347 20 0 chr4 17835487 17835585 -166453077 + MIR SINE MIR 162 261 -1 271 310 225 14 chr4 17836294 17836589 -166452073 + L2 LINE L2 2714 3070 -243 261 0 0 0 chr4 17836673 17836702 -166451960 + (CA)n Simple_repeat Simple_repeat 2 30 0 3337 102 7 9 chr4 17837426 17837885 -166450777 - L1PA13 LINE L1 -3 6160 5703 360 81 32 0 chr4 17837885 17837947 -166450715 + L1P LINE L1 5267 5330 -824 320 355 31 0 chr4 17838761 17838932 -166449730 - MIR SINE MIR -63 145 4 343 259 14 109 chr4 17840842 17840989 -166447673 + MIR SINE MIR 29 161 -101 6227 42 3 1 chr4 17841897 17842605 -166446057 - L1PA5 LINE L1 -4 6150 5442 2712 164 9 2 chr4 17842657 17843109 -166445553 + L1PA13 LINE L1 5709 6163 0 289 273 149 19 chr4 17844605 17844759 -166443903 + LTR16A LTR ERVL 277 450 0 759 215 193 34 chr4 17844996 17845463 -166443199 - MLT1E1 LTR MaLR -1 653 72 489 308 127 9 chr4 17845460 17845681 -166442981 - MLT1I LTR MaLR -162 247 1 * 369 0 0 0 chr4 17847092 17847133 -166441529 + (A)n Simple_repeat Simple_repeat 1 41 0 322 41 0 0 chr4 17848344 17848388 -166440274 + MADE1 DNA Mariner 41 79 -1 905 124 0 51 chr4 17849695 17849832 -166438830 - FLAM_C SINE Alu -3 130 1 336 268 37 0 chr4 17849886 17849968 -166438694 - L2 LINE L2 -2 3270 3186 205 370 14 0 chr4 17850066 17850139 -166438523 - MIR SINE MIR -68 140 67 350 303 48 28 chr4 17850155 17850300 -166438362 - LTR33 LTR ERVL 0 521 374 466 128 13 13 chr4 17850305 17850383 -166438279 + MADE1 DNA Mariner 3 80 0 499 303 85 32 chr4 17850423 17850643 -166438019 - LTR33 LTR ERVL -263 260 60 243 247 34 130 chr4 17850858 17851004 -166437658 - MLT1I-int LTR MaLR -208 1163 1032 525 322 22 4 chr4 17851125 17851352 -166437310 + HERVL-E LTR ERVL 4751 4981 -673 30933 33 13 1 chr4 17851405 17857437 -166431225 + L1PA2 LINE L1 1 6155 0 877 263 75 11 chr4 17857496 17857777 -166430885 + HERVL-E LTR ERVL 5138 5436 -328 390 281 0 11 chr4 17858085 17858174 -166430488 + MLT2E LTR ERVL 32 119 -509 308 255 0 69 chr4 17858394 17858496 -166430166 + MLT1H LTR MaLR 453 547 -2 383 197 14 0 chr4 17858565 17858636 -166430026 + Tigger2 DNA MER2_type 1 72 -2646 250 290 0 0 chr4 17858857 17858926 -166429736 - MIR SINE MIR -85 177 109 240 157 0 39 chr4 17859219 17859270 -166429392 + Tigger2 DNA MER2_type 2284 2332 -386 223 290 118 11 chr4 17859383 17859476 -166429186 + L2 LINE L2 3166 3268 -4 330 343 230 10 chr4 17859587 17859791 -166428871 + MIR SINE MIR 3 251 -11 254 321 0 0 chr4 17860270 17860354 -166428308 + MIR SINE MIR 109 192 -70 254 314 29 19 chr4 17860402 17860507 -166428155 + L2 LINE L2 2712 2817 -497 8134 21 1 0 chr4 17860637 17861604 -166427058 + L1PA3 LINE L1 5211 6178 0 31 0 0 0 chr4 17861616 17861647 -166427015 + AT_rich Low_complexity Low_complexity 1 31 0 214 214 0 71 chr4 17862020 17862076 -166426586 + L2 LINE L2 3262 3313 0 461 286 89 33 chr4 17862843 17863056 -166425606 + MIR SINE MIR 38 262 0 1771 249 15 36 chr4 17863380 17863857 -166424805 + MLT1C LTR MaLR 1 467 0 261 163 0 0 chr4 17865424 17865473 -166423189 + (CA)n Simple_repeat Simple_repeat 1 49 0 197 299 51 66 chr4 17865708 17865845 -166422817 + MIR SINE MIR 89 223 -39 260 320 117 8 chr4 17866121 17866249 -166422413 + MIR3 SINE MIR 11 152 -56 490 319 38 0 chr4 17866487 17866647 -166422015 + MIR SINE MIR 60 225 -37 351 316 38 15 chr4 17866777 17866910 -166421752 + L2 LINE L2 3136 3271 -1 557 282 26 13 chr4 17866921 17867077 -166421585 - MER5B DNA MER1_type -1 177 20 222 274 0 0 chr4 17867759 17867810 -166420852 + GA-rich Low_complexity Low_complexity 5 55 0 259 313 0 12 chr4 17867957 17868037 -166420625 - L2 LINE L2 -12 3301 3223 234 274 68 41 chr4 17868078 17868151 -166420511 + L2 LINE L2 3198 3272 0 926 216 95 54 chr4 17868373 17868688 -166419974 - MLT1H LTR MaLR -221 328 1 875 285 11 31 chr4 17869020 17869280 -166419382 - MIR SINE MIR -5 257 3 2286 102 0 16 chr4 17870370 17870684 -166417978 + AluSp SINE Alu 1 309 -4 218 32 32 0 chr4 17871758 17871789 -166416873 + (TG)n Simple_repeat Simple_repeat 2 33 0 3481 169 22 45 chr4 17871923 17872657 -166416005 + L1MA10 LINE L1 5616 6332 -2 375 23 0 0 chr4 17873695 17873739 -166414923 + (CA)n Simple_repeat Simple_repeat 2 45 0 2556 126 8 126 chr4 17873850 17874376 -166414286 + LTR24 LTR ERV1 2 465 -2 591 295 58 35 chr4 17874644 17874902 -166413760 + MLT2F LTR ERVL 4 267 -396 1094 232 146 34 chr4 17874960 17875343 -166413319 + MLT2F LTR ERVL 237 662 -1 422 310 14 21 chr4 17875779 17875924 -166412738 + MLT1H LTR MaLR 81 224 -325 337 216 21 21 chr4 17876479 17876576 -166412086 - L1ME4a LINE L1 -195 5926 5830 225 262 16 0 chr4 17876875 17876936 -166411726 + (AATTG)n Simple_repeat Simple_repeat 1 62 0 290 335 61 24 chr4 17877649 17877813 -166410849 - MIR SINE MIR -71 191 22 544 300 83 9 chr4 17878671 17878901 -166409761 - MIR SINE MIR 0 262 16 1278 182 16 4 chr4 17879566 17879813 -166408849 + L1PA15 LINE L1 5915 6164 -1 241 386 36 18 chr4 17881648 17881668 -166406994 - L2 LINE L2 -819 2495 2477 2591 157 54 5 chr4 17881668 17882076 -166406586 + MSTA LTR MaLR 1 428 0 241 386 36 18 chr4 17882076 17882278 -166406384 - L2 LINE L2 -837 2477 2269 519 305 90 30 chr4 17882452 17882685 -166405977 + MIR SINE MIR 11 257 -5 1678 150 41 103 chr4 17882978 17883365 -166405297 + MLT1A1 LTR MaLR 3 365 0 390 294 110 12 chr4 17883907 17884070 -166404592 - MIR SINE MIR -73 189 11 397 291 61 61 chr4 17884540 17884633 -166404029 - MIR SINE MIR -51 211 119 2577 184 63 115 chr4 17884633 17885400 -166403262 - LTR8A LTR ERV1 0 727 1 397 291 61 61 chr4 17885400 17885502 -166403160 - MIR SINE MIR -142 120 16 1869 203 38 129 chr4 17885521 17886147 -166402515 + MER21B LTR ERV1 1 569 -294 342 241 63 0 chr4 17886158 17886219 -166402443 - LTR49 LTR ERV1 0 595 530 1871 145 3 3 chr4 17886219 17886502 -166402160 + MER49 LTR ERV1 1 283 -640 1345 201 42 40 chr4 17886533 17886887 -166401775 + MER4D LTR ERV1 549 903 0 * 3191 135 15 25 chr4 17886887 17887429 -166401233 - LTR49 LTR ERV1 -59 536 1 707 237 93 47 chr4 17887429 17887702 -166400960 + MER21B LTR ERV1 576 861 -2 345 75 0 0 chr4 17887934 17887987 -166400675 + (CA)n Simple_repeat Simple_repeat 2 54 0 277 292 22 11 chr4 17888062 17888151 -166400511 + L2 LINE L2 3183 3272 0 286 182 36 0 chr4 17888655 17888710 -166399952 - MER20 DNA MER1_type -49 170 114 1976 135 7 0 chr4 17889008 17889313 -166399349 + AluSx SINE Alu 1 307 0 3013 174 22 15 chr4 17889443 17889982 -166398680 + L1MB2 LINE L1 5619 6161 -10 2137 139 0 0 chr4 17890713 17891015 -166397647 - AluSx SINE Alu -5 307 6 320 258 89 9 chr4 17891336 17891455 -166397207 + MIR3 SINE MIR 79 208 0 239 356 53 8 chr4 17892261 17892393 -166396269 + MIR SINE MIR 84 221 -41 273 306 65 43 chr4 17892856 17893042 -166395620 - MIR SINE MIR -67 195 6 2890 133 11 32 chr4 17893861 17894303 -166394359 - Tigger2a DNA MER2_type -1 433 1 207 0 0 0 chr4 17894336 17894359 -166394303 + (A)n Simple_repeat Simple_repeat 1 23 0 224 299 45 0 chr4 17894559 17894626 -166394036 - L2 LINE L2 -5 3308 3239 232 297 0 0 chr4 17894978 17895052 -166393610 + MIR SINE MIR 176 249 -13 224 284 90 0 chr4 17895211 17895278 -166393384 + L3 LINE CR1 991 1063 -514 661 130 61 0 chr4 17895430 17895545 -166393117 + L1MB4 LINE L1 6059 6180 0 225 298 18 0 chr4 17895569 17895626 -166393036 + L3 LINE CR1 1160 1217 -360 1148 259 60 11 chr4 17896111 17896621 -166392041 - MLT1G3 LTR MaLR 0 590 1 631 184 52 0 chr4 17896827 17896961 -166391701 - MER2 DNA MER2_type -170 69 16 426 69 0 0 chr4 17897101 17897159 -166391503 + (TA)n Simple_repeat Simple_repeat 1 58 0 726 236 133 112 chr4 17897627 17898064 -166390598 + MLT1J LTR MaLR 1 446 -65 378 244 85 30 chr4 17899400 17899564 -166389098 + MER5B DNA MER1_type 3 175 -3 369 0 0 0 chr4 17899573 17899614 -166389048 + (TG)n Simple_repeat Simple_repeat 2 42 0 1512 178 40 0 chr4 17899617 17899915 -166388747 - L1MA9 LINE L1 -165 6147 5838 759 184 7 14 chr4 17899918 17900065 -166388597 + L1MA9 LINE L1 6167 6312 0 2405 175 11 30 chr4 17900707 17901142 -166387520 - MSTB1 LTR MaLR -2 430 4 1685 230 139 19 chr4 17901253 17901644 -166387018 - MER77 LTR ERV1 -35 570 114 2189 118 3 0 chr4 17901644 17901948 -166386714 + AluSx SINE Alu 1 305 -7 1685 230 139 19 chr4 17901948 17902017 -166386645 - MER77 LTR ERV1 -491 114 55 304 228 51 59 chr4 17902055 17902176 -166386486 + MIR SINE MIR 33 151 -62 2123 160 9 15 chr4 17902624 17902961 -166385701 - MER1B DNA MER1_type -2 335 1 2013 107 20 17 chr4 17902981 17903279 -166385383 + AluY SINE Alu 1 299 -12 2462 148 48 10 chr4 17903580 17903992 -166384670 + MSTA LTR MaLR 1 428 0 440 201 14 101 chr4 17904015 17904154 -166384508 - L2 LINE L2 0 3313 3187 449 291 55 6 chr4 17904198 17904363 -166384299 + MIR SINE MIR 69 241 -21 336 292 69 42 chr4 17904579 17904723 -166383939 + MIR3 SINE MIR 13 160 -48 247 273 136 0 chr4 17904727 17904815 -166383847 + MER5B DNA MER1_type 6 105 -73 462 302 137 0 chr4 17904929 17905111 -166383551 - MIR SINE MIR -34 228 22 817 225 26 62 chr4 17905412 17905639 -166383023 - MER20 DNA MER1_type 0 219 1 229 310 55 48 chr4 17906516 17906661 -166382001 + MIR SINE MIR 71 216 -46 244 227 0 62 chr4 17907060 17907157 -166381505 + L1MC4 LINE L1 6613 6703 -1339 275 247 47 0 chr4 17907164 17907249 -166381413 - L1MC4 LINE L1 -1340 6702 6614 242 173 77 0 chr4 17907264 17907316 -166381346 - L1MD3 LINE L1 -1328 6667 6612 237 174 0 0 chr4 17907317 17907363 -166381299 - LTR66 LTR ERVL -171 439 394 3558 170 15 70 chr4 17907564 17908293 -166380369 - LTR8 LTR ERV1 -2 689 1 192 300 42 58 chr4 17908313 17908433 -166380229 - MIR SINE MIR -56 206 89 317 244 12 37 chr4 17908819 17908901 -166379761 - MLT1K LTR MaLR -22 566 487 326 339 71 71 chr4 17908979 17909262 -166379400 - MLT1K LTR MaLR -237 351 69 279 0 0 0 chr4 17909296 17909327 -166379335 + (CA)n Simple_repeat Simple_repeat 2 32 0 302 191 128 21 chr4 17910348 17910442 -166378220 - MIR SINE MIR -56 206 103 224 327 0 0 chr4 17911666 17911721 -166376941 + MIR SINE MIR 48 102 -160 906 226 20 15 chr4 17912135 17912330 -166376332 - MER58A DNA MER1_type 0 224 29 2026 118 18 0 chr4 17912607 17912886 -166375776 - AluSq SINE Alu -25 288 5 956 180 74 21 chr4 17912895 17913084 -166375578 - AluJb SINE Alu -9 303 105 2561 127 70 70 chr4 17913226 17913744 -166374918 - LTR1 LTR ERV1 -267 518 1 712 133 19 0 chr4 17913787 17913892 -166374770 - AluJb SINE Alu -204 108 2 359 281 45 86 chr4 17914226 17914493 -166374169 + MIR SINE MIR 3 256 -6 557 136 107 0 chr4 17915792 17915895 -166372767 - MER53 DNA DNA -75 114 1 209 353 62 86 chr4 17916180 17916424 -166372238 + L2 LINE L2 3032 3269 -3 281 50 0 67 chr4 17916985 17917045 -166371617 + (TA)n Simple_repeat Simple_repeat 2 57 0 2867 164 64 29 chr4 17917051 17917804 -166370858 + MER21A LTR ERV1 1 891 -40 189 0 0 0 chr4 17917804 17917825 -166370837 + (TGG)n Simple_repeat Simple_repeat 3 23 0 2867 164 64 29 chr4 17917825 17917868 -166370794 + MER21A LTR ERV1 891 931 0 1020 268 160 11 chr4 17917911 17918465 -166370197 + L2 LINE L2 2685 3311 -2 335 336 83 23 chr4 17919056 17919273 -166369389 + MIR SINE MIR 20 249 -13 1617 185 3 102 chr4 17920163 17920498 -166368164 + AluJb SINE Alu 1 302 0 21 0 0 0 chr4 17920707 17920728 -166367934 + AT_rich Low_complexity Low_complexity 1 21 0 1040 113 7 0 chr4 17921287 17921428 -166367234 - L1PA10 LINE L1 0 6168 6027 257 294 28 28 chr4 17922164 17922307 -166366355 + L1MC/D LINE L1 5760 5902 -1906 34 24 0 0 chr4 17922482 17922523 -166366139 + AT_rich Low_complexity Low_complexity 1 41 0 249 159 16 32 chr4 17923308 17923371 -166365291 + LTR1 LTR ERV1 2 63 -722 611 98 0 0 chr4 17923371 17923453 -166365209 - L1PA10 LINE L1 -60 6108 6027 3773 155 34 26 chr4 17923781 17924484 -166364178 + LTR1 LTR ERV1 77 785 0 2733 111 8 3 chr4 17924825 17925187 -166363475 + THE1B LTR MaLR 1 364 0 357 308 171 21 chr4 17925258 17925492 -166363170 + MER102a DNA MER1_type 62 330 0 714 264 169 34 chr4 17925513 17925862 -166362800 - MLT1C LTR MaLR 0 467 72 198 0 0 0 chr4 17925868 17925890 -166362772 + (A)n Simple_repeat Simple_repeat 1 22 0 352 314 0 48 chr4 17926795 17926919 -166361743 - MIR SINE MIR -72 136 19 275 343 53 30 chr4 17927487 17927656 -166361006 - L2 LINE L2 -455 2859 2687 216 0 0 0 chr4 17927789 17927813 -166360849 + (A)n Simple_repeat Simple_repeat 1 24 0 282 307 0 0 chr4 17927850 17927951 -166360711 - Charlie8 DNA MER1_type -2245 172 72 537 323 139 19 chr4 17928907 17929254 -166359408 + L2 LINE L2 2677 3057 -256 857 280 72 13 chr4 17929313 17929688 -166358974 + LTR16B LTR ERVL 1 397 -67 359 347 13 13 chr4 17929755 17929905 -166358757 + L2 LINE L2 3159 3308 -5 237 293 0 0 chr4 17930040 17930098 -166358564 + L2 LINE L2 3207 3264 -8 282 305 94 54 chr4 17930218 17930569 -166358093 + L2 LINE L2 2382 2746 -568 8087 29 0 0 chr4 17930989 17932660 -166356002 + L1PA3 LINE L1 4435 6105 -50 196 188 21 21 chr4 17933144 17933192 -166355470 + MIR3 SINE MIR 153 200 -8 194 0 0 37 chr4 17933361 17933388 -166355274 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 344 338 76 31 chr4 17933432 17933855 -166354807 + L1ME4a LINE L1 5616 6057 -64 236 310 0 60 chr4 17934237 17934337 -166354325 + MIR SINE MIR 57 150 -112 222 260 0 65 chr4 17934438 17934515 -166354147 + L2 LINE L2 3196 3267 -5 201 152 0 0 chr4 17935395 17935428 -166353234 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 229 286 0 29 chr4 17935468 17935538 -166353124 - L2 LINE L2 0 3272 3205 351 273 40 0 chr4 17935585 17935684 -166352978 - MIR SINE MIR -158 104 2 228 392 53 12 chr4 17935848 17936019 -166352643 - L2 LINE L2 -226 3046 2869 399 305 19 76 chr4 17936889 17937099 -166351563 - MIR SINE MIR -28 234 37 199 296 61 10 chr4 17937219 17937317 -166351345 + MIR3 SINE MIR 64 166 -42 2317 162 55 0 chr4 17938520 17938902 -166349760 - MER57A LTR ERV1 0 403 1 233 200 20 20 chr4 17938959 17939009 -166349653 + L2 LINE L2 3137 3186 -86 510 17 0 0 chr4 17939046 17939105 -166349557 + (TG)n Simple_repeat Simple_repeat 2 60 0 330 217 43 11 chr4 17939947 17940039 -166348623 - MIR SINE MIR -71 191 97 1332 286 60 40 chr4 17940043 17940342 -166348320 - MLT1L LTR MaLR -6 609 317 1977 202 52 39 chr4 17940342 17940803 -166347859 - MLT1C LTR MaLR 0 467 1 1332 286 60 40 chr4 17940803 17941100 -166347562 - MLT1L LTR MaLR -298 317 1 522 291 44 33 chr4 17941808 17941990 -166346672 + MIR3 SINE MIR 9 192 -16 415 258 121 8 chr4 17942200 17942332 -166346330 - MIR SINE MIR -79 183 37 245 322 87 34 chr4 17942533 17942682 -166345980 + L3 LINE CR1 1367 1523 -54 4658 194 40 34 chr4 17942770 17944646 -166344016 + L1MC2 LINE L1 4332 6223 -121 2153 133 41 32 chr4 17945084 17945453 -166343209 - THE1C LTR MaLR 0 375 4 866 236 10 15 chr4 17945754 17945949 -166342713 + MLT1A1 LTR MaLR 158 351 -14 366 23 0 0 chr4 17946255 17946298 -166342364 + (TC)n Simple_repeat Simple_repeat 1 43 0 270 0 0 0 chr4 17946297 17946327 -166342335 + (CA)n Simple_repeat Simple_repeat 1 30 0 * 325 213 250 0 chr4 17947572 17947680 -166340982 - L2 LINE L2 0 3272 3138 189 328 30 0 chr4 17947979 17948046 -166340616 + L2 LINE L2 3189 3257 -15 292 301 32 0 chr4 17948984 17949077 -166339585 + L1MC5 LINE L1 7040 7135 -826 264 154 13 39 chr4 17949808 17949886 -166338776 + GA-rich Low_complexity Low_complexity 4 79 0 2654 208 49 70 chr4 17949932 17950067 -166338595 + L1MC5 LINE L1 7013 7149 -812 1958 118 21 7 chr4 17950067 17950356 -166338306 + AluSp SINE Alu 4 296 -17 2654 208 49 70 chr4 17950356 17951163 -166337499 + L1MC5 LINE L1 7149 7935 -26 299 284 71 31 chr4 17951659 17951786 -166336876 - L2 LINE L2 -1 3271 3140 2651 149 30 62 chr4 17951838 17952335 -166336327 + L1MB3 LINE L1 5691 6171 -12 401 284 44 30 chr4 17952733 17952982 -166335680 + MLT1L LTR MaLR 335 606 -9 522 309 51 90 chr4 17953008 17953596 -166335066 - L2 LINE L2 -268 3004 2420 585 263 38 0 chr4 17953767 17953927 -166334735 + MLT1G1 LTR MaLR 3 168 -427 787 176 0 8 chr4 17953995 17954114 -166334548 + AluJo SINE Alu 2 119 -193 824 177 44 6 chr4 17954424 17954582 -166334080 + AluJo SINE Alu 129 292 -20 877 276 73 51 chr4 17954637 17954760 -166333902 + MLT1G1 LTR MaLR 157 276 -319 4582 107 22 14 chr4 17954760 17955389 -166333273 + MER51A LTR ERV1 1 634 0 877 276 73 51 chr4 17955389 17955675 -166332987 + MLT1G1 LTR MaLR 276 575 -20 309 288 26 26 chr4 17955708 17955816 -166332846 - MIR SINE MIR -106 102 2 21 0 0 0 chr4 17956140 17956161 -166332501 + AT_rich Low_complexity Low_complexity 1 21 0 197 368 13 46 chr4 17956524 17956676 -166331986 + L2 LINE L2 2944 3090 -182 293 313 100 31 chr4 17956723 17956830 -166331832 - L2 LINE L2 -11 3302 3204 1133 203 28 0 chr4 17956830 17957042 -166331620 + MER20 DNA MER1_type 1 218 -1 293 313 100 31 chr4 17957042 17957193 -166331469 - L2 LINE L2 -109 3204 3026 234 0 0 0 chr4 17957440 17957466 -166331196 + (TGAA)n Simple_repeat Simple_repeat 4 29 0 1995 197 73 11 chr4 17957539 17957976 -166330686 - MLT1C LTR MaLR 0 467 4 272 241 170 27 chr4 17958365 17958477 -166330185 + MIR SINE MIR 119 246 -16 183 314 0 0 chr4 17958444 17958495 -166330167 + L2 LINE L2 3259 3309 -4 * 429 280 20 13 chr4 17959750 17959900 -166328762 - LTR67 LTR ERVL -10 547 397 512 270 0 0 chr4 17960347 17960447 -166328215 - MER81 DNA DNA 0 114 15 293 350 0 10 chr4 17960486 17960589 -166328073 - MIR3 SINE MIR -106 102 1 298 363 6 35 chr4 17960609 17960780 -166327882 + MIR SINE MIR 26 191 -71 865 225 6 11 chr4 17961395 17961573 -166327089 - MER3 DNA MER1_type -79 130 1 737 178 5 129 chr4 17962070 17962272 -166326390 + MER3 DNA MER1_type 1 130 -79 746 136 0 42 chr4 17962275 17962393 -166326269 + AluJo SINE Alu 87 199 -113 399 259 140 31 chr4 17962893 17963086 -166325576 - L3 LINE CR1 -11 1566 1353 24 0 0 0 chr4 17963363 17963387 -166325275 + AT_rich Low_complexity Low_complexity 1 24 0 197 243 14 0 chr4 17963613 17963683 -166324979 + (ATGGTG)n Simple_repeat Simple_repeat 4 74 0 530 287 86 24 chr4 17963710 17963919 -166324743 - MIR SINE MIR -28 234 13 210 286 97 45 chr4 17963980 17964134 -166324528 - L2 LINE L2 -668 2646 2485 2366 79 0 10 chr4 17964595 17964898 -166323764 - AluY SINE Alu -11 300 1 539 273 100 45 chr4 17964908 17965128 -166323534 - MIR SINE MIR -5 257 26 186 205 0 0 chr4 17965155 17965194 -166323468 - L2 LINE L2 -5 3308 3270 21 0 0 0 chr4 17965286 17965307 -166323355 + AT_rich Low_complexity Low_complexity 1 21 0 865 185 47 47 chr4 17966285 17966517 -166322145 + MIR SINE MIR 5 236 -26 180 281 115 43 chr4 17967311 17967450 -166321212 + MIR SINE MIR 61 209 -53 711 236 179 5 chr4 17967476 17967688 -166320974 + MIR SINE MIR 12 260 -2 21 0 0 0 chr4 17968093 17968114 -166320548 + AT_rich Low_complexity Low_complexity 1 21 0 1838 183 10 75 chr4 17968471 17968871 -166319791 + MLT1A2 LTR MaLR 1 374 0 233 73 0 24 chr4 17968983 17969024 -166319638 + (CA)n Simple_repeat Simple_repeat 2 41 0 978 277 71 71 chr4 17969914 17970391 -166318271 - MER21B LTR ERV1 -149 714 238 236 299 144 30 chr4 17971003 17971118 -166317544 - MLT1H LTR MaLR -363 186 45 1743 163 3 16 chr4 17971118 17971431 -166317231 + AluJo SINE Alu 1 309 -3 236 299 144 30 chr4 17971431 17971482 -166317180 - MLT1H LTR MaLR -504 45 1 521 301 150 9 chr4 17971482 17971695 -166316967 - MIR SINE MIR -4 258 16 493 222 56 24 chr4 17971863 17971989 -166316673 + MIR SINE MIR 39 168 -94 629 306 52 4 chr4 17972074 17972306 -166316356 - MIR SINE MIR -5 257 15 218 355 0 0 chr4 17972906 17972968 -166315694 - MIR SINE MIR -138 124 63 278 228 190 0 chr4 17973395 17973474 -166315188 + MLT1J2 LTR MaLR 67 160 -290 276 252 47 28 chr4 17973475 17973582 -166315080 + L1MC/D LINE L1 5625 5733 -2075 234 62 0 0 chr4 17973614 17973646 -166315016 + (CATATA)n Simple_repeat Simple_repeat 5 36 0 4258 150 19 3 chr4 17973776 17974449 -166314213 + L1MC1 LINE L1 5630 6313 -20 430 77 0 31 chr4 17974457 17974522 -166314140 + L1MC1 LINE L1 6266 6328 -5 835 92 503 0 chr4 17975063 17975216 -166313446 + MER30 DNA MER1_type 1 230 0 501 306 149 23 chr4 17975318 17975713 -166312949 + L1ME LINE L1 530 974 -5096 860 142 14 0 chr4 17975715 17975863 -166312799 - L1 LINE L1 -838 5308 5159 478 66 0 0 chr4 17975863 17975924 -166312738 + L1PB4 LINE L1 6085 6145 -11 420 262 112 52 chr4 17975953 17976412 -166312250 + L1ME LINE L1 991 1514 -4747 * 554 277 69 84 chr4 17976389 17976424 -166312238 + L1MB4 LINE L1 5351 5385 -729 2601 121 5 27 chr4 17976424 17976796 -166311866 + THE1B LTR MaLR 1 364 0 554 277 69 84 chr4 17976796 17977374 -166311288 + L1MB4 LINE L1 5385 5923 -191 1524 276 74 22 chr4 17976832 17977028 -166311634 + L1ME3 LINE L1 5463 5647 -517 297 0 0 0 chr4 17977028 17977061 -166311601 + (TG)n Simple_repeat Simple_repeat 2 34 0 1524 276 74 22 chr4 17977061 17977510 -166311152 + L1ME3 LINE L1 5647 6163 -1 291 306 0 0 chr4 17977523 17977608 -166311054 + L1MC4a LINE L1 5827 5911 -1897 554 298 63 21 chr4 17978527 17978718 -166309944 - MER20B DNA MER1_type -19 200 2 374 310 71 0 chr4 17978853 17978966 -166309696 - MER63A DNA MER1_type 0 210 90 277 209 93 35 chr4 17979285 17979371 -166309291 - L2 LINE L2 0 3313 3223 379 286 157 44 chr4 17979665 17979913 -166308749 + L3 LINE CR1 1125 1400 -177 242 316 51 0 chr4 17980733 17980812 -166307850 + L2 LINE L2 3141 3223 -49 211 360 20 10 chr4 17981456 17981556 -166307106 + L3 LINE CR1 1430 1530 -47 2440 105 3 6 chr4 17981597 17981929 -166306733 + L1PA8A LINE L1 5797 6127 -4 203 289 119 69 chr4 17982155 17982314 -166306348 - MIR SINE MIR -76 186 20 3956 188 49 23 chr4 17982420 17983201 -166305461 - MLT1A1-int LTR MaLR -934 801 1 1075 194 144 90 chr4 17983201 17983256 -166305406 - MLT1A1 LTR MaLR 0 365 314 2353 68 0 0 chr4 17983256 17983580 -166305082 + AluY SINE Alu 1 324 0 1075 194 144 90 chr4 17983580 17983869 -166304793 - MLT1A1 LTR MaLR -51 314 1 841 35 9 9 chr4 17984050 17984164 -166304498 + (TAGA)n Simple_repeat Simple_repeat 2 115 0 709 293 40 87 chr4 17984779 17985229 -166303433 + MLT1J1 LTR MaLR 18 446 0 191 219 141 0 chr4 17985528 17985592 -166303070 - MIR SINE MIR -94 168 96 234 246 18 0 chr4 17985929 17985986 -166302676 + MIR SINE MIR 92 149 -113 900 194 51 0 chr4 17986110 17986285 -166302377 - MER5A DNA MER1_type 0 189 6 414 277 39 30 chr4 17988275 17988468 -166300194 + MIR SINE MIR 4 200 -62 4343 150 67 21 chr4 17988781 17989528 -166299134 - LTR39 LTR ERV1 0 783 3 205 250 0 38 chr4 17989669 17989749 -166298913 + (TAA)n Simple_repeat Simple_repeat 2 78 0 2484 129 91 5 chr4 17989838 17990232 -166298430 - MSTA LTR MaLR 0 428 1 1560 191 42 42 chr4 17990906 17991315 -166297347 + L1MA8 LINE L1 5881 6289 -2 237 285 167 42 chr4 17991389 17991533 -166297129 + MER5A DNA MER1_type 1 171 -16 242 388 42 18 chr4 17991812 17991977 -166296685 - L2 LINE L2 -189 3083 2915 289 332 27 62 chr4 17992055 17992311 -166296351 - L2 LINE L2 -510 2804 2558 463 226 39 0 chr4 17992322 17992424 -166296238 + MIR SINE MIR 58 163 -99 685 159 7 7 chr4 17994747 17994892 -166293770 + GA-rich Low_complexity Low_complexity 2 146 0 416 249 40 57 chr4 17995309 17995486 -166293176 + MER104 DNA Tc2 7 180 0 409 182 0 0 chr4 17995492 17995558 -166293104 - MSTA LTR MaLR 0 428 363 2223 137 159 2 chr4 17995562 17995970 -166292692 - THE1C-int LTR MaLR -1108 472 1 1782 165 88 20 chr4 17995970 17996321 -166292341 - THE1C LTR MaLR 0 375 1 1551 175 38 0 chr4 17996663 17996954 -166291708 - MER65A LTR ERV1 -16 429 128 2312 166 0 14 chr4 17996954 17997322 -166291340 - L1PA15 LINE L1 0 6165 5803 320 325 3 32 chr4 17997954 17998067 -166290595 - MIR SINE MIR -94 114 4 429 258 306 0 chr4 17998876 17999105 -166289557 + MER5C DNA MER1_type 26 324 0 208 176 0 0 chr4 17999230 17999264 -166289398 + MER5B DNA MER1_type 104 137 -41 * 438 226 57 32 chr4 17999261 17999385 -166289277 + L2 LINE L2 3186 3312 -1 1622 215 24 110 chr4 17999576 18000059 -166288603 + MLT1D LTR MaLR 1 432 -73 1252 173 138 35 chr4 18000059 18000319 -166288343 - AluJo SINE Alu -14 288 2 1622 215 24 110 chr4 18000319 18000388 -166288274 + MLT1D LTR MaLR 432 505 0 194 319 138 35 chr4 18000494 18000726 -166287936 - L2 LINE L2 -337 2977 2722 1434 230 7 0 chr4 18000726 18001035 -166287627 - L1M4 LINE L1 -937 5209 4899 395 192 0 14 chr4 18001055 18001128 -166287534 - MER96B DNA MER1_type? -164 253 182 5126 175 18 7 chr4 18001157 18002037 -166286625 + MER54A LTR ERVL 9 898 -3 565 203 61 25 chr4 18002037 18002197 -166286465 - MER96B DNA MER1_type? -240 177 11 215 324 83 50 chr4 18002250 18002528 -166286134 + L2 LINE L2 2827 3113 -159 239 301 121 36 chr4 18002562 18002728 -166285934 + L2 LINE L2 3125 3304 -9 195 42 0 0 chr4 18003097 18003121 -166285541 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 214 250 88 0 chr4 18003125 18003193 -166285469 - L2 LINE L2 -6 3266 3193 1118 277 117 13 chr4 18003312 18003782 -166284880 + LTR33 LTR ERVL 3 521 0 652 181 29 0 chr4 18004925 18005063 -166283599 - L1MA8 LINE L1 -4 6287 6146 452 124 58 3 chr4 18004992 18005087 -166283575 - L1MA8 LINE L1 -74 6217 6114 337 299 185 0 chr4 18005063 18005220 -166283442 - L3 LINE CR1 -755 822 637 * 327 322 203 28 chr4 18005231 18005585 -166283077 - L3 LINE CR1 -416 1161 746 727 274 66 72 chr4 18005972 18006414 -166282248 + MLT1J LTR MaLR 5 443 -68 704 302 104 53 chr4 18006674 18006734 -166281928 - L2 LINE L2 -1 3312 3256 524 192 218 6 chr4 18006734 18006890 -166281772 + MER53 DNA DNA 1 189 0 704 302 104 53 chr4 18006890 18007794 -166280868 - L2 LINE L2 -57 3256 2299 253 139 0 0 chr4 18007802 18007845 -166280817 - MIR SINE MIR -102 160 118 380 278 7 42 chr4 18008665 18008809 -166279853 + L2 LINE L2 2944 3082 -190 1136 268 87 22 chr4 18009140 18009510 -166279152 - MSTD LTR MaLR 0 396 3 681 261 0 96 chr4 18009617 18009877 -166278785 + MIR SINE MIR 28 262 0 341 212 186 0 chr4 18010248 18010361 -166278301 - MIR SINE MIR -22 240 107 23 0 0 0 chr4 18011348 18011371 -166277291 + AT_rich Low_complexity Low_complexity 1 23 0 2331 101 0 25 chr4 18011570 18011886 -166276776 + AluSx SINE Alu 1 308 -4 441 271 36 88 chr4 18012155 18012406 -166276256 - L2 LINE L2 -1 3312 3075 2600 99 8 8 chr4 18012453 18012806 -166275856 - THE1A LTR MaLR 0 355 3 12323 101 5 1 chr4 18012808 18014381 -166274281 - THE1A-int LTR MaLR 0 1580 1 2458 121 11 11 chr4 18014381 18014736 -166273926 - THE1A LTR MaLR 0 355 1 315 338 82 68 chr4 18014810 18015029 -166273633 - L2 LINE L2 -373 2941 2720 239 329 73 15 chr4 18015174 18015311 -166273351 - MIR SINE MIR -64 144 15 338 302 156 26 chr4 18015378 18015570 -166273092 - MIR SINE MIR -35 227 11 403 306 144 0 chr4 18015924 18016097 -166272565 - MIR SINE MIR -1 261 64 353 298 26 18 chr4 18016188 18016302 -166272360 + L2 LINE L2 3199 3313 0 195 129 0 0 chr4 18016659 18016690 -166271972 + (GAA)n Simple_repeat Simple_repeat 2 32 0 1991 219 72 12 chr4 18017516 18018018 -166270644 - MER74A LTR ERVL -24 534 3 206 69 0 0 chr4 18018146 18018175 -166270487 + L2 LINE L2 3026 3054 -218 299 267 0 0 chr4 18018469 18018529 -166270133 - MER91 DNA MER1_type -3 187 128 828 215 38 11 chr4 18018600 18018786 -166269876 - MLT1C LTR MaLR -90 377 187 753 202 45 20 chr4 18018778 18018976 -166269686 - MLT1C LTR MaLR -231 236 34 * 709 274 108 34 chr4 18019437 18019824 -166268838 + MLT1J2 LTR MaLR 1 416 -34 245 250 33 0 chr4 18020251 18020311 -166268351 - L2 LINE L2 -655 2659 2598 564 260 151 9 chr4 18020375 18020594 -166268068 - MIR SINE MIR -3 259 10 584 262 16 55 chr4 18021022 18021205 -166267457 + MER5B DNA MER1_type 3 178 0 420 345 58 67 chr4 18021270 18021612 -166267050 - L2 LINE L2 -14 3258 2920 298 292 66 7 chr4 18022019 18022156 -166266506 - L2 LINE L2 -69 3244 3100 1432 246 8 45 chr4 18022182 18022580 -166266082 + MLT2C1 LTR ERVL 13 395 -2 270 352 29 0 chr4 18022580 18022685 -166265977 - L2 LINE L2 -228 3085 2978 267 160 20 0 chr4 18022769 18022819 -166265843 - MIR SINE MIR -71 191 141 2211 178 46 17 chr4 18022837 18023248 -166265414 + L1PB4 LINE L1 5722 6144 -12 32 43 0 0 chr4 18023267 18023313 -166265349 + AT_rich Low_complexity Low_complexity 1 46 0 1702 229 30 39 chr4 18023313 18023700 -166264962 - LTR40a LTR ERVL -5 514 130 1527 119 50 5 chr4 18023700 18023919 -166264743 - MER30 DNA MER1_type -1 229 1 1702 229 30 39 chr4 18023919 18023963 -166264699 - LTR40a LTR ERVL -389 130 87 1691 164 17 14 chr4 18023963 18024250 -166264412 + AluJb SINE Alu 1 288 -24 397 138 21 0 chr4 18024277 18024371 -166264291 + (TA)n Simple_repeat Simple_repeat 1 96 0 380 264 0 11 chr4 18024434 18024525 -166264137 - MIR SINE MIR -109 153 64 304 269 58 10 chr4 18024530 18024634 -166264028 + L2 LINE L2 3169 3277 -36 231 328 62 31 chr4 18024691 18024819 -166263843 - L2 LINE L2 -67 3246 3115 249 247 0 118 chr4 18025024 18025109 -166263553 - MIR SINE MIR -78 184 110 451 284 9 0 chr4 18025496 18025605 -166263057 + MIR3 SINE MIR 85 194 -14 348 159 63 0 chr4 18025725 18025788 -166262874 - MER41A LTR ERV1 0 554 488 241 79 95 0 chr4 18025788 18025851 -166262811 + (TA)n Simple_repeat Simple_repeat 1 69 0 636 86 16 54 chr4 18025851 18026037 -166262625 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 422 207 40 6 chr4 18026063 18026237 -166262425 + (TA)n Simple_repeat Simple_repeat 1 180 0 2832 127 8 42 chr4 18026244 18026715 -166261947 - MER41B LTR ERV1 -180 455 1 1811 337 79 30 chr4 18026831 18028113 -166260549 - L2 LINE L2 -445 2869 1525 226 420 9 9 chr4 18028280 18028392 -166260270 - MIR SINE MIR -60 148 37 296 218 7 20 chr4 18028402 18028549 -166260113 + CT-rich Low_complexity Low_complexity 2 146 0 263 300 18 0 chr4 18029446 18029542 -166259120 + MIR SINE MIR 12 112 -96 2057 128 7 3 chr4 18029601 18029899 -166258763 + AluSq SINE Alu 3 301 -12 277 352 9 0 chr4 18030227 18030332 -166258330 - MIR3 SINE MIR -29 179 74 312 224 71 0 chr4 18030966 18031051 -166257611 - L1MC4 LINE L1 -1339 6703 6613 440 107 39 0 chr4 18031051 18031154 -166257508 + (TA)n Simple_repeat Simple_repeat 2 108 0 190 339 32 113 chr4 18031160 18031408 -166257254 - L2 LINE L2 -31 3241 3014 272 246 138 51 chr4 18032261 18032399 -166256263 - L2 LINE L2 -528 2786 2637 1092 176 11 0 chr4 18032656 18032832 -166255830 + MER58A DNA MER1_type 47 224 0 445 247 129 3 chr4 18032936 18033073 -166255589 + MIR SINE MIR 20 168 -67 294 283 18 71 chr4 18033117 18033230 -166255432 + MIR SINE MIR 152 258 -4 608 269 12 23 chr4 18033351 18033522 -166255140 + MER5A DNA MER1_type 21 189 0 1878 134 0 0 chr4 18033709 18033994 -166254668 + AluSc SINE Alu 20 304 0 201 39 0 0 chr4 18034365 18034391 -166254271 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 37169 38 102 3 chr4 18034391 18039964 -166248698 - L1PA3 LINE L1 -13 6142 1 559 184 8 19 chr4 18040822 18041084 -166247578 + CT-rich Low_complexity Low_complexity 1 259 0 473 242 157 33 chr4 18042129 18042282 -166246380 + MIR SINE MIR 21 192 -70 27 29 0 0 chr4 18042668 18042702 -166245960 + AT_rich Low_complexity Low_complexity 1 34 0 495 325 80 14 chr4 18043128 18043340 -166245322 + MIR SINE MIR 2 227 -35 412 243 66 28 chr4 18043983 18044140 -166244522 + MIR SINE MIR 26 195 -62 493 244 154 0 chr4 18044367 18044523 -166244139 - MIR SINE MIR -18 244 65 2115 191 84 14 chr4 18044538 18045026 -166243636 + Charlie1b DNA MER1_type 2 523 0 351 240 13 0 chr4 18045170 18045245 -166243417 - MIR SINE MIR -108 154 79 265 271 24 35 chr4 18045702 18045787 -166242875 + MLT1L LTR MaLR 144 227 -388 367 267 138 53 chr4 18045863 18046110 -166242552 + MLT1J LTR MaLR 244 511 0 1860 268 68 44 chr4 18046175 18047222 -166241440 + L1MEc LINE L1 872 1943 -4453 4112 250 63 37 chr4 18047253 18048864 -166239798 + L1MEc LINE L1 2339 3990 -2225 1340 213 27 30 chr4 18048857 18049224 -166239438 + L1MEc LINE L1 2323 2688 -3527 * 777 223 110 71 chr4 18049305 18049614 -166239048 + MER57A LTR ERV1 83 403 0 1103 213 39 52 chr4 18049614 18051075 -166237587 + L1MEc LINE L1 2713 4309 -1906 1715 174 59 0 chr4 18051077 18051364 -166237298 + AluJo SINE Alu 1 304 -8 28 0 0 0 chr4 18051394 18051422 -166237240 + AT_rich Low_complexity Low_complexity 1 28 0 2453 82 0 3 chr4 18051495 18051799 -166236863 + AluY SINE Alu 1 303 -8 271 319 59 15 chr4 18051819 18051954 -166236708 + MIR SINE MIR 116 256 -6 237 267 33 0 chr4 18052411 18052471 -166236191 + GA-rich Low_complexity Low_complexity 3 64 0 2166 178 56 22 chr4 18052880 18053329 -166235333 + MLT1C LTR MaLR 4 467 0 396 310 202 5 chr4 18053588 18053791 -166234871 + MIR SINE MIR 13 255 -7 2197 113 0 3 chr4 18053915 18054208 -166234454 - AluSc SINE Alu -17 292 1 1054 225 9 18 chr4 18054936 18055154 -166233508 + MER20 DNA MER1_type 3 218 -1 492 214 55 75 chr4 18055211 18055416 -166233246 + MIR SINE MIR 66 262 0 220 333 10 10 chr4 18056020 18056119 -166232543 - MIR SINE MIR -30 232 134 216 0 0 0 chr4 18056359 18056383 -166232279 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 297 302 56 40 chr4 18056535 18056661 -166232001 - MIR SINE MIR -115 147 20 400 279 19 0 chr4 18057872 18057976 -166230686 - MER81 DNA DNA -4 110 5 2889 72 17 0 chr4 18057976 18058325 -166230337 + THE1A LTR MaLR 1 355 0 12338 103 1 5 chr4 18058325 18059912 -166228750 + THE1A-int LTR MaLR 1 1580 0 2683 96 3 25 chr4 18059912 18060275 -166228387 + THE1A LTR MaLR 1 355 0 665 247 64 30 chr4 18060975 18061242 -166227420 - L1MC5 LINE L1 -26 7935 7660 2564 148 0 0 chr4 18061252 18061616 -166227046 + THE1B LTR MaLR 1 364 0 9944 122 36 39 chr4 18061616 18063194 -166225468 + THE1B-int LTR MaLR 1 1574 -6 2975 88 3 3 chr4 18063199 18063563 -166225099 + THE1B LTR MaLR 1 364 0 740 225 21 38 chr4 18063625 18063861 -166224801 - L1MC5 LINE L1 -427 7534 7303 1559 114 17 8 chr4 18064006 18064243 -166224419 - Tigger5 DNA MER2_type 0 2323 2085 15046 201 13 19 chr4 18064282 18065657 -166223005 + L1PB1 LINE L1 1990 3372 -3800 2248 87 7 13 chr4 18065657 18065955 -166222707 + AluY SINE Alu 1 296 -15 15046 201 13 19 chr4 18065955 18069058 -166219604 + L1PB1 LINE L1 3372 6492 -680 207 0 0 0 chr4 18069058 18069081 -166219581 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 15046 201 13 19 chr4 18069081 18069378 -166219284 + L1PB1 LINE L1 6492 6814 -358 231 114 0 0 chr4 18069378 18069413 -166219249 + (CA)n Simple_repeat Simple_repeat 2 36 0 15046 201 13 19 chr4 18069413 18069683 -166218979 + L1PB1 LINE L1 6814 7084 -88 848 236 27 106 chr4 18069681 18070011 -166218651 - L1MC5 LINE L1 -1047 6914 6611 * 732 262 80 0 chr4 18070442 18070679 -166217983 - MIR SINE MIR -2 260 5 593 64 28 18 chr4 18070933 18071042 -166217620 + (TAGA)n Simple_repeat Simple_repeat 1 110 0 589 329 66 25 chr4 18073046 18073289 -166215373 - L2 LINE L2 -113 3159 2907 326 352 0 0 chr4 18073283 18073388 -166215274 - MIR SINE MIR -110 152 48 * 253 259 0 0 chr4 18073910 18073964 -166214698 + CT-rich Low_complexity Low_complexity 4 57 0 191 319 112 47 chr4 18074984 18075216 -166213446 - L2 LINE L2 -212 3060 2814 284 298 102 42 chr4 18075732 18075932 -166212730 - MIR SINE MIR -50 212 3 180 0 0 0 chr4 18076780 18076800 -166211862 + (TCTCCC)n Simple_repeat Simple_repeat 2 21 0 8406 29 0 197 chr4 18076800 18078257 -166210405 + SVA Other Other 1 1170 -216 297 0 0 0 chr4 18078257 18078290 -166210372 + (A)n Simple_repeat Simple_repeat 1 33 0 271 371 103 0 chr4 18078545 18078758 -166209904 + MIR SINE MIR 22 256 -6 245 343 0 0 chr4 18078872 18078945 -166209717 - L2 LINE L2 -14 3299 3227 203 310 17 17 chr4 18079077 18079135 -166209527 + L2 LINE L2 3163 3220 -52 280 307 114 0 chr4 18080005 18080119 -166208543 - MIR SINE MIR -40 222 96 11439 138 55 10 chr4 18080148 18082241 -166206421 + L1PB1 LINE L1 1130 3319 -3543 6827 172 8 2 chr4 18082254 18084544 -166204118 + L1PB1 LINE L1 4560 6865 -2 315 330 33 33 chr4 18084610 18084825 -166203837 + L1ME LINE L1 4887 5101 -1045 207 253 24 12 chr4 18084864 18084947 -166203715 + (TA)n Simple_repeat Simple_repeat 2 85 0 663 259 52 15 chr4 18084970 18085256 -166203406 + L1ME LINE L1 5215 5511 -653 212 366 73 66 chr4 18085302 18085619 -166203043 + L2 LINE L2 2927 3245 -27 189 283 100 76 chr4 18086238 18086414 -166202248 + MIR3 SINE MIR 10 190 -68 543 332 35 0 chr4 18086457 18086659 -166202003 - MIR SINE MIR -5 257 49 219 364 76 61 chr4 18086742 18086940 -166201722 + L2 LINE L2 3072 3272 0 1007 114 6 0 chr4 18086978 18087144 -166201518 + (TGGA)n Simple_repeat Simple_repeat 3 169 0 2033 230 18 67 chr4 18087475 18088045 -166200617 - MER44D DNA MER2_type -8 597 1 372 248 167 17 chr4 18088364 18088648 -166200014 + LTR50 LTR ERVL 348 519 -4 525 285 70 30 chr4 18088653 18088853 -166199809 - MIR SINE MIR -25 237 30 288 0 0 0 chr4 18089514 18089546 -166199116 + (TG)n Simple_repeat Simple_repeat 2 33 0 210 231 0 19 chr4 18090141 18090193 -166198469 + MIR SINE MIR 100 150 -112 263 372 39 17 chr4 18090242 18090422 -166198240 - MIR SINE MIR -32 230 47 2259 267 111 28 chr4 18091957 18092878 -166195784 + L2 LINE L2 679 1675 -1639 1259 55 103 0 chr4 18092918 18093083 -166195579 + THE1B LTR MaLR 1 182 -182 22 0 0 0 chr4 18093087 18093109 -166195553 + AT_rich Low_complexity Low_complexity 1 22 0 29678 118 23 57 chr4 18093117 18099134 -166189528 + L1PA8 LINE L1 12 5756 -522 2397 88 0 0 chr4 18099134 18099429 -166189233 + AluY SINE Alu 1 295 -16 29678 118 23 57 chr4 18099429 18099935 -166188727 + L1PA8 LINE L1 5756 6278 0 1067 113 54 48 chr4 18099936 18100122 -166188540 + THE1B LTR MaLR 178 364 0 372 158 158 0 chr4 18100129 18100211 -166188451 - AluSg/x SINE Alu 0 302 208 3026 280 84 31 chr4 18100212 18101702 -166186960 + L2 LINE L2 1740 3313 0 1085 161 0 0 chr4 18101993 18102161 -166186501 + AluJb SINE Alu 134 301 -11 805 289 31 0 chr4 18102729 18102957 -166185705 + MIR SINE MIR 15 249 -13 815 226 38 77 chr4 18103019 18103375 -166185287 + MLT1H LTR MaLR 33 330 -212 641 178 134 45 chr4 18103391 18103593 -166185069 + MER20B DNA MER1_type 537 756 -27 258 32 0 0 chr4 18103813 18103839 -166184823 + (TG)n Simple_repeat Simple_repeat 1 57 0 258 32 0 0 chr4 18103839 18103870 -166184792 + (TG)n Simple_repeat Simple_repeat 2 32 0 326 240 173 39 chr4 18104364 18104571 -166184091 - MIR SINE MIR -6 256 15 554 241 48 0 chr4 18104605 18104750 -166183912 + MIR SINE MIR 86 237 -25 351 222 19 56 chr4 18105130 18105238 -166183424 - MIR3 SINE MIR -17 191 88 678 296 63 67 chr4 18105554 18105618 -166183044 + L2 LINE L2 2704 2767 -505 2544 48 0 6 chr4 18105618 18105930 -166182732 + AluY SINE Alu 1 310 -1 678 296 63 67 chr4 18105930 18106441 -166182221 + L2 LINE L2 2767 3272 0 295 208 49 132 chr4 18106953 18107097 -166181565 - L2 LINE L2 0 3313 3182 2094 155 40 28 chr4 18107317 18107863 -166180799 - MLT2A2 LTR ERVL 0 554 1 487 266 39 0 chr4 18107921 18108049 -166180613 + MIR3 SINE MIR 8 140 -68 668 335 88 29 chr4 18108054 18108472 -166180190 + LTR16B LTR ERVL 1 443 -21 1761 155 16 47 chr4 18108764 18109086 -166179576 + AluJb SINE Alu 1 312 0 3589 123 2 6 chr4 18109121 18109664 -166178998 - L1PA16 LINE L1 -9 6157 5617 275 300 80 10 chr4 18112062 18112162 -166176500 + L2 LINE L2 3202 3308 -5 201 74 0 0 chr4 18112487 18112514 -166176148 + (AACTG)n Simple_repeat Simple_repeat 1 27 0 29 28 0 0 chr4 18112994 18113030 -166175632 + AT_rich Low_complexity Low_complexity 1 36 0 192 291 97 30 chr4 18113172 18113306 -166175356 - MIR SINE MIR -50 212 70 195 250 53 26 chr4 18113366 18113442 -166175220 - MIR SINE MIR -42 220 143 4561 195 44 67 chr4 18113499 18114270 -166174392 + L1MD1 LINE L1 4421 5208 -1034 250 132 0 0 chr4 18114270 18114308 -166174354 - 5S rRNA rRNA -81 40 3 3065 82 29 13 chr4 18114308 18114762 -166173900 + L1MA1 LINE L1 5842 6302 0 4561 195 44 67 chr4 18114762 18115828 -166172834 + L1MD1 LINE L1 5206 6242 0 536 319 85 35 chr4 18116318 18116497 -166172165 + LTR16A LTR ERVL 20 189 -261 1530 214 87 16 chr4 18116497 18116867 -166171795 - MSTD LTR MaLR 0 396 1 536 319 85 35 chr4 18116867 18117088 -166171574 + LTR16A LTR ERVL 189 440 -10 1691 58 4 46 chr4 18117126 18117367 -166171295 - L1PA10 LINE L1 0 6168 5938 1162 333 39 34 chr4 18117383 18117996 -166170666 + HERV16 LTR ERVL 40 655 -4341 1748 256 30 7 chr4 18118070 18118507 -166170155 + MER21B LTR ERV1 98 544 -319 1217 133 0 0 chr4 18118684 18118857 -166169805 + AluJb SINE Alu 1 173 -139 1456 168 0 0 chr4 18118860 18119092 -166169570 + AluJb SINE Alu 74 305 -7 207 310 130 10 chr4 18119781 18119881 -166168781 + MIR SINE MIR 34 145 -63 342 301 183 18 chr4 18121350 18121569 -166167093 - MIR SINE MIR -3 259 5 357 283 21 14 chr4 18122201 18122346 -166166316 - MER117 DNA MER1_type -49 148 3 365 310 54 8 chr4 18122875 18123039 -166165623 - MIR SINE MIR -57 151 8 210 238 36 83 chr4 18123873 18123957 -166164705 - L2 LINE L2 -800 2514 2435 1582 198 105 5 chr4 18125349 18125758 -166162904 - MLT1C LTR MaLR -12 455 6 538 272 15 67 chr4 18126202 18126248 -166162414 - MIR SINE MIR 0 262 215 1272 179 27 62 chr4 18126248 18126584 -166162078 - MER33 DNA MER1_type 0 324 1 538 272 15 67 chr4 18126584 18126732 -166161930 - MIR SINE MIR -47 215 78 252 59 0 0 chr4 18126886 18126920 -166161742 + (CA)n Simple_repeat Simple_repeat 2 35 0 256 313 96 60 chr4 18126941 18127107 -166161555 - MER5A DNA MER1_type -6 183 12 * 342 277 143 9 chr4 18127096 18127208 -166161454 - MER5B DNA MER1_type -5 173 47 1730 203 158 49 chr4 18127344 18127757 -166160905 - MER76 LTR ERV -34 654 156 1994 110 0 7 chr4 18127757 18128062 -166160600 - AluSc SINE Alu 0 303 1 1730 203 158 49 chr4 18128062 18128237 -166160425 - MER76 LTR ERV -532 156 1 459 288 53 43 chr4 18128546 18128827 -166159835 - MLT1K LTR MaLR -106 482 199 1742 163 49 0 chr4 18129087 18129375 -166159287 + AluSx SINE Alu 1 302 -10 273 247 21 52 chr4 18129527 18129624 -166159038 - MIR SINE MIR -128 134 41 1872 52 8 24 chr4 18130103 18130351 -166158311 + L1PA6 LINE L1 5907 6150 -4 412 299 37 30 chr4 18130582 18130746 -166157916 + MIR SINE MIR 3 167 -95 377 250 55 23 chr4 18131116 18131229 -166157433 - MIR3 SINE MIR -1 207 88 2358 97 3 0 chr4 18131229 18131539 -166157123 - AluY SINE Alu 0 311 1 377 250 55 23 chr4 18131539 18131553 -166157109 - MIR3 SINE MIR -120 88 76 1968 192 27 64 chr4 18132350 18132834 -166155828 + MLT1C LTR MaLR 1 466 -1 572 316 23 35 chr4 18133801 18134057 -166154605 - MIR SINE MIR -8 254 2 953 198 39 0 chr4 18134272 18134581 -166154081 + L1MA9 LINE L1 6072 6389 0 283 263 13 13 chr4 18134505 18134615 -166154047 + GA-rich Low_complexity Low_complexity 4 113 0 279 264 11 0 chr4 18135015 18135102 -166153560 + L1ME4a LINE L1 5762 5849 -272 1000 101 5 139 chr4 18135103 18135312 -166153350 - LTR9 LTR ERV1 0 612 432 1432 99 0 0 chr4 18135316 18135498 -166153164 + AluY SINE Alu 1 182 -129 2981 101 16 0 chr4 18135536 18135970 -166152692 - LTR9 LTR ERV1 -171 441 1 645 221 61 9 chr4 18136003 18136234 -166152428 + L1ME4a LINE L1 5879 6121 0 226 259 35 47 chr4 18136321 18136406 -166152256 + MIR3 SINE MIR 97 180 -28 396 217 163 90 chr4 18137469 18137640 -166151022 + MIR SINE MIR 3 184 -58 10369 194 20 3 chr4 18137642 18140567 -166148095 + L1PA13 LINE L1 3220 6163 0 1681 220 25 8 chr4 18140666 18141025 -166147637 + MLT1A1 LTR MaLR 1 365 0 733 269 33 5 chr4 18141119 18141378 -166147284 + L1ME3 LINE L1 5709 5978 -184 481 185 0 0 chr4 18141397 18141478 -166147184 - MER81 DNA DNA -15 99 19 233 188 43 103 chr4 18141531 18141648 -166147014 + L1ME3 LINE L1 5994 6103 -59 509 184 48 8 chr4 18142818 18142943 -166145719 - L1ME2 LINE L1 -9 6155 6026 1676 236 34 9 chr4 18143554 18144021 -166144641 - L1ME2 LINE L1 -1 6163 5685 345 315 58 12 chr4 18144017 18144274 -166144388 + L1ME4a LINE L1 5691 5959 -162 * 384 337 86 7 chr4 18144585 18144876 -166143786 + L2 LINE L2 2546 2859 -455 287 380 25 4 chr4 18144918 18145144 -166143518 + L1MA7 LINE L1 374 628 -4722 13552 171 25 32 chr4 18145263 18148378 -166140284 + L1PA13 LINE L1 2596 5731 -1134 1912 82 0 4 chr4 18148378 18148623 -166140039 + AluSq SINE Alu 63 306 -7 13552 171 25 32 chr4 18148623 18148708 -166139954 + L1PA13 LINE L1 5731 5815 -1050 1405 180 149 7 chr4 18148708 18149003 -166139659 + MER1B DNA MER1_type 1 337 0 13552 171 25 32 chr4 18149003 18150100 -166138562 + L1PA13 LINE L1 5815 6863 -2 4292 162 16 12 chr4 18150101 18150923 -166137739 + L1MA4 LINE L1 5463 6287 -13 2366 279 54 39 chr4 18151155 18152667 -166135995 + L1MA7 LINE L1 827 2005 -4345 205 310 17 17 chr4 18153225 18153283 -166135379 - L2 LINE L2 -52 3220 3163 253 343 0 0 chr4 18153415 18153488 -166135174 + L2 LINE L2 3227 3299 -14 307 371 103 0 chr4 18153602 18153815 -166134847 - MIR SINE MIR -6 256 22 288 0 0 0 chr4 18154070 18154102 -166134560 + (T)n Simple_repeat Simple_repeat 1 32 0 2230 116 0 0 chr4 18154102 18154403 -166134259 - SVA Other Other -216 1170 870 279 0 0 0 chr4 18154597 18154628 -166134034 + (T)n Simple_repeat Simple_repeat 1 31 0 4582 63 8 135 chr4 18154628 18155765 -166132897 - SVA Other Other -683 1170 433 3611 239 48 11 chr4 18155865 18156905 -166131757 + L1MA7 LINE L1 2081 3186 -3164 2211 84 3 20 chr4 18156905 18157202 -166131460 + AluSp SINE Alu 21 312 -1 3611 239 48 11 chr4 18157202 18157497 -166131165 + L1MA7 LINE L1 3186 3469 -2881 5298 164 16 24 chr4 18157614 18157923 -166130739 + L1MA7 LINE L1 5171 5481 -1014 2078 152 45 31 chr4 18157923 18158279 -166130383 - THE1B LTR MaLR 0 364 4 5298 164 16 24 chr4 18158279 18159292 -166129370 + L1MA7 LINE L1 5481 6493 -2 22 35 0 0 chr4 18159293 18159322 -166129340 + AT_rich Low_complexity Low_complexity 1 29 0 1672 26 11 11 chr4 18159494 18159685 -166128977 - L1PA7 LINE L1 0 6154 5964 191 305 66 71 chr4 18160023 18160220 -166128442 - L3 LINE CR1 -263 1314 1119 235 386 76 0 chr4 18160673 18160805 -166127857 + MER117 DNA MER1_type 5 146 -51 264 331 42 49 chr4 18161102 18161244 -166127418 - L2 LINE L2 -1 3312 3172 473 264 72 30 chr4 18161942 18162169 -166126493 - MIR SINE MIR -15 247 14 877 291 45 45 chr4 18162506 18162904 -166125758 + MLT1L LTR MaLR 7 404 -211 25 0 0 0 chr4 18163149 18163174 -166125488 + AT_rich Low_complexity Low_complexity 1 25 0 1132 226 9 18 chr4 18163341 18163567 -166125095 + MER58A DNA MER1_type 1 224 0 2038 202 41 137 chr4 18163591 18163766 -166124896 + MER89 LTR ERV1 6 196 -363 610 99 0 12 chr4 18163766 18163847 -166124815 + MADE1 DNA Mariner 1 80 0 2038 202 41 137 chr4 18163847 18164284 -166124378 + MER89 LTR ERV1 196 559 0 260 342 13 0 chr4 18164284 18164360 -166124302 + MIR SINE MIR 30 106 -102 270 333 51 8 chr4 18165196 18165313 -166123349 + MIR SINE MIR 16 137 -71 618 148 22 0 chr4 18165336 18165452 -166123210 + L1PB4 LINE L1 5654 5777 -378 320 244 17 28 chr4 18165464 18165644 -166123018 + (TATG)n Simple_repeat Simple_repeat 1 178 0 290 266 0 25 chr4 18165645 18165724 -166122938 + (TATATG)n Simple_repeat Simple_repeat 6 82 0 201 268 18 0 chr4 18165903 18165959 -166122703 + (CATATA)n Simple_repeat Simple_repeat 2 58 0 2338 148 11 3 chr4 18165960 18166317 -166122345 + L1PB4 LINE L1 5789 6148 -8 581 252 40 122 chr4 18166772 18167050 -166121612 + MIR SINE MIR 8 262 0 269 308 137 0 chr4 18167052 18167169 -166121493 - MIR SINE MIR -29 233 101 1299 200 51 34 chr4 18168628 18169138 -166119524 - MLT1C LTR MaLR 0 467 1 5098 212 15 4 chr4 18169562 18170820 -166117842 - L1PA15-16 LINE L1 -3569 3280 2008 334 310 20 0 chr4 18170860 18170960 -166117702 + MIR SINE MIR 57 158 -104 1960 176 17 62 chr4 18171017 18171421 -166117241 + MLT1B LTR MaLR 3 388 -2 1178 223 44 16 chr4 18171476 18171817 -166116845 + MER33 DNA MER1_type 1 324 0 376 274 173 44 chr4 18171928 18172127 -166116535 + MIR SINE MIR 8 241 -21 1979 184 25 6 chr4 18172127 18172485 -166116177 + MLT1A1 LTR MaLR 1 365 0 376 274 173 44 chr4 18172485 18172511 -166116151 + MIR SINE MIR 241 262 0 2401 73 0 7 chr4 18172580 18172883 -166115779 + AluY SINE Alu 1 301 -10 186 366 42 21 chr4 18173044 18173186 -166115476 + L2 LINE L2 2917 3061 -211 407 346 15 15 chr4 18173936 18174072 -166114590 + MIR SINE MIR 10 145 -117 21 36 0 0 chr4 18174074 18174102 -166114560 + AT_rich Low_complexity Low_complexity 1 28 0 1876 199 16 40 chr4 18174194 18174566 -166114096 + MLT1A1 LTR MaLR 1 363 -2 4101 198 36 31 chr4 18174566 18175406 -166113256 + MLT1A1-int LTR MaLR 2 845 -890 3260 111 10 49 chr4 18175474 18175987 -166112675 - LTR3b LTR ERVK -7 493 1 2216 222 90 39 chr4 18175993 18176634 -166112028 + MLT1A1-int LTR MaLR 880 1727 -8 2293 176 11 8 chr4 18176641 18177005 -166111657 + MLT1A1 LTR MaLR 1 365 0 5994 63 1 9 chr4 18177096 18177876 -166110786 + L1PA3 LINE L1 3 776 -5370 21902 27 1 2 chr4 18177883 18181127 -166107535 + L1PA3 LINE L1 2919 6165 0 184 359 14 35 chr4 18181200 18181345 -166107317 + MIR SINE MIR 76 217 -45 193 244 103 0 chr4 18181780 18181858 -166106804 + L2 LINE L2 3001 3086 -227 338 156 78 11 chr4 18181913 18182003 -166106659 + MIR SINE MIR 166 261 -1 193 220 266 18 chr4 18182108 18182217 -166106445 + L2 LINE L2 3137 3272 0 183 265 0 0 chr4 18182440 18182489 -166106173 - L2 LINE L2 -2 3311 3263 227 265 0 0 chr4 18183174 18183223 -166105439 + (CA)n Simple_repeat Simple_repeat 2 50 0 438 239 110 0 chr4 18183247 18183356 -166105306 + MIR3 SINE MIR 82 202 -6 1692 179 0 10 chr4 18183471 18183762 -166104900 - AluJb SINE Alu -24 288 1 871 276 93 21 chr4 18183764 18183855 -166104807 + MER113 DNA MER1_type? 11 94 -427 2219 68 0 0 chr4 18183855 18184120 -166104542 - AluY SINE Alu -17 294 30 871 276 93 21 chr4 18184120 18184460 -166104202 + MER113 DNA MER1_type? 94 473 -48 411 307 0 0 chr4 18185011 18185112 -166103550 + MIR SINE MIR 43 143 -119 189 74 0 0 chr4 18185270 18185297 -166103365 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 299 200 85 62 chr4 18186027 18186157 -166102505 - L1MC4a LINE L1 -1829 5979 5847 569 262 92 71 chr4 18187048 18187342 -166101320 + LTR16C LTR ERVL 85 384 -107 330 238 86 29 chr4 18187371 18187476 -166101186 - LTR41 LTR ERVL -6 767 657 272 262 47 54 chr4 18188043 18188192 -166100470 - LTR41 LTR ERVL -605 168 21 21 36 0 0 chr4 18188193 18188221 -166100441 + AT_rich Low_complexity Low_complexity 1 28 0 370 194 28 0 chr4 18188221 18188293 -166100369 + LTR16C LTR ERVL 418 491 0 3276 122 28 35 chr4 18188345 18188919 -166099743 - MER4B LTR ERV1 -36 574 5 351 314 6 57 chr4 18188937 18189112 -166099550 + MIR SINE MIR 81 246 -16 613 285 149 9 chr4 18189438 18189659 -166099003 - MIR SINE MIR -1 261 10 222 323 48 48 chr4 18189685 18189809 -166098853 + MIR3 SINE MIR 36 159 -49 1474 261 106 17 chr4 18189939 18190457 -166098205 + MER20B DNA MER1_type 198 761 -22 389 306 9 0 chr4 18190563 18190674 -166097988 - L2 LINE L2 0 3313 3202 1807 202 33 22 chr4 18190699 18191060 -166097602 - MLT1A1 LTR MaLR 0 365 1 2232 208 27 37 chr4 18191067 18191576 -166097086 + L1ME3 LINE L1 5589 6094 -68 2069 145 0 3 chr4 18191576 18191873 -166096789 + AluSq SINE Alu 1 296 -17 2232 208 27 37 chr4 18191873 18191910 -166096752 + L1ME3 LINE L1 6094 6130 -32 288 276 31 71 chr4 18191998 18192125 -166096537 + MIR SINE MIR 28 149 -113 2516 171 16 57 chr4 18192125 18192432 -166096230 - MER70A LTR ERVL 0 472 191 1889 68 12 28 chr4 18192432 18192682 -166095980 - L1PA7 LINE L1 -2 6152 5907 2516 171 16 57 chr4 18192682 18192866 -166095796 - MER70A LTR ERVL -281 191 1 561 249 94 22 chr4 18193034 18193215 -166095447 - MER117 DNA MER1_type 0 197 4 2372 71 0 7 chr4 18193385 18193681 -166094981 + AluY SINE Alu 9 302 -9 333 0 0 0 chr4 18194698 18194735 -166093927 + (CA)n Simple_repeat Simple_repeat 2 38 0 194 328 0 0 chr4 18195335 18195393 -166093269 - L3 LINE CR1 -4 1573 1516 290 247 0 0 chr4 18195403 18195484 -166093178 + MER113 DNA MER1_type? 43 123 -398 239 284 45 0 chr4 18195595 18195662 -166093000 + MER113 DNA MER1_type? 452 521 0 2109 128 3 3 chr4 18195867 18196165 -166092497 + AluSx SINE Alu 1 298 -14 225 299 17 86 chr4 18196173 18196290 -166092372 - MIR3 SINE MIR -49 159 51 356 313 133 26 chr4 18196986 18197181 -166091481 + L3 LINE CR1 1360 1575 -2 593 231 16 0 chr4 18197323 18197444 -166091218 - MER58A DNA MER1_type 0 162 40 1237 186 0 14 chr4 18197761 18197982 -166090680 + AluJb SINE Alu 85 302 -10 257 254 56 0 chr4 18199372 18199443 -166089219 + MIR SINE MIR 84 158 -104 527 303 23 17 chr4 18199888 18200063 -166088599 + MER5B DNA MER1_type 1 176 -2 183 186 0 0 chr4 18200075 18200118 -166088544 + GA-rich Low_complexity Low_complexity 2 44 0 253 368 9 9 chr4 18200120 18200226 -166088436 - MIR SINE MIR -120 142 37 216 122 0 0 chr4 18200652 18200693 -166087969 + (GA)n Simple_repeat Simple_repeat 2 42 0 2462 132 20 39 chr4 18200786 18201194 -166087468 + MER57A LTR ERV1 1 400 -3 353 225 50 42 chr4 18201370 18201490 -166087172 - MIR SINE MIR -95 167 47 590 174 66 0 chr4 18202206 18202327 -166086335 + MER63 DNA MER1_type 12 766 -296 225 242 194 0 chr4 18202324 18202386 -166086276 + MER63 DNA MER1_type 984 1057 -3 * 2184 103 0 3 chr4 18203386 18203676 -166084986 + AluSg SINE Alu 6 294 -16 214 175 0 0 chr4 18203793 18203833 -166084829 + MIR SINE MIR 152 191 -71 1041 293 119 20 chr4 18203911 18204440 -166084222 + L2 LINE L2 2717 3308 -5 408 297 63 11 chr4 18204448 18204623 -166084039 - MIR SINE MIR -70 192 9 495 78 0 26 chr4 18204948 18205025 -166083637 - MADE1 DNA Mariner 0 80 6 23 33 0 0 chr4 18205643 18205673 -166082989 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr4 18207033 18207059 -166081603 + AT_rich Low_complexity Low_complexity 1 26 0 192 40 0 0 chr4 18207226 18207251 -166081411 + (CA)n Simple_repeat Simple_repeat 2 26 0 348 215 46 0 chr4 18207588 18207653 -166081009 - MER58A DNA MER1_type -31 76 9 235 320 109 34 chr4 18207658 18207833 -166080829 - MER5A DNA MER1_type 0 189 2 1229 197 105 4 chr4 18208354 18208593 -166080069 + Tigger7 DNA MER2_type 3 265 -2222 2145 132 3 0 chr4 18208631 18208935 -166079727 - AluSx SINE Alu -7 305 1 403 169 0 0 chr4 18208953 18209018 -166079644 + Tigger7 DNA MER2_type 2426 2490 -1 296 267 69 10 chr4 18209591 18209692 -166078970 + Charlie2a DNA MER1_type 445 551 -2311 1921 142 0 26 chr4 18209866 18210169 -166078493 + AluSx SINE Alu 1 295 -17 2370 77 0 7 chr4 18210585 18210884 -166077778 + AluY SINE Alu 1 297 -14 3595 216 98 68 chr4 18211173 18211940 -166076722 + Charlie2a DNA MER1_type 572 1315 -1547 2518 62 0 7 chr4 18211940 18212249 -166076413 - AluY SINE Alu -4 307 1 3595 216 98 68 chr4 18212249 18212320 -166076342 + Charlie2a DNA MER1_type 1315 1382 -1480 1083 214 153 0 chr4 18212320 18212582 -166076080 - AluJo SINE Alu 0 302 1 3595 216 98 68 chr4 18212582 18212802 -166075860 + Charlie2a DNA MER1_type 1382 1594 -1268 1761 155 10 7 chr4 18212802 18213099 -166075563 - AluJo SINE Alu -12 300 3 3595 216 98 68 chr4 18213099 18213785 -166074877 + Charlie2a DNA MER1_type 1594 2370 -492 720 267 11 6 chr4 18213791 18213971 -166074691 + MIR SINE MIR 72 252 -10 322 263 46 65 chr4 18214695 18214916 -166073746 + L1M2 LINE L1 901 1142 -5707 181 293 12 85 chr4 18215176 18215258 -166073404 - L2 LINE L2 -25 3247 3172 268 275 0 25 chr4 18215823 18215903 -166072759 - L2 LINE L2 -1220 2094 2017 2105 78 92 0 chr4 18216003 18216285 -166072377 - AluSc SINE Alu -1 308 1 787 146 34 28 chr4 18217147 18217325 -166071337 + Charlie2 DNA MER1_type 2035 2213 -649 1693 141 0 8 chr4 18217670 18217926 -166070736 + AluSx SINE Alu 40 293 -19 1009 266 83 76 chr4 18219041 18219859 -166068803 - L2 LINE L2 0 3313 2428 228 173 0 19 chr4 18219886 18219938 -166068724 + L1MC4 LINE L1 6660 6710 -1332 1958 163 7 0 chr4 18220187 18220488 -166068174 + AluSx SINE Alu 1 303 -9 1152 180 18 31 chr4 18221251 18221473 -166067189 - MER20 DNA MER1_type 0 219 1 182 261 0 76 chr4 18221871 18221963 -166066699 - L3 LINE CR1 -662 915 831 180 246 18 53 chr4 18222731 18222788 -166065874 - MIR SINE MIR -90 172 118 1507 176 67 7 chr4 18223027 18223311 -166065351 - AluJo SINE Alu -11 301 1 228 242 21 63 chr4 18223739 18223834 -166064828 + L3b LINE CR1 1103 1193 -390 234 342 0 0 chr4 18224318 18224397 -166064265 + L3b LINE CR1 1384 1462 -121 448 163 0 0 chr4 18224575 18224655 -166064007 - MER116 DNA Mariner 0 80 1 2341 93 3 10 chr4 18225076 18225387 -166063275 - AluSc SINE Alu 0 309 1 302 288 131 74 chr4 18225913 18226264 -166062398 + L2 LINE L2 2943 3313 0 200 149 21 64 chr4 18227970 18228017 -166060645 + GA-rich Low_complexity Low_complexity 4 48 0 23 86 0 0 chr4 18228466 18228524 -166060138 + AT_rich Low_complexity Low_complexity 1 58 0 258 357 23 23 chr4 18228920 18229050 -166059612 + MIR SINE MIR 1 133 -75 23 0 0 0 chr4 18229070 18229093 -166059569 + AT_rich Low_complexity Low_complexity 1 23 0 1740 251 65 17 chr4 18229181 18229713 -166058949 - MER77 LTR ERV1 -4 601 58 203 260 0 0 chr4 18229748 18229798 -166058864 - L2 LINE L2 -9 3263 3214 * 575 255 210 0 chr4 18229764 18229964 -166058698 - MIR SINE MIR -19 243 2 954 259 43 31 chr4 18230670 18231021 -166057641 + MER93b LTR ERV1 19 373 0 1727 161 79 0 chr4 18231611 18231941 -166056721 - MER46B DNA MER2_type -5 231 1 230 281 0 0 chr4 18232752 18232809 -166055853 + (TA)n Simple_repeat Simple_repeat 1 57 0 2146 126 7 0 chr4 18234754 18235064 -166053598 + AluSq SINE Alu 1 312 -1 250 302 0 9 chr4 18235682 18235798 -166052864 - L1ME LINE L1 -299 5822 5708 214 293 40 71 chr4 18243758 18243857 -166044805 - MIR SINE MIR -80 182 87 212 209 0 0 chr4 18243885 18243928 -166044734 + MIR SINE MIR 110 152 -110 209 288 213 0 chr4 18244373 18244453 -166044209 - MIR3 SINE MIR -1 207 111 795 335 103 22 chr4 18245416 18245825 -166042837 + L2 LINE L2 2403 2844 -470 298 327 50 20 chr4 18245931 18246130 -166042532 - L2 LINE L2 -223 3049 2845 1412 180 55 59 chr4 18247022 18247416 -166041246 - Charlie1 DNA MER1_type 0 2761 2368 2109 107 0 4 chr4 18247416 18247728 -166040934 - AluSc SINE Alu 0 309 10 1412 180 55 59 chr4 18247728 18247788 -166040874 - Charlie1 DNA MER1_type -393 2368 2309 254 242 250 25 chr4 18247793 18247913 -166040749 - Charlie1 DNA MER1_type -2601 160 14 23 54 0 0 chr4 18248868 18248905 -166039757 + AT_rich Low_complexity Low_complexity 1 37 0 1222 183 26 0 chr4 18249138 18249368 -166039294 - MER46A DNA MER2_type 0 236 1 715 208 8 0 chr4 18251149 18251274 -166037388 + FLAM_A SINE Alu 1 126 -7 23 54 0 0 chr4 18251274 18251311 -166037351 + AT_rich Low_complexity Low_complexity 1 37 0 369 355 49 6 chr4 18252000 18252183 -166036479 - MIR SINE MIR -1 261 71 390 284 96 46 chr4 18252907 18253146 -166035516 - L1ME LINE L1 -381 5789 5539 229 363 38 6 chr4 18253295 18253455 -166035207 + MIR SINE MIR 84 248 -14 24 67 0 0 chr4 18253509 18253554 -166035108 + AT_rich Low_complexity Low_complexity 1 45 0 300 239 63 88 chr4 18253871 18254030 -166034632 - MER104 DNA Tc2 -25 155 1 2280 84 7 10 chr4 18254139 18254448 -166034214 - AluY SINE Alu -3 308 1 21 0 0 0 chr4 18254459 18254480 -166034182 + AT_rich Low_complexity Low_complexity 1 21 0 798 236 50 0 chr4 18255051 18255250 -166033412 + MER3 DNA MER1_type 1 209 0 24 0 0 0 chr4 18255327 18255351 -166033311 + AT_rich Low_complexity Low_complexity 1 24 0 354 326 51 2 chr4 18255358 18255557 -166033105 - MIR SINE MIR -13 249 4 2630 107 3 3 chr4 18256345 18256709 -166031953 - THE1B LTR MaLR 0 364 1 25 0 0 0 chr4 18256970 18256995 -166031667 + AT_rich Low_complexity Low_complexity 1 25 0 25 51 0 0 chr4 18257314 18257353 -166031309 + AT_rich Low_complexity Low_complexity 1 39 0 378 0 0 0 chr4 18257868 18257910 -166030752 + (CA)n Simple_repeat Simple_repeat 2 43 0 210 282 0 0 chr4 18257910 18257988 -166030674 + CT-rich Low_complexity Low_complexity 1 78 0 1101 238 22 118 chr4 18258165 18258811 -166029851 + Charlie7 DNA MER1_type 40 623 -1989 434 289 16 58 chr4 18261900 18262090 -166026572 + MIR SINE MIR 37 218 -44 333 295 22 14 chr4 18262648 18262787 -166025875 + L1ME4a LINE L1 5977 6116 -5 202 305 181 9 chr4 18263498 18263603 -166025059 + MIR SINE MIR 32 154 -108 878 198 0 0 chr4 18263636 18263803 -166024859 + FRAM SINE Alu 1 163 -13 1215 152 71 9 chr4 18263818 18264028 -166024634 - MER46A DNA MER2_type -13 223 1 2152 104 0 7 chr4 18264146 18264445 -166024217 + AluSx SINE Alu 1 297 -15 249 295 279 8 chr4 18264449 18264571 -166024091 - MIR3 SINE MIR -49 159 5 23 0 0 0 chr4 18265045 18265068 -166023594 + AT_rich Low_complexity Low_complexity 1 23 0 249 241 0 0 chr4 18265409 18265467 -166023195 + GA-rich Low_complexity Low_complexity 1 58 0 235 167 200 0 chr4 18265944 18266004 -166022658 + MER116 DNA Mariner 2 73 -7 285 214 45 136 chr4 18266056 18266152 -166022510 - MER103 DNA DNA 0 166 88 2233 95 3 0 chr4 18266152 18266456 -166022206 + AluSc SINE Alu 1 305 -4 285 214 45 136 chr4 18266456 18266513 -166022149 - MER103 DNA DNA -78 88 27 1885 127 10 14 chr4 18266668 18266959 -166021703 + AluJo SINE Alu 1 290 -22 27 0 0 0 chr4 18266959 18266986 -166021676 + AT_rich Low_complexity Low_complexity 1 27 0 2358 77 0 10 chr4 18267133 18267444 -166021218 + AluSg SINE Alu 1 308 -2 414 273 245 18 chr4 18268020 18268298 -166020364 - L3 LINE CR1 -7 1570 1230 818 137 24 0 chr4 18268376 18268500 -166020162 + FLAM_A SINE Alu 1 127 -6 26 0 0 0 chr4 18268500 18268526 -166020136 + AT_rich Low_complexity Low_complexity 1 26 0 1877 159 0 0 chr4 18268528 18268830 -166019832 + AluSx SINE Alu 1 302 -10 429 138 0 0 chr4 18268858 18268938 -166019724 + (TAGA)n Simple_repeat Simple_repeat 2 81 0 393 316 194 19 chr4 18268938 18269258 -166019404 - L3 LINE CR1 -491 1086 711 218 296 204 9 chr4 18270451 18270559 -166018103 - MIR SINE MIR -28 234 106 429 259 184 7 chr4 18270572 18270719 -166017943 - MER5A DNA MER1_type -8 181 9 415 289 44 15 chr4 18271068 18271203 -166017459 - L2 LINE L2 -1 3271 3133 354 268 84 17 chr4 18271208 18271387 -166017275 + MER112 DNA MER1_type 5 195 -65 373 285 32 24 chr4 18271899 18272022 -166016640 - MIR SINE MIR -62 146 23 26 30 0 0 chr4 18272807 18272840 -166015822 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr4 18273580 18273603 -166015059 + AT_rich Low_complexity Low_complexity 1 23 0 3252 121 23 0 chr4 18273904 18274384 -166014278 + L1PA16 LINE L1 5415 5905 -261 437 243 48 42 chr4 18274720 18274874 -166013788 + MER20B DNA MER1_type 41 198 -21 193 338 28 14 chr4 18275300 18275371 -166013291 - MIR SINE MIR -116 92 21 431 228 53 9 chr4 18276174 18276288 -166012374 - MER103 DNA DNA -45 121 3 232 344 65 11 chr4 18276413 18276506 -166012156 - MIR SINE MIR -66 142 45 1892 132 0 0 chr4 18276625 18276928 -166011734 + AluSx SINE Alu 4 306 0 333 251 104 18 chr4 18276944 18277107 -166011555 - L1ME4a LINE L1 -6 6115 5939 2093 254 92 24 chr4 18277114 18277787 -166010875 - HsTC2c DNA Tc2 -7 722 4 1033 68 0 8 chr4 18277861 18277993 -166010669 + AluY SINE Alu 1 131 -180 429 212 65 12 chr4 18278126 18278296 -166010366 - L1ME4a LINE L1 -206 5964 5786 26 0 0 0 chr4 18278296 18278322 -166010340 + AT_rich Low_complexity Low_complexity 1 26 0 928 260 102 19 chr4 18278642 18279050 -166009612 - L1ME4a LINE L1 -531 5631 5153 345 24 0 0 chr4 18279050 18279092 -166009570 + (CA)n Simple_repeat Simple_repeat 2 43 0 928 260 102 19 chr4 18279092 18279252 -166009410 - L1ME4a LINE L1 -1009 5153 5008 541 257 140 27 chr4 18279363 18279585 -166009077 - HAL1 LINE L1 -588 1919 1673 2199 163 48 11 chr4 18280241 18280615 -166008047 + MSTD LTR MaLR 9 396 0 1236 252 163 3 chr4 18280643 18281159 -166007503 - LTR50 LTR ERVL -111 684 1 2263 93 3 0 chr4 18281238 18281538 -166007124 + AluSc SINE Alu 1 301 -8 2150 124 35 32 chr4 18281844 18282216 -166006446 + THE1C LTR MaLR 1 373 -2 215 323 141 0 chr4 18283134 18283233 -166005429 + MIR SINE MIR 93 205 -57 * 402 219 14 0 chr4 18283222 18283295 -166005367 - L2 LINE L2 -3 3310 3237 969 230 14 9 chr4 18283307 18283529 -166005133 - L1ME3A LINE L1 -297 5873 5651 572 256 45 6 chr4 18283531 18283707 -166004955 - MER113 DNA MER1_type? -117 404 222 1440 178 47 7 chr4 18283717 18283992 -166004670 - AluJo SINE Alu -26 286 1 1406 222 10 3 chr4 18284013 18284310 -166004352 - AluJo SINE Alu -13 299 1 340 177 0 0 chr4 18284441 18284503 -166004159 + L1ME LINE L1 906 967 -5103 1731 318 61 31 chr4 18284538 18285453 -166003209 + L2 LINE L2 1562 2504 -810 2402 155 13 62 chr4 18285471 18285603 -166003059 + L1MB2 LINE L1 5201 5338 -833 6547 35 4 0 chr4 18285603 18286361 -166002301 + L1PA5 LINE L1 5383 6154 0 2402 155 13 62 chr4 18286361 18286774 -166001888 + L1MB2 LINE L1 5338 5725 -446 471 182 0 0 chr4 18286774 18286851 -166001811 - MLT1F LTR MaLR -465 77 1 384 266 0 0 chr4 18286856 18286935 -166001727 - MIR SINE MIR -114 148 70 404 214 10 20 chr4 18287363 18287461 -166001201 - L1MA8 LINE L1 -290 6001 5905 2399 158 4 48 chr4 18287472 18287947 -166000715 + L1MB2 LINE L1 5718 6171 0 3755 154 42 1 chr4 18287947 18288106 -166000556 + L1MB3 LINE L1 5468 5619 -564 423 0 0 0 chr4 18288106 18288153 -166000509 + (CA)n Simple_repeat Simple_repeat 2 48 0 3755 154 42 1 chr4 18288153 18288651 -166000011 + L1MB3 LINE L1 5619 6167 -16 797 334 86 40 chr4 18288682 18289050 -165999612 + L2 LINE L2 2529 2879 -434 1130 157 107 147 chr4 18289050 18289425 -165999237 - MLT1A1 LTR MaLR -2 363 4 797 334 86 40 chr4 18289425 18289581 -165999081 + L2 LINE L2 2879 3026 -287 7389 164 7 20 chr4 18289581 18291715 -165996947 - L1PA13 LINE L1 0 6163 4022 797 334 86 40 chr4 18291715 18291898 -165996764 + L2 LINE L2 3026 3286 -27 1916 102 26 0 chr4 18292164 18292430 -165996232 + AluSx SINE Alu 3 275 -37 2036 113 0 0 chr4 18292523 18292849 -165995813 + AluSq SINE Alu 1 326 0 229 268 134 0 chr4 18293303 18293385 -165995277 - MIR3 SINE MIR -37 171 79 289 211 133 70 chr4 18293798 18293926 -165994736 + MIR SINE MIR 117 252 -10 21 36 0 0 chr4 18293942 18293970 -165994692 + AT_rich Low_complexity Low_complexity 1 28 0 191 286 104 13 chr4 18294276 18294353 -165994309 - MIR3 SINE MIR -39 169 86 214 200 0 27 chr4 18294731 18294806 -165993856 + GA-rich Low_complexity Low_complexity 1 73 0 23 0 0 0 chr4 18294908 18294931 -165993731 + GC_rich Low_complexity Low_complexity 1 23 0 203 147 0 0 chr4 18297404 18297438 -165991224 + (CCG)n Simple_repeat Simple_repeat 1 34 0 25 65 0 0 chr4 18298005 18298051 -165990611 + GC_rich Low_complexity Low_complexity 1 46 0 21 71 0 0 chr4 18298247 18298289 -165990373 + GC_rich Low_complexity Low_complexity 1 42 0 223 239 14 0 chr4 18299889 18299960 -165988702 + (CGG)n Simple_repeat Simple_repeat 3 74 0 583 226 54 11 chr4 18300404 18300590 -165988072 + MER91A DNA MER1_type 3 196 0 204 118 40 40 chr4 18303381 18303457 -165985205 + CT-rich Low_complexity Low_complexity 2 77 0 217 301 133 0 chr4 18303644 18303727 -165984935 - MIR3 SINE MIR -16 192 99 198 167 0 0 chr4 18303854 18303890 -165984772 + (TG)n Simple_repeat Simple_repeat 1 36 0 681 64 45 0 chr4 18303890 18304000 -165984662 + GA-rich Low_complexity Low_complexity 4 118 0 293 216 0 0 chr4 18305214 18305265 -165983397 - MIR SINE MIR -65 143 93 240 262 49 0 chr4 18306692 18306753 -165981909 + MIR SINE MIR 63 126 -82 216 0 0 0 chr4 18307167 18307191 -165981471 + (A)n Simple_repeat Simple_repeat 1 24 0 254 301 0 0 chr4 18308816 18308899 -165979763 + G-rich Low_complexity Low_complexity 1 83 0 181 258 212 0 chr4 18309039 18309105 -165979557 + L2 LINE L2 3188 3267 -5 2091 98 0 42 chr4 18309152 18309467 -165979195 + AluSc SINE Alu 4 296 -13 25 0 0 0 chr4 18310161 18310186 -165978476 + AT_rich Low_complexity Low_complexity 1 25 0 192 231 341 0 chr4 18310509 18310600 -165978062 - L2 LINE L2 -8 3264 3143 215 304 234 5 chr4 18311160 18311344 -165977318 - MIR SINE MIR -5 257 32 201 191 0 0 chr4 18311400 18311442 -165977220 - MIR SINE MIR -68 140 99 287 324 118 15 chr4 18311614 18311818 -165976844 + MIR SINE MIR 26 250 -12 396 0 0 0 chr4 18312277 18312321 -165976341 + (CA)n Simple_repeat Simple_repeat 2 45 0 279 312 45 26 chr4 18312435 18312589 -165976073 - MIR SINE MIR -77 185 29 260 246 79 61 chr4 18313194 18313308 -165975354 - MIR3 SINE MIR -22 186 71 181 0 69 0 chr4 18313433 18313462 -165975200 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 328 164 0 0 chr4 18313510 18313565 -165975097 - MIR SINE MIR -133 129 75 722 245 113 20 chr4 18315409 18315613 -165973049 + MIR SINE MIR 23 245 -17 536 276 173 11 chr4 18315801 18315986 -165972676 + MIR SINE MIR 14 228 -34 199 302 83 25 chr4 18316166 18316301 -165972361 + MIR SINE MIR 9 153 -104 328 373 39 7 chr4 18317583 18317736 -165970926 - MIR SINE MIR -90 172 15 217 296 49 0 chr4 18317740 18317821 -165970841 + L2 LINE L2 3223 3307 -6 214 250 88 12 chr4 18319073 18319153 -165969509 - MER5A DNA MER1_type -89 100 15 22 56 0 0 chr4 18321358 18321394 -165967268 + AT_rich Low_complexity Low_complexity 1 36 0 537 332 74 0 chr4 18322066 18322256 -165966406 - MIR SINE MIR -1 261 58 23 0 0 0 chr4 18324712 18324735 -165963927 + AT_rich Low_complexity Low_complexity 1 23 0 213 39 0 0 chr4 18326147 18326173 -165962489 + (GA)n Simple_repeat Simple_repeat 1 26 0 26 74 0 0 chr4 18326186 18326240 -165962422 + AT_rich Low_complexity Low_complexity 1 54 0 279 56 0 111 chr4 18326611 18326665 -165961997 - FLAM_A SINE Alu 0 133 89 24 32 0 0 chr4 18327257 18327288 -165961374 + AT_rich Low_complexity Low_complexity 1 31 0 1925 162 3 3 chr4 18327535 18327837 -165960825 - AluJb SINE Alu -10 302 1 373 323 55 24 chr4 18328514 18328641 -165960021 - MIR SINE MIR -62 146 16 654 326 86 40 chr4 18328665 18329070 -165959592 + LTR16A LTR ERVL 16 439 -18 1957 181 105 37 chr4 18329070 18329584 -165959078 - MER34C LTR ERV1 0 585 37 1801 137 60 0 chr4 18330211 18330472 -165958190 + AluSg1 SINE Alu 1 282 -27 207 0 0 0 chr4 18330472 18330495 -165958167 + (TC)n Simple_repeat Simple_repeat 1 23 0 1801 137 60 0 chr4 18330495 18330517 -165958145 + AluSg1 SINE Alu 282 301 -8 1791 163 35 3 chr4 18331001 18331289 -165957373 - AluJo SINE Alu -14 298 2 1633 216 77 48 chr4 18331815 18332269 -165956393 - MLT1C LTR MaLR 0 467 1 1174 100 44 96 chr4 18332335 18332564 -165956098 - AluJo SINE Alu -25 287 71 2551 185 22 28 chr4 18332565 18333062 -165955600 - MSTB-int LTR MaLR -849 802 309 2329 139 0 0 chr4 18333091 18333437 -165955225 - MSTB-int LTR MaLR -1282 369 24 902 135 6 39 chr4 18333437 18333459 -165955203 - MSTD LTR MaLR -245 151 130 2595 151 29 7 chr4 18333459 18333876 -165954786 - MSTB LTR MaLR 0 426 1 902 135 6 39 chr4 18333876 18334009 -165954653 - MSTD LTR MaLR -266 130 1 644 296 69 5 chr4 18334320 18334536 -165954126 + MIR SINE MIR 3 232 -30 270 254 0 0 chr4 18334622 18334677 -165953985 + MLT1E3 LTR MaLR 11 65 -589 1994 239 52 7 chr4 18334726 18335191 -165953471 + MLT1E3 LTR MaLR 139 624 0 656 298 64 33 chr4 18335268 18335934 -165952728 - L1ME LINE L1 -558 5591 4906 440 296 66 28 chr4 18336004 18336321 -165952341 - L1ME LINE L1 -1699 4430 4102 583 249 29 57 chr4 18336324 18336533 -165952129 - L1ME LINE L1 -2069 4060 3858 696 229 70 38 chr4 18336551 18336708 -165951954 - FAM SINE Alu -10 165 4 802 193 114 139 chr4 18336714 18337030 -165951632 - AluJo SINE Alu -4 308 1 225 306 93 0 chr4 18337225 18337333 -165951329 - L1ME LINE L1 -4678 1632 1515 587 170 94 0 chr4 18337497 18337603 -165951059 - AluJb SINE Alu -13 299 184 241 254 95 0 chr4 18337603 18337666 -165950996 - AluJ/FLAM SINE Alu -228 74 6 580 263 36 39 chr4 18337692 18337973 -165950689 - L1ME LINE L1 -4867 1252 973 261 0 0 0 chr4 18337974 18338003 -165950659 + (TG)n Simple_repeat Simple_repeat 2 30 0 1212 206 0 0 chr4 18338007 18338226 -165950436 - AluJo SINE Alu -10 302 84 229 289 66 68 chr4 18338226 18338637 -165950025 - L1ME LINE L1 -5167 952 543 478 222 144 22 chr4 18338902 18339082 -165949580 - L1M4 LINE L1 -1161 4985 4784 1087 170 0 0 chr4 18339235 18339400 -165949262 - FRAM SINE Alu -13 163 1 485 275 134 61 chr4 18339424 18339900 -165948762 - L1M4 LINE L1 -1722 4424 3914 2300 113 0 0 chr4 18340209 18340519 -165948143 - AluSx SINE Alu 0 312 3 895 217 291 16 chr4 18340691 18341065 -165947597 + MLT1D LTR MaLR 21 497 -8 189 214 0 0 chr4 18342341 18342383 -165946279 + (CA)n Simple_repeat Simple_repeat 2 43 0 724 263 67 32 chr4 18342611 18342953 -165945709 - L1MEd LINE L1 -4862 2085 1732 336 313 119 8 chr4 18343115 18343256 -165945406 - MIR SINE MIR -66 142 35 1036 139 14 43 chr4 18343780 18343818 -165944844 - MLT2C1 LTR ERVL 0 397 359 318 26 0 0 chr4 18343818 18343857 -165944805 + (TG)n Simple_repeat Simple_repeat 2 40 0 1036 139 14 43 chr4 18343857 18344027 -165944635 - MLT2C1 LTR ERVL -38 359 195 409 271 72 54 chr4 18344378 18344544 -165944118 - MIR SINE MIR -48 214 46 25 31 0 0 chr4 18346046 18346078 -165942584 + AT_rich Low_complexity Low_complexity 1 32 0 2322 253 118 20 chr4 18346083 18346249 -165942413 - L1ME3A LINE L1 -28 6142 5994 258 32 0 0 chr4 18346249 18346280 -165942382 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2322 253 118 20 chr4 18346280 18347254 -165941408 - L1ME3A LINE L1 -176 5994 4899 2079 121 4 0 chr4 18347264 18347568 -165941094 + AluSg SINE Alu 2 306 0 245 132 93 0 chr4 18347784 18347854 -165940808 - L1M4b LINE L1 -5175 1782 1607 2226 129 102 58 chr4 18349152 18349562 -165939100 + MSTC LTR MaLR 1 428 0 827 245 73 77 chr4 18349690 18350043 -165938619 - L1ME3 LINE L1 -211 5951 5598 2189 108 0 29 chr4 18350043 18350357 -165938305 - AluSx SINE Alu -7 305 1 827 245 73 77 chr4 18350357 18350396 -165938266 - L1ME3 LINE L1 -564 5598 5560 2159 105 3 6 chr4 18350396 18350709 -165937953 - AluSx SINE Alu 0 312 1 827 245 73 77 chr4 18350709 18350780 -165937882 - L1ME3 LINE L1 -602 5560 5489 661 233 153 120 chr4 18350854 18351514 -165937148 + LTR50 LTR ERVL 98 779 -16 883 276 131 20 chr4 18351521 18352450 -165936212 - L1P5 LINE L1 -663 5491 4456 297 135 0 0 chr4 18352692 18352744 -165935918 + (TA)n Simple_repeat Simple_repeat 1 52 0 2238 98 7 7 chr4 18352744 18353039 -165935623 - AluSc SINE Alu -14 295 1 1300 248 40 6 chr4 18353355 18353702 -165934960 + L1ME3 LINE L1 5714 6072 -90 1122 193 21 13 chr4 18354212 18354655 -165934007 - MLT1D LTR MaLR 0 505 5 464 232 0 99 chr4 18354660 18354802 -165933860 + L2 LINE L2 3185 3312 -1 1755 171 0 35 chr4 18354803 18355118 -165933544 - AluJb SINE Alu -7 305 2 380 413 40 0 chr4 18355153 18355378 -165933284 + L3 LINE CR1 1271 1504 -73 225 217 0 43 chr4 18355735 18355781 -165932881 - MARNA DNA Mariner -69 517 474 204 243 99 42 chr4 18356413 18356493 -165932169 - MIR SINE MIR -55 153 69 324 291 111 0 chr4 18356554 18356671 -165931991 - MIR SINE MIR -16 246 117 701 176 37 7 chr4 18357013 18357149 -165931513 - Charlie1 DNA MER1_type 0 2761 2622 586 243 184 10 chr4 18357132 18357338 -165931324 - Charlie1 DNA MER1_type -2519 242 1 * 383 236 107 74 chr4 18358677 18358893 -165929769 + MIR SINE MIR 20 242 -20 23 86 0 0 chr4 18362476 18362534 -165926128 + AT_rich Low_complexity Low_complexity 1 58 0 23 0 0 0 chr4 18363274 18363297 -165925365 + AT_rich Low_complexity Low_complexity 1 23 0 26 50 0 0 chr4 18364763 18364803 -165923859 + AT_rich Low_complexity Low_complexity 1 40 0 21 57 0 0 chr4 18368678 18368713 -165919949 + AT_rich Low_complexity Low_complexity 1 35 0 186 43 0 0 chr4 18369502 18369525 -165919137 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 21 36 0 0 chr4 18369819 18369847 -165918815 + AT_rich Low_complexity Low_complexity 1 28 0 49 43 0 0 chr4 18369920 18369990 -165918672 + AT_rich Low_complexity Low_complexity 1 70 0 807 225 12 0 chr4 18370040 18370200 -165918462 + FRAM SINE Alu 1 162 -4 31141 99 10 11 chr4 18370303 18374847 -165913815 - L1P LINE L1 -1597 4549 11 515 263 117 9 chr4 18374863 18375076 -165913586 - L1ME2 LINE L1 -51 6113 5878 882 187 50 124 chr4 18375122 18375381 -165913281 - pTR5 LTR ERV1 -133 581 172 256 232 18 0 chr4 18375513 18375569 -165913093 - L1MB5 LINE L1 -46 6128 6072 884 200 0 0 chr4 18375994 18376154 -165912508 + FRAM SINE Alu 4 163 -3 1387 203 35 18 chr4 18377669 18377955 -165910707 + AluJo SINE Alu 3 293 -19 3375 252 81 18 chr4 18378644 18380305 -165908357 - L1MCa LINE L1 -2710 4231 2393 4697 188 49 7 chr4 18380335 18381867 -165906795 - L1MA7 LINE L1 0 6291 4691 315 0 0 0 chr4 18381867 18381902 -165906760 + (TG)n Simple_repeat Simple_repeat 2 36 0 4697 188 49 7 chr4 18381902 18381938 -165906724 - L1MA7 LINE L1 -1600 4691 4658 3672 230 82 26 chr4 18381940 18383795 -165904867 - L1MCc LINE L1 -4617 2505 1 21 0 0 0 chr4 18383803 18383824 -165904838 + AT_rich Low_complexity Low_complexity 1 21 0 1202 229 0 0 chr4 18384063 18384281 -165904381 - MER58A DNA MER1_type 0 224 7 240 273 98 70 chr4 18384579 18384722 -165903940 - MIR SINE MIR -96 166 20 415 274 10 10 chr4 18384937 18385039 -165903623 - MIR3 SINE MIR -10 198 97 1229 234 97 6 chr4 18385089 18385431 -165903231 - MER63 DNA MER1_type 0 1061 689 445 240 197 16 chr4 18385646 18385829 -165902833 + MIR SINE MIR 47 262 0 690 282 162 38 chr4 18386103 18386529 -165902133 + L3b LINE CR1 1102 1580 -3 681 142 8 60 chr4 18387000 18387134 -165901528 + MLT1A2 LTR MaLR 1 127 -238 671 160 0 8 chr4 18387140 18387259 -165901403 + FLAM_C SINE Alu 1 118 -25 879 201 73 14 chr4 18387275 18387494 -165901168 + MLT1A2 LTR MaLR 135 366 -8 403 219 49 0 chr4 18388168 18388250 -165900412 - MER7A DNA MER2_type -1 336 251 2053 96 47 209 chr4 18388252 18388783 -165899879 - MLT2A2 LTR ERVL -8 445 1 1539 117 68 42 chr4 18388783 18389046 -165899616 - MER7A DNA MER2_type -78 268 1 503 316 91 21 chr4 18389062 18389249 -165899413 + L3b LINE CR1 1286 1485 -98 192 77 0 0 chr4 18389928 18389954 -165898708 + (T)n Simple_repeat Simple_repeat 1 26 0 21 0 0 0 chr4 18390601 18390622 -165898040 + AT_rich Low_complexity Low_complexity 1 21 0 553 346 21 16 chr4 18390921 18391164 -165897498 + MIR SINE MIR 19 262 0 184 308 99 44 chr4 18391376 18391467 -165897195 - L2 LINE L2 -3 3269 3174 10345 232 37 34 chr4 18391613 18395470 -165893192 + L1M2 LINE L1 180 4070 -2778 2724 160 9 65 chr4 18395506 18396403 -165892259 + L1M2 LINE L1 5408 6250 -743 452 367 157 14 chr4 18396407 18396951 -165891711 + L2 LINE L2 2601 3226 -87 29 60 0 0 chr4 18397465 18397515 -165891147 + AT_rich Low_complexity Low_complexity 1 50 0 198 0 0 0 chr4 18398605 18398627 -165890035 + (CTG)n Simple_repeat Simple_repeat 2 23 0 353 273 105 47 chr4 18399412 18399584 -165889078 + MIR3 SINE MIR 24 205 -3 190 170 0 85 chr4 18399818 18399865 -165888797 - MIR SINE MIR 0 262 220 22 0 0 0 chr4 18399916 18399938 -165888724 + AT_rich Low_complexity Low_complexity 1 22 0 1949 249 65 4 chr4 18400186 18400724 -165887938 - L2 LINE L2 -494 2820 2250 9316 163 37 40 chr4 18400725 18402692 -165885970 + L1P3 LINE L1 10 1996 -4465 313 244 217 9 chr4 18402692 18402807 -165885855 - L2 LINE L2 -1060 2254 2116 4295 126 55 57 chr4 18402810 18403213 -165885449 + L1MA9 LINE L1 5425 5827 -485 2537 58 0 0 chr4 18403213 18403521 -165885141 + AluY SINE Alu 1 308 -3 4295 126 55 57 chr4 18403521 18404007 -165884655 + L1MA9 LINE L1 5827 6312 0 2266 99 0 0 chr4 18404068 18404360 -165884302 + AluSc SINE Alu 1 292 -17 889 259 67 13 chr4 18404593 18404832 -165883830 + MIR SINE MIR 11 262 0 32 103 0 0 chr4 18404893 18405009 -165883653 + AT_rich Low_complexity Low_complexity 1 116 0 1213 194 30 11 chr4 18406601 18406869 -165881793 - MLT1B LTR MaLR -117 273 1 182 256 35 81 chr4 18406901 18406987 -165881675 - MIR3 SINE MIR -3 205 124 27 81 0 0 chr4 18407037 18407099 -165881563 + AT_rich Low_complexity Low_complexity 1 62 0 583 202 4 19 chr4 18407691 18407818 -165880844 + L1PA16 LINE L1 6039 6165 0 * 3984 180 50 53 chr4 18407816 18407907 -165880755 + L1MB7 LINE L1 4992 5082 -1102 1650 170 29 0 chr4 18407907 18408183 -165880479 + AluSx SINE Alu 15 298 -14 3984 180 50 53 chr4 18408183 18409267 -165879395 + L1MB7 LINE L1 5082 6165 -19 10210 192 29 17 chr4 18409455 18412493 -165876169 - L1PA16 LINE L1 -285 6584 3491 2310 110 3 0 chr4 18412493 18412803 -165875859 - AluSx SINE Alu -1 311 1 10210 192 29 17 chr4 18412803 18413224 -165875438 - L1PA16 LINE L1 -3378 3491 3077 5329 133 21 32 chr4 18413203 18414269 -165874393 - L1PA16 LINE L1 -1 6868 5808 * 5404 219 52 16 chr4 18414292 18415990 -165872672 - L1PA16 LINE L1 -3744 3105 1355 346 275 0 0 chr4 18415994 18416085 -165872577 - L1PA16 LINE L1 -5285 1564 1474 2913 199 27 87 chr4 18417341 18418274 -165870388 - L1MEc LINE L1 -1144 5500 4624 2336 93 0 7 chr4 18418294 18418596 -165870066 + AluSx SINE Alu 1 300 -12 1277 234 71 7 chr4 18418617 18419015 -165869647 - L1MEc LINE L1 -2215 4429 1345 1671 191 115 29 chr4 18419249 18419700 -165868962 + LTR2B LTR ERV1 1 490 0 636 318 89 35 chr4 18419709 18420284 -165868378 - L1MEc LINE L1 -5760 1065 460 282 385 55 0 chr4 18420818 18420927 -165867735 - L2 LINE L2 -4 3268 3154 1540 245 164 23 chr4 18422354 18422922 -165865740 - L2 LINE L2 -1278 2036 1389 1870 195 74 14 chr4 18422934 18423364 -165865298 + MLT1C LTR MaLR 4 459 -8 1153 178 29 25 chr4 18423810 18424051 -165864611 - MER58B DNA MER1_type 0 341 100 315 180 33 0 chr4 18424041 18424102 -165864560 - AluSq SINE Alu -4 299 237 * 1392 97 0 5 chr4 18424102 18424287 -165864375 - AluSq SINE Alu -129 184 1 352 211 100 11 chr4 18424291 18424381 -165864281 - MER58B DNA MER1_type -243 98 1 7125 47 4 0 chr4 18424623 18425925 -165862737 - L1PA6 LINE L1 0 6154 4854 1669 79 7 4 chr4 18426078 18426314 -165862348 - pTR5 LTR ERV1 -219 495 172 404 238 10 0 chr4 18426317 18426418 -165862244 - LTR30 LTR ERV1 -80 642 541 3937 130 61 36 chr4 18426419 18427355 -165861307 - pTR5 LTR ERV1 -417 2021 741 470 338 73 17 chr4 18427446 18427733 -165860929 - L1M4 LINE L1 -1924 4222 3920 421 326 93 21 chr4 18427740 18428225 -165860437 - L1M4 LINE L1 -2253 3893 3374 397 274 124 71 chr4 18429095 18429660 -165859002 - HAL1b LINE L1 -746 602 8 26 88 0 0 chr4 18430835 18430903 -165857759 + AT_rich Low_complexity Low_complexity 1 68 0 557 306 127 39 chr4 18431236 18431677 -165856985 - HAL1 LINE L1 -785 1722 1243 24 0 0 0 chr4 18432020 18432044 -165856618 + AT_rich Low_complexity Low_complexity 1 24 0 2130 135 122 13 chr4 18432332 18432718 -165855944 - MSTA LTR MaLR 0 428 1 950 327 21 28 chr4 18432738 18433166 -165855496 + MLT2F LTR ERVL 1 425 -238 25 51 0 0 chr4 18433548 18433587 -165855075 + AT_rich Low_complexity Low_complexity 1 39 0 12630 86 6 1 chr4 18434001 18436567 -165852095 + L1PA7 LINE L1 3592 6146 -8 24 77 0 0 chr4 18436642 18436694 -165851968 + AT_rich Low_complexity Low_complexity 1 52 0 2113 99 7 0 chr4 18438172 18438478 -165850184 - AluSp SINE Alu 0 308 1 232 213 16 16 chr4 18439150 18439211 -165849451 - L2 LINE L2 -527 2787 2727 1035 238 70 46 chr4 18439222 18439483 -165849179 + MER58B DNA MER1_type 6 279 -2141 1673 174 3 3 chr4 18439483 18439795 -165848867 + AluJb SINE Alu 3 314 0 1035 238 70 46 chr4 18439795 18439860 -165848802 + MER58B DNA MER1_type 279 341 0 5574 236 67 42 chr4 18439863 18441036 -165847626 + L1ME3 LINE L1 2162 3408 -2738 1482 84 5 14 chr4 18441036 18441251 -165847411 - L1PA7 LINE L1 -2 6152 5940 5574 236 67 42 chr4 18441251 18442064 -165846598 + L1ME3 LINE L1 3408 4199 -1947 593 288 134 23 chr4 18442058 18442877 -165845785 + L1ME3 LINE L1 4457 5366 -780 * 843 286 98 25 chr4 18442896 18443375 -165845287 + L1ME3 LINE L1 5401 5914 -248 592 274 139 19 chr4 18443384 18443592 -165845070 + MIR SINE MIR 8 240 -22 2499 57 0 0 chr4 18443782 18444079 -165844583 - AluY SINE Alu -14 297 1 21 57 0 0 chr4 18445046 18445081 -165843581 + AT_rich Low_complexity Low_complexity 1 35 0 230 231 66 33 chr4 18445152 18445243 -165843419 - L1ME3A LINE L1 -106 6064 5971 384 248 85 0 chr4 18445308 18445449 -165843213 - L1ME3A LINE L1 -222 5948 5796 23 33 0 0 chr4 18446529 18446559 -165842103 + AT_rich Low_complexity Low_complexity 1 30 0 316 321 107 12 chr4 18447520 18447688 -165840974 + MIR SINE MIR 36 219 -43 375 360 34 7 chr4 18447691 18447838 -165840824 + L2 LINE L2 2608 2758 -556 2117 148 6 26 chr4 18448023 18448367 -165840295 + MER1B DNA MER1_type 1 337 0 349 297 50 30 chr4 18448558 18448659 -165840003 + L2 LINE L2 3166 3268 -4 201 333 66 71 chr4 18449226 18449409 -165839253 + L2 LINE L2 2909 3090 -182 422 241 83 9 chr4 18449600 18449708 -165838954 - MIR SINE MIR -25 237 122 940 123 0 0 chr4 18449711 18449866 -165838796 - L1MA8 LINE L1 -31 6260 6106 505 98 12 4 chr4 18449865 18449962 -165838700 - L1MA8 LINE L1 -122 6169 6074 * 344 181 69 0 chr4 18449934 18450006 -165838656 + L1M2 LINE L1 5469 5545 -755 * 11320 59 14 10 chr4 18450486 18452795 -165835867 - L1PA6 LINE L1 -13 6141 3862 563 207 103 11 chr4 18452871 18453045 -165835617 + L1MC5 LINE L1 7724 7913 -48 3931 193 34 12 chr4 18453101 18454391 -165834271 - L1MB2 LINE L1 0 6171 4807 936 237 159 27 chr4 18454766 18455251 -165833411 - Charlie7 DNA MER1_type -1286 1326 778 5723 114 14 0 chr4 18455318 18456427 -165832235 - L1PA13 LINE L1 -2 6161 5031 1678 174 29 6 chr4 18456427 18456772 -165831890 - L1 LINE L1 -865 5281 4929 * 7786 185 53 1 chr4 18456766 18458181 -165830481 - L1PA13 LINE L1 -4026 2771 982 198 0 0 0 chr4 18458181 18458203 -165830459 + (CAG)n Simple_repeat Simple_repeat 2 23 0 7786 185 53 1 chr4 18458203 18458765 -165829897 - L1PA13 LINE L1 -5815 982 450 1492 131 5 5 chr4 18458765 18458987 -165829675 - THE1B LTR MaLR -132 232 11 359 0 0 0 chr4 18458989 18459029 -165829633 - THE1B LTR MaLR -324 40 1 333 218 0 0 chr4 18459032 18459087 -165829575 + L2 LINE L2 3214 3268 -4 28 0 0 0 chr4 18459270 18459298 -165829364 + AT_rich Low_complexity Low_complexity 1 28 0 200 35 35 0 chr4 18459546 18459575 -165829087 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 2367 99 0 3 chr4 18459578 18459882 -165828780 + AluSx SINE Alu 3 305 -7 543 245 117 27 chr4 18460700 18460888 -165827774 - MIR SINE MIR 0 262 58 28 61 0 0 chr4 18461236 18461285 -165827377 + AT_rich Low_complexity Low_complexity 1 49 0 246 263 40 0 chr4 18461299 18461375 -165827287 - L1ME4a LINE L1 -78 6043 5965 330 335 68 15 chr4 18461442 18461589 -165827073 - MIR SINE MIR -40 168 16 379 250 214 42 chr4 18461590 18462094 -165826568 - L1ME4a LINE L1 -179 5942 5352 6614 254 128 15 chr4 18462699 18463347 -165825315 + L2 LINE L2 577 1150 -2164 2199 110 10 3 chr4 18463347 18463647 -165825015 - AluSg1 SINE Alu -7 302 1 6614 254 128 15 chr4 18463647 18465094 -165823568 + L2 LINE L2 1150 2909 -405 200 344 22 0 chr4 18465454 18465544 -165823118 + L3b LINE CR1 1103 1194 -389 31 0 0 0 chr4 18465765 18465796 -165822866 + AT_rich Low_complexity Low_complexity 1 31 0 243 0 0 0 chr4 18466780 18466807 -165821855 + (TG)n Simple_repeat Simple_repeat 2 28 0 198 231 39 19 chr4 18466914 18466966 -165821696 - L2 LINE L2 -6 3266 3214 511 294 41 16 chr4 18467294 18467488 -165821174 - MIR SINE MIR -62 200 2 198 294 91 35 chr4 18467846 18467989 -165820673 - L2 LINE L2 -744 2570 2420 395 154 26 0 chr4 18468577 18468655 -165820007 + (CATA)n Simple_repeat Simple_repeat 2 81 0 382 315 35 21 chr4 18468985 18469128 -165819534 - L2 LINE L2 -1 3271 3127 398 273 74 16 chr4 18470069 18470190 -165818472 - MIR3 SINE MIR -13 195 68 190 180 40 40 chr4 18472160 18472210 -165816452 + L2 LINE L2 3222 3271 -1 216 0 0 0 chr4 18475170 18475194 -165813468 + (T)n Simple_repeat Simple_repeat 1 24 0 257 354 61 0 chr4 18475505 18475604 -165813058 - MIR3 SINE MIR -17 191 87 30 0 0 0 chr4 18475648 18475678 -165812984 + AT_rich Low_complexity Low_complexity 1 30 0 24 32 0 0 chr4 18475726 18475757 -165812905 + AT_rich Low_complexity Low_complexity 1 31 0 229 330 50 40 chr4 18475812 18475912 -165812750 - L2 LINE L2 -31 3241 3141 182 317 127 21 chr4 18476293 18476435 -165812227 - MIR SINE MIR -46 216 60 322 288 23 8 chr4 18477713 18477845 -165810817 + MLT1K LTR MaLR 339 472 -116 31 0 0 0 chr4 18477862 18477893 -165810769 + AT_rich Low_complexity Low_complexity 1 31 0 187 333 50 0 chr4 18477933 18477993 -165810669 - L2 LINE L2 -22 3250 3188 230 325 83 17 chr4 18478075 18478195 -165810467 + L3 LINE CR1 871 998 -579 457 245 28 0 chr4 18478214 18478320 -165810342 - MER5A DNA MER1_type -71 118 10 457 337 59 19 chr4 18478389 18478659 -165810003 + L3 LINE CR1 1149 1429 -148 227 143 48 0 chr4 18478755 18478797 -165809865 - Charlie8 DNA MER1_type -2141 276 233 423 274 0 11 chr4 18478852 18478947 -165809715 - MER91B DNA MER1_type -1 189 96 483 257 28 21 chr4 18480153 18480297 -165808365 + MIR3 SINE MIR 15 159 -49 1991 189 114 16 chr4 18480423 18480915 -165807747 + MLT1F LTR MaLR 2 541 -1 335 341 41 8 chr4 18480917 18481040 -165807622 - MIR SINE MIR -101 161 35 511 273 105 50 chr4 18481341 18481923 -165806739 - L1ME4a LINE L1 -14 6107 5494 196 325 29 86 chr4 18482285 18482494 -165806168 + L2 LINE L2 3075 3271 -1 254 306 73 8 chr4 18482539 18482663 -165805999 + MIR3 SINE MIR 7 138 -70 193 250 0 0 chr4 18482683 18482723 -165805939 + MER5B DNA MER1_type 1 40 -138 180 205 0 0 chr4 18482827 18482866 -165805796 + MIR SINE MIR 114 152 -110 187 351 0 0 chr4 18483540 18483597 -165805065 - L2 LINE L2 -15 3257 3201 519 309 96 5 chr4 18483601 18483821 -165804841 - MIR SINE MIR 0 262 23 779 254 43 35 chr4 18484239 18484471 -165804191 + MIR SINE MIR 29 262 0 2197 103 11 0 chr4 18484723 18485005 -165803657 + AluSx SINE Alu 1 285 -27 921 268 55 28 chr4 18485029 18485391 -165803271 - MLT1L LTR MaLR -75 540 169 315 237 86 32 chr4 18485397 18485490 -165803172 - MER5B DNA MER1_type 0 178 81 200 57 0 29 chr4 18485494 18485529 -165803133 + (TTTAA)n Simple_repeat Simple_repeat 4 37 0 195 42 0 0 chr4 18485550 18485574 -165803088 + (TG)n Simple_repeat Simple_repeat 1 24 0 442 236 97 28 chr4 18485624 18485768 -165802894 - MLT1L LTR MaLR -456 159 6 293 323 89 38 chr4 18485854 18486012 -165802650 + MER5A DNA MER1_type 18 183 -6 433 316 127 5 chr4 18486126 18486338 -165802324 + MIR SINE MIR 20 257 -5 377 305 141 23 chr4 18488672 18488800 -165799862 + MIR3 SINE MIR 20 162 -46 1149 293 93 16 chr4 18489829 18490314 -165798348 - LTR67 LTR ERVL 0 557 36 1760 159 28 7 chr4 18490739 18491029 -165797633 + AluSx SINE Alu 1 296 -16 342 313 56 20 chr4 18491543 18491738 -165796924 - L1ME4a LINE L1 -213 5908 5707 2363 185 75 2 chr4 18492341 18492378 -165796284 - MLT2B2 LTR ERVL 0 515 482 488 16 16 0 chr4 18492378 18492439 -165796223 + (TAGA)n Simple_repeat Simple_repeat 1 62 0 2363 185 75 2 chr4 18492439 18492881 -165795781 - MLT2B2 LTR ERVL -33 482 1 181 267 0 0 chr4 18492965 18493010 -165795652 - L2 LINE L2 0 3313 3269 240 340 187 18 chr4 18493061 18493558 -165795104 + L2 LINE L2 2275 2855 -459 197 213 21 0 chr4 18494456 18494503 -165794159 - L2 LINE L2 -8 3305 3258 317 313 77 62 chr4 18494522 18494730 -165793932 + MIR SINE MIR 22 232 -30 302 244 100 93 chr4 18494852 18494893 -165793769 - MLT1J LTR MaLR 0 511 472 1587 194 17 92 chr4 18494893 18495363 -165793299 + MER63B DNA MER1_type 1 435 -1 302 244 100 93 chr4 18495363 18495600 -165793062 - MLT1J LTR MaLR -39 472 231 1949 146 76 95 chr4 18495630 18496016 -165792646 - MLT1D LTR MaLR 0 505 130 2552 163 21 2 chr4 18496016 18496434 -165792228 - MSTB LTR MaLR 0 426 1 1949 146 76 95 chr4 18496434 18496562 -165792100 - MLT1D LTR MaLR -375 130 1 267 189 0 0 chr4 18496913 18496966 -165791696 + C-rich Low_complexity Low_complexity 3 55 0 2262 150 12 28 chr4 18498316 18498743 -165789919 - L1MB3 LINE L1 -8 6175 5756 778 139 24 2 chr4 18498755 18498936 -165789726 - L1P4 LINE L1 -722 5443 5255 246 322 81 0 chr4 18500567 18500654 -165788008 - MIR3 SINE MIR -28 180 87 2101 93 0 34 chr4 18500938 18501253 -165787409 + AluSq SINE Alu 2 306 0 745 139 27 0 chr4 18503216 18503440 -165785222 + L1MA5A LINE L1 6011 6274 -23 247 289 7 22 chr4 18505274 18505409 -165783253 + CT-rich Low_complexity Low_complexity 3 135 0 215 73 49 0 chr4 18506338 18506379 -165782283 + T-rich Low_complexity Low_complexity 2 44 0 7611 26 5 2 chr4 18506391 18507747 -165780915 - L1PA4 LINE L1 -8 6147 4790 7006 24 0 0 chr4 18507747 18508606 -165780056 + L1PA4 LINE L1 3903 4761 -1385 224 282 27 87 chr4 18509029 18509178 -165779484 + L2 LINE L2 2994 3133 -180 3684 125 40 12 chr4 18509201 18509802 -165778860 - MER51A LTR ERV1 -16 618 1 462 282 86 12 chr4 18509817 18509980 -165778682 + L2 LINE L2 3138 3312 -1 547 162 174 54 chr4 18511008 18511175 -165777487 + MER3 DNA MER1_type 1 187 -22 1790 159 0 0 chr4 18511420 18511691 -165776971 + AluJb SINE Alu 25 295 -17 1631 197 153 2 chr4 18511715 18511753 -165776909 - MLT2B1 LTR ERVL -2 518 487 396 0 0 0 chr4 18511753 18511797 -165776865 + (CA)n Simple_repeat Simple_repeat 2 45 0 1631 197 153 2 chr4 18511797 18512184 -165776478 - MLT2B1 LTR ERVL -33 487 29 2097 139 16 40 chr4 18513322 18513695 -165774967 + THE1B LTR MaLR 1 364 0 232 319 9 35 chr4 18513851 18513964 -165774698 + MIR3 SINE MIR 1 110 -98 1266 133 49 61 chr4 18513964 18514228 -165774434 - L1MA9 LINE L1 -4 6308 6048 1005 205 36 0 chr4 18514341 18514565 -165774097 - Charlie1 DNA MER1_type -2529 232 1 847 264 60 90 chr4 18514599 18515000 -165773662 + L2 LINE L2 2924 3312 -1 1323 138 17 0 chr4 18515041 18515280 -165773382 - L1MA7 LINE L1 -3 6288 6046 2897 75 8 2 chr4 18515289 18515691 -165772971 - L1PA8 LINE L1 -3 6169 5766 2115 129 10 7 chr4 18516035 18516344 -165772318 - AluSx SINE Alu -2 310 1 743 226 56 64 chr4 18517028 18517089 -165771573 - MIR SINE MIR -19 243 183 390 21 0 0 chr4 18517089 18517136 -165771526 + (TA)n Simple_repeat Simple_repeat 2 48 0 743 226 56 64 chr4 18517136 18517308 -165771354 - MIR SINE MIR -79 183 12 937 230 5 0 chr4 18517461 18517665 -165770997 + MER3 DNA MER1_type 5 209 0 21 0 0 0 chr4 18519053 18519074 -165769588 + AT_rich Low_complexity Low_complexity 1 21 0 1674 290 9 69 chr4 18519341 18520011 -165768651 + L1M2 LINE L1 14 643 -6566 2878 190 20 12 chr4 18520241 18520889 -165767773 + L1M2 LINE L1 1753 2405 -4804 1040 69 0 0 chr4 18520883 18521027 -165767635 - L1PA7 LINE L1 -332 5822 5679 * 2268 73 0 0 chr4 18521027 18521312 -165767350 + L1PA7 LINE L1 5852 6137 -17 459 0 0 0 chr4 18521312 18521363 -165767299 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 252 0 0 0 chr4 18521363 18521391 -165767271 + (CA)n Simple_repeat Simple_repeat 2 29 0 357 159 0 0 chr4 18521391 18521454 -165767208 + (TA)n Simple_repeat Simple_repeat 1 63 0 12555 200 36 27 chr4 18521455 18525786 -165762876 + L1M2 LINE L1 2372 6776 -586 844 198 14 10 chr4 18525791 18525998 -165762664 + L1MA5 LINE L1 5034 5241 -905 3072 153 32 3 chr4 18526048 18526114 -165762548 + L1MA5 LINE L1 5715 5778 -522 339 25 0 0 chr4 18526114 18526154 -165762508 + (CA)n Simple_repeat Simple_repeat 2 41 0 3072 153 32 3 chr4 18526154 18526655 -165762007 + L1MA5 LINE L1 5778 6298 -2 1154 244 28 102 chr4 18526797 18527091 -165761571 - L2 LINE L2 0 3313 3113 2178 101 0 14 chr4 18527091 18527414 -165761248 + AluSx SINE Alu 1 319 0 1154 244 28 102 chr4 18527414 18527799 -165760863 - L2 LINE L2 -200 3113 2701 436 248 58 0 chr4 18527799 18527936 -165760726 - L1ME2 LINE L1 -12 6152 6008 1431 224 61 3 chr4 18527937 18528280 -165760382 + MLT1A1 LTR MaLR 3 365 0 340 226 49 39 chr4 18528284 18528386 -165760276 - L1MDa LINE L1 -2990 3550 3448 1035 227 23 0 chr4 18528386 18528602 -165760060 - MER58A DNA MER1_type -3 221 1 1058 209 110 25 chr4 18528634 18528998 -165759664 - L1MDa LINE L1 -5189 1351 957 475 214 8 40 chr4 18528992 18529118 -165759544 - L1MDa LINE L1 -6385 155 34 * 8595 160 25 11 chr4 18529166 18530882 -165757780 - L1PA13 LINE L1 -6 6157 4401 189 0 0 0 chr4 18530882 18530903 -165757759 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 8595 160 25 11 chr4 18530903 18531606 -165757056 - L1PA13 LINE L1 -1762 4401 3709 1338 214 59 15 chr4 18531614 18532006 -165756656 - L1M4 LINE L1 -3127 3019 2611 209 301 52 69 chr4 18532251 18532424 -165756238 + L2 LINE L2 2804 2973 -299 259 253 89 13 chr4 18532567 18532646 -165756016 - L2 LINE L2 -29 3284 3200 23 0 0 0 chr4 18533058 18533081 -165755581 + AT_rich Low_complexity Low_complexity 1 23 0 251 295 75 17 chr4 18533251 18533378 -165755284 - MIR SINE MIR -63 145 18 605 311 165 10 chr4 18534136 18534548 -165754114 - L2 LINE L2 -1 3312 2837 1177 84 2 21 chr4 18535178 18535519 -165753143 + (TTTC)n Simple_repeat Simple_repeat 1 516 0 327 293 198 24 chr4 18535816 18536028 -165752634 - MIR SINE MIR 0 262 14 256 333 32 57 chr4 18536203 18536326 -165752336 - L2 LINE L2 -3 3269 3150 1531 261 116 30 chr4 18536453 18537094 -165751568 - L2 LINE L2 -1 3312 2564 1597 208 30 24 chr4 18537094 18537464 -165751198 + MLT1A2 LTR MaLR 1 372 -2 1531 261 116 30 chr4 18537464 18537820 -165750842 - L2 LINE L2 -749 2564 2240 272 244 202 42 chr4 18537787 18537906 -165750756 + MIR SINE MIR 17 154 -108 * 773 106 0 8 chr4 18538057 18538180 -165750482 + (TCTCC)n Simple_repeat Simple_repeat 3 124 0 1834 167 20 0 chr4 18538180 18538473 -165750189 - AluSx SINE Alu -13 299 1 382 350 24 0 chr4 18538547 18538670 -165749992 + MER5A DNA MER1_type 61 186 -3 214 356 23 53 chr4 18540319 18540451 -165748211 + L2 LINE L2 3179 3306 -7 203 265 206 0 chr4 18540572 18540640 -165748022 - MIR SINE MIR -18 244 163 268 287 138 42 chr4 18541039 18541136 -165747526 - L3 LINE CR1 -2 1575 1489 2643 106 3 13 chr4 18541136 18541515 -165747147 + THE1C LTR MaLR 1 375 0 268 287 138 42 chr4 18541515 18541584 -165747078 - L3 LINE CR1 -88 1489 1393 227 282 24 35 chr4 18541678 18541763 -165746899 - L3 LINE CR1 -356 1221 1138 211 350 70 20 chr4 18541769 18541869 -165746793 - L2 LINE L2 -43 3229 3125 360 360 17 34 chr4 18541961 18542255 -165746407 + L2 LINE L2 2097 2385 -929 277 364 10 0 chr4 18542603 18542702 -165745960 + L2 LINE L2 3173 3272 0 295 298 0 12 chr4 18542804 18542888 -165745774 - L2 LINE L2 -4 3268 3186 191 234 43 0 chr4 18543355 18543402 -165745260 - MIR3 SINE MIR -48 160 112 181 342 105 9 chr4 18543930 18544044 -165744618 + MIR SINE MIR 17 141 -67 258 196 149 56 chr4 18544215 18544322 -165744340 + MIR3 SINE MIR 89 205 -3 333 0 0 0 chr4 18544769 18544806 -165743856 + (GA)n Simple_repeat Simple_repeat 2 38 0 253 78 0 59 chr4 18545181 18545232 -165743430 + MLT1J LTR MaLR 98 145 -366 247 133 22 0 chr4 18545242 18545287 -165743375 + MLT2F LTR ERVL 93 138 -525 196 344 31 31 chr4 18545413 18545509 -165743153 + MIR SINE MIR 104 199 -63 346 353 100 13 chr4 18545736 18545886 -165742776 - MIR3 SINE MIR -15 193 31 1791 160 3 20 chr4 18545892 18546186 -165742476 + AluJo SINE Alu 4 292 -20 276 242 47 62 chr4 18546198 18546326 -165742336 + MIR SINE MIR 93 218 -44 242 73 44 59 chr4 18546414 18546509 -165742153 + (ATTTG)n Simple_repeat Simple_repeat 1 93 0 488 237 51 46 chr4 18546923 18547102 -165741560 + MIR3 SINE MIR 3 182 -63 229 305 0 0 chr4 18547548 18547607 -165741055 + G-rich Low_complexity Low_complexity 1 59 0 478 279 188 10 chr4 18548439 18548636 -165740026 - MIR SINE MIR -10 252 21 2697 140 16 7 chr4 18549144 18549595 -165739067 - L1PA15 LINE L1 -1 6164 5710 477 302 127 24 chr4 18549595 18549800 -165738862 + MIR SINE MIR 20 245 -17 419 135 54 0 chr4 18550046 18550120 -165738542 + MLT1C LTR MaLR 289 366 -101 458 168 53 0 chr4 18550567 18550660 -165738002 - Charlie7 DNA MER1_type -1923 689 592 408 147 0 15 chr4 18550660 18550728 -165737934 - MLT1C LTR MaLR 0 467 401 2541 285 11 25 chr4 18551238 18551965 -165736697 + L1PA15 LINE L1 1 717 -6070 14349 206 35 11 chr4 18552037 18554005 -165734657 + L1PA15 LINE L1 1269 3189 -3627 243 0 0 0 chr4 18554005 18554032 -165734630 + (CAA)n Simple_repeat Simple_repeat 1 27 0 14349 206 35 11 chr4 18554032 18554516 -165734146 + L1PA15 LINE L1 3189 3660 -3156 2445 81 0 0 chr4 18554516 18554824 -165733838 + AluY SINE Alu 1 308 -3 14349 206 35 11 chr4 18554824 18557769 -165730893 + L1PA15 LINE L1 3660 6814 -2 371 259 108 27 chr4 18558018 18558387 -165730275 + MLT1G1 LTR MaLR 119 538 -4 237 303 124 68 chr4 18558421 18558655 -165730007 + L2 LINE L2 2844 3090 -182 427 290 106 57 chr4 18558765 18558980 -165729682 + MIR SINE MIR 10 231 -31 248 319 80 64 chr4 18559042 18559293 -165729369 + L2 LINE L2 3014 3268 -4 211 269 202 0 chr4 18559493 18559597 -165729065 + MIR3 SINE MIR 83 207 -1 260 306 56 56 chr4 18560155 18560299 -165728363 - L2 LINE L2 -306 2966 2823 230 303 104 17 chr4 18560381 18560622 -165728040 + L1ME4a LINE L1 5816 6077 -44 2192 143 0 0 chr4 18560622 18560930 -165727732 - AluSq SINE Alu -5 308 1 225 282 14 0 chr4 18561396 18561467 -165727195 + GA-rich Low_complexity Low_complexity 3 74 0 242 158 49 98 chr4 18561468 18561550 -165727112 + L1MA10 LINE L1 6257 6334 0 * 486 238 61 17 chr4 18561545 18561726 -165726936 + L1M4 LINE L1 4992 5180 -966 2109 146 0 37 chr4 18562089 18562439 -165726223 - MER1B DNA MER1_type 0 337 1 398 257 29 0 chr4 18562677 18562782 -165725880 - MIR SINE MIR -115 147 40 22 0 0 0 chr4 18563214 18563236 -165725426 + AT_rich Low_complexity Low_complexity 1 22 0 2279 109 0 0 chr4 18563900 18564204 -165724458 - AluSx SINE Alu -6 306 3 202 257 71 29 chr4 18564791 18564861 -165723801 + MIR SINE MIR 84 156 -106 504 283 72 6 chr4 18564931 18565097 -165723565 - MIR SINE MIR -4 258 82 194 236 11 39 chr4 18565156 18565338 -165723324 + CT-rich Low_complexity Low_complexity 1 177 0 2169 108 0 3 chr4 18565361 18565648 -165723014 + AluSg SINE Alu 1 286 -24 909 210 119 62 chr4 18565661 18566046 -165722616 + MLT1I LTR MaLR 1 407 -2 329 197 0 0 chr4 18566942 18567013 -165721649 - MER96 DNA MER1_type? 0 175 105 991 325 59 60 chr4 18567014 18567743 -165720919 - L2 LINE L2 -357 2957 2230 989 258 62 11 chr4 18567776 18568129 -165720533 + L1MEc LINE L1 37 407 -5989 3273 200 10 0 chr4 18568432 18569138 -165719524 - L1PA16 LINE L1 -1697 4449 3737 4850 192 9 30 chr4 18569139 18569255 -165719407 + L1PA16 LINE L1 4467 4584 -1582 8101 77 1 0 chr4 18569255 18571124 -165717538 - L1PA7 LINE L1 0 6154 4283 4850 192 9 30 chr4 18571124 18572746 -165715916 + L1PA16 LINE L1 4584 6159 -7 268 267 199 7 chr4 18572831 18572977 -165715685 + L2 LINE L2 1923 2096 -1218 211 321 0 0 chr4 18573058 18573142 -165715520 + L2 LINE L2 2306 2389 -925 1745 252 19 36 chr4 18573935 18574459 -165714203 - LTR40a LTR ERVL 0 519 5 212 389 25 12 chr4 18574481 18574643 -165714019 + L2 LINE L2 2597 2760 -554 335 217 189 9 chr4 18575640 18575746 -165712916 + MIR SINE MIR 67 191 -71 1389 136 62 4 chr4 18575949 18576222 -165712440 + L1MA7 LINE L1 6003 6291 0 256 278 183 9 chr4 18576362 18576477 -165712185 + L2 LINE L2 3129 3263 -9 2289 102 3 3 chr4 18576525 18576828 -165711834 + AluSg SINE Alu 1 303 -7 318 233 49 86 chr4 18576895 18577058 -165711604 - MER112 DNA MER1_type -103 157 1 2303 104 3 0 chr4 18577112 18577419 -165711243 - AluY SINE Alu -3 308 1 183 42 0 0 chr4 18578610 18578634 -165710028 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2389 75 3 7 chr4 18579179 18579484 -165709178 - AluY SINE Alu -7 304 1 211 286 100 0 chr4 18579995 18580065 -165708597 - MIR SINE MIR -97 165 89 306 291 136 0 chr4 18580109 18580219 -165708443 + L2 LINE L2 3148 3272 0 210 171 0 53 chr4 18581820 18581896 -165706766 + (TAA)n Simple_repeat Simple_repeat 1 72 0 247 288 56 8 chr4 18582090 18582215 -165706447 - L1MC5 LINE L1 -168 7793 7663 2226 115 33 36 chr4 18582472 18582837 -165705825 - THE1B LTR MaLR 0 364 1 976 102 23 0 chr4 18583072 18583200 -165705462 - AluSq/x SINE Alu -181 131 1 351 238 198 0 chr4 18583600 18583701 -165704961 - L2 LINE L2 0 3313 3193 241 313 69 62 chr4 18583735 18583879 -165704783 - MIR SINE MIR -22 240 96 1067 313 84 45 chr4 18584094 18584983 -165703679 + L2 LINE L2 2366 3312 -1 371 279 29 29 chr4 18585282 18585418 -165703244 - MIR SINE MIR -57 151 16 499 295 62 36 chr4 18585981 18586174 -165702488 + MIR SINE MIR 13 210 -52 1602 229 9 0 chr4 18586632 18586982 -165701680 + MLT1A1 LTR MaLR 1 353 -12 541 266 118 0 chr4 18587200 18587263 -165701399 + MER112 DNA MER1_type 1 55 -205 254 29 29 0 chr4 18587263 18587298 -165701364 + (CA)n Simple_repeat Simple_repeat 2 37 0 541 266 118 0 chr4 18587298 18587463 -165701199 + MER112 DNA MER1_type 55 256 -4 310 268 28 28 chr4 18588016 18588158 -165700504 + MLT1L LTR MaLR 461 602 -13 224 245 0 0 chr4 18588506 18588559 -165700103 + T-rich Low_complexity Low_complexity 1 53 0 606 333 91 69 chr4 18588580 18589338 -165699324 + L2 LINE L2 1890 2664 -650 582 336 71 28 chr4 18589444 18590010 -165698652 - L1M4 LINE L1 -1706 4440 3851 1252 292 72 12 chr4 18590489 18590904 -165697758 + L2 LINE L2 2497 2936 -378 1162 269 101 20 chr4 18590905 18591311 -165697351 - L1MEc LINE L1 -5919 477 39 600 249 57 62 chr4 18591334 18591543 -165697119 + L2 LINE L2 3105 3312 -1 348 127 0 0 chr4 18592150 18592205 -165696457 + (TG)n Simple_repeat Simple_repeat 2 56 0 576 312 93 23 chr4 18592343 18592644 -165696018 + L2 LINE L2 2992 3313 0 449 346 33 25 chr4 18592744 18592987 -165695675 - L2 LINE L2 -475 2839 2595 5206 240 46 24 chr4 18593177 18594706 -165693956 + L1M4 LINE L1 6 1567 -4975 876 179 4 11 chr4 18594707 18594972 -165693690 + GA-rich Low_complexity Low_complexity 1 263 0 2409 239 119 25 chr4 18595004 18595192 -165693470 + L1M4 LINE L1 1537 1706 -4938 2473 0 0 11 chr4 18595192 18595465 -165693197 - AluYa5 SINE Alu -3 308 39 2409 239 119 25 chr4 18595465 18596785 -165691877 + L1M4 LINE L1 1706 3179 -3465 452 299 102 6 chr4 18597357 18597534 -165691128 + MIR SINE MIR 31 224 -38 716 61 10 0 chr4 18599240 18599338 -165689324 + (TTCCC)n Simple_repeat Simple_repeat 1 99 0 188 360 70 35 chr4 18599386 18599472 -165689190 - L2 LINE L2 -17 3255 3167 282 299 82 48 chr4 18600581 18600728 -165687934 + MIR3 SINE MIR 27 178 -30 3935 193 8 11 chr4 18604805 18605631 -165683031 + L1PA15 LINE L1 5341 6164 -1 300 324 183 0 chr4 18606139 18606281 -165682381 + MIR SINE MIR 21 188 -74 1276 213 95 32 chr4 18606532 18606964 -165681698 + LTR2B LTR ERV1 32 490 0 359 332 87 33 chr4 18606973 18607548 -165681114 - L1MEc LINE L1 -5760 636 31 6071 186 37 29 chr4 18607784 18609639 -165679023 + L1P3 LINE L1 530 2415 -4046 28 0 0 0 chr4 18609943 18609971 -165678691 + AT_rich Low_complexity Low_complexity 1 28 0 310 236 0 0 chr4 18610154 18610209 -165678453 - L2 LINE L2 -4 3268 3214 343 0 0 0 chr4 18610212 18610252 -165678410 + THE1B LTR MaLR 1 40 -324 1409 131 5 5 chr4 18610254 18610476 -165678186 + THE1B LTR MaLR 11 232 -132 1194 213 49 0 chr4 18610476 18610720 -165677942 + L1PA13 LINE L1 450 705 -6082 899 257 66 12 chr4 18612796 18613037 -165675625 + MIR SINE MIR 9 262 0 32 103 0 0 chr4 18613098 18613214 -165675448 + AT_rich Low_complexity Low_complexity 1 116 0 246 322 81 0 chr4 18614939 18615026 -165673636 - MIR3 SINE MIR -28 180 87 2219 98 0 28 chr4 18615310 18615627 -165673035 + AluSx SINE Alu 2 309 -3 5294 210 20 2 chr4 18615632 18616829 -165671833 + L1P LINE L1 3178 4395 -1751 24 77 0 0 chr4 18617488 18617540 -165671122 + AT_rich Low_complexity Low_complexity 1 52 0 6550 81 14 0 chr4 18617616 18618727 -165669935 - L1PA7 LINE L1 -9 6145 5031 1087 207 43 29 chr4 18618727 18619075 -165669587 - L1 LINE L1 -865 5281 4929 509 283 49 101 chr4 18619500 18619786 -165668876 + L2 LINE L2 3042 3312 -1 1340 138 17 0 chr4 18619827 18620066 -165668596 - L1MA7 LINE L1 -3 6288 6046 6837 71 7 16 chr4 18620075 18621722 -165666940 - L1PA8 LINE L1 -3 6169 4529 382 350 24 0 chr4 18623158 18623281 -165665381 - MER5A DNA MER1_type -3 186 61 2360 101 0 13 chr4 18623355 18623662 -165665000 + AluSx SINE Alu 1 303 -9 181 342 105 9 chr4 18625142 18625256 -165663406 + MIR SINE MIR 17 141 -67 258 196 149 56 chr4 18625427 18625534 -165663128 + MIR3 SINE MIR 89 205 -3 315 0 0 0 chr4 18625981 18626016 -165662646 + (GA)n Simple_repeat Simple_repeat 2 36 0 253 78 0 59 chr4 18626391 18626442 -165662220 + MLT1J LTR MaLR 98 145 -366 247 133 22 0 chr4 18626452 18626497 -165662165 + MLT2F LTR ERVL 93 138 -525 196 344 31 31 chr4 18626623 18626719 -165661943 + MIR SINE MIR 104 199 -63 346 353 100 13 chr4 18626946 18627096 -165661566 - MIR3 SINE MIR -15 193 31 1085 219 4 25 chr4 18627102 18627339 -165661323 + AluJb SINE Alu 4 235 -77 971 283 134 31 chr4 18677372 18677885 -165610777 - L2 LINE L2 -422 2892 2327 8142 22 0 0 chr4 18678234 18679192 -165609470 - L1PA4 LINE L1 -5 6150 5190 320 0 25 0 chr4 18679784 18679824 -165608838 + (TC)n Simple_repeat Simple_repeat 2 42 0 2554 177 6 47 chr4 18679832 18680302 -165608360 - MLT2B2 LTR ERVL -64 451 1 261 308 70 42 chr4 18680305 18680488 -165608174 - L2 LINE L2 -181 3091 2886 1732 172 0 26 chr4 18680488 18680790 -165607872 + AluJo SINE Alu 1 294 -18 261 308 70 42 chr4 18680790 18680889 -165607773 - L2 LINE L2 -386 2886 2791 221 300 0 0 chr4 18681651 18681731 -165606931 + MIR SINE MIR 183 262 0 222 62 0 0 chr4 18681918 18681950 -165606712 + (TG)n Simple_repeat Simple_repeat 1 32 0 253 286 44 22 chr4 18682024 18682123 -165606539 + MLT1I LTR MaLR 44 133 -276 239 350 117 25 chr4 18682542 18682705 -165605957 - MIR3 SINE MIR -21 187 10 1096 141 12 0 chr4 18683700 18683870 -165604792 - AluSg/x SINE Alu -11 301 130 1387 160 48 111 chr4 18684071 18684403 -165604259 + AluJo SINE Alu 1 311 -1 1335 198 171 56 chr4 18684703 18685153 -165603509 - MLT1D LTR MaLR -3 502 1 558 209 87 51 chr4 18685588 18685842 -165602820 + L1MC5 LINE L1 7644 7906 -55 24 53 0 0 chr4 18686088 18686126 -165602536 + AT_rich Low_complexity Low_complexity 1 38 0 482 228 117 21 chr4 18686505 18686650 -165602012 - MIR SINE MIR -38 224 66 995 181 98 5 chr4 18686735 18686940 -165601722 + AluJb SINE Alu 2 225 -87 7588 53 3 3 chr4 18686952 18687898 -165600764 + L1PA7 LINE L1 5209 6154 0 548 114 13 0 chr4 18688711 18688790 -165599872 + MADE1 DNA Mariner 1 80 0 567 283 148 70 chr4 18688790 18689106 -165599556 - MLT1G1 LTR MaLR -71 484 130 1655 223 128 38 chr4 18689106 18689145 -165599517 - MLT2B1 LTR ERVL 0 520 486 441 54 0 0 chr4 18689145 18689201 -165599461 + (TG)n Simple_repeat Simple_repeat 2 57 0 1655 223 128 38 chr4 18689201 18689636 -165599026 - MLT2B1 LTR ERVL -34 486 3 567 283 148 70 chr4 18689636 18689724 -165598938 - MLT1G1 LTR MaLR -425 130 50 267 342 24 13 chr4 18689771 18689888 -165598774 + MER5A DNA MER1_type 59 169 -9 385 262 106 14 chr4 18690127 18690268 -165598394 - L1MC3 LINE L1 -3 7782 7629 216 174 0 82 chr4 18690322 18690420 -165598242 + (TATAA)n Simple_repeat Simple_repeat 4 93 0 1694 209 48 15 chr4 18690421 18690727 -165597935 - L1MD3 LINE L1 -162 7833 7510 210 118 0 0 chr4 18690727 18690761 -165597901 + (CATAT)n Simple_repeat Simple_repeat 4 37 0 1694 209 48 15 chr4 18690761 18690851 -165597811 - L1MD3 LINE L1 -485 7510 7424 578 202 28 0 chr4 18690851 18690960 -165597702 - MLT1F1 LTR MaLR -420 147 36 24 0 0 0 chr4 18691356 18691380 -165597282 + AT_rich Low_complexity Low_complexity 1 24 0 257 300 25 0 chr4 18692182 18692262 -165596400 - MIR SINE MIR -16 246 165 863 250 111 33 chr4 18692267 18692627 -165596035 + MLT1I LTR MaLR 19 406 -3 251 263 100 25 chr4 18692627 18692707 -165595955 - MIR SINE MIR -68 140 55 430 267 192 37 chr4 18693208 18693798 -165594864 - L2 LINE L2 -5 3308 2611 514 211 145 18 chr4 18694185 18694351 -165594311 - MER53 DNA DNA -2 187 1 1728 213 9 81 chr4 18695581 18696027 -165592635 - MLT2D LTR ERVL 0 414 1 297 145 0 81 chr4 18696067 18696129 -165592533 - MLT2C1 LTR ERVL 0 663 464 1112 213 70 51 chr4 18696188 18696530 -165592132 - MLT2C1 LTR ERVL -41 423 1 1919 165 43 6 chr4 18696538 18696866 -165591796 - MER2 DNA MER2_type 0 345 6 384 319 39 68 chr4 18697042 18697115 -165591547 - MIR SINE MIR -3 259 185 1981 157 3 0 chr4 18697115 18697415 -165591247 - AluJb SINE Alu -10 302 2 384 319 39 68 chr4 18697415 18697548 -165591114 - MIR SINE MIR -77 185 59 297 229 19 102 chr4 18699418 18699556 -165589106 - MIR SINE MIR -62 146 57 * 497 242 33 26 chr4 18699554 18699707 -165588955 - MIR SINE MIR -94 168 15 191 306 97 0 chr4 18699888 18699950 -165588712 - L2 LINE L2 0 3272 3205 727 283 146 45 chr4 18699970 18700745 -165587917 + L2 LINE L2 2447 3311 -2 201 261 22 0 chr4 18700760 18700806 -165587856 - L2 LINE L2 -94 3219 3173 255 279 13 13 chr4 18701084 18701163 -165587499 - L3 LINE CR1 -235 1342 1264 338 205 111 17 chr4 18701164 18701281 -165587381 - L1ME4a LINE L1 -18 6103 5976 508 285 229 12 chr4 18701383 18701706 -165586956 - L2 LINE L2 -453 2861 2469 350 294 59 49 chr4 18702646 18702811 -165585851 - MIR SINE MIR -11 251 82 1697 181 114 18 chr4 18702811 18703143 -165585519 + MLT1A1 LTR MaLR 2 365 0 350 294 59 49 chr4 18703143 18703181 -165585481 - MIR SINE MIR -180 82 46 243 324 94 55 chr4 18703401 18703710 -165584952 - L2 LINE L2 -8 3264 2944 25 51 0 0 chr4 18704029 18704068 -165584594 + AT_rich Low_complexity Low_complexity 1 39 0 336 24 0 0 chr4 18704150 18704191 -165584471 + (TG)n Simple_repeat Simple_repeat 2 42 0 719 263 0 13 chr4 18704192 18704344 -165584318 - FRAM SINE Alu -16 150 1 364 331 123 19 chr4 18706506 18706715 -165581947 + MIR SINE MIR 17 250 -12 1719 251 126 39 chr4 18706829 18707368 -165581294 - MLT1E LTR MaLR 0 593 8 213 313 148 36 chr4 18707372 18707676 -165580986 - L2 LINE L2 -647 2667 2330 228 248 95 38 chr4 18708303 18708408 -165580254 - MLT1H LTR MaLR 0 549 439 2200 84 28 3 chr4 18708561 18708847 -165579815 - AluY SINE Alu -18 293 1 242 267 30 30 chr4 18708876 18708977 -165579685 - MLT1H LTR MaLR -375 174 74 * 635 276 28 39 chr4 18708972 18709153 -165579509 - MER8 DNA MER2_type -60 179 1 2205 96 3 13 chr4 18709321 18709624 -165579038 - AluY SINE Alu -11 300 1 1281 218 24 49 chr4 18709867 18710256 -165578406 - MLT2C1 LTR ERVL -2 412 13 232 263 66 13 chr4 18710285 18710361 -165578301 + MIR SINE MIR 117 196 -66 212 238 111 16 chr4 18710849 18710912 -165577750 + MIR SINE MIR 85 153 -55 327 339 0 0 chr4 18710916 18711046 -165577616 + MER94 DNA DNA 4 133 -1 185 161 0 0 chr4 18711091 18711122 -165577540 - L2 LINE L2 -16 3256 3226 204 40 0 0 chr4 18712019 18712044 -165576618 + (TG)n Simple_repeat Simple_repeat 2 26 0 556 217 6 6 chr4 18712063 18712238 -165576424 + (TG)n Simple_repeat Simple_repeat 2 176 0 1277 244 56 44 chr4 18713000 18713430 -165575232 + MLT1C LTR MaLR 17 451 -16 967 229 14 36 chr4 18713700 18713923 -165574739 - MER20 DNA MER1_type -1 218 1 2730 78 91 10 chr4 18714041 18714401 -165574261 + MLT2A1 LTR ERVL 16 412 -32 216 0 0 0 chr4 18714401 18714425 -165574237 + (TA)n Simple_repeat Simple_repeat 2 25 0 2730 78 91 10 chr4 18714425 18714461 -165574201 + MLT2A1 LTR ERVL 412 444 0 320 287 133 0 chr4 18714885 18715028 -165573634 - MER103 DNA DNA -3 163 2 244 347 58 0 chr4 18715215 18715336 -165573326 + MER102a DNA MER1_type 177 304 -26 345 129 0 198 chr4 18715850 18715966 -165572696 + L1MA9 LINE L1 6182 6274 -38 786 295 63 31 chr4 18717458 18718019 -165570643 - L2 LINE L2 -31 3282 2708 182 315 103 48 chr4 18718110 18718256 -165570406 + L2 LINE L2 3111 3264 -8 31 26 0 0 chr4 18719676 18719714 -165568948 + AT_rich Low_complexity Low_complexity 1 38 0 222 318 0 15 chr4 18719849 18719915 -165568747 - MIR SINE MIR -120 142 78 258 250 0 0 chr4 18720210 18720282 -165568380 + CT-rich Low_complexity Low_complexity 1 72 0 285 248 64 46 chr4 18721476 18721585 -165567077 + MIR SINE MIR 20 130 -78 1040 303 96 12 chr4 18721828 18722244 -165566418 - L2 LINE L2 -4 3309 2859 1556 186 17 24 chr4 18724155 18724446 -165564216 + AluJo SINE Alu 1 289 -23 249 33 0 0 chr4 18725571 18725601 -165563061 + (TCCA)n Simple_repeat Simple_repeat 1 30 0 193 378 112 0 chr4 18725602 18725700 -165562962 - L2 LINE L2 -6 3266 3158 217 296 89 45 chr4 18726266 18726445 -165562217 + MIR SINE MIR 56 242 -20 796 287 16 12 chr4 18726582 18726836 -165561826 + MIR SINE MIR 2 256 -6 219 385 18 0 chr4 18727544 18727653 -165561009 + MIR SINE MIR 43 153 -55 290 305 75 80 chr4 18727680 18727880 -165560782 - MIR SINE MIR -18 244 46 207 204 0 0 chr4 18727996 18728045 -165560617 + CT-rich Low_complexity Low_complexity 2 50 0 245 296 108 54 chr4 18728149 18728335 -165560327 + L2 LINE L2 3117 3312 -1 247 339 133 14 chr4 18728369 18728587 -165560075 + L3 LINE CR1 1311 1554 -23 186 246 277 0 chr4 18728644 18728709 -165559953 - L2 LINE L2 -2 3270 3188 350 312 87 35 chr4 18728739 18728912 -165559750 - MIR SINE MIR -27 235 54 206 341 37 30 chr4 18729517 18729582 -165559080 + MIR3 SINE MIR 25 88 -120 2043 196 25 6 chr4 18729582 18729940 -165558722 - MLT1A1 LTR MaLR 0 365 1 206 341 37 30 chr4 18729940 18730009 -165558653 + MIR3 SINE MIR 88 160 -48 297 353 45 7 chr4 18730809 18730976 -165557686 + MIR SINE MIR 64 236 -26 268 360 44 26 chr4 18731393 18731507 -165557155 - L2 LINE L2 -5 3267 3152 268 230 30 60 chr4 18731824 18731924 -165556738 - MIR SINE MIR -112 150 54 271 304 68 48 chr4 18732578 18732828 -165555834 + L2 LINE L2 2507 2761 -553 251 347 8 16 chr4 18732983 18733107 -165555555 + L2 LINE L2 2942 3064 -208 2443 93 3 0 chr4 18733527 18733837 -165554825 + AluSp SINE Alu 1 311 -2 532 329 82 59 chr4 18733892 18734676 -165553986 + L2 LINE L2 563 1364 -1950 2471 58 0 7 chr4 18734778 18735073 -165553589 + AluY SINE Alu 1 293 -18 309 333 26 19 chr4 18735557 18735713 -165552949 + L2 LINE L2 2506 2662 -652 938 142 321 28 chr4 18735736 18735847 -165552815 - Tigger3b DNA MER2_type -1797 1232 1155 2853 107 5 0 chr4 18735847 18736220 -165552442 + THE1C LTR MaLR 1 375 0 938 142 321 28 chr4 18736220 18736326 -165552336 - Tigger3b DNA MER2_type -1874 1155 951 968 106 38 0 chr4 18736334 18736466 -165552196 + L1PA11 LINE L1 6034 6170 -4 189 107 0 0 chr4 18736567 18736595 -165552067 + (TATATG)n Simple_repeat Simple_repeat 1 28 0 264 239 23 23 chr4 18736596 18736684 -165551978 - L1MC4 LINE L1 -1341 6701 6614 237 219 0 83 chr4 18736611 18736707 -165551955 + L1MC4 LINE L1 6615 6702 -1340 * 1413 98 0 25 chr4 18736707 18736910 -165551752 - AluY SINE Alu -113 198 1 4809 132 76 35 chr4 18737291 18737354 -165551308 - Tigger3b DNA MER2_type -2080 948 889 203 61 30 0 chr4 18737354 18737387 -165551275 + (TGAG)n Simple_repeat Simple_repeat 1 34 0 4809 132 76 35 chr4 18737387 18737474 -165551188 - Tigger3b DNA MER2_type -2139 889 807 2178 119 0 17 chr4 18737474 18737769 -165550893 + AluSx SINE Alu 1 290 -22 4809 132 76 35 chr4 18737769 18738321 -165550341 - Tigger3b DNA MER2_type -2221 807 197 2238 117 0 13 chr4 18738321 18738630 -165550032 - AluSq SINE Alu -8 305 1 4809 132 76 35 chr4 18738630 18738836 -165549826 - Tigger3b DNA MER2_type -2831 197 1 2440 118 22 27 chr4 18738864 18739230 -165549432 + THE1B LTR MaLR 1 364 0 12011 95 21 3 chr4 18739230 18740781 -165547881 + THE1B-int LTR MaLR 1 1580 0 978 138 13 7 chr4 18740799 18740951 -165547711 + THE1B LTR MaLR 212 364 0 1318 278 74 15 chr4 18740951 18741490 -165547172 + L2 LINE L2 2731 3313 0 198 304 18 0 chr4 18741536 18741592 -165547070 - L2 LINE L2 0 3313 3257 316 202 31 10 chr4 18741818 18741915 -165546747 - MIR3 SINE MIR -22 186 86 545 317 49 32 chr4 18742682 18742928 -165545734 - MIR SINE MIR -10 252 3 276 246 92 0 chr4 18742928 18742984 -165545678 - L2 LINE L2 -42 3230 3169 2824 276 137 22 chr4 18743320 18744473 -165544189 - L2 LINE L2 -1771 1543 258 318 311 51 50 chr4 18744732 18744986 -165543676 + L2 LINE L2 2798 3053 -219 195 339 119 38 chr4 18745277 18745596 -165543066 + L2 LINE L2 2016 2360 -954 232 187 41 0 chr4 18745608 18745731 -165542931 + (TA)n Simple_repeat Simple_repeat 2 129 0 318 250 21 21 chr4 18745755 18745851 -165542811 + L1MC4 LINE L1 6610 6705 -1337 283 336 259 21 chr4 18746011 18746386 -165542276 + L2 LINE L2 2807 3270 -2 1531 140 19 30 chr4 18746397 18746661 -165542001 - Tigger2 DNA MER2_type -10 2708 2448 38 22 0 0 chr4 18746690 18746735 -165541927 + AT_rich Low_complexity Low_complexity 1 45 0 4571 125 24 36 chr4 18746741 18747508 -165541154 - Tigger2 DNA MER2_type -1961 757 1 2637 50 0 0 chr4 18747989 18748289 -165540373 + AluY SINE Alu 1 300 -11 279 206 27 41 chr4 18748307 18748380 -165540282 - MIR SINE MIR -108 154 83 2153 101 7 0 chr4 18748685 18748972 -165539690 + AluSq SINE Alu 1 289 -24 26 30 0 0 chr4 18750518 18750551 -165538111 + AT_rich Low_complexity Low_complexity 1 33 0 186 43 0 0 chr4 18750902 18750925 -165537737 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 595 290 75 23 chr4 18750995 18751209 -165537453 + MIR SINE MIR 20 244 -18 413 167 0 12 chr4 18751258 18751342 -165537320 + CT-rich Low_complexity Low_complexity 4 86 0 426 195 0 0 chr4 18751345 18751427 -165537235 - Cheshire DNA MER1_type -266 2154 2073 287 136 99 0 chr4 18751402 18751483 -165537179 - Cheshire DNA MER1_type -2265 155 67 * 1609 180 19 60 chr4 18751490 18751736 -165536926 - MLT1A1 LTR MaLR -12 353 125 2771 98 20 3 chr4 18751736 18752092 -165536570 + THE1B LTR MaLR 3 364 0 1609 180 19 60 chr4 18752092 18752211 -165536451 - MLT1A1 LTR MaLR -240 125 3 424 74 0 0 chr4 18752231 18752285 -165536377 + MER57A LTR ERV1 1 54 -349 1917 123 57 92 chr4 18752285 18752674 -165535988 - THE1C LTR MaLR 0 375 1 1640 77 5 14 chr4 18752674 18752895 -165535767 - THE1C-int LTR MaLR 0 1580 1362 1022 198 80 0 chr4 18752909 18753146 -165535516 + Cheshire DNA MER1_type 130 2419 -1 1834 228 42 5 chr4 18754203 18754585 -165534077 - MSTD LTR MaLR 0 396 1 528 245 0 0 chr4 18754629 18755111 -165533551 + (CA)n Simple_repeat Simple_repeat 1 482 0 408 316 102 27 chr4 18755218 18755443 -165533219 - MIR SINE MIR -19 243 2 210 216 0 0 chr4 18755806 18755880 -165532782 + (CA)n Simple_repeat Simple_repeat 2 75 0 417 300 14 38 chr4 18756348 18756558 -165532104 + MIR SINE MIR 58 262 0 230 325 125 0 chr4 18756790 18756870 -165531792 - L2 LINE L2 -19 3253 3164 12955 179 7 10 chr4 18756870 18759959 -165528703 - L1P3 LINE L1 -2782 3679 582 14824 26 1 0 chr4 18759959 18762367 -165526295 + L1PA3 LINE L1 3746 6155 0 12955 179 7 10 chr4 18762367 18762946 -165525716 - L1P3 LINE L1 -5879 582 3 366 263 75 15 chr4 18762993 18763126 -165525536 + MIR SINE MIR 40 180 -82 295 334 33 25 chr4 18763401 18763566 -165525096 + MIR SINE MIR 19 180 -28 191 245 38 0 chr4 18764224 18764277 -165524385 + MIR SINE MIR 187 241 -21 371 213 43 150 chr4 18764748 18765002 -165523660 - L2 LINE L2 -6 3307 3081 1012 152 129 5 chr4 18765008 18765225 -165523437 - L1MC2 LINE L1 -2 6342 6099 244 0 0 0 chr4 18765234 18765261 -165523401 + (TTTTG)n Simple_repeat Simple_repeat 1 165 0 2266 82 0 4 chr4 18765261 18765540 -165523122 - AluSc SINE Alu -31 278 1 257 277 176 48 chr4 18765700 18765989 -165522673 + LTR16C LTR ERVL 151 476 -15 345 269 99 50 chr4 18765991 18766132 -165522530 + MIR SINE MIR 114 261 -1 411 309 22 29 chr4 18766189 18766328 -165522334 - MIR SINE MIR -65 197 60 266 279 58 39 chr4 18766389 18766493 -165522169 - MIR SINE MIR -71 137 32 607 209 43 139 chr4 18767389 18767647 -165521015 - MIR SINE MIR -19 243 11 253 286 42 67 chr4 18767651 18767770 -165520892 - MIR3 SINE MIR -23 185 70 213 284 23 0 chr4 18768140 18768228 -165520434 + (TG)n Simple_repeat Simple_repeat 2 91 0 247 397 116 29 chr4 18768689 18768931 -165519731 - L2 LINE L2 0 3272 3010 21 0 0 0 chr4 18770600 18770621 -165518041 + AT_rich Low_complexity Low_complexity 1 21 0 437 292 76 67 chr4 18770978 18771310 -165517352 + L1MEc LINE L1 1412 1801 -775 199 403 0 0 chr4 18772019 18772091 -165516571 + L2 LINE L2 3134 3205 -67 211 291 51 13 chr4 18772288 18772367 -165516295 + L2 LINE L2 3176 3257 -56 221 297 102 47 chr4 18774532 18774660 -165514002 - L2 LINE L2 -1 3271 3137 287 381 114 19 chr4 18774897 18775275 -165513387 - L2 LINE L2 -650 2664 2251 298 276 13 0 chr4 18775318 18775394 -165513268 - LTR16C LTR ERVL -222 269 193 233 242 30 61 chr4 18775602 18775668 -165512994 - L2 LINE L2 0 3272 3209 2035 120 10 29 chr4 18776466 18776774 -165511888 + AluSx SINE Alu 1 302 -10 201 269 260 39 chr4 18776885 18776989 -165511673 + MIR SINE MIR 9 135 -127 355 353 53 38 chr4 18777054 18777394 -165511268 + L2 LINE L2 1550 1894 -1420 470 261 36 26 chr4 18778292 18778487 -165510175 - HAL1 LINE L1 -78 2429 2233 324 179 0 0 chr4 18778540 18778607 -165510055 - MER116 DNA Mariner 0 80 14 32 43 0 0 chr4 18778742 18778788 -165509874 + AT_rich Low_complexity Low_complexity 1 46 0 2239 130 11 0 chr4 18778788 18779141 -165509521 - L1PB4 LINE L1 -7 6852 6496 198 0 0 0 chr4 18779141 18779163 -165509499 + (TG)n Simple_repeat Simple_repeat 2 23 0 207 204 0 0 chr4 18779236 18779280 -165509382 + (CATA)n Simple_repeat Simple_repeat 3 46 0 7445 217 27 90 chr4 18779282 18781053 -165507609 - L1PB4 LINE L1 -367 6492 4611 397 57 0 0 chr4 18781053 18781106 -165507556 - MADE1 DNA Mariner 0 80 28 7445 217 27 90 chr4 18781106 18781281 -165507381 - L1PB4 LINE L1 -2248 4611 4427 369 94 0 47 chr4 18781281 18781345 -165507317 - MADE1 DNA Mariner -17 63 3 7445 217 27 90 chr4 18781345 18783183 -165505479 - L1PB4 LINE L1 -2432 4427 2848 253 266 110 0 chr4 18783253 18783362 -165505300 - L1PB4 LINE L1 -4004 2845 2725 687 254 106 72 chr4 18783399 18783751 -165504911 - L1PB4 LINE L1 -525 2685 2311 1748 217 43 71 chr4 18783751 18784285 -165504377 - MLT2B1 LTR ERVL 0 520 2 687 254 106 72 chr4 18784285 18784404 -165504258 - L1PB4 LINE L1 -899 2311 2198 342 354 186 7 chr4 18784414 18785001 -165503661 - L1PB4 LINE L1 -1706 1504 813 1751 210 36 20 chr4 18785007 18785397 -165503265 + MSTD LTR MaLR 1 396 0 5467 243 87 34 chr4 18785399 18787046 -165501616 + MSTD-int LTR MaLR 2 1735 0 1145 199 120 38 chr4 18787048 18787236 -165501426 + MSTD LTR MaLR 4 226 -170 1931 150 0 43 chr4 18787236 18787562 -165501100 - AluSx SINE Alu 0 312 1 1145 199 120 38 chr4 18787562 18787664 -165500998 + MSTD LTR MaLR 226 318 -78 242 256 70 0 chr4 18787665 18787751 -165500911 - L1PB4 LINE L1 -2403 807 716 24 32 0 0 chr4 18788137 18788168 -165500494 + AT_rich Low_complexity Low_complexity 1 31 0 662 308 79 31 chr4 18788422 18788902 -165499760 - MLT1J LTR MaLR -8 503 1 41 48 0 0 chr4 18789512 18789574 -165499088 + AT_rich Low_complexity Low_complexity 1 62 0 513 266 118 20 chr4 18789699 18789996 -165498666 - LTR16A LTR ERVL -6 444 119 437 289 53 11 chr4 18790387 18790558 -165498104 + MIR SINE MIR 19 205 -3 195 301 55 0 chr4 18791748 18791821 -165496841 - L2 LINE L2 0 3313 3237 1143 273 101 67 chr4 18792117 18792682 -165495980 - MER45C DNA AcHobo -369 584 1 226 339 120 16 chr4 18793107 18793290 -165495372 + L2 LINE L2 2170 2371 -943 190 175 50 0 chr4 18793384 18793424 -165495238 - L2 LINE L2 -10 3262 3221 500 236 9 155 chr4 18793460 18793711 -165494951 - MIR SINE MIR -19 243 31 1882 135 162 5 chr4 18794065 18794435 -165494227 + MSTA LTR MaLR 1 428 0 333 262 98 11 chr4 18795363 18795546 -165493116 + MLT1K LTR MaLR 376 574 -14 1901 162 0 16 chr4 18795556 18795864 -165492798 + AluJb SINE Alu 1 303 -9 259 151 41 27 chr4 18796321 18796394 -165492268 - L1PA16 LINE L1 0 6166 6093 2080 142 30 38 chr4 18796512 18796879 -165491783 + THE1B LTR MaLR 1 364 0 446 150 0 0 chr4 18797148 18797228 -165491434 - MADE1 DNA Mariner 0 80 1 553 211 0 0 chr4 18797977 18798072 -165490590 - FLAM_A SINE Alu -20 122 28 2592 116 52 10 chr4 18798143 18798550 -165490112 + MSTA LTR MaLR 5 428 0 268 277 75 50 chr4 18798684 18798701 -165489961 + MIR SINE MIR 59 74 -188 1671 236 20 0 chr4 18798701 18799057 -165489605 + MLT1A1 LTR MaLR 3 365 0 268 277 75 50 chr4 18799057 18799198 -165489464 + MIR SINE MIR 74 221 -41 1551 220 96 25 chr4 18799210 18799646 -165489016 - MLT1C LTR MaLR 0 467 1 294 73 0 0 chr4 18800861 18800902 -165487760 + (CA)n Simple_repeat Simple_repeat 1 41 0 428 302 48 8 chr4 18801111 18801237 -165487425 + L3 LINE CR1 1361 1491 -86 21 0 0 0 chr4 18801239 18801260 -165487402 + AT_rich Low_complexity Low_complexity 1 21 0 5492 113 5 2 chr4 18801260 18802131 -165486531 - L1PB1 LINE L1 -2 6149 5277 203 380 38 0 chr4 18802148 18802227 -165486435 - L2 LINE L2 -4 3268 3187 324 291 96 94 chr4 18802798 18803234 -165485428 - MLT1J2 LTR MaLR -13 437 1 561 327 5 53 chr4 18804513 18804525 -165484137 + MIR3 SINE MIR 5 16 -192 2822 201 7 7 chr4 18804525 18805083 -165483579 + MER74A LTR ERVL 1 558 0 561 327 5 53 chr4 18805083 18805278 -165483384 + MIR3 SINE MIR 16 202 -6 387 283 43 0 chr4 18805335 18805427 -165483235 - L2 LINE L2 -9 3263 3168 1082 164 23 9 chr4 18807442 18807656 -165481006 - Tigger1 DNA MER2_type 0 2418 2202 683 189 0 16 chr4 18807652 18807779 -165480883 - Tigger1 DNA MER2_type -2267 151 27 * 864 206 11 16 chr4 18808177 18808361 -165480301 + MER5A DNA MER1_type 3 185 -4 491 322 149 32 chr4 18808790 18809395 -165479267 - L2 LINE L2 -77 3236 2565 799 155 0 63 chr4 18809812 18809954 -165478708 - FLAM_C SINE Alu 0 133 1 1835 152 46 30 chr4 18810183 18810552 -165478110 + THE1C LTR MaLR 1 375 0 6297 133 9 41 chr4 18810552 18811685 -165476977 + THE1C-int LTR MaLR 1 1097 -483 1097 160 176 46 chr4 18811692 18811998 -165476664 + THE1B LTR MaLR 15 360 -4 232 121 69 52 chr4 18812010 18812068 -165476594 + L1ME1 LINE L1 6092 6150 -16 1076 288 199 18 chr4 18812200 18812864 -165475798 - L2 LINE L2 -1496 1818 1035 1360 195 66 31 chr4 18812900 18813249 -165475413 + MLT1A2 LTR MaLR 1 361 -13 767 308 63 61 chr4 18813263 18813688 -165474974 + L2 LINE L2 2888 3313 0 233 284 34 23 chr4 18814712 18814800 -165473862 - L2 LINE L2 -5 3267 3179 208 357 9 45 chr4 18815146 18815258 -165473404 + MIR SINE MIR 37 144 -64 744 221 6 18 chr4 18816383 18816546 -165472116 + MIR SINE MIR 74 234 -28 2156 97 0 0 chr4 18816596 18816863 -165471799 + AluSx SINE Alu 38 304 -8 649 260 85 0 chr4 18817401 18817578 -165471084 + MIR SINE MIR 71 262 0 38 68 0 0 chr4 18817581 18817654 -165471008 + AT_rich Low_complexity Low_complexity 1 73 0 2455 44 30 0 chr4 18818040 18818335 -165470327 + AluY SINE Alu 1 304 -7 3132 135 18 71 chr4 18818950 18819429 -165469233 - L1MB7 LINE L1 0 6184 5748 2512 68 0 3 chr4 18819429 18819739 -165468923 - AluY SINE Alu -2 309 1 3132 135 18 71 chr4 18819739 18819918 -165468744 - L1MB7 LINE L1 -436 5748 5561 194 311 48 99 chr4 18819967 18820151 -165468511 - L2 LINE L2 -829 2485 2320 1977 175 7 0 chr4 18820151 18820460 -165468202 - AluSx SINE Alu -1 311 1 194 311 48 99 chr4 18820460 18820568 -165468094 - L2 LINE L2 -994 2320 2208 359 265 0 31 chr4 18821004 18821102 -165467560 + L2 LINE L2 3213 3307 -6 2506 60 3 0 chr4 18821197 18821499 -165467163 + AluY SINE Alu 1 303 -8 390 232 36 0 chr4 18821636 18821748 -165466914 + MER103 DNA DNA 8 123 -43 245 233 0 0 chr4 18821797 18821840 -165466822 + (CGTG)n Simple_repeat Simple_repeat 1 43 0 218 326 109 14 chr4 18822776 18822914 -165465748 + MIR SINE MIR 103 253 -9 263 164 73 0 chr4 18823178 18823233 -165465429 - MLT1K LTR MaLR 0 588 530 2159 137 0 0 chr4 18823249 18823562 -165465100 + AluSq SINE Alu 1 313 0 368 322 15 49 chr4 18823678 18823883 -165464779 - MLT1K LTR MaLR -166 422 225 316 333 164 12 chr4 18824285 18824450 -165464212 - MIR3 SINE MIR 0 208 19 239 298 60 71 chr4 18826005 18826173 -165462489 + MIR SINE MIR 19 184 -78 645 236 111 10 chr4 18826203 18826411 -165462251 + MIR SINE MIR 21 249 -13 4280 248 62 41 chr4 18827461 18830893 -165457769 + L1MA9 LINE L1 357 3436 -2598 225 236 18 0 chr4 18830894 18830949 -165457713 + (TA)n Simple_repeat Simple_repeat 1 56 0 314 290 0 21 chr4 18830949 18831042 -165457620 + L1MC4 LINE L1 6613 6703 -1339 432 279 0 0 chr4 18831049 18831221 -165457441 + (TA)n Simple_repeat Simple_repeat 1 172 0 245 315 0 11 chr4 18831224 18831402 -165457260 + (TATG)n Simple_repeat Simple_repeat 2 177 0 241 318 0 0 chr4 18831409 18831475 -165457187 + (TATATG)n Simple_repeat Simple_repeat 3 68 0 321 309 0 0 chr4 18831481 18831656 -165457006 + (TA)n Simple_repeat Simple_repeat 2 176 0 7661 183 32 23 chr4 18831680 18833998 -165454664 + L1MA9 LINE L1 3467 5796 -404 1064 293 77 9 chr4 18833998 18834677 -165453985 - L2 LINE L2 -22 3291 2560 296 324 163 76 chr4 18834685 18835017 -165453645 + L3 LINE CR1 589 891 -686 2286 114 0 0 chr4 18835017 18835324 -165453338 + AluSx SINE Alu 1 307 -5 296 324 163 76 chr4 18835324 18835581 -165453081 + L3 LINE CR1 891 1229 -348 352 68 0 108 chr4 18835622 18835696 -165452966 + MER41B LTR ERV1 482 547 -88 365 333 86 20 chr4 18835707 18835905 -165452757 + L3 LINE CR1 1266 1476 -101 197 362 29 0 chr4 18838275 18838344 -165450318 + L2 LINE L2 3201 3271 -1 480 301 54 46 chr4 18839770 18840009 -165448653 + MIR SINE MIR 22 262 0 320 295 36 72 chr4 18840002 18840141 -165448521 - MIR SINE MIR -108 154 21 * 2129 127 7 0 chr4 18840945 18841245 -165447417 + AluSq SINE Alu 1 302 -11 255 61 0 0 chr4 18841845 18841878 -165446784 + (TC)n Simple_repeat Simple_repeat 2 34 0 252 184 0 118 chr4 18841881 18841957 -165446705 - U6 snRNA snRNA -3 104 38 419 174 0 0 chr4 18841961 18842030 -165446632 - U6 snRNA snRNA -37 70 2 710 328 36 4 chr4 18842209 18842462 -165446200 - MIR SINE MIR -1 261 1 3218 190 36 88 chr4 18842733 18844105 -165444557 - L1ME2 LINE L1 -11 6153 4843 352 199 55 75 chr4 18844154 18844300 -165444362 - L1ME2 LINE L1 -2290 3856 3714 185 323 21 43 chr4 18844791 18844884 -165443778 + L3 LINE CR1 1473 1563 -14 409 376 41 5 chr4 18845353 18845547 -165443115 - MIR3 SINE MIR -4 204 4 1009 285 36 18 chr4 18845885 18845968 -165442694 - LTR16C LTR ERVL -7 484 404 1114 181 123 77 chr4 18845968 18846317 -165442345 - MLT1A1 LTR MaLR 0 365 1 1009 285 36 18 chr4 18846317 18846566 -165442096 - LTR16C LTR ERVL -87 404 146 201 154 0 0 chr4 18847030 18847069 -165441593 + (TTTAA)n Simple_repeat Simple_repeat 4 42 0 201 270 114 93 chr4 18847278 18847515 -165441147 + MIR3 SINE MIR 2 243 -19 188 277 0 0 chr4 18847516 18847563 -165441099 - L2 LINE L2 -4 3268 3222 464 286 107 40 chr4 18847975 18848328 -165440334 + LTR16A1 LTR ERVL 73 457 0 537 259 0 44 chr4 18848466 18848624 -165440038 - L2 LINE L2 0 3313 3163 2586 100 5 19 chr4 18848806 18849175 -165439487 + THE1B LTR MaLR 1 364 0 884 246 120 22 chr4 18849226 18849379 -165439283 - MLT1F1 LTR MaLR 0 567 430 207 69 0 0 chr4 18849379 18849408 -165439254 + (CTGGGG)n Simple_repeat Simple_repeat 4 32 0 884 246 120 22 chr4 18849408 18849611 -165439051 - MLT1F1 LTR MaLR -137 430 176 273 128 0 0 chr4 18849611 18849658 -165439004 + (GGGAA)n Simple_repeat Simple_repeat 4 50 0 326 296 53 13 chr4 18849684 18849836 -165438826 - MLT1F1 LTR MaLR -435 158 1 257 300 71 41 chr4 18850386 18850556 -165438106 - MIR SINE MIR -65 197 23 24 32 0 0 chr4 18850766 18850797 -165437865 + AT_rich Low_complexity Low_complexity 1 31 0 289 235 224 39 chr4 18850828 18851083 -165437579 - L1MC4a LINE L1 -1872 5936 5635 534 267 47 47 chr4 18851084 18851275 -165437387 - MIR SINE MIR -41 221 31 395 311 133 8 chr4 18851306 18851570 -165437092 - L1MC4a LINE L1 -2161 5647 5351 584 300 83 14 chr4 18851822 18851907 -165436755 - L1ME3A LINE L1 -339 5831 5753 2194 120 0 0 chr4 18851907 18852208 -165436454 - AluSc SINE Alu -8 301 1 584 300 83 14 chr4 18852208 18852412 -165436250 - L1ME3A LINE L1 -417 5753 5522 366 203 248 8 chr4 18852419 18852552 -165436110 - L1ME3A LINE L1 -802 5344 5180 1119 289 90 16 chr4 18852554 18853052 -165435610 + L2 LINE L2 2149 2683 -631 1807 127 51 6 chr4 18853152 18853483 -165435179 + MER6 DNA MER2_type 520 865 0 2097 123 13 0 chr4 18854313 18854615 -165434047 + AluSx SINE Alu 1 306 -6 708 263 27 0 chr4 18854698 18854884 -165433778 + L2 LINE L2 2179 2369 -945 548 207 7 47 chr4 18855154 18855304 -165433358 - AluJb SINE Alu -4 308 165 606 167 0 0 chr4 18855419 18855509 -165433153 + AluSg/x SINE Alu 159 248 -62 1083 148 46 65 chr4 18855509 18855725 -165432937 + AluSq SINE Alu 85 296 -17 1404 107 30 17 chr4 18855725 18855959 -165432703 + MSTA LTR MaLR 192 428 0 634 301 92 4 chr4 18856034 18856273 -165432389 - MIR SINE MIR 0 262 3 1761 132 0 12 chr4 18856461 18856718 -165431944 + AluSg SINE Alu 1 254 -56 319 226 63 51 chr4 18856818 18857087 -165431575 + L1MC4 LINE L1 7660 8042 0 303 224 0 0 chr4 18857553 18857629 -165431033 + MER116 DNA Mariner 1 76 -4 421 291 152 0 chr4 18857641 18857792 -165430870 - L3 LINE CR1 -75 1502 1329 5359 148 43 49 chr4 18857926 18859174 -165429488 - L1M4c LINE L1 -4563 1821 581 476 137 0 0 chr4 18859286 18859359 -165429303 + MER66B LTR ERV1 414 486 0 808 311 33 0 chr4 18859381 18859625 -165429037 + MER82 DNA MER2_type 402 653 0 2328 113 0 3 chr4 18859751 18860062 -165428600 + AluSg SINE Alu 1 310 0 327 241 25 0 chr4 18860114 18860193 -165428469 - 5S rRNA rRNA -37 84 4 384 281 103 34 chr4 18860285 18860634 -165428028 - L1ME3 LINE L1 -201 5961 5589 1068 106 0 0 chr4 18860696 18860828 -165427834 + AluSg1 SINE Alu 1 132 -177 202 297 81 0 chr4 18861653 18861727 -165426935 + MIR SINE MIR 66 145 -117 180 282 239 0 chr4 18862749 18862820 -165425842 + L2 LINE L2 3175 3262 -10 270 312 48 40 chr4 18864578 18864703 -165423959 - MIR SINE MIR -117 145 20 682 191 51 25 chr4 18865045 18865172 -165423490 + LTR32 LTR ERVL 15 145 -326 2331 81 14 11 chr4 18865172 18865520 -165423142 + MER4B LTR ERV1 1 349 -261 1881 142 24 48 chr4 18865732 18866105 -165422557 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr4 18868332 18868353 -165420309 + AT_rich Low_complexity Low_complexity 1 21 0 206 263 50 25 chr4 18870153 18870233 -165418429 - MIR SINE MIR -99 163 82 991 260 91 23 chr4 18870483 18870994 -165417668 + MER90 LTR ERV1 27 570 -5 793 230 180 7 chr4 18871474 18871752 -165416910 + L1ME3A LINE L1 5840 6165 -5 1483 112 95 78 chr4 18872079 18872373 -165416289 - AluSx SINE Alu -12 300 2 415 359 54 23 chr4 18873096 18873355 -165415307 + L1MEd LINE L1 587 853 -5266 399 332 37 0 chr4 18873433 18873647 -165415015 + L1M4 LINE L1 3353 3574 -2572 1148 45 0 0 chr4 18873657 18873789 -165414873 + AluY SINE Alu 1 132 -179 2466 80 0 0 chr4 18873790 18874092 -165414570 + AluY SINE Alu 1 302 -9 189 293 80 13 chr4 18874308 18874383 -165414279 - MER5C DNA MER1_type -239 85 6 442 335 52 0 chr4 18874398 18874610 -165414052 + MIR SINE MIR 27 249 -13 408 40 0 0 chr4 18874687 18874737 -165413925 + (TG)n Simple_repeat Simple_repeat 1 50 0 661 289 110 54 chr4 18874878 18875307 -165413355 + L1MEd LINE L1 785 1237 -4882 2097 132 0 0 chr4 18875448 18875729 -165412933 + AluSq SINE Alu 13 293 -20 1911 103 58 58 chr4 18876520 18876646 -165412016 + AluSx SINE Alu 1 126 -186 225 94 0 0 chr4 18876646 18876678 -165411984 + (CAAA)n Simple_repeat Simple_repeat 4 35 0 1911 103 58 58 chr4 18876678 18876862 -165411800 + AluSx SINE Alu 125 311 -1 492 145 0 60 chr4 18877292 18877375 -165411287 + FRAM SINE Alu 69 146 -30 687 293 29 37 chr4 18877422 18877668 -165410994 - MIR SINE MIR -17 245 2 504 326 39 6 chr4 18877691 18877869 -165410793 + L3 LINE CR1 627 810 -767 1154 188 39 0 chr4 18877885 18878093 -165410569 - MER20 DNA MER1_type -3 216 1 212 211 58 0 chr4 18878201 18878253 -165410409 + L3 LINE CR1 791 845 -732 986 150 20 15 chr4 18878295 18878495 -165410167 + MSTB LTR MaLR 1 201 -225 315 115 33 16 chr4 18878495 18878556 -165410106 + AluS SINE Alu 1 62 -246 1963 173 0 3 chr4 18878733 18879046 -165409616 + AluJb SINE Alu 1 312 0 387 268 226 24 chr4 18879331 18879499 -165409163 - L1M4 LINE L1 -2261 3885 3684 1364 283 54 16 chr4 18879630 18880075 -165408587 + LTR16B LTR ERVL 3 464 0 1959 103 4 21 chr4 18880115 18880396 -165408266 + AluSc SINE Alu 1 276 -33 217 281 4 16 chr4 18880892 18880964 -165407698 + MIR SINE MIR 68 140 -68 2355 99 0 0 chr4 18881016 18881320 -165407342 + AluSp SINE Alu 1 304 -9 1834 175 5 72 chr4 18882008 18882426 -165406236 + MLT1B LTR MaLR 1 390 0 230 355 136 24 chr4 18882532 18882773 -165405889 - L2 LINE L2 -256 3057 2801 243 357 64 35 chr4 18883193 18883364 -165405298 + L2 LINE L2 2992 3167 -105 1660 246 53 9 chr4 18883453 18883983 -165404679 + L1ME1 LINE L1 5623 6159 -7 3109 100 9 0 chr4 18885179 18885609 -165403053 + MER57B LTR ERV1 1 434 0 430 267 55 89 chr4 18885629 18885831 -165402831 - MIR3 SINE MIR -10 198 4 2591 136 106 12 chr4 18886596 18887088 -165401574 - L1PA16 LINE L1 -6 6160 5623 1671 129 4 0 chr4 18887088 18887367 -165401295 + L1PA16 LINE L1 5318 5597 -569 1983 52 0 16 chr4 18887387 18887637 -165401025 - L1PA7 LINE L1 -8 6146 5901 1498 54 0 5 chr4 18887737 18887941 -165400721 - L1PA7 LINE L1 -230 5924 5722 421 318 33 47 chr4 18888542 18888603 -165400059 - L2 LINE L2 -556 2758 2698 1725 178 0 32 chr4 18888603 18888918 -165399744 + AluJo SINE Alu 1 305 -7 421 318 33 47 chr4 18888918 18889067 -165399595 - L2 LINE L2 -616 2698 2551 200 318 16 0 chr4 18889975 18890038 -165398624 + MIR SINE MIR 79 142 -120 274 336 8 67 chr4 18890212 18890346 -165398316 + MIR SINE MIR 20 145 -63 11044 204 36 30 chr4 18890703 18895139 -165393523 - L1MA9 LINE L1 -10 6538 2055 449 283 45 30 chr4 18895658 18895915 -165392747 - L1MA9 LINE L1 -5716 597 267 1933 126 73 22 chr4 18896044 18896401 -165392261 + THE1C LTR MaLR 1 375 0 2286 94 0 0 chr4 18896485 18896783 -165391879 + AluSg1 SINE Alu 1 298 -11 203 0 37 0 chr4 18896786 18896813 -165391849 + (TAA)n Simple_repeat Simple_repeat 2 29 0 209 239 30 30 chr4 18896873 18896940 -165391722 - L2 LINE L2 -5 3267 3201 716 282 5 5 chr4 18897672 18897860 -165390802 - MIR SINE MIR -71 191 4 202 354 90 45 chr4 18897932 18898110 -165390552 - L2 LINE L2 -16 3256 3071 217 364 91 0 chr4 18898126 18898236 -165390426 - MIR SINE MIR -64 144 25 228 384 30 8 chr4 18898278 18898411 -165390251 + MIR3 SINE MIR 73 208 0 795 267 58 30 chr4 18898994 18899425 -165389237 + MLT1C LTR MaLR 16 467 0 396 194 42 42 chr4 18899919 18900058 -165388604 - MLT1J1 LTR MaLR -265 246 69 638 226 0 0 chr4 18900238 18900371 -165388291 + FLAM_C SINE Alu 1 133 -10 2496 57 0 0 chr4 18900448 18900744 -165387918 + AluY SINE Alu 1 296 -15 305 305 138 12 chr4 18901056 18901223 -165387439 - MIR SINE MIR -24 238 51 200 289 60 36 chr4 18903012 18903095 -165385567 + L2 LINE L2 3183 3267 -5 221 119 24 0 chr4 18904787 18904829 -165383833 + (TA)n Simple_repeat Simple_repeat 1 43 0 307 313 87 26 chr4 18905963 18906078 -165382584 - L2 LINE L2 0 3272 3151 26 0 0 0 chr4 18906491 18906517 -165382145 + AT_rich Low_complexity Low_complexity 1 26 0 189 301 36 0 chr4 18907081 18907164 -165381498 + L2 LINE L2 2929 3014 -258 1787 171 121 16 chr4 18907326 18907713 -165380949 - MSTA LTR MaLR 0 428 1 5531 113 10 2 chr4 18907745 18908625 -165380037 - L1PA13 LINE L1 0 6163 5277 212 244 0 0 chr4 18909631 18909676 -165378986 + GA-rich Low_complexity Low_complexity 5 49 0 274 364 70 7 chr4 18909759 18909902 -165378760 - MIR SINE MIR -12 250 99 811 292 117 3 chr4 18910164 18910541 -165378121 + LTR33A LTR ERVL 104 523 0 433 248 62 16 chr4 18911032 18911161 -165377501 - L2 LINE L2 -1 3271 3137 206 356 11 22 chr4 18911576 18911666 -165376996 + MIR SINE MIR 17 105 -157 23 33 0 0 chr4 18911958 18911988 -165376674 + AT_rich Low_complexity Low_complexity 1 30 0 289 183 33 0 chr4 18912823 18912883 -165375779 + MLT1K LTR MaLR 5 66 -522 2198 192 42 65 chr4 18913335 18913902 -165374760 + MLT2B3 LTR ERVL 1 554 0 303 301 55 97 chr4 18914467 18914756 -165373906 - L2 LINE L2 -4 3268 2992 2257 115 0 6 chr4 18914853 18915165 -165373497 + AluSx SINE Alu 1 310 -2 340 235 62 0 chr4 18915175 18915256 -165373406 - MIR SINE MIR -75 187 102 1762 102 4 0 chr4 18915339 18915588 -165373074 + AluSq SINE Alu 58 307 0 21 0 0 0 chr4 18916062 18916083 -165372579 + AT_rich Low_complexity Low_complexity 1 21 0 1233 0 0 0 chr4 18916446 18916581 -165372081 + AluYb8 SINE Alu 179 313 -5 231 240 90 50 chr4 19116784 19116884 -165171778 + MIR SINE MIR 146 249 -13 224 77 26 0 chr4 19116900 19116939 -165171723 + (TA)n Simple_repeat Simple_repeat 2 41 0 319 243 81 36 chr4 19116963 19117074 -165171588 + L2 LINE L2 3194 3309 -4 266 167 17 0 chr4 19117270 19117330 -165171332 + CT-rich Low_complexity Low_complexity 1 61 0 1612 187 14 14 chr4 19117336 19117625 -165171037 - AluJo SINE Alu -23 289 1 290 217 75 57 chr4 19118028 19118134 -165170528 + L2 LINE L2 3140 3247 -25 2434 90 0 0 chr4 19118149 19118448 -165170214 + AluSq SINE Alu 1 299 -14 399 127 0 0 chr4 19118909 19118972 -165169690 + (CA)n Simple_repeat Simple_repeat 1 63 0 1224 137 24 5 chr4 19120912 19121117 -165167545 + AluSg/x SINE Alu 97 305 -5 185 262 155 24 chr4 19121630 19121714 -165166948 - L2 LINE L2 -18 3295 3201 189 245 0 0 chr4 19122426 19122475 -165166187 + GA-rich Low_complexity Low_complexity 4 52 0 306 299 149 31 chr4 19122989 19123183 -165165479 - L2 LINE L2 0 3313 3097 338 285 76 13 chr4 19123288 19123446 -165165216 + MIR SINE MIR 84 251 -11 357 254 82 82 chr4 19124694 19124774 -165163888 - L2 LINE L2 -174 3139 3060 2048 141 0 3 chr4 19124774 19125080 -165163582 + AluSx SINE Alu 1 305 -7 357 254 82 82 chr4 19125080 19125219 -165163443 - L2 LINE L2 -252 3061 2920 206 258 0 76 chr4 19125277 19125343 -165163319 - L2 LINE L2 -377 2936 2876 297 235 167 0 chr4 19125591 19125693 -165162969 - L2 LINE L2 -5 3267 3149 2438 75 0 7 chr4 19125798 19126103 -165162559 + AluY SINE Alu 1 303 -8 429 297 29 35 chr4 19126156 19126330 -165162332 - MIR SINE MIR -63 145 7 261 309 62 0 chr4 19126902 19126983 -165161679 - MIR SINE MIR -118 144 59 494 278 139 19 chr4 19127330 19127539 -165161123 + MIR SINE MIR 11 244 -18 40 0 0 0 chr4 19128732 19128772 -165159890 + AT_rich Low_complexity Low_complexity 1 40 0 23 0 0 0 chr4 19128826 19128849 -165159813 + AT_rich Low_complexity Low_complexity 1 23 0 209 216 0 0 chr4 19129370 19129407 -165159255 + (TATATG)n Simple_repeat Simple_repeat 6 42 0 814 258 50 21 chr4 19130205 19130445 -165158217 - MIR SINE MIR -2 260 14 447 323 8 0 chr4 19130507 19130637 -165158025 + MER94 DNA DNA 3 133 -1 458 252 16 63 chr4 19130754 19130881 -165157781 - L2 LINE L2 -6 3266 3146 228 204 0 0 chr4 19130950 19131004 -165157658 - LTR66 LTR ERVL -159 451 398 * 232 143 0 0 chr4 19130972 19131014 -165157648 + LTR66 LTR ERVL 398 439 -171 2545 56 0 0 chr4 19131257 19131563 -165157099 - AluY SINE Alu -5 306 1 222 91 0 0 chr4 19131805 19131838 -165156824 + (TG)n Simple_repeat Simple_repeat 2 34 0 1608 203 33 15 chr4 19132781 19133111 -165155551 - MLT1A2 LTR MaLR -38 336 1 546 198 97 123 chr4 19133143 19133370 -165155292 - MIR SINE MIR -32 230 10 392 256 44 19 chr4 19134752 19134912 -165153750 - MER103 DNA DNA -2 164 1 552 214 18 18 chr4 19136399 19136511 -165152151 - MER81 DNA DNA -2 112 1 185 245 41 0 chr4 19136545 19136594 -165152068 + L2 LINE L2 3165 3215 -98 1554 170 89 0 chr4 19136630 19136901 -165151761 - AluJb SINE Alu -17 295 1 204 361 49 16 chr4 19137119 19137241 -165151421 - MIR3 SINE MIR -78 130 5 425 188 0 0 chr4 19138071 19138156 -165150506 + L1MA7 LINE L1 6207 6291 0 265 329 0 0 chr4 19138363 19138445 -165150217 + MIR SINE MIR 95 176 -86 771 271 54 55 chr4 19138772 19139143 -165149519 - MLT1J LTR MaLR -54 457 53 193 295 63 32 chr4 19140092 19140187 -165148475 + L2 LINE L2 3181 3278 -35 4752 36 2 16 chr4 19140220 19140830 -165147832 - L1PA4 LINE L1 0 6155 5606 472 191 124 0 chr4 19142389 19142494 -165146168 + MIR SINE MIR 95 212 -50 282 314 88 24 chr4 19142790 19142921 -165145741 - MIR SINE MIR -45 163 25 186 195 39 0 chr4 19143086 19143163 -165145499 + (TTA)n Simple_repeat Simple_repeat 2 81 0 330 230 14 2 chr4 19143375 19143461 -165145201 + MER5A DNA MER1_type 36 131 -57 272 242 0 22 chr4 19145897 19145988 -165142674 + GA-rich Low_complexity Low_complexity 4 92 0 2244 81 3 3 chr4 19147349 19147633 -165141029 - AluY SINE Alu -14 297 14 599 297 15 25 chr4 19147633 19147835 -165140827 + MIR SINE MIR 50 249 -13 552 30 0 0 chr4 19148162 19148228 -165140434 + LTR10D LTR ERV1 2 67 -446 270 300 0 114 chr4 19148624 19148764 -165139898 - MIR SINE MIR -119 143 20 224 256 182 58 chr4 19149369 19149611 -165139051 - L2 LINE L2 -17 3296 3025 356 206 167 10 chr4 19149838 19149940 -165138722 + L2 LINE L2 3191 3308 -5 1209 137 0 0 chr4 19150086 19150261 -165138401 + AluSq SINE Alu 130 304 -9 244 265 60 43 chr4 19150681 19150798 -165137864 - L2 LINE L2 0 3313 3195 181 208 181 0 chr4 19152640 19152712 -165135950 - MIR SINE MIR -38 224 140 286 213 74 65 chr4 19152755 19152863 -165135799 + MIR SINE MIR 15 123 -139 902 94 77 65 chr4 19153501 19153671 -165134991 + MER7A DNA MER2_type 42 211 -135 257 266 168 21 chr4 19153947 19154090 -165134572 + MIR3 SINE MIR 24 187 -21 219 319 107 30 chr4 19155229 19155398 -165133264 + MIR SINE MIR 31 212 -50 2195 116 0 7 chr4 19155425 19155727 -165132935 - AluSq SINE Alu -13 300 1 25 31 0 0 chr4 19155854 19155886 -165132776 + AT_rich Low_complexity Low_complexity 1 32 0 1068 210 40 13 chr4 19156945 19157169 -165131493 + MLT1F1 LTR MaLR 338 567 0 501 263 193 29 chr4 19157169 19157442 -165131220 - MLT1L LTR MaLR -90 525 208 436 256 0 0 chr4 19158365 19158447 -165130215 - MER7A DNA MER2_type -266 82 1 2073 121 7 0 chr4 19159133 19159422 -165129240 + AluSx SINE Alu 1 291 -21 341 270 34 11 chr4 19159700 19159789 -165128873 + L2 LINE L2 2631 2721 -593 1161 123 0 0 chr4 19159789 19159944 -165128718 + FRAM SINE Alu 1 153 -23 405 341 122 33 chr4 19159958 19160478 -165128184 + L2 LINE L2 2714 3269 -44 313 319 64 11 chr4 19160646 19160740 -165127922 + MIR SINE MIR 52 150 -58 2160 141 0 0 chr4 19161215 19161527 -165127135 - AluSx SINE Alu 0 312 1 476 271 96 27 chr4 19161993 19162181 -165126481 + MIR SINE MIR 47 247 -15 241 301 14 0 chr4 19162230 19162303 -165126359 + MIR3 SINE MIR 106 179 -29 26 30 0 0 chr4 19162918 19162951 -165125711 + AT_rich Low_complexity Low_complexity 1 33 0 199 171 0 0 chr4 19164455 19164490 -165124172 + MIR SINE MIR 222 256 -6 331 234 39 94 chr4 19165924 19166052 -165122610 - L2 LINE L2 0 3313 3193 468 100 14 14 chr4 19166408 19166478 -165122184 + AluSp SINE Alu 91 160 -153 210 209 58 35 chr4 19166793 19166879 -165121783 + (CCCCG)n Simple_repeat Simple_repeat 2 89 0 217 232 0 42 chr4 19167108 19167203 -165121459 + (CCCCG)n Simple_repeat Simple_repeat 2 92 0 362 347 40 17 chr4 19169458 19169631 -165119031 - MIR3 SINE MIR -2 206 30 2443 77 3 29 chr4 19169695 19170008 -165118654 - AluSq SINE Alu -8 305 1 1762 208 9 9 chr4 19170339 19170680 -165117982 - MER58B DNA MER1_type 0 341 1 457 322 158 27 chr4 19171207 19171542 -165117120 - L3 LINE CR1 -116 1461 1083 310 253 0 71 chr4 19172294 19172393 -165116269 + MIR SINE MIR 106 197 -65 715 260 87 17 chr4 19172450 19172681 -165115981 - MIR SINE MIR -4 258 12 522 302 116 9 chr4 19174977 19175202 -165113460 - MIR SINE MIR -13 249 1 817 214 71 0 chr4 19175261 19175457 -165113205 + MER20 DNA MER1_type 10 219 0 212 139 0 23 chr4 19175637 19175680 -165112982 + (GAA)n Simple_repeat Simple_repeat 1 42 0 315 0 0 0 chr4 19176552 19176587 -165112075 + (CA)n Simple_repeat Simple_repeat 1 35 0 1613 152 42 4 chr4 19176986 19177249 -165111413 + AluJb SINE Alu 19 291 -21 25 0 0 0 chr4 19177255 19177280 -165111382 + AT_rich Low_complexity Low_complexity 1 25 0 190 204 183 75 chr4 19177562 19177655 -165111007 - MER5A DNA MER1_type -43 146 44 217 190 52 69 chr4 19177590 19177648 -165111014 + MER5B DNA MER1_type 72 128 -50 1951 122 80 0 chr4 19177986 19178273 -165110389 - AluSx SINE Alu -2 310 1 280 222 56 0 chr4 19178328 19178418 -165110244 - L1ME LINE L1 -254 5867 5773 1285 136 50 3 chr4 19178888 19179186 -165109476 - MER84 LTR ERVI 0 507 113 507 304 140 27 chr4 19179332 19179625 -165109037 - L3 LINE CR1 -693 884 559 524 294 71 47 chr4 19179639 19179850 -165108812 - MIR SINE MIR 0 262 47 253 327 167 18 chr4 19179895 19180063 -165108599 - L3 LINE CR1 -981 596 404 310 223 8 92 chr4 19180818 19180948 -165107714 - MER113 DNA MER1_type? -402 119 1 23 0 0 0 chr4 19181274 19181297 -165107365 + AT_rich Low_complexity Low_complexity 1 23 0 1241 238 120 26 chr4 19181388 19181854 -165106808 - MLT1H LTR MaLR -22 527 18 232 318 0 0 chr4 19181881 19181952 -165106710 + MIR SINE MIR 70 141 -67 4944 185 34 11 chr4 19182054 19182189 -165106473 + L1MC3 LINE L1 6721 6852 -933 402 69 0 0 chr4 19182189 19182247 -165106415 + (CA)n Simple_repeat Simple_repeat 1 58 0 4944 185 34 11 chr4 19182247 19183153 -165105509 + L1MC3 LINE L1 6852 7785 0 1605 147 124 0 chr4 19183169 19183434 -165105228 + AluSx SINE Alu 2 299 -3 385 296 94 25 chr4 19184285 19184444 -165104218 - L3 LINE CR1 -1 1576 1407 965 236 44 0 chr4 19184474 19184703 -165103959 + L2 LINE L2 2829 3067 -246 1092 73 29 0 chr4 19184710 19184847 -165103815 + AluSc SINE Alu 1 141 -168 2156 112 11 0 chr4 19184948 19185234 -165103428 + AluSg SINE Alu 11 299 -11 440 182 159 0 chr4 19185239 19185327 -165103335 - FLAM_A SINE Alu -27 115 14 1936 174 0 3 chr4 19185467 19185772 -165102890 + AluSx SINE Alu 5 308 -4 2197 100 17 0 chr4 19185775 19186074 -165102588 + AluSp SINE Alu 1 304 -9 2179 106 34 3 chr4 19186340 19186632 -165102030 - AluSq SINE Alu -12 301 1 2125 88 29 0 chr4 19189376 19189650 -165099012 + AluSx SINE Alu 9 290 -22 432 246 27 0 chr4 19190605 19190715 -165097947 - HAL1 LINE L1 -741 1766 1654 1289 138 0 0 chr4 19190790 19190979 -165097683 - AluSp SINE Alu -4 309 121 329 312 35 52 chr4 19190980 19191153 -165097509 - L1M4 LINE L1 -852 5294 5125 394 155 30 21 chr4 19191154 19191255 -165097407 + LTR24B LTR ERV1 3 104 -361 291 65 0 0 chr4 19191253 19191299 -165097363 - Alu SINE Alu 0 302 257 * 2011 123 10 7 chr4 19191600 19191901 -165096761 + AluSx SINE Alu 3 304 -8 2233 119 3 3 chr4 19192068 19192371 -165096291 - AluSq SINE Alu -10 303 1 2396 110 0 0 chr4 19192950 19193258 -165095404 - AluSx SINE Alu -4 308 1 198 161 0 0 chr4 19193740 19193771 -165094891 - L2 LINE L2 -16 3256 3226 310 194 0 14 chr4 19195942 19196014 -165092648 - LTR24B LTR ERV1 -502 74 4 1826 172 0 25 chr4 19196136 19196455 -165092207 - AluJb SINE Alu -1 311 1 187 207 103 35 chr4 19196662 19196720 -165091942 - L2 LINE L2 -8 3264 3203 1864 169 33 0 chr4 19196735 19197036 -165091626 - AluJo SINE Alu -1 311 1 2019 112 19 0 chr4 19197137 19197224 -165091438 + AluSx SINE Alu 40 124 -188 306 0 0 0 chr4 19197224 19197258 -165091404 + (CAA)n Simple_repeat Simple_repeat 3 36 0 2019 112 19 0 chr4 19197258 19197437 -165091225 + AluSx SINE Alu 124 311 -1 277 315 74 28 chr4 19197775 19197883 -165090779 + MIR SINE MIR 21 133 -129 552 211 158 0 chr4 19197943 19198057 -165090605 + MER45A DNA AcHobo 3 134 -44 339 330 10 0 chr4 19198174 19198277 -165090385 - L1M4 LINE L1 -1860 4286 4183 2165 110 33 3 chr4 19198283 19198583 -165090079 - AluSx SINE Alu -3 309 1 811 125 0 0 chr4 19198600 19198720 -165089942 + MER84 LTR ERVI 2 121 -386 242 170 0 0 chr4 19198841 19198888 -165089774 + L1MB4 LINE L1 6134 6180 0 1978 102 27 0 chr4 19199110 19199366 -165089296 - AluSg SINE Alu -14 296 34 260 292 45 0 chr4 19200540 19200629 -165088033 + L1ME1 LINE L1 6034 6126 -40 655 115 250 27 chr4 19200633 19200781 -165087881 - AluSx SINE Alu -25 287 107 598 233 24 14 chr4 19201034 19201196 -165087466 + MIR SINE MIR 35 205 -57 2275 120 10 0 chr4 19202499 19202807 -165085855 - AluSx SINE Alu -1 311 1 2369 103 7 0 chr4 19202812 19203122 -165085540 - AluSq SINE Alu -1 312 1 870 108 15 15 chr4 19204258 19204388 -165084274 - AluSx SINE Alu -183 130 1 1869 132 44 0 chr4 19204478 19204751 -165083911 + AluJb SINE Alu 12 296 -16 2218 105 0 0 chr4 19206844 19207129 -165081533 + AluSx SINE Alu 1 285 -27 266 233 12 0 chr4 19207130 19207216 -165081446 + (TA)n Simple_repeat Simple_repeat 2 88 0 333 0 0 0 chr4 19208533 19208570 -165080092 + (TTA)n Simple_repeat Simple_repeat 2 38 0 2240 107 10 23 chr4 19209174 19209484 -165079178 - AluSx SINE Alu -6 306 1 527 242 98 58 chr4 19209549 19209737 -165078925 - L1MC4 LINE L1 -5 8037 7833 2396 88 0 0 chr4 19209737 19210032 -165078630 - AluSg SINE Alu -15 295 1 527 242 98 58 chr4 19210032 19210120 -165078542 - L1MC4 LINE L1 -209 7833 7750 207 266 138 21 chr4 19210182 19210276 -165078386 + MIR SINE MIR 20 124 -84 2371 76 7 0 chr4 19210394 19210695 -165077967 - AluSp SINE Alu -10 303 1 1640 137 29 46 chr4 19210695 19211023 -165077639 - AluSq SINE Alu 0 313 1 1545 214 10 3 chr4 19211029 19211350 -165077312 - AluJo SINE Alu 0 323 1 274 262 78 19 chr4 19211914 19212017 -165076645 - MIR SINE MIR -78 130 22 376 328 0 23 chr4 19212678 19212806 -165075856 + MIR SINE MIR 27 151 -111 363 131 16 0 chr4 19212822 19212882 -165075780 + MLT2C1 LTR ERVL 11 71 -393 314 73 0 0 chr4 19212882 19212923 -165075739 + Alu SINE Alu 1 41 -267 1578 106 22 13 chr4 19212923 19213181 -165075481 + AluSg/x SINE Alu 74 312 0 1579 192 34 3 chr4 19213182 19213505 -165075157 + MLT2C1 LTR ERVL 64 396 -1 208 240 80 40 chr4 19213604 19213679 -165074983 - MIR SINE MIR -69 139 62 1745 154 50 0 chr4 19214263 19214543 -165074119 - AluJb SINE Alu -18 294 1 323 260 143 17 chr4 19214812 19214988 -165073674 - L1MC4a LINE L1 -360 5810 5691 1633 116 0 13 chr4 19215034 19215259 -165073403 + AluSg/x SINE Alu 86 307 -5 1368 78 0 47 chr4 19215282 19215473 -165073189 - AluY SINE Alu -16 295 114 1331 164 9 0 chr4 19215573 19215792 -165072870 + Tigger3(Golem) DNA MER2_type 2808 3028 -1 1846 135 52 12 chr4 19215801 19216126 -165072536 - MER47A DNA MER2_type 0 366 29 2255 123 16 0 chr4 19216127 19216435 -165072227 + AluSq SINE Alu 1 313 0 259 167 0 0 chr4 19216457 19216499 -165072163 - MER47A DNA MER2_type -324 42 1 1713 159 5 101 chr4 19216499 19216624 -165072038 + L1MC4 LINE L1 6695 6830 -1212 1776 173 6 28 chr4 19216624 19216942 -165071720 + AluJo SINE Alu 1 311 -1 1713 159 5 101 chr4 19216942 19217230 -165071432 + L1MC4 LINE L1 6830 7068 -974 201 346 71 9 chr4 19217720 19217835 -165070827 + MIR SINE MIR 44 163 -63 2140 128 3 3 chr4 19217889 19218195 -165070467 + AluSx SINE Alu 5 310 -2 228 35 0 0 chr4 19219116 19219145 -165069517 + (CAGGG)n Simple_repeat Simple_repeat 1 29 0 608 299 143 30 chr4 19219204 19219638 -165069024 + L2 LINE L2 2826 3308 -5 1449 154 5 9 chr4 19219700 19219921 -165068741 + AluSx SINE Alu 1 220 -92 1976 146 3 23 chr4 19223471 19223773 -165064889 - AluSx SINE Alu -10 302 7 1858 152 45 0 chr4 19223781 19224071 -165064591 - AluJb SINE Alu -9 303 1 334 326 23 8 chr4 19229134 19229266 -165059396 - L2 LINE L2 -6 3307 3174 200 238 0 0 chr4 19229433 19229475 -165059187 - MIR SINE MIR -110 152 111 346 289 19 0 chr4 19230360 19230464 -165058198 + L2 LINE L2 3207 3312 -1 216 214 0 0 chr4 19230522 19230578 -165058084 + (TAGA)n Simple_repeat Simple_repeat 1 56 0 1865 72 0 0 chr4 19231053 19231275 -165057387 + AluY SINE Alu 90 311 0 2216 104 4 0 chr4 19232586 19232984 -165055678 + AluSx SINE Alu 1 399 0 225 0 0 0 chr4 19233905 19233930 -165054732 + (TAAAAA)n Simple_repeat Simple_repeat 2 26 0 280 267 23 17 chr4 19234184 19234360 -165054302 + GA-rich Low_complexity Low_complexity 2 178 0 242 319 187 0 chr4 19234452 19234543 -165054119 - MIR SINE MIR -63 145 38 181 229 292 0 chr4 19234609 19234705 -165053957 - MER5A DNA MER1_type -24 165 42 317 269 67 17 chr4 19235194 19235313 -165053349 - MIR SINE MIR -68 140 16 2160 104 40 0 chr4 19235353 19235651 -165053011 + AluSx SINE Alu 1 310 -2 206 261 54 65 chr4 19235655 19235747 -165052915 - MIR SINE MIR -86 176 86 191 261 22 0 chr4 19236362 19236408 -165052254 - MIR SINE MIR 0 262 216 2179 125 20 0 chr4 19238726 19239029 -165049633 - AluSx SINE Alu -3 309 1 1520 112 62 4 chr4 19239081 19239341 -165049321 - L1MB3 LINE L1 -9 6174 5900 1708 133 8 0 chr4 19239369 19239610 -165049052 + AluSx SINE Alu 1 243 -69 1667 182 13 26 chr4 19240290 19240592 -165048070 + AluJo SINE Alu 5 302 -10 2159 127 0 0 chr4 19240884 19241192 -165047470 + AluSx SINE Alu 1 308 0 2121 149 0 0 chr4 19242075 19242377 -165046285 + AluSx SINE Alu 1 302 -10 1733 175 13 26 chr4 19242913 19243216 -165045446 + AluJo SINE Alu 1 299 -13 2359 86 6 13 chr4 19245639 19245818 -165042844 - AluY SINE Alu 0 311 133 2580 70 0 0 chr4 19245818 19246119 -165042543 - AluY SINE Alu -10 301 1 2359 86 6 13 chr4 19246119 19246252 -165042410 - AluY SINE Alu -178 133 1 2152 98 33 16 chr4 19246291 19246657 -165042005 - L1PA15 LINE L1 0 6165 5794 219 348 71 21 chr4 19247349 19247490 -165041172 + MIR SINE MIR 109 256 -6 498 241 40 14 chr4 19247526 19247691 -165040971 + MIR SINE MIR 34 206 -56 2505 85 0 0 chr4 19248018 19248323 -165040339 - AluY SINE Alu -6 305 1 1204 133 80 5 chr4 19248513 19248701 -165039961 - AluJb SINE Alu -15 297 96 408 194 0 0 chr4 19248801 19248883 -165039779 - AluS SINE Alu -237 64 1 194 336 55 55 chr4 19249270 19249378 -165039284 + MIR3 SINE MIR 40 150 -58 1856 141 14 27 chr4 19249378 19249675 -165038987 + AluJo SINE Alu 1 293 -19 194 336 55 55 chr4 19249675 19249694 -165038968 + MIR3 SINE MIR 149 167 -41 2143 119 33 6 chr4 19249697 19250034 -165038628 - MER7A DNA MER2_type -1 345 2 2434 93 3 3 chr4 19251404 19251716 -165036946 - AluSp SINE Alu -1 312 1 2557 151 44 13 chr4 19252344 19252869 -165035793 - L1MB7 LINE L1 0 6184 5644 827 218 18 0 chr4 19253249 19253414 -165035248 + FRAM SINE Alu 1 164 -12 302 342 18 0 chr4 19253574 19253685 -165034977 + L2 LINE L2 1154 1266 -2048 1696 141 7 19 chr4 19254843 19255113 -165033549 + AluJb SINE Alu 21 287 -25 2257 100 3 17 chr4 19255118 19255418 -165033244 + AluSx SINE Alu 1 296 -16 466 355 116 20 chr4 19255491 19255888 -165032774 + L2 LINE L2 2878 3312 -1 2371 112 0 3 chr4 19256527 19256840 -165031822 + AluSx SINE Alu 1 312 0 297 320 92 7 chr4 19257325 19257478 -165031184 - MIR SINE MIR -77 185 20 1843 133 51 17 chr4 19258610 19258903 -165029759 + AluJb SINE Alu 1 303 -9 1869 160 28 3 chr4 19258903 19259190 -165029472 + AluJb SINE Alu 1 294 -18 640 123 18 0 chr4 19259190 19259304 -165029358 + GA-rich Low_complexity Low_complexity 3 118 0 1836 84 63 0 chr4 19259610 19259849 -165028813 - AluY SINE Alu -57 254 1 855 178 11 52 chr4 19259910 19260084 -165028578 + AluJb SINE Alu 125 291 -21 2291 119 3 0 chr4 19260698 19261001 -165027661 - AluSx SINE Alu -7 305 2 2152 123 3 0 chr4 19261744 19262037 -165026625 - AluSx SINE Alu -18 294 1 842 212 17 6 chr4 19262239 19262418 -165026244 + MER5A DNA MER1_type 3 183 -6 3621 158 68 6 chr4 19262472 19263179 -165025483 - L1MB7 LINE L1 -16 6168 5418 2285 102 23 0 chr4 19263729 19264034 -165024628 - AluSp SINE Alu -1 312 1 2386 89 7 0 chr4 19264532 19264835 -165023827 - AluSq SINE Alu -8 305 1 223 282 35 12 chr4 19265945 19266030 -165022632 - MIR SINE MIR -99 163 77 245 310 28 0 chr4 19269134 19269205 -165019457 - MIR SINE MIR -124 138 66 2606 60 3 0 chr4 19269642 19269943 -165018719 + AluSp SINE Alu 1 302 -11 248 224 208 27 chr4 19270280 19270463 -165018199 - L1ME4a LINE L1 -101 6020 5805 266 342 0 0 chr4 19273281 19273357 -165015305 + MIR SINE MIR 47 122 -140 276 343 105 12 chr4 19273366 19273538 -165015124 + MIR SINE MIR 66 253 -9 578 305 135 17 chr4 19274134 19274615 -165014047 + L2 LINE L2 2738 3270 -2 195 129 0 0 chr4 19275325 19275356 -165013306 + (GGGA)n Simple_repeat Simple_repeat 4 34 0 319 274 9 18 chr4 19275397 19275510 -165013152 + (CAGAGA)n Simple_repeat Simple_repeat 2 113 0 249 33 0 0 chr4 19277710 19277740 -165010922 + (CTCA)n Simple_repeat Simple_repeat 2 31 0 256 319 109 0 chr4 19277831 19277969 -165010693 + L2 LINE L2 722 874 -2440 827 285 135 92 chr4 19278465 19279725 -165008937 + L2 LINE L2 1940 3263 -50 230 335 86 29 chr4 19279738 19279947 -165008715 + MLT1L LTR MaLR 6 226 -389 634 70 0 0 chr4 19279980 19280066 -165008596 + AluJ/FRAM SINE Alu 221 306 -6 943 218 47 8 chr4 19280069 19280311 -165008351 + LTR16A1 LTR ERVL 207 457 0 414 57 0 0 chr4 19280591 19280644 -165008018 + (GGAA)n Simple_repeat Simple_repeat 4 56 0 2093 119 0 0 chr4 19280862 19281188 -165007474 + AluSx SINE Alu 1 326 0 1811 140 14 3 chr4 19281215 19281507 -165007155 + AluJo SINE Alu 1 295 -17 318 26 0 0 chr4 19281765 19281804 -165006858 + (CA)n Simple_repeat Simple_repeat 2 40 0 397 301 81 84 chr4 19281974 19282524 -165006138 + L1M3c LINE L1 1728 3899 -2949 2110 106 0 26 chr4 19282551 19282853 -165005809 - AluSx SINE Alu -18 294 1 421 270 123 19 chr4 19282855 19283066 -165005596 + HAL1b LINE L1 413 645 -703 610 333 81 59 chr4 19283109 19283188 -165005474 + L1M4c LINE L1 2053 2129 -4417 2093 130 0 0 chr4 19283188 19283487 -165005175 + AluSx SINE Alu 1 299 -13 610 333 81 59 chr4 19283487 19283503 -165005159 + L1M4c LINE L1 2129 2143 -4403 1770 174 3 10 chr4 19283503 19283814 -165004848 + AluJo SINE Alu 1 309 -3 610 333 81 59 chr4 19283814 19284261 -165004401 + L1M4c LINE L1 2143 2649 -3897 4182 194 13 20 chr4 19284279 19285023 -165003639 + L1P LINE L1 4263 5000 -1146 1775 177 0 10 chr4 19285023 19285328 -165003334 - AluJb SINE Alu -10 302 1 4182 194 13 20 chr4 19285328 19285580 -165003082 + L1P LINE L1 5000 5252 -894 226 296 11 23 chr4 19286531 19286619 -165002043 - L1M4b LINE L1 -6341 518 432 2269 94 7 0 chr4 19286767 19287075 -165001587 + AluSp SINE Alu 1 310 -3 953 283 123 29 chr4 19288066 19288799 -164999863 + L2 LINE L2 2500 3305 -8 1422 226 61 53 chr4 19289566 19290061 -164998601 + MLT1D LTR MaLR 1 418 -10 215 324 93 19 chr4 19291143 19291251 -164997411 + MIR SINE MIR 18 133 -75 206 239 0 15 chr4 19294058 19294125 -164994537 + (CA)n Simple_repeat Simple_repeat 1 66 0 2248 62 24 3 chr4 19294441 19294733 -164993929 + AluSp SINE Alu 2 299 -14 432 244 16 8 chr4 19295085 19295208 -164993454 + Charlie8 DNA MER1_type 46 169 -2248 2257 65 48 0 chr4 19295352 19295642 -164993020 + AluY SINE Alu 1 304 -7 2342 95 0 0 chr4 19297716 19298021 -164990641 + AluSq SINE Alu 1 305 -8 279 265 247 19 chr4 19298589 19298751 -164989911 + MIR SINE MIR 63 261 -1 21 36 0 0 chr4 19300854 19300882 -164987780 + GC_rich Low_complexity Low_complexity 1 28 0 2200 82 27 0 chr4 19301450 19301744 -164986918 - AluSp SINE Alu 0 313 12 262 208 13 26 chr4 19301760 19301837 -164986825 - L2 LINE L2 -301 2971 2896 387 276 24 0 chr4 19301932 19302059 -164986603 + MLT1K LTR MaLR 184 313 -275 323 279 253 13 chr4 19302626 19302780 -164985882 + L2 LINE L2 3123 3313 0 * 470 267 82 36 chr4 19302769 19302964 -164985698 - MIR SINE MIR -3 259 56 902 147 0 22 chr4 19302992 19303128 -164985534 + FLAM_C SINE Alu 1 133 0 1369 208 32 32 chr4 19303143 19303270 -164985392 + AluJo SINE Alu 1 127 -185 225 65 0 0 chr4 19303270 19303301 -164985361 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 1369 208 32 32 chr4 19303301 19303481 -164985181 + AluJo SINE Alu 126 308 -4 2411 181 47 74 chr4 19303599 19304233 -164984429 - LTR34 LTR ERV1 -4 695 79 240 146 0 6 chr4 19304292 19304348 -164984314 + Alu SINE Alu 1 37 -265 246 0 29 0 chr4 19304396 19304430 -164984232 + AluY SINE Alu 18 52 -250 596 327 16 65 chr4 19304566 19304887 -164983775 - L2 LINE L2 -1 3271 2967 239 222 0 0 chr4 19305597 19305642 -164983020 + L2 LINE L2 3269 3313 0 210 171 0 24 chr4 19305648 19305689 -164982973 + (TGAA)n Simple_repeat Simple_repeat 4 43 0 203 273 36 0 chr4 19306931 19306986 -164981676 + MIR SINE MIR 81 137 -71 2277 93 3 7 chr4 19307949 19308259 -164980403 + AluSx SINE Alu 1 309 -3 429 203 203 0 chr4 19308425 19308553 -164980109 - MER5A DNA MER1_type -35 154 1 520 199 69 8 chr4 19308554 19308685 -164979977 + L2 LINE L2 2667 2805 -509 183 273 18 0 chr4 19309952 19310007 -164978655 - MIR SINE MIR -6 256 201 365 184 0 11 chr4 19310037 19310124 -164978538 + MLT1C LTR MaLR 34 119 -348 5216 69 24 22 chr4 19310124 19310381 -164978281 - L1P LINE L1 -1635 4511 4256 2278 72 3 3 chr4 19310381 19310674 -164977988 - AluY SINE Alu -14 297 5 5216 69 24 22 chr4 19310674 19311239 -164977423 - L1P LINE L1 -1890 4256 3687 1493 64 59 0 chr4 19311239 19311458 -164977204 + L1P3 LINE L1 5446 5677 -477 2068 137 0 19 chr4 19311458 19311595 -164977067 + AluSx SINE Alu 1 139 -173 2225 101 3 7 chr4 19311595 19311901 -164976761 + AluSp SINE Alu 1 305 -8 2068 137 0 19 chr4 19311901 19312078 -164976584 + AluSx SINE Alu 139 309 -3 817 225 67 10 chr4 19312080 19312289 -164976373 + MLT1C LTR MaLR 213 433 -34 407 277 54 8 chr4 19312318 19312448 -164976214 - MIR3 SINE MIR -62 146 11 2086 119 0 7 chr4 19313215 19313517 -164975145 - AluSx SINE Alu -12 300 1 843 124 31 0 chr4 19313816 19313945 -164974717 - FRAM SINE Alu -3 173 41 705 265 84 20 chr4 19314298 19314659 -164974003 + LTR16C LTR ERVL 61 491 0 414 328 0 6 chr4 19314710 19314890 -164973772 + (CA)n Simple_repeat Simple_repeat 1 179 0 674 298 113 16 chr4 19316216 19316595 -164972067 - L2 LINE L2 -4 3268 2853 298 269 77 0 chr4 19316787 19316891 -164971771 + MER5A DNA MER1_type 51 162 -27 1236 136 0 6 chr4 19317101 19317277 -164971385 + FAM SINE Alu 1 175 0 1841 138 36 13 chr4 19317340 19317456 -164971206 + AluSx SINE Alu 1 113 -199 219 36 0 0 chr4 19317456 19317484 -164971178 + (CAA)n Simple_repeat Simple_repeat 3 30 0 1841 138 36 13 chr4 19317484 19317672 -164970990 + AluSx SINE Alu 113 312 0 233 245 314 0 chr4 19317823 19317925 -164970737 + MIR SINE MIR 9 142 -120 227 256 58 58 chr4 19318285 19318350 -164970312 - MIR SINE MIR -79 129 62 1097 172 39 10 chr4 19318350 19318553 -164970109 - MER3 DNA MER1_type 0 209 1 436 261 7 12 chr4 19318562 19318690 -164969972 - MER5B DNA MER1_type 0 178 61 983 271 199 16 chr4 19319819 19320247 -164968415 - L2 LINE L2 0 3313 2808 355 363 39 11 chr4 19320322 19320504 -164968158 - MIR SINE MIR -68 194 8 2129 124 3 16 chr4 19320770 19321053 -164967609 + AluSq SINE Alu 1 283 -30 435 18 18 0 chr4 19321053 19321108 -164967554 + (TAA)n Simple_repeat Simple_repeat 2 180 0 2129 124 3 16 chr4 19321108 19321139 -164967523 + AluSq SINE Alu 283 313 0 2028 149 0 0 chr4 19321557 19321858 -164966804 - AluSx SINE Alu -11 301 1 1695 115 98 3 chr4 19321858 19322163 -164966499 - MER4B LTR ERV1 -245 365 32 2051 95 58 10 chr4 19322198 19322492 -164966170 - AluSc SINE Alu -1 308 1 2096 86 3 50 chr4 19322514 19322852 -164965810 - MER4B-int LTR ERV1 0 6758 6437 1597 118 0 0 chr4 19322852 19323072 -164965590 - AluSg/x SINE Alu -11 301 82 226 278 19 0 chr4 19323594 19323648 -164965014 + L2 LINE L2 3215 3269 -3 2114 89 20 0 chr4 19323842 19324135 -164964527 + AluSx SINE Alu 1 299 -13 411 236 62 87 chr4 19324943 19325218 -164963444 + L1MC4 LINE L1 7751 8018 -24 194 244 0 0 chr4 19325311 19325356 -164963306 - MIR SINE MIR -117 145 101 187 336 122 15 chr4 19325406 19325537 -164963125 - L2 LINE L2 -28 3244 3100 268 230 11 58 chr4 19325565 19325652 -164963010 + L2 LINE L2 2932 3014 -258 244 196 265 10 chr4 19328212 19328314 -164960348 + MIR SINE MIR 19 146 -62 190 320 200 16 chr4 19328602 19328727 -164959935 - MIR3 SINE MIR -20 188 41 1963 119 6 45 chr4 19329101 19329236 -164959426 + AluSx SINE Alu 1 140 -172 2336 71 0 0 chr4 19329236 19329542 -164959120 + AluY SINE Alu 1 306 0 1963 119 6 45 chr4 19329542 19329716 -164958946 + AluSx SINE Alu 140 299 -13 204 217 72 116 chr4 19329966 19330104 -164958558 - MIR SINE MIR -61 147 16 189 264 81 23 chr4 19330670 19330757 -164957905 + MIR SINE MIR 48 139 -69 275 276 20 61 chr4 19330833 19330931 -164957731 - MIR SINE MIR -113 149 56 427 176 15 0 chr4 19332180 19332248 -164956414 + AluJ/FLAM SINE Alu 1 69 -243 1516 160 11 25 chr4 19332249 19332524 -164956138 + AluJo SINE Alu 31 301 -11 412 216 39 20 chr4 19332543 19332645 -164956017 - MIR SINE MIR -56 206 103 378 320 81 42 chr4 19332653 19332912 -164955750 + L3 LINE CR1 1277 1545 -32 244 254 42 0 chr4 19333108 19333179 -164955483 - MER96 DNA MER1_type? -98 77 4 185 341 61 8 chr4 19333238 19333370 -164955292 + L2 LINE L2 2470 2608 -706 283 364 23 8 chr4 19333630 19333759 -164954903 + L2 LINE L2 3180 3310 -3 354 45 0 0 chr4 19334221 19334265 -164954397 + (CA)n Simple_repeat Simple_repeat 1 44 0 278 293 12 12 chr4 19334973 19335055 -164953607 - MIR SINE MIR -87 121 40 1232 314 169 18 chr4 19335453 19336408 -164952254 + L2 LINE L2 2208 3310 -3 206 299 0 52 chr4 19336781 19336878 -164951784 + L2 LINE L2 3179 3270 -2 209 295 86 19 chr4 19338195 19338300 -164950362 - MIR3 SINE MIR -34 174 63 1977 141 7 3 chr4 19339980 19340284 -164948378 - AluJo SINE Alu -7 305 1 2271 89 0 13 chr4 19340296 19340599 -164948063 - AluY SINE Alu -12 299 1 333 240 88 41 chr4 19341327 19341376 -164947286 + L1MC4 LINE L1 7864 7909 -133 405 0 0 0 chr4 19341376 19341421 -164947241 + (CA)n Simple_repeat Simple_repeat 2 46 0 333 240 88 41 chr4 19341421 19341542 -164947120 + L1MC4 LINE L1 7909 8042 0 270 222 10 50 chr4 19342229 19342328 -164946334 + CT-rich Low_complexity Low_complexity 4 98 0 328 329 0 13 chr4 19342915 19343070 -164945592 + C-rich Low_complexity Low_complexity 5 157 0 233 209 17 26 chr4 19343130 19343245 -164945417 + CT-rich Low_complexity Low_complexity 1 114 0 209 239 319 35 chr4 19345562 19345675 -164942987 - MIR3 SINE MIR -62 146 2 328 301 0 0 chr4 19346250 19346333 -164942329 + (CA)n Simple_repeat Simple_repeat 2 84 0 208 333 58 82 chr4 19346546 19346717 -164941945 + MIR3 SINE MIR 5 171 -37 266 244 37 12 chr4 19348194 19348276 -164940386 + L3 LINE CR1 1156 1239 -338 307 328 92 23 chr4 19352986 19353160 -164935502 + MIR3 SINE MIR 21 206 -2 609 128 84 84 chr4 19353536 19353678 -164934984 - MER53 DNA DNA -1 188 44 2221 77 11 0 chr4 19353678 19353965 -164934697 + AluSx SINE Alu 1 290 -22 609 128 84 84 chr4 19353965 19354001 -164934661 - MER53 DNA DNA -144 45 10 1539 147 13 40 chr4 19354569 19354869 -164933793 - AluSx SINE Alu -20 292 1 1648 143 66 0 chr4 19355358 19355644 -164933018 + AluJb SINE Alu 1 305 -7 1845 88 0 119 chr4 19355648 19355966 -164932696 - AluSg SINE Alu -12 298 19 467 277 13 26 chr4 19355987 19356142 -164932520 + LTR24B LTR ERV1 417 569 -7 990 135 0 14 chr4 19356159 19356307 -164932355 + AluSq/x SINE Alu 1 146 -167 1972 110 22 0 chr4 19356307 19356579 -164932083 + AluSx SINE Alu 1 278 -34 1201 115 50 25 chr4 19456582 19456782 -164831880 - MSTA LTR MaLR -223 205 1 22 35 0 0 chr4 19457161 19457190 -164831472 + AT_rich Low_complexity Low_complexity 1 29 0 184 315 19 0 chr4 19457252 19457306 -164831356 - L2 LINE L2 -89 3183 3129 2042 124 185 6 chr4 19457657 19458020 -164830642 + MSTA LTR MaLR 1 428 0 301 178 111 14 chr4 19458020 19458122 -164830540 - MLT1J LTR MaLR -320 126 1 339 229 0 0 chr4 19459020 19459103 -164829559 + Charlie2 DNA MER1_type 2711 2793 -69 419 276 43 0 chr4 19459737 19459853 -164828809 + MER5C DNA MER1_type 4 124 -200 215 273 0 0 chr4 19460410 19460465 -164828197 + CT-rich Low_complexity Low_complexity 3 57 0 291 336 6 0 chr4 19461634 19461777 -164826885 - MIR SINE MIR -62 146 47 446 308 90 14 chr4 19462140 19462351 -164826311 + L2 LINE L2 2723 2949 -365 677 257 11 6 chr4 19462365 19462548 -164826114 + MIR SINE MIR 76 259 -3 276 345 52 35 chr4 19462575 19462807 -164825855 + L2 LINE L2 2950 3185 -128 387 0 0 0 chr4 19462840 19462883 -164825779 + (T)n Simple_repeat Simple_repeat 1 43 0 289 327 2 9 chr4 19463860 19464001 -164824661 + MIR SINE MIR 4 143 -65 395 184 46 0 chr4 19464051 19464138 -164824524 - MIR SINE MIR -56 206 116 2404 130 60 34 chr4 19464154 19464672 -164823990 - MLT2A2 LTR ERVL 0 554 1 2960 165 65 41 chr4 19464725 19465314 -164823348 - LTR26 LTR ERV1 0 603 1 629 263 78 5 chr4 19467203 19467420 -164821242 - MIR SINE MIR -25 237 5 262 170 0 0 chr4 19467420 19467467 -164821195 + MIR SINE MIR 146 192 -70 575 48 0 12 chr4 19467572 19467656 -164821006 + (TTCC)n Simple_repeat Simple_repeat 1 83 0 262 96 19 19 chr4 19467725 19467777 -164820885 + (GGAA)n Simple_repeat Simple_repeat 1 52 0 245 288 56 16 chr4 19467778 19467903 -164820759 + LTR16C LTR ERVL 360 489 -2 228 254 0 48 chr4 19467903 19467966 -164820696 + CT-rich Low_complexity Low_complexity 4 63 0 240 255 0 0 chr4 19468303 19468354 -164820308 - L2 LINE L2 -19 3294 3244 471 78 0 0 chr4 19468418 19468482 -164820180 + (TA)n Simple_repeat Simple_repeat 1 64 0 281 244 26 0 chr4 19468498 19468576 -164820086 - MIR SINE MIR -105 157 78 421 298 53 8 chr4 19469616 19469747 -164818915 - L2 LINE L2 0 3272 3136 298 309 62 41 chr4 19469748 19469942 -164818720 + MLT1L LTR MaLR 3 200 -415 571 256 55 55 chr4 19470642 19470915 -164817747 + L2 LINE L2 3041 3313 0 5829 79 27 23 chr4 19471297 19472160 -164816502 + SVA Other Other 1 866 -520 10696 98 5 10 chr4 19472271 19474309 -164814353 - L1P LINE L1 -3528 2618 595 587 276 53 53 chr4 19474637 19475053 -164813609 + L1M4 LINE L1 3937 4352 -1794 1005 154 0 0 chr4 19475225 19475374 -164813288 + MSTA LTR MaLR 278 426 -2 318 290 205 30 chr4 19476004 19476408 -164812254 - L2 LINE L2 0 3313 2839 6650 45 20 0 chr4 19476630 19477439 -164811223 - L1PA5 LINE L1 -1 6153 5329 2594 47 3 3 chr4 19477435 19477773 -164810889 + L1PA5 LINE L1 4972 5309 -837 * 923 290 212 22 chr4 19477808 19478923 -164809739 - L2 LINE L2 -16 3297 1968 435 192 8 24 chr4 19478951 19479076 -164809586 + CT-rich Low_complexity Low_complexity 4 126 0 233 280 174 53 chr4 19480707 19480839 -164807823 + L2 LINE L2 2229 2376 -938 382 276 66 64 chr4 19480926 19481096 -164807566 + MIR SINE MIR 3 174 -69 28 0 0 0 chr4 19481130 19481158 -164807504 + AT_rich Low_complexity Low_complexity 1 28 0 1103 153 0 0 chr4 19481188 19481364 -164807298 - AluSg/x SINE Alu 0 312 137 320 347 108 36 chr4 19481591 19481868 -164806794 + L2 LINE L2 2974 3270 -2 1129 251 82 3 chr4 19482639 19482942 -164805720 + L2 LINE L2 2466 2792 -522 189 225 14 99 chr4 19482955 19483026 -164805636 - L2 LINE L2 -210 3062 2998 286 301 48 0 chr4 19483337 19483420 -164805242 + MIR SINE MIR 90 176 -86 2035 97 8 0 chr4 19483563 19483830 -164804832 - AluSx SINE Alu -43 269 1 186 189 0 0 chr4 19484015 19484052 -164804610 + GA-rich Low_complexity Low_complexity 1 37 0 202 225 0 0 chr4 19484875 19484915 -164803747 + L2 LINE L2 3254 3293 -20 320 188 0 12 chr4 19485810 19485890 -164802772 + (TA)n Simple_repeat Simple_repeat 2 80 0 25075 49 0 1 chr4 19486245 19489270 -164799392 + L1P LINE L1 4 3026 -3120 294 266 46 18 chr4 19490279 19490388 -164798274 - MIR SINE MIR -57 205 94 290 290 94 29 chr4 19490391 19490529 -164798133 - MIR SINE MIR -60 202 56 216 323 15 0 chr4 19490546 19490611 -164798051 + L2 LINE L2 3248 3313 0 475 274 18 9 chr4 19492489 19492602 -164796060 - MER81 DNA DNA 0 114 1 215 250 89 0 chr4 19492650 19492706 -164795956 + MIR SINE MIR 29 89 -173 191 109 174 22 chr4 19492794 19492840 -164795822 + MIR SINE MIR 132 184 -78 273 322 28 42 chr4 19493998 19494141 -164794521 - L1ME LINE L1 -561 5560 5420 388 219 94 78 chr4 19494874 19495002 -164793660 - L2 LINE L2 0 3313 3184 354 355 64 24 chr4 19495150 19495401 -164793261 - MIR SINE MIR 0 262 2 307 345 26 0 chr4 19496221 19496334 -164792328 + MIR3 SINE MIR 1 116 -92 208 0 62 0 chr4 19497872 19497904 -164790758 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 215 281 59 74 chr4 19498021 19498156 -164790506 + MIR3 SINE MIR 12 144 -64 207 114 0 0 chr4 19498182 19498217 -164790445 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 276 263 12 12 chr4 19498220 19498300 -164790362 - MIR SINE MIR -10 252 173 330 290 32 16 chr4 19498927 19499051 -164789611 + L2 LINE L2 2680 2805 -509 471 276 147 6 chr4 19499056 19499226 -164789436 - MER3 DNA MER1_type 0 209 16 444 281 186 74 chr4 19499238 19499576 -164789086 + L2 LINE L2 2897 3272 0 316 307 23 0 chr4 19500457 19500545 -164788117 + MIR SINE MIR 11 100 -162 2189 146 102 128 chr4 19500666 19501126 -164787536 + MER21B LTR ERV1 1 446 -417 1645 155 7 61 chr4 19501126 19501423 -164787239 - AluJo SINE Alu -30 282 2 2189 146 102 128 chr4 19501423 19501510 -164787152 + MER21B LTR ERV1 446 534 -329 2079 126 0 3 chr4 19501510 19501796 -164786866 - AluSx SINE Alu -27 285 1 1344 211 32 13 chr4 19502585 19502897 -164785765 + MER33 DNA MER1_type 3 320 -4 248 250 0 0 chr4 19503158 19503210 -164785452 - MIR SINE MIR -59 149 98 182 62 31 0 chr4 19503215 19503247 -164785415 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 20043 32 2 0 chr4 19503251 19506299 -164782363 - L1PA4 LINE L1 -3 6152 3108 642 292 26 26 chr4 19506444 19506670 -164781992 - LTR16B LTR ERVL -13 451 226 522 279 53 84 chr4 19506904 19507604 -164781058 + L1ME3A LINE L1 4670 5347 -799 1754 134 96 20 chr4 19507604 19507947 -164780715 + LTR24C LTR ERV1 242 610 -25 642 189 0 0 chr4 19507947 19508058 -164780604 + AluSg/x SINE Alu 198 308 -2 1454 231 35 66 chr4 19508103 19508619 -164780043 + Charlie2a DNA MER1_type 1586 2085 -777 5201 154 31 35 chr4 19508750 19509657 -164779005 - MER4D LTR ERV1 0 903 1 347 229 0 0 chr4 19509866 19509949 -164778713 + Charlie2 DNA MER1_type 2711 2793 -69 467 303 63 9 chr4 19510081 19510302 -164778360 + L1ME3A LINE L1 5730 5962 -208 24 32 0 0 chr4 19510485 19510516 -164778146 + AT_rich Low_complexity Low_complexity 1 31 0 417 113 70 0 chr4 19510529 19510600 -164778062 + MER50 LTR ERV1 1 76 -658 403 155 0 0 chr4 19510600 19510658 -164778004 - MER50-int LTR ERV1 -3808 3397 3340 629 219 0 9 chr4 19510658 19510772 -164777890 - MER50-int LTR ERV1 -4304 2901 2789 * 6609 134 46 21 chr4 19510769 19512489 -164776173 - MER50-int LTR ERV1 -5357 1848 7 941 149 39 0 chr4 19512489 19512643 -164776019 - MER50 LTR ERV1 -12 722 563 2357 149 31 0 chr4 19512648 19513038 -164775624 - MER50 LTR ERV1 -332 402 1 2508 191 21 12 chr4 19513573 19514054 -164774608 - MER31A LTR ERV1 0 485 1 2196 162 55 0 chr4 19514596 19514942 -164773720 + MLT1A1 LTR MaLR 1 365 0 274 250 52 21 chr4 19515112 19515208 -164773454 - MER103 DNA DNA -40 126 28 2255 82 4 0 chr4 19515382 19515663 -164772999 - AluY SINE Alu -29 282 1 231 299 75 0 chr4 19515990 19516057 -164772605 + MIR3 SINE MIR 126 197 -11 342 45 0 0 chr4 19516148 19516192 -164772470 + (TGGA)n Simple_repeat Simple_repeat 1 44 0 191 245 0 41 chr4 19516270 19516319 -164772343 - L2 LINE L2 0 3272 3226 1265 214 31 0 chr4 19517015 19517244 -164771418 - MER8 DNA MER2_type 0 239 4 331 222 0 12 chr4 19517711 19517792 -164770870 - MER116 DNA Mariner 0 80 1 2152 68 0 0 chr4 19518056 19518319 -164770343 - AluY SINE Alu -11 300 38 354 138 0 0 chr4 19518419 19518477 -164770185 + (CA)n Simple_repeat Simple_repeat 2 59 0 1284 281 41 20 chr4 19518554 19519042 -164769620 - L1MC/D LINE L1 -2014 5794 5297 477 312 57 76 chr4 19519362 19519875 -164768787 - L1MC/D LINE L1 -1210 4936 4434 205 171 0 0 chr4 19519900 19519935 -164768727 + (CATATA)n Simple_repeat Simple_repeat 1 35 0 524 308 41 31 chr4 19520018 19520437 -164768225 - L1MC/D LINE L1 -1813 4333 3911 622 319 30 5 chr4 19520495 19520723 -164767939 - MIR SINE MIR 0 262 28 971 172 10 35 chr4 19521452 19521650 -164767012 - AluSg/x SINE Alu 0 310 118 2579 53 0 31 chr4 19522087 19522408 -164766254 + AluY SINE Alu 1 311 0 25 31 0 0 chr4 19522514 19522546 -164766116 + AT_rich Low_complexity Low_complexity 1 32 0 14746 30 3 1 chr4 19522617 19525400 -164763262 - L1PA3 LINE L1 -2 6153 3369 217 151 0 94 chr4 19525502 19525555 -164763107 - MIR SINE MIR -65 143 96 1554 272 126 68 chr4 19526322 19527537 -164761125 + HAL1 LINE L1 26 1310 -1197 1473 276 56 20 chr4 19527567 19527958 -164760704 + HAL1 LINE L1 1374 1791 -716 2734 133 38 21 chr4 19527958 19528379 -164760283 + MSTA LTR MaLR 1 428 0 1473 276 56 20 chr4 19528379 19528524 -164760138 + HAL1 LINE L1 1791 1929 -578 359 269 221 14 chr4 19528536 19528750 -164759912 + HAL1 LINE L1 1977 2145 -362 291 28 0 0 chr4 19528750 19528786 -164759876 + (TG)n Simple_repeat Simple_repeat 2 37 0 359 269 221 14 chr4 19528786 19528865 -164759797 + HAL1 LINE L1 2145 2331 -176 2521 145 8 0 chr4 19529776 19530148 -164758514 - THE1C LTR MaLR 0 375 1 993 173 152 20 chr4 19531083 19531280 -164757382 + MER58A DNA MER1_type 2 224 0 455 277 101 19 chr4 19531413 19531572 -164757090 - MER5A DNA MER1_type 0 189 7 568 323 69 5 chr4 19531581 19531798 -164756864 + MIR SINE MIR 20 250 -12 180 0 0 0 chr4 19531974 19531994 -164756668 + (T)n Simple_repeat Simple_repeat 1 20 0 4558 180 50 4 chr4 19532231 19533200 -164755462 - L1 LINE L1 -2557 3589 2577 2182 161 41 34 chr4 19533949 19534360 -164754302 + MLT2D LTR ERVL 1 414 0 543 230 58 92 chr4 19534384 19534645 -164754017 - L2 LINE L2 -5 3308 3057 1092 187 50 11 chr4 19534709 19535636 -164753026 - L1MD1 LINE L1 -2 6634 5673 624 50 0 0 chr4 19535637 19535717 -164752945 + (TA)n Simple_repeat Simple_repeat 2 81 0 548 311 26 21 chr4 19535822 19536015 -164752647 + LTR16C LTR ERVL 297 490 -1 10369 30 0 1 chr4 19536073 19538010 -164750652 + L1PA3 LINE L1 4219 6155 0 22 0 0 0 chr4 19538010 19538032 -164750630 + AT_rich Low_complexity Low_complexity 1 22 0 2247 239 42 8 chr4 19538185 19538835 -164749827 - L1MD1 LINE L1 -1131 5409 4738 417 201 0 125 chr4 19538836 19538980 -164749682 - L1MD1 LINE L1 -1944 4596 4471 2980 244 128 38 chr4 19538987 19539856 -164748806 - L1MD1 LINE L1 -5576 964 18 635 316 15 5 chr4 19540271 19540477 -164748185 + MIR SINE MIR 45 252 -10 1028 264 77 22 chr4 19540691 19541092 -164747570 - MLT1J LTR MaLR -20 491 69 352 267 36 67 chr4 19541380 19541423 -164747239 + MIR SINE MIR 75 118 -144 1002 209 62 24 chr4 19541423 19541634 -164747028 + MER20 DNA MER1_type 1 219 0 352 267 36 67 chr4 19541634 19541755 -164746907 + MIR SINE MIR 118 234 -28 3709 154 16 6 chr4 19541851 19542474 -164746188 - L1PA16 LINE L1 -14 6152 5524 354 304 55 28 chr4 19542569 19542750 -164745912 - MIR SINE MIR -56 206 21 2152 88 3 59 chr4 19542807 19543137 -164745525 + AluSq SINE Alu 1 313 0 1858 210 25 52 chr4 19543353 19543829 -164744833 - MLT1C LTR MaLR 0 467 5 23 0 0 0 chr4 19544125 19544148 -164744514 + AT_rich Low_complexity Low_complexity 1 23 0 186 103 0 0 chr4 19544782 19544811 -164743851 + (TG)n Simple_repeat Simple_repeat 2 30 0 314 289 126 0 chr4 19544917 19545052 -164743610 - MIR SINE MIR -4 258 107 199 347 10 20 chr4 19545270 19545368 -164743294 - MIR SINE MIR -163 99 3 2479 86 0 3 chr4 19545784 19546098 -164742564 + AluSq SINE Alu 1 313 0 2340 120 141 0 chr4 19547552 19547927 -164740735 - MSTA LTR MaLR 0 428 1 2544 182 66 26 chr4 19547932 19548432 -164740230 - MLT2B1 LTR ERVL 0 520 1 537 331 38 25 chr4 19548745 19549062 -164739600 + L1ME3A LINE L1 5625 5945 -225 2291 113 3 0 chr4 19549515 19549826 -164738836 - AluSx SINE Alu 0 312 1 253 246 16 0 chr4 19550014 19550075 -164738587 - L2 LINE L2 -8 3305 3244 1862 148 6 35 chr4 19551160 19551471 -164737191 - AluJo SINE Alu -10 302 1 337 167 0 17 chr4 19551474 19551534 -164737128 - MIR SINE MIR -98 164 106 187 31 62 0 chr4 19551547 19551579 -164737083 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 628 250 47 25 chr4 19551767 19551964 -164736698 - MIR SINE MIR -44 218 18 2423 80 3 0 chr4 19552060 19552359 -164736303 - AluSp SINE Alu -13 300 1 344 154 0 0 chr4 19552511 19552563 -164736099 - MER5B DNA MER1_type 0 178 127 3365 140 23 4 chr4 19552568 19553095 -164735567 + L1MC1 LINE L1 5779 6315 -18 715 182 16 0 chr4 19553150 19553271 -164735391 - MER5B DNA MER1_type -48 130 8 383 285 57 62 chr4 19553530 19553723 -164734939 + L2 LINE L2 2892 3083 -189 423 382 19 56 chr4 19554021 19554343 -164734319 + L2 LINE L2 2963 3272 0 240 159 23 0 chr4 19554340 19554384 -164734278 + MIR SINE MIR 218 262 0 * 26811 41 7 6 chr4 19555095 19558382 -164730280 + L1P LINE L1 4 3294 -2852 189 74 0 0 chr4 19558484 19558511 -164730151 + (TCCC)n Simple_repeat Simple_repeat 3 29 0 330 221 70 12 chr4 19559202 19559288 -164729374 - MIR SINE MIR -93 169 79 226 204 93 0 chr4 19560869 19560923 -164727739 - L2 LINE L2 -37 3276 3218 832 240 44 99 chr4 19561700 19562196 -164726466 + MLT1H LTR MaLR 79 547 -2 2875 146 12 32 chr4 19563209 19563703 -164724959 + MER31A LTR ERV1 1 484 -1 592 263 113 31 chr4 19564649 19564976 -164723686 + MLT1H LTR MaLR 183 536 -13 239 269 39 0 chr4 19565459 19565511 -164723151 + L2 LINE L2 3122 3175 -97 256 294 37 61 chr4 19565706 19565869 -164722793 - L3b LINE CR1 -134 1449 1291 601 270 60 75 chr4 19566081 19566333 -164722329 - MIR SINE MIR -12 250 3 217 294 228 11 chr4 19566445 19566537 -164722125 + MIR SINE MIR 38 149 -59 25 51 0 0 chr4 19566611 19566650 -164722012 + AT_rich Low_complexity Low_complexity 1 39 0 1699 214 28 21 chr4 19566806 19567193 -164721469 + MLT1B LTR MaLR 1 390 0 242 314 12 12 chr4 19567615 19567701 -164720961 + MIR3 SINE MIR 77 162 -46 487 250 70 17 chr4 19567740 19567912 -164720750 - Charlie8 DNA MER1_type -2144 273 93 6625 59 7 39 chr4 19568204 19569134 -164719528 - SVA Other Other -4 1382 483 192 217 0 0 chr4 19569296 19569342 -164719320 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 326 300 25 8 chr4 19569429 19569549 -164719113 - LTR16C LTR ERVL -2 489 368 198 167 0 0 chr4 19569570 19569606 -164719056 + (TA)n Simple_repeat Simple_repeat 2 37 0 252 164 60 30 chr4 19569613 19569680 -164718982 - MLT1H LTR MaLR -4 545 477 432 191 0 0 chr4 19569712 19569801 -164718861 + (TA)n Simple_repeat Simple_repeat 1 89 0 355 276 11 11 chr4 19570460 19570547 -164718115 + LTR67 LTR ERVL 45 131 -426 487 309 43 16 chr4 19570644 19570832 -164717830 + LTR67 LTR ERVL 277 469 -88 39 38 0 0 chr4 19570962 19571015 -164717647 + AT_rich Low_complexity Low_complexity 1 53 0 2284 118 0 0 chr4 19571047 19571351 -164717311 + AluSx SINE Alu 1 304 -8 271 198 49 37 chr4 19571405 19571486 -164717176 - MLT1H LTR MaLR -4 545 464 413 364 70 37 chr4 19571569 19572115 -164716547 + L2 LINE L2 2736 3310 -3 2027 169 64 6 chr4 19572492 19572835 -164715827 + MLT1A1 LTR MaLR 1 363 -2 377 279 45 45 chr4 19572901 19573055 -164715607 + MLT1L LTR MaLR 15 168 -447 343 286 153 17 chr4 19573071 19573312 -164715350 - L1ME4a LINE L1 -45 6076 5803 1849 218 92 5 chr4 19573358 19573784 -164714878 - MLT1C LTR MaLR 0 467 5 515 273 92 49 chr4 19573813 19574232 -164714430 - L1ME4a LINE L1 -386 5735 5291 2437 75 0 7 chr4 19574327 19574643 -164714019 - L1PA5 LINE L1 -6 6148 5836 28 71 0 0 chr4 19574928 19574984 -164713678 + AT_rich Low_complexity Low_complexity 1 56 0 * 613 301 122 25 chr4 19574945 19575536 -164713126 - L1ME4a LINE L1 -1120 5026 4374 22 35 0 0 chr4 19575672 19575701 -164712961 + AT_rich Low_complexity Low_complexity 1 29 0 425 269 20 60 chr4 19576330 19576479 -164712183 + MIR SINE MIR 27 169 -93 2578 46 0 7 chr4 19579263 19579568 -164709094 - AluY SINE Alu -8 303 1 1778 177 2 57 chr4 19579693 19579830 -164708832 - MLT1B LTR MaLR 0 390 247 1936 146 24 0 chr4 19579830 19580125 -164708537 - AluSx SINE Alu -1 311 10 1778 177 2 57 chr4 19580125 19580393 -164708269 - MLT1B LTR MaLR -143 247 7 407 202 242 24 chr4 19580449 19580573 -164708089 + MIR SINE MIR 111 261 -1 1903 135 66 0 chr4 19580643 19580932 -164707730 - AluSx SINE Alu -4 308 1 432 0 0 0 chr4 19581710 19581758 -164706904 + (CA)n Simple_repeat Simple_repeat 2 49 0 597 278 59 6 chr4 19581758 19581927 -164706735 + MIR SINE MIR 32 209 -53 1787 43 9 0 chr4 19581977 19582208 -164706454 - L1PA4 LINE L1 -184 5971 5739 797 21 0 0 chr4 19582208 19582295 -164706367 + L1PA4 LINE L1 6055 6147 -8 4416 145 27 10 chr4 19582665 19583453 -164705209 - Tigger1 DNA MER2_type 0 2418 1618 4599 158 40 4 chr4 19583553 19584380 -164704282 - Tigger1 DNA MER2_type -1561 857 1 482 144 27 9 chr4 19584852 19584963 -164703699 + CT-rich Low_complexity Low_complexity 4 116 0 1719 164 4 7 chr4 19584968 19585242 -164703420 - AluSx SINE Alu -38 274 2 3506 172 103 25 chr4 19585390 19586156 -164702506 - LTR1B LTR ERV1 0 826 1 3107 146 35 6 chr4 19586662 19587211 -164701451 - MER34B LTR ERV1 0 565 1 376 329 13 38 chr4 19587595 19587753 -164700909 + MIR SINE MIR 16 169 -93 24 32 0 0 chr4 19588058 19588089 -164700573 + AT_rich Low_complexity Low_complexity 1 31 0 276 345 101 22 chr4 19588111 19588250 -164700412 - L2 LINE L2 0 3272 3123 343 310 56 15 chr4 19589269 19589465 -164699197 + MIR SINE MIR 2 208 -54 2443 87 3 0 chr4 19589466 19589775 -164698887 + AluSp SINE Alu 1 310 -3 280 219 145 33 chr4 19590228 19590357 -164698305 - MIR SINE MIR -62 146 6 1099 185 5 0 chr4 19590660 19590844 -164697818 - MER5A DNA MER1_type -4 185 1 964 160 5 58 chr4 19590893 19591081 -164697581 + AluJb SINE Alu 120 297 -15 437 235 35 2 chr4 19591081 19591189 -164697473 + MER5B DNA MER1_type 55 176 -13 587 234 148 39 chr4 19591435 19591772 -164696890 + MER68 LTR ERV1 3 376 -186 3142 129 57 6 chr4 19591932 19592473 -164696189 + LTR24B LTR ERV1 1 569 -7 190 280 20 0 chr4 19592980 19593030 -164695632 + L3 LINE CR1 1524 1574 -3 2523 81 0 0 chr4 19593137 19593447 -164695215 + AluY SINE Alu 1 310 -1 266 333 102 0 chr4 19593483 19593591 -164695071 - MIR3 SINE MIR -54 154 36 205 237 203 0 chr4 19593673 19593732 -164694930 - MIR SINE MIR -16 246 176 324 267 23 0 chr4 19593860 19593946 -164694716 - MIR SINE MIR -3 259 172 323 267 84 46 chr4 19594240 19594371 -164694291 + MIR SINE MIR 29 164 -98 2059 136 33 41 chr4 19594706 19595095 -164693567 - MLT1B LTR MaLR -2 388 3 304 243 69 48 chr4 19595188 19595377 -164693285 + L1MC5 LINE L1 7331 7523 -438 736 279 21 21 chr4 19595575 19595815 -164692847 + L1MEc LINE L1 40 279 -6117 1681 102 8 0 chr4 19595918 19596154 -164692508 + THE1B LTR MaLR 127 364 0 687 278 75 18 chr4 19596307 19596534 -164692128 + MIR SINE MIR 21 260 -2 21 0 0 0 chr4 19596534 19596555 -164692107 + AT_rich Low_complexity Low_complexity 1 21 0 224 313 205 9 chr4 19596593 19596705 -164691957 - MIR SINE MIR -108 154 21 278 253 12 24 chr4 19596901 19596984 -164691678 - MER63 DNA MER1_type -5 1057 976 6370 98 6 9 chr4 19597139 19598125 -164690537 + L1PA11 LINE L1 5180 6162 -12 183 42 0 0 chr4 19598151 19598175 -164690487 + (GA)n Simple_repeat Simple_repeat 2 25 0 596 259 4 122 chr4 19598248 19598642 -164690020 + L1MC5 LINE L1 6672 7000 -961 1017 193 113 58 chr4 19598642 19598968 -164689694 - MER2 DNA MER2_type 0 344 1 596 259 4 122 chr4 19598968 19599055 -164689607 + L1MC5 LINE L1 7000 7096 -865 2776 269 34 44 chr4 19599256 19599352 -164689310 + L1MEc LINE L1 414 509 -5887 1489 118 45 0 chr4 19599352 19599572 -164689090 + MER30 DNA MER1_type 1 230 0 2776 269 34 44 chr4 19599572 19600819 -164687843 + L1MEc LINE L1 509 1743 -4653 5636 129 12 65 chr4 19600820 19601872 -164686790 + HSMAR2 DNA Mariner 305 1301 -1 609 158 105 0 chr4 19601878 19602011 -164686651 + L1MD1 LINE L1 6088 6234 -8 1553 234 69 28 chr4 19602012 19602854 -164685808 + L1MEc LINE L1 1850 2690 -3525 332 233 14 0 chr4 19602858 19602931 -164685731 - MIR SINE MIR -187 75 2 569 236 38 38 chr4 19604415 19604572 -164684090 + MIR SINE MIR 103 259 -3 449 211 28 0 chr4 19604647 19604756 -164683906 - LTR67 LTR ERVL 0 557 446 469 279 25 12 chr4 19604883 19605044 -164683618 - LTR67 LTR ERVL -306 251 89 197 260 169 0 chr4 19605079 19605156 -164683506 - L2 LINE L2 -86 3186 3097 266 351 55 30 chr4 19605619 19605821 -164682841 - L2 LINE L2 -179 3093 2887 304 273 76 82 chr4 19606117 19606458 -164682204 + MLT1J LTR MaLR 28 366 -145 993 180 159 63 chr4 19606919 19607296 -164681366 - MLT1C LTR MaLR 0 467 1 282 299 145 8 chr4 19608341 19608458 -164680204 + MIR SINE MIR 21 153 -109 1139 84 0 6 chr4 19608601 19608780 -164679882 + (TCTA)n Simple_repeat Simple_repeat 2 179 0 180 296 74 0 chr4 19608931 19609012 -164679650 - MIR3 SINE MIR -3 205 119 189 154 0 0 chr4 19609142 19609181 -164679481 + (ATG)n Simple_repeat Simple_repeat 2 40 0 637 255 56 31 chr4 19609232 19609428 -164679234 - MIR SINE MIR -60 202 2 201 147 0 0 chr4 19609450 19609484 -164679178 + (ATG)n Simple_repeat Simple_repeat 2 35 0 635 281 46 38 chr4 19609491 19609729 -164678933 - MIR SINE MIR -10 252 13 247 294 108 15 chr4 19610388 19610592 -164678070 - LTR33A LTR ERVL 0 523 301 1341 189 0 54 chr4 19610602 19610935 -164677727 + MER33 DNA MER1_type 9 323 -1 628 254 242 21 chr4 19610943 19611328 -164677334 - LTR50 LTR ERVL -323 472 3 248 265 68 38 chr4 19611337 19611469 -164677193 - Charlie8 DNA MER1_type -2243 174 39 243 200 38 38 chr4 19611474 19611554 -164677108 + MIR3 SINE MIR 126 205 -3 387 285 53 94 chr4 19612949 19613289 -164675373 - L2 LINE L2 -1 3312 2987 2599 90 25 6 chr4 19614825 19615182 -164673480 - THE1B LTR MaLR 0 364 1 288 77 0 0 chr4 19615692 19615731 -164672931 + (T)n Simple_repeat Simple_repeat 1 39 0 21 57 0 19 chr4 19617517 19617536 -164671126 + AT_rich Low_complexity Low_complexity 1 19 -33 1581 113 162 49 chr4 19617536 19617863 -164670799 - THE1B LTR MaLR 0 364 1 21 57 0 19 chr4 19617863 19617896 -164670766 + AT_rich Low_complexity Low_complexity 19 52 0 378 352 71 24 chr4 19617954 19618417 -164670245 - L1M4 LINE L1 -1093 5053 4569 292 324 153 6 chr4 19618443 19618613 -164670049 - MIR SINE MIR 0 262 68 21 36 0 0 chr4 19618711 19618739 -164669923 + AT_rich Low_complexity Low_complexity 1 28 0 346 197 0 0 chr4 19618914 19618985 -164669677 + L1M4 LINE L1 4538 4608 -1538 739 303 54 92 chr4 19618985 19619262 -164669400 + L1M4 LINE L1 3712 3998 -2148 633 110 7 132 chr4 19619262 19619398 -164669264 - FLAM_C SINE Alu -14 119 1 739 303 54 92 chr4 19619398 19619754 -164668908 + L1M4 LINE L1 3998 4321 -1825 2128 126 10 0 chr4 19620406 19620707 -164667955 - AluSx SINE Alu -8 304 1 2173 129 0 0 chr4 19620913 19621215 -164667447 - AluSg SINE Alu -8 302 1 341 280 283 4 chr4 19621530 19621719 -164666943 + MIR SINE MIR 11 249 -13 290 285 207 14 chr4 19622036 19622331 -164666331 + L1ME4a LINE L1 5770 6121 0 203 307 147 13 chr4 19622816 19622891 -164665771 + MIR SINE MIR 68 152 -110 1802 169 37 8 chr4 19622902 19623257 -164665405 + MLT1A1 LTR MaLR 1 365 0 425 319 50 0 chr4 19623367 19623527 -164665135 + MIR SINE MIR 20 187 -75 543 283 88 36 chr4 19623553 19623804 -164664858 - MER102b DNA MER1_type -20 321 58 334 214 149 66 chr4 19623841 19624152 -164664510 + MLT1H LTR MaLR 58 370 -39 1154 99 5 35 chr4 19624442 19624643 -164664019 + THE1C-int LTR MaLR 1385 1579 -1 2101 147 16 31 chr4 19624644 19625025 -164663637 + THE1C LTR MaLR 1 375 0 214 389 74 18 chr4 19625236 19625465 -164663197 - L2 LINE L2 -182 3090 2849 440 303 170 45 chr4 19625514 19626043 -164662619 + MLT1G1 LTR MaLR 1 595 0 1080 188 103 32 chr4 19626084 19626454 -164662208 + MSTC LTR MaLR 1 426 -2 483 113 0 0 chr4 19626610 19626681 -164661981 + L1PA5 LINE L1 6082 6152 -2 546 261 66 127 chr4 19626870 19627342 -164661320 + LTR16A1 LTR ERVL 15 457 0 259 288 90 9 chr4 19627682 19627793 -164660869 + MIR SINE MIR 131 250 -12 232 323 91 0 chr4 19627800 19627899 -164660763 + L2 LINE L2 3138 3245 -27 2803 149 32 38 chr4 19627967 19628442 -164660220 + MER70A LTR ERVL 1 472 0 21 57 0 0 chr4 19630156 19630191 -164658471 + AT_rich Low_complexity Low_complexity 1 35 0 188 219 0 0 chr4 19631058 19631099 -164657563 + L3b LINE CR1 1279 1319 -264 246 167 0 0 chr4 19632352 19632412 -164656250 + (TG)n Simple_repeat Simple_repeat 1 60 0 317 307 97 0 chr4 19633577 19633691 -164654971 - MER117 DNA MER1_type -10 187 63 435 246 14 56 chr4 19633714 19633856 -164654806 + L2 LINE L2 3134 3269 -3 208 273 55 55 chr4 19636572 19636682 -164651980 - MIR SINE MIR -28 234 125 1634 197 7 0 chr4 19636852 19637157 -164651505 + AluJb SINE Alu 1 307 -5 180 304 18 0 chr4 19637205 19637261 -164651401 + L2 LINE L2 3001 3057 -215 354 261 11 11 chr4 19637786 19637878 -164650784 + L2 LINE L2 3221 3312 -1 25 31 0 0 chr4 19638217 19638249 -164650413 + AT_rich Low_complexity Low_complexity 1 32 0 313 198 20 20 chr4 19638498 19638599 -164650063 + CT-rich Low_complexity Low_complexity 3 103 0 558 327 24 6 chr4 19638656 19638824 -164649838 + MIR3 SINE MIR 1 171 -37 246 193 0 0 chr4 19639339 19639396 -164649266 + (CA)n Simple_repeat Simple_repeat 1 57 0 192 48 71 0 chr4 19639460 19639502 -164649160 + A-rich Low_complexity Low_complexity 2 46 0 232 320 32 115 chr4 19640205 19640517 -164648145 + L2 LINE L2 2926 3211 -61 344 275 73 51 chr4 19640589 19640719 -164647943 + MER5A DNA MER1_type 7 144 -45 3578 159 113 6 chr4 19640719 19641356 -164647306 + MER39 LTR ERV1 1 705 -2 344 275 73 51 chr4 19641356 19641403 -164647259 + MER5A DNA MER1_type 144 188 -1 3325 152 29 0 chr4 19641940 19642459 -164646203 + L1PA16 LINE L1 5629 6162 -4 197 241 74 0 chr4 19642931 19642985 -164645677 + MIR SINE MIR 151 208 -54 391 236 45 11 chr4 19643081 19643170 -164645492 - L2 LINE L2 -12 3260 3169 468 51 0 0 chr4 19644555 19644614 -164644048 + (TGGA)n Simple_repeat Simple_repeat 3 61 0 483 185 157 0 chr4 19645270 19645378 -164643284 + MER58B DNA MER1_type 217 341 0 425 160 87 93 chr4 19647241 19647391 -164641271 + LTR33A LTR ERVL 1 149 -374 1888 189 62 36 chr4 19647392 19647842 -164640820 - MLT1C LTR MaLR 0 467 6 445 261 113 41 chr4 19647853 19648141 -164640521 + LTR33A LTR ERVL 147 523 0 561 306 67 0 chr4 19648230 19648439 -164640223 + MIR SINE MIR 40 262 0 303 71 0 0 chr4 19648532 19648574 -164640088 + (TG)n Simple_repeat Simple_repeat 2 43 0 1863 159 75 0 chr4 19648575 19648895 -164639767 - MER2 DNA MER2_type 0 345 2 481 205 26 113 chr4 19649337 19649488 -164639174 - MLT2C1 LTR ERVL 0 397 260 402 229 0 57 chr4 19649453 19649558 -164639104 - Tigger7 DNA MER2_type -30 2457 2359 * 2040 159 30 0 chr4 19649551 19649884 -164638778 - Tigger7 DNA MER2_type -1940 547 205 1310 205 31 0 chr4 19649934 19650163 -164638499 - Tigger7 DNA MER2_type -2239 248 13 461 278 124 72 chr4 19650450 19650756 -164637906 - L2 LINE L2 -19 3253 2932 675 267 16 53 chr4 19651842 19652089 -164636573 - L2 LINE L2 0 3313 3076 484 304 35 6 chr4 19652119 19652289 -164636373 + MLT1D LTR MaLR 1 175 -330 2705 194 10 41 chr4 19652289 19652871 -164635791 + MLT2B3 LTR ERVL 1 451 -2 1276 210 89 30 chr4 19652871 19653191 -164635471 + MLT1D LTR MaLR 166 505 0 680 127 196 13 chr4 19653232 19653390 -164635272 + MER53 DNA DNA 3 189 0 331 250 19 115 chr4 19653398 19653606 -164635056 - L2 LINE L2 -312 3001 2814 240 108 0 0 chr4 19653606 19653643 -164635019 + HSMAR1 DNA Mariner 1 37 -1250 2333 86 39 6 chr4 19653643 19653980 -164634682 + L1PB1 LINE L1 5440 5787 -364 1222 126 45 9 chr4 19654000 19654222 -164634440 + L1MA9 LINE L1 6078 6307 -5 197 65 32 0 chr4 19654253 19654284 -164634378 + (TA)n Simple_repeat Simple_repeat 1 32 0 2468 126 3 3 chr4 19654285 19654635 -164634027 + L1PB1 LINE L1 5801 6150 -1 493 104 0 0 chr4 19654645 19654712 -164633950 - MADE1 DNA Mariner -13 67 1 192 200 50 33 chr4 19654731 19654791 -164633871 - L2 LINE L2 -527 2787 2727 181 214 54 0 chr4 19655399 19655455 -164633207 - MIR SINE MIR -125 137 79 248 302 12 0 chr4 19708280 19708366 -164580296 - MER117 DNA MER1_type -106 91 5 2786 58 14 0 chr4 19708414 19708774 -164579888 - L1PA7 LINE L1 0 6154 5790 2243 116 0 10 chr4 19709523 19709833 -164578829 - AluSx SINE Alu -5 307 1 210 247 161 32 chr4 19710266 19710359 -164578303 - MIR SINE MIR -50 212 108 198 263 35 0 chr4 19710761 19710818 -164577844 + MIR SINE MIR 191 249 -13 657 296 24 24 chr4 19710818 19711031 -164577631 - MIR SINE MIR 0 262 50 21 0 0 0 chr4 19711680 19711701 -164576961 + AT_rich Low_complexity Low_complexity 1 21 0 331 347 41 34 chr4 19711817 19711964 -164576698 + L2 LINE L2 3125 3272 0 721 256 30 47 chr4 19712512 19712746 -164575916 - MIR SINE MIR -12 250 21 10310 124 9 37 chr4 19713025 19714885 -164573777 - L1P LINE L1 -1671 4475 2668 342 320 167 0 chr4 19715030 19715186 -164573476 - MIR SINE MIR -80 182 1 384 307 12 48 chr4 19715447 19715613 -164573049 - MIR SINE MIR -61 201 42 847 234 11 0 chr4 19715803 19715991 -164572671 + MER58A DNA MER1_type 35 224 0 1224 80 0 6 chr4 19716358 19716520 -164572142 - AluY SINE Alu -150 161 1 296 351 104 19 chr4 19718035 19718189 -164570473 + MIR3 SINE MIR 35 201 -7 346 216 155 35 chr4 19718760 19718876 -164569786 + L2 LINE L2 3184 3313 0 26 0 0 0 chr4 19718919 19718945 -164569717 + AT_rich Low_complexity Low_complexity 1 26 0 857 260 121 62 chr4 19720639 19721144 -164567518 + MLT1G1 LTR MaLR 45 590 -5 198 103 0 0 chr4 19721387 19721416 -164567246 + (T)n Simple_repeat Simple_repeat 1 29 0 274 266 0 0 chr4 19721419 19721483 -164567179 + MLT1K LTR MaLR 525 588 0 1884 213 60 14 chr4 19721623 19722106 -164566556 - MLT1D LTR MaLR 0 505 1 323 335 142 7 chr4 19722496 19722651 -164566011 + MIR SINE MIR 11 186 -76 294 269 0 37 chr4 19723165 19723273 -164565389 + MLT1H LTR MaLR 59 162 -387 2701 182 62 10 chr4 19723631 19724213 -164564449 + L1MB8 LINE L1 5558 6169 -9 21 36 0 0 chr4 19725065 19725093 -164563569 + AT_rich Low_complexity Low_complexity 1 28 0 9185 162 16 25 chr4 19727679 19730165 -164558497 + L1P3 LINE L1 416 2934 -3527 426 293 45 25 chr4 19731066 19731223 -164557439 + L1MD2 LINE L1 5462 5621 -2187 321 327 65 39 chr4 19731231 19731491 -164557171 + L1MD2 LINE L1 5725 5991 -368 403 318 45 17 chr4 19731588 19731764 -164556898 - MLT1J2 LTR MaLR -14 436 256 207 69 0 0 chr4 19733029 19733058 -164555604 + (TA)n Simple_repeat Simple_repeat 2 30 0 1473 184 62 7 chr4 19733425 19733713 -164554949 + AluJo SINE Alu 1 304 -8 374 324 29 67 chr4 19734092 19734330 -164554332 - MIR SINE MIR -1 261 33 429 200 59 0 chr4 19734466 19734551 -164554111 - MER91 DNA MER1_type -61 129 40 181 340 0 0 chr4 19734800 19734847 -164553815 - L2 LINE L2 -82 3190 3144 2320 179 65 7 chr4 19735798 19736201 -164552461 + MSTB LTR MaLR 1 426 0 789 301 4 4 chr4 19736808 19737037 -164551625 + MIR SINE MIR 34 262 0 2021 125 7 0 chr4 19737823 19738104 -164550558 + AluSp SINE Alu 3 285 -28 2012 120 3 0 chr4 19738379 19738697 -164549965 + AluSx SINE Alu 1 319 0 213 39 0 0 chr4 19738825 19738851 -164549811 + (CA)n Simple_repeat Simple_repeat 2 27 0 336 278 75 29 chr4 19739132 19739305 -164549357 + L1MA9 LINE L1 6084 6264 -48 905 138 0 0 chr4 19739325 19739455 -164549207 - FLAM_C SINE Alu -8 135 6 199 54 54 0 chr4 19739477 19739514 -164549148 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 326 331 31 0 chr4 19739533 19739663 -164548999 - MIR SINE MIR -26 236 103 369 338 14 7 chr4 19740044 19740189 -164548473 + L2 LINE L2 2722 2867 -447 399 260 114 8 chr4 19740492 19740615 -164548047 + L2 LINE L2 3178 3313 0 349 264 62 23 chr4 19741130 19741259 -164547403 - MIR SINE MIR -54 208 75 516 245 77 0 chr4 19741711 19741854 -164546808 + MIR SINE MIR 71 224 -38 194 250 105 13 chr4 19742896 19742972 -164545690 + L2 LINE L2 2708 2790 -524 196 188 0 42 chr4 19743184 19743232 -164545430 - L2 LINE L2 0 3313 3268 453 83 125 14 chr4 19743506 19743578 -164545084 + MADE1 DNA Mariner 1 80 0 1634 191 3 23 chr4 19743686 19743985 -164544677 + AluJo SINE Alu 5 297 -15 368 367 8 0 chr4 19745351 19745471 -164543191 - L2 LINE L2 -40 3232 3112 2287 122 91 49 chr4 19746393 19746802 -164541860 - MSTA LTR MaLR -2 426 1 1581 194 18 0 chr4 19749080 19749363 -164539299 + AluJo SINE Alu 6 293 -19 210 329 14 0 chr4 19750859 19750929 -164537733 + L2 LINE L2 3242 3312 -1 859 271 20 24 chr4 19750975 19751222 -164537440 - MIR SINE MIR 0 262 17 446 200 285 38 chr4 19751578 19751749 -164536913 - MIR SINE MIR -17 245 34 2403 138 11 27 chr4 19752108 19752478 -164536184 + THE1B LTR MaLR 1 364 0 1146 209 5 14 chr4 19752829 19753039 -164535623 + MER63A DNA MER1_type 3 210 0 180 312 46 73 chr4 19753173 19753282 -164535380 + L2 LINE L2 3155 3260 -12 2164 176 28 0 chr4 19753650 19754003 -164534659 + MLT1A1 LTR MaLR 3 365 0 2329 103 0 6 chr4 19754836 19755147 -164533515 - AluSc SINE Alu 0 309 1 1458 195 53 55 chr4 19755285 19755726 -164532936 + MLT1C LTR MaLR 13 498 -7 1801 256 84 57 chr4 19756563 19757158 -164531504 - MLT1E3 LTR MaLR -13 611 1 532 332 59 13 chr4 19757418 19757656 -164531006 + MIR SINE MIR 11 259 -3 1305 247 60 11 chr4 19757806 19758154 -164530508 - MLT1A1 LTR MaLR 0 365 1 739 210 55 45 chr4 19758516 19758716 -164529946 + MIR SINE MIR 53 254 -8 320 152 15 0 chr4 19758768 19758834 -164529828 + CT-rich Low_complexity Low_complexity 2 68 0 594 307 22 26 chr4 19761064 19761292 -164527370 - MIR SINE MIR -34 228 2 180 77 0 0 chr4 19761788 19761814 -164526848 + (CCTG)n Simple_repeat Simple_repeat 2 27 0 * 554 191 25 29 chr4 19761811 19762052 -164526610 + CT-rich Low_complexity Low_complexity 1 240 0 1088 140 38 11 chr4 19762628 19762814 -164525848 + MER20 DNA MER1_type 24 214 -5 233 290 89 40 chr4 19763516 19763640 -164525022 - MIR SINE MIR -98 164 35 321 68 0 0 chr4 19763773 19763817 -164524845 + (CA)n Simple_repeat Simple_repeat 1 44 0 1152 209 32 12 chr4 19764063 19764312 -164524350 - L1MD2 LINE L1 -1 6358 6105 236 329 61 12 chr4 19764475 19764557 -164524105 - L2 LINE L2 -81 3191 3106 21 0 0 0 chr4 19764606 19764627 -164524035 + AT_rich Low_complexity Low_complexity 1 21 0 204 243 0 86 chr4 19765469 19765539 -164523123 - L2 LINE L2 -21 3292 3229 200 233 75 88 chr4 19765797 19765956 -164522706 - L2 LINE L2 -216 3056 2900 * 291 281 25 94 chr4 19765953 19766113 -164522549 + MIR SINE MIR 36 184 -78 550 259 6 37 chr4 19766250 19766434 -164522228 + MLT1E LTR MaLR 22 196 -359 4930 170 35 28 chr4 19767216 19768176 -164520486 + L1P LINE L1 11 977 -5169 17393 98 3 5 chr4 19768180 19770655 -164518007 + L1P LINE L1 1158 3627 -2519 489 362 18 9 chr4 19771056 19771280 -164517382 + MIR SINE MIR 37 262 0 23 0 0 0 chr4 19771810 19771833 -164516829 + AT_rich Low_complexity Low_complexity 1 23 0 282 225 101 94 chr4 19772337 19772475 -164516187 + MIR SINE MIR 31 169 -93 433 345 56 40 chr4 19773120 19773369 -164515293 + MIR SINE MIR 2 254 -8 408 40 0 0 chr4 19775793 19775843 -164512819 + (TA)n Simple_repeat Simple_repeat 1 50 0 210 37 0 0 chr4 19775842 19775869 -164512793 + (CA)n Simple_repeat Simple_repeat 2 28 0 * 183 204 0 0 chr4 19776802 19776851 -164511811 + A-rich Low_complexity Low_complexity 1 49 0 1058 231 77 5 chr4 19777928 19778136 -164510526 - MER58A DNA MER1_type 0 224 2 312 335 31 25 chr4 19778327 19778488 -164510174 + MIR3 SINE MIR 24 185 -23 347 56 19 0 chr4 19778491 19778545 -164510117 + (TTTTG)n Simple_repeat Simple_repeat 2 56 0 223 287 160 0 chr4 19778607 19778701 -164509961 + MIR SINE MIR 98 206 -56 2006 143 0 10 chr4 19778886 19779179 -164509483 + AluSx SINE Alu 1 290 -22 255 273 39 13 chr4 19779480 19779557 -164509105 - MIR SINE MIR -98 164 86 180 97 0 0 chr4 19779845 19779876 -164508786 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 1426 197 59 36 chr4 19780294 19780651 -164508011 + MLT1A1 LTR MaLR 1 501 -4 234 320 169 48 chr4 19781070 19781301 -164507361 - MIR SINE MIR 0 262 4 21 0 0 0 chr4 19781694 19781715 -164506947 + AT_rich Low_complexity Low_complexity 1 21 0 396 267 119 87 chr4 19782028 19782339 -164506323 - LTR33A LTR ERVL 0 523 203 216 296 120 21 chr4 19782835 19782977 -164505685 - L3b LINE CR1 -123 1460 1305 881 196 103 14 chr4 19783156 19783370 -164505292 - MIR SINE MIR -21 241 9 372 276 0 0 chr4 19784117 19784204 -164504458 + L2 LINE L2 3186 3272 0 201 133 0 0 chr4 19784252 19784282 -164504380 + (TGG)n Simple_repeat Simple_repeat 2 31 0 192 288 14 129 chr4 19784305 19784444 -164504218 - MIR SINE MIR -65 197 75 533 189 45 0 chr4 19784660 19784771 -164503891 - MER20 DNA MER1_type -103 116 1 322 240 0 60 chr4 19785058 19785158 -164503504 - L1MC4 LINE L1 -1339 6703 6610 219 114 0 0 chr4 19785737 19785772 -164502890 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 411 299 43 6 chr4 19785865 19786029 -164502633 + MIR SINE MIR 87 256 -6 546 242 45 22 chr4 19786051 19786229 -164502433 + Charlie8 DNA MER1_type 3 184 -2233 183 304 203 0 chr4 19786480 19786559 -164502103 - L2 LINE L2 -8 3305 3211 774 319 138 18 chr4 19787014 19787397 -164501265 - L2 LINE L2 -338 2976 2548 346 185 0 0 chr4 19787468 19787533 -164501129 - Charlie5 DNA MER1_type -29 2583 2519 2511 212 60 24 chr4 19787569 19788325 -164500337 - Charlie5 DNA MER1_type -1829 783 1 2562 50 0 3 chr4 19788551 19788854 -164499808 + AluY SINE Alu 1 302 -9 409 275 74 62 chr4 19789340 19789584 -164499078 - MIR SINE MIR -9 253 7 305 303 10 10 chr4 19789620 19789719 -164498943 - L2 LINE L2 -2 3270 3172 1762 96 11 23 chr4 19791694 19791955 -164496707 - AluSg SINE Alu -5 305 48 262 338 47 14 chr4 19793088 19793236 -164495426 + MIR SINE MIR 110 262 0 527 87 39 12 chr4 19793604 19793838 -164494824 + AluSx SINE Alu 1 308 -1 1362 225 15 18 chr4 19793943 19794276 -164494386 - MER58B DNA MER1_type -1 340 9 479 216 30 52 chr4 19795158 19795292 -164493370 - MER5A DNA MER1_type -22 167 37 2201 68 17 27 chr4 19795491 19795616 -164493046 + AluY SINE Alu 1 126 -185 459 0 0 0 chr4 19795616 19795667 -164492995 + (CA)n Simple_repeat Simple_repeat 2 52 0 2201 68 17 27 chr4 19795667 19795836 -164492826 + AluY SINE Alu 126 292 -19 310 264 65 32 chr4 19796102 19796257 -164492405 - L2 LINE L2 -58 3255 3096 240 302 12 35 chr4 19796269 19796355 -164492307 + L2 LINE L2 3230 3313 0 769 285 88 36 chr4 19796404 19797015 -164491647 - L1MC4a LINE L1 -1910 5898 5256 191 309 58 89 chr4 19797235 19797426 -164491236 - L3 LINE CR1 -1 1576 1392 478 139 0 50 chr4 19798263 19798329 -164490333 + MER53 DNA DNA 6 67 -122 1270 169 8 37 chr4 19798329 19798572 -164490090 - MER46A DNA MER2_type 0 236 1 478 139 0 50 chr4 19798572 19798606 -164490056 + MER53 DNA DNA 67 101 -88 22 35 0 0 chr4 19798711 19798740 -164489922 + AT_rich Low_complexity Low_complexity 1 29 0 182 88 0 29 chr4 19798887 19798921 -164489741 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 661 263 6 6 chr4 19799319 19799479 -164489183 - MIR SINE MIR -52 210 51 430 337 74 10 chr4 19799827 19800029 -164488633 - MIR SINE MIR 0 262 48 438 306 100 18 chr4 19800061 19800290 -164488372 + MIR SINE MIR 14 261 -1 277 321 12 0 chr4 19800294 19800375 -164488287 + (CTA)n Simple_repeat Simple_repeat 1 82 0 233 331 71 26 chr4 19801234 19801388 -164487274 + L2 LINE L2 2924 3084 -188 361 341 40 23 chr4 19801574 19801747 -164486915 - L2 LINE L2 -192 3080 2905 181 343 0 15 chr4 19801897 19801964 -164486698 + MIR SINE MIR 66 131 -131 495 246 9 80 chr4 19803593 19803817 -164484845 + MLT1H LTR MaLR 23 230 -319 237 311 22 11 chr4 19804069 19804159 -164484503 + L2 LINE L2 3175 3265 -48 1776 198 3 14 chr4 19804545 19804920 -164483742 + MLT1A1 LTR MaLR 1 365 0 222 319 42 42 chr4 19805040 19805159 -164483503 - L2 LINE L2 -177 3095 2977 207 357 32 16 chr4 19805347 19805473 -164483189 - MIR SINE MIR -76 186 59 357 141 0 0 chr4 19805669 19805740 -164482922 + (GAATG)n Simple_repeat Simple_repeat 2 72 0 1036 196 50 122 chr4 19805801 19806204 -164482458 + MLT1A2 LTR MaLR 1 374 0 339 321 30 8 chr4 19808533 19808664 -164479998 + MIR SINE MIR 117 250 -12 201 175 0 0 chr4 19808798 19808838 -164479824 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 2429 91 0 0 chr4 19809170 19809479 -164479183 - AluSq SINE Alu -4 309 1 251 159 29 43 chr4 19809934 19810003 -164478659 + MLT1F1 LTR MaLR 52 119 -448 980 211 143 65 chr4 19810018 19810431 -164478231 + L1MD3 LINE L1 7384 7828 -167 193 346 105 15 chr4 19811038 19811171 -164477491 + MIR3 SINE MIR 41 185 -23 975 182 0 0 chr4 19811700 19811865 -164476797 - FRAM SINE Alu -12 164 1 406 306 77 21 chr4 19811879 19812349 -164476313 + L1ME4a LINE L1 5603 6098 -23 241 278 0 0 chr4 19812833 19812887 -164475775 + GA-rich Low_complexity Low_complexity 1 54 0 204 234 2 0 chr4 19813471 19813525 -164475137 + GA-rich Low_complexity Low_complexity 3 40 0 1811 153 43 0 chr4 19813776 19814058 -164474604 + AluSx SINE Alu 1 294 -18 1221 92 0 0 chr4 19814058 19814231 -164474431 + (TA)n Simple_repeat Simple_repeat 2 174 0 219 336 25 25 chr4 19815602 19815721 -164472941 - L3 LINE CR1 -126 1451 1333 197 259 62 49 chr4 19815742 19815823 -164472839 - L2 LINE L2 -4 3268 3187 220 306 63 27 chr4 19816363 19816474 -164472188 + L2 LINE L2 3191 3305 -8 453 125 25 0 chr4 19816500 19816615 -164472047 - AluSc SINE Alu 0 342 226 194 62 31 0 chr4 19816750 19816782 -164471880 + (CATTC)n Simple_repeat Simple_repeat 5 37 0 188 381 25 8 chr4 19816972 19817090 -164471572 + MIR SINE MIR 59 178 -84 357 242 24 32 chr4 19817302 19817426 -164471236 + MIR SINE MIR 92 214 -48 237 183 0 33 chr4 19819527 19819587 -164469075 + (TCTA)n Simple_repeat Simple_repeat 2 59 0 287 305 92 67 chr4 19819958 19820122 -164468540 + MIR3 SINE MIR 37 204 -4 252 341 44 22 chr4 19821575 19821710 -164466952 - MIR SINE MIR -73 189 52 29 60 0 0 chr4 19821867 19821917 -164466745 + AT_rich Low_complexity Low_complexity 1 50 0 407 125 31 10 chr4 19821998 19822094 -164466568 + (TA)n Simple_repeat Simple_repeat 2 99 0 2909 167 11 9 chr4 19822098 19822648 -164466014 - MER89 LTR ERV1 -7 552 2 273 119 0 0 chr4 19822676 19822718 -164465944 + (TG)n Simple_repeat Simple_repeat 1 42 0 186 174 275 14 chr4 19823447 19823516 -164465146 - L2 LINE L2 -1 3271 3185 628 342 53 38 chr4 19823874 19824380 -164464282 - L2 LINE L2 0 3313 2802 1776 197 52 13 chr4 19824392 19824773 -164463889 + MSTD LTR MaLR 1 396 0 399 210 12 0 chr4 19824886 19824967 -164463695 - Tigger5 DNA MER2_type 0 2323 2242 367 218 13 0 chr4 19824957 19825035 -164463627 + Tigger5 DNA MER2_type 2242 2320 -3 * 473 182 0 0 chr4 19825036 19825113 -164463549 - Tigger5 DNA MER2_type -2246 77 1 222 294 29 0 chr4 19825113 19825181 -164463481 + L2 LINE L2 2885 2954 -359 482 238 88 38 chr4 19825611 19825771 -164462891 + MIR SINE MIR 49 216 -46 362 309 0 65 chr4 19825826 19825965 -164462697 - MIR3 SINE MIR -76 132 3 21 0 0 0 chr4 19825981 19826002 -164462660 + AT_rich Low_complexity Low_complexity 1 21 0 578 313 52 17 chr4 19826890 19827120 -164461542 - L3 LINE CR1 -9 1568 1331 1323 193 21 89 chr4 19827434 19827860 -164460802 - MLT2C1 LTR ERVL 0 397 1 402 278 0 0 chr4 19828032 19828129 -164460533 + MIR SINE MIR 96 192 -70 251 263 40 0 chr4 19828193 19828269 -164460393 - MIR SINE MIR 0 262 184 432 108 0 54 chr4 19828278 19828352 -164460310 - MSTD LTR MaLR -323 73 4 361 303 72 0 chr4 19829179 19829331 -164459331 + MER103 DNA DNA 4 166 0 21 0 0 0 chr4 19829665 19829686 -164458976 + AT_rich Low_complexity Low_complexity 1 21 0 250 400 36 0 chr4 19829686 19829796 -164458866 + L2 LINE L2 3139 3252 -20 9558 136 34 5 chr4 19829913 19831423 -164457239 - L1M1 LINE L1 -4868 2697 1144 1678 257 145 14 chr4 19831524 19832088 -164456574 - MLT1E1 LTR MaLR -15 639 2 2167 108 3 3 chr4 19832145 19832433 -164456229 - AluSx SINE Alu -24 288 1 1192 127 0 0 chr4 19833071 19833237 -164455425 + AluSg SINE Alu 1 166 -144 8200 228 60 35 chr4 19833343 19834588 -164454074 - L1MD1 LINE L1 -322 5920 4707 2143 64 10 54 chr4 19834588 19834904 -164453758 - AluY SINE Alu 0 303 1 8200 228 60 35 chr4 19834904 19835702 -164452960 - L1MD1 LINE L1 -1535 4707 3930 2327 85 0 13 chr4 19835702 19836008 -164452654 - AluY SINE Alu -9 302 1 8200 228 60 35 chr4 19836008 19836440 -164452222 - L1MD1 LINE L1 -2312 3930 3510 1248 216 122 61 chr4 19836440 19836866 -164451796 - MSTB2 LTR MaLR -2 455 4 8200 228 60 35 chr4 19836866 19837726 -164450936 - L1MD1 LINE L1 -2732 3510 2512 1608 124 0 4 chr4 19837806 19838031 -164450631 - AluSc SINE Alu -85 224 1 279 308 77 21 chr4 19838300 19838443 -164450219 + L2 LINE L2 3163 3313 0 426 214 95 8 chr4 19838625 19838751 -164449911 + L1ME2 LINE L1 6007 6143 -21 198 305 63 68 chr4 19839420 19839440 -164449222 - L2 LINE L2 0 3313 3294 3458 43 2 80 chr4 19839440 19839926 -164448736 - LTR7 LTR ERV1 -2 448 1 198 305 63 68 chr4 19839926 19840095 -164448567 - L2 LINE L2 -19 3294 3125 277 297 69 63 chr4 19840217 19840392 -164448270 - MIR SINE MIR -40 222 47 211 286 0 36 chr4 19841869 19841925 -164446737 + L2 LINE L2 3213 3266 -6 21 0 0 0 chr4 19843405 19843426 -164445236 + AT_rich Low_complexity Low_complexity 1 21 0 1900 150 33 0 chr4 19843485 19843785 -164444877 + MER21A LTR ERV1 621 930 -1 2519 88 0 0 chr4 19843789 19844097 -164444565 - AluSx SINE Alu -4 308 1 421 193 105 0 chr4 19844105 19844219 -164444443 + L1MA4 LINE L1 6175 6300 0 1407 215 76 69 chr4 19844232 19844693 -164443969 - L1ME2 LINE L1 -42 6122 5659 193 317 77 29 chr4 19844724 19844828 -164443834 - MIR SINE MIR -128 134 26 243 293 60 43 chr4 19844936 19845052 -164443610 - L2 LINE L2 -1 3271 3154 221 231 115 0 chr4 19845398 19845450 -164443212 - MIR SINE MIR -108 154 97 221 336 56 16 chr4 19845573 19845698 -164442964 - L2 LINE L2 -501 2813 2684 303 232 0 37 chr4 19845728 19845810 -164442852 - MER96 DNA MER1_type? -6 169 91 369 263 105 7 chr4 19846207 19846359 -164442303 + MIR3 SINE MIR 20 186 -22 2464 70 0 3 chr4 19847252 19847553 -164441109 - AluY SINE Alu -11 300 1 442 270 101 28 chr4 19847595 19847773 -164440889 - MIR SINE MIR -6 256 66 217 289 127 84 chr4 19847888 19848054 -164440608 - MIR3 SINE MIR -23 185 13 361 282 208 4 chr4 19848284 19848525 -164440137 - L2 LINE L2 -117 3196 2907 376 191 11 53 chr4 19848533 19848627 -164440035 + L2 LINE L2 3222 3311 -2 905 245 5 0 chr4 19848804 19848996 -164439666 - MER58A DNA MER1_type -31 193 1 189 313 76 30 chr4 19849187 19849318 -164439344 - L2 LINE L2 -1032 2282 2146 189 318 23 34 chr4 19849692 19849780 -164438882 + L2 LINE L2 3001 3087 -185 1777 155 22 40 chr4 19850245 19850567 -164438095 - MLT1B LTR MaLR -74 316 1 4849 134 45 5 chr4 19850577 19851345 -164437317 - Tigger1 DNA MER2_type -2 2416 1618 1911 142 153 26 chr4 19851345 19851519 -164437143 + MSTA LTR MaLR 1 152 -276 3464 151 21 96 chr4 19851519 19852004 -164436658 + LTR8 LTR ERV1 1 412 -279 2269 121 0 3 chr4 19852004 19852309 -164436353 + AluSx SINE Alu 1 304 -8 3464 151 21 96 chr4 19852309 19852570 -164436092 + LTR8 LTR ERV1 412 691 0 1911 142 153 26 chr4 19852570 19852775 -164435887 + MSTA LTR MaLR 152 428 0 * 10997 128 12 3 chr4 19852775 19854379 -164434283 - Tigger1 DNA MER2_type -799 1619 1 186 229 0 42 chr4 19854388 19854436 -164434226 - L2 LINE L2 -42 3271 3226 332 43 0 21 chr4 19854678 19854725 -164433937 + (TG)n Simple_repeat Simple_repeat 1 46 0 304 173 0 0 chr4 19854749 19854801 -164433861 + L2 LINE L2 3262 3313 0 417 324 72 5 chr4 19855177 19855399 -164433263 - MIR SINE MIR -13 249 13 21 36 0 0 chr4 19856385 19856413 -164432249 + AT_rich Low_complexity Low_complexity 1 28 0 269 333 31 0 chr4 19856605 19856701 -164431961 - MER46C DNA MER2_type 0 338 240 364 245 49 10 chr4 19856771 19856873 -164431789 - MER46C DNA MER2_type -232 106 1 258 32 0 0 chr4 19856937 19856968 -164431694 + (A)n Simple_repeat Simple_repeat 1 31 0 370 209 9 9 chr4 19857308 19857423 -164431239 + (TA)n Simple_repeat Simple_repeat 2 116 0 214 282 70 14 chr4 19857813 19857884 -164430778 - MIR3 SINE MIR -14 194 120 488 284 22 0 chr4 19857954 19858088 -164430574 + MIR SINE MIR 91 227 -35 226 288 0 0 chr4 19858122 19858181 -164430481 - MIR SINE MIR -130 78 20 2487 188 29 0 chr4 19858297 19858711 -164429951 + MSTB LTR MaLR 1 426 0 523 172 21 0 chr4 19858867 19858960 -164429702 + MSTB1 LTR MaLR 3 97 -335 3213 219 17 3 chr4 19858964 19859625 -164429037 + MSTB-int LTR MaLR 1 670 -981 1251 154 12 77 chr4 19859622 19859881 -164428781 + MSTB-int LTR MaLR 1403 1644 -7 * 2190 157 58 62 chr4 19859888 19860322 -164428340 + MSTB1 LTR MaLR 1 432 0 21 0 0 0 chr4 19860889 19860910 -164427752 + AT_rich Low_complexity Low_complexity 1 21 0 204 40 0 0 chr4 19861225 19861250 -164427412 + (T)n Simple_repeat Simple_repeat 1 25 0 183 139 0 28 chr4 19862335 19862371 -164426291 + L2 LINE L2 3266 3300 -13 2605 153 10 56 chr4 19863251 19863754 -164424908 - MLT1D LTR MaLR 0 505 26 2195 90 14 0 chr4 19864224 19864513 -164424149 + L1PA10 LINE L1 5628 5920 -248 1836 119 0 0 chr4 19864532 19864802 -164423860 - AluSx SINE Alu 0 311 42 495 171 0 0 chr4 19864802 19864872 -164423790 - AluS SINE Alu -240 71 2 2433 83 0 0 chr4 19864900 19865201 -164423461 + AluY SINE Alu 2 302 -9 2548 153 22 0 chr4 19865232 19865638 -164423024 + MLT1C LTR MaLR 1 415 -52 43834 30 21 1 chr4 19865638 19871664 -164416998 - L1HS LINE L1 -3 6152 3 404 134 104 0 chr4 19871811 19871878 -164416784 + MLT1C LTR MaLR 394 467 0 523 315 79 47 chr4 19872752 19873006 -164415656 + MIR SINE MIR 1 262 0 27 87 0 0 chr4 19873149 19873218 -164415444 + AT_rich Low_complexity Low_complexity 1 69 0 27 62 0 0 chr4 19873260 19873308 -164415354 + AT_rich Low_complexity Low_complexity 1 48 0 196 256 0 0 chr4 19873314 19873357 -164415305 - L2 LINE L2 -4 3309 3267 225 322 25 58 chr4 19873524 19873645 -164415017 + L2 LINE L2 3151 3267 -5 253 330 55 0 chr4 19873666 19873757 -164414905 + MIR3 SINE MIR 67 162 -46 365 286 71 52 chr4 19874273 19874581 -164414081 - L1ME4a LINE L1 -19 6102 5789 295 208 83 0 chr4 19875016 19875088 -164413574 - L1ME4a LINE L1 -329 5792 5715 1729 130 10 31 chr4 19876429 19876722 -164411940 - AluJb SINE Alu -3 309 23 270 381 24 0 chr4 19877041 19877167 -164411495 - MIR SINE MIR -100 162 34 1974 144 0 0 chr4 19877368 19877681 -164410981 + AluSx SINE Alu 1 313 0 704 168 0 9 chr4 19877701 19877814 -164410848 - FLAM_A SINE Alu -23 119 8 203 313 53 61 chr4 19877832 19877963 -164410699 + MIR3 SINE MIR 48 177 -31 241 288 34 0 chr4 19878126 19878185 -164410477 + L2 LINE L2 3249 3309 -4 477 253 13 53 chr4 19878406 19878556 -164410106 - MER103 DNA DNA -1 165 22 276 231 38 42 chr4 19879159 19879290 -164409372 + MIR SINE MIR 24 204 -58 1436 111 106 0 chr4 19879355 19879563 -164409099 + MER30 DNA MER1_type 1 230 0 2276 101 7 7 chr4 19879605 19879913 -164408749 - AluSc SINE Alu -1 308 1 1276 193 159 52 chr4 19880369 19880789 -164407873 + MLT1C LTR MaLR 3 467 0 196 350 31 10 chr4 19880850 19880947 -164407715 + L2 LINE L2 2634 2732 -582 2406 91 0 0 chr4 19881028 19881337 -164407325 - AluY SINE Alu -2 309 1 196 333 42 52 chr4 19881395 19881491 -164407171 + L2 LINE L2 3138 3232 -40 567 273 19 7 chr4 19881650 19881804 -164406858 - MIR SINE MIR -78 184 29 369 321 57 25 chr4 19882008 19882167 -164406495 - L2 LINE L2 -1 3271 3108 281 243 14 14 chr4 19882643 19882717 -164405945 - MER116 DNA Mariner -4 76 3 655 244 96 48 chr4 19882807 19883078 -164405584 - LTR16C LTR ERVL -32 459 176 247 261 148 35 chr4 19883200 19883315 -164405347 + MIR SINE MIR 60 187 -75 2153 224 21 25 chr4 19883947 19884473 -164404189 - L1ME2 LINE L1 -7 6157 5634 612 247 7 7 chr4 19884456 19884606 -164404056 + L1ME LINE L1 5326 5475 -687 * 303 208 83 31 chr4 19884659 19884755 -164403907 - L1MC5 LINE L1 -29 7932 7832 1005 240 66 60 chr4 19884781 19885147 -164403515 - MER21B LTR ERV1 -88 775 408 911 229 21 30 chr4 19885176 19885412 -164403250 - MER21B LTR ERV1 -528 335 102 391 137 11 126 chr4 19885454 19885549 -164403113 - MER21B LTR ERV1 -767 96 13 773 236 14 0 chr4 19885643 19885791 -164402871 - FRAM SINE Alu -26 150 1 341 264 189 67 chr4 19885846 19886167 -164402495 - L1MC5 LINE L1 -253 7708 7327 1709 90 5 0 chr4 19886167 19886389 -164402273 - L1PA13 LINE L1 -6 6157 5935 341 264 189 67 chr4 19886389 19886469 -164402193 - L1MC5 LINE L1 -634 7327 7258 463 137 0 0 chr4 19887400 19887473 -164401189 + MER41A LTR ERV1 399 471 -83 718 154 24 12 chr4 19887473 19887642 -164401020 + GA-rich Low_complexity Low_complexity 4 174 0 230 308 111 17 chr4 19887765 19887882 -164400780 + MER5B DNA MER1_type 51 178 0 268 258 152 67 chr4 19888804 19888982 -164399680 + L2 LINE L2 3117 3309 -4 473 148 89 10 chr4 19889416 19889517 -164399145 - MER34B LTR ERV1 0 565 457 1769 204 68 52 chr4 19889836 19890351 -164398311 - MER39 LTR ERV1 -4 703 1 190 283 19 0 chr4 19890595 19890648 -164398014 - MIR SINE MIR -189 73 20 1031 212 66 78 chr4 19890893 19891394 -164397268 - L1MC5 LINE L1 -30 7931 7437 325 328 70 67 chr4 19891435 19891776 -164396886 - L1MC4a LINE L1 -1344 6464 6123 822 279 48 24 chr4 19891801 19892138 -164396524 - L1MC4a LINE L1 -1776 6032 5688 357 82 0 0 chr4 19892150 19892199 -164396463 + (TCCC)n Simple_repeat Simple_repeat 4 52 0 234 91 0 0 chr4 19892241 19892274 -164396388 + (TCCC)n Simple_repeat Simple_repeat 4 36 0 472 268 43 112 chr4 19892289 19892565 -164396097 - L1MC4a LINE L1 -2152 5656 5400 304 281 10 10 chr4 19892573 19892669 -164395993 - L1MC4a LINE L1 -2238 3908 3813 2520 70 0 10 chr4 19892713 19893026 -164395636 - AluY SINE Alu -1 310 1 311 287 75 23 chr4 19893071 19893245 -164395417 - L1MC4a LINE L1 -2364 3782 3600 2320 96 7 0 chr4 19893379 19893682 -164394980 + AluY SINE Alu 2 306 -5 396 252 32 96 chr4 19894021 19894271 -164394391 - MIR SINE MIR -20 242 9 228 232 0 0 chr4 19894439 19894495 -164394167 + L1MC4 LINE L1 6648 6703 -1339 225 0 0 0 chr4 19894507 19894532 -164394130 + (CA)n Simple_repeat Simple_repeat 2 26 0 2044 97 7 39 chr4 19894760 19895070 -164393592 + AluSg SINE Alu 3 302 -8 240 196 20 0 chr4 19895132 19895183 -164393479 + L2 LINE L2 3261 3312 -1 2318 83 144 35 chr4 19895291 19895688 -164392974 - LTR7 LTR ERV1 -10 440 1 239 316 9 18 chr4 19895858 19895972 -164392690 + L1ME4a LINE L1 5319 5431 -690 470 297 134 10 chr4 19895997 19896287 -164392375 - L1MC/D LINE L1 -2198 5610 5285 2300 52 39 30 chr4 19896526 19896831 -164391831 + AluY SINE Alu 1 308 -3 1457 122 14 0 chr4 19896858 19897071 -164391591 - AluSp SINE Alu -5 308 93 445 310 125 27 chr4 19897109 19897443 -164391219 - L2 LINE L2 -229 3084 2726 682 128 0 28 chr4 19898650 19898759 -164389903 - L1MD3 LINE L1 -28 7967 7862 1055 176 26 0 chr4 19898773 19898966 -164389696 - MLT2B1 LTR ERVL -322 198 1 16814 167 21 6 chr4 19898966 19901775 -164386887 - ERVL-B1 LTR ERVL -7 5757 2907 4829 201 26 21 chr4 19901779 19902298 -164386364 - ERVL-B1 LTR ERVL -3977 1787 1258 2358 63 0 7 chr4 19902298 19902627 -164386035 - AluY SINE Alu 0 327 1 4829 201 26 21 chr4 19902627 19903110 -164385552 - ERVL-B1 LTR ERVL -4506 1258 779 716 142 8 37 chr4 19903118 19903252 -164385410 - MLT2B1 LTR ERVL -389 131 2 2002 100 76 3 chr4 19903602 19903891 -164384771 + AluSx SINE Alu 1 310 -2 450 309 90 17 chr4 19904242 19904543 -164384119 + L1ME4a LINE L1 5531 5853 -268 267 31 0 0 chr4 19905336 19905368 -164383294 + (GA)n Simple_repeat Simple_repeat 1 32 0 1999 201 57 5 chr4 19905713 19906135 -164382527 - MLT1C LTR MaLR -2 465 22 914 299 129 27 chr4 19906192 19906634 -164382028 + MLT1K LTR MaLR 101 587 -1 747 295 44 1 chr4 19906746 19906978 -164381684 + MIR SINE MIR 22 260 -2 304 314 36 20 chr4 19906995 19907162 -164381500 - MIR SINE MIR -65 143 20 474 285 121 91 chr4 19907460 19907933 -164380729 - L2 LINE L2 0 3313 2827 2359 106 0 0 chr4 19908145 19908457 -164380205 + AluSx SINE Alu 1 312 0 330 362 29 7 chr4 19909031 19909169 -164379493 + L2 LINE L2 2941 3081 -191 800 244 77 24 chr4 19909364 19909610 -164379052 - MIR SINE MIR 0 262 4 355 230 0 14 chr4 19909667 19909741 -164378921 + L2 LINE L2 3240 3312 -1 569 276 68 22 chr4 19909875 19910088 -164378574 - MIR SINE MIR -2 260 42 2316 97 13 3 chr4 19910207 19910515 -164378147 + AluSq SINE Alu 1 311 -2 357 226 26 35 chr4 19910761 19910876 -164377786 - Charlie8 DNA MER1_type -2228 189 76 661 299 47 8 chr4 19911624 19911858 -164376804 + MIR SINE MIR 8 250 -12 2248 100 0 3 chr4 19911951 19912241 -164376421 - AluSg SINE Alu -15 295 7 1072 142 0 0 chr4 19912421 19912602 -164376060 - AluSg/x SINE Alu 0 309 129 2379 88 13 0 chr4 19912603 19912909 -164375753 - AluSg SINE Alu 0 310 1 574 293 81 22 chr4 19912923 19913145 -164375517 - MIR SINE MIR -18 244 10 180 200 0 0 chr4 19913320 19913360 -164375302 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 189 74 0 0 chr4 19913362 19913389 -164375273 + (TG)n Simple_repeat Simple_repeat 1 27 0 207 0 0 0 chr4 19914891 19914914 -164373748 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 243 0 0 0 chr4 19915512 19915539 -164373123 + (TC)n Simple_repeat Simple_repeat 1 27 0 813 144 6 17 chr4 19915539 19915720 -164372942 + CT-rich Low_complexity Low_complexity 2 180 0 180 0 0 0 chr4 19915784 19915804 -164372858 + (CCTG)n Simple_repeat Simple_repeat 2 21 0 324 70 0 0 chr4 19916412 19916455 -164372207 + (TA)n Simple_repeat Simple_repeat 2 44 0 211 196 0 22 chr4 19918702 19918748 -164369914 + CT-rich Low_complexity Low_complexity 2 46 0 186 43 0 0 chr4 19919210 19919233 -164369429 + (T)n Simple_repeat Simple_repeat 1 23 0 197 241 17 69 chr4 19919499 19919557 -164369105 + L2 LINE L2 3249 3303 -10 21 0 0 0 chr4 19921934 19921955 -164366707 + AT_rich Low_complexity Low_complexity 1 21 0 198 383 70 31 chr4 19922039 19922167 -164366495 - L2 LINE L2 -43 3229 3097 371 312 5 48 chr4 19922242 19922428 -164366234 - MIR SINE MIR -10 252 75 2347 105 0 0 chr4 19922750 19923055 -164365607 + AluSg SINE Alu 4 308 -2 27 29 0 0 chr4 19923128 19923162 -164365500 + AT_rich Low_complexity Low_complexity 1 34 0 497 353 107 0 chr4 19923943 19924269 -164364393 + L2 LINE L2 2586 2946 -368 433 278 150 38 chr4 19924445 19924711 -164363951 + L2 LINE L2 3017 3312 -1 273 98 0 0 chr4 19925234 19925275 -164363387 + (TG)n Simple_repeat Simple_repeat 1 41 0 180 0 0 0 chr4 19925274 19925294 -164363368 + (GA)n Simple_repeat Simple_repeat 1 20 0 * 318 322 29 1 chr4 19925434 19925537 -164363125 + MIR SINE MIR 31 132 -76 22 0 0 0 chr4 19926571 19926593 -164362069 + AT_rich Low_complexity Low_complexity 1 22 0 304 265 71 10 chr4 19926968 19927066 -164361596 - MIR3 SINE MIR -8 200 97 201 121 0 0 chr4 19927103 19927136 -164361526 + (T)n Simple_repeat Simple_repeat 1 33 0 2621 52 0 3 chr4 19927296 19927604 -164361058 - AluY SINE Alu -4 307 1 256 206 109 11 chr4 19927931 19928023 -164360639 - L1ME LINE L1 -224 5897 5797 1474 173 33 43 chr4 19928109 19928409 -164360253 - AluJb SINE Alu -3 309 13 1222 173 26 68 chr4 19929006 19929272 -164359390 - AluJb SINE Alu -11 301 47 466 301 96 13 chr4 19929373 19929602 -164359060 + MIR SINE MIR 6 253 -9 198 293 24 49 chr4 19929731 19929813 -164358849 - L2 LINE L2 -258 3014 2935 666 253 13 7 chr4 19930008 19930162 -164358500 + MIR SINE MIR 100 254 -8 189 74 0 0 chr4 19930194 19930221 -164358441 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 270 360 0 0 chr4 19932143 19932229 -164356433 - L2 LINE L2 -85 3187 3102 200 283 0 0 chr4 19932288 19932334 -164356328 + (CA)n Simple_repeat Simple_repeat 2 47 0 464 330 58 9 chr4 19932922 19933167 -164355495 - MIR SINE MIR -10 252 3 241 150 0 0 chr4 19933180 19933220 -164355442 - MIR SINE MIR -118 144 105 1968 79 12 0 chr4 19933433 19933687 -164354975 - AluY SINE Alu -11 300 44 417 281 131 6 chr4 19933917 19934077 -164354585 - MER91A DNA MER1_type -13 183 4 2127 196 69 42 chr4 19934555 19935061 -164353601 - MLT2B1 LTR ERVL 0 520 1 192 413 22 11 chr4 19935227 19935319 -164353343 - L2 LINE L2 -38 3234 3142 378 285 82 86 chr4 19935448 19935974 -164352688 - L2 LINE L2 -191 3081 2548 232 204 0 0 chr4 19936578 19936622 -164352040 + L2 LINE L2 3262 3305 -8 265 293 73 0 chr4 19936882 19936964 -164351698 + MIR SINE MIR 63 150 -112 933 198 0 6 chr4 19937282 19937449 -164351213 + FRAM SINE Alu 1 164 -12 21 36 0 0 chr4 19938834 19938862 -164349800 + AT_rich Low_complexity Low_complexity 1 28 0 227 270 40 0 chr4 19938917 19938991 -164349671 - MER5A DNA MER1_type -59 130 54 22 56 0 0 chr4 19939003 19939039 -164349623 + AT_rich Low_complexity Low_complexity 1 36 0 1350 223 72 24 chr4 19939388 19939886 -164348776 - HsTC2 DNA Tc2 -103 1795 1274 34 24 0 0 chr4 19940075 19940116 -164348546 + AT_rich Low_complexity Low_complexity 1 41 0 810 196 60 10 chr4 19940256 19940455 -164348207 + L1MB7 LINE L1 5708 5916 -268 22 35 0 0 chr4 19940694 19940723 -164347939 + AT_rich Low_complexity Low_complexity 1 29 0 475 305 63 93 chr4 19940953 19941255 -164347407 - L3 LINE CR1 -111 1466 1174 301 282 49 55 chr4 19941761 19941924 -164346738 - L2 LINE L2 -21 3292 3131 259 245 0 0 chr4 19941924 19942004 -164346658 - MER63 DNA MER1_type -523 537 459 219 42 0 83 chr4 19942013 19942061 -164346601 + (TAAAAA)n Simple_repeat Simple_repeat 2 45 0 3172 193 51 24 chr4 19942181 19942434 -164346228 + MER63C DNA MER1_type 13 258 -802 2339 88 0 7 chr4 19942434 19942739 -164345923 + AluSx SINE Alu 1 303 -9 3172 193 51 24 chr4 19942739 19943269 -164345393 + MER63C DNA MER1_type 258 817 -113 2189 89 3 3 chr4 19943423 19943729 -164344933 + AluSq SINE Alu 1 306 0 450 290 15 8 chr4 19943925 19944056 -164344606 + MIR3 SINE MIR 70 201 -7 296 368 82 16 chr4 19944686 19944868 -164343794 + MIR SINE MIR 6 199 -63 588 228 24 130 chr4 19945073 19945319 -164343343 + MIR SINE MIR 21 240 -22 203 100 0 25 chr4 19945322 19945362 -164343300 + (CAT)n Simple_repeat Simple_repeat 3 41 0 519 228 0 0 chr4 19945378 19945558 -164343104 + (CAT)n Simple_repeat Simple_repeat 1 180 0 241 222 19 0 chr4 19946378 19946432 -164342230 + MER117 DNA MER1_type 1 55 -142 213 141 51 154 chr4 19946604 19946682 -164341980 + L2 LINE L2 2548 2617 -697 866 257 69 32 chr4 19947086 19947520 -164341142 - MLT1G1 LTR MaLR -83 512 1 313 313 68 45 chr4 19947733 19947909 -164340753 + MIR3 SINE MIR 20 199 -9 422 272 146 28 chr4 19948310 19948564 -164340098 - L2 LINE L2 -173 3140 2857 1859 139 0 26 chr4 19949086 19949395 -164339267 - AluSx SINE Alu -11 301 1 2283 96 3 3 chr4 19949413 19949714 -164338948 - AluSq SINE Alu -12 301 1 375 246 158 52 chr4 19950249 19950398 -164338264 - MLT1J2 LTR MaLR -80 366 234 2548 65 0 0 chr4 19950398 19950705 -164337957 + AluY SINE Alu 2 308 -3 375 246 158 52 chr4 19950705 19950827 -164337835 - MLT1J2 LTR MaLR -212 234 66 321 235 86 80 chr4 19950876 19951038 -164337624 + MER5A DNA MER1_type 2 164 -25 2416 106 3 0 chr4 19951693 19952005 -164336657 - AluSp SINE Alu 0 313 1 22 35 0 0 chr4 19952092 19952121 -164336541 + AT_rich Low_complexity Low_complexity 1 29 0 301 290 60 0 chr4 19952297 19952397 -164336265 - MIR SINE MIR -71 191 86 222 234 65 0 chr4 19952515 19952592 -164336070 - L2 LINE L2 -292 2980 2899 858 211 16 5 chr4 19952891 19953081 -164335581 + MER20 DNA MER1_type 28 219 0 277 297 54 54 chr4 19953685 19953833 -164334829 - MIR3 SINE MIR -3 205 58 219 88 0 0 chr4 19953973 19954007 -164334655 + (TG)n Simple_repeat Simple_repeat 1 34 0 415 252 36 36 chr4 19954374 19954513 -164334149 + MIR SINE MIR 123 261 -1 194 304 101 0 chr4 19954515 19954584 -164334078 + L2 LINE L2 3222 3297 -16 380 278 176 0 chr4 19955145 19955332 -164333330 + MIR SINE MIR 32 251 -11 587 216 22 8 chr4 19956122 19956256 -164332406 + MIR SINE MIR 79 214 -48 245 196 89 0 chr4 19956319 19956375 -164332287 - MIR SINE MIR -88 174 114 * 930 288 66 19 chr4 19956372 19957056 -164331606 - L2 LINE L2 -2 3311 2548 659 270 58 0 chr4 19957491 19957665 -164330997 + MIR SINE MIR 68 251 -11 585 238 54 36 chr4 19957731 19957899 -164330763 + MER58B DNA MER1_type 171 341 0 353 264 52 39 chr4 19957925 19958080 -164330582 - L1ME LINE L1 -600 5566 5410 235 179 60 15 chr4 19958091 19958158 -164330504 - Charlie1 DNA MER1_type -9 2752 2683 3724 195 95 18 chr4 19958159 19959243 -164329419 - Charlie1 DNA MER1_type -254 2507 39 263 189 153 9 chr4 19959273 19959384 -164329278 - L1ME LINE L1 -2382 5403 5277 21 0 0 0 chr4 19959385 19959406 -164329256 + AT_rich Low_complexity Low_complexity 1 21 0 228 128 77 0 chr4 19959614 19959692 -164328970 + (TA)n Simple_repeat Simple_repeat 1 84 0 297 0 0 0 chr4 19959819 19959852 -164328810 + (TG)n Simple_repeat Simple_repeat 2 34 0 21 82 0 0 chr4 19960021 19960070 -164328592 + AT_rich Low_complexity Low_complexity 1 49 0 4073 215 14 24 chr4 19960079 19961182 -164327480 - L1MA9 LINE L1 -38 6274 5184 25 31 0 0 chr4 19961185 19961217 -164327445 + AT_rich Low_complexity Low_complexity 1 32 0 547 279 117 6 chr4 19962132 19962311 -164326351 - MIR SINE MIR -7 255 57 1366 130 0 5 chr4 19962734 19962934 -164325728 - AluSg/x SINE Alu -2 308 110 495 283 53 16 chr4 19963086 19963273 -164325389 - MER63A DNA MER1_type -16 194 1 424 326 76 43 chr4 19963311 19963379 -164325283 + L2 LINE L2 2138 2202 -1112 270 0 0 0 chr4 19963379 19963409 -164325253 + (CA)n Simple_repeat Simple_repeat 2 31 0 424 326 76 43 chr4 19963409 19963641 -164325021 + L2 LINE L2 2202 2448 -866 454 343 49 25 chr4 19963888 19964092 -164324570 - MIR SINE MIR -27 235 27 501 326 136 41 chr4 19964881 19965716 -164322946 - L2 LINE L2 -3 3310 2362 433 298 55 37 chr4 19965743 19965961 -164322701 - L3 LINE CR1 -108 1469 1248 21 0 0 0 chr4 19966330 19966351 -164322311 + AT_rich Low_complexity Low_complexity 1 21 0 2287 67 3 0 chr4 19966441 19966761 -164321901 + AluY SINE Alu 1 321 0 311 361 68 35 chr4 19966822 19967188 -164321474 - L1ME LINE L1 -366 5755 5378 2199 89 0 20 chr4 19968226 19968529 -164320133 - AluSx SINE Alu -13 299 3 291 325 89 41 chr4 19968530 19968699 -164319963 + MIR SINE MIR 73 249 -13 205 189 0 0 chr4 19968840 19968877 -164319785 - MIR SINE MIR -4 258 222 1513 181 40 23 chr4 19970082 19970386 -164318276 - AluJo SINE Alu -3 309 1 2206 109 17 3 chr4 19970440 19970742 -164317920 + AluSx SINE Alu 2 307 -5 228 67 0 0 chr4 19970911 19970941 -164317721 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 220 342 13 0 chr4 19970954 19971030 -164317632 - L2 LINE L2 -40 3273 3197 291 209 75 0 chr4 19971418 19971485 -164317177 - MIR SINE MIR -25 237 166 242 313 16 0 chr4 19971515 19971579 -164317083 - MIR SINE MIR -189 73 9 225 256 77 26 chr4 19972516 19972594 -164316068 + L3 LINE CR1 1491 1572 -5 334 317 24 32 chr4 19973653 19973776 -164314886 - MIR SINE MIR -140 122 1 327 286 108 35 chr4 19974126 19974329 -164314333 + MIR SINE MIR 29 246 -16 180 111 0 0 chr4 19974427 19974454 -164314208 + (TG)n Simple_repeat Simple_repeat 2 28 0 222 288 144 0 chr4 19974503 19974614 -164314048 + MIR SINE MIR 121 247 -15 287 234 25 29 chr4 19974645 19974800 -164313862 + MIR SINE MIR 34 150 -112 2058 157 98 0 chr4 19974815 19975204 -164313458 + MSTB1 LTR MaLR 1 427 -5 248 304 57 44 chr4 19976502 19976729 -164311933 - MLT1H1 LTR MaLR -15 540 311 274 238 16 0 chr4 19976888 19976951 -164311711 - MLT1F LTR MaLR -459 83 20 242 377 150 0 chr4 19976997 19977164 -164311498 - MIR SINE MIR -13 249 58 300 303 197 19 chr4 19977462 19977670 -164310992 + MIR SINE MIR 10 254 -8 440 240 16 24 chr4 19978318 19978443 -164310219 - MER63 DNA MER1_type -85 751 2 1817 246 81 19 chr4 19978550 19979220 -164309442 + L1ME2 LINE L1 5447 6157 -7 350 294 55 0 chr4 19979297 19979406 -164309256 + MIR SINE MIR 37 151 -111 263 278 14 42 chr4 19979433 19979505 -164309157 - L2 LINE L2 -35 3237 3168 2240 99 0 0 chr4 19979517 19979810 -164308852 - AluSg SINE Alu -17 293 1 446 256 31 8 chr4 19979886 19980015 -164308647 - Charlie8 DNA MER1_type -2160 257 126 841 301 142 18 chr4 19980103 19980516 -164308146 - L2 LINE L2 0 3313 2838 2335 99 0 0 chr4 19980516 19980820 -164307842 + AluSc SINE Alu 1 304 -5 841 301 142 18 chr4 19980820 19980858 -164307804 - L2 LINE L2 -475 2838 2806 626 302 14 42 chr4 19982011 19982223 -164306439 + MIR SINE MIR 57 262 0 988 297 123 16 chr4 19982238 19982662 -164306000 - MLT1J LTR MaLR -4 507 39 867 288 115 39 chr4 19982775 19983157 -164305505 + L2 LINE L2 2535 2945 -369 317 243 75 26 chr4 19983180 19983296 -164305366 - MIR SINE MIR -87 121 3 2105 153 46 22 chr4 19983834 19984200 -164304462 - THE1C LTR MaLR 0 375 1 2316 102 0 19 chr4 19984219 19984532 -164304130 - AluSc SINE Alu -2 307 1 286 339 21 12 chr4 19984685 19984856 -164303806 - MIR SINE MIR -66 142 19 21 0 0 0 chr4 19984856 19984877 -164303785 + AT_rich Low_complexity Low_complexity 1 21 0 323 305 59 62 chr4 19984909 19985250 -164303412 - HAL1 LINE L1 -1532 975 636 228 70 35 35 chr4 19988158 19988215 -164300447 + (TCTA)n Simple_repeat Simple_repeat 3 59 0 27 62 0 0 chr4 19988332 19988380 -164300282 + AT_rich Low_complexity Low_complexity 1 48 0 320 285 73 8 chr4 19989445 19989568 -164299094 + L2 LINE L2 3141 3271 -1 287 268 143 0 chr4 19989794 19989906 -164298756 + MIR SINE MIR 135 262 0 246 62 0 0 chr4 19990115 19990147 -164298515 + (CA)n Simple_repeat Simple_repeat 1 32 0 218 191 16 63 chr4 19991080 19991143 -164297519 + MIR SINE MIR 87 146 -62 326 309 13 54 chr4 19991378 19991527 -164297135 + MIR SINE MIR 118 260 -2 2106 92 17 17 chr4 19991541 19991834 -164296828 + AluSx SINE Alu 1 293 -19 199 250 250 64 chr4 19992209 19992349 -164296313 - MIR SINE MIR -58 204 39 216 0 0 0 chr4 19992586 19992610 -164296052 + (T)n Simple_repeat Simple_repeat 1 24 0 2628 39 0 19 chr4 19992668 19992980 -164295682 + AluY SINE Alu 1 306 -5 635 276 183 29 chr4 19993697 19994074 -164294588 + L2 LINE L2 2879 3313 0 195 42 0 0 chr4 19994872 19994896 -164293766 + (T)n Simple_repeat Simple_repeat 1 24 0 371 244 166 67 chr4 19995162 19995229 -164293433 + MER112 DNA MER1_type 1 60 -200 315 0 0 0 chr4 19995229 19995264 -164293398 + (CA)n Simple_repeat Simple_repeat 2 36 0 371 244 166 67 chr4 19995264 19995389 -164293273 + MER112 DNA MER1_type 60 212 -48 195 342 25 13 chr4 19995407 19995486 -164293176 - MIR3 SINE MIR -45 163 84 1037 258 87 88 chr4 19995915 19996469 -164292193 + MLT1H1 LTR MaLR 1 553 -2 595 236 40 40 chr4 19996557 19996731 -164291931 + MIR SINE MIR 89 262 0 225 378 35 35 chr4 19997218 19997390 -164291272 - L2 LINE L2 -9 3263 3092 2251 121 3 6 chr4 19997646 19997959 -164290703 + AluSq SINE Alu 1 312 -1 2230 106 10 7 chr4 19998130 19998431 -164290231 - AluSx SINE Alu -10 302 1 204 309 69 117 chr4 19998503 19998794 -164289868 - L2 LINE L2 -66 3206 2930 368 259 22 44 chr4 19999731 19999866 -164288796 - LTR67 LTR ERVL 0 557 426 2580 46 7 0 chr4 20000187 20000494 -164288168 + AluY SINE Alu 1 309 -2 365 293 8 30 chr4 20000938 20001071 -164287591 - MIR SINE MIR -13 249 120 1922 132 45 3 chr4 20001071 20001358 -164287304 + AluSx SINE Alu 1 299 -13 297 0 0 0 chr4 20001692 20001725 -164286937 + (CA)n Simple_repeat Simple_repeat 2 34 0 * 302 80 20 0 chr4 20001724 20001774 -164286888 + (TA)n Simple_repeat Simple_repeat 1 51 0 200 274 0 32 chr4 20003152 20003214 -164285448 - MIR SINE MIR -38 224 165 256 158 0 0 chr4 20003222 20003260 -164285402 + MER1B DNA MER1_type 1 38 -299 * 1381 139 0 10 chr4 20003257 20003465 -164285197 + MER1B DNA MER1_type 134 339 0 193 29 59 0 chr4 20004606 20004640 -164284022 + (TTTTG)n Simple_repeat Simple_repeat 5 40 0 533 258 186 21 chr4 20005082 20005407 -164283255 - MLT1J2 LTR MaLR 0 450 77 752 266 15 5 chr4 20007400 20007603 -164281059 - MIR SINE MIR -40 222 18 254 335 103 46 chr4 20007939 20008133 -164280529 - L2 LINE L2 -24 3248 3044 327 340 82 19 chr4 20008159 20008365 -164280297 + MIR SINE MIR 33 251 -11 847 216 28 11 chr4 20009071 20009252 -164279410 + MLT1A2 LTR MaLR 4 187 -187 323 169 14 0 chr4 20009252 20009323 -164279339 + CT-rich Low_complexity Low_complexity 1 72 0 735 223 13 46 chr4 20009323 20009522 -164279140 + MLT1B LTR MaLR 173 374 -7 387 171 73 0 chr4 20009621 20009703 -164278959 + Charlie8 DNA MER1_type 189 276 -2141 22 0 0 0 chr4 20009889 20009911 -164278751 + AT_rich Low_complexity Low_complexity 1 22 0 719 150 150 0 chr4 20010112 20010232 -164278430 + FRAM SINE Alu 20 157 -19 373 276 131 0 chr4 20010497 20010642 -164278020 - MIR SINE MIR 0 262 99 931 55 0 0 chr4 20011597 20011706 -164276956 - THE1B LTR MaLR -255 109 1 299 288 27 55 chr4 20012934 20013080 -164275582 - L2 LINE L2 0 3313 3172 2500 55 0 3 chr4 20013382 20013692 -164274970 + AluY SINE Alu 1 309 -2 928 221 142 12 chr4 20013818 20014149 -164274513 - LTR37A LTR ERV1 0 426 53 994 167 5 21 chr4 20014408 20014600 -164274062 + MER53 DNA DNA 1 189 0 2501 64 0 10 chr4 20015204 20015517 -164273145 + AluY SINE Alu 1 310 -1 228 211 211 0 chr4 20016019 20016095 -164272567 + MIR SINE MIR 77 168 -94 482 291 0 0 chr4 20016176 20016303 -164272359 - MIR SINE MIR -56 206 80 2325 110 0 0 chr4 20016303 20016602 -164272060 - AluSg SINE Alu -11 299 1 2768 198 16 46 chr4 20016863 20017055 -164271607 - L1MC3 LINE L1 0 7785 7589 1234 197 53 4 chr4 20017055 20017283 -164271379 - MER8 DNA MER2_type 0 239 1 2768 198 16 46 chr4 20017283 20017697 -164270965 - L1MC3 LINE L1 -196 7589 7197 281 161 125 40 chr4 20017706 20017803 -164270859 - MLT1F1 LTR MaLR -383 166 35 788 183 37 12 chr4 20017803 20017967 -164270695 - L1MC3 LINE L1 -700 7085 6918 439 199 21 9 chr4 20017965 20018051 -164270611 - L1MC3 LINE L1 -1082 6703 6631 * 1605 164 29 4 chr4 20018051 20018346 -164270316 - AluJb SINE Alu 0 302 1 439 199 21 9 chr4 20018346 20018360 -164270302 - L1MC3 LINE L1 -1154 6631 6619 255 320 53 53 chr4 20018735 20018885 -164269777 + L2 LINE L2 2629 2778 -536 387 244 134 8 chr4 20018886 20019005 -164269657 - MER96 DNA MER1_type? 0 175 42 289 265 165 45 chr4 20019005 20019266 -164269396 + L2 LINE L2 2776 3063 -209 233 292 15 0 chr4 20019479 20019544 -164269118 - L2 LINE L2 -203 3069 3004 236 219 110 27 chr4 20019580 20019653 -164269009 - MER116 DNA Mariner -1 79 1 620 250 41 51 chr4 20019680 20019876 -164268786 - MIR SINE MIR -44 218 25 227 192 53 72 chr4 20020464 20020557 -164268105 + MIR SINE MIR 117 201 -7 285 192 0 0 chr4 20021404 20021456 -164267206 - MIR SINE MIR -161 101 50 340 211 105 0 chr4 20021988 20022064 -164266598 + MIR SINE MIR 154 237 -25 2243 106 0 0 chr4 20022780 20023082 -164265580 - AluSg SINE Alu -8 302 1 210 37 0 0 chr4 20023082 20023109 -164265553 + (TTG)n Simple_repeat Simple_repeat 2 28 0 781 233 135 47 chr4 20023716 20024034 -164264628 - MER7A DNA MER2_type -2 344 1 213 349 85 23 chr4 20024046 20024175 -164264487 + MIR SINE MIR 16 152 -110 483 213 130 53 chr4 20024305 20024401 -164264261 + MIR SINE MIR 69 156 -106 2086 123 3 10 chr4 20024401 20024709 -164263953 - AluSx SINE Alu -6 306 1 483 213 130 53 chr4 20024709 20024781 -164263881 + MIR SINE MIR 156 250 -12 509 189 6 63 chr4 20024920 20025079 -164263583 + L2 LINE L2 3164 3313 0 2178 113 0 3 chr4 20026733 20027024 -164261638 - AluSx SINE Alu -20 292 3 276 372 33 0 chr4 20027065 20027186 -164261476 + L2 LINE L2 3143 3267 -5 456 265 13 46 chr4 20027871 20028022 -164260640 - L2 LINE L2 -7 3306 3161 280 308 51 0 chr4 20029948 20030026 -164258636 - MIR SINE MIR -70 192 111 251 176 111 65 chr4 20030041 20030149 -164258513 + MIR3 SINE MIR 4 116 -92 23 54 0 0 chr4 20030232 20030269 -164258393 + AT_rich Low_complexity Low_complexity 1 37 0 730 270 87 93 chr4 20031155 20031640 -164257022 + L2 LINE L2 2832 3313 0 2181 112 0 3 chr4 20031708 20032004 -164256658 + AluSg SINE Alu 2 296 -14 281 325 133 0 chr4 20032015 20032135 -164256527 - L2 LINE L2 0 3272 3137 1337 192 192 6 chr4 20032282 20032626 -164256036 - MLT1C LTR MaLR -7 460 53 183 406 10 10 chr4 20033389 20033490 -164255172 + MIR SINE MIR 13 113 -149 207 309 128 38 chr4 20033777 20033834 -164254828 + L2 LINE L2 3024 3074 -239 2210 124 0 0 chr4 20033834 20034140 -164254522 + AluSx SINE Alu 1 306 -6 207 309 128 38 chr4 20034140 20034347 -164254315 + L2 LINE L2 3074 3312 -1 248 273 61 10 chr4 20034718 20034817 -164253845 - L3 LINE CR1 -294 1283 1180 264 346 0 0 chr4 20035424 20035502 -164253160 - MIR3 SINE MIR -17 191 114 * 461 240 32 55 chr4 20035493 20035660 -164253002 + MIR SINE MIR 44 212 -43 278 347 113 16 chr4 20035707 20035831 -164252831 - L2 LINE L2 -10 3262 3127 705 261 32 16 chr4 20036515 20036703 -164251959 - MIR SINE MIR -7 255 65 348 328 106 46 chr4 20036712 20037228 -164251434 + L2 LINE L2 2672 3223 -49 * 587 315 25 68 chr4 20037195 20037289 -164251373 + L2 LINE L2 2934 3030 -283 1061 192 37 28 chr4 20037289 20037503 -164251159 + MER20 DNA MER1_type 2 217 -2 587 315 25 68 chr4 20037503 20037805 -164250857 + L2 LINE L2 3030 3313 0 182 254 200 0 chr4 20038084 20038139 -164250523 - MIR3 SINE MIR -28 180 115 271 290 14 0 chr4 20038186 20038255 -164250407 - MIR SINE MIR -106 102 33 365 204 51 71 chr4 20038535 20038633 -164250029 - L2 LINE L2 -41 3231 3136 649 270 71 22 chr4 20038787 20039013 -164249649 - MIR SINE MIR 0 262 26 540 245 117 0 chr4 20039109 20039272 -164249390 - MIR SINE MIR -14 248 67 1097 193 32 16 chr4 20039273 20039522 -164249140 - L1MB7 LINE L1 -244 5940 5688 545 318 10 16 chr4 20039610 20039802 -164248860 + MIR SINE MIR 13 203 -59 2309 92 3 7 chr4 20040179 20040484 -164248178 - AluSg SINE Alu -6 304 1 855 188 0 20 chr4 20040487 20040636 -164248026 + AluJo/FRAM SINE Alu 166 311 -1 3354 128 23 2 chr4 20040662 20041147 -164247515 + MER1A DNA MER1_type 32 526 -3 573 258 35 76 chr4 20041456 20041770 -164246892 - L1ME4a LINE L1 -232 5889 5589 194 208 21 21 chr4 20041975 20042023 -164246639 - L2 LINE L2 0 3313 3266 1113 314 67 25 chr4 20042422 20043020 -164245642 - L2 LINE L2 -556 2758 2136 488 316 47 0 chr4 20043683 20043873 -164244789 + MIR SINE MIR 3 201 -61 22 80 0 0 chr4 20044029 20044079 -164244583 + AT_rich Low_complexity Low_complexity 1 50 0 2413 90 3 0 chr4 20044761 20045071 -164243591 + AluSq SINE Alu 1 311 -2 799 296 4 4 chr4 20045390 20045616 -164243046 + MIR SINE MIR 37 262 0 21 0 0 0 chr4 20046142 20046163 -164242499 + AT_rich Low_complexity Low_complexity 1 21 0 411 320 36 32 chr4 20047297 20047547 -164241115 + L1MC4a LINE L1 5589 5810 -360 2273 96 14 0 chr4 20047555 20047846 -164240816 + AluSx SINE Alu 1 295 -17 333 0 0 0 chr4 20047851 20047888 -164240774 + (CA)n Simple_repeat Simple_repeat 2 38 0 253 266 0 43 chr4 20047891 20047985 -164240677 + L1MC4 LINE L1 6614 6703 -1339 21 36 0 0 chr4 20048350 20048378 -164240284 + AT_rich Low_complexity Low_complexity 1 28 0 380 264 245 6 chr4 20050387 20050546 -164238116 - MIR SINE MIR 0 262 66 251 235 130 7 chr4 20050562 20050680 -164237982 + MIR SINE MIR 2 216 -46 345 47 0 0 chr4 20050880 20050923 -164237739 + (TG)n Simple_repeat Simple_repeat 2 44 0 405 0 0 0 chr4 20051238 20051283 -164237379 + (TG)n Simple_repeat Simple_repeat 1 45 0 2479 82 99 6 chr4 20051630 20051973 -164236689 + THE1C LTR MaLR 1 375 0 1107 137 0 23 chr4 20052151 20052326 -164236336 - AluSx SINE Alu -20 292 122 920 128 0 8 chr4 20052363 20052496 -164236166 - AluSx SINE Alu -181 132 1 304 299 19 78 chr4 20052675 20052829 -164235833 - MIR SINE MIR -51 211 67 333 305 13 58 chr4 20053043 20053200 -164235462 + MIR SINE MIR 2 151 -63 363 297 51 7 chr4 20053211 20053349 -164235313 - L2 LINE L2 0 3313 3170 336 253 0 0 chr4 20053377 20053452 -164235210 + MIR SINE MIR 178 252 -10 294 238 159 24 chr4 20053644 20053770 -164234892 + L2 LINE L2 3159 3301 -12 494 232 46 46 chr4 20057572 20057723 -164230939 + L2 LINE L2 3163 3313 0 1955 121 3 30 chr4 20057890 20058195 -164230467 - AluSx SINE Alu -15 297 1 202 197 291 39 chr4 20058672 20058799 -164229863 - MIR3 SINE MIR -31 177 19 420 20 0 0 chr4 20058805 20058854 -164229808 + (CA)n Simple_repeat Simple_repeat 1 49 0 2259 118 0 13 chr4 20059495 20059801 -164228861 + AluSx SINE Alu 1 302 -10 386 270 0 86 chr4 20061470 20061633 -164227029 + MIR SINE MIR 25 173 -89 221 258 15 0 chr4 20061683 20061749 -164226913 + (TGAA)n Simple_repeat Simple_repeat 2 68 0 186 305 23 62 chr4 20062076 20062204 -164226458 + L3b LINE CR1 1295 1417 -166 352 194 0 0 chr4 20062339 20062401 -164226261 - Alu SINE Alu 0 302 241 191 203 68 51 chr4 20062534 20062593 -164226069 - L2 LINE L2 0 3272 3213 527 197 16 25 chr4 20063536 20063658 -164225004 - MER53 DNA DNA -68 121 1 218 356 48 19 chr4 20063935 20064039 -164224623 - L2 LINE L2 -38 3234 3128 997 181 62 0 chr4 20064102 20064312 -164224350 + L1MA9 LINE L1 6058 6280 -32 2147 101 51 3 chr4 20064739 20065035 -164223627 - AluSg SINE Alu 0 310 1 201 339 122 17 chr4 20065284 20065399 -164223263 - L2 LINE L2 0 3272 3146 2042 134 0 0 chr4 20067532 20067824 -164220838 - AluSx SINE Alu -20 292 1 242 277 109 20 chr4 20068146 20068247 -164220415 + L2 LINE L2 3155 3264 -8 425 329 108 18 chr4 20069196 20069418 -164219244 + MIR SINE MIR 20 261 -1 264 358 0 0 chr4 20069467 20069534 -164219128 - MIR SINE MIR -105 103 37 2423 78 0 7 chr4 20069553 20069861 -164218801 + AluY SINE Alu 1 306 -5 2112 121 0 0 chr4 20069872 20070182 -164218480 + AluSx SINE Alu 1 310 0 261 83 0 0 chr4 20070890 20070926 -164217736 + (TTA)n Simple_repeat Simple_repeat 2 37 0 21 36 0 0 chr4 20071096 20071124 -164217538 + AT_rich Low_complexity Low_complexity 1 28 0 24 67 0 0 chr4 20071194 20071239 -164217423 + AT_rich Low_complexity Low_complexity 1 45 0 186 179 26 0 chr4 20072702 20072741 -164215921 - L2 LINE L2 0 3313 3274 485 256 74 17 chr4 20072882 20073058 -164215604 + MIR SINE MIR 74 259 -3 1320 237 97 25 chr4 20073058 20073489 -164215173 + MLT1C LTR MaLR 1 462 -5 271 304 152 27 chr4 20073526 20073638 -164215024 - MIR3 SINE MIR -15 193 68 361 324 22 50 chr4 20074389 20074568 -164214094 + MIR SINE MIR 81 254 -8 4051 180 57 28 chr4 20074714 20075507 -164213155 - L1MB7 LINE L1 -5 6179 5317 2205 108 0 0 chr4 20075507 20075802 -164212860 - AluSg SINE Alu -2 308 14 4051 180 57 28 chr4 20075802 20076413 -164212249 - L1MB7 LINE L1 -867 5317 4725 482 262 40 0 chr4 20076423 20076572 -164212090 + L2 LINE L2 2603 2757 -557 370 274 49 134 chr4 20078151 20078480 -164210182 - MER102b DNA MER1_type -4 337 37 233 281 67 56 chr4 20078554 20078643 -164210019 - L2 LINE L2 0 3272 3183 342 326 0 0 chr4 20078911 20079009 -164209653 - L2 LINE L2 -1 3312 3215 221 346 39 24 chr4 20079390 20079517 -164209145 + L2 LINE L2 3139 3267 -5 665 216 8 16 chr4 20079767 20079892 -164208770 - FLAM_A SINE Alu -9 124 1 2312 108 10 0 chr4 20081378 20081683 -164206979 - AluSx SINE Alu -4 308 1 2449 228 16 53 chr4 20081683 20081779 -164206883 + L1M4 LINE L1 2234 2332 -3814 1745 168 3 3 chr4 20081779 20082070 -164206592 + AluSx SINE Alu 1 291 -21 2449 228 16 53 chr4 20082070 20082764 -164205898 + L1M4 LINE L1 2332 2995 -3151 887 169 11 22 chr4 20083283 20083461 -164205201 - THE1B LTR MaLR 0 364 189 430 157 20 0 chr4 20083505 20083607 -164205055 + (TA)n Simple_repeat Simple_repeat 2 105 0 6996 116 12 39 chr4 20083607 20084723 -164203939 + Tigger1 DNA MER2_type 393 1478 -940 2191 118 7 0 chr4 20084723 20085020 -164203642 + AluSx SINE Alu 1 299 -13 617 228 113 80 chr4 20085020 20085331 -164203331 - HAL1b LINE L1 -879 469 149 1725 278 100 2 chr4 20085334 20086204 -164202458 + L2 LINE L2 2224 3184 -129 1889 177 74 5 chr4 20086551 20086930 -164201732 + L1MA9 LINE L1 5907 6311 -1 2002 115 0 4 chr4 20087165 20087435 -164201227 - AluSx SINE Alu -43 269 1 227 185 93 0 chr4 20087676 20087730 -164200932 - MIR SINE MIR -118 144 86 384 241 8 55 chr4 20087832 20088195 -164200467 + CT-rich Low_complexity Low_complexity 1 346 0 213 241 0 35 chr4 20088197 20088255 -164200407 + C-rich Low_complexity Low_complexity 1 56 0 432 207 24 30 chr4 20088256 20088420 -164200242 + CT-rich Low_complexity Low_complexity 3 165 0 225 307 111 41 chr4 20089061 20089285 -164199377 - L2 LINE L2 -270 3002 2763 348 340 20 7 chr4 20090209 20090356 -164198306 + MLT1K LTR MaLR 22 170 -418 340 189 22 56 chr4 20090589 20090679 -164197983 + MLT1K LTR MaLR 485 571 -17 427 290 21 11 chr4 20091035 20091280 -164197382 + MER41B LTR ERV1 51 430 -205 183 217 33 50 chr4 20091682 20091742 -164196920 - L2 LINE L2 -568 2746 2688 879 130 18 6 chr4 20092047 20092216 -164196446 + GA-rich Low_complexity Low_complexity 3 173 0 227 314 123 34 chr4 20093358 20093562 -164195100 - L2 LINE L2 -405 2909 2688 207 100 0 0 chr4 20093846 20093876 -164194786 + (TCTCC)n Simple_repeat Simple_repeat 5 34 0 241 65 0 0 chr4 20094066 20094097 -164194565 + MLT1C LTR MaLR 389 419 -48 241 254 116 89 chr4 20094160 20094384 -164194278 - MER102b DNA MER1_type -9 332 103 1810 278 139 34 chr4 20094432 20095468 -164193194 - L2 LINE L2 -36 3277 2132 1391 293 41 24 chr4 20095468 20095976 -164192686 - L2 LINE L2 -2097 1217 701 336 246 310 0 chr4 20095982 20096124 -164192538 - MER5A DNA MER1_type -2 187 2 190 267 0 0 chr4 20096135 20096180 -164192482 - L2 LINE L2 -2612 702 658 419 297 10 74 chr4 20096260 20096462 -164192200 - MER5A DNA MER1_type 0 189 1 464 246 66 0 chr4 20096481 20096603 -164192059 + MIR SINE MIR 77 206 -56 195 256 39 39 chr4 20096739 20096817 -164191845 - MIR SINE MIR -12 250 173 1317 197 126 19 chr4 20097054 20097672 -164190990 + LTR50 LTR ERVL 1 779 -16 294 29 0 0 chr4 20097674 20097709 -164190953 + (TC)n Simple_repeat Simple_repeat 1 35 0 180 0 0 0 chr4 20097708 20097728 -164190934 + (CA)n Simple_repeat Simple_repeat 1 20 0 * 208 288 41 65 chr4 20098000 20098170 -164190492 + L2 LINE L2 3088 3253 -60 2317 154 55 13 chr4 20098171 20098625 -164190037 + Charlie4a DNA MER1_type 1 473 -35 1288 217 67 9 chr4 20098625 20098970 -164189692 + L1M4 LINE L1 4955 5319 -827 442 74 0 0 chr4 20099070 20099124 -164189538 + Tigger4(Zombi) DNA MER2_type 2678 2731 0 1350 168 50 50 chr4 20099245 20099567 -164189095 + MER33 DNA MER1_type 2 323 -1 208 250 0 0 chr4 20099749 20099793 -164188869 + MIR SINE MIR 195 238 -24 829 284 29 16 chr4 20100195 20100438 -164188224 - MIR SINE MIR -9 253 8 345 272 136 43 chr4 20100733 20100800 -164187862 + L2 LINE L2 3113 3172 -141 183 42 0 0 chr4 20100800 20100824 -164187838 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 345 272 136 43 chr4 20100824 20100940 -164187722 + L2 LINE L2 3172 3313 0 187 238 24 0 chr4 20100946 20100988 -164187674 - L2 LINE L2 -19 3253 3211 200 290 45 71 chr4 20101303 20101458 -164187204 - L2 LINE L2 -213 3059 2909 247 324 10 10 chr4 20102159 20102261 -164186401 - L3 LINE CR1 -161 1416 1315 194 228 89 79 chr4 20102294 20102395 -164186267 + MIR SINE MIR 44 145 -117 1997 125 3 10 chr4 20102801 20103104 -164185558 - L1MA5 LINE L1 -2 6298 5998 375 193 0 0 chr4 20104557 20104640 -164184022 + CT-rich Low_complexity Low_complexity 2 84 0 183 227 213 13 chr4 20105363 20105438 -164183224 + MIR SINE MIR 26 115 -147 1678 231 58 22 chr4 20105678 20106124 -164182538 + MLT1C LTR MaLR 6 467 0 339 345 81 39 chr4 20106125 20106625 -164182037 + L2 LINE L2 2730 3272 0 1244 167 50 0 chr4 20106882 20107080 -164181582 + AluJb SINE Alu 86 293 -19 657 247 96 58 chr4 20107195 20107260 -164181402 - L1MC4a LINE L1 -1884 5924 5863 2357 70 0 0 chr4 20107260 20107545 -164181117 + AluY SINE Alu 1 285 -26 657 247 96 58 chr4 20107545 20107771 -164180891 - L1MC4a LINE L1 -1945 5863 5622 6518 121 23 0 chr4 20107992 20108989 -164179673 + L1MA9 LINE L1 5293 6312 0 2162 118 0 13 chr4 20109286 20109599 -164179063 + AluSc SINE Alu 1 309 0 254 261 0 14 chr4 20109987 20110056 -164178606 + L1ME LINE L1 5597 5664 -457 239 154 0 19 chr4 20110131 20110183 -164178479 + (TA)n Simple_repeat Simple_repeat 1 51 0 225 67 0 0 chr4 20110191 20110236 -164178426 + LTR66 LTR ERVL 394 438 -172 345 109 0 0 chr4 20110236 20110291 -164178371 + (GA)n Simple_repeat Simple_repeat 1 55 0 3336 130 8 12 chr4 20110405 20110913 -164177749 - L1PA16 LINE L1 -9 6157 5652 2865 95 3 0 chr4 20110913 20111277 -164177385 - L1PB1 LINE L1 0 6151 5782 2675 137 24 18 chr4 20111287 20111971 -164176691 - L1PB1 LINE L1 -498 5668 4983 192 40 0 0 chr4 20112031 20112056 -164176606 + (CA)n Simple_repeat Simple_repeat 2 26 0 245 73 0 24 chr4 20112212 20112253 -164176409 + (TC)n Simple_repeat Simple_repeat 1 40 0 21 0 0 0 chr4 20112458 20112479 -164176183 + AT_rich Low_complexity Low_complexity 1 21 0 279 271 42 8 chr4 20112492 20112610 -164176052 + L1ME LINE L1 5720 5841 -280 775 332 54 55 chr4 20112621 20113170 -164175492 - L2 LINE L2 0 3272 2724 238 78 20 20 chr4 20113170 20113221 -164175441 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 1785 150 26 0 chr4 20113229 20113495 -164175167 - AluSx SINE Alu -37 275 3 775 332 54 55 chr4 20113495 20113630 -164175032 - L2 LINE L2 -555 2717 2580 1761 211 114 13 chr4 20113704 20114337 -164174325 - L1MCb LINE L1 -3939 2806 2073 * 4266 186 33 8 chr4 20114336 20115213 -164173449 - L1PB4 LINE L1 -1116 5030 4132 1719 161 43 2 chr4 20115211 20115663 -164172999 + L1PB4 LINE L1 5017 5479 -677 * 5258 94 12 1 chr4 20115663 20116355 -164172307 - L1PA10 LINE L1 -5 6163 5465 4058 149 32 11 chr4 20116358 20117021 -164171641 + L1PB4 LINE L1 5480 6156 0 3766 214 100 18 chr4 20117022 20118563 -164170099 - L1MCb LINE L1 -4490 2074 411 394 244 0 0 chr4 20118563 20118641 -164170021 + MER20 DNA MER1_type 141 218 -1 414 330 57 14 chr4 20118644 20118853 -164169809 - L2 LINE L2 -731 2583 2366 243 125 0 0 chr4 20118994 20119034 -164169628 + (TG)n Simple_repeat Simple_repeat 1 40 0 2173 125 0 0 chr4 20119179 20119475 -164169187 - AluSx SINE Alu -16 296 1 229 274 0 0 chr4 20119583 20119634 -164169028 + (TG)n Simple_repeat Simple_repeat 2 52 0 1106 283 61 23 chr4 20119813 20120205 -164168457 + MLT1I LTR MaLR 3 409 0 832 240 64 0 chr4 20120205 20120409 -164168253 - MIR SINE MIR -10 252 36 2465 97 0 0 chr4 20121048 20121356 -164167306 - AluSq SINE Alu -5 308 1 1367 178 90 90 chr4 20121615 20121904 -164166758 - MLT1A1 LTR MaLR 0 365 74 2409 82 0 3 chr4 20121904 20122208 -164166454 + AluY SINE Alu 3 305 -6 1367 178 90 90 chr4 20122208 20122283 -164166379 - MLT1A1 LTR MaLR -290 75 1 247 353 33 27 chr4 20122406 20122556 -164166106 + L2 LINE L2 2932 3082 -190 1744 102 4 0 chr4 20123165 20123390 -164165272 - AluSp SINE Alu -85 228 3 199 81 0 108 chr4 20123468 20123505 -164165157 - MIR SINE MIR -10 252 220 477 252 113 0 chr4 20125407 20125566 -164163096 - MIR SINE MIR 0 262 86 2950 94 11 3 chr4 20125839 20126211 -164162451 + THE1C LTR MaLR 1 375 0 4364 77 3 19 chr4 20126573 20127147 -164161515 + L1PB2 LINE L1 5587 6151 0 766 196 30 12 chr4 20127285 20127453 -164161209 + MER104 DNA Tc2 6 176 -4 316 367 61 0 chr4 20127502 20127600 -164161062 - L2 LINE L2 -16 3256 3153 385 170 170 11 chr4 20128129 20128223 -164160439 + MER5A DNA MER1_type 4 112 -77 192 97 0 0 chr4 20128841 20128872 -164159790 + (TTG)n Simple_repeat Simple_repeat 2 32 0 1422 204 25 4 chr4 20128877 20129151 -164159511 - AluJb SINE Alu -30 282 3 704 163 98 0 chr4 20129152 20129275 -164159387 - AluJb SINE Alu -176 136 2 2050 133 0 3 chr4 20129288 20129595 -164159067 - AluSx SINE Alu 0 306 1 285 261 36 18 chr4 20129790 20129901 -164158761 + MER113 DNA MER1_type? 8 120 -401 21 36 0 0 chr4 20129950 20129978 -164158684 + AT_rich Low_complexity Low_complexity 1 28 0 1425 212 8 79 chr4 20130077 20130569 -164158093 - L1MC4 LINE L1 0 7808 7347 1151 197 62 97 chr4 20130606 20130914 -164157748 + L1MC4 LINE L1 6842 7130 -912 1942 146 10 10 chr4 20130914 20131215 -164157447 + AluSx SINE Alu 4 304 -8 1151 197 62 97 chr4 20131215 20131372 -164157290 + L1MC4 LINE L1 7130 7291 -751 413 319 7 22 chr4 20131427 20131565 -164157097 + MER5A DNA MER1_type 54 189 0 21 0 0 0 chr4 20132640 20132661 -164156001 + AT_rich Low_complexity Low_complexity 1 21 0 527 276 102 30 chr4 20132675 20132906 -164155756 - MIR SINE MIR -4 258 14 463 220 76 34 chr4 20133121 20133239 -164155423 + L2 LINE L2 3175 3297 -16 745 277 85 0 chr4 20133924 20134112 -164154550 + MER63A DNA MER1_type 2 205 -5 321 238 36 0 chr4 20134400 20134484 -164154178 + MIR SINE MIR 70 156 -106 234 0 0 0 chr4 20134550 20134576 -164154086 + (T)n Simple_repeat Simple_repeat 1 26 0 2595 139 35 2 chr4 20134580 20134983 -164153679 - LTR45B LTR ERV1 -71 418 3 372 238 38 38 chr4 20134983 20135088 -164153574 + MIR SINE MIR 155 259 -3 215 139 0 23 chr4 20135619 20135662 -164153000 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 397 272 238 19 chr4 20135799 20136206 -164152456 + L2 LINE L2 2624 3130 -183 2531 200 95 25 chr4 20137416 20138057 -164150605 - MER76 LTR ERV -2 686 1 438 325 13 20 chr4 20138058 20138209 -164150453 + L2 LINE L2 3163 3312 -1 2272 119 0 6 chr4 20139720 20140032 -164148630 - AluSq SINE Alu -3 310 1 368 348 83 43 chr4 20140075 20140472 -164148190 - L3 LINE CR1 -884 693 281 180 237 165 41 chr4 20140495 20140592 -164148070 - MIR3 SINE MIR -19 189 81 448 192 0 0 chr4 20140795 20140873 -164147789 + MER20 DNA MER1_type 112 189 -30 285 230 0 0 chr4 20141105 20141179 -164147483 + (CA)n Simple_repeat Simple_repeat 2 75 0 1160 189 38 9 chr4 20141396 20141608 -164147054 + MER20 DNA MER1_type 1 218 -1 248 327 6 42 chr4 20141786 20141951 -164146711 + L1MEc LINE L1 1921 2079 -4317 587 71 12 0 chr4 20141960 20142045 -164146617 + (TCTA)n Simple_repeat Simple_repeat 1 86 0 2236 122 55 12 chr4 20142061 20142404 -164146258 + THE1B LTR MaLR 1 358 -6 638 156 40 0 chr4 20142421 20142594 -164146068 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 315 259 61 41 chr4 20142635 20142782 -164145880 + L1MEc LINE L1 2181 2330 -4066 497 290 90 25 chr4 20142860 20143060 -164145602 - MIR SINE MIR -43 219 7 304 294 34 42 chr4 20143240 20143359 -164145303 - LTR67 LTR ERVL -11 546 429 201 39 0 0 chr4 20144094 20144120 -164144542 + (CA)n Simple_repeat Simple_repeat 2 27 0 207 0 0 0 chr4 20145066 20145089 -164143573 + (A)n Simple_repeat Simple_repeat 1 23 0 686 201 71 19 chr4 20145698 20145852 -164142810 - MIR SINE MIR -34 228 67 1386 162 64 29 chr4 20145872 20146313 -164142349 - LTR54 LTR ERV1 0 403 1 706 200 36 0 chr4 20146865 20147005 -164141657 - MER5A DNA MER1_type -44 145 1 2161 122 0 10 chr4 20147470 20147773 -164140889 - AluJb SINE Alu -12 300 1 2693 142 5 10 chr4 20148077 20148487 -164140175 - L1PA16 LINE L1 0 6166 5759 255 160 20 20 chr4 20148920 20148970 -164139692 - L2 LINE L2 -8 3264 3215 482 119 24 0 chr4 20149419 20149503 -164139159 - L1MA10 LINE L1 0 6334 6249 196 242 48 16 chr4 20149595 20149657 -164139005 - L2 LINE L2 -1045 2269 2206 186 298 21 0 chr4 20149643 20149690 -164138972 + MIR SINE MIR 8 55 -207 * 314 333 106 8 chr4 20149743 20149866 -164138796 + L2 LINE L2 3119 3253 -19 242 302 10 62 chr4 20149968 20150064 -164138598 - L2 LINE L2 -175 3097 3007 492 284 135 62 chr4 20150357 20150808 -164137854 - MLT1J LTR MaLR -23 488 5 201 186 0 0 chr4 20151016 20151044 -164137618 + CT-rich Low_complexity Low_complexity 2 32 -12 2125 138 3 0 chr4 20151044 20151340 -164137322 - AluSx SINE Alu -15 297 1 201 186 0 0 chr4 20151340 20151354 -164137308 + CT-rich Low_complexity Low_complexity 31 44 0 223 175 0 0 chr4 20151754 20151794 -164136868 + (TGAA)n Simple_repeat Simple_repeat 2 41 0 443 316 76 99 chr4 20151827 20152491 -164136171 - L2 LINE L2 -58 3214 2553 263 315 28 9 chr4 20152703 20152811 -164135851 - MIR SINE MIR -125 137 28 387 241 65 80 chr4 20153194 20153393 -164135269 + MIR SINE MIR 49 244 -18 524 219 34 0 chr4 20153417 20153536 -164135126 + MER94 DNA DNA 4 126 -8 458 277 36 0 chr4 20153841 20153978 -164134684 - MIR3 SINE MIR -7 201 60 410 274 43 0 chr4 20154670 20154787 -164133875 - MIR SINE MIR -74 188 67 257 293 113 0 chr4 20154835 20154941 -164133721 + MIR SINE MIR 18 135 -73 357 279 0 0 chr4 20155076 20155162 -164133500 + MIR SINE MIR 156 241 -21 329 268 58 58 chr4 20155465 20155603 -164133059 + MIR SINE MIR 46 183 -79 182 261 114 45 chr4 20156163 20156251 -164132411 + MIR SINE MIR 22 115 -147 208 324 29 39 chr4 20156582 20156605 -164132057 + L2 LINE L2 2947 2969 -303 1874 163 64 14 chr4 20156605 20156949 -164131713 + MLT1A1 LTR MaLR 5 365 0 208 324 29 39 chr4 20156949 20157027 -164131635 + L2 LINE L2 2969 3047 -225 328 268 62 9 chr4 20157054 20157166 -164131496 + MIR SINE MIR 18 135 -73 802 230 73 90 chr4 20158116 20158422 -164130240 - Tigger8 DNA MER2_type -5 661 364 2561 63 0 3 chr4 20158422 20158725 -164129937 - AluY SINE Alu -9 302 1 802 230 73 90 chr4 20158725 20158883 -164129779 - Tigger8 DNA MER2_type -302 364 205 3399 139 28 15 chr4 20158944 20159478 -164129184 + L1PB4 LINE L1 5616 6156 0 524 309 68 19 chr4 20159572 20159779 -164128883 - Tigger8 DNA MER2_type -425 241 25 1839 149 17 17 chr4 20159795 20160097 -164128565 + AluSx SINE Alu 6 307 -5 192 306 0 0 chr4 20160454 20160503 -164128159 - L2 LINE L2 -5 3267 3219 257 280 44 110 chr4 20160516 20160698 -164127964 + L2 LINE L2 2994 3163 -109 1543 221 17 34 chr4 20160713 20161070 -164127592 + MLT1A1 LTR MaLR 1 351 -14 231 188 0 0 chr4 20161151 20161199 -164127463 + GA-rich Low_complexity Low_complexity 1 48 0 1752 243 61 73 chr4 20161205 20161769 -164126893 + MLT1E LTR MaLR 1 501 -4 1075 8 40 8 chr4 20162330 20162449 -164126213 - L1P1 LINE L1 -499 5656 5533 3465 38 10 2 chr4 20162449 20162841 -164125821 + L1PA4 LINE L1 5750 6152 -3 238 313 26 17 chr4 20164057 20164172 -164124490 - L2 LINE L2 -816 2498 2383 565 252 26 32 chr4 20164422 20164577 -164124085 - L2 LINE L2 0 3313 3160 785 274 108 48 chr4 20164811 20165245 -164123417 + MLT1L LTR MaLR 156 615 0 2419 77 0 10 chr4 20165284 20165596 -164123066 + AluSc SINE Alu 1 309 0 335 286 86 0 chr4 20165605 20165780 -164122882 - L2 LINE L2 -303 3010 2821 270 233 0 55 chr4 20166528 20166601 -164122061 + L3 LINE CR1 898 966 -611 3897 139 12 47 chr4 20166713 20167391 -164121271 - L1MA10 LINE L1 0 6334 5681 1292 122 16 5 chr4 20168211 20168399 -164120263 - AluSp SINE Alu -16 297 108 309 100 0 0 chr4 20168401 20168441 -164120221 - L1PA11 LINE L1 -67 6107 6068 529 73 0 0 chr4 20168441 20168506 -164120156 + L1PA11 LINE L1 6104 6171 -3 615 193 52 62 chr4 20169322 20169514 -164119148 - MER112 DNA MER1_type -4 256 67 23 0 0 0 chr4 20170336 20170359 -164118303 + AT_rich Low_complexity Low_complexity 1 23 0 514 328 50 17 chr4 20170508 20170749 -164117913 + MIR SINE MIR 8 256 -6 354 256 70 31 chr4 20170997 20171126 -164117536 - MIR3 SINE MIR -67 141 8 189 0 0 0 chr4 20171748 20171769 -164116893 + (TG)n Simple_repeat Simple_repeat 2 22 0 198 0 0 0 chr4 20172617 20172639 -164116023 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1478 172 0 47 chr4 20172641 20172937 -164115725 - AluJo SINE Alu -30 282 1 765 319 95 11 chr4 20172964 20173343 -164115319 + LTR67 LTR ERVL 33 443 -114 251 281 49 12 chr4 20173344 20173426 -164115236 + MIR SINE MIR 130 214 -48 470 252 13 96 chr4 20173787 20174017 -164114645 + L1ME4a LINE L1 5835 6045 -76 22 0 0 0 chr4 20174082 20174104 -164114558 + AT_rich Low_complexity Low_complexity 1 22 0 2075 106 32 0 chr4 20174370 20174652 -164114010 - AluSx SINE Alu -21 291 1 275 330 153 0 chr4 20175557 20175675 -164112987 - MIR3 SINE MIR -65 143 8 256 368 34 39 chr4 20175950 20176154 -164112508 + MIR3 SINE MIR 4 206 -2 582 273 99 67 chr4 20176305 20176464 -164112198 - L1MC5 LINE L1 -44 7998 7846 2985 115 14 18 chr4 20176464 20176908 -164111754 - L1PB3 LINE L1 -2 6152 5711 582 273 99 67 chr4 20176908 20177629 -164111033 - L1MC5 LINE L1 -196 7846 7101 2304 81 7 10 chr4 20178392 20178687 -164109975 - AluSx SINE Alu -14 298 5 209 286 112 31 chr4 20178838 20178936 -164109726 + MIR SINE MIR 32 137 -71 732 204 38 5 chr4 20180463 20180649 -164108013 - L1MA4 LINE L1 0 6300 6109 298 331 53 8 chr4 20180909 20181042 -164107620 + L2 LINE L2 3125 3263 -9 189 346 39 0 chr4 20181153 20181231 -164107431 - MIR SINE MIR -98 110 30 239 241 63 0 chr4 20181327 20181406 -164107256 + MER103 DNA DNA 82 165 -1 1863 207 49 51 chr4 20181501 20181988 -164106674 + MLT1D LTR MaLR 20 505 0 194 109 65 87 chr4 20182602 20182648 -164106014 + L2 LINE L2 3269 3313 0 316 304 22 43 chr4 20182690 20182828 -164105834 - MIR SINE MIR -120 142 8 626 175 7 91 chr4 20183172 20183315 -164105347 - MER94 DNA DNA -3 131 1 627 260 7 13 chr4 20183405 20183559 -164105103 + MLT1F1 LTR MaLR 3 155 -438 896 182 6 0 chr4 20183574 20183744 -164104918 - MER53 DNA DNA -4 185 15 2717 150 27 23 chr4 20183772 20184246 -164104416 - L1MB2 LINE L1 -18 6153 5678 1378 218 110 5 chr4 20184247 20184693 -164103969 - L1 LINE L1 -2670 3476 2984 306 77 0 0 chr4 20184693 20184732 -164103930 - MER53 DNA DNA -150 39 1 1216 271 90 6 chr4 20184763 20185129 -164103533 + MLT1F1 LTR MaLR 171 567 0 514 205 18 18 chr4 20185652 20185764 -164102898 - L1ME LINE L1 -394 5727 5616 25 31 0 0 chr4 20186003 20186035 -164102627 + AT_rich Low_complexity Low_complexity 1 32 0 308 345 50 47 chr4 20187153 20187411 -164101251 + L1ME LINE L1 4964 5222 -924 413 289 54 82 chr4 20187446 20187740 -164100922 + L1ME LINE L1 5265 5550 -571 306 209 30 0 chr4 20187864 20187931 -164100731 + L1ME4a LINE L1 6047 6115 -6 1985 140 3 0 chr4 20188206 20188506 -164100156 - AluSx SINE Alu -11 301 1 344 280 38 45 chr4 20188523 20188680 -164099982 + MIR SINE MIR 57 212 -50 2272 116 0 3 chr4 20189668 20189979 -164098683 + AluSx SINE Alu 1 310 -2 684 242 121 20 chr4 20189991 20190288 -164098374 - MER46C DNA MER2_type -6 332 6 260 252 151 8 chr4 20190775 20190894 -164097768 - MIR3 SINE MIR -68 140 5 1994 147 0 0 chr4 20191507 20191792 -164096870 - AluSx SINE Alu -27 285 1 2176 247 49 22 chr4 20192111 20192991 -164095671 - L1M4c LINE L1 -2123 4259 3356 23 0 0 0 chr4 20192998 20193021 -164095641 + AT_rich Low_complexity Low_complexity 1 23 0 471 247 41 62 chr4 20193053 20193357 -164095305 - L1M4c LINE L1 -4013 2550 2254 9949 85 8 9 chr4 20193357 20195509 -164093153 + L1PA7 LINE L1 3995 6143 -11 471 247 41 62 chr4 20195509 20195572 -164093090 - L1M4c LINE L1 -4309 2254 2191 48 60 0 0 chr4 20195720 20195803 -164092859 + AT_rich Low_complexity Low_complexity 1 83 0 4109 209 22 0 chr4 20195859 20196676 -164091986 + L1PA12 LINE L1 1 835 -6746 4851 114 6 0 chr4 20196676 20197396 -164091266 + L1PA14 LINE L1 5435 6158 -3 1050 323 38 14 chr4 20197401 20198036 -164090626 - L1M4c LINE L1 -4568 1995 1204 347 284 20 10 chr4 20198057 20198159 -164090503 - MIR SINE MIR -3 259 157 1075 273 53 28 chr4 20198219 20198406 -164090256 + MLT1J1 LTR MaLR 41 222 -224 1528 186 0 58 chr4 20198406 20198717 -164089945 + AluJo SINE Alu 19 311 -1 1075 273 53 28 chr4 20198717 20198925 -164089737 + MLT1J1 LTR MaLR 222 446 0 353 323 8 23 chr4 20198950 20199083 -164089579 - MIR SINE MIR -121 141 11 198 255 226 29 chr4 20199321 20199423 -164089239 - MIR SINE MIR -37 225 104 229 283 17 17 chr4 20199450 20199510 -164089152 + L2 LINE L2 3201 3260 -12 357 234 113 10 chr4 20201439 20201562 -164087100 - MIR SINE MIR -67 141 34 329 276 71 0 chr4 20202705 20202803 -164085859 - MIR SINE MIR -58 204 100 313 257 92 46 chr4 20202814 20202923 -164085739 - MIR SINE MIR -1 261 148 180 253 88 77 chr4 20202967 20203058 -164085604 - L2 LINE L2 -2902 412 321 310 275 25 0 chr4 20203236 20203326 -164085336 + MIR SINE MIR 64 143 -65 1760 236 43 52 chr4 20203590 20204170 -164084492 + MLT1E2 LTR MaLR 52 626 0 269 329 69 4 chr4 20204170 20204399 -164084263 - LTR33A LTR ERVL -11 512 269 255 288 105 26 chr4 20204659 20205003 -164083659 - L1M4 LINE L1 -3664 2482 2112 2141 133 36 25 chr4 20205322 20205682 -164082980 + THE1B LTR MaLR 1 364 0 10591 95 7 11 chr4 20205707 20205767 -164082895 + THE1B-int LTR MaLR 64 123 -1457 2189 81 41 14 chr4 20205767 20206062 -164082600 + AluY SINE Alu 1 303 -8 10591 95 7 11 chr4 20206062 20207524 -164081138 + THE1B-int LTR MaLR 123 1580 0 2041 142 31 25 chr4 20207526 20207886 -164080776 + THE1B LTR MaLR 3 364 0 23 0 0 0 chr4 20208164 20208187 -164080475 + AT_rich Low_complexity Low_complexity 1 23 0 313 295 96 0 chr4 20208257 20208413 -164080249 - L1ME3A LINE L1 -294 5876 5706 1892 145 46 25 chr4 20208427 20208793 -164079869 - THE1C LTR MaLR 0 375 2 2022 142 0 3 chr4 20208979 20209267 -164079395 + AluSx SINE Alu 1 287 -25 336 314 78 16 chr4 20209296 20209541 -164079121 + HAL1 LINE L1 590 849 -1658 325 248 61 71 chr4 20209797 20209995 -164078667 + MLT1H LTR MaLR 117 312 -237 333 214 95 71 chr4 20210116 20210242 -164078420 + HAL1 LINE L1 2094 2222 -285 383 310 76 0 chr4 20210336 20210481 -164078181 + MLT1J LTR MaLR 28 183 -328 1088 60 0 0 chr4 20210502 20210636 -164078026 - AluY SINE Alu -14 297 164 311 280 8 8 chr4 20210844 20210976 -164077686 + HAL1 LINE L1 2267 2398 -109 308 336 29 7 chr4 20211711 20211848 -164076814 - MIR3 SINE MIR 0 208 69 23 0 0 0 chr4 20212034 20212057 -164076605 + AT_rich Low_complexity Low_complexity 1 23 0 1812 132 10 0 chr4 20212058 20212346 -164076316 - L1PA13 LINE L1 -9 6154 5864 590 308 61 66 chr4 20212614 20213254 -164075408 - L2 LINE L2 -872 2442 1806 2733 93 3 3 chr4 20213257 20213621 -164075041 - THE1B LTR MaLR 0 364 1 647 327 118 14 chr4 20213847 20214211 -164074451 + L3 LINE CR1 958 1359 -218 302 326 182 0 chr4 20214330 20214462 -164074200 - L2 LINE L2 -5 3267 3112 228 184 0 0 chr4 20215183 20215232 -164073430 + (TG)n Simple_repeat Simple_repeat 2 50 0 2569 121 5 0 chr4 20215500 20215873 -164072789 + THE1C LTR MaLR 1 375 0 280 358 156 0 chr4 20218293 20218402 -164070260 + L2 LINE L2 3129 3254 -18 445 323 32 0 chr4 20218413 20218568 -164070094 + MIR SINE MIR 32 191 -71 2514 39 0 13 chr4 20220528 20220833 -164067829 + AluY SINE Alu 1 301 -10 713 232 171 37 chr4 20221238 20221699 -164066963 + L1MDa LINE L1 1085 1607 -4933 * 1003 219 117 6 chr4 20221696 20222039 -164066623 + L1M4 LINE L1 3475 3855 -2291 1021 167 84 152 chr4 20222041 20222523 -164066139 + MLT2D LTR ERVL 1 512 -8 2614 254 33 9 chr4 20222524 20222647 -164066015 + L1M4 LINE L1 3844 3963 -2183 2598 111 0 11 chr4 20222647 20223015 -164065647 + THE1B LTR MaLR 1 364 0 2614 254 33 9 chr4 20223015 20223239 -164065423 + L1M4 LINE L1 3963 4180 -1966 2402 81 7 0 chr4 20223239 20223535 -164065127 - AluSc SINE Alu -11 298 1 2614 254 33 9 chr4 20223535 20224083 -164064579 + L1M4 LINE L1 4180 4762 -1384 845 149 144 45 chr4 20225030 20225231 -164063431 - ORSL DNA AcHobo -13 262 42 312 311 68 44 chr4 20225283 20225489 -164063173 + HAL1 LINE L1 825 1035 -1472 1225 106 80 73 chr4 20225532 20225807 -164062855 - Tigger7 DNA MER2_type 0 2487 2211 818 212 140 93 chr4 20225857 20226372 -164062290 - L1MC5 LINE L1 -728 7233 6695 2237 104 3 7 chr4 20226701 20226999 -164061663 + AluSg SINE Alu 1 297 -13 22 0 0 0 chr4 20227036 20227058 -164061604 + AT_rich Low_complexity Low_complexity 1 22 0 696 215 27 7 chr4 20227092 20227241 -164061421 + MLT1L LTR MaLR 41 192 -423 348 228 105 0 chr4 20227408 20227522 -164061140 + MLT1L LTR MaLR 418 543 -72 355 299 137 0 chr4 20227906 20228023 -164060639 + MER5B DNA MER1_type 1 133 -45 1231 291 87 6 chr4 20228731 20229216 -164059446 - MLT1H LTR MaLR -15 534 11 264 373 0 0 chr4 20229246 20229321 -164059341 + MER91 DNA MER1_type 1 75 -65 * 268 260 117 0 chr4 20229308 20229385 -164059277 - L3 LINE CR1 -250 1327 1242 429 109 0 0 chr4 20229394 20229458 -164059204 + (CA)n Simple_repeat Simple_repeat 2 65 0 276 350 29 0 chr4 20231186 20231289 -164057373 + MIR3 SINE MIR 55 160 -48 1879 152 72 26 chr4 20231361 20231709 -164056953 + THE1B LTR MaLR 1 364 0 966 261 66 3 chr4 20231853 20232217 -164056445 + MER113 DNA MER1_type? 135 521 0 448 344 112 6 chr4 20232257 20232588 -164056074 - L3b LINE CR1 -110 1473 1108 830 240 11 6 chr4 20232846 20233025 -164055637 + MER5A DNA MER1_type 3 182 -7 263 324 64 6 chr4 20233220 20233393 -164055269 + Charlie8 DNA MER1_type 278 460 -1957 280 302 23 0 chr4 20233767 20233853 -164054809 + MIR SINE MIR 163 250 -12 182 321 24 24 chr4 20235049 20235133 -164053529 + MIR SINE MIR 19 102 -106 231 366 38 15 chr4 20235460 20235591 -164053071 + L2 LINE L2 2862 2995 -277 1311 223 52 52 chr4 20235717 20236102 -164052560 + MLT1B LTR MaLR 1 385 -5 2199 112 0 0 chr4 20236242 20236536 -164052126 + AluSg SINE Alu 1 294 -16 297 282 0 24 chr4 20236963 20237048 -164051614 + L2 LINE L2 3227 3309 -4 490 204 128 76 chr4 20237192 20237560 -164051102 - MLT1C LTR MaLR -3 387 6 1012 44 0 22 chr4 20237844 20237981 -164050681 - L1PA4 LINE L1 0 6155 6022 317 283 167 45 chr4 20238036 20238594 -164050068 + L1ME4a LINE L1 5482 6107 -14 367 243 76 97 chr4 20239244 20239388 -164049274 - MIR3 SINE MIR -50 158 18 2601 58 0 0 chr4 20239425 20239736 -164048926 + AluY SINE Alu 1 311 0 6206 136 63 24 chr4 20239783 20240692 -164047970 - Tigger3b DNA MER2_type -1798 1230 263 2532 57 0 0 chr4 20240692 20240989 -164047673 + AluY SINE Alu 1 297 -14 6206 136 63 24 chr4 20240989 20241259 -164047403 - Tigger3b DNA MER2_type -2765 263 5 215 211 70 42 chr4 20242139 20242210 -164046452 - MIR3 SINE MIR -6 202 130 249 284 47 71 chr4 20243758 20243821 -164044841 + L2 LINE L2 3189 3249 -64 1960 166 31 8 chr4 20243821 20244176 -164044486 + MLT1A1 LTR MaLR 3 365 0 249 284 47 71 chr4 20244176 20244239 -164044423 + L2 LINE L2 3249 3312 -1 493 295 44 13 chr4 20244580 20244848 -164043814 + L2 LINE L2 2782 3049 -223 390 239 268 7 chr4 20244962 20245104 -164043558 - MIR SINE MIR 0 262 84 285 29 0 0 chr4 20245414 20245448 -164043214 + (CAA)n Simple_repeat Simple_repeat 2 35 0 377 290 91 8 chr4 20246568 20246707 -164041955 - MIR3 SINE MIR -63 145 15 297 299 93 0 chr4 20246848 20246945 -164041717 - MIR SINE MIR -53 209 104 198 0 0 0 chr4 20247310 20247332 -164041330 + (TA)n Simple_repeat Simple_repeat 2 23 0 208 255 0 0 chr4 20247637 20247684 -164040978 - L2 LINE L2 -68 3204 3158 2132 99 0 0 chr4 20247745 20248049 -164040613 - AluY SINE Alu 0 304 1 219 105 53 0 chr4 20248633 20248671 -164039991 + A-rich Low_complexity Low_complexity 3 42 0 1117 174 38 5 chr4 20249982 20250194 -164038468 - MER20 DNA MER1_type 0 219 1 315 169 84 14 chr4 20250568 20250639 -164038023 - MIR SINE MIR -121 141 66 186 43 0 0 chr4 20251456 20251479 -164037183 + (GA)n Simple_repeat Simple_repeat 2 24 0 584 241 64 32 chr4 20254343 20254530 -164034132 - L2 LINE L2 -4 3309 3117 243 299 75 9 chr4 20255034 20255141 -164033521 + MLT1K LTR MaLR 32 145 -443 240 217 54 33 chr4 20255278 20255370 -164033292 + MLT1L LTR MaLR 193 286 -329 227 241 0 0 chr4 20255592 20255646 -164033016 + MIR SINE MIR 209 262 0 * 545 236 19 0 chr4 20255643 20255749 -164032913 - L2 LINE L2 -1 3271 3164 368 292 161 18 chr4 20255985 20256153 -164032509 + MIR SINE MIR 1 192 -70 328 255 21 48 chr4 20256647 20256792 -164031870 + LTR67 LTR ERVL 412 552 -5 14134 175 59 18 chr4 20257538 20264126 -164024536 + L1PB3 LINE L1 6 6870 0 542 189 9 0 chr4 20264148 20264254 -164024408 - MER7A DNA MER2_type -241 105 1 473 301 68 0 chr4 20264371 20264547 -164024115 + MER117 DNA MER1_type 10 197 0 212 292 15 0 chr4 20264547 20264612 -164024050 - MIR3 SINE MIR -48 160 95 214 323 111 10 chr4 20264636 20264735 -164023927 - L3 LINE CR1 -357 1220 1112 225 282 201 40 chr4 20264739 20264888 -164023774 + MIR SINE MIR 3 175 -87 467 241 95 9 chr4 20264896 20265012 -164023650 - L2 LINE L2 0 3313 3188 289 393 0 9 chr4 20266407 20266519 -164022143 - MIR SINE MIR -62 146 36 577 247 119 46 chr4 20266951 20267145 -164021517 - MIR SINE MIR -12 250 43 407 294 44 44 chr4 20267255 20267503 -164021159 + L1ME4a LINE L1 3063 3310 -2836 319 268 124 45 chr4 20267759 20268024 -164020638 + L1ME4a LINE L1 4148 4433 -1713 472 285 29 24 chr4 20268140 20268347 -164020315 + LTR16B LTR ERVL 106 313 -151 288 267 30 15 chr4 20268839 20268974 -164019688 - MER65B LTR ERV1 -394 137 1 620 224 58 54 chr4 20269075 20269280 -164019382 + L2 LINE L2 3108 3313 0 28 48 0 0 chr4 20269342 20269384 -164019278 + AT_rich Low_complexity Low_complexity 1 42 0 371 190 134 35 chr4 20269589 20269731 -164018931 + L1ME4a LINE L1 5316 5471 -2337 301 273 76 15 chr4 20269902 20270100 -164018562 + L1ME4a LINE L1 5650 5859 -262 279 234 90 62 chr4 20270295 20270440 -164018222 - MLT1I LTR MaLR -191 218 70 263 195 26 80 chr4 20270659 20270714 -164017948 + L1ME4a LINE L1 6010 6058 -63 2247 99 0 23 chr4 20270714 20271016 -164017646 - AluSq SINE Alu -18 295 1 263 195 26 80 chr4 20271016 20271073 -164017589 + L1ME4a LINE L1 6058 6116 -5 468 271 35 106 chr4 20272491 20272732 -164015930 + MLT1I LTR MaLR 57 263 -146 2061 108 74 37 chr4 20272732 20273083 -164015579 - THE1B LTR MaLR 0 364 1 468 271 35 106 chr4 20273083 20273218 -164015444 + MLT1I LTR MaLR 263 406 -3 536 348 12 43 chr4 20273492 20273748 -164014914 + MIR SINE MIR 13 260 -2 378 301 102 93 chr4 20274120 20274562 -164014100 + L2 LINE L2 2827 3272 0 439 239 162 48 chr4 20274782 20274949 -164013713 + MER5A DNA MER1_type 4 189 0 281 330 35 0 chr4 20274964 20275079 -164013583 + MIR SINE MIR 102 220 -42 383 239 0 11 chr4 20276142 20276234 -164012428 + MER39 LTR ERV1 1 91 -616 1901 166 58 37 chr4 20276244 20276763 -164011899 - MLT2A2 LTR ERVL -1 553 1 1323 203 89 12 chr4 20276812 20277138 -164011524 + MER39 LTR ERV1 357 707 0 209 268 0 36 chr4 20277147 20277203 -164011459 + CT-rich Low_complexity Low_complexity 2 55 0 507 270 109 49 chr4 20278542 20278798 -164009864 - MIR SINE MIR 0 262 3 409 405 75 15 chr4 20279155 20279806 -164008856 + L2 LINE L2 418 1107 -2207 414 0 0 0 chr4 20280345 20280391 -164008271 + (TG)n Simple_repeat Simple_repeat 2 47 0 1934 162 0 19 chr4 20280852 20281160 -164007502 - AluJo SINE Alu -10 302 1 4295 74 18 6 chr4 20281322 20282342 -164006320 - MER11A LTR ERVK 0 1266 1 970 301 39 9 chr4 20282614 20282946 -164005716 + LTR16C LTR ERVL 150 491 0 1757 236 83 51 chr4 20283506 20284778 -164003884 - L1M3c LINE L1 -4787 2311 1 486 233 113 27 chr4 20284806 20284956 -164003706 + L2 LINE L2 3151 3313 0 1477 233 55 19 chr4 20285512 20285945 -164002717 + LTR40b LTR ERVL 14 462 0 470 356 42 9 chr4 20286007 20286223 -164002439 + L3 LINE CR1 1140 1362 -215 225 368 82 35 chr4 20286326 20286497 -164002165 + L3 LINE CR1 1388 1566 -11 206 343 30 0 chr4 20286732 20286799 -164001863 - L2 LINE L2 0 3313 3245 290 258 102 16 chr4 20287173 20287301 -164001361 - L2 LINE L2 -609 2705 2567 1719 176 15 43 chr4 20288454 20288846 -163999816 + MLT1B LTR MaLR 1 381 -9 1732 278 100 2 chr4 20289890 20290760 -163997902 - L2 LINE L2 -129 3184 2224 2741 229 89 50 chr4 20290763 20291074 -163997588 + HAL1b LINE L1 149 446 -902 2170 125 3 0 chr4 20291074 20291371 -163997291 - AluY SINE Alu -13 298 1 2741 229 89 50 chr4 20291371 20292214 -163996448 + HAL1b LINE L1 446 1348 0 23 0 0 0 chr4 20292214 20292237 -163996425 + AT_rich Low_complexity Low_complexity 1 23 0 356 318 34 47 chr4 20292502 20292523 -163996139 - MIR SINE MIR -98 164 144 3191 177 3 51 chr4 20292523 20293156 -163995506 + MER77 LTR ERV1 1 603 -2 356 318 34 47 chr4 20293156 20293282 -163995380 - MIR SINE MIR -118 144 19 360 281 10 0 chr4 20293883 20293979 -163994683 - MER81 DNA DNA 0 114 18 402 239 189 57 chr4 20294015 20294174 -163994488 - MER5A DNA MER1_type -1 188 9 304 386 83 0 chr4 20294225 20294357 -163994305 + L2 LINE L2 3111 3253 -19 335 262 98 33 chr4 20294828 20294950 -163993712 - MIR SINE MIR -63 145 16 269 250 0 15 chr4 20295818 20295886 -163992776 + GA-rich Low_complexity Low_complexity 4 70 0 244 237 0 42 chr4 20296367 20296485 -163992177 + (CATATA)n Simple_repeat Simple_repeat 5 117 0 325 316 68 0 chr4 20296739 20296856 -163991806 - L1MC4a LINE L1 -1919 5889 5765 375 254 134 15 chr4 20296902 20297036 -163991626 - L1MC4a LINE L1 -460 5661 5512 327 281 103 38 chr4 20297212 20297330 -163991332 - L1ME4a LINE L1 -89 6032 5896 273 119 0 0 chr4 20297330 20297372 -163991290 + (CA)n Simple_repeat Simple_repeat 2 43 0 327 281 103 38 chr4 20297372 20297438 -163991224 - L1ME4a LINE L1 -225 5896 5836 557 257 70 23 chr4 20297944 20298115 -163990547 + MLT1J2 LTR MaLR 272 450 0 1950 105 40 11 chr4 20298124 20298400 -163990262 + AluSg SINE Alu 1 284 -26 30 0 0 0 chr4 20298400 20298430 -163990232 + AT_rich Low_complexity Low_complexity 1 30 0 303 245 21 43 chr4 20298430 20298524 -163990138 + L1MC4 LINE L1 6612 6703 -1339 282 352 37 0 chr4 20298719 20298827 -163989835 - MIR SINE MIR -63 145 34 429 276 141 6 chr4 20298829 20298999 -163989663 + MIR SINE MIR 1 193 -69 797 239 66 36 chr4 20299002 20299303 -163989359 - MER2 DNA MER2_type -1 344 35 293 368 35 35 chr4 20299418 20299562 -163989100 - L2 LINE L2 -5 3267 3124 1034 186 5 5 chr4 20299863 20300051 -163988611 - MER5A DNA MER1_type -1 188 1 449 268 39 24 chr4 20300059 20300186 -163988476 - MER5B DNA MER1_type 0 178 50 9716 214 22 14 chr4 20300198 20304170 -163984492 - L1MD3 LINE L1 -2 7993 2326 1729 144 4 4 chr4 20304172 20304464 -163984198 - AluSx SINE Alu 0 309 18 1255 93 5 93 chr4 20304564 20304769 -163983893 + AluSg/x SINE Alu 105 291 -21 1305 252 27 6 chr4 20304885 20305222 -163983440 + L1ME1 LINE L1 5479 5822 -344 373 0 0 0 chr4 20305223 20305264 -163983398 + L1PA7 LINE L1 6099 6139 -15 21 0 0 0 chr4 20305882 20305903 -163982759 + AT_rich Low_complexity Low_complexity 1 21 0 1226 190 41 66 chr4 20305903 20306267 -163982395 + L1ME1 LINE L1 5810 6164 -2 2199 129 0 53 chr4 20306432 20306554 -163982108 + L1PA13 LINE L1 5750 5877 -286 2481 88 0 0 chr4 20306554 20306859 -163981803 - AluY SINE Alu -6 305 1 2199 129 0 53 chr4 20306859 20307147 -163981515 + L1PA13 LINE L1 5877 6138 -25 243 305 55 37 chr4 20307190 20307354 -163981308 - L2 LINE L2 -145 3168 3002 389 354 23 19 chr4 20307959 20308174 -163980488 + L3b LINE CR1 1236 1451 -132 187 308 0 0 chr4 20308249 20308288 -163980374 + L2 LINE L2 3245 3283 -30 740 234 196 26 chr4 20308484 20308796 -163979866 - MLT1H LTR MaLR -147 402 38 1009 152 217 68 chr4 20308803 20309020 -163979642 - MLT2B2 LTR ERVL -11 504 321 2191 112 3 7 chr4 20309020 20309315 -163979347 + AluSx SINE Alu 5 298 -14 1009 152 217 68 chr4 20309315 20309420 -163979242 - MLT2B2 LTR ERVL -194 321 134 1996 85 0 0 chr4 20309520 20309766 -163978896 + AluSc SINE Alu 40 285 -24 508 242 157 0 chr4 20310017 20310170 -163978492 + L2 LINE L2 3137 3313 0 272 260 26 0 chr4 20310772 20310849 -163977813 + MER5A DNA MER1_type 31 109 -80 226 270 29 88 chr4 20311226 20311363 -163977299 + MLT1H LTR MaLR 420 548 -1 374 321 99 11 chr4 20312101 20312270 -163976392 + MIR3 SINE MIR 3 177 -41 455 194 19 103 chr4 20312312 20312467 -163976195 - MIR SINE MIR -21 241 100 219 226 32 0 chr4 20312608 20312670 -163975992 + A-rich Low_complexity Low_complexity 4 67 0 2020 197 7 17 chr4 20312940 20313351 -163975311 - MLT2D LTR ERVL 0 414 8 232 300 44 33 chr4 20314052 20314142 -163974520 - MIR SINE MIR -143 119 29 243 292 26 56 chr4 20314334 20314529 -163974133 + L1ME1 LINE L1 5630 5818 -303 25 0 0 0 chr4 20314624 20314649 -163974013 + AT_rich Low_complexity Low_complexity 1 25 0 1918 163 3 3 chr4 20314649 20314943 -163973719 - AluSx SINE Alu -18 294 1 1779 198 40 6 chr4 20315009 20315362 -163973300 + MLT1A1 LTR MaLR 1 365 0 398 262 35 7 chr4 20315476 20315621 -163973041 + L1ME1 LINE L1 6013 6161 -5 202 233 23 0 chr4 20315638 20315681 -163972981 - MER5B DNA MER1_type -134 44 1 189 0 0 0 chr4 20315988 20316009 -163972653 + (A)n Simple_repeat Simple_repeat 1 21 0 2454 109 0 0 chr4 20316731 20317043 -163971619 + AluSx SINE Alu 1 312 0 258 220 296 45 chr4 20317103 20317235 -163971427 - MIR SINE MIR -96 166 2 327 324 0 9 chr4 20317808 20317916 -163970746 + MIR SINE MIR 37 143 -65 258 160 0 0 chr4 20318517 20318567 -163970095 + T-rich Low_complexity Low_complexity 1 50 0 2120 119 44 33 chr4 20319009 20319369 -163969293 - THE1B LTR MaLR 0 364 1 567 297 61 40 chr4 20320328 20320655 -163968007 + MER102b DNA MER1_type 5 338 -3 406 122 0 14 chr4 20320702 20320776 -163967886 + MER53 DNA DNA 117 189 0 1682 201 201 25 chr4 20320779 20321335 -163967327 + MLT1E1 LTR MaLR 1 654 0 2147 121 7 0 chr4 20321393 20321691 -163966971 - AluSx SINE Alu -1 311 12 981 240 128 44 chr4 20322160 20322632 -163966030 - MLT1G1 LTR MaLR -2 553 7 313 152 0 0 chr4 20322814 20322883 -163965779 - MSTD LTR MaLR -6 451 329 399 291 44 39 chr4 20323127 20323330 -163965332 - L1ME LINE L1 -688 5474 5271 1002 73 8 0 chr4 20323332 20323456 -163965206 - AluSc SINE Alu -184 125 1 348 304 9 0 chr4 20323476 20323588 -163965074 - L1ME LINE L1 -870 5276 5164 2411 81 0 7 chr4 20324234 20324542 -163964120 - AluY SINE Alu -5 306 1 247 375 88 6 chr4 20324972 20325132 -163963530 - MIR SINE MIR -68 194 22 2070 125 20 3 chr4 20325843 20326147 -163962515 + AluSx SINE Alu 1 309 -3 314 322 17 8 chr4 20326294 20326412 -163962250 - L2 LINE L2 -224 3048 2930 357 355 59 15 chr4 20327033 20327236 -163961426 + HAL1b LINE L1 587 798 -550 26 30 0 0 chr4 20327504 20327537 -163961125 + AT_rich Low_complexity Low_complexity 1 33 0 2289 92 0 23 chr4 20327546 20327850 -163960812 + AluSx SINE Alu 1 297 -15 1208 216 87 26 chr4 20327852 20328314 -163960348 - MER69 DNA AcHobo -100 2426 1937 1568 244 117 61 chr4 20328320 20329087 -163959575 - MER69 DNA AcHobo -1454 1072 263 233 305 119 0 chr4 20329087 20329205 -163959457 - LTR16A LTR ERVL 0 450 319 901 231 65 8 chr4 20329465 20329712 -163958950 - MER69 DNA AcHobo -2259 267 7 310 310 89 9 chr4 20329752 20330167 -163958495 + L1MC4a LINE L1 3526 3979 -2167 931 278 98 49 chr4 20330272 20331591 -163957071 + L1MC4a LINE L1 4602 5399 -747 787 250 141 21 chr4 20331786 20332023 -163956639 - L2 LINE L2 -34 3279 3072 1864 138 67 25 chr4 20332023 20332379 -163956283 + THE1C LTR MaLR 1 371 -4 787 250 141 21 chr4 20332379 20332581 -163956081 - L2 LINE L2 -241 3072 2782 580 297 126 5 chr4 20333387 20333609 -163955053 + L3 LINE CR1 1329 1577 0 515 280 207 4 chr4 20333820 20334052 -163954610 - LTR16A1 LTR ERVL 0 457 179 312 110 0 21 chr4 20334408 20334470 -163954192 - MLT2C2 LTR ERVL 0 464 419 225 140 53 0 chr4 20334509 20334566 -163954096 + (TA)n Simple_repeat Simple_repeat 2 61 0 1931 133 52 5 chr4 20334580 20334925 -163953737 - MLT2C1 LTR ERVL -41 479 3 1096 236 68 96 chr4 20335974 20336431 -163952231 - MLT1H LTR MaLR -103 446 3 692 122 0 9 chr4 20336657 20336772 -163951890 + (TCCCC)n Simple_repeat Simple_repeat 4 117 0 540 287 24 12 chr4 20338322 20338489 -163950173 - MIR SINE MIR -74 188 20 328 316 89 54 chr4 20339330 20339498 -163949164 - MER91A DNA MER1_type -22 174 1 240 283 0 0 chr4 20339632 20339685 -163948977 + L2 LINE L2 3220 3272 0 205 343 61 10 chr4 20340246 20340345 -163948317 + L2 LINE L2 2601 2704 -610 1187 297 94 35 chr4 20340787 20341278 -163947384 + LTR33 LTR ERVL 2 521 0 319 243 168 19 chr4 20341349 20341456 -163947206 + MIR SINE MIR 9 131 -131 189 0 0 0 chr4 20341468 20341489 -163947173 + (TAA)n Simple_repeat Simple_repeat 2 22 0 692 265 66 70 chr4 20341571 20341873 -163946789 + MER77 LTR ERV1 42 342 -263 559 222 58 34 chr4 20341903 20342076 -163946586 + MER77 LTR ERV1 408 601 -4 379 203 0 0 chr4 20342661 20342725 -163945937 + MER81 DNA DNA 2 65 -49 6637 91 7 2 chr4 20342750 20343950 -163944712 - L1PB1 LINE L1 0 6151 4970 476 205 0 0 chr4 20343975 20344058 -163944604 + MER81 DNA DNA 32 114 0 625 149 0 0 chr4 20344989 20345096 -163943566 - L1MA3 LINE L1 -1 6304 6198 195 321 146 0 chr4 20345137 20345274 -163943388 - MIR SINE MIR -13 249 93 2382 136 19 21 chr4 20345582 20345958 -163942704 + THE1C LTR MaLR 1 375 0 247 297 14 14 chr4 20345987 20346061 -163942601 - MIR SINE MIR -87 121 48 247 228 165 38 chr4 20346536 20346615 -163942047 + L2 LINE L2 3225 3313 0 285 266 173 22 chr4 20347986 20348125 -163940537 + MLT2E LTR ERVL 36 195 -433 184 349 0 30 chr4 20348380 20348446 -163940216 - MIR3 SINE MIR -3 205 142 355 247 93 10 chr4 20348735 20348832 -163939830 - MIR SINE MIR -62 146 42 1063 166 102 39 chr4 20348844 20349049 -163939613 - MER20 DNA MER1_type -1 218 1 332 288 118 20 chr4 20349311 20349464 -163939198 - MIR SINE MIR -1 261 94 265 393 53 0 chr4 20350077 20350227 -163938435 + MIR SINE MIR 35 192 -70 744 210 135 89 chr4 20350514 20350754 -163937908 + MLT1E LTR MaLR 1 288 -305 355 279 27 36 chr4 20351069 20351180 -163937482 - MIR SINE MIR -62 146 37 189 291 0 0 chr4 20351997 20352052 -163936610 - MIR3 SINE MIR -3 205 151 262 258 10 52 chr4 20352124 20352221 -163936441 + MER117 DNA MER1_type 98 190 -7 212 275 25 38 chr4 20352245 20352325 -163936337 - MIR SINE MIR -68 140 62 221 167 24 0 chr4 20352373 20352415 -163936247 - L2 LINE L2 0 3313 3271 708 239 144 18 chr4 20352602 20352824 -163935838 + MIR SINE MIR 12 261 -1 276 259 0 0 chr4 20352832 20352890 -163935772 - MIR SINE MIR -73 189 132 * 348 264 259 0 chr4 20352886 20353060 -163935602 + MIR SINE MIR 34 252 -10 297 135 0 0 chr4 20353062 20353114 -163935548 + (CAT)n Simple_repeat Simple_repeat 3 54 0 324 315 69 65 chr4 20353169 20353649 -163935013 + L2 LINE L2 2255 2736 -578 272 287 90 30 chr4 20353767 20353934 -163934728 + L2 LINE L2 2842 3018 -254 645 223 133 9 chr4 20354557 20354768 -163933894 - Charlie4a DNA MER1_type -4 504 268 13676 117 40 88 chr4 20354771 20354891 -163933771 + Tigger1 DNA MER2_type 1 125 -2293 2186 132 3 0 chr4 20354891 20355201 -163933461 + AluSx SINE Alu 2 312 0 13676 117 40 88 chr4 20355201 20356680 -163931982 + Tigger1 DNA MER2_type 125 1672 -746 2098 108 11 0 chr4 20356680 20356957 -163931705 + AluSp SINE Alu 1 280 -33 13676 117 40 88 chr4 20356957 20357702 -163930960 + Tigger1 DNA MER2_type 1672 2220 -198 1760 194 0 0 chr4 20357702 20357996 -163930666 - AluJo SINE Alu -18 294 1 13676 117 40 88 chr4 20357996 20358186 -163930476 + Tigger1 DNA MER2_type 2220 2417 -1 317 193 23 11 chr4 20358243 20358331 -163930331 - Charlie4a DNA MER1_type -350 158 70 561 298 69 0 chr4 20358554 20358742 -163929920 - MIR SINE MIR -14 248 48 2058 127 13 3 chr4 20358747 20359046 -163929616 + AluSc SINE Alu 1 302 -7 255 31 0 0 chr4 20359084 20359116 -163929546 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 3492 191 33 2 chr4 20359174 20359807 -163928855 + MER82 DNA MER2_type 1 653 0 605 279 73 5 chr4 20359948 20360152 -163928510 + L2 LINE L2 3095 3312 -1 1668 192 24 17 chr4 20360922 20361209 -163927453 - AluJb SINE Alu -23 289 1 522 171 23 31 chr4 20361386 20361515 -163927147 + L1MC5 LINE L1 7804 7931 -30 985 157 92 5 chr4 20362897 20363082 -163925580 + L1PB1 LINE L1 5951 6151 0 2498 77 0 3 chr4 20363092 20363404 -163925258 + AluY SINE Alu 1 311 0 294 235 30 83 chr4 20364053 20364157 -163924505 + LTR33 LTR ERVL 64 161 -362 1774 157 88 26 chr4 20364157 20364508 -163924154 + THE1C LTR MaLR 1 373 -2 294 235 30 83 chr4 20364508 20364535 -163924127 + LTR33 LTR ERVL 161 188 -335 292 250 139 0 chr4 20364625 20364733 -163923929 + LTR33 LTR ERVL 332 454 -67 28 48 0 0 chr4 20365433 20365475 -163923187 + AT_rich Low_complexity Low_complexity 1 42 0 230 348 59 8 chr4 20366416 20366534 -163922128 + L2 LINE L2 2913 3036 -236 290 339 101 0 chr4 20366781 20366890 -163921772 + L2 LINE L2 3137 3256 -16 2298 94 0 3 chr4 20367041 20367338 -163921324 - AluSx SINE Alu -7 305 10 254 304 126 39 chr4 20367340 20367649 -163921013 - L2 LINE L2 -157 3156 2821 555 265 135 39 chr4 20368251 20368600 -163920062 - MLT1J2 LTR MaLR 0 450 6 182 263 0 0 chr4 20369044 20369082 -163919580 - L2 LINE L2 -31 3241 3204 183 129 0 0 chr4 20369084 20369115 -163919547 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 314 135 19 0 chr4 20369297 20369349 -163919313 - Charlie1 DNA MER1_type -2 2759 2707 998 205 82 34 chr4 20369349 20369777 -163918885 + L1MC/D LINE L1 5051 5502 -740 1644 186 3 17 chr4 20369778 20370069 -163918593 + AluJb SINE Alu 1 287 -25 2325 61 11 0 chr4 20370073 20370373 -163918289 + AluY SINE Alu 1 303 0 4236 204 70 6 chr4 20370425 20371938 -163916724 + L1MD1 LINE L1 4639 6242 0 570 224 82 66 chr4 20371946 20372250 -163916412 + L1ME3 LINE L1 1335 1643 -4753 252 305 12 0 chr4 20372272 20372354 -163916308 + MLT1E1 LTR MaLR 1 83 -571 524 241 9 0 chr4 20372456 20372564 -163916098 + MLT1E1 LTR MaLR 53 161 -432 202 328 0 0 chr4 20372564 20372625 -163916037 + (TA)n Simple_repeat Simple_repeat 2 62 0 263 27 0 27 chr4 20372635 20372672 -163915990 + (TC)n Simple_repeat Simple_repeat 1 36 0 1068 222 72 55 chr4 20372684 20372977 -163915685 + MLT1E1 LTR MaLR 305 602 -52 366 178 27 0 chr4 20372997 20373070 -163915592 + MLT1E LTR MaLR 519 593 0 1985 109 0 8 chr4 20373117 20373382 -163915280 + AluSx SINE Alu 39 301 -11 5683 245 75 47 chr4 20373415 20375458 -163913204 + L1ME3 LINE L1 2805 4928 -1287 1417 181 35 48 chr4 20375458 20375772 -163912890 - AluJb SINE Alu 0 312 3 5683 245 75 47 chr4 20375772 20376138 -163912524 + L1ME3 LINE L1 4928 5282 -933 232 175 0 53 chr4 20376143 20376200 -163912462 + LTR66 LTR ERVL 386 439 -171 309 276 23 0 chr4 20376230 20376317 -163912345 - L1MC4 LINE L1 -1339 6703 6615 244 196 0 0 chr4 20376330 20376375 -163912287 - LTR66 LTR ERVL -171 439 395 1709 180 52 0 chr4 20376375 20376680 -163911982 + MER2 DNA MER2_type 1 321 -24 1895 211 111 33 chr4 20376684 20377303 -163911359 + L1ME3 LINE L1 5293 5978 -253 306 0 0 0 chr4 20377303 20377337 -163911325 + (CA)n Simple_repeat Simple_repeat 2 35 0 1895 211 111 33 chr4 20377337 20377417 -163911245 + L1ME3 LINE L1 5978 6050 -181 318 210 0 0 chr4 20377418 20377480 -163911182 + L1ME3 LINE L1 6169 6230 -1 843 256 129 67 chr4 20377557 20378123 -163910539 - Charlie7 DNA MER1_type -1934 678 78 256 270 95 14 chr4 20378199 20378273 -163910389 + L2 LINE L2 2997 3076 -196 650 271 128 12 chr4 20378351 20378672 -163909990 - L2 LINE L2 -6 3307 2950 322 322 31 78 chr4 20378711 20378966 -163909696 - L2 LINE L2 -756 2558 2316 501 240 184 28 chr4 20379045 20379295 -163909367 + MLT1H LTR MaLR 55 343 -206 1622 217 41 49 chr4 20380366 20380890 -163907772 + MER39 LTR ERV1 4 707 0 372 322 26 9 chr4 20381173 20381288 -163907374 - MIR SINE MIR -127 135 19 697 157 0 0 chr4 20381327 20381459 -163907203 + AluSg/x SINE Alu 181 312 0 992 234 33 71 chr4 20381588 20381955 -163906707 - MER39 LTR ERV1 -98 609 257 2743 116 8 3 chr4 20381956 20382318 -163906344 + THE1B LTR MaLR 1 364 0 233 233 0 0 chr4 20382348 20382391 -163906271 - MER39 LTR ERV1 -661 46 4 186 235 0 0 chr4 20382942 20382976 -163905686 - L2 LINE L2 -31 3241 3208 326 276 94 8 chr4 20383120 20383247 -163905415 + MIR SINE MIR 55 192 -70 881 246 26 0 chr4 20383492 20383724 -163904938 - L1MD3 LINE L1 -10 7985 7748 239 260 39 0 chr4 20384111 20384188 -163904474 + MIR SINE MIR 183 262 0 492 244 65 36 chr4 20386541 20386709 -163901953 + MIR SINE MIR 33 205 -57 324 120 0 0 chr4 20386774 20386824 -163901838 + (GGAA)n Simple_repeat Simple_repeat 3 52 0 24 32 0 0 chr4 20386855 20386886 -163901776 + AT_rich Low_complexity Low_complexity 1 31 0 2073 108 42 0 chr4 20386895 20387181 -163901481 + AluSg SINE Alu 2 299 -11 3658 90 59 0 chr4 20387477 20387988 -163900674 + MER41A LTR ERV1 1 541 -13 3637 51 4 13 chr4 20387988 20388440 -163900222 + LTR7 LTR ERV1 1 448 -2 16701 102 16 19 chr4 20388442 20391324 -163897338 + HERVH LTR ERV1 1 2995 -4718 960 133 7 0 chr4 20391303 20391453 -163897209 + HERVH LTR ERV1 3140 3290 -4423 * 11426 88 27 40 chr4 20391443 20393122 -163895540 + HERVH LTR ERV1 3492 5149 -2564 1429 130 19 0 chr4 20393123 20393339 -163895323 + HERVH LTR ERV1 5600 5819 -1894 * 2493 84 45 13 chr4 20393337 20393717 -163894945 + HERVH LTR ERV1 7322 7713 0 3630 53 0 11 chr4 20393717 20394170 -163894492 + LTR7 LTR ERV1 1 448 -2 3164 146 52 2 chr4 20394318 20394852 -163893810 + MER34B LTR ERV1 5 565 0 607 288 80 9 chr4 20395411 20395623 -163893039 - MIR SINE MIR -34 228 2 2128 106 3 11 chr4 20395980 20396296 -163892366 + AluSg SINE Alu 1 314 0 327 49 0 0 chr4 20397122 20397163 -163891499 + (TG)n Simple_repeat Simple_repeat 2 42 0 318 286 27 45 chr4 20397269 20397381 -163891281 + LTR67 LTR ERVL 85 194 -363 470 244 43 49 chr4 20397739 20397903 -163890759 + L1MC/D LINE L1 5628 5790 -2018 246 333 39 45 chr4 20398036 20398192 -163890470 + MLT1K LTR MaLR 92 246 -342 321 326 60 30 chr4 20398308 20398541 -163890121 + MLT1K LTR MaLR 317 556 -32 2386 93 3 0 chr4 20398637 20398938 -163889724 - AluSc SINE Alu -7 302 1 2040 152 83 11 chr4 20399382 20399756 -163888906 + L1MA9 LINE L1 5907 6307 -5 180 26 53 26 chr4 20399966 20400004 -163888658 + (TTG)n Simple_repeat Simple_repeat 1 39 0 1823 123 0 4 chr4 20400004 20400265 -163888397 - AluSq SINE Alu -53 260 1 24 32 0 0 chr4 20400491 20400522 -163888140 + AT_rich Low_complexity Low_complexity 1 31 0 709 239 28 17 chr4 20401197 20401373 -163887289 - MER63A DNA MER1_type -5 205 28 217 108 27 0 chr4 20401396 20401433 -163887229 - MIR SINE MIR -117 145 108 2602 49 0 0 chr4 20401764 20402070 -163886592 + AluY SINE Alu 1 306 -5 22 0 0 0 chr4 20402866 20402888 -163885774 + AT_rich Low_complexity Low_complexity 1 22 0 36 0 0 0 chr4 20403351 20403387 -163885275 + AT_rich Low_complexity Low_complexity 1 36 0 2165 195 38 5 chr4 20403488 20403888 -163884774 + MLT2D LTR ERVL 2 414 0 327 308 129 8 chr4 20403956 20404127 -163884535 - MIR SINE MIR -56 152 3 1549 240 44 38 chr4 20404358 20404854 -163883808 - L1ME1 LINE L1 -5 6161 5663 322 204 130 74 chr4 20404895 20405003 -163883659 + MER58B DNA MER1_type 192 305 -36 3214 231 57 19 chr4 20405031 20406194 -163882468 - L1ME1 LINE L1 -521 5645 4439 792 206 33 5 chr4 20406246 20406430 -163882232 - MER96B DNA MER1_type? -223 194 6 556 213 137 11 chr4 20406435 20406618 -163882044 - L1ME1 LINE L1 -1728 4418 4213 * 3252 239 64 24 chr4 20406613 20406675 -163881987 - L1ME1 LINE L1 -2535 3611 3553 2264 101 3 0 chr4 20406675 20406971 -163881691 + AluSp SINE Alu 1 297 -16 3252 239 64 24 chr4 20406971 20408026 -163880636 - L1ME1 LINE L1 -2593 3553 2449 247 270 28 7 chr4 20408383 20408465 -163880197 + CT-rich Low_complexity Low_complexity 3 144 0 1810 143 58 3 chr4 20408942 20409236 -163879426 - AluJo SINE Alu -2 310 1 194 282 59 12 chr4 20409410 20409495 -163879167 - MIR3 SINE MIR -21 187 99 411 183 0 0 chr4 20409561 20409632 -163879030 - MER5A DNA MER1_type -88 101 31 264 326 23 23 chr4 20409817 20409946 -163878716 + L3 LINE CR1 1436 1564 -13 3015 90 44 23 chr4 20410041 20410429 -163878233 + MLT2A1 LTR ERVL 1 400 -44 524 91 11 0 chr4 20410429 20410517 -163878145 + (TAGA)n Simple_repeat Simple_repeat 4 92 0 3015 90 44 23 chr4 20410517 20410563 -163878099 + MLT2A1 LTR ERVL 400 444 0 2171 106 7 0 chr4 20411677 20411982 -163876680 + AluSx SINE Alu 1 307 0 332 273 109 16 chr4 20412012 20412140 -163876522 + MIR SINE MIR 49 188 -74 331 294 153 44 chr4 20412160 20412500 -163876162 + L1MCc LINE L1 19 395 -6028 2439 97 0 0 chr4 20412711 20413020 -163875642 - AluSx SINE Alu -3 309 1 227 185 93 0 chr4 20413261 20413315 -163875347 - MIR SINE MIR -118 144 86 2261 107 0 3 chr4 20413495 20413793 -163874869 - AluSx SINE Alu -15 297 1 4029 184 48 19 chr4 20413841 20414596 -163874066 - MER21B LTR ERV1 0 863 87 478 155 130 31 chr4 20414606 20414786 -163873876 - L1PA16 LINE L1 0 6166 5949 498 214 11 0 chr4 20414793 20414882 -163873780 - MER21B LTR ERV1 -773 90 1 662 336 82 11 chr4 20415373 20415897 -163872765 + L1ME4a LINE L1 5447 6007 -114 534 250 109 38 chr4 20416026 20416346 -163872316 - L1ME4a LINE L1 -54 6067 5725 811 277 74 53 chr4 20417112 20417545 -163871117 - L2 LINE L2 -1 3312 2871 1286 219 120 23 chr4 20418424 20418808 -163869854 + MLT1C LTR MaLR 6 426 -41 207 0 0 0 chr4 20419523 20419546 -163869116 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 232 302 70 0 chr4 20419803 20419889 -163868773 - MIR SINE MIR -118 144 53 2276 137 31 11 chr4 20420178 20420535 -163868127 - THE1B LTR MaLR 0 364 1 200 264 42 28 chr4 20420708 20420780 -163867882 - MER5A DNA MER1_type -35 154 82 2184 65 7 11 chr4 20421502 20421781 -163866881 + AluY SINE Alu 1 278 -33 226 0 59 0 chr4 20421781 20421815 -163866847 + (CAAAA)n Simple_repeat Simple_repeat 1 36 0 597 256 138 50 chr4 20423236 20423556 -163865106 - MER7A DNA MER2_type 0 346 1 329 278 56 28 chr4 20424583 20424691 -163863971 - L2 LINE L2 -23 3249 3139 2225 203 23 11 chr4 20424736 20425210 -163863452 + Charlie1b DNA MER1_type 1 480 -43 2846 226 67 73 chr4 20425215 20425393 -163863269 - L1MC4 LINE L1 -21 8021 7843 261 0 0 0 chr4 20425393 20425422 -163863240 + (TG)n Simple_repeat Simple_repeat 1 29 0 2846 226 67 73 chr4 20425422 20426097 -163862565 - L1MC4 LINE L1 -199 7843 7165 2786 10 0 13 chr4 20426097 20426465 -163862197 - AluYb8 SINE Alu 0 318 1 2454 58 0 0 chr4 20426467 20426759 -163861903 - AluY SINE Alu -19 292 1 1644 186 3 17 chr4 20426763 20427054 -163861608 - AluJb SINE Alu -25 287 1 2846 226 67 73 chr4 20427054 20427483 -163861179 - L1MC4 LINE L1 -881 7161 5051 314 135 19 0 chr4 20427483 20427535 -163861127 + Charlie1b DNA MER1_type 469 521 -2 203 152 0 0 chr4 20427715 20427748 -163860914 + CT-rich Low_complexity Low_complexity 2 34 0 182 263 0 0 chr4 20427750 20427788 -163860874 + L2 LINE L2 3204 3241 -31 484 232 10 0 chr4 20528743 20528842 -163759820 + L1MC4a LINE L1 6673 6772 -1036 776 227 135 5 chr4 20528842 20529027 -163759635 + MLT1A1 LTR MaLR 157 365 0 1633 209 55 10 chr4 20529027 20529425 -163759237 + L1MC3 LINE L1 7363 7778 -7 206 342 102 21 chr4 20529971 20530158 -163758504 - L2 LINE L2 -214 3058 2857 346 287 66 73 chr4 20530314 20530757 -163757905 + L1ME4a LINE L1 5382 5820 -301 884 205 88 86 chr4 20530757 20530840 -163757822 + MLT1B LTR MaLR 2 83 -307 2066 126 0 3 chr4 20530840 20531133 -163757529 - AluSx SINE Alu -20 292 1 884 205 88 86 chr4 20531133 20531435 -163757227 + MLT1B LTR MaLR 83 388 -2 346 287 66 73 chr4 20531435 20531720 -163756942 + L1ME4a LINE L1 5820 6105 -16 312 198 45 18 chr4 20532460 20532571 -163756091 + (TA)n Simple_repeat Simple_repeat 2 115 0 183 267 0 22 chr4 20532885 20532930 -163755732 - L3 LINE CR1 -929 648 605 228 254 0 0 chr4 20533111 20533170 -163755492 + (TAA)n Simple_repeat Simple_repeat 3 61 0 255 152 0 0 chr4 20533881 20533927 -163754735 + (CA)n Simple_repeat Simple_repeat 1 46 0 387 0 0 0 chr4 20534113 20534156 -163754506 + (CA)n Simple_repeat Simple_repeat 2 44 0 760 280 110 3 chr4 20534168 20534468 -163754194 + HAL1 LINE L1 1468 1799 -708 24 0 0 0 chr4 20534538 20534562 -163754100 + AT_rich Low_complexity Low_complexity 1 24 0 228 298 0 0 chr4 20534620 20534724 -163753938 + HAL1 LINE L1 2024 2127 -380 545 250 45 100 chr4 20534784 20534984 -163753678 + MER5A DNA MER1_type 1 189 0 251 214 29 0 chr4 20535325 20535395 -163753267 + Charlie8 DNA MER1_type 418 489 -1928 394 254 9 9 chr4 20535397 20535507 -163753155 + HAL1 LINE L1 1542 1651 -856 193 273 0 23 chr4 20536600 20536644 -163752018 - L2 LINE L2 -15 3298 3256 207 253 158 21 chr4 20537329 20537424 -163751238 - MIR SINE MIR -4 258 151 255 332 103 34 chr4 20537451 20537713 -163750949 - MLT1J1 LTR MaLR -53 393 114 197 259 111 0 chr4 20537855 20537909 -163750753 - MIR SINE MIR -119 143 84 978 198 62 5 chr4 20537955 20538147 -163750515 + MER58A DNA MER1_type 7 209 -15 1561 215 31 111 chr4 20538154 20538703 -163749959 - MLT1D LTR MaLR 0 505 1 2176 102 3 3 chr4 20538780 20539075 -163749587 + AluSx SINE Alu 1 295 -17 350 274 92 49 chr4 20540361 20540525 -163748137 - MIR SINE MIR -74 188 18 235 263 88 0 chr4 20541481 20541561 -163747101 - MLT1K LTR MaLR -131 457 371 181 111 0 0 chr4 20541622 20541649 -163747013 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1865 129 7 11 chr4 20541649 20541928 -163746734 - AluSq SINE Alu 0 338 34 395 292 90 7 chr4 20542174 20542318 -163746344 - MIR SINE MIR -10 252 97 303 93 0 0 chr4 20542589 20542632 -163746030 + (GA)n Simple_repeat Simple_repeat 2 44 0 1392 181 126 6 chr4 20542810 20543136 -163745526 - MLT1A1 LTR MaLR 0 365 1 1166 203 31 28 chr4 20543988 20544309 -163744353 + MLT1A1 LTR MaLR 10 331 -34 1834 114 29 7 chr4 20544314 20544622 -163744040 - L1MA3 LINE L1 0 6305 5991 820 146 0 0 chr4 20544622 20544766 -163743896 + L1MA3 LINE L1 5845 5988 -317 361 358 53 4 chr4 20545006 20545252 -163743410 - MER90 LTR ERV1 -70 544 287 245 373 73 0 chr4 20545982 20546092 -163742570 - L2 LINE L2 0 3272 3155 1850 124 118 24 chr4 20546208 20546539 -163742123 - THE1B LTR MaLR -2 362 1 282 299 81 0 chr4 20547114 20547201 -163741461 + MIR SINE MIR 55 148 -60 217 313 209 28 chr4 20547644 20547826 -163740836 - MIR SINE MIR 0 262 48 321 278 35 42 chr4 20547998 20548142 -163740520 + MLT1H1 LTR MaLR 64 206 -349 194 343 62 45 chr4 20548458 20548636 -163740026 - L2 LINE L2 -338 2976 2796 443 314 74 54 chr4 20549049 20549291 -163739371 - MIR SINE MIR -14 248 2 183 352 11 11 chr4 20549372 20549460 -163739202 - MER5A DNA MER1_type -95 94 7 337 121 15 15 chr4 20550454 20550520 -163738142 + CT-rich Low_complexity Low_complexity 3 68 0 221 217 17 50 chr4 20550746 20550806 -163737856 - L2 LINE L2 -2 3311 3254 248 274 57 24 chr4 20551029 20551153 -163737509 - MLT1K LTR MaLR -26 562 435 253 219 55 0 chr4 20551178 20551251 -163737411 + CT-rich Low_complexity Low_complexity 2 78 0 242 286 32 0 chr4 20551536 20551599 -163737063 - L2 LINE L2 -8 3305 3241 248 223 49 0 chr4 20551779 20551863 -163736799 - MIR3 SINE MIR -18 190 98 314 243 68 29 chr4 20552641 20552744 -163735918 + L1ME1 LINE L1 5087 5193 -953 183 100 0 0 chr4 20552790 20552820 -163735842 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 234 0 0 0 chr4 20552903 20552929 -163735733 + (A)n Simple_repeat Simple_repeat 1 26 0 338 312 43 66 chr4 20552944 20553245 -163735417 + L1ME1 LINE L1 5426 5722 -448 21 36 0 0 chr4 20553550 20553578 -163735084 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 20553637 20553658 -163735004 + AT_rich Low_complexity Low_complexity 1 21 0 651 286 11 0 chr4 20554076 20554261 -163734401 + MER5A DNA MER1_type 1 187 -2 227 154 39 39 chr4 20554264 20554316 -163734346 - L2 LINE L2 -526 2788 2737 967 189 9 48 chr4 20554466 20554693 -163733969 - MER20 DNA MER1_type 0 219 2 5265 124 11 21 chr4 20555040 20555697 -163732965 - L1PA15 LINE L1 -5 6160 5513 2480 139 61 5 chr4 20555697 20556108 -163732554 - MER61C LTR ERV1 0 434 1 5265 124 11 21 chr4 20556108 20556366 -163732296 - L1PA15 LINE L1 -652 5513 5254 1852 211 50 67 chr4 20556381 20556945 -163731717 - MLT2B3 LTR ERVL 0 554 1 8034 110 8 7 chr4 20556945 20558156 -163730506 - HERVL-B3 LTR ERVL 0 5654 4442 2275 169 23 80 chr4 20558159 20558761 -163729901 + LTR8 LTR ERV1 112 679 -12 323 338 59 15 chr4 20558804 20558940 -163729722 - MER5A DNA MER1_type -1 188 47 412 48 32 0 chr4 20560248 20560311 -163728351 + (TG)n Simple_repeat Simple_repeat 2 66 0 1799 188 29 9 chr4 20561061 20561401 -163727261 - MER7A DNA MER2_type -1 345 1 311 174 116 0 chr4 20562271 20562357 -163726305 + L1ME1 LINE L1 5791 5886 -280 41181 30 21 1 chr4 20562406 20568437 -163720225 + L1HS LINE L1 3 6155 0 414 39 0 0 chr4 20568439 20568491 -163720171 + (A)n Simple_repeat Simple_repeat 1 52 0 570 259 17 21 chr4 20568491 20568721 -163719941 + L1MA10 LINE L1 5955 6331 -3 206 329 49 12 chr4 20568869 20568951 -163719711 - L2 LINE L2 -1 3271 3187 22 70 0 0 chr4 20569051 20569094 -163719568 + AT_rich Low_complexity Low_complexity 1 43 0 213 225 14 14 chr4 20569101 20569172 -163719490 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 236 100 0 20 chr4 20569173 20569223 -163719439 + (TA)n Simple_repeat Simple_repeat 1 49 0 360 183 39 33 chr4 20569264 20569417 -163719245 + (TTATA)n Simple_repeat Simple_repeat 5 158 0 212 0 36 0 chr4 20570055 20570083 -163718579 + (TTG)n Simple_repeat Simple_repeat 2 30 0 288 209 20 20 chr4 20570814 20570964 -163717698 + CT-rich Low_complexity Low_complexity 1 150 0 206 304 14 0 chr4 20571336 20571405 -163717257 + (CATATA)n Simple_repeat Simple_repeat 3 72 0 2174 129 0 3 chr4 20573319 20573629 -163715033 - AluSx SINE Alu -3 309 1 196 336 196 7 chr4 20574037 20574180 -163714482 - MIR3 SINE MIR -6 202 33 252 329 0 0 chr4 20575201 20575286 -163713376 - Charlie1 DNA MER1_type -2635 126 42 699 164 16 0 chr4 20575750 20575872 -163712790 + AluSg/x SINE Alu 183 306 -6 1003 314 63 10 chr4 20575913 20576362 -163712300 - L2 LINE L2 -229 3084 2617 492 236 116 66 chr4 20576506 20576748 -163711914 + MLT1G3 LTR MaLR 156 409 -146 245 306 50 58 chr4 20576847 20577089 -163711573 - L2 LINE L2 -695 2619 2380 2064 141 33 25 chr4 20577089 20577450 -163711212 + THE1B LTR MaLR 1 364 0 21 36 0 0 chr4 20578751 20578779 -163709883 + AT_rich Low_complexity Low_complexity 1 28 0 724 300 40 0 chr4 20578823 20579046 -163709616 - MIR SINE MIR -28 234 3 618 221 0 51 chr4 20579196 20579379 -163709283 + L1MD2 LINE L1 5726 5896 -274 252 227 11 45 chr4 20579434 20579522 -163709140 + L1MD2 LINE L1 6038 6122 -237 29200 115 11 56 chr4 20579583 20582101 -163706561 - L1PA7 LINE L1 -11 6143 3515 2196 188 11 30 chr4 20582101 20582568 -163706094 + LTR22A LTR ERVK 1 458 0 29200 115 11 56 chr4 20582568 20586487 -163702175 - L1PA7 LINE L1 -2639 3515 3 324 212 92 115 chr4 20586509 20586726 -163701936 + MIR SINE MIR 47 258 -4 206 313 151 11 chr4 20587314 20587493 -163701169 - MIR SINE MIR -27 235 32 273 272 19 29 chr4 20587767 20587870 -163700792 + CT-rich Low_complexity Low_complexity 2 103 0 2022 171 0 3 chr4 20588272 20588629 -163700033 + MER46B DNA MER2_type 5 235 -1 295 50 0 0 chr4 20588814 20588854 -163699808 - tRNA-Pro-CCT tRNA tRNA -35 40 1 924 43 0 0 chr4 20588860 20588977 -163699685 + L1PA4 LINE L1 6036 6152 -3 228 389 62 35 chr4 20590818 20591075 -163697587 - L2 LINE L2 -205 3067 2804 743 86 35 9 chr4 20592056 20592075 -163696587 - L1PA5 LINE L1 0 6154 6137 213 57 0 29 chr4 20592075 20592110 -163696552 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 743 86 35 9 chr4 20592110 20592206 -163696456 - L1PA5 LINE L1 -17 6137 6036 1805 189 35 9 chr4 20592394 20592732 -163695930 - MLT1A1 LTR MaLR 0 365 19 305 211 37 37 chr4 20593389 20593550 -163695112 + (TA)n Simple_repeat Simple_repeat 2 162 0 322 335 108 7 chr4 20593734 20593949 -163694713 - MIR SINE MIR -17 245 17 194 326 0 0 chr4 20593933 20593982 -163694680 - L2 LINE L2 -14 3258 3210 * 198 103 0 0 chr4 20594578 20594607 -163694055 + (TTC)n Simple_repeat Simple_repeat 2 30 0 180 0 0 0 chr4 20595341 20595361 -163693301 + (TTG)n Simple_repeat Simple_repeat 2 21 0 367 361 18 12 chr4 20595586 20595752 -163692910 + MIR SINE MIR 2 168 -94 36 40 0 0 chr4 20596256 20596306 -163692356 + AT_rich Low_complexity Low_complexity 1 50 0 399 21 0 0 chr4 20597415 20597463 -163691199 + (TCTA)n Simple_repeat Simple_repeat 2 49 0 21 71 0 0 chr4 20597953 20597995 -163690667 + AT_rich Low_complexity Low_complexity 1 42 0 734 191 30 0 chr4 20598050 20598181 -163690481 + AluJo SINE Alu 1 135 -177 181 293 91 40 chr4 20598451 20598550 -163690112 + L2 LINE L2 3206 3309 -4 1323 98 0 0 chr4 20599398 20599617 -163689045 - AluY SINE Alu 0 311 127 403 247 40 20 chr4 20599953 20600103 -163688559 - MER103 DNA DNA -10 156 4 1804 75 0 16 chr4 20600418 20600670 -163687992 + L1PA13 LINE L1 5916 6163 0 636 311 48 12 chr4 20600944 20601192 -163687470 - LTR16C LTR ERVL -91 400 144 2359 62 10 23 chr4 20601312 20601616 -163687046 - AluY SINE Alu -11 300 1 42 20 0 0 chr4 20601712 20601761 -163686901 + AT_rich Low_complexity Low_complexity 1 49 0 298 294 104 50 chr4 20601792 20601993 -163686669 - L2 LINE L2 -17 3296 3085 687 303 56 25 chr4 20602007 20602330 -163686332 - L2 LINE L2 -684 2630 2298 29 0 0 0 chr4 20603042 20603071 -163685591 + AT_rich Low_complexity Low_complexity 1 29 0 2876 118 9 5 chr4 20603148 20603579 -163685083 - MER57B LTR ERV1 -1 433 1 1962 152 0 0 chr4 20603992 20604281 -163684381 + AluSx SINE Alu 11 299 -13 1810 235 85 66 chr4 20604381 20605029 -163683633 - MLT2F LTR ERVL -3 660 1 196 298 60 0 chr4 20605364 20605448 -163683214 - MIR SINE MIR -73 189 101 1766 157 3 11 chr4 20605649 20605963 -163682699 - AluSx SINE Alu 0 312 1 27 0 0 0 chr4 20606027 20606054 -163682608 + AT_rich Low_complexity Low_complexity 1 27 0 797 213 19 53 chr4 20606261 20606468 -163682194 + MLT2B1 LTR ERVL 1 200 -320 185 365 0 0 chr4 20606871 20606956 -163681706 - MIR SINE MIR -41 221 137 216 67 0 0 chr4 20608011 20608041 -163680621 + (TGG)n Simple_repeat Simple_repeat 3 32 0 477 311 107 6 chr4 20608440 20608617 -163680045 + MIR3 SINE MIR 8 202 -6 1476 198 33 63 chr4 20608767 20609166 -163679496 - MLT1B LTR MaLR -1 389 3 186 43 0 0 chr4 20609491 20609514 -163679148 + (A)n Simple_repeat Simple_repeat 1 23 0 1083 237 63 47 chr4 20609623 20609986 -163678676 - MLT1B LTR MaLR 0 390 22 542 315 33 6 chr4 20610706 20610887 -163677775 + MIR SINE MIR 13 198 -64 209 210 16 0 chr4 20610929 20610991 -163677671 + (CTA)n Simple_repeat Simple_repeat 1 63 0 470 238 191 0 chr4 20612921 20613068 -163675594 + MIR SINE MIR 88 262 0 566 189 14 81 chr4 20613467 20613615 -163675047 + MLT2A2 LTR ERVL 269 406 -47 715 303 149 20 chr4 20613731 20614173 -163674489 - LTR33 LTR ERVL -7 514 16 1693 149 64 10 chr4 20614315 20614610 -163674052 + AluSx SINE Alu 1 311 -1 411 217 57 74 chr4 20614751 20614926 -163673736 - Charlie7 DNA MER1_type -1 2611 2440 284 294 71 0 chr4 20615237 20615322 -163673340 - MIR SINE MIR -82 180 90 269 297 85 8 chr4 20615597 20615715 -163672947 + L2 LINE L2 3146 3272 0 24 67 0 0 chr4 20615761 20615806 -163672856 + AT_rich Low_complexity Low_complexity 1 45 0 1018 118 44 44 chr4 20617803 20617933 -163670729 - L1PA16 LINE L1 0 6166 6034 1292 150 87 113 chr4 20617933 20618393 -163670269 + LTR7 LTR ERV1 1 448 -2 1018 118 44 44 chr4 20618393 20618466 -163670196 - L1PA16 LINE L1 -131 6035 5963 672 208 198 43 chr4 20618816 20619023 -163669639 - MIR SINE MIR 0 262 24 277 322 67 61 chr4 20620254 20620434 -163668228 + MIR SINE MIR 13 193 -69 * 506 287 11 80 chr4 20620424 20620612 -163668050 + MER5A DNA MER1_type 9 183 -6 1907 123 4 0 chr4 20622053 20622321 -163666341 - AluSc SINE Alu -40 269 1 1840 153 3 34 chr4 20622321 20622647 -163666015 - Tigger1 DNA MER2_type -2102 316 1 249 339 62 9 chr4 20622662 20622774 -163665888 - MIR SINE MIR -56 206 89 224 289 0 0 chr4 20623359 20623411 -163665251 + L2 LINE L2 3219 3270 -2 284 325 50 0 chr4 20623891 20623971 -163664691 - L2 LINE L2 -13 3300 3217 203 255 157 0 chr4 20624007 20624058 -163664604 - L2 LINE L2 -55 3258 3200 2000 217 98 38 chr4 20624208 20625034 -163663628 + L1MD3 LINE L1 6902 7990 0 351 0 0 0 chr4 20625622 20625661 -163663001 + (TGAA)n Simple_repeat Simple_repeat 2 40 0 374 242 33 64 chr4 20626890 20627052 -163661610 - MIR SINE MIR -50 212 54 22 35 0 0 chr4 20627337 20627366 -163661296 + AT_rich Low_complexity Low_complexity 1 29 0 301 298 65 24 chr4 20627890 20628014 -163660648 + MIR SINE MIR 15 143 -119 27 29 0 0 chr4 20628213 20628247 -163660415 + AT_rich Low_complexity Low_complexity 1 34 0 530 259 90 90 chr4 20628341 20628596 -163660066 + MIR SINE MIR 3 257 -5 1079 197 34 5 chr4 20628630 20628838 -163659824 + MER20 DNA MER1_type 1 214 -5 218 294 43 43 chr4 20629115 20629207 -163659455 - MIR SINE MIR -49 213 122 2159 101 3 0 chr4 20629265 20629572 -163659090 - HERVH LTR ERV1 -7405 308 1 2250 97 49 5 chr4 20629572 20629949 -163658713 - LTR7 LTR ERV1 0 450 1 860 223 51 102 chr4 20629969 20630301 -163658361 + L1MA10 LINE L1 6018 6332 -2 1678 131 4 4 chr4 20630338 20630597 -163658065 - AluSg SINE Alu -3 307 49 1937 57 0 0 chr4 20630974 20631221 -163657441 + L1PA5 LINE L1 5904 6150 -4 198 283 0 0 chr4 20631549 20631595 -163657067 - L2 LINE L2 0 3272 3227 455 87 14 0 chr4 20632041 20632110 -163656552 + (CA)n Simple_repeat Simple_repeat 1 70 0 26 64 0 0 chr4 20633406 20633453 -163655209 + AT_rich Low_complexity Low_complexity 1 47 0 672 296 69 0 chr4 20634160 20634376 -163654286 + MIR SINE MIR 20 250 -12 311 253 11 11 chr4 20634384 20634479 -163654183 + (TTA)n Simple_repeat Simple_repeat 1 95 0 21 36 0 0 chr4 20634585 20634613 -163654049 + AT_rich Low_complexity Low_complexity 1 28 0 192 152 0 0 chr4 20634687 20634720 -163653942 + A-rich Low_complexity Low_complexity 1 33 0 221 227 45 15 chr4 20634842 20634908 -163653754 + MIR SINE MIR 120 187 -75 270 247 26 0 chr4 20634996 20635073 -163653589 - MIR SINE MIR -44 218 140 3990 116 21 68 chr4 20635895 20636611 -163652051 + LTR8 LTR ERV1 1 682 -9 242 304 118 10 chr4 20636653 20636755 -163651907 - MIR SINE MIR -106 156 44 676 98 0 0 chr4 20636757 20636849 -163651813 + LTR8A LTR ERV1 1 92 -635 * 1333 186 126 60 chr4 20636845 20637227 -163651435 + LTR8A LTR ERV1 321 727 0 400 273 73 13 chr4 20637294 20637444 -163651218 + MIR SINE MIR 36 194 -68 6282 18 0 0 chr4 20637531 20638248 -163650414 - L1PA3 LINE L1 0 6155 5439 801 231 17 132 chr4 20639022 20639377 -163649285 - MLT1A1 LTR MaLR 0 365 52 259 318 23 11 chr4 20639536 20639624 -163649038 - L2 LINE L2 0 3272 3184 2344 83 20 0 chr4 20640310 20640611 -163648051 + AluY SINE Alu 1 307 -4 280 336 46 23 chr4 20641755 20641886 -163646776 + MIR SINE MIR 99 232 -30 21 0 0 0 chr4 20642371 20642392 -163646270 + AT_rich Low_complexity Low_complexity 1 21 0 223 325 43 43 chr4 20642446 20642563 -163646099 + L2 LINE L2 2519 2635 -679 397 339 75 55 chr4 20642611 20643027 -163645635 + L2 LINE L2 2826 3249 -64 5228 155 31 34 chr4 20643304 20644379 -163644283 + MER11C LTR ERVK 1 1071 0 25 0 0 0 chr4 20644883 20644908 -163643754 + AT_rich Low_complexity Low_complexity 1 25 0 547 248 34 20 chr4 20645324 20645473 -163643189 - MER58B DNA MER1_type -3 338 188 1898 127 3 59 chr4 20645673 20645997 -163642665 + AluSc SINE Alu 1 306 -3 22 35 0 0 chr4 20646006 20646035 -163642627 + AT_rich Low_complexity Low_complexity 1 29 0 28 71 0 0 chr4 20646097 20646153 -163642509 + AT_rich Low_complexity Low_complexity 1 56 0 221 159 0 0 chr4 20646153 20646197 -163642465 + A-rich Low_complexity Low_complexity 2 45 0 246 288 0 0 chr4 20646222 20646295 -163642367 - MIR SINE MIR -56 206 134 3293 170 107 32 chr4 20646381 20646644 -163642018 - MER72 LTR ERV1 0 722 480 2416 82 0 0 chr4 20646644 20646948 -163641714 + AluY SINE Alu 1 304 -7 3293 170 107 32 chr4 20646948 20647349 -163641313 - MER72 LTR ERV1 -242 480 8 2149 154 23 0 chr4 20647747 20648098 -163640564 + THE1B LTR MaLR 3 361 -3 10116 123 4 46 chr4 20648100 20649729 -163638933 + THE1B-int LTR MaLR 14 1574 -6 2446 121 22 0 chr4 20649733 20650089 -163638573 + THE1B LTR MaLR 1 364 0 1224 227 55 47 chr4 20650089 20650450 -163638212 - MSTD LTR MaLR -32 364 1 5622 259 52 32 chr4 20650450 20652150 -163636512 - MSTD-int LTR MaLR 0 1735 2 1492 239 42 26 chr4 20652152 20652529 -163636133 - MSTD LTR MaLR 0 396 14 429 291 0 0 chr4 20652537 20652678 -163635984 + L1M4 LINE L1 4703 4843 -1303 1594 144 8 0 chr4 20652693 20652956 -163635706 + MER34C LTR ERV1 28 292 -293 1774 188 16 21 chr4 20652956 20653333 -163635329 + L1MC1 LINE L1 5942 6316 -17 1786 154 8 63 chr4 20653476 20653839 -163634823 - MER61A LTR ERV1 0 343 1 1929 199 48 30 chr4 20654131 20654641 -163634021 - MER39 LTR ERV1 0 707 4 308 303 0 74 chr4 20654833 20654955 -163633707 + L2 LINE L2 3199 3311 -2 1135 263 86 21 chr4 20655104 20655488 -163633174 + MLT1I LTR MaLR 1 409 0 22 35 0 0 chr4 20655562 20655591 -163633071 + AT_rich Low_complexity Low_complexity 1 29 0 297 251 97 50 chr4 20655614 20655893 -163632769 - L1M4 LINE L1 -1525 4621 4330 21 36 0 0 chr4 20655935 20655963 -163632699 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr4 20655985 20656022 -163632640 + AT_rich Low_complexity Low_complexity 1 37 0 28 29 0 0 chr4 20656051 20656086 -163632576 + AT_rich Low_complexity Low_complexity 1 35 0 653 309 98 24 chr4 20657154 20657491 -163631171 + MLT1I LTR MaLR 46 407 -2 1322 239 42 24 chr4 20657533 20657913 -163630749 + MLT1B LTR MaLR 1 387 -3 758 232 27 58 chr4 20658084 20658308 -163630354 + MIR SINE MIR 36 252 -10 3545 157 72 19 chr4 20658320 20659049 -163629613 - LTR1B LTR ERV1 0 785 1 226 284 11 57 chr4 20659148 20659236 -163629426 - MER96 DNA MER1_type? -91 84 1 277 366 58 12 chr4 20661061 20661233 -163627429 - L2 LINE L2 -158 3114 2935 203 418 37 0 chr4 20661347 20661481 -163627181 + L2 LINE L2 2399 2537 -777 251 373 59 17 chr4 20661609 20661727 -163626935 - L2 LINE L2 -38 3234 3112 234 335 52 61 chr4 20662759 20662975 -163625687 + MIR SINE MIR 16 227 -35 225 269 0 0 chr4 20663209 20663261 -163625401 + LTR30 LTR ERV1 1 52 -670 1191 83 130 57 chr4 20663261 20663453 -163625209 + LTR12 LTR ERV1 53 258 -456 355 248 34 17 chr4 20663453 20663570 -163625092 + LTR30 LTR ERV1 524 642 -80 1515 88 93 0 chr4 20663571 20663786 -163624876 + LTR12 LTR ERV1 480 714 0 187 281 0 47 chr4 20663834 20663898 -163624764 + L2 LINE L2 3194 3254 -18 1637 197 33 9 chr4 20664222 20664552 -163624110 - MER2 DNA MER2_type -7 338 1 210 167 0 0 chr4 20664553 20664589 -163624073 + (TA)n Simple_repeat Simple_repeat 2 37 0 44 0 0 0 chr4 20664591 20664635 -163624027 + AT_rich Low_complexity Low_complexity 1 44 0 1929 263 49 31 chr4 20664797 20665280 -163623382 - MLT1E LTR MaLR -9 584 88 2769 178 12 0 chr4 20665280 20665770 -163622892 - LOR1a LTR ERV1 0 497 2 1929 263 49 31 chr4 20665770 20665857 -163622805 - MLT1E LTR MaLR -505 88 4 659 331 125 33 chr4 20666306 20667314 -163621348 + L1M4 LINE L1 3136 4236 -1910 405 315 82 30 chr4 20667475 20667805 -163620857 + L1M4 LINE L1 4456 4802 -1344 31 0 0 0 chr4 20668087 20668118 -163620544 + AT_rich Low_complexity Low_complexity 1 31 0 316 303 158 21 chr4 20668171 20668406 -163620256 + L1M4 LINE L1 5124 5393 -753 998 116 27 14 chr4 20668626 20668773 -163619889 - AluSg SINE Alu -159 151 3 209 176 0 0 chr4 20669766 20669800 -163618862 + GA-rich Low_complexity Low_complexity 2 35 0 707 317 54 8 chr4 20671174 20671414 -163617248 - MIR SINE MIR 0 262 12 2096 136 10 0 chr4 20671643 20671938 -163616724 - AluSx SINE Alu -14 298 1 26 64 0 0 chr4 20671941 20671988 -163616674 + AT_rich Low_complexity Low_complexity 1 47 0 534 214 48 37 chr4 20672325 20672512 -163616150 + MER53 DNA DNA 1 189 0 203 0 44 67 chr4 20672615 20672660 -163616002 + (CAAAAA)n Simple_repeat Simple_repeat 3 46 0 261 269 146 31 chr4 20672849 20673001 -163615661 - MER5A DNA MER1_type -10 179 2 394 294 175 0 chr4 20673412 20673572 -163615090 - MLT1K LTR MaLR -305 283 96 275 191 0 0 chr4 20674064 20674111 -163614551 - MER5A DNA MER1_type -84 105 59 180 290 30 70 chr4 20674202 20674302 -163614360 + L2 LINE L2 3177 3272 0 4330 161 70 50 chr4 20674846 20675897 -163612765 + MER11C LTR ERVK 1 1071 0 220 262 214 48 chr4 20677393 20677561 -163611101 - L2 LINE L2 -752 2562 2367 2021 169 14 19 chr4 20677814 20678160 -163610502 - MLT1A1 LTR MaLR 0 365 20 982 219 135 42 chr4 20678160 20678494 -163610168 - MLT1A1 LTR MaLR 0 365 1 2021 169 14 19 chr4 20678494 20678514 -163610148 - MLT1A1 LTR MaLR -345 20 1 246 331 101 14 chr4 20678718 20678857 -163609805 - MIR SINE MIR -55 207 57 214 242 16 32 chr4 20678884 20678946 -163609716 - L2 LINE L2 -3 3310 3250 7831 18 0 0 chr4 20679770 20680713 -163607949 - L1PA3 LINE L1 0 6155 5213 1331 212 36 51 chr4 20680942 20681334 -163607328 - MLT1B LTR MaLR -4 386 1 257 279 0 0 chr4 20682242 20682310 -163606352 + (CA)n Simple_repeat Simple_repeat 1 68 0 1346 145 79 11 chr4 20682409 20682768 -163605894 - L1M1 LINE L1 -743 5403 5101 2883 190 8 0 chr4 20682772 20683299 -163605363 + L1MA4 LINE L1 5488 6018 -282 24 32 0 0 chr4 20683369 20683400 -163605262 + AT_rich Low_complexity Low_complexity 1 31 0 182 269 179 0 chr4 20683762 20683829 -163604833 + L2 LINE L2 3227 3305 -8 195 143 0 0 chr4 20683996 20684031 -163604631 + L2 LINE L2 3279 3313 0 538 176 182 61 chr4 20684145 20684293 -163604369 + MER5A DNA MER1_type 21 186 -3 1097 219 64 122 chr4 20685513 20685978 -163602684 + MLT1D LTR MaLR 1 433 -72 2150 129 0 3 chr4 20685978 20686287 -163602375 - AluSx SINE Alu -4 308 1 1097 219 64 122 chr4 20686287 20686355 -163602307 + MLT1D LTR MaLR 433 503 -2 1991 147 39 30 chr4 20686706 20687067 -163601595 + THE1B LTR MaLR 1 364 0 577 278 90 67 chr4 20687348 20687736 -163600926 + MLT1J2 LTR MaLR 5 401 -49 415 322 0 33 chr4 20688971 20689123 -163599539 + MIR SINE MIR 116 262 0 786 199 0 0 chr4 20689192 20689338 -163599324 - MER3 DNA MER1_type -87 122 24 1117 283 35 0 chr4 20689833 20690091 -163598571 + Tigger7 DNA MER2_type 1 267 -2220 504 206 10 0 chr4 20690089 20690186 -163598476 + Tigger7 DNA MER2_type 2393 2490 -1 * 507 333 111 25 chr4 20690197 20690521 -163598141 + MLT1J2 LTR MaLR 99 450 0 315 374 65 16 chr4 20690532 20690778 -163597884 + L2 LINE L2 2469 2726 -588 1039 175 0 0 chr4 20690846 20691006 -163597656 + FRAM SINE Alu 1 160 -16 571 239 0 0 chr4 20692383 20692544 -163596118 + FLAM_A SINE Alu 5 165 0 191 325 125 25 chr4 20693064 20693224 -163595438 + L2 LINE L2 2436 2611 -703 1781 95 0 0 chr4 20694788 20695019 -163593643 + AluSg/x SINE Alu 77 307 -5 208 280 40 27 chr4 20695138 20695213 -163593449 - MIR SINE MIR -62 146 71 210 349 60 49 chr4 20695944 20696131 -163592531 + MIR SINE MIR 10 196 -65 24 91 0 0 chr4 20696136 20696202 -163592460 + AT_rich Low_complexity Low_complexity 1 66 0 369 0 0 0 chr4 20696972 20697013 -163591649 + (TC)n Simple_repeat Simple_repeat 2 42 0 297 0 0 0 chr4 20697012 20697045 -163591617 + (TG)n Simple_repeat Simple_repeat 2 34 0 * 461 302 132 101 chr4 20697281 20697774 -163590888 - L2 LINE L2 -2 3311 2804 549 261 6 0 chr4 20697782 20697939 -163590723 + L1M4 LINE L1 3853 4010 -2136 5063 132 28 7 chr4 20698034 20698885 -163589777 + L1PA16 LINE L1 5298 6166 0 2334 96 0 3 chr4 20698888 20699200 -163589462 + AluY SINE Alu 1 311 0 251 319 198 19 chr4 20699798 20700005 -163588657 + MIR SINE MIR 19 262 0 294 210 48 0 chr4 20702153 20702215 -163586447 + MIR SINE MIR 128 192 -70 22 0 0 0 chr4 20702986 20703008 -163585654 + AT_rich Low_complexity Low_complexity 1 22 0 317 349 62 8 chr4 20703237 20703366 -163585296 - L2 LINE L2 -3 3269 3134 462 164 0 0 chr4 20703443 20703516 -163585146 + AluJ/FRAM SINE Alu 219 291 -21 312 381 26 5 chr4 20703557 20703746 -163584916 - L2 LINE L2 -212 3060 2868 193 357 56 7 chr4 20704063 20704206 -163584456 - L2 LINE L2 -5 3308 3159 1912 177 43 30 chr4 20704507 20705050 -163583612 - MLT2A2 LTR ERVL 0 554 1 216 250 34 68 chr4 20705225 20705313 -163583349 - MIR SINE MIR -97 165 81 1480 208 63 22 chr4 20705570 20705935 -163582727 + MLT1B LTR MaLR 1 380 -10 550 45 0 91 chr4 20705951 20706039 -163582623 - MADE1 DNA Mariner 0 80 1 187 342 92 0 chr4 20706372 20706448 -163582214 - MIR SINE MIR -114 148 66 309 280 59 42 chr4 20706723 20706841 -163581821 - MIR3 SINE MIR -20 188 69 186 43 0 0 chr4 20707901 20707924 -163580738 + (TG)n Simple_repeat Simple_repeat 2 24 0 26 0 0 0 chr4 20708202 20708228 -163580434 + AT_rich Low_complexity Low_complexity 1 26 0 818 134 65 126 chr4 20708314 20708545 -163580117 + MER20 DNA MER1_type 3 219 0 343 323 87 16 chr4 20708566 20708693 -163579969 - L2 LINE L2 0 3272 3137 510 327 100 5 chr4 20708728 20708948 -163579714 - L2 LINE L2 -40 3232 2992 1924 128 6 64 chr4 20709319 20709677 -163578985 - L1P LINE L1 -3800 2346 2010 970 47 0 31 chr4 20709677 20709806 -163578856 + L1PA8 LINE L1 6045 6169 -3 189 237 0 0 chr4 20710857 20710895 -163577767 + L2 LINE L2 3269 3306 -7 229 315 46 9 chr4 20711036 20711144 -163577518 - MER5A DNA MER1_type -76 113 2 207 0 0 0 chr4 20712096 20712119 -163576543 + (TG)n Simple_repeat Simple_repeat 1 23 0 467 205 16 63 chr4 20714057 20714184 -163574478 - MIR3 SINE MIR -27 181 61 319 347 81 33 chr4 20714537 20714808 -163573854 - Tigger8 DNA MER2_type -375 291 8 1228 238 94 25 chr4 20715870 20716316 -163572346 - Charlie4a DNA MER1_type 0 508 32 22 0 0 0 chr4 20716480 20716502 -163572160 + AT_rich Low_complexity Low_complexity 1 22 0 258 262 0 0 chr4 20716694 20716755 -163571907 + (CATATA)n Simple_repeat Simple_repeat 1 61 0 35 24 0 0 chr4 20716970 20717012 -163571650 + AT_rich Low_complexity Low_complexity 1 42 0 331 311 69 69 chr4 20717115 20717451 -163571211 - L1MC4a LINE L1 -1893 5915 5577 2326 97 0 0 chr4 20717451 20717759 -163570903 + AluSq SINE Alu 1 308 -5 331 311 69 69 chr4 20717759 20717830 -163570832 - L1MC4a LINE L1 -2230 5578 5508 6345 268 78 28 chr4 20717876 20722347 -163566315 - L1ME3 LINE L1 -7 6549 1853 808 267 61 18 chr4 20722377 20722745 -163565917 + MLT1E LTR MaLR 1 475 -118 268 234 55 94 chr4 20722768 20722969 -163565693 + L2 LINE L2 2244 2436 -878 273 342 69 45 chr4 20723037 20723239 -163565423 - L2 LINE L2 0 3313 3107 497 306 118 51 chr4 20723284 20723852 -163564810 + L2 LINE L2 2686 3309 -4 494 304 42 37 chr4 20723850 20724041 -163564621 - MIR SINE MIR -65 197 6 * 182 213 123 107 chr4 20724949 20725071 -163563591 + MIR3 SINE MIR 13 136 -72 4150 310 105 16 chr4 20725338 20727104 -163561558 + L2 LINE L2 1054 2976 -338 185 128 21 0 chr4 20727933 20727980 -163560682 + (CA)n Simple_repeat Simple_repeat 2 49 0 210 71 0 0 chr4 20727993 20728021 -163560641 + (GA)n Simple_repeat Simple_repeat 1 28 0 2029 247 80 33 chr4 20728156 20729371 -163559291 - L1ME1 LINE L1 0 6166 4876 2183 143 57 40 chr4 20729371 20729792 -163558870 - MSTA LTR MaLR 0 428 1 2029 247 80 33 chr4 20729792 20729884 -163558778 - L1ME1 LINE L1 -1290 4876 4790 662 179 32 6 chr4 20732335 20732491 -163556171 - L1MA9 LINE L1 -7 6305 6146 264 204 0 0 chr4 20732513 20732562 -163556100 - L1MA9 LINE L1 -156 6156 6108 * 7578 122 13 36 chr4 20732557 20733744 -163554918 - THE1C-int LTR MaLR -421 1159 1 1911 160 21 24 chr4 20733744 20734120 -163554542 - THE1C LTR MaLR 0 375 1 9901 226 58 15 chr4 20734125 20735013 -163553649 - L1 LINE L1 -921 5225 4377 1586 224 0 0 chr4 20735013 20735316 -163553346 - AluJo SINE Alu -9 303 1 9901 226 58 15 chr4 20735316 20737344 -163551318 - L1 LINE L1 -1769 4377 2182 1311 184 32 8 chr4 20737346 20737596 -163551066 - L1PA15 LINE L1 -4 6161 5906 947 157 87 0 chr4 20737599 20737771 -163550891 - MSTA LTR MaLR -8 420 234 6418 167 20 14 chr4 20737772 20738868 -163549794 - L1P3 LINE L1 -5351 1110 8 1430 270 29 20 chr4 20738870 20739422 -163549240 + L1 LINE L1 2558 3324 -4242 715 213 0 6 chr4 20739415 20739579 -163549083 + L1 LINE L1 5796 5958 -1607 * 251 319 198 19 chr4 20740139 20740346 -163548316 - MIR SINE MIR 0 262 19 1748 167 0 3 chr4 20740962 20741274 -163547388 - AluY SINE Alu 0 311 1 732 79 0 0 chr4 20841340 20841429 -163447233 - AluSg1 SINE Alu -219 90 2 509 276 106 68 chr4 20841532 20841796 -163446866 + MLT1I LTR MaLR 121 394 -15 2365 195 106 86 chr4 20841797 20841879 -163446783 + Charlie1a DNA MER1_type 3 82 -2679 1897 135 0 55 chr4 20841879 20842191 -163446471 - AluSx SINE Alu -17 295 1 2365 195 106 86 chr4 20842191 20842277 -163446385 + Charlie1a DNA MER1_type 82 165 -2596 2713 143 31 7 chr4 20842277 20842698 -163445964 - MSTB1 LTR MaLR -1 431 1 2365 195 106 86 chr4 20842698 20842810 -163445852 + Charlie1a DNA MER1_type 165 273 -2488 1590 186 31 7 chr4 20842810 20843101 -163445561 + AluJo SINE Alu 2 299 -13 2365 195 106 86 chr4 20843101 20843571 -163445091 + Charlie1a DNA MER1_type 273 770 -685 2103 133 3 22 chr4 20843571 20843888 -163444774 + AluSx SINE Alu 1 311 -1 6149 208 9 22 chr4 20843894 20845282 -163443380 + L1 LINE L1 3957 5326 -820 1096 174 0 112 chr4 20845282 20845523 -163443139 + AluJb SINE Alu 80 293 -19 3360 251 31 6 chr4 20845524 20846165 -163442497 + L1PA16 LINE L1 5321 5977 -189 2499 119 16 24 chr4 20846165 20846543 -163442119 - THE1C LTR MaLR 0 375 1 10657 110 12 36 chr4 20846543 20848162 -163440500 - THE1C-int LTR MaLR 0 1580 1 1519 134 17 13 chr4 20848162 20848401 -163440261 - THE1C LTR MaLR 0 375 136 262 158 193 175 chr4 20848402 20848435 -163440227 - LTR41 LTR ERVL -57 716 685 2297 96 0 0 chr4 20848435 20848749 -163439913 + AluSx SINE Alu 1 314 0 262 158 193 175 chr4 20848749 20848885 -163439777 - LTR41 LTR ERVL -88 685 543 553 188 83 23 chr4 20848900 20849033 -163439629 - LTR41 LTR ERVL -599 174 34 443 262 49 8 chr4 20849133 20849255 -163439407 - MLT1H LTR MaLR -422 127 1 248 289 66 8 chr4 20849291 20849412 -163439250 + L1MC/D LINE L1 5754 5881 -1927 2350 108 114 8 chr4 20849503 20849890 -163438772 - MSTA LTR MaLR 0 428 1 225 343 0 0 chr4 20849961 20850028 -163438634 - L2 LINE L2 -559 2755 2689 572 300 17 35 chr4 20850053 20850283 -163438379 - MIR SINE MIR 0 262 37 1596 156 102 25 chr4 20850482 20850765 -163437897 + AluSx SINE Alu 1 305 -7 251 280 102 0 chr4 20851071 20851189 -163437473 + MIR SINE MIR 77 206 -56 2655 107 3 3 chr4 20851197 20851561 -163437101 - THE1B LTR MaLR 0 364 1 1742 201 61 16 chr4 20852156 20852535 -163436127 + MSTD LTR MaLR 1 396 0 278 366 28 7 chr4 20852544 20852686 -163435976 - LTR16A LTR ERVL -18 432 288 2225 115 0 34 chr4 20852870 20853191 -163435471 + AluSx SINE Alu 2 311 -1 298 261 0 0 chr4 20853497 20853562 -163435100 + L2 LINE L2 3244 3308 -5 6443 73 14 21 chr4 20853669 20854563 -163434099 - L1PA11 LINE L1 0 6174 5287 2070 131 0 0 chr4 20854717 20855036 -163433626 - AluSx SINE Alu 0 319 1 413 285 23 23 chr4 20855872 20856002 -163432660 + MLT1K LTR MaLR 142 271 -317 1129 84 0 0 chr4 20856005 20856147 -163432515 - AluSg/x SINE Alu -12 298 157 6999 166 23 14 chr4 20856331 20856914 -163431748 + L1PB3 LINE L1 3819 4395 -1759 2359 94 0 0 chr4 20856914 20857202 -163431460 + AluSc SINE Alu 1 288 -21 6999 166 23 14 chr4 20857202 20858929 -163429733 + L1PB3 LINE L1 4395 6152 -2 231 133 0 0 chr4 20859035 20859080 -163429582 + (A)n Simple_repeat Simple_repeat 1 45 0 1204 162 26 13 chr4 20859102 20859336 -163429326 - MSTD LTR MaLR -159 237 1 257 262 244 18 chr4 20859994 20860158 -163428504 - L2 LINE L2 0 3313 3113 1802 141 61 7 chr4 20860540 20860837 -163427825 - LTR1 LTR ERV1 0 785 473 3644 119 38 144 chr4 20860839 20862264 -163426398 - LTR12 LTR ERV1 -23 1641 6 1137 248 52 16 chr4 20862264 20862601 -163426061 - LTR1 LTR ERV1 -293 533 189 * 1397 151 15 19 chr4 20862591 20862850 -163425812 - LTR1 LTR ERV1 -527 258 1 359 239 28 9 chr4 20863168 20863277 -163425385 + MER103 DNA DNA 36 146 -20 941 110 0 7 chr4 20863277 20863413 -163425249 - AluSg/x SINE Alu -13 299 165 1849 119 0 95 chr4 20863540 20863867 -163424795 - AluY SINE Alu -15 296 1 299 223 116 27 chr4 20864498 20864610 -163424052 + L2 LINE L2 3141 3262 -10 359 272 24 39 chr4 20865048 20865236 -163423426 - MLT1I LTR MaLR -3 406 266 299 208 26 26 chr4 20865314 20865391 -163423271 - MLT1J1 LTR MaLR -339 107 31 1287 189 6 102 chr4 20865436 20865770 -163422892 - AluJo SINE Alu -10 302 1 2464 141 18 2 chr4 20866221 20866618 -163422044 - MER57A LTR ERV1 0 403 1 21 0 0 0 chr4 20866632 20866653 -163422009 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr4 20866794 20866824 -163421838 + AT_rich Low_complexity Low_complexity 1 30 0 277 338 45 13 chr4 20866838 20866992 -163421670 - MIR SINE MIR -67 195 37 955 295 36 29 chr4 20867392 20867809 -163420853 + Tigger8 DNA MER2_type 245 664 -2 371 253 35 0 chr4 20867836 20867923 -163420739 + L2 LINE L2 3183 3272 0 1331 199 4 19 chr4 20868030 20868301 -163420361 + MLT2B1 LTR ERVL 1 267 -253 759 138 22 14 chr4 20868348 20868486 -163420176 - L1MA5A LINE L1 -3 6294 6156 953 204 144 82 chr4 20868559 20869059 -163419603 - LTR1B LTR ERV1 -237 589 59 4830 106 35 7 chr4 20869079 20869815 -163418847 - L1MA5A LINE L1 -130 6167 5411 2492 92 0 9 chr4 20869815 20870142 -163418520 + THE1B LTR MaLR 1 324 -40 1882 125 6 61 chr4 20870142 20870469 -163418193 + AluSp SINE Alu 1 309 -4 1272 100 24 0 chr4 20870469 20870639 -163418023 + AluSc SINE Alu 132 305 -4 479 96 55 0 chr4 20870639 20870712 -163417950 - L1MA5A LINE L1 -925 5221 5145 825 211 0 69 chr4 20870748 20870966 -163417696 + MLT2B1 LTR ERVL 318 520 0 283 304 24 48 chr4 20870976 20871144 -163417518 + L1MEd LINE L1 299 462 -5954 15507 118 40 9 chr4 20871335 20872266 -163416396 + Tigger1 DNA MER2_type 2 903 -1515 1754 47 0 0 chr4 20872266 20872480 -163416182 - L1PA6 LINE L1 0 6154 5941 15507 118 40 9 chr4 20872480 20873893 -163414769 + Tigger1 DNA MER2_type 903 2417 -1 21 0 0 0 chr4 20874707 20874728 -163413934 + AT_rich Low_complexity Low_complexity 1 21 0 369 209 65 86 chr4 20874799 20874928 -163413734 - L1ME3A LINE L1 0 6162 6038 450 220 88 55 chr4 20875067 20875249 -163413413 - MIR SINE MIR -73 189 2 1664 179 19 56 chr4 20875303 20875678 -163412984 + MLT1A1 LTR MaLR 1 361 -4 3621 163 20 99 chr4 20875678 20876562 -163412100 - LTR1B LTR ERV1 0 826 13 223 184 58 0 chr4 20876614 20876701 -163411961 + (TA)n Simple_repeat Simple_repeat 1 92 0 397 226 34 68 chr4 20876774 20876951 -163411711 + (TA)n Simple_repeat Simple_repeat 1 171 0 391 249 45 34 chr4 20876998 20877175 -163411487 + (TA)n Simple_repeat Simple_repeat 2 180 0 230 192 0 19 chr4 20877251 20877303 -163411359 + L1MEd LINE L1 2013 2063 -4363 324 194 62 0 chr4 20877318 20877462 -163411200 + (TA)n Simple_repeat Simple_repeat 1 153 0 23 0 0 0 chr4 20877469 20877492 -163411170 + AT_rich Low_complexity Low_complexity 1 23 0 458 216 60 0 chr4 20877502 20877636 -163411026 - MIR SINE MIR -49 213 72 4740 102 16 34 chr4 20878001 20878443 -163410219 - LTR8 LTR ERV1 0 691 265 1829 125 25 69 chr4 20878443 20878762 -163409900 - AluSx SINE Alu -7 305 1 4740 102 16 34 chr4 20878762 20879022 -163409640 - LTR8 LTR ERV1 -426 265 2 545 294 47 19 chr4 20879049 20879263 -163409399 - MIR SINE MIR -15 247 28 208 267 0 0 chr4 20880303 20880348 -163408314 + L2 LINE L2 3251 3295 -18 2419 103 0 0 chr4 20880373 20880675 -163407987 + AluSq SINE Alu 1 302 -11 209 148 0 111 chr4 20880808 20880862 -163407800 - L2 LINE L2 -1 3271 3224 279 146 125 0 chr4 20880898 20880946 -163407716 - MER103 DNA DNA -46 120 67 470 17 17 0 chr4 20880965 20881024 -163407638 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 2433 150 49 28 chr4 20881164 20881637 -163407025 + MER67A LTR ERV1 1 483 -60 1288 213 23 11 chr4 20881637 20881900 -163406762 + Tigger7 DNA MER2_type 2 267 -466 571 148 10 50 chr4 20881898 20881916 -163406746 + Tigger7 DNA MER2_type 2395 2412 -79 * 2372 88 59 34 chr4 20881916 20882270 -163406392 + THE1B LTR MaLR 1 363 -1 571 148 10 50 chr4 20882270 20882352 -163406310 + Tigger7 DNA MER2_type 2412 2491 0 388 154 0 0 chr4 20882352 20882415 -163406247 + MER67A LTR ERV1 481 543 0 1930 150 31 3 chr4 20882862 20883155 -163405507 + AluJo SINE Alu 1 301 -11 1855 115 100 0 chr4 20883163 20883432 -163405230 + AluSx SINE Alu 1 296 -16 252 0 0 0 chr4 20883478 20883506 -163405156 + (CA)n Simple_repeat Simple_repeat 1 28 0 1295 162 25 26 chr4 20883975 20884314 -163404348 + MLT1D LTR MaLR 12 395 -110 2197 119 0 16 chr4 20884314 20884624 -163404038 - AluSx SINE Alu -7 305 1 1295 162 25 26 chr4 20884624 20884735 -163403927 + MLT1D LTR MaLR 395 505 0 334 322 27 7 chr4 20885570 20885716 -163402946 + MIR SINE MIR 103 251 -11 1684 147 39 0 chr4 20886064 20886343 -163402319 - L1P LINE L1 -972 5174 4885 1894 159 44 49 chr4 20886504 20886894 -163401768 + MLT1B LTR MaLR 3 390 0 1261 185 73 31 chr4 20886896 20887155 -163401507 + AluJo SINE Alu 1 270 -42 201 108 0 0 chr4 20887155 20887192 -163401470 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 200 42 0 0 chr4 20887193 20887217 -163401445 + (GGAA)n Simple_repeat Simple_repeat 3 26 0 285 240 0 0 chr4 20887221 20887296 -163401366 + GA-rich Low_complexity Low_complexity 1 75 0 1873 97 89 0 chr4 20887296 20887554 -163401108 + AluSq SINE Alu 1 281 -32 901 54 0 23 chr4 20887555 20887685 -163400977 + (GAAA)n Simple_repeat Simple_repeat 2 128 0 402 182 17 45 chr4 20887693 20887869 -163400793 + GA-rich Low_complexity Low_complexity 2 172 0 2156 130 0 0 chr4 20887869 20888161 -163400501 + AluSc SINE Alu 1 292 -17 213 121 0 0 chr4 20888161 20888194 -163400468 + (AGGGGG)n Simple_repeat Simple_repeat 2 34 0 255 61 0 0 chr4 20888546 20888579 -163400083 + (CA)n Simple_repeat Simple_repeat 1 33 0 188 277 60 24 chr4 20888808 20888891 -163399771 - L2 LINE L2 -32 3240 3155 2566 73 3 6 chr4 20889701 20890015 -163398647 + AluSp SINE Alu 1 313 0 21 57 0 0 chr4 20890252 20890287 -163398375 + AT_rich Low_complexity Low_complexity 1 35 0 224 224 0 0 chr4 20890666 20890715 -163397947 + T-rich Low_complexity Low_complexity 2 50 0 290 171 0 13 chr4 20891392 20891468 -163397194 + (ATG)n Simple_repeat Simple_repeat 1 75 0 1140 189 166 2 chr4 20893243 20893543 -163395119 - MSTB LTR MaLR -3 423 1 2116 137 0 7 chr4 20894037 20894337 -163394325 + AluJb SINE Alu 1 298 -14 3061 148 46 15 chr4 20894455 20894996 -163393666 - L1MB3 LINE L1 -6 6177 5620 2100 204 25 45 chr4 20895828 20896343 -163392319 - MLT1D LTR MaLR 0 505 1 374 174 79 85 chr4 20896385 20896521 -163392141 - Charlie8 DNA MER1_type -2268 149 2 828 309 36 0 chr4 20896768 20897020 -163391642 - MIR SINE MIR 0 262 2 2024 94 11 7 chr4 20897356 20897631 -163391031 + AluSx SINE Alu 1 276 -36 7416 52 10 16 chr4 20897633 20898639 -163390023 + L1PA7 LINE L1 5155 6154 0 222 186 47 0 chr4 20899096 20899139 -163389523 + GA-rich Low_complexity Low_complexity 3 47 0 1495 191 3 31 chr4 20899259 20899547 -163389115 + AluJo SINE Alu 5 284 -28 401 101 56 11 chr4 20900041 20900130 -163388532 + GA-rich Low_complexity Low_complexity 3 95 0 355 237 11 11 chr4 20900412 20900505 -163388157 + MLT1I LTR MaLR 317 409 0 21 0 0 0 chr4 20900546 20900567 -163388095 + AT_rich Low_complexity Low_complexity 1 21 0 2137 128 7 0 chr4 20900636 20900933 -163387729 + AluSx SINE Alu 2 300 -12 323 296 82 76 chr4 20901490 20901794 -163386868 + MLT1K LTR MaLR 131 436 -152 290 269 154 19 chr4 20903800 20903904 -163384758 + MIR3 SINE MIR 43 160 -48 211 167 19 37 chr4 20904038 20904092 -163384570 + MIR3 SINE MIR 155 207 -1 4174 214 70 72 chr4 20904814 20906629 -163382033 + L1MB3 LINE L1 4969 6786 603 3888 165 51 56 chr4 20906629 20907418 -163381244 - LTR1 LTR ERV1 0 785 1 186 43 0 0 chr4 20907423 20907446 -163381216 + (CATA)n Simple_repeat Simple_repeat 2 24 0 4174 214 70 72 chr4 20907446 20907844 -163380818 + L1MB3 LINE L1 5784 6181 -2 1923 184 119 19 chr4 20907844 20908263 -163380399 + LOR1b LTR ERV1 1 461 0 375 266 44 9 chr4 20908276 20908389 -163380273 + L1MC4 LINE L1 7240 7356 -686 3322 151 165 48 chr4 20908392 20909431 -163379231 - pTR5 LTR ERV1 0 2438 1143 962 217 19 28 chr4 20909915 20910127 -163378535 + MER63A DNA MER1_type 1 210 0 446 273 79 14 chr4 20910213 20910352 -163378310 + MIR3 SINE MIR 4 151 -57 1410 200 25 4 chr4 20910352 20910627 -163378035 + AluJo SINE Alu 1 281 -31 335 259 53 111 chr4 20910650 20910839 -163377823 - MER5B DNA MER1_type 0 178 1 2006 262 102 9 chr4 20910873 20911415 -163377247 + MLT1E LTR MaLR 1 592 -1 22 0 0 0 chr4 20911547 20911569 -163377093 + AT_rich Low_complexity Low_complexity 1 22 0 1954 208 94 84 chr4 20911697 20911761 -163376901 - MLT1E LTR MaLR 0 593 531 2496 164 20 18 chr4 20911761 20912205 -163376457 + L1MB2 LINE L1 5710 6157 -14 2907 83 11 3 chr4 20912205 20912566 -163376096 + THE1B LTR MaLR 1 364 0 2496 164 20 18 chr4 20912566 20912577 -163376085 + L1MB2 LINE L1 6157 6166 -5 1954 208 94 84 chr4 20912577 20913098 -163375564 - MLT1E LTR MaLR -62 531 2 381 220 76 0 chr4 20913107 20913212 -163375450 - MIR SINE MIR -62 146 28 1145 110 0 0 chr4 20913272 20913427 -163375235 + L1PA15 LINE L1 6011 6165 0 1430 186 16 86 chr4 20913427 20913463 -163375199 - MER93b LTR ERV1 -7 366 329 2307 94 0 10 chr4 20913463 20913761 -163374901 + AluSp SINE Alu 1 295 -18 1430 186 16 86 chr4 20913761 20914106 -163374556 - MER93b LTR ERV1 -44 329 12 588 42 0 0 chr4 20914471 20914543 -163374119 + AluSp/q SINE Alu 230 301 -12 24 0 0 0 chr4 20914717 20914741 -163373921 + AT_rich Low_complexity Low_complexity 1 24 0 608 254 88 19 chr4 20915768 20915973 -163372689 + MIR SINE MIR 3 221 -41 352 259 113 88 chr4 20916158 20916397 -163372265 + L2 LINE L2 3027 3271 -1 746 186 118 0 chr4 20916683 20916844 -163371818 + MER104 DNA MER2_type 1 180 0 195 100 0 0 chr4 20917643 20917673 -163370989 + (TC)n Simple_repeat Simple_repeat 2 31 0 198 71 0 0 chr4 20917673 20917701 -163370961 + (CA)n Simple_repeat Simple_repeat 1 28 0 412 273 40 13 chr4 20918296 20918446 -163370216 - MER103 DNA DNA -10 156 3 438 340 72 0 chr4 20918505 20918658 -163370004 + MIR3 SINE MIR 38 201 -7 28 0 0 0 chr4 20919917 20919945 -163368717 + AT_rich Low_complexity Low_complexity 1 28 0 249 271 0 0 chr4 20920221 20920280 -163368382 + MER3 DNA MER1_type 3 61 -148 811 152 97 14 chr4 20920363 20920508 -163368154 + MER3 DNA MER1_type 53 209 0 244 350 60 16 chr4 20920886 20921069 -163367593 + L3 LINE CR1 1064 1254 -323 2371 136 52 0 chr4 20921829 20922175 -163366487 - THE1B LTR MaLR 0 364 1 302 183 14 0 chr4 20922812 20922883 -163365779 + GA-rich Low_complexity Low_complexity 3 74 0 263 54 0 0 chr4 20923150 20923187 -163365475 + L1MA3 LINE L1 6269 6305 0 364 338 36 31 chr4 20923852 20924077 -163364585 + L1M4 LINE L1 2316 2541 -3605 4512 116 17 49 chr4 20924209 20924925 -163363737 - L1PA16 LINE L1 -9 6157 5465 462 271 106 85 chr4 20925013 20925485 -163363177 + L1M4 LINE L1 2811 3292 -2854 2208 97 3 3 chr4 20925485 20925773 -163362889 + AluSq SINE Alu 1 288 -25 649 237 143 18 chr4 20925880 20926104 -163362558 + MIR SINE MIR 11 262 0 227 292 78 70 chr4 20926128 20926511 -163362151 + L1M4 LINE L1 3386 3771 -2375 927 112 0 8 chr4 20926513 20926647 -163362015 - AluSq/x SINE Alu -180 133 1 343 297 76 63 chr4 20926689 20927022 -163361640 + L1M4 LINE L1 3826 4170 -1976 6580 34 1 0 chr4 20927022 20927757 -163360905 - L1PA4 LINE L1 0 6155 5420 343 297 76 63 chr4 20927757 20927978 -163360684 + L1M4 LINE L1 4170 4387 -1759 259 288 72 36 chr4 20927986 20928125 -163360537 - LTR67 LTR ERVL -21 536 393 1062 164 169 0 chr4 20928138 20928357 -163360305 + MSTB1-int LTR MaLR 1396 1651 0 1499 199 28 71 chr4 20928357 20928571 -163360091 + MSTB1 LTR MaLR 1 192 -240 2331 74 3 3 chr4 20928571 20928867 -163359795 + AluY SINE Alu 1 296 -15 1499 199 28 71 chr4 20928867 20929045 -163359617 + MSTB1 LTR MaLR 192 376 -56 489 144 0 82 chr4 20929049 20929146 -163359516 - AluJ/FRAM SINE Alu -7 305 217 411 188 47 78 chr4 20929251 20929379 -163359283 - pTR5 LTR ERV1 -1546 892 769 1544 246 118 4 chr4 20929396 20929880 -163358782 + L1MC4 LINE L1 7355 7893 -149 227 149 21 0 chr4 20929887 20929934 -163358728 + L1MC4 LINE L1 7985 8032 -10 27 0 0 0 chr4 20929934 20929961 -163358701 + AT_rich Low_complexity Low_complexity 1 27 0 24 0 0 0 chr4 20930170 20930194 -163358468 + AT_rich Low_complexity Low_complexity 1 24 0 637 291 87 78 chr4 20930306 20930752 -163357910 - L1MEd LINE L1 -4921 1198 749 512 280 40 30 chr4 20931408 20931630 -163357032 - MIR SINE MIR -28 234 14 198 333 49 95 chr4 20932569 20932812 -163355850 + L2 LINE L2 2875 3106 -166 436 250 143 25 chr4 20933011 20933207 -163355455 - MIR SINE MIR -15 247 29 296 231 164 10 chr4 20933935 20934039 -163354623 - MER117 DNA MER1_type -74 123 4 756 257 11 11 chr4 20934054 20934229 -163354433 - MER5B DNA MER1_type -3 175 1 245 283 66 38 chr4 20934676 20934782 -163353880 + MIR SINE MIR 98 206 -56 492 217 25 57 chr4 20935030 20935187 -163353475 - L1ME3 LINE L1 -96 6066 5915 215 191 0 0 chr4 20935691 20935733 -163352929 + MIR SINE MIR 81 122 -140 646 221 80 49 chr4 20935854 20936080 -163352582 + MIR SINE MIR 30 262 0 275 336 86 0 chr4 20936250 20936366 -163352296 + L2 LINE L2 3138 3263 -9 285 298 24 12 chr4 20936449 20936533 -163352129 - L2 LINE L2 -215 3057 2973 1919 141 113 3 chr4 20936766 20937093 -163351569 - MER47A DNA MER2_type -2 364 2 194 386 129 0 chr4 20937236 20937337 -163351325 + L2 LINE L2 3153 3266 -6 827 150 0 8 chr4 20937419 20937552 -163351110 + MER3 DNA MER1_type 1 132 -77 1927 143 140 6 chr4 20937586 20937929 -163350733 - MSTA LTR MaLR 0 428 40 1658 100 12 16 chr4 20937935 20938184 -163350478 + MSTA-int LTR MaLR 1333 1580 0 2185 131 141 24 chr4 20938184 20938530 -163350132 + MSTA LTR MaLR 1 398 -30 2119 106 3 7 chr4 20938530 20938841 -163349821 - AluSx SINE Alu 0 310 1 2185 131 141 24 chr4 20938841 20938876 -163349786 + MSTA LTR MaLR 398 428 0 1227 239 73 24 chr4 20938887 20939423 -163349239 - HsTC2 DNA Tc2 -122 1776 5 933 272 34 13 chr4 20940034 20940269 -163348393 + MIR SINE MIR 2 241 -21 1667 173 23 20 chr4 20941701 20942001 -163346661 - AluJo SINE Alu -11 301 1 954 82 7 37 chr4 20943542 20943677 -163344985 + AluY SINE Alu 1 131 -180 315 0 0 0 chr4 20944081 20944116 -163344546 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 599 226 17 111 chr4 20944322 20944422 -163344240 + MIR SINE MIR 13 80 -182 2307 107 3 7 chr4 20944422 20944731 -163343931 + AluSx SINE Alu 1 308 -4 599 226 17 111 chr4 20944731 20944864 -163343798 + MIR SINE MIR 80 224 -38 2800 20 7 0 chr4 20944923 20945229 -163343433 - L1PA4 LINE L1 0 6155 5848 198 392 27 0 chr4 20945294 20945368 -163343294 - L2 LINE L2 -79 3193 3118 360 298 43 80 chr4 20945408 20945559 -163343103 - LTR16C LTR ERVL -5 486 331 574 115 0 0 chr4 20945559 20945637 -163343025 + MADE1 DNA Mariner 1 78 -2 360 298 43 80 chr4 20945637 20945834 -163342828 - LTR16C LTR ERVL -160 331 151 1255 150 68 13 chr4 20947158 20947392 -163341270 + MLT1F LTR MaLR 296 542 0 225 308 64 0 chr4 20947393 20947471 -163341191 + MER5A DNA MER1_type 78 160 -29 2622 42 0 7 chr4 20947991 20948297 -163340365 + AluY SINE Alu 1 304 -7 1943 163 10 0 chr4 20948384 20948684 -163339978 + AluJb SINE Alu 5 307 -5 435 270 157 0 chr4 20949309 20949468 -163339194 - MIR SINE MIR -10 252 69 217 256 0 85 chr4 20949451 20949533 -163339129 - L2 LINE L2 -16 3256 3182 * 1669 156 7 7 chr4 20949537 20949826 -163338836 + AluSx SINE Alu 1 289 -23 1458 163 97 0 chr4 20949919 20950205 -163338457 - AluJo SINE Alu 0 311 1 686 254 153 5 chr4 20950370 20950579 -163338083 + MIR SINE MIR 4 243 -19 365 286 168 30 chr4 20950779 20951149 -163337513 - L1ME LINE L1 -316 5805 5385 2245 91 13 0 chr4 20951353 20951661 -163337001 + AluSx SINE Alu 1 312 0 275 161 18 0 chr4 20951674 20951730 -163336932 + A-rich Low_complexity Low_complexity 4 60 0 202 269 60 0 chr4 20952406 20952473 -163336189 - MIR SINE MIR -70 192 122 915 266 120 25 chr4 20952475 20952949 -163335713 - LTR33A LTR ERVL -3 520 2 2776 70 3 17 chr4 20953771 20954129 -163334533 - THE1A LTR MaLR 0 355 3 1532 143 57 8 chr4 20954129 20954394 -163334268 - AluJb SINE Alu -34 278 1 314 261 122 17 chr4 20954456 20954571 -163334091 + MIR SINE MIR 40 166 -96 1190 155 73 0 chr4 20954627 20954961 -163333701 + L1MB8 LINE L1 5138 5489 -695 1558 207 18 18 chr4 20955153 20955487 -163333175 + L1MB8 LINE L1 5508 5841 -337 457 293 191 5 chr4 20955548 20955763 -163332899 - MIR SINE MIR 0 262 8 1028 243 60 13 chr4 20956225 20956525 -163332137 + L2 LINE L2 1785 2098 -1216 721 202 129 31 chr4 20956581 20956842 -163331820 + LTR41 LTR ERVL 3 296 -499 307 223 54 27 chr4 20957039 20957151 -163331511 + LTR41 LTR ERVL 649 763 -10 1482 212 182 27 chr4 20957157 20957713 -163330949 + L2 LINE L2 2169 2810 -504 312 256 90 0 chr4 20957715 20957793 -163330869 + MER119 DNA MER1_type 3 87 -496 540 233 15 23 chr4 20957816 20957949 -163330713 + MER119 DNA MER1_type 451 582 -1 1083 256 27 72 chr4 20957960 20958197 -163330465 + L2 LINE L2 2824 3027 -286 1352 225 48 61 chr4 20958197 20958592 -163330070 - MLT1B LTR MaLR 0 390 1 1083 256 27 72 chr4 20958592 20958866 -163329796 + L2 LINE L2 3027 3312 -1 29 0 0 0 chr4 20959014 20959043 -163329619 + AT_rich Low_complexity Low_complexity 1 29 0 2164 82 0 7 chr4 20959169 20959460 -163329202 + AluSc SINE Alu 1 289 -20 334 325 70 0 chr4 20959672 20959786 -163328876 + MIR3 SINE MIR 45 166 -42 2582 168 40 72 chr4 20959808 20959829 -163328833 + L1MB5 LINE L1 5588 5608 -566 1901 121 0 66 chr4 20959829 20960161 -163328501 + AluSx SINE Alu 1 310 -2 2582 168 40 72 chr4 20960161 20960478 -163328184 + L1MB5 LINE L1 5608 5934 -240 1658 161 18 3 chr4 20960478 20960763 -163327899 + AluJo SINE Alu 1 289 -23 2582 168 40 72 chr4 20960763 20961002 -163327660 + L1MB5 LINE L1 5934 6148 -26 2421 60 0 7 chr4 20961002 20961303 -163327359 + AluY SINE Alu 1 299 -12 2582 168 40 72 chr4 20961303 20961330 -163327332 + L1MB5 LINE L1 6148 6174 0 431 210 197 25 chr4 20961356 20961478 -163327184 + MIR3 SINE MIR 18 159 -49 1868 121 36 0 chr4 20962573 20962876 -163325786 + AluSx SINE Alu 1 313 0 750 203 0 0 chr4 20962886 20963019 -163325643 + FLAM_C SINE Alu 1 133 0 262 250 14 0 chr4 20963090 20963162 -163325500 + HAL1b LINE L1 1248 1320 -28 1816 136 14 7 chr4 20963186 20963480 -163325182 + AluJb SINE Alu 1 296 -16 644 96 0 0 chr4 20964200 20964294 -163324368 - L1PA6 LINE L1 -1 6153 6060 657 270 104 14 chr4 20964726 20964948 -163323714 + MIR SINE MIR 8 249 -13 284 278 44 0 chr4 20965129 20965219 -163323443 + L2 LINE L2 3202 3295 -18 399 271 104 64 chr4 20965481 20965707 -163322955 - MIR SINE MIR -15 247 5 327 356 34 0 chr4 20966512 20966689 -163321973 - L3 LINE CR1 -1 1576 1394 206 217 33 17 chr4 20966830 20966890 -163321772 + GA-rich Low_complexity Low_complexity 2 62 0 1598 215 73 0 chr4 20966951 20967291 -163321371 + MLT1A1 LTR MaLR 1 365 0 217 250 163 64 chr4 20967932 20968104 -163320558 - MIR SINE MIR -66 196 8 393 285 21 24 chr4 20968162 20968303 -163320359 + MIR SINE MIR 22 169 -39 1317 175 36 12 chr4 20968366 20968618 -163320044 + AluJo SINE Alu 1 258 -54 1304 255 64 9 chr4 20968620 20969110 -163319552 - MER21B LTR ERV1 -199 664 98 499 260 58 23 chr4 20969236 20969409 -163319253 + MIR SINE MIR 31 209 -53 331 229 0 0 chr4 20970840 20970901 -163317761 + L2 LINE L2 3193 3253 -60 1840 140 0 7 chr4 20970932 20971225 -163317437 + AluJb SINE Alu 1 291 -21 261 0 0 0 chr4 20971228 20971257 -163317405 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 2139 107 13 0 chr4 20971369 20971678 -163316984 + AluSp SINE Alu 1 313 0 763 149 16 0 chr4 20971843 20971964 -163316698 - AluJb SINE Alu -12 300 178 1947 103 31 3 chr4 20971964 20972254 -163316408 - AluSx SINE Alu -14 298 1 21 0 0 0 chr4 20972488 20972509 -163316153 + AT_rich Low_complexity Low_complexity 1 21 0 316 336 41 0 chr4 20972701 20972823 -163315839 + MIR SINE MIR 66 192 -70 286 273 10 20 chr4 20972881 20972980 -163315682 - L1MA10 LINE L1 0 6334 6237 577 284 70 37 chr4 20974151 20974394 -163314268 - MIR SINE MIR 0 262 12 1620 171 35 0 chr4 20974735 20975022 -163313640 + AluJo SINE Alu 1 297 -15 1838 82 112 4 chr4 20975082 20975351 -163313311 - AluY SINE Alu -13 298 1 2034 151 74 3 chr4 20975473 20975837 -163312825 + MLT1B LTR MaLR 1 390 0 324 302 161 21 chr4 20975859 20976051 -163312611 + MIR SINE MIR 6 224 -38 286 267 137 56 chr4 20976091 20976252 -163312410 - MIR SINE MIR -12 250 77 837 101 8 23 chr4 20976285 20976414 -163312248 - FLAM_C SINE Alu -10 133 7 923 248 75 119 chr4 20977800 20978755 -163309907 + L1MC4 LINE L1 7130 8042 0 2079 100 3 3 chr4 20978766 20979056 -163309606 + AluSx SINE Alu 1 290 -22 213 132 0 0 chr4 20979056 20979094 -163309568 + (GGGGA)n Simple_repeat Simple_repeat 1 38 0 301 276 102 0 chr4 20979860 20979958 -163308704 - L1ME4a LINE L1 -49 6072 5965 2167 101 7 0 chr4 20980338 20980644 -163308018 - AluSq SINE Alu -5 308 1 834 136 0 0 chr4 20980667 20980785 -163307877 + FLAM_C SINE Alu 1 118 -15 1809 167 0 3 chr4 20981216 20981528 -163307134 - AluJb SINE Alu -1 311 1 740 309 13 4 chr4 20981576 20981809 -163306853 + MIR SINE MIR 2 236 -26 289 230 87 40 chr4 20982021 20982147 -163306515 + L1ME4a LINE L1 5938 6069 -52 195 264 136 13 chr4 20982302 20982393 -163306269 + MIR SINE MIR 40 143 -65 555 220 8 0 chr4 20982506 20982624 -163306038 + FLAM_A SINE Alu 1 119 -14 2336 91 0 3 chr4 20982690 20982999 -163305663 - AluSc SINE Alu -1 308 1 519 239 154 45 chr4 20983208 20983252 -163305410 + L1ME4a LINE L1 5626 5664 -457 1753 166 7 7 chr4 20983252 20983548 -163305114 + AluSx SINE Alu 1 296 -16 519 239 154 45 chr4 20983548 20983950 -163304712 + L1ME4a LINE L1 5664 6121 0 2145 110 0 3 chr4 20983974 20984282 -163304380 + AluSg SINE Alu 1 307 -3 1571 163 57 20 chr4 20984542 20984843 -163303819 + AluJo SINE Alu 1 312 0 1407 206 57 0 chr4 20984988 20985289 -163303373 - MER58B DNA MER1_type 0 341 24 213 154 31 138 chr4 20985307 20985372 -163303290 + MIR SINE MIR 16 73 -135 778 108 47 0 chr4 20986038 20986167 -163302495 + L1PB4 LINE L1 6015 6149 -7 351 333 152 16 chr4 20986517 20986757 -163301905 - MIR SINE MIR -2 260 13 25 0 0 0 chr4 20987201 20987226 -163301436 + GC_rich Low_complexity Low_complexity 1 25 0 25 31 0 0 chr4 20987244 20987276 -163301386 + GC_rich Low_complexity Low_complexity 1 32 0 269 132 0 19 chr4 20987653 20987706 -163300956 - L1MA4 LINE L1 -226 6074 6023 837 243 19 9 chr4 20987805 20988019 -163300643 - MER20 DNA MER1_type 0 219 4 374 246 305 21 chr4 20988263 20988450 -163300212 - MIR SINE MIR -9 253 14 281 206 44 0 chr4 20988642 20988710 -163299952 - MIR SINE MIR -6 256 186 957 176 64 21 chr4 20988950 20989138 -163299524 - AluJo SINE Alu -30 282 87 742 294 20 0 chr4 20990889 20991086 -163297576 - MIR SINE MIR -16 246 46 238 365 0 21 chr4 20991210 20991306 -163297356 + MIR SINE MIR 24 117 -145 244 256 117 88 chr4 20991842 20991932 -163296730 + L1MC4 LINE L1 7613 7710 -332 2032 202 116 19 chr4 20991932 20992517 -163296145 - LTR48B LTR ERV1 -2 642 1 244 256 117 88 chr4 20992517 20992563 -163296099 + L1MC4 LINE L1 7710 7753 -289 185 279 16 16 chr4 20993509 20993570 -163295092 - L2 LINE L2 -54 3218 3158 2300 103 0 0 chr4 20993576 20993887 -163294775 + AluSq SINE Alu 1 311 -2 236 284 55 39 chr4 20993928 20994055 -163294607 - MIR SINE MIR -27 235 107 366 225 0 24 chr4 20994532 20994616 -163294046 + MIR SINE MIR 67 149 -59 656 168 17 8 chr4 20994986 20995105 -163293557 - FLAM_C SINE Alu -13 120 1 22 0 0 0 chr4 20995125 20995147 -163293515 + AT_rich Low_complexity Low_complexity 1 22 0 308 239 82 60 chr4 20995230 20995354 -163293308 - HAL1 LINE L1 -203 2304 2181 473 274 164 34 chr4 20995354 20995737 -163292925 - L1MC4a LINE L1 -1927 5881 2117 1638 153 56 3 chr4 20995848 20996135 -163292527 + AluSx SINE Alu 1 302 -10 2713 164 39 2 chr4 20996655 20997112 -163291550 - MER101 LTR ERV1 0 474 1 202 294 128 46 chr4 20997190 20997299 -163291363 + MIR SINE MIR 141 258 -4 325 206 16 0 chr4 20997318 20997381 -163291281 - MIR SINE MIR -109 153 90 205 193 57 80 chr4 20997400 20997488 -163291174 - MIR SINE MIR -3 259 174 1836 136 4 4 chr4 20998300 20998580 -163290082 - AluJb SINE Alu 0 312 33 649 287 95 9 chr4 20999022 20999258 -163289404 - MIR SINE MIR -9 253 2 288 0 0 0 chr4 20999302 20999334 -163289328 + (TG)n Simple_repeat Simple_repeat 1 32 0 1136 147 4 101 chr4 20999823 21000061 -163288601 + AluJb SINE Alu 87 301 -11 522 281 30 0 chr4 21000168 21000335 -163288327 + L1ME LINE L1 5611 5782 -339 2066 118 0 45 chr4 21000451 21000764 -163287898 + AluJb SINE Alu 1 299 -13 24 0 0 0 chr4 21001031 21001055 -163287607 + AT_rich Low_complexity Low_complexity 1 24 0 198 143 0 0 chr4 21001061 21001096 -163287566 + (GA)n Simple_repeat Simple_repeat 2 36 0 2235 117 0 0 chr4 21001375 21001675 -163286987 + AluSx SINE Alu 1 300 -12 449 211 31 77 chr4 21002377 21002529 -163286133 + MIR SINE MIR 46 193 -63 304 149 90 0 chr4 21002752 21002819 -163285843 - MIR SINE MIR -3 259 187 310 26 0 0 chr4 21002825 21002863 -163285799 - MADE1 DNA Mariner -42 38 1 243 203 0 101 chr4 21002945 21003024 -163285638 - L2 LINE L2 -245 3027 2957 2383 100 0 0 chr4 21003071 21003370 -163285292 + AluSg SINE Alu 1 299 -11 1800 190 37 32 chr4 21003483 21003849 -163284813 + MLT2D LTR ERVL 5 375 -39 372 22 0 0 chr4 21003849 21003894 -163284768 + (CA)n Simple_repeat Simple_repeat 2 46 0 1800 190 37 32 chr4 21003894 21003933 -163284729 + MLT2D LTR ERVL 375 412 -2 551 204 0 0 chr4 21004034 21004137 -163284525 + U13 snRNA snRNA 1 103 -1 2118 124 14 0 chr4 21004162 21004452 -163284210 - AluSq SINE Alu -19 294 1 292 300 121 49 chr4 21004646 21004869 -163283793 + L3 LINE CR1 684 922 -655 221 331 58 25 chr4 21005014 21005135 -163283527 - L2 LINE L2 -783 2531 2407 189 132 0 0 chr4 21005907 21005945 -163282717 + (CAAAAA)n Simple_repeat Simple_repeat 2 39 0 240 293 0 12 chr4 21006486 21006568 -163282094 + L1MEc LINE L1 610 690 -5706 3473 238 114 18 chr4 21006619 21008718 -163279944 + L1MEc LINE L1 692 2956 -3259 422 317 48 35 chr4 21009294 21009524 -163279138 + LTR67 LTR ERVL 2 234 -323 232 186 23 0 chr4 21009573 21009616 -163279046 + MER3 DNA MER1_type 3 46 -163 1047 163 6 0 chr4 21009670 21009842 -163278820 + MER3 DNA MER1_type 37 209 0 600 236 156 5 chr4 21009889 21010088 -163278574 + LTR67 LTR ERVL 329 557 0 428 258 126 0 chr4 21010801 21010952 -163277710 + MIR SINE MIR 25 194 -68 2025 139 3 7 chr4 21011046 21011348 -163277314 + AluJb SINE Alu 3 303 -9 323 296 93 65 chr4 21011350 21011480 -163277182 - MIR SINE MIR 0 262 122 2453 91 0 0 chr4 21011480 21011788 -163276874 + AluSc SINE Alu 1 308 -1 323 296 93 65 chr4 21011788 21011873 -163276789 - MIR SINE MIR -140 122 41 325 276 43 61 chr4 21012307 21012470 -163276192 - MIR SINE MIR -70 192 33 193 235 26 150 chr4 21012601 21012754 -163275908 + L2 LINE L2 3138 3271 -1 367 239 23 0 chr4 21014416 21014504 -163274158 + MIR SINE MIR 64 153 -55 559 155 0 0 chr4 21014517 21014601 -163274061 + AluJ/FLAM SINE Alu 2 85 -227 1964 149 0 7 chr4 21014622 21014917 -163273745 - AluSq SINE Alu -20 293 1 855 144 8 0 chr4 21014931 21015056 -163273606 - AluJo SINE Alu -176 136 11 243 237 123 70 chr4 21015972 21016086 -163272576 + MIR SINE MIR 23 142 -120 265 305 53 0 chr4 21016096 21016191 -163272471 + L2 LINE L2 3160 3259 -13 2137 128 0 0 chr4 21016196 21016492 -163272170 + AluSx SINE Alu 5 300 -12 414 0 0 0 chr4 21016493 21016539 -163272123 + (TA)n Simple_repeat Simple_repeat 1 46 0 273 29 0 0 chr4 21016539 21016573 -163272089 + (TG)n Simple_repeat Simple_repeat 2 35 0 218 238 0 0 chr4 21016627 21016669 -163271993 + L2 LINE L2 3210 3251 -21 232 298 39 44 chr4 21017583 21017764 -163270898 - LTR16C LTR ERVL -31 460 281 251 235 44 15 chr4 21017764 21017832 -163270830 - L2 LINE L2 -559 2755 2686 2069 113 7 3 chr4 21017873 21018184 -163270478 + AluSq SINE Alu 1 312 0 1120 256 10 7 chr4 21018207 21018496 -163270166 + L1M4 LINE L1 3821 4110 -2036 530 269 68 32 chr4 21018574 21018793 -163269869 - L2 LINE L2 -843 2471 2245 206 303 145 64 chr4 21018793 21018900 -163269762 - L2 LINE L2 -1578 1736 1639 1829 164 7 17 chr4 21018900 21019029 -163269633 + AluJb SINE Alu 1 130 -182 2115 123 7 0 chr4 21019029 21019337 -163269325 + AluSg SINE Alu 1 310 0 1829 164 7 17 chr4 21019337 21019506 -163269156 + AluJb SINE Alu 130 296 -16 206 303 145 64 chr4 21019506 21020038 -163268624 - L2 LINE L2 -1675 1639 1045 317 252 47 9 chr4 21020052 21020159 -163268503 - L2 LINE L2 -2488 826 716 390 233 98 15 chr4 21020893 21021026 -163267636 + L2 LINE L2 3170 3313 0 197 303 133 36 chr4 21021345 21021510 -163267152 - MIR SINE MIR 0 262 82 297 318 63 91 chr4 21021585 21021837 -163266825 - L2 LINE L2 0 3272 3028 584 266 107 43 chr4 21022054 21022412 -163266250 + MLT1J2 LTR MaLR 70 438 -12 811 232 66 6 chr4 21022412 21022593 -163266069 - MER68 LTR ERV1 -2 560 369 304 244 0 26 chr4 21022932 21023010 -163265652 - L1MC4a LINE L1 -1903 5905 5830 2190 134 0 3 chr4 21023022 21023335 -163265327 + AluSx SINE Alu 1 312 0 1664 140 22 0 chr4 21023348 21023619 -163265043 + L1MA8 LINE L1 6015 6291 0 1741 171 13 10 chr4 21024170 21024475 -163264187 - AluJb SINE Alu -6 306 1 237 65 0 0 chr4 21024637 21024668 -163263994 + (TTTTA)n Simple_repeat Simple_repeat 4 34 0 1730 162 11 4 chr4 21024668 21024940 -163263722 - AluSx SINE Alu -38 274 1 446 231 172 0 chr4 21024965 21025099 -163263563 + MIR SINE MIR 96 252 -10 247 364 0 23 chr4 21025639 21025713 -163262949 - MIR SINE MIR -10 252 181 367 195 39 0 chr4 21025713 21025790 -163262872 - MADE1 DNA Mariner 0 80 1 247 364 0 23 chr4 21025790 21025844 -163262818 - MIR SINE MIR -81 181 127 213 295 51 0 chr4 21025876 21025954 -163262708 + MIR SINE MIR 65 146 -116 228 290 0 14 chr4 21026079 21026148 -163262514 - MIR SINE MIR -165 97 30 209 330 110 10 chr4 21026217 21026317 -163262345 - L2 LINE L2 -27 3245 3136 351 249 63 130 chr4 21026352 21026714 -163261948 + MLT1H LTR MaLR 39 376 -33 3029 159 18 25 chr4 21026783 21027337 -163261325 - MER44D DNA MER2_type 0 605 1 2077 261 107 14 chr4 21027409 21028205 -163260457 + L2 LINE L2 1591 2460 -854 1537 120 28 99 chr4 21028208 21028435 -163260227 + L1M3 LINE L1 5374 5579 -604 2202 127 0 0 chr4 21028435 21028743 -163259919 + AluSc SINE Alu 1 308 -1 1537 120 28 99 chr4 21028743 21028799 -163259863 + L1M3 LINE L1 5579 5637 -546 303 306 89 8 chr4 21028801 21028925 -163259737 + L2 LINE L2 3179 3312 -1 2501 69 3 3 chr4 21028932 21029236 -163259426 + AluY SINE Alu 1 304 -7 230 282 24 12 chr4 21029567 21029652 -163259010 + MER5A DNA MER1_type 65 150 -39 440 147 0 0 chr4 21031832 21031907 -163256755 + L1PB3 LINE L1 6073 6147 -7 291 104 0 0 chr4 21031941 21031989 -163256673 + (CA)n Simple_repeat Simple_repeat 1 48 0 531 238 50 12 chr4 21031989 21032149 -163256513 + L1ME4a LINE L1 5947 6112 -9 189 299 26 86 chr4 21032980 21033097 -163255565 + L2 LINE L2 3160 3269 -3 2390 77 0 3 chr4 21033756 21034053 -163254609 - AluY SINE Alu -15 296 1 1365 296 66 28 chr4 21034054 21034190 -163254472 - MLT1K LTR MaLR -3 585 456 183 42 0 0 chr4 21034190 21034214 -163254448 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2142 126 0 0 chr4 21034216 21034501 -163254161 - AluSq SINE Alu -28 285 1 1365 296 66 28 chr4 21034501 21034831 -163253831 - MLT1K LTR MaLR -132 456 98 303 245 13 86 chr4 21035128 21035253 -163253409 + MIR3 SINE MIR 18 132 -76 1789 131 40 96 chr4 21035253 21035650 -163253012 - THE1C LTR MaLR 0 375 1 303 245 13 86 chr4 21035650 21035675 -163252987 + MIR3 SINE MIR 132 157 -51 774 206 7 14 chr4 21035827 21035968 -163252694 + AluJo SINE Alu 3 142 -170 293 269 0 0 chr4 21035969 21036047 -163252615 + (ATG)n Simple_repeat Simple_repeat 1 78 0 997 127 0 14 chr4 21036085 21036227 -163252435 + AluJo SINE Alu 152 291 -21 24 0 0 0 chr4 21036570 21036594 -163252068 + AT_rich Low_complexity Low_complexity 1 24 0 15202 54 0 9 chr4 21036598 21038460 -163250202 + L1P LINE L1 8 1852 -4294 * 30680 34 86 3 chr4 21038455 21043176 -163245486 + L1PA4 LINE L1 1026 6155 0 26 30 0 0 chr4 21043199 21043232 -163245430 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr4 21043281 21043304 -163245358 + AT_rich Low_complexity Low_complexity 1 23 0 625 332 42 17 chr4 21043867 21044108 -163244554 - MIR SINE MIR -6 256 10 536 224 25 31 chr4 21044531 21044692 -163243970 - MLT1J LTR MaLR -313 198 39 2314 107 3 0 chr4 21044692 21044992 -163243670 + AluSq SINE Alu 1 301 -12 286 342 34 8 chr4 21045087 21045204 -163243458 - MIR SINE MIR -70 138 19 191 237 110 42 chr4 21045683 21045801 -163242861 - L2 LINE L2 -44 3269 3144 654 269 45 74 chr4 21045878 21046190 -163242472 + MLT1K LTR MaLR 124 426 -162 2285 139 68 12 chr4 21046503 21046912 -163241750 + MSTB1 LTR MaLR 1 432 0 474 246 20 96 chr4 21047319 21047385 -163241277 + MLT1J LTR MaLR 326 395 -116 2009 135 0 7 chr4 21047385 21047681 -163240981 - AluSx SINE Alu -14 298 5 474 246 20 96 chr4 21047681 21047813 -163240849 + MLT1J LTR MaLR 395 509 -2 299 222 16 0 chr4 21047824 21047887 -163240775 + L2 LINE L2 3189 3252 -20 2176 135 0 0 chr4 21047899 21048203 -163240459 + AluSx SINE Alu 1 304 -8 931 286 50 12 chr4 21048876 21049215 -163239447 - L2 LINE L2 -1 3312 2961 2425 86 3 0 chr4 21049241 21049545 -163239117 + AluSx SINE Alu 1 305 -7 822 222 10 24 chr4 21049549 21049756 -163238906 + L1MB1 LINE L1 5825 6028 -140 827 161 39 7 chr4 21049788 21049943 -163238719 + L1MB1 LINE L1 6007 6166 -2 387 89 0 0 chr4 21049943 21049999 -163238663 + (TA)n Simple_repeat Simple_repeat 2 57 0 900 224 152 13 chr4 21050015 21050252 -163238410 + AluY SINE Alu 1 270 -41 912 249 145 60 chr4 21050259 21050991 -163237671 + LTR1B LTR ERV1 33 826 0 468 269 130 4 chr4 21051070 21051308 -163237354 - L2 LINE L2 -424 2890 2623 1705 204 184 37 chr4 21051617 21052161 -163236501 - MLT1E3 LTR MaLR 0 624 1 446 0 19 0 chr4 21052291 21052345 -163236317 + (CA)n Simple_repeat Simple_repeat 1 55 0 1195 96 0 0 chr4 21052420 21052576 -163236086 + AluSg/x SINE Alu 154 309 -3 230 303 124 28 chr4 21053039 21053086 -163235576 + MIR3 SINE MIR 49 90 -118 959 326 10 59 chr4 21053086 21053574 -163235088 + LTR16B LTR ERVL 1 464 0 230 303 124 28 chr4 21053574 21053671 -163234991 + MIR3 SINE MIR 90 207 -1 2252 108 0 10 chr4 21053792 21054088 -163234574 - AluSx SINE Alu -19 293 1 2300 88 0 7 chr4 21054278 21054575 -163234087 + AluY SINE Alu 1 295 -16 2360 94 0 23 chr4 21054585 21054893 -163233769 + AluSx SINE Alu 1 301 -11 2095 114 7 20 chr4 21055348 21055469 -163233193 + AluSx SINE Alu 10 131 -181 2844 19 0 0 chr4 21055469 21055778 -163232884 + AluY SINE Alu 1 309 -2 2095 114 7 20 chr4 21055778 21055962 -163232700 + AluSx SINE Alu 131 311 -1 1876 167 0 10 chr4 21056335 21056646 -163232016 - AluJb SINE Alu -4 308 1 1416 207 13 26 chr4 21056657 21056962 -163231700 - AluJo SINE Alu -11 301 1 788 158 0 16 chr4 21057132 21057259 -163231403 + FLAM_C SINE Alu 4 128 -5 690 299 72 41 chr4 21057529 21058110 -163230552 - L1ME4a LINE L1 -56 6065 5467 953 217 58 0 chr4 21058305 21058512 -163230150 - MER20 DNA MER1_type 0 219 1 744 289 159 56 chr4 21058597 21058855 -163229807 + MLT1L LTR MaLR 21 251 -364 2312 106 3 0 chr4 21058855 21059158 -163229504 + AluSx SINE Alu 1 304 -8 744 289 159 56 chr4 21059158 21059432 -163229230 + MLT1L LTR MaLR 251 608 -7 396 0 0 0 chr4 21059653 21059697 -163228965 + (CA)n Simple_repeat Simple_repeat 1 44 0 214 196 0 22 chr4 21059772 21059818 -163228844 + A-rich Low_complexity Low_complexity 4 48 0 312 372 0 7 chr4 21060116 21060261 -163228401 + (TGGG)n Simple_repeat Simple_repeat 1 144 0 189 264 35 11 chr4 21061018 21061105 -163227557 + L2 LINE L2 3139 3227 -86 1718 184 35 111 chr4 21061478 21061957 -163226705 - LTR47B LTR ERVL 0 443 1 2311 108 3 9 chr4 21062099 21062414 -163226248 + AluSp SINE Alu 1 313 0 23 0 0 0 chr4 21062685 21062708 -163225954 + AT_rich Low_complexity Low_complexity 1 23 0 1574 190 54 0 chr4 21062709 21062988 -163225674 - AluJo SINE Alu -18 294 1 6087 84 15 1 chr4 21063097 21063905 -163224757 + L1PA11 LINE L1 5351 6169 -5 1080 202 22 101 chr4 21063900 21064257 -163224405 + L1MC5 LINE L1 6643 6971 -990 * 2569 214 39 82 chr4 21064278 21064481 -163224181 + L1MC5 LINE L1 6956 7166 -795 2091 128 7 0 chr4 21064481 21064770 -163223892 + AluSx SINE Alu 10 300 -12 2569 214 39 82 chr4 21064770 21065565 -163223097 + L1MC5 LINE L1 7166 7911 -50 436 231 32 39 chr4 21065753 21065909 -163222753 + L2 LINE L2 2231 2385 -929 288 278 103 0 chr4 21065902 21065999 -163222663 + MIR3 SINE MIR 62 168 -40 * 1368 134 140 32 chr4 21067006 21067321 -163221341 + MSTA LTR MaLR 1 398 -30 2144 109 36 13 chr4 21067321 21067625 -163221037 - AluSx SINE Alu -1 311 1 2256 106 0 19 chr4 21068014 21068326 -163220336 + AluSg SINE Alu 2 307 -3 581 153 14 10 chr4 21068825 21068965 -163219697 + MER20B DNA MER1_type 33 216 -3 949 184 69 56 chr4 21069042 21069073 -163219589 + MLT1B LTR MaLR 155 184 -206 186 43 0 0 chr4 21069073 21069096 -163219566 + (TC)n Simple_repeat Simple_repeat 2 24 0 949 184 69 56 chr4 21069096 21069297 -163219365 + MLT1B LTR MaLR 184 390 0 1922 108 24 0 chr4 21069391 21069642 -163219020 - AluSq SINE Alu -48 265 9 251 323 8 8 chr4 21069666 21069796 -163218866 + L2 LINE L2 1932 2061 -1253 225 0 0 0 chr4 21069849 21069874 -163218788 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 187 314 0 0 chr4 21069977 21070028 -163218634 + L2 LINE L2 3263 3313 0 192 375 0 0 chr4 21070054 21070118 -163218544 + L2 LINE L2 2217 2280 -1034 222 128 0 0 chr4 21071222 21071261 -163217401 + (CA)n Simple_repeat Simple_repeat 1 39 0 226 51 26 51 chr4 21072573 21072612 -163216050 + MER5A DNA MER1_type 39 76 -113 2076 131 13 3 chr4 21072612 21072910 -163215752 + AluJo SINE Alu 1 301 -11 28 48 0 0 chr4 21073228 21073270 -163215392 + AT_rich Low_complexity Low_complexity 1 42 0 8938 133 67 43 chr4 21073541 21075200 -163213462 - pTR5 LTR ERV1 0 2438 741 299 207 0 0 chr4 21075552 21075610 -163213052 - MER94 DNA DNA -76 58 1 1001 186 51 140 chr4 21075737 21076108 -163212554 - MER58B DNA MER1_type -1 340 3 2023 117 18 7 chr4 21076117 21076399 -163212263 - AluSx SINE Alu -22 290 6 185 200 0 0 chr4 21076585 21076615 -163212047 + L2 LINE L2 3224 3253 -19 2417 94 7 0 chr4 21076624 21076932 -163211730 - AluSp SINE Alu -3 310 1 226 210 202 48 chr4 21076959 21077083 -163211579 + L1ME LINE L1 5772 5914 -207 473 194 0 20 chr4 21077611 21077709 -163210953 - L2 LINE L2 -10 3303 3208 469 293 91 9 chr4 21078024 21078256 -163210406 - L2 LINE L2 -558 2756 2506 2256 93 0 7 chr4 21078266 21078595 -163210067 - AluSx SINE Alu 0 327 1 812 172 35 12 chr4 21078647 21078816 -163209846 - L1MB8 LINE L1 -2 6176 6004 963 161 180 9 chr4 21078841 21079063 -163209599 - L1MB8 LINE L1 -402 5776 5517 231 188 62 0 chr4 21079065 21079129 -163209533 - L2 LINE L2 -608 2706 2639 220 315 206 0 chr4 21079810 21079902 -163208760 - L2 LINE L2 -245 3068 2958 192 307 0 57 chr4 21080920 21081008 -163207654 + MIR SINE MIR 49 131 -77 2440 91 3 0 chr4 21081399 21081706 -163206956 - AluSp SINE Alu -5 308 1 1639 163 36 4 chr4 21081924 21082230 -163206432 + AluJb SINE Alu 1 315 0 309 191 0 29 chr4 21082439 21082507 -163206155 - MER5B DNA MER1_type 0 178 113 553 208 57 158 chr4 21082575 21082817 -163205845 - L1MC4 LINE L1 -5 8037 7772 1516 85 0 0 chr4 21082817 21083005 -163205657 - AluSc SINE Alu -2 307 120 553 208 57 158 chr4 21083005 21083023 -163205639 - L1MC4 LINE L1 -270 7772 7754 2108 110 0 7 chr4 21083023 21083314 -163205348 - AluSc SINE Alu -20 289 1 553 208 57 158 chr4 21083314 21083509 -163205153 - L1MC4 LINE L1 -288 7754 7627 1712 160 14 0 chr4 21083540 21083834 -163204828 + L1PB4 LINE L1 5858 6155 -1 223 264 69 14 chr4 21084116 21084188 -163204474 - L2 LINE L2 -8 3264 3189 2365 85 0 10 chr4 21084226 21084521 -163204141 - AluSp SINE Alu -21 292 1 1366 235 128 42 chr4 21084759 21085330 -163203332 + L1ME2 LINE L1 5546 6334 0 633 290 74 37 chr4 21085577 21085662 -163203000 + L1MEc LINE L1 1259 1339 -1237 1534 145 118 12 chr4 21085662 21085917 -163202745 + AluJo SINE Alu 18 299 -13 633 290 74 37 chr4 21085917 21086326 -163202336 + L1MEc LINE L1 1339 1835 -741 25 65 0 0 chr4 21086349 21086395 -163202267 + AT_rich Low_complexity Low_complexity 1 46 0 1574 157 36 39 chr4 21086415 21086720 -163201942 + AluJo SINE Alu 9 312 0 217 281 207 0 chr4 21087283 21087365 -163201297 + L2 LINE L2 3214 3312 -1 218 365 59 0 chr4 21087412 21087497 -163201165 + L2 LINE L2 3205 3294 -19 201 213 25 113 chr4 21088510 21088590 -163200072 + L2 LINE L2 3200 3272 0 191 327 71 26 chr4 21090110 21090223 -163198439 - MIR3 SINE MIR -78 130 13 1069 235 58 8 chr4 21090772 21090952 -163197710 + MER20B DNA MER1_type 283 481 -302 2132 147 0 0 chr4 21090952 21091258 -163197404 - AluSx SINE Alu -6 306 1 1069 235 58 8 chr4 21091258 21091337 -163197325 + MER20B DNA MER1_type 481 555 -228 * 1975 161 24 9 chr4 21091325 21091660 -163197002 + MER2 DNA MER2_type 6 345 0 236 196 178 56 chr4 21091721 21091828 -163196834 + MER20B DNA MER1_type 664 783 0 312 238 191 36 chr4 21092177 21092345 -163196317 - MIR SINE MIR -11 251 57 787 156 15 30 chr4 21092447 21092582 -163196080 - AluJo SINE Alu -177 135 3 2092 95 42 18 chr4 21092874 21093159 -163195503 - AluSx SINE Alu -20 292 1 1912 125 62 0 chr4 21093164 21093452 -163195210 - AluSx SINE Alu -6 306 1 957 171 0 0 chr4 21094006 21094158 -163194504 + FRAM SINE Alu 1 152 -14 207 0 0 0 chr4 21094161 21094184 -163194478 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 290 292 31 10 chr4 21095293 21095389 -163193273 + L2 LINE L2 2955 3052 -220 211 313 112 15 chr4 21096047 21096181 -163192481 - MER5A DNA MER1_type -41 148 2 681 252 102 18 chr4 21096398 21096731 -163191931 - Charlie7 DNA MER1_type -240 2372 2012 405 267 153 35 chr4 21097457 21097659 -163191003 - MLT1J2 LTR MaLR -157 293 68 1685 109 0 9 chr4 21097715 21097944 -163190718 - AluSc SINE Alu -19 290 64 216 0 0 0 chr4 21098015 21098039 -163190623 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1345 171 116 27 chr4 21098042 21098300 -163190362 - AluJo SINE Alu -31 281 1 485 211 105 9 chr4 21098370 21098484 -163190178 + L2 LINE L2 3189 3313 0 26 0 0 0 chr4 21098684 21098710 -163189952 + AT_rich Low_complexity Low_complexity 1 26 0 1205 223 119 52 chr4 21099092 21099275 -163189387 + L1ME3 LINE L1 5007 5176 -986 2049 119 3 55 chr4 21099275 21099586 -163189076 + AluSx SINE Alu 1 295 -17 1205 223 119 52 chr4 21099586 21099665 -163188997 + L1ME3 LINE L1 5176 5248 -914 645 191 15 44 chr4 21099665 21099801 -163188861 + FLAM_C SINE Alu 1 132 -1 1205 223 119 52 chr4 21099801 21099932 -163188730 + L1ME3 LINE L1 5248 5369 -793 317 61 0 20 chr4 21099932 21099981 -163188681 + (TTAAA)n Simple_repeat Simple_repeat 3 50 0 1205 223 119 52 chr4 21099981 21100134 -163188528 + L1ME3 LINE L1 5369 5510 -652 7679 26 10 1 chr4 21100134 21101150 -163187512 + L1PA4 LINE L1 5131 6154 -1 1205 223 119 52 chr4 21101150 21101691 -163186971 + L1ME3 LINE L1 5510 6162 0 1956 115 97 6 chr4 21101993 21102324 -163186338 - MER46B DNA MER2_type 0 236 1 2236 245 166 17 chr4 21102772 21103695 -163184967 - HAL1 LINE L1 -698 1809 750 621 319 125 12 chr4 21103759 21104095 -163184567 - HAL1 LINE L1 -1873 634 261 657 172 91 131 chr4 21104101 21104258 -163184404 + Charlie7 DNA MER1_type 1631 1772 -840 1996 115 11 4 chr4 21104258 21104536 -163184126 + AluSc SINE Alu 1 280 -29 657 172 91 131 chr4 21104536 21104675 -163183987 + Charlie7 DNA MER1_type 1772 1915 -697 22 0 0 0 chr4 21104714 21104736 -163183926 + AT_rich Low_complexity Low_complexity 1 22 0 781 214 0 19 chr4 21104805 21104959 -163183703 - FRAM SINE Alu -15 151 1 477 154 282 13 chr4 21105078 21105227 -163183435 - MER53 DNA DNA 0 189 1 201 74 0 0 chr4 21106134 21106161 -163182501 + (T)n Simple_repeat Simple_repeat 1 27 0 1536 137 49 8 chr4 21106175 21106438 -163182224 + AluJb SINE Alu 24 297 -15 313 276 13 0 chr4 21107104 21107180 -163181482 + L3 LINE CR1 1244 1320 -257 2397 70 20 0 chr4 21107697 21107995 -163180667 + AluSp SINE Alu 1 304 -9 2209 102 7 3 chr4 21108966 21109259 -163179403 - AluSx SINE Alu -18 294 1 2234 69 4 0 chr4 21109677 21109953 -163178709 + AluY SINE Alu 27 303 -8 189 74 0 0 chr4 21110470 21110497 -163178165 + (A)n Simple_repeat Simple_repeat 1 27 0 2153 129 0 0 chr4 21110860 21111154 -163177508 - AluSx SINE Alu -18 294 1 180 0 0 0 chr4 21112914 21112934 -163175728 + (T)n Simple_repeat Simple_repeat 1 20 0 277 259 168 0 chr4 21113139 21113270 -163175392 + L1ME LINE L1 3681 3833 -2313 1790 150 3 18 chr4 21113509 21113795 -163174867 + AluJo SINE Alu 1 282 -30 502 263 129 18 chr4 21114060 21114231 -163174431 - MIR SINE MIR -28 234 45 408 299 124 25 chr4 21114409 21114813 -163173849 + L1ME LINE L1 4509 4952 -1194 281 302 77 6 chr4 21114919 21115088 -163173574 + L1ME LINE L1 4988 5168 -978 336 268 119 49 chr4 21115206 21115420 -163173242 + L1ME LINE L1 5433 5660 -699 247 150 0 0 chr4 21115766 21115806 -163172856 + L2 LINE L2 3214 3253 -19 183 42 0 0 chr4 21116429 21116453 -163172209 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2357 77 3 3 chr4 21116576 21116876 -163171786 + AluSx SINE Alu 1 300 -12 231 137 118 0 chr4 21116974 21117025 -163171637 + L1ME LINE L1 5756 5812 -350 479 221 140 0 chr4 21117025 21117161 -163171501 + MIR SINE MIR 108 262 0 306 209 55 33 chr4 21117457 21117548 -163171114 - MER34 LTR ERV1 0 542 450 906 219 145 37 chr4 21117651 21117975 -163170687 - MER34C LTR ERV1 -226 359 1 23 54 0 0 chr4 21119027 21119064 -163169598 + GC_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr4 21121230 21121252 -163167410 + AT_rich Low_complexity Low_complexity 1 22 0 403 278 83 89 chr4 21121315 21121642 -163167020 - L1M4 LINE L1 -762 5384 5060 339 118 430 21 chr4 21122151 21122244 -163166418 + FLAM_C SINE Alu 1 131 -2 1089 178 105 40 chr4 21122326 21122573 -163166089 - AluJo SINE Alu -49 263 1 2094 133 3 0 chr4 21123367 21123653 -163165009 - AluSx SINE Alu -25 287 1 2127 143 12 12 chr4 21123917 21124252 -163164410 - MER1B DNA MER1_type -1 338 4 2076 75 75 0 chr4 21124682 21124947 -163163715 + AluSc SINE Alu 1 285 -24 814 213 129 52 chr4 21126202 21126512 -163162150 - MER58B DNA MER1_type -4 337 4 408 232 139 60 chr4 21126901 21127203 -163161459 - L1MC4a LINE L1 -1902 5906 5581 2468 68 0 0 chr4 21127233 21127529 -163161133 - AluSc SINE Alu -13 296 1 25 0 0 0 chr4 21127885 21127910 -163160752 + AT_rich Low_complexity Low_complexity 1 25 0 2464 76 0 3 chr4 21128149 21128453 -163160209 + AluY SINE Alu 1 303 -8 2031 134 3 10 chr4 21129287 21129593 -163159069 - AluSq SINE Alu -8 305 2 2173 97 13 10 chr4 21130020 21130319 -163158343 - AluSg1 SINE Alu -9 300 1 288 167 19 19 chr4 21130440 21130494 -163158168 - Tigger5 DNA MER2_type -2269 54 1 293 238 158 20 chr4 21131928 21132029 -163156633 + MIR SINE MIR 50 164 -98 461 290 83 10 chr4 21132175 21132368 -163156294 - L3 LINE CR1 -3 1574 1368 763 263 129 4 chr4 21134668 21134900 -163153762 - MIR SINE MIR -1 261 1 926 323 145 24 chr4 21134918 21135589 -163153073 - L2 LINE L2 -339 2975 2224 1969 153 17 0 chr4 21135635 21135930 -163152732 - AluSx SINE Alu -12 300 1 200 194 0 0 chr4 21135943 21135979 -163152683 + MIR SINE MIR 53 88 -174 201 149 191 0 chr4 21136356 21136403 -163152259 + MIR SINE MIR 152 207 -55 21 0 0 0 chr4 21136591 21136612 -163152050 + AT_rich Low_complexity Low_complexity 1 21 0 886 141 105 144 chr4 21136692 21137005 -163151657 - MER33 DNA MER1_type -14 310 10 328 276 155 17 chr4 21137570 21137686 -163150976 - L2 LINE L2 -2 3270 3139 910 198 71 89 chr4 21137855 21137942 -163150720 + MER33 DNA MER1_type 7 94 -2491 2017 142 10 3 chr4 21137942 21138251 -163150411 + AluJb SINE Alu 1 311 -1 910 198 71 89 chr4 21138251 21138487 -163150175 + MER33 DNA MER1_type 94 324 0 286 348 67 43 chr4 21138492 21138702 -163149960 - L2 LINE L2 -424 2890 2676 1059 283 99 33 chr4 21139157 21139724 -163148938 - L2 LINE L2 -2 3311 2710 1322 189 129 7 chr4 21139749 21140051 -163148611 - MER58B DNA MER1_type -1 340 2 1474 274 95 36 chr4 21140059 21140724 -163147938 - L2 LINE L2 -650 2664 1961 1231 131 0 6 chr4 21140931 21141107 -163147555 + AluSg SINE Alu 13 187 -123 1391 114 10 0 chr4 21141107 21141300 -163147362 + AluSp SINE Alu 101 295 -18 234 0 0 0 chr4 21141315 21141341 -163147321 + (TTG)n Simple_repeat Simple_repeat 2 27 0 21 57 0 0 chr4 21141385 21141420 -163147242 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr4 21141452 21141482 -163147180 + AT_rich Low_complexity Low_complexity 1 30 0 26 50 0 0 chr4 21141937 21141977 -163146685 + AT_rich Low_complexity Low_complexity 1 40 0 857 199 23 23 chr4 21142420 21142636 -163146026 - L1PA2 LINE L1 -4 6151 5936 22 56 0 0 chr4 21142662 21142698 -163145964 + AT_rich Low_complexity Low_complexity 1 36 0 4034 183 61 21 chr4 21143012 21143043 -163145619 - L1MB5 LINE L1 -8 6166 6138 1688 144 58 0 chr4 21143043 21143321 -163145341 - AluJo SINE Alu -18 294 1 4034 183 61 21 chr4 21143321 21144488 -163144174 - L1MB5 LINE L1 -36 6138 4922 185 301 66 52 chr4 21146545 21146681 -163141981 - L2 LINE L2 -491 2823 2686 667 289 63 57 chr4 21146938 21147305 -163141357 - LTR16A LTR ERVL -58 392 24 249 279 78 26 chr4 21149047 21149201 -163139461 - L1ME4a LINE L1 -4 6117 5956 247 247 49 25 chr4 21151469 21151550 -163137112 + MER5A DNA MER1_type 100 182 -7 413 305 111 22 chr4 21154092 21154318 -163134344 - MIR SINE MIR -7 255 5 22 0 0 0 chr4 21155425 21155447 -163133215 + AT_rich Low_complexity Low_complexity 1 22 0 1214 144 0 6 chr4 21156192 21156373 -163132289 - AluJo SINE Alu -25 287 108 9241 44 2 0 chr4 21156375 21157500 -163131162 + L1P LINE L1 7 1133 -5013 7594 26 5 0 chr4 21157500 21159121 -163129541 + L1PA3 LINE L1 4531 6155 0 891 276 85 13 chr4 21159289 21159797 -163128865 - L1MC4a LINE L1 -344 5822 5348 326 252 78 40 chr4 21160138 21160283 -163128379 + MIR SINE MIR 45 192 -60 187 289 0 0 chr4 21160831 21160876 -163127786 - L2 LINE L2 -18 3254 3210 207 0 0 0 chr4 21160879 21160902 -163127760 + (T)n Simple_repeat Simple_repeat 1 23 0 264 246 18 0 chr4 21160934 21160991 -163127671 - MIR SINE MIR -83 125 68 284 322 199 7 chr4 21161975 21162121 -163126541 + MIR SINE MIR 46 219 -43 229 290 0 14 chr4 21162128 21162197 -163126465 + MIR SINE MIR 195 262 0 263 330 31 10 chr4 21162661 21162758 -163125904 + MIR SINE MIR 8 106 -156 468 231 91 28 chr4 21163573 21163716 -163124946 + MLT1H LTR MaLR 382 533 -16 632 328 138 32 chr4 21163742 21164055 -163124607 + L2 LINE L2 1640 1918 -1396 1174 203 132 26 chr4 21164055 21164404 -163124258 + MLT1B LTR MaLR 1 386 -4 632 328 138 32 chr4 21164404 21164627 -163124035 + L2 LINE L2 1918 2233 -1081 278 314 181 25 chr4 21164649 21164853 -163123809 + L2 LINE L2 3028 3263 -50 244 220 17 0 chr4 21164865 21164924 -163123738 + L1MEc LINE L1 10 69 -6327 582 270 128 75 chr4 21164944 21165344 -163123318 + L1MEc LINE L1 216 636 -5760 463 221 42 0 chr4 21165347 21165442 -163123220 - MER20 DNA MER1_type 0 219 121 885 234 43 0 chr4 21165442 21165626 -163123036 - MER20 DNA MER1_type -27 192 1 2723 279 65 13 chr4 21165641 21166272 -163122390 + L1MEc LINE L1 647 1244 -5152 2055 94 17 28 chr4 21166272 21166587 -163122075 + AluSp SINE Alu 1 312 0 2723 279 65 13 chr4 21166587 21166842 -163121820 + L1MEc LINE L1 1244 1484 -4912 2031 172 17 0 chr4 21166842 21167197 -163121465 + MER47A DNA MER2_type 4 364 -2 2723 279 65 13 chr4 21167197 21167575 -163121087 + L1MEc LINE L1 1484 1979 -4417 * 5416 139 59 41 chr4 21167573 21168052 -163120610 + L1PA15 LINE L1 4276 4745 -1420 2149 124 86 12 chr4 21168052 21168391 -163120271 - THE1B LTR MaLR 0 364 1 11801 83 9 5 chr4 21168391 21169964 -163118698 - THE1B-int LTR MaLR 0 1580 1 2064 135 72 26 chr4 21169964 21170312 -163118350 - THE1B LTR MaLR 0 364 1 5416 139 59 41 chr4 21170312 21170863 -163117799 + L1PA15 LINE L1 4745 5284 -881 2188 119 0 0 chr4 21170863 21171157 -163117505 + AluSx SINE Alu 1 294 -18 5416 139 59 41 chr4 21171157 21171973 -163116689 + L1PA15 LINE L1 5284 6161 -4 2416 239 57 23 chr4 21171985 21172063 -163116599 + L1MEc LINE L1 1995 2069 -4146 1576 160 86 0 chr4 21172063 21172331 -163116331 - AluJb SINE Alu -21 291 1 2416 239 57 23 chr4 21172331 21173208 -163115454 + L1MEc LINE L1 2069 2948 -3267 772 140 9 0 chr4 21173208 21173322 -163115340 - FLAM_C SINE Alu -28 115 1 679 194 26 0 chr4 21173330 21173485 -163115177 + L1MEc LINE L1 2946 3104 -3111 616 166 191 0 chr4 21173523 21173680 -163114982 + MER5A DNA MER1_type 1 187 -2 488 320 77 78 chr4 21173704 21174322 -163114340 + L2 LINE L2 2652 3271 -1 926 200 43 11 chr4 21175147 21175332 -163113330 - MER58A DNA MER1_type -3 221 31 857 294 148 46 chr4 21176703 21177664 -163110998 + L2 LINE L2 1293 2351 -963 429 169 0 0 chr4 21178007 21178072 -163110590 - AluJ SINE Alu -52 260 196 398 173 13 38 chr4 21178072 21178168 -163110494 - AluJo SINE Alu -144 158 86 242 298 23 76 chr4 21178211 21178342 -163110320 + L2 LINE L2 2990 3113 -159 213 191 0 64 chr4 21178576 21178623 -163110039 + L2 LINE L2 3261 3304 -9 23 97 0 0 chr4 21178984 21179056 -163109606 + AT_rich Low_complexity Low_complexity 1 72 0 1424 104 25 67 chr4 21180145 21180385 -163108277 + MER30 DNA MER1_type 1 230 0 24 0 0 0 chr4 21180942 21180966 -163107696 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr4 21186597 21186625 -163102037 + AT_rich Low_complexity Low_complexity 1 28 0 194 33 67 0 chr4 21188428 21188458 -163100204 + T-rich Low_complexity Low_complexity 2 33 0 22 0 0 0 chr4 21188988 21189010 -163099652 + AT_rich Low_complexity Low_complexity 1 22 0 36 0 0 0 chr4 21190760 21190796 -163097866 + AT_rich Low_complexity Low_complexity 1 36 0 309 174 0 0 chr4 21191463 21191532 -163097130 + (CA)n Simple_repeat Simple_repeat 2 70 0 22 56 0 0 chr4 21193120 21193156 -163095506 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr4 21193551 21193572 -163095090 + AT_rich Low_complexity Low_complexity 1 21 0 30 0 0 0 chr4 21193851 21193881 -163094781 + AT_rich Low_complexity Low_complexity 1 30 0 555 277 69 66 chr4 21194992 21195295 -163093367 - L2 LINE L2 -9 3304 3001 224 189 66 123 chr4 21195295 21195401 -163093261 + L2 LINE L2 3118 3217 -96 2349 84 14 0 chr4 21195402 21195699 -163092963 - AluSp SINE Alu -12 301 1 220 216 0 20 chr4 21195829 21195880 -163092782 + (TATG)n Simple_repeat Simple_repeat 2 51 0 3172 115 8 0 chr4 21195882 21196353 -163092309 - L1MC1 LINE L1 -421 5912 5438 459 181 0 0 chr4 21196669 21196752 -163091910 - L1MC/D LINE L1 -647 5686 5604 1675 143 11 29 chr4 21196775 21197055 -163091607 - MER1B DNA MER1_type -64 275 1 209 244 0 115 chr4 21197140 21197218 -163091444 - MIR SINE MIR -21 241 173 460 236 9 0 chr4 21197228 21197338 -163091324 - L1MC4 LINE L1 0 8042 7932 905 154 0 0 chr4 21197338 21197474 -163091188 + AluJo SINE Alu 1 136 -176 31 0 0 0 chr4 21197474 21197505 -163091157 + AT_rich Low_complexity Low_complexity 1 31 0 3643 219 69 31 chr4 21197564 21197964 -163090698 - L1MC4 LINE L1 -122 7920 7536 2536 43 3 0 chr4 21197964 21198265 -163090397 - AluY SINE Alu -9 302 1 3643 219 69 31 chr4 21198265 21198912 -163089750 - L1MC4 LINE L1 -506 7536 6834 193 241 0 93 chr4 21198961 21199015 -163089647 - MIR SINE MIR -96 166 118 1642 165 20 35 chr4 21199570 21199916 -163088746 - L1MB8 LINE L1 -1 6177 5837 2322 73 0 30 chr4 21199935 21200238 -163088424 - AluY SINE Alu -17 294 1 363 252 52 17 chr4 21200864 21200979 -163087683 - L1MC5 LINE L1 -60 7901 7783 279 330 165 11 chr4 21201078 21201266 -163087396 - L2 LINE L2 -9 3263 3047 2007 93 54 0 chr4 21201307 21201586 -163087076 + AluSp SINE Alu 1 294 -19 383 141 77 0 chr4 21202727 21202809 -163085853 + MLT1B LTR MaLR 2 90 -300 1042 99 13 0 chr4 21202810 21202962 -163085700 - AluSg/x SINE Alu -15 295 142 1139 194 12 70 chr4 21202974 21203164 -163085498 + MSTB LTR MaLR 91 290 -136 2031 104 4 4 chr4 21203164 21203444 -163085218 + AluSc SINE Alu 1 280 -29 221 0 35 0 chr4 21203447 21203476 -163085186 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1139 194 12 70 chr4 21203476 21203519 -163085143 + MSTB LTR MaLR 292 314 -112 2003 154 0 0 chr4 21203519 21203831 -163084831 - AluSx SINE Alu 0 312 1 1139 194 12 70 chr4 21203831 21203850 -163084812 + MSTB LTR MaLR 314 333 -93 604 142 7 20 chr4 21203863 21203973 -163084689 + MSTB1 LTR MaLR 249 432 0 1000 107 94 0 chr4 21203973 21204122 -163084540 + MLT1B LTR MaLR 228 390 0 247 235 15 44 chr4 21204299 21204367 -163084295 - L2 LINE L2 -990 2324 2259 229 154 0 0 chr4 21204419 21204458 -163084204 + MIR SINE MIR 110 148 -114 1610 146 0 0 chr4 21204460 21204713 -163083949 + AluSx SINE Alu 1 253 -59 43 0 0 0 chr4 21204830 21204873 -163083789 + AT_rich Low_complexity Low_complexity 1 43 0 198 258 0 76 chr4 21205519 21205585 -163083077 + MIR3 SINE MIR 148 208 0 2400 41 7 0 chr4 21205721 21206013 -163082649 + AluY SINE Alu 1 294 -17 1922 151 3 0 chr4 21206193 21206504 -163082158 - AluJb SINE Alu 0 312 1 232 241 0 19 chr4 21206752 21206806 -163081856 + MER5B DNA MER1_type 1 53 -125 2198 106 0 0 chr4 21207324 21207660 -163081002 + AluSc SINE Alu 3 338 0 502 145 0 24 chr4 21207753 21207836 -163080826 - AluJo SINE Alu -16 296 216 961 170 0 6 chr4 21207837 21208002 -163080660 - AluJo SINE Alu -148 164 1 2159 125 0 0 chr4 21209033 21209345 -163079317 + AluSx SINE Alu 1 312 0 1520 178 22 47 chr4 21209368 21209689 -163078973 + L1MD2 LINE L1 5595 5907 -452 843 104 0 0 chr4 21209689 21209804 -163078858 + AluSg/x SINE Alu 163 277 -35 953 231 64 8 chr4 21209807 21210041 -163078621 + L1MD2 LINE L1 5896 6142 -217 389 233 33 67 chr4 21210046 21210169 -163078493 + L1MD2 LINE L1 6199 6325 -34 216 97 0 0 chr4 21210169 21210200 -163078462 + (TA)n Simple_repeat Simple_repeat 1 31 0 2234 73 0 54 chr4 21210200 21210516 -163078146 - AluSg SINE Alu -11 299 1 389 233 33 67 chr4 21210516 21210541 -163078121 + L1MD2 LINE L1 6323 6343 -16 1928 142 13 10 chr4 21210595 21210906 -163077756 + AluSx SINE Alu 1 312 0 810 293 81 66 chr4 21210938 21211800 -163076862 + L2 LINE L2 2213 3271 -1 442 243 29 19 chr4 21211923 21212026 -163076636 + L2 LINE L2 3210 3313 0 1074 272 35 80 chr4 21212247 21212668 -163075994 + HAL1 LINE L1 427 813 -1694 814 133 16 85 chr4 21212668 21212856 -163075806 - L1PA16 LINE L1 0 6166 5992 1074 272 35 80 chr4 21212856 21213056 -163075606 + HAL1 LINE L1 813 1020 -1487 1961 123 3 10 chr4 21213171 21213473 -163075189 + AluSx SINE Alu 13 312 0 1630 192 0 19 chr4 21213583 21213891 -163074771 - AluJo SINE Alu -10 302 1 1073 127 66 28 chr4 21214305 21214517 -163074145 + L1PA15 LINE L1 5935 6154 -11 294 83 0 0 chr4 21215230 21215266 -163073396 - U2 snRNA snRNA -152 36 1 300 321 36 9 chr4 21215537 21215649 -163073013 + MIR SINE MIR 8 122 -140 576 324 25 12 chr4 21215659 21215900 -163072762 - MLT1J LTR MaLR -10 501 258 728 263 132 18 chr4 21216023 21216304 -163072358 - L2 LINE L2 -2 3311 2999 818 206 0 7 chr4 21216401 21216547 -163072115 - FRAM SINE Alu -31 145 1 290 142 113 142 chr4 21216619 21216725 -163071937 + MLT1J LTR MaLR 155 257 -254 2023 118 0 7 chr4 21216849 21217138 -163071524 + AluSx SINE Alu 13 299 -13 1976 123 7 0 chr4 21217184 21217484 -163071178 + AluSp SINE Alu 1 302 -11 760 239 0 0 chr4 21218213 21218372 -163070290 + MER70-int LTR ERVL 421 579 -4444 * 5102 238 41 21 chr4 21218368 21219765 -163068897 + MER70-int LTR ERVL 1808 3879 -1651 1060 122 0 0 chr4 21219768 21219916 -163068746 - AluSp SINE Alu -19 294 147 3695 211 27 23 chr4 21219918 21220237 -163068425 + MER70-int LTR ERVL 2842 3158 -1865 273 29 0 0 chr4 21220237 21220271 -163068391 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3695 211 27 23 chr4 21220271 21220739 -163067923 + MER70-int LTR ERVL 3158 3632 -1391 2102 116 0 3 chr4 21221010 21221313 -163067349 - AluSx SINE Alu -6 306 5 503 277 57 50 chr4 21222290 21222673 -163065989 + MER70-int LTR ERVL 4471 4856 -167 2791 129 21 46 chr4 21223330 21223809 -163064853 - LTR24 LTR ERV1 0 467 1 314 291 58 0 chr4 21223835 21223921 -163064741 + MLT1J LTR MaLR 323 413 -98 2481 55 3 0 chr4 21223959 21224267 -163064395 - AluY SINE Alu -2 309 1 2046 109 10 3 chr4 21224267 21224569 -163064093 - AluSx SINE Alu -8 304 1 1560 154 0 29 chr4 21224657 21224937 -163063725 + AluJb SINE Alu 1 272 -40 1294 92 0 6 chr4 21224937 21225110 -163063552 - AluSp SINE Alu -141 172 1 448 126 57 151 chr4 21225435 21225498 -163063164 - LTR37A LTR ERV1 0 426 359 1812 142 10 0 chr4 21225498 21225775 -163062887 + AluSx SINE Alu 3 285 -27 198 0 0 0 chr4 21225775 21225797 -163062865 + (CA)n Simple_repeat Simple_repeat 1 22 0 1812 142 10 0 chr4 21225797 21225814 -163062848 + AluSx SINE Alu 285 300 -12 448 126 57 151 chr4 21225814 21225909 -163062753 - LTR37A LTR ERV1 -67 359 283 841 135 0 43 chr4 21225921 21226023 -163062639 + AluJ SINE Alu 2 98 -214 3932 130 29 8 chr4 21226023 21226654 -163062008 - LTR9B LTR ERV1 0 644 1 841 135 0 43 chr4 21226654 21226692 -163061970 + AluJ SINE Alu 98 136 -176 1017 167 6 0 chr4 21226692 21226854 -163061808 + AluJ SINE Alu 137 299 -3 678 191 57 127 chr4 21226856 21227101 -163061561 - LTR37A LTR ERV1 -148 278 56 1578 169 43 0 chr4 21227101 21227223 -163061439 + AluJo SINE Alu 1 116 -196 201 74 0 0 chr4 21227223 21227250 -163061412 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1578 169 43 0 chr4 21227250 21227405 -163061257 + AluJo SINE Alu 116 290 -22 678 191 57 127 chr4 21227405 21227458 -163061204 - LTR37A LTR ERV1 -370 56 1 189 160 43 160 chr4 21227857 21227951 -163060711 - L2 LINE L2 -4 3268 3186 279 137 11 158 chr4 21227990 21228036 -163060626 + LTR8A LTR ERV1 1 28 -699 2061 97 3 16 chr4 21228036 21228347 -163060315 + AluSc SINE Alu 1 307 -2 279 137 11 158 chr4 21228347 21228395 -163060267 + LTR8A LTR ERV1 28 81 -646 198 0 0 0 chr4 21228415 21228437 -163060225 + (CTG)n Simple_repeat Simple_repeat 2 23 0 2131 105 0 16 chr4 21228437 21228615 -163060047 - AluSx SINE Alu -2 310 138 2317 71 0 16 chr4 21228615 21228925 -163059737 - AluY SINE Alu -5 306 2 2131 105 0 16 chr4 21228925 21229061 -163059601 - AluSx SINE Alu -174 138 1 1252 194 14 9 chr4 21229061 21229278 -163059384 + LTR8 LTR ERV1 474 691 0 190 277 64 21 chr4 21229316 21229410 -163059252 - L2 LINE L2 -181 3091 2994 1349 262 51 41 chr4 21229520 21229900 -163058762 + MER34 LTR ERV1 26 401 -141 261 0 0 0 chr4 21229900 21229929 -163058733 + (TG)n Simple_repeat Simple_repeat 2 30 0 1349 262 51 41 chr4 21229929 21229958 -163058704 + MER34 LTR ERV1 401 428 -114 1859 145 0 7 chr4 21229958 21230248 -163058414 - AluJb SINE Alu -24 288 1 1349 262 51 41 chr4 21230248 21230349 -163058313 + MER34 LTR ERV1 428 542 0 1447 178 31 21 chr4 21231133 21231419 -163057243 - AluJb SINE Alu -23 289 1 2038 114 10 0 chr4 21231526 21231825 -163056837 + AluSx SINE Alu 1 302 -10 24 0 0 0 chr4 21231857 21231881 -163056781 + AT_rich Low_complexity Low_complexity 1 24 0 3171 116 38 41 chr4 21231905 21232438 -163056224 + LTR26B LTR ERV1 1 531 0 1912 113 0 38 chr4 21232510 21232644 -163056018 + AluSg SINE Alu 1 139 -171 2118 98 0 22 chr4 21232644 21232961 -163055701 + AluSq SINE Alu 2 311 -2 1912 113 0 38 chr4 21232961 21233144 -163055518 + AluSg SINE Alu 139 306 -4 200 339 0 0 chr4 21233382 21233447 -163055215 + (CG)n Simple_repeat Simple_repeat 1 65 0 238 279 85 47 chr4 21234770 21234899 -163053763 + MIR SINE MIR 113 246 -16 2102 213 29 42 chr4 21235139 21235688 -163052974 - MER34 LTR ERV1 0 542 1 1593 141 3 71 chr4 21236191 21236517 -163052145 - AluSx SINE Alu -8 304 1 818 134 0 24 chr4 21237670 21237797 -163050865 + FLAM_C SINE Alu 17 140 -3 221 135 27 0 chr4 21239512 21239549 -163049113 - MIR SINE MIR -58 150 113 474 283 38 25 chr4 21240361 21240520 -163048142 + MIR SINE MIR 13 173 -89 393 348 28 0 chr4 21241350 21241491 -163047171 - MIR3 SINE MIR -3 205 61 1022 145 0 40 chr4 21241560 21241633 -163047029 - L1MB8 LINE L1 -3 6175 6101 1434 169 74 14 chr4 21241633 21241917 -163046745 - AluJo SINE Alu -1 301 1 1022 145 0 40 chr4 21241917 21242043 -163046619 - L1MB8 LINE L1 -77 6101 5984 444 140 33 0 chr4 21242064 21242164 -163046498 - L1MB8 LINE L1 -494 5680 5573 563 227 25 0 chr4 21242879 21242998 -163045664 + FLAM_A SINE Alu 5 126 -7 2018 125 0 0 chr4 21243021 21243310 -163045352 + AluSx SINE Alu 1 289 -23 1151 196 4 27 chr4 21244230 21244490 -163044172 - AluJb SINE Alu -16 296 43 810 148 16 0 chr4 21244519 21244641 -163044021 - FLAM_C SINE Alu -18 125 2 323 265 81 33 chr4 21244731 21244893 -163043769 - MIR SINE MIR -39 223 51 2102 139 0 0 chr4 21245248 21245558 -163043104 - AluSx SINE Alu -2 310 1 500 312 127 0 chr4 21245637 21245810 -163042852 - MIR SINE MIR -21 241 47 690 203 8 0 chr4 21245837 21245955 -163042707 - FLAM_C SINE Alu -23 120 2 210 295 62 27 chr4 21246529 21246641 -163042021 - L3 LINE CR1 -156 1421 1306 356 172 17 133 chr4 21246641 21246767 -163041895 - Charlie7 DNA MER1_type 0 2612 2512 2240 77 3 0 chr4 21246767 21247067 -163041595 - AluY SINE Alu -10 301 1 356 172 17 133 chr4 21247067 21247120 -163041542 - Charlie7 DNA MER1_type -100 2512 2454 951 118 0 15 chr4 21247131 21247266 -163041396 - AluJo/FLAM SINE Alu -169 133 1 1177 108 0 44 chr4 21247266 21247460 -163041202 - AluSg/x SINE Alu -8 304 118 * 1213 112 0 11 chr4 21247459 21247638 -163041024 - AluSg SINE Alu -133 177 1 407 324 53 27 chr4 21247775 21248096 -163040566 - L2 LINE L2 -219 3053 2721 360 171 71 0 chr4 21248097 21248167 -163040495 - L1ME1 LINE L1 -10 6156 6082 718 210 0 0 chr4 21248175 21248299 -163040363 + FLAM_A SINE Alu 4 127 -6 2832 217 73 31 chr4 21248344 21249011 -163039651 - L1ME1 LINE L1 -72 6094 5387 1964 106 39 0 chr4 21249011 21249295 -163039367 - AluSx SINE Alu -17 295 1 2832 217 73 31 chr4 21249295 21249424 -163039238 - L1ME1 LINE L1 -779 5387 5265 1210 217 99 56 chr4 21249418 21249807 -163038855 - L1ME1 LINE L1 -1094 5052 4640 * 2099 120 0 3 chr4 21249807 21250108 -163038554 - AluJb SINE Alu -10 302 3 1210 217 99 56 chr4 21250108 21250161 -163038501 - L1ME1 LINE L1 -1506 4640 4591 217 309 72 22 chr4 21250224 21250363 -163038299 - L2 LINE L2 -667 2647 2502 717 158 15 15 chr4 21251214 21251347 -163037315 + FLAM_C SINE Alu 1 133 0 1330 42 6 6 chr4 21251365 21251531 -163037131 - AluY SINE Alu -141 170 5 753 251 191 39 chr4 21252356 21252529 -163036133 - L1MC4 LINE L1 -140 7902 7757 2345 85 3 0 chr4 21252529 21252836 -163035826 - AluSp SINE Alu -5 308 1 753 251 191 39 chr4 21252836 21253145 -163035517 - L1MC4 LINE L1 -285 7757 7347 1500 196 27 3 chr4 21253470 21253766 -163034896 - AluJb SINE Alu -9 303 1 596 161 0 27 chr4 21254361 21254473 -163034189 - AluJb SINE Alu -178 134 26 1855 112 58 4 chr4 21254959 21255235 -163033427 - AluSx SINE Alu -21 291 1 826 113 14 56 chr4 21255235 21255377 -163033285 - AluSq/x SINE Alu -176 136 1 2048 111 4 0 chr4 21255454 21255757 -163032905 + AluSc SINE Alu 1 304 0 278 341 33 0 chr4 21256017 21256108 -163032554 + MIR SINE MIR 31 124 -138 362 289 67 30 chr4 21257050 21257185 -163031477 + MIR SINE MIR 113 252 -10 1708 127 11 4 chr4 21257767 21258027 -163030635 + MER2 DNA MER2_type 4 265 -80 340 128 0 0 chr4 21258103 21258150 -163030512 + MER2 DNA MER2_type 298 344 -1 214 257 159 35 chr4 21258410 21258523 -163030139 - L2 LINE L2 -9 3263 3137 2139 89 28 0 chr4 21258888 21259179 -163029483 - AluSx SINE Alu -13 299 1 2091 90 3 7 chr4 21259223 21259511 -163029151 + AluY SINE Alu 1 287 -24 1624 153 16 66 chr4 21259573 21259703 -163028959 + AluJo SINE Alu 1 136 -176 2177 75 7 36 chr4 21259703 21260011 -163028651 - AluSp SINE Alu -14 299 1 1995 86 76 3 chr4 21260012 21260303 -163028359 - AluSx SINE Alu 0 312 1 1624 153 16 66 chr4 21260303 21260490 -163028172 + AluJo SINE Alu 135 304 -8 279 0 0 0 chr4 21261316 21261347 -163027315 + (CA)n Simple_repeat Simple_repeat 1 31 0 239 196 0 0 chr4 21261696 21261742 -163026920 - L2 LINE L2 0 3313 3268 518 156 90 8 chr4 21262067 21262189 -163026473 - HAL1 LINE L1 -110 2397 2266 182 365 19 0 chr4 21262190 21262242 -163026420 + L2 LINE L2 3112 3164 -108 214 196 43 0 chr4 21262295 21262341 -163026321 + (TGAG)n Simple_repeat Simple_repeat 3 50 0 2017 83 7 10 chr4 21262521 21262835 -163025827 - AluSc SINE Alu 0 309 1 855 212 80 14 chr4 21264399 21264611 -163024051 - MIR SINE MIR 0 262 37 1132 156 12 131 chr4 21264705 21265026 -163023636 + AluJo SINE Alu 1 283 -19 2228 81 0 10 chr4 21265026 21265323 -163023339 + AluSg SINE Alu 1 294 -16 1461 152 13 56 chr4 21265348 21265473 -163023189 + AluJo SINE Alu 9 138 -174 2054 90 38 0 chr4 21265473 21265762 -163022900 + AluSx SINE Alu 1 300 -12 1461 152 13 56 chr4 21265762 21265939 -163022723 + AluJo SINE Alu 138 298 -14 1936 131 10 0 chr4 21266542 21266832 -163021830 - AluSx SINE Alu -19 293 1 1192 128 0 36 chr4 21266888 21267084 -163021578 + AluSg/x SINE Alu 106 294 -18 450 250 90 80 chr4 21267147 21267306 -163021356 + L2 LINE L2 2544 2707 -607 836 147 0 16 chr4 21267306 21267435 -163021227 + FLAM_C SINE Alu 1 127 -6 450 250 90 80 chr4 21267435 21267463 -163021199 + L2 LINE L2 2707 2733 -581 1629 171 32 0 chr4 21267704 21267985 -163020677 + AluJb SINE Alu 1 290 -22 1078 157 73 33 chr4 21267998 21268140 -163020522 + Charlie1 DNA MER1_type 2477 2612 -149 2160 92 7 0 chr4 21268140 21268433 -163020229 - AluY SINE Alu -16 295 1 1078 157 73 33 chr4 21268433 21268564 -163020098 + Charlie1 DNA MER1_type 2612 2761 0 386 229 52 143 chr4 21268599 21268830 -163019832 - L2 LINE L2 -1 3312 3103 480 299 256 11 chr4 21268905 21269280 -163019382 + L2 LINE L2 2830 3296 -17 1978 94 17 3 chr4 21269349 21269637 -163019025 + AluSx SINE Alu 1 292 -20 2481 38 0 0 chr4 21269690 21269982 -163018680 + AluY SINE Alu 2 293 -18 1056 207 114 4 chr4 21269988 21270259 -163018403 + AluJb SINE Alu 2 302 0 324 272 35 18 chr4 21270452 21270566 -163018096 - MIR SINE MIR -58 150 35 221 235 78 0 chr4 21271105 21271156 -163017506 - MIR SINE MIR -119 143 89 2268 73 0 13 chr4 21271728 21272041 -163016621 + AluSg SINE Alu 2 310 0 2040 82 18 4 chr4 21272173 21272452 -163016210 - AluSg SINE Alu -27 283 1 233 388 10 0 chr4 21272651 21272754 -163015908 + L2 LINE L2 2723 2826 -488 285 206 52 125 chr4 21272893 21273029 -163015633 + L2 LINE L2 3188 3313 0 417 341 16 0 chr4 21273638 21273767 -163014895 - MIR3 SINE MIR -28 180 50 1962 102 7 3 chr4 21273830 21274113 -163014549 + AluSx SINE Alu 9 292 -20 1813 160 16 0 chr4 21274197 21274504 -163014158 - AluJb SINE Alu 0 312 1 1813 102 0 77 chr4 21274724 21275037 -163013625 - AluY SINE Alu -22 289 1 486 276 138 40 chr4 21275481 21275778 -163012884 - L2 LINE L2 -3 3310 2985 25 0 0 0 chr4 21276421 21276446 -163012216 + AT_rich Low_complexity Low_complexity 1 25 0 1673 140 72 0 chr4 21276552 21276830 -163011832 - AluSq SINE Alu -15 298 1 1586 159 6 41 chr4 21276890 21277205 -163011457 - AluJo SINE Alu -8 304 1 2105 106 3 0 chr4 21277216 21277509 -163011153 - AluSc SINE Alu -15 294 1 2438 118 31 14 chr4 21278888 21279243 -163009419 - THE1B LTR MaLR -3 361 1 2112 121 7 0 chr4 21279316 21279613 -163009049 + AluSx SINE Alu 1 299 -13 277 238 0 16 chr4 21282217 21282280 -163006382 + MIR SINE MIR 131 192 -70 1077 132 0 0 chr4 21282288 21282447 -163006215 + AluSp SINE Alu 137 295 -18 406 86 0 17 chr4 21282876 21282934 -163005728 - Alu SINE Alu -20 292 236 1233 125 115 10 chr4 21283099 21283161 -163005501 - AluSx SINE Alu -91 221 167 2027 100 31 0 chr4 21283161 21283450 -163005212 - AluSc SINE Alu -11 298 1 1233 125 115 10 chr4 21283450 21283587 -163005075 - AluSx SINE Alu -145 167 1 953 85 0 0 chr4 21283918 21284047 -163004615 + AluSg/x SINE Alu 173 301 -9 510 255 121 38 chr4 21284213 21284452 -163004210 + MER90 LTR ERV1 1 259 -316 534 152 0 0 chr4 21284453 21284545 -163004117 + (TG)n Simple_repeat Simple_repeat 2 93 0 904 208 212 4 chr4 21284558 21284813 -163003849 + MER90 LTR ERV1 307 614 0 1667 82 21 4 chr4 21285206 21285439 -163003223 + AluSx SINE Alu 55 291 -21 663 309 127 37 chr4 21285443 21285822 -163002840 + ERVL LTR ERVL 2310 2722 -3042 379 246 60 60 chr4 21286029 21286212 -163002450 + L1ME LINE L1 5525 5707 -414 1803 175 33 19 chr4 21286450 21286810 -163001852 + MLT1A1 LTR MaLR 1 365 0 956 173 226 12 chr4 21287418 21287661 -163001001 - AluJo SINE Alu -7 295 1 1904 152 0 13 chr4 21288256 21288571 -163000091 - AluJb SINE Alu 0 312 2 2019 111 3 3 chr4 21289121 21289419 -162999243 - AluSx SINE Alu -14 298 1 676 296 28 9 chr4 21289478 21289691 -162998971 - MIR SINE MIR 0 262 46 396 296 117 39 chr4 21290281 21290528 -162998134 - MER46C DNA MER2_type -3 335 58 2052 130 0 0 chr4 21290528 21290821 -162997841 - AluSx SINE Alu -19 293 1 396 296 117 39 chr4 21290821 21290880 -162997782 - MER46C DNA MER2_type -280 58 5 291 187 88 0 chr4 21290979 21291070 -162997592 - L1ME4a LINE L1 -15 6106 6008 541 223 79 60 chr4 21291683 21291948 -162996714 - L1MC5 LINE L1 -60 7901 7632 1957 109 18 0 chr4 21292314 21292599 -162996063 - AluSx SINE Alu -21 291 2 2038 91 0 7 chr4 21293226 21293524 -162995138 - AluSg SINE Alu -14 296 1 519 221 195 15 chr4 21293611 21293806 -162994856 + MIR SINE MIR 13 242 -20 674 237 190 37 chr4 21293930 21294332 -162994330 + L2 LINE L2 2570 2909 -404 1877 112 3 86 chr4 21294332 21294374 -162994288 - AluJb SINE Alu -1 311 267 228 35 0 0 chr4 21294374 21294403 -162994259 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 1877 112 3 86 chr4 21294403 21294699 -162993963 - AluJb SINE Alu -45 267 1 674 237 190 37 chr4 21294699 21294848 -162993814 + L2 LINE L2 2909 3313 0 1629 138 15 0 chr4 21295062 21295330 -162993332 - AluSx SINE Alu -40 272 1 263 284 15 0 chr4 21295330 21295397 -162993265 + MER81 DNA DNA 47 114 0 2149 97 0 10 chr4 21296029 21296329 -162992333 - AluSq SINE Alu -16 297 1 2151 83 6 41 chr4 21296388 21296702 -162991960 + AluSg SINE Alu 1 303 -7 509 236 50 45 chr4 21296789 21296988 -162991674 + L1M4 LINE L1 3317 3516 -2630 318 288 52 63 chr4 21297034 21297122 -162991540 - MIR SINE MIR -13 249 162 1850 158 0 0 chr4 21297122 21297426 -162991236 - AluSx SINE Alu -3 309 6 318 288 52 63 chr4 21297426 21297528 -162991134 - MIR SINE MIR -100 162 61 2116 85 0 63 chr4 21297664 21297995 -162990667 - AluSg SINE Alu 0 310 1 186 355 108 64 chr4 21298758 21299009 -162989653 + L2 LINE L2 3007 3268 -4 14418 35 0 2 chr4 21300443 21302940 -162985722 + L1PA5 LINE L1 3650 6154 0 1641 166 20 7 chr4 21303450 21303746 -162984916 - AluJo SINE Alu -12 300 1 454 285 11 62 chr4 21304172 21304351 -162984311 - MIR SINE MIR -70 192 23 2137 105 7 33 chr4 21304546 21304852 -162983810 - AluSx SINE Alu -14 298 1 247 296 74 0 chr4 21305272 21305353 -162983309 + L2 LINE L2 3227 3313 0 2433 87 0 0 chr4 21305500 21305798 -162982864 + AluY SINE Alu 1 298 -13 735 241 7 0 chr4 21305985 21306406 -162982256 + (TCCA)n Simple_repeat Simple_repeat 1 424 0 776 144 0 38 chr4 21307100 21307232 -162981430 - FLAM_C SINE Alu -5 128 2 2720 48 0 3 chr4 21307453 21307764 -162980898 + AluY SINE Alu 1 310 -1 969 225 5 14 chr4 21307810 21308019 -162980643 - MIR SINE MIR -25 237 31 553 256 44 30 chr4 21308266 21308327 -162980335 - MIR SINE MIR 0 262 203 2437 61 20 0 chr4 21308327 21308621 -162980041 - AluY SINE Alu -11 300 1 553 256 44 30 chr4 21308621 21308762 -162979900 - MIR SINE MIR -59 203 57 237 219 47 16 chr4 21309367 21309431 -162979231 + MLT1K LTR MaLR 183 248 -340 180 204 0 82 chr4 21309771 21309820 -162978842 - L2 LINE L2 -5 3267 3223 2284 141 100 50 chr4 21309902 21310383 -162978279 + MLT1D LTR MaLR 1 505 0 194 189 14 95 chr4 21310432 21310506 -162978156 - MIR SINE MIR -114 148 81 749 181 16 0 chr4 21310549 21310676 -162977986 - FLAM_C SINE Alu -10 133 5 1668 179 24 0 chr4 21311049 21311340 -162977322 - AluJo SINE Alu -11 301 4 750 246 22 6 chr4 21312028 21312211 -162976451 - MIR SINE MIR -35 227 42 2085 155 0 0 chr4 21312589 21312899 -162975763 - AluSx SINE Alu -2 310 1 1212 278 116 44 chr4 21312920 21313689 -162974973 - HAL1 LINE L1 0 2507 1684 2343 115 0 0 chr4 21313850 21314154 -162974508 - AluSx SINE Alu -8 304 1 474 238 33 0 chr4 21314338 21314460 -162974202 + MIR SINE MIR 65 190 -72 222 263 28 164 chr4 21315017 21315306 -162973356 + L2 LINE L2 2972 3299 -14 2014 141 3 7 chr4 21315306 21315604 -162973058 - AluJo SINE Alu -15 297 1 222 263 28 164 chr4 21315604 21315685 -162972977 + L2 LINE L2 3299 3288 -25 2452 77 3 0 chr4 21315685 21315983 -162972679 - AluSx SINE Alu -13 299 1 222 263 28 164 chr4 21315983 21316007 -162972655 + L2 LINE L2 3287 3313 0 449 300 96 23 chr4 21317223 21317443 -162971219 + MIR SINE MIR 2 237 -25 2272 98 0 7 chr4 21317466 21317771 -162970891 + AluSq SINE Alu 1 303 -10 3516 219 57 19 chr4 21318071 21318534 -162970128 - L1ME2 LINE L1 -1 6163 5719 2266 113 0 0 chr4 21318534 21318834 -162969828 - AluSx SINE Alu -11 301 2 3516 219 57 19 chr4 21318834 21319132 -162969530 - L1ME2 LINE L1 -445 5719 5366 2076 152 0 3 chr4 21319132 21319434 -162969228 - AluJb SINE Alu -11 301 1 3516 219 57 19 chr4 21319434 21319496 -162969166 - L1ME2 LINE L1 -798 5366 5308 1925 134 13 10 chr4 21319500 21319813 -162968849 + L1P LINE L1 4076 4389 -1757 261 0 0 0 chr4 21319813 21319842 -162968820 + (CA)n Simple_repeat Simple_repeat 2 30 0 2111 145 27 19 chr4 21319910 21320282 -162968380 + THE1C LTR MaLR 1 375 0 208 328 160 0 chr4 21320492 21320617 -162968045 + MIR SINE MIR 88 232 -30 201 74 0 0 chr4 21320865 21320892 -162967770 + (A)n Simple_repeat Simple_repeat 1 27 0 253 386 0 15 chr4 21321103 21321235 -162967427 - MIR SINE MIR -120 142 13 357 295 11 0 chr4 21321690 21321785 -162966877 + MIR3 SINE MIR 65 160 -48 414 278 132 5 chr4 21321951 21322156 -162966506 + L2 LINE L2 1886 2116 -1198 290 216 165 0 chr4 21322192 21322289 -162966373 + L2 LINE L2 2899 3011 -302 359 271 371 6 chr4 21322310 21322480 -162966182 + MIR SINE MIR 15 246 -16 1926 144 0 63 chr4 21322500 21322819 -162965843 - AluSx SINE Alu -11 301 3 578 260 119 22 chr4 21322836 21323063 -162965599 + L2 LINE L2 3047 3295 -18 1688 196 10 3 chr4 21323147 21323453 -162965209 - AluJo SINE Alu 0 312 5 817 291 63 29 chr4 21323844 21324160 -162964502 + MLT2F LTR ERVL 1 327 -336 1088 269 70 36 chr4 21324160 21324573 -162964089 + MLT2F LTR ERVL 237 663 0 225 265 44 0 chr4 21324574 21324642 -162964020 + L2 LINE L2 2978 3048 -224 2242 118 0 9 chr4 21324718 21325033 -162963629 - AluSx SINE Alu 0 312 1 347 186 93 35 chr4 21325052 21325138 -162963524 - L2 LINE L2 -13 3300 3210 337 274 94 18 chr4 21325825 21326048 -162962614 + L1M4 LINE L1 2405 2644 -3502 382 246 156 24 chr4 21326319 21326653 -162962009 + L1M4 LINE L1 2961 3338 -2808 236 352 29 9 chr4 21326919 21327024 -162961638 - MIR SINE MIR -68 140 34 1972 269 28 10 chr4 21327180 21327682 -162960980 + L1PB1 LINE L1 1 511 -5380 2176 206 64 13 chr4 21327684 21328517 -162960145 + L1PB1 LINE L1 684 1244 -4677 * 3142 202 1 22 chr4 21328510 21329159 -162959503 - L1 LINE L1 -1941 4205 3570 6205 96 18 3 chr4 21329159 21330121 -162958541 + L1PB1 LINE L1 5177 6151 0 862 261 28 4 chr4 21330139 21330392 -162958270 + L1PB1 LINE L1 1305 1563 -4407 14143 125 32 25 chr4 21330406 21332676 -162955986 - Tigger1 DNA MER2_type 0 2418 132 1180 143 26 0 chr4 21332675 21332864 -162955798 + Tigger1 DNA MER2_type 2224 2417 -1 * 413 192 0 0 chr4 21332864 21332937 -162955725 + Tigger3(Golem) DNA MER2_type 69 141 -2888 * 1600 149 4 19 chr4 21332935 21333197 -162955465 + Tigger3(Golem) DNA MER2_type 2771 3028 -1 1922 158 0 7 chr4 21333253 21333545 -162955117 - AluJb SINE Alu -22 290 1 9953 156 17 11 chr4 21333586 21336334 -162952328 + L1PB1 LINE L1 3172 5927 -48 467 187 60 22 chr4 21336312 21336446 -162952216 + L1MA8 LINE L1 5972 6110 -5 * 407 63 0 16 chr4 21336620 21336683 -162951979 + L1PB1 LINE L1 6090 6151 0 1870 158 7 7 chr4 21338678 21338994 -162949668 - AluSx SINE Alu 0 312 3 282 328 175 11 chr4 21339348 21339525 -162949137 + L1MC4a LINE L1 5427 5632 -2176 665 293 99 9 chr4 21339548 21339770 -162948892 - MIR SINE MIR -20 242 1 389 227 37 49 chr4 21339783 21339986 -162948676 + L1MC4a LINE L1 5692 5798 -323 1687 161 32 4 chr4 21339991 21340270 -162948392 + AluJb SINE Alu 1 287 -25 253 90 41 49 chr4 21340295 21340417 -162948245 + (TATAA)n Simple_repeat Simple_repeat 1 121 0 198 71 0 0 chr4 21340411 21340439 -162948223 + (TTA)n Simple_repeat Simple_repeat 2 29 0 * 210 356 11 0 chr4 21340758 21340848 -162947814 + L2 LINE L2 3182 3272 0 3371 75 17 9 chr4 21340948 21341414 -162947248 + L1PA10 LINE L1 5699 6168 0 2373 90 0 32 chr4 21341466 21341777 -162946885 + AluSg SINE Alu 1 301 -9 790 155 210 55 chr4 21341868 21342049 -162946613 + MER20 DNA MER1_type 3 211 -8 311 260 145 41 chr4 21342712 21342857 -162945805 + MIR SINE MIR 20 200 -62 1919 153 3 0 chr4 21342857 21343151 -162945511 + AluJb SINE Alu 1 295 -17 311 260 145 41 chr4 21343151 21343222 -162945440 + MIR SINE MIR 200 262 0 1712 218 43 41 chr4 21343664 21344128 -162944534 + MLT1C LTR MaLR 3 467 0 2350 109 0 3 chr4 21344878 21345190 -162943472 - AluSx SINE Alu -1 311 1 853 133 0 52 chr4 21345845 21345980 -162942682 - FLAM_C SINE Alu -5 128 1 295 123 18 18 chr4 21345986 21346043 -162942619 - MIR SINE MIR -55 207 151 2315 110 3 0 chr4 21346064 21346364 -162942298 + AluSx SINE Alu 1 301 -11 202 262 79 37 chr4 21346412 21346576 -162942086 - L2 LINE L2 -261 3011 2841 927 259 28 4 chr4 21347325 21347580 -162941082 + MIR SINE MIR 2 262 0 2315 106 3 3 chr4 21347601 21347913 -162940749 + AluSx SINE Alu 1 312 0 2296 75 0 0 chr4 21347990 21348268 -162940394 + AluSc SINE Alu 21 298 -11 207 224 20 10 chr4 21348363 21348461 -162940201 + GA-rich Low_complexity Low_complexity 4 102 0 183 295 49 0 chr4 21348799 21348860 -162939802 + MER5B DNA MER1_type 115 178 0 648 159 6 99 chr4 21349022 21349204 -162939458 - ORSL DNA AcHobo -110 165 1 263 257 76 0 chr4 21349261 21349366 -162939296 + MLT1L LTR MaLR 489 601 -14 813 157 0 43 chr4 21350027 21350167 -162938495 + AluJo SINE Alu 1 134 -178 2473 71 0 0 chr4 21350439 21350735 -162937927 + AluY SINE Alu 1 296 -15 632 264 155 27 chr4 21350855 21351261 -162937401 - L2 LINE L2 0 3313 2856 884 256 155 43 chr4 21351302 21351347 -162937315 - L2 LINE L2 -584 2730 2691 1847 165 3 25 chr4 21351347 21351663 -162936999 - AluJo SINE Alu -3 309 1 884 256 155 43 chr4 21351663 21352171 -162936491 - L2 LINE L2 -623 2691 2115 367 325 92 6 chr4 21352269 21352432 -162936230 - MIR SINE MIR 0 262 86 1662 182 0 4 chr4 21352741 21353056 -162935606 + AluJo SINE Alu 15 328 0 273 351 115 32 chr4 21353061 21353503 -162935159 - L2 LINE L2 -429 2885 2407 189 132 0 0 chr4 21354275 21354313 -162934349 + (CAAAAA)n Simple_repeat Simple_repeat 2 39 0 240 293 0 12 chr4 21354854 21354936 -162933726 + L1MEc LINE L1 610 690 -5706 2926 239 114 17 chr4 21354987 21357086 -162931576 + L1MEc LINE L1 692 2956 -3259 224 234 175 80 chr4 21357495 21357632 -162931030 + MIR SINE MIR 5 154 -108 341 322 48 35 chr4 21357662 21357892 -162930770 + LTR67 LTR ERVL 2 234 -323 963 154 0 0 chr4 21358048 21358210 -162930452 + MER3 DNA MER1_type 48 209 0 525 246 156 5 chr4 21358257 21358456 -162930206 + LTR67 LTR ERVL 329 557 0 485 258 126 0 chr4 21359169 21359320 -162929342 + MIR SINE MIR 25 194 -68 2018 139 3 7 chr4 21359414 21359716 -162928946 + AluJb SINE Alu 3 303 -9 396 275 58 88 chr4 21359718 21359848 -162928814 - MIR SINE MIR 0 262 134 2431 91 0 0 chr4 21359848 21360156 -162928506 + AluSc SINE Alu 1 308 -1 396 275 58 88 chr4 21360156 21360260 -162928402 - MIR SINE MIR -128 134 28 354 256 51 90 chr4 21360604 21360838 -162927824 - MIR SINE MIR -5 257 33 247 229 20 144 chr4 21360969 21361122 -162927540 + L2 LINE L2 3138 3271 -1 398 239 23 0 chr4 21362784 21362872 -162925790 + MIR SINE MIR 64 153 -55 560 153 0 0 chr4 21362884 21362969 -162925693 + AluJ/FLAM SINE Alu 1 85 -227 1964 149 0 7 chr4 21362990 21363285 -162925377 - AluSq SINE Alu -20 293 1 860 144 8 0 chr4 21363299 21363424 -162925238 - AluJo SINE Alu -176 136 11 21 0 0 0 chr4 21364445 21364466 -162924196 + AT_rich Low_complexity Low_complexity 1 21 0 349 311 72 48 chr4 21365812 21365868 -162922794 - MER5B DNA MER1_type -7 171 118 2001 119 3 13 chr4 21365868 21366205 -162922457 + AluSc SINE Alu 1 309 0 349 311 72 48 chr4 21366205 21366315 -162922347 - MER5B DNA MER1_type -60 118 1 27 0 0 0 chr4 21366421 21366448 -162922214 + AT_rich Low_complexity Low_complexity 1 27 0 25 51 0 0 chr4 21366589 21366628 -162922034 + AT_rich Low_complexity Low_complexity 1 39 0 253 277 71 0 chr4 21368068 21368209 -162920453 - L1MC/D LINE L1 -2028 5780 5630 336 273 39 31 chr4 21369128 21369256 -162919406 - MIR SINE MIR -14 248 120 543 185 9 9 chr4 21369271 21369379 -162919283 + FLAM_A SINE Alu 31 138 -4 424 284 181 30 chr4 21369379 21369682 -162918980 + L1ME4a LINE L1 5573 5921 -200 300 224 77 84 chr4 21369713 21369856 -162918806 + L1ME4a LINE L1 5880 6021 -100 2480 87 0 3 chr4 21370210 21370520 -162918142 - AluSx SINE Alu -1 311 3 338 257 152 70 chr4 21371065 21371236 -162917426 - L1ME3A LINE L1 -31 6139 5955 253 308 11 0 chr4 21371240 21371331 -162917331 + L1ME LINE L1 5610 5701 -420 2243 117 0 0 chr4 21371812 21372111 -162916551 - AluSx SINE Alu -13 299 1 390 195 0 13 chr4 21372137 21372214 -162916448 - Tigger5 DNA MER2_type -7 2316 2241 306 200 0 0 chr4 21372227 21372282 -162916380 - Tigger5 DNA MER2_type -2268 55 1 1468 196 138 22 chr4 21372373 21372831 -162915831 - Charlie1b DNA MER1_type -8 515 5 203 61 30 0 chr4 21373022 21373055 -162915607 + (TA)n Simple_repeat Simple_repeat 1 34 0 2522 131 86 22 chr4 21373062 21373610 -162915052 - L1MA6 LINE L1 0 6300 5718 3074 184 45 3 chr4 21373610 21374261 -162914401 - L1MB8 LINE L1 -61 6117 5440 2106 119 7 0 chr4 21374261 21374594 -162914068 - AluSq SINE Alu 0 335 1 4109 108 51 52 chr4 21374611 21375354 -162913308 - L1MA3 LINE L1 -1 6304 5563 24 0 0 0 chr4 21375473 21375497 -162913165 + AT_rich Low_complexity Low_complexity 1 24 0 571 257 84 26 chr4 21375705 21375931 -162912731 + L3 LINE CR1 1221 1459 -118 2420 75 10 0 chr4 21375967 21376260 -162912402 + AluSc SINE Alu 1 296 -13 324 152 76 0 chr4 21376425 21376504 -162912158 - Charlie7 DNA MER1_type -1980 632 548 207 345 0 12 chr4 21376532 21376616 -162912046 - L2 LINE L2 -424 2889 2807 956 240 100 14 chr4 21376875 21377234 -162911428 - Charlie7 DNA MER1_type -1889 723 334 242 216 128 20 chr4 21377420 21377522 -162911140 + L1 LINE L1 3647 3759 -2387 372 314 126 36 chr4 21377814 21378123 -162910539 + L1MC4a LINE L1 4351 4687 -1459 278 322 83 7 chr4 21378168 21378457 -162910205 + L1MC4a LINE L1 4754 5064 -1082 226 356 10 20 chr4 21378713 21378814 -162909848 - L3 LINE CR1 -25 1552 1453 187 236 73 0 chr4 21378919 21378974 -162909688 - L3 LINE CR1 -312 1265 1207 259 342 121 9 chr4 21378987 21379218 -162909444 - L3 LINE CR1 -237 1340 1084 201 349 45 0 chr4 21379723 21379789 -162908873 + L2 LINE L2 3208 3276 -37 22 0 0 0 chr4 21379792 21379814 -162908848 + AT_rich Low_complexity Low_complexity 1 22 0 221 226 94 0 chr4 21379825 21379878 -162908784 - L2 LINE L2 -1342 1972 1915 194 409 151 5 chr4 21380684 21380870 -162907792 + L2 LINE L2 2723 2935 -379 201 213 21 0 chr4 21381545 21381592 -162907070 + T-rich Low_complexity Low_complexity 1 48 0 774 258 61 6 chr4 21382008 21382338 -162906324 - L1MEd LINE L1 -4862 1257 910 519 344 27 54 chr4 21382397 21382621 -162906041 - L2 LINE L2 -207 3106 2889 1339 113 18 5 chr4 21382917 21383138 -162905524 - Tigger4(Zombi) DNA MER2_type -2 2729 2506 347 327 109 42 chr4 21383349 21383630 -162905032 + L2 LINE L2 2741 3033 -280 1465 260 101 25 chr4 21383781 21384415 -162904247 + L1MC4a LINE L1 5263 5944 -1864 391 300 95 80 chr4 21384433 21384896 -162903766 + L1MC4a LINE L1 6039 6508 -1300 975 252 65 74 chr4 21384968 21385577 -162903085 + L1MC5 LINE L1 6614 7213 -762 798 101 0 0 chr4 21385590 21385709 -162902953 + L1M1 LINE L1 5546 5664 -641 303 260 0 10 chr4 21385725 21385829 -162902833 + L1M1 LINE L1 5652 5754 -550 501 98 24 0 chr4 21385938 21386020 -162902642 - MER30 DNA MER1_type -146 84 1 2226 100 3 7 chr4 21386222 21386521 -162902141 - AluSp SINE Alu -15 298 1 24 53 0 0 chr4 21386974 21387012 -162901650 + AT_rich Low_complexity Low_complexity 1 38 0 22 35 0 0 chr4 21387591 21387620 -162901042 + AT_rich Low_complexity Low_complexity 1 29 0 25 51 0 0 chr4 21388048 21388087 -162900575 + AT_rich Low_complexity Low_complexity 1 39 0 379 231 137 8 chr4 21388948 21389065 -162899597 + MER46C DNA MER2_type 172 303 -35 482 267 25 91 chr4 21389176 21389406 -162899256 + MIR SINE MIR 42 260 -2 1934 127 16 0 chr4 21389490 21389813 -162898849 + HSMAR2 DNA Mariner 1 328 -974 5939 124 32 3 chr4 21391231 21392190 -162896472 + HSMAR2 DNA Mariner 315 1301 -1 398 262 34 54 chr4 21393044 21393193 -162895469 + MLT1F1 LTR MaLR 14 159 -383 326 350 0 8 chr4 21393241 21393358 -162895304 + CT-rich Low_complexity Low_complexity 1 116 0 633 273 73 8 chr4 21393385 21393653 -162895009 + MLT1F1 LTR MaLR 236 559 -8 360 272 44 7 chr4 21393898 21394034 -162894628 + MLT1-int LTR MaLR 399 539 -832 2053 140 38 89 chr4 21394034 21394130 -162894532 + MSTB LTR MaLR 1 100 -326 2098 172 69 14 chr4 21394130 21394567 -162894095 + LOR1b LTR ERV1 1 461 0 2053 140 38 89 chr4 21394567 21394833 -162893829 + MSTB LTR MaLR 100 378 -48 1772 161 45 0 chr4 21394833 21395125 -162893537 - AluSx SINE Alu -7 305 1 2053 140 38 89 chr4 21395125 21395162 -162893500 + MSTB LTR MaLR 378 415 -11 1455 126 28 0 chr4 21395162 21395377 -162893285 - AluSg/x SINE Alu -6 306 86 197 33 33 0 chr4 21395378 21395408 -162893254 + (TTTTG)n Simple_repeat Simple_repeat 1 31 0 1960 108 26 0 chr4 21395408 21395677 -162892985 - AluSx SINE Alu -31 281 6 2053 140 38 89 chr4 21395677 21395721 -162892941 + MSTB LTR MaLR 413 426 0 280 254 0 0 chr4 21395722 21395793 -162892869 + MLT1-int LTR MaLR 536 606 -765 446 144 8 136 chr4 21395969 21396101 -162892561 + L1M4 LINE L1 101 215 -6327 324 0 0 0 chr4 21396130 21396166 -162892496 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 2974 214 53 24 chr4 21396211 21397103 -162891559 + L1M4 LINE L1 784 1701 -4841 956 288 24 17 chr4 21397178 21397640 -162891022 + L1M4 LINE L1 3730 4194 -2450 850 142 34 0 chr4 21397664 21397812 -162890850 - Tigger1 DNA MER2_type -14 2404 2252 1176 169 59 24 chr4 21397823 21398078 -162890584 + MER21A LTR ERV1 1 264 -667 1903 164 221 15 chr4 21398083 21398539 -162890123 + MER21A LTR ERV1 376 925 -6 5899 115 17 22 chr4 21398546 21399203 -162889459 - Tigger1 DNA MER2_type -175 2243 1591 2103 114 3 32 chr4 21399203 21399518 -162889144 - AluSc SINE Alu -3 306 1 5899 115 17 22 chr4 21399518 21399840 -162888822 - Tigger1 DNA MER2_type -827 1591 1269 1801 167 63 35 chr4 21399841 21400372 -162888290 + MLT2A2 LTR ERVL 1 554 0 5821 142 43 43 chr4 21400372 21401275 -162887387 + HERVL-A2 LTR ERVL 1 903 -4861 182 196 87 120 chr4 21401275 21401367 -162887295 + MER5C DNA MER1_type 10 98 -226 5821 142 43 43 chr4 21401367 21401553 -162887109 + HERVL-A2 LTR ERVL 903 1088 -4676 2131 109 0 0 chr4 21401553 21401829 -162886833 + AluSx SINE Alu 1 276 -36 5821 142 43 43 chr4 21401829 21402052 -162886610 + HERVL-A2 LTR ERVL 1088 1401 -4363 363 89 0 0 chr4 21402056 21402112 -162886550 - HERVL LTR ERVL -1725 3929 3874 582 84 0 0 chr4 21402140 21402223 -162886439 + HERVL-A2 LTR ERVL 3741 3823 -1831 10578 95 16 8 chr4 21402323 21403598 -162885064 + HERVL-A2 LTR ERVL 4104 5396 -258 2388 88 0 31 chr4 21403598 21403917 -162884745 + AluSc SINE Alu 1 309 0 10578 95 16 8 chr4 21403917 21404179 -162884483 + HERVL-A2 LTR ERVL 5396 5654 0 1952 175 30 52 chr4 21404179 21404758 -162883904 + MLT2A2 LTR ERVL 1 554 0 * 6655 154 43 19 chr4 21404758 21405997 -162882665 - Tigger1 DNA MER2_type -1146 1272 3 5445 201 38 56 chr4 21406012 21406133 -162882529 + L1M4 LINE L1 3736 3858 -2326 1773 172 0 20 chr4 21406133 21406436 -162882226 + AluJb SINE Alu 1 297 -15 5445 201 38 56 chr4 21406436 21408228 -162880434 + L1M4 LINE L1 3858 5607 -577 570 216 0 9 chr4 21408229 21408345 -162880317 + FLAM_A SINE Alu 1 115 -18 376 258 30 23 chr4 21408369 21408501 -162880161 - L1P LINE L1 -1989 4157 4025 235 333 58 0 chr4 21408547 21408703 -162879959 - L1MCa LINE L1 -2230 4196 4032 288 118 59 0 chr4 21408748 21408799 -162879863 + L1M4 LINE L1 5400 5453 -721 648 300 90 50 chr4 21408854 21409863 -162878799 - L1MCa LINE L1 -2504 3922 2873 822 259 10 5 chr4 21410664 21410857 -162877805 + MER58A DNA MER1_type 26 219 -5 387 309 97 26 chr4 21410863 21411174 -162877488 - HAL1b LINE L1 -731 617 285 355 258 80 144 chr4 21411213 21411692 -162876970 - L1MCa LINE L1 -1173 1614 976 1186 205 39 11 chr4 21412107 21412390 -162876272 + L1MC2 LINE L1 6025 6315 -29 2043 166 35 53 chr4 21413389 21413823 -162874839 + MSTB LTR MaLR 1 426 0 214 365 61 50 chr4 21414308 21414489 -162874173 - MIR3 SINE MIR -7 201 19 27 49 0 0 chr4 21415900 21415941 -162872721 + AT_rich Low_complexity Low_complexity 1 41 0 2399 72 0 7 chr4 21416008 21416315 -162872347 - AluSp SINE Alu -8 305 1 2371 76 13 0 chr4 21416418 21416721 -162871941 - AluSp SINE Alu -6 307 1 1305 221 43 37 chr4 21417036 21417551 -162871111 + L1ME LINE L1 5236 5597 -567 229 274 24 12 chr4 21417876 21417960 -162870702 - L1MC4 LINE L1 -1341 6701 6617 231 205 0 54 chr4 21417961 21418073 -162870589 + (TA)n Simple_repeat Simple_repeat 1 106 0 247 205 115 0 chr4 21418076 21418154 -162870508 + L1MC4 LINE L1 6617 6703 -1339 247 130 0 0 chr4 21418160 21418206 -162870456 - LTR66 LTR ERVL -171 439 394 1310 209 70 92 chr4 21418310 21418808 -162869854 - Charlie4a DNA MER1_type -3 505 19 1468 85 0 0 chr4 21419103 21419291 -162869371 + AluY SINE Alu 1 188 -123 226 213 0 33 chr4 21419292 21419353 -162869309 + (TA)n Simple_repeat Simple_repeat 1 59 0 948 126 0 0 chr4 21419353 21419480 -162869182 + AluY SINE Alu 168 294 -17 2160 143 6 18 chr4 21420780 21421122 -162867540 + MER1B DNA MER1_type 2 339 0 711 83 16 25 chr4 21422227 21422348 -162866314 - L1MA2 LINE L1 -158 6146 6027 * 1563 168 66 47 chr4 21422334 21422697 -162865965 - L1MC4a LINE L1 -728 7080 6711 692 138 0 9 chr4 21422799 21422908 -162865754 - MLT1A1 LTR MaLR 0 365 258 3507 173 28 77 chr4 21424883 21425706 -162862956 + L1MA7 LINE L1 5509 6291 0 251 327 133 0 chr4 21426358 21426471 -162862191 - L2 LINE L2 -7 3265 3138 249 314 48 48 chr4 21426793 21427003 -162861659 - L2 LINE L2 -1201 2113 1904 550 228 118 121 chr4 21429482 21429838 -162858824 + L2 LINE L2 2958 3312 -1 2456 50 0 0 chr4 21430423 21430723 -162857939 - AluY SINE Alu -11 300 1 4077 131 0 29 chr4 21430731 21431419 -162857243 - L1PA13 LINE L1 -5 6158 5491 2715 298 125 22 chr4 21431725 21431890 -162856772 - L2 LINE L2 -4 3309 3162 2324 64 0 0 chr4 21431890 21432206 -162856456 + AluY SINE Alu 1 316 0 2715 298 125 22 chr4 21432206 21433424 -162855238 - L2 LINE L2 -151 3162 1789 412 241 129 41 chr4 21433425 21433595 -162855067 - L2 LINE L2 -12 3301 3117 643 357 33 7 chr4 21433687 21433959 -162854703 - L2 LINE L2 -2111 1203 925 5687 126 42 11 chr4 21433973 21434942 -162853720 + L1MA4A LINE L1 5302 6300 -3 766 318 193 12 chr4 21434953 21435591 -162853071 - L2 LINE L2 -2405 909 157 392 252 70 9 chr4 21436774 21436889 -162851773 - L2 LINE L2 0 3313 3192 248 245 137 20 chr4 21437434 21437536 -162851126 + MIR SINE MIR 101 214 -48 533 216 45 0 chr4 21438652 21438763 -162849899 - FLAM_A SINE Alu -17 116 1 25 0 0 0 chr4 21490535 21490560 -162798102 + AT_rich Low_complexity Low_complexity 1 25 0 2106 138 47 14 chr4 21491507 21491870 -162796792 - THE1C LTR MaLR 0 375 1 276 348 28 35 chr4 21492415 21492556 -162796106 - L2 LINE L2 -241 3031 2892 23 24 0 24 chr4 21492624 21492648 -162796014 + AT_rich Low_complexity Low_complexity 1 25 -15 2025 116 10 10 chr4 21492648 21492941 -162795721 - AluSx SINE Alu -19 293 1 23 24 0 24 chr4 21492941 21492957 -162795705 + AT_rich Low_complexity Low_complexity 25 40 0 212 355 113 38 chr4 21493048 21493439 -162795223 - L2 LINE L2 -498 2816 2397 244 233 196 38 chr4 21494101 21494234 -162794428 - L2 LINE L2 -2 3311 3158 318 309 122 7 chr4 21494236 21494375 -162794287 + L2 LINE L2 3156 3310 -3 521 212 88 0 chr4 21494803 21494916 -162793746 + MER20 DNA MER1_type 95 217 -2 226 231 118 91 chr4 21495260 21495446 -162793216 + MIR SINE MIR 29 219 -43 2958 122 160 29 chr4 21497241 21498001 -162790661 - Tigger3b DNA MER2_type -1804 1224 565 1712 177 13 3 chr4 21498001 21498301 -162790361 + AluJb SINE Alu 4 306 -6 342 67 0 0 chr4 21498301 21498346 -162790316 + (TA)n Simple_repeat Simple_repeat 2 46 0 2958 122 160 29 chr4 21498346 21498506 -162790156 - Tigger3b DNA MER2_type -2463 565 427 2304 67 7 3 chr4 21498506 21498805 -162789857 + AluY SINE Alu 1 300 -11 2958 122 160 29 chr4 21498805 21498924 -162789738 - Tigger3b DNA MER2_type -2601 427 2 212 186 70 0 chr4 21499503 21499546 -162789116 - L2 LINE L2 0 3313 3268 1102 243 116 32 chr4 21499812 21500245 -162788417 + L1ME3A LINE L1 5685 6153 -17 885 212 0 0 chr4 21500359 21500524 -162788138 + FRAM SINE Alu 1 165 -1 309 234 99 54 chr4 21500546 21500657 -162788005 + MIR SINE MIR 147 262 0 183 442 18 6 chr4 21500712 21500877 -162787785 - L2 LINE L2 -459 2855 2689 202 347 42 0 chr4 21501026 21501098 -162787564 - MIR SINE MIR -159 103 29 21 36 0 0 chr4 21501168 21501196 -162787466 + AT_rich Low_complexity Low_complexity 1 28 0 205 321 0 0 chr4 21501234 21501315 -162787347 + (TA)n Simple_repeat Simple_repeat 2 82 0 24 53 0 0 chr4 21501968 21502006 -162786656 + AT_rich Low_complexity Low_complexity 1 38 0 417 327 170 28 chr4 21502494 21502858 -162785804 - L2 LINE L2 -560 2754 2339 418 57 0 0 chr4 21502862 21502915 -162785747 - MADE1 DNA Mariner 0 80 28 2107 164 28 17 chr4 21503602 21503962 -162784700 - THE1B LTR MaLR 0 364 1 11115 92 20 13 chr4 21503962 21504262 -162784400 - THE1B-int LTR MaLR 0 1580 1284 2204 96 17 3 chr4 21504262 21504553 -162784109 - AluSq SINE Alu -18 295 1 11115 92 20 13 chr4 21504553 21505821 -162782841 - THE1B-int LTR MaLR -296 1284 1 2284 136 28 17 chr4 21505821 21506181 -162782481 - THE1B LTR MaLR 0 364 1 318 258 32 32 chr4 21506443 21506536 -162782126 + L2 LINE L2 2669 2761 -553 21 0 0 0 chr4 21506658 21506679 -162781983 + AT_rich Low_complexity Low_complexity 1 21 0 748 251 64 5 chr4 21507866 21508069 -162780593 + MIR SINE MIR 48 262 0 313 232 192 0 chr4 21508253 21508378 -162780284 - L1MC4 LINE L1 -141 7901 7753 * 758 219 202 8 chr4 21508376 21508614 -162780048 - L1MC4 LINE L1 -1278 6764 6481 22 0 0 0 chr4 21509352 21509374 -162779288 + AT_rich Low_complexity Low_complexity 1 22 0 495 186 0 0 chr4 21509697 21509799 -162778863 + (TATG)n Simple_repeat Simple_repeat 2 103 0 2158 94 3 11 chr4 21509800 21510087 -162778575 - AluSx SINE Alu -27 285 1 21 0 0 0 chr4 21510760 21510781 -162777881 + AT_rich Low_complexity Low_complexity 1 21 0 1012 205 93 0 chr4 21510982 21511187 -162777475 + MER58A DNA MER1_type 1 224 0 773 289 81 78 chr4 21512208 21512775 -162775887 + L2 LINE L2 1689 2257 -1057 1919 138 17 0 chr4 21513153 21513444 -162775218 - AluSx SINE Alu -16 296 1 525 290 172 0 chr4 21515514 21515735 -162772927 - MIR SINE MIR -1 261 3 739 188 196 30 chr4 21515854 21516132 -162772530 + MER33 DNA MER1_type 1 363 0 3138 215 117 26 chr4 21516276 21517419 -162771243 + L1MC4 LINE L1 6707 8042 0 244 238 0 48 chr4 21518195 21518258 -162770404 + (CATATA)n Simple_repeat Simple_repeat 3 62 0 1598 121 9 0 chr4 21518466 21518697 -162769965 + AluSg/x SINE Alu 74 306 -6 205 161 0 0 chr4 21520078 21520109 -162768553 + (TG)n Simple_repeat Simple_repeat 2 32 0 21 89 0 0 chr4 21520330 21520386 -162768276 + GC_rich Low_complexity Low_complexity 1 56 0 26 0 0 0 chr4 21520784 21520810 -162767852 + GC_rich Low_complexity Low_complexity 1 26 0 24 32 0 0 chr4 21520897 21520928 -162767734 + GC_rich Low_complexity Low_complexity 1 31 0 306 73 0 0 chr4 21521027 21521068 -162767594 + (CGG)n Simple_repeat Simple_repeat 3 43 0 224 271 8 82 chr4 21522104 21522226 -162766436 + L2 LINE L2 3156 3268 -4 919 266 76 58 chr4 21522790 21523185 -162765477 - MLT1I LTR MaLR -3 406 5 224 91 23 0 chr4 21523406 21523450 -162765212 + (TC)n Simple_repeat Simple_repeat 2 46 0 216 67 0 0 chr4 21523450 21523480 -162765182 + (CA)n Simple_repeat Simple_repeat 1 30 0 1822 199 50 11 chr4 21523509 21523890 -162764772 - MSTD LTR MaLR 0 396 1 516 251 87 135 chr4 21524089 21524436 -162764226 - MLT1I LTR MaLR 0 409 80 1341 266 87 42 chr4 21524439 21524958 -162763704 - MLT1H LTR MaLR 0 549 8 2324 102 0 0 chr4 21525321 21525624 -162763038 + AluSq SINE Alu 1 303 -10 310 307 79 43 chr4 21525766 21526179 -162762483 - MLT1G LTR MaLR 0 590 120 24 0 0 0 chr4 21526637 21526661 -162762001 + AT_rich Low_complexity Low_complexity 1 24 0 586 309 39 0 chr4 21527834 21528015 -162760647 - MIR3 SINE MIR -5 203 16 366 280 6 95 chr4 21528049 21528217 -162760445 - MIR SINE MIR -59 203 51 23 33 0 0 chr4 21529433 21529463 -162759199 + AT_rich Low_complexity Low_complexity 1 30 0 1618 106 59 75 chr4 21529613 21529935 -162758727 + THE1C LTR MaLR 4 320 -55 516 108 0 155 chr4 21529950 21530079 -162758583 - MSTA LTR MaLR -319 109 1 2542 274 114 43 chr4 21530168 21531677 -162756985 + HAL1 LINE L1 306 2011 -496 240 235 39 0 chr4 21531741 21531792 -162756870 + L2 LINE L2 3205 3257 -15 186 103 0 0 chr4 21531794 21531823 -162756839 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 239 203 29 43 chr4 21531854 21531923 -162756739 + L2 LINE L2 3205 3272 0 802 282 180 53 chr4 21531951 21532039 -162756623 - MLT1K LTR MaLR 0 588 513 1571 146 75 19 chr4 21532039 21532306 -162756356 + AluSx SINE Alu 1 282 -30 261 0 0 0 chr4 21532315 21532344 -162756318 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 802 282 180 53 chr4 21532344 21532756 -162755906 - MLT1K LTR MaLR -81 507 13 930 188 109 43 chr4 21532935 21533238 -162755424 - MER33 DNA MER1_type -1 323 1 23 0 0 0 chr4 21533978 21534001 -162754661 + AT_rich Low_complexity Low_complexity 1 23 0 213 352 42 0 chr4 21534283 21534354 -162754308 - L2 LINE L2 -8 3264 3191 540 331 23 0 chr4 21534458 21534633 -162754029 + MLT1K LTR MaLR 84 262 -326 2183 138 30 28 chr4 21534674 21535037 -162753625 - THE1B LTR MaLR 0 364 1 318 326 27 48 chr4 21535665 21535812 -162752850 - HAL1 LINE L1 -3 2504 2361 2124 113 0 3 chr4 21535831 21536139 -162752523 + AluSx SINE Alu 1 307 0 2151 155 26 5 chr4 21536359 21536740 -162751922 + MLT1B LTR MaLR 1 389 -1 291 262 71 44 chr4 21536763 21536946 -162751716 - HAL1b LINE L1 -412 936 749 729 296 84 37 chr4 21537279 21537524 -162751138 - HAL1 LINE L1 -757 1750 1518 1745 191 74 29 chr4 21537524 21537901 -162750761 - MSTD LTR MaLR -2 394 1 729 296 84 37 chr4 21537901 21538595 -162750067 - HAL1 LINE L1 -989 1518 733 367 77 15 15 chr4 21538702 21538767 -162749895 + (TC)n Simple_repeat Simple_repeat 1 65 0 251 163 0 0 chr4 21538956 21538999 -162749663 - MLT1I LTR MaLR -267 142 100 801 179 43 0 chr4 21539202 21539342 -162749320 + FRAM SINE Alu 1 146 -30 339 65 0 0 chr4 21539344 21539390 -162749272 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 949 204 0 0 chr4 21539781 21539948 -162748714 + AluJb SINE Alu 130 296 -16 1277 236 57 9 chr4 21540473 21540804 -162747858 - MLT1C LTR MaLR 0 467 121 435 311 102 11 chr4 21540901 21541078 -162747584 - MER91A DNA MER1_type -1 195 3 233 235 12 99 chr4 21541199 21541280 -162747382 - L2 LINE L2 0 3313 3240 283 273 25 41 chr4 21541639 21541760 -162746902 + MARNA DNA Mariner 461 579 -7 344 219 86 33 chr4 21542005 21542164 -162746498 + L1M4 LINE L1 4357 4539 -1607 421 287 79 30 chr4 21542667 21542869 -162745793 - L2 LINE L2 -94 3219 3008 24 0 0 0 chr4 21543103 21543127 -162745535 + AT_rich Low_complexity Low_complexity 1 24 0 2549 202 86 17 chr4 21543411 21543995 -162744667 + MLT1E3 LTR MaLR 1 624 0 722 276 129 31 chr4 21544426 21544965 -162743697 - L1ME3A LINE L1 -219 5951 5317 2126 111 7 7 chr4 21544965 21545262 -162743400 - AluSx SINE Alu -15 297 1 722 276 129 31 chr4 21545262 21545418 -162743244 - L1ME3A LINE L1 -853 5317 5178 1609 220 11 35 chr4 21545428 21545800 -162742862 + MLT1A2 LTR MaLR 12 374 0 971 256 57 60 chr4 21545800 21546382 -162742280 - L1ME3A LINE L1 -963 5183 4604 562 273 58 34 chr4 21546405 21546819 -162741843 - L1MC5 LINE L1 -49 7912 7489 626 343 112 40 chr4 21547249 21548069 -162740593 - L2 LINE L2 -452 2862 1984 885 201 6 11 chr4 21548077 21548251 -162740411 - MLT1B LTR MaLR -11 379 207 313 149 115 115 chr4 21548240 21548327 -162740335 - MLT1B LTR MaLR -303 87 1 * 1764 167 7 11 chr4 21548546 21548833 -162739829 + AluJb SINE Alu 5 290 -22 1814 184 105 77 chr4 21549454 21549958 -162738704 + MLT2B1 LTR ERVL 1 518 -2 232 254 32 85 chr4 21550220 21550409 -162738253 + LTR67 LTR ERVL 356 534 -23 272 332 121 36 chr4 21550465 21550854 -162737808 - L2 LINE L2 -962 2352 1931 214 298 0 0 chr4 21551003 21551060 -162737602 - MIR SINE MIR -148 114 58 1841 131 42 63 chr4 21551095 21551478 -162737184 + THE1C LTR MaLR 1 375 0 587 317 18 22 chr4 21552055 21552279 -162736383 + MIR SINE MIR 31 253 -9 24 0 0 0 chr4 21553090 21553114 -162735548 + AT_rich Low_complexity Low_complexity 1 24 0 444 180 40 0 chr4 21553326 21553426 -162735236 - L1MA9 LINE L1 -2 6310 6207 518 124 11 0 chr4 21553475 21553564 -162735098 + (TTCC)n Simple_repeat Simple_repeat 3 92 0 191 317 49 12 chr4 21554363 21554445 -162734217 - L2 LINE L2 -50 3263 3179 289 291 103 34 chr4 21554778 21554953 -162733709 - MIR SINE MIR -56 206 20 2049 130 0 13 chr4 21555382 21555682 -162732980 + AluSx SINE Alu 1 296 -16 30 27 0 0 chr4 21556225 21556262 -162732400 + AT_rich Low_complexity Low_complexity 1 37 0 25 65 0 0 chr4 21556647 21556693 -162731969 + AT_rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chr4 21556817 21556839 -162731823 + AT_rich Low_complexity Low_complexity 1 22 0 279 156 0 0 chr4 21556961 21557006 -162731656 - MLT2B2 LTR ERVL -1 514 470 2065 227 45 22 chr4 21557056 21557519 -162731143 - MLT2B2 LTR ERVL -41 474 1 26 30 0 0 chr4 21557555 21557588 -162731074 + AT_rich Low_complexity Low_complexity 1 33 0 27 29 0 0 chr4 21557793 21557827 -162730835 + AT_rich Low_complexity Low_complexity 1 34 0 2585 207 81 7 chr4 21557857 21558460 -162730202 + MER82 DNA MER2_type 2 649 -4 392 288 131 38 chr4 21558713 21559026 -162729636 - HAL1 LINE L1 -936 1571 1230 1820 189 57 47 chr4 21559211 21559600 -162729062 - L1M4 LINE L1 -1150 5494 5097 1932 149 28 0 chr4 21559600 21559882 -162728780 - AluSx SINE Alu -22 290 1 1820 189 57 47 chr4 21559882 21559983 -162728679 - L1M4 LINE L1 -1547 5097 4999 929 285 12 12 chr4 21559962 21560292 -162728370 - L1M4 LINE L1 -2039 4605 4276 * 1294 188 59 49 chr4 21560308 21560596 -162728066 - AluJo SINE Alu -21 291 1 1451 218 69 17 chr4 21560596 21561118 -162727544 - L1M4 LINE L1 -3106 3538 2990 5109 225 62 39 chr4 21561133 21561977 -162726685 - L1M4 LINE L1 -4584 2062 1238 3005 187 21 44 chr4 21561977 21562591 -162726071 + MER77 LTR ERV1 2 601 -4 5109 225 62 39 chr4 21562591 21563753 -162724909 - L1M4 LINE L1 -5408 1238 16 2290 75 0 0 chr4 21564248 21564589 -162724073 - AluY SINE Alu 0 341 1 243 289 22 11 chr4 21564659 21564749 -162723913 + CT-rich Low_complexity Low_complexity 5 95 0 259 329 32 0 chr4 21564872 21565030 -162723632 + L1ME4a LINE L1 5758 5920 -201 1039 298 133 13 chr4 21565185 21565650 -162723012 + L2 LINE L2 2792 3311 -2 426 336 98 1 chr4 21565931 21566149 -162722513 - MIR SINE MIR -13 249 13 1226 239 91 48 chr4 21566153 21566765 -162721897 - L2 LINE L2 0 3313 2677 1399 251 89 8 chr4 21566768 21567163 -162721499 - L2 LINE L2 -929 2385 1959 1121 204 12 69 chr4 21567857 21568190 -162720472 + MLT2C1 LTR ERVL 36 349 -48 231 36 0 0 chr4 21568215 21568243 -162720419 + (CA)n Simple_repeat Simple_repeat 2 29 0 275 143 0 20 chr4 21568261 21568310 -162720352 + MLT2C1 LTR ERVL 350 397 0 310 402 96 4 chr4 21568455 21568704 -162719958 + L2 LINE L2 3001 3272 0 5235 150 25 26 chr4 21569514 21570535 -162718127 + L1MC3 LINE L1 6766 7784 -1 5238 88 58 11 chr4 21570540 21571360 -162717302 - L1MA3 LINE L1 0 6305 5447 5184 143 24 0 chr4 21571377 21572385 -162716277 + L1PA16 LINE L1 5130 6157 -9 1211 202 16 4 chr4 21572408 21572660 -162716002 - L1MB3 LINE L1 -147 6036 5782 194 128 26 0 chr4 21572918 21572957 -162715705 + GA-rich Low_complexity Low_complexity 5 44 0 279 0 0 0 chr4 21573707 21573738 -162714924 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 211 290 16 0 chr4 21573830 21573892 -162714770 + MIR SINE MIR 200 262 0 1326 228 171 16 chr4 21573955 21574500 -162714162 + LTR50 LTR ERVL 1 629 -166 312 274 69 0 chr4 21574642 21574744 -162713918 - MER63 DNA MER1_type -100 736 2 1907 153 0 17 chr4 21574938 21575226 -162713436 - AluJb SINE Alu -21 291 9 232 333 0 0 chr4 21576137 21576197 -162712465 - MIR SINE MIR -143 119 60 454 246 200 16 chr4 21577009 21577200 -162711462 + MIR SINE MIR 38 260 -2 708 185 7 174 chr4 21577656 21577926 -162710736 + MIR SINE MIR 13 237 -25 232 310 133 9 chr4 21578062 21578175 -162710487 - L2 LINE L2 -435 2879 2753 279 311 19 9 chr4 21578176 21578282 -162710380 - MER63A DNA MER1_type 0 210 104 1181 286 37 13 chr4 21578293 21578667 -162709995 - L2 LINE L2 -555 2759 2377 1997 158 21 34 chr4 21578760 21579139 -162709523 - MLT1A2 LTR MaLR 0 374 1 2334 87 0 10 chr4 21579359 21579659 -162709003 + AluY SINE Alu 1 297 -14 325 150 17 17 chr4 21579836 21579896 -162708766 + MIR SINE MIR 3 62 -200 567 281 35 30 chr4 21579897 21580100 -162708562 - MLT1I LTR MaLR -121 288 85 241 302 47 47 chr4 21580567 21580696 -162707966 + MIR SINE MIR 109 237 -25 345 318 27 18 chr4 21582059 21582169 -162706493 + MIR SINE MIR 81 191 -71 453 299 64 11 chr4 21582186 21582373 -162706289 - L2 LINE L2 -13 3300 3104 1819 163 45 13 chr4 21582376 21582789 -162705873 + MER31A LTR ERV1 1 438 -28 852 337 140 38 chr4 21582940 21583841 -162704821 - L2 LINE L2 -339 2975 1983 367 267 8 0 chr4 21583858 21583989 -162704673 + L1MB7 LINE L1 6035 6166 -18 6529 100 8 11 chr4 21584104 21586415 -162702247 + L1PA10 LINE L1 3781 6167 -1 23 0 0 0 chr4 21586566 21586589 -162702073 + AT_rich Low_complexity Low_complexity 1 23 0 1493 134 4 61 chr4 21586590 21586792 -162701870 - L1PB4 LINE L1 -15 6141 5958 1932 129 10 35 chr4 21586792 21587102 -162701560 - AluY SINE Alu -9 302 1 1493 134 4 61 chr4 21587102 21587176 -162701486 - L1PB4 LINE L1 -198 5958 5881 768 308 83 9 chr4 21587236 21587668 -162700994 + Charlie7 DNA MER1_type 56 519 -2093 512 224 32 68 chr4 21587778 21587997 -162700665 + Charlie7 DNA MER1_type 2170 2380 -232 20139 76 1 0 chr4 21588360 21591120 -162697542 + L1PA5 LINE L1 11 2773 -3373 21225 39 3 0 chr4 21591538 21594911 -162693751 + L1PA5 LINE L1 2777 6152 -2 296 298 100 32 chr4 21594936 21595215 -162693447 + L1ME4a LINE L1 5600 5897 -224 1716 271 48 57 chr4 21595631 21596299 -162692363 - L2 LINE L2 -41 3272 2622 2949 114 38 59 chr4 21596299 21596759 -162691903 + L1MB4 LINE L1 5608 6055 -125 2916 74 0 11 chr4 21596759 21597138 -162691524 - THE1C LTR MaLR 0 375 1 2949 114 38 59 chr4 21597138 21597256 -162691406 + L1MB4 LINE L1 6055 6174 -6 1716 271 48 57 chr4 21597256 21597580 -162691082 - L2 LINE L2 -691 2622 2297 207 209 0 0 chr4 21597731 21597774 -162690888 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 3489 204 52 17 chr4 21599374 21600381 -162688281 - MER69 DNA AcHobo -34 2492 1451 1308 211 31 3 chr4 21600482 21600776 -162687886 - MER69 DNA AcHobo -2224 302 1 187 344 45 45 chr4 21600808 21600965 -162687697 + L2 LINE L2 2827 2983 -289 254 267 129 0 chr4 21601167 21601268 -162687394 + L2 LINE L2 3191 3304 -9 1125 244 50 0 chr4 21601339 21601581 -162687081 + MIR SINE MIR 8 261 -1 321 269 21 11 chr4 21601681 21601774 -162686888 - MIR3 SINE MIR -20 188 95 34 42 0 0 chr4 21602288 21602336 -162686326 + AT_rich Low_complexity Low_complexity 1 48 0 254 29 29 0 chr4 21602857 21602892 -162685770 + (TAGA)n Simple_repeat Simple_repeat 2 37 0 32 0 0 0 chr4 21602996 21603028 -162685634 + AT_rich Low_complexity Low_complexity 1 32 0 316 24 0 0 chr4 21603028 21603070 -162685592 - L1PA6 LINE L1 -3 6151 6110 23 0 0 0 chr4 21603134 21603157 -162685505 + AT_rich Low_complexity Low_complexity 1 23 0 2306 119 0 0 chr4 21604068 21604378 -162684284 - AluSx SINE Alu -2 310 1 616 300 105 46 chr4 21604555 21605058 -162683604 + MLT1K LTR MaLR 20 552 -36 1908 167 49 32 chr4 21605221 21605743 -162682919 - MLT2A2 LTR ERVL -23 531 1 10733 86 5 5 chr4 21605743 21607215 -162681447 - HERVL-A2 LTR ERVL 0 5654 4183 301 317 0 0 chr4 21607254 21607336 -162681326 + L2 LINE L2 2891 2972 -300 496 256 60 8 chr4 21607678 21607811 -162680851 - MIR SINE MIR -73 189 50 612 300 27 34 chr4 21609098 21609115 -162679547 - MIR SINE MIR 0 262 2 743 313 29 24 chr4 21609115 21609361 -162679301 - MIR SINE MIR -14 248 2 462 258 129 54 chr4 21609460 21609646 -162679016 - MIR SINE MIR -44 218 19 23 0 0 0 chr4 21610220 21610243 -162678419 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr4 21610345 21610370 -162678292 + AT_rich Low_complexity Low_complexity 1 25 0 195 367 63 13 chr4 21611688 21611846 -162676816 + L2 LINE L2 3107 3272 0 251 157 20 0 chr4 21611942 21611993 -162676669 + GA-rich Low_complexity Low_complexity 6 57 0 600 243 85 23 chr4 21612003 21612180 -162676482 - MIR SINE MIR -16 246 59 398 248 26 26 chr4 21613386 21613499 -162675163 - LTR67 LTR ERVL -419 138 26 190 227 23 0 chr4 21613751 21613795 -162674867 - L2 LINE L2 -12 3260 3216 332 299 104 19 chr4 21613800 21613954 -162674708 + MIR SINE MIR 13 179 -83 229 289 134 0 chr4 21614061 21614158 -162674504 - MIR SINE MIR -131 131 22 426 39 0 0 chr4 21614524 21614576 -162674086 + (TA)n Simple_repeat Simple_repeat 1 52 0 2124 148 0 66 chr4 21615302 21615740 -162672922 + L1MA5 LINE L1 5892 6300 0 5231 41 6 0 chr4 21617986 21618646 -162670016 + L1PA5 LINE L1 5498 6161 0 469 244 0 0 chr4 21619089 21619204 -162669458 + L1MA9 LINE L1 6174 6288 -24 1062 308 113 31 chr4 21619506 21620334 -162668328 - L2 LINE L2 0 3313 2397 2302 147 36 5 chr4 21620724 21621111 -162667551 - MSTA LTR MaLR -29 399 1 894 267 18 13 chr4 21621300 21621525 -162667137 + MIR SINE MIR 11 236 -26 539 276 83 24 chr4 21621589 21621843 -162666819 + L1ME LINE L1 5474 5742 -379 27 29 0 0 chr4 21621919 21621953 -162666709 + AT_rich Low_complexity Low_complexity 1 34 0 2617 194 65 76 chr4 21621953 21622754 -162665908 - L1ME2 LINE L1 -19 6145 5354 1388 235 68 7 chr4 21622764 21623189 -162665473 - L1ME2 LINE L1 -1070 5076 4626 634 278 27 44 chr4 21623201 21623496 -162665166 + L1MC4a LINE L1 5647 5936 -1872 208 191 0 21 chr4 21623496 21623543 -162665119 + (TA)n Simple_repeat Simple_repeat 1 46 0 698 271 143 40 chr4 21623549 21623900 -162664762 - MLT1K LTR MaLR -75 513 127 716 217 5 26 chr4 21624573 21624762 -162663900 + L1MA2 LINE L1 6117 6301 -3 21 0 0 0 chr4 21625472 21625493 -162663169 + AT_rich Low_complexity Low_complexity 1 21 0 1442 247 48 10 chr4 21625618 21625764 -162662898 - HsTC2 DNA Tc2 2 1900 1761 1607 167 33 25 chr4 21625764 21626039 -162662623 + AluJb SINE Alu 1 277 -35 1442 247 48 10 chr4 21626039 21626305 -162662357 - HsTC2 DNA Tc2 -137 1761 1296 658 304 86 52 chr4 21626296 21626717 -162661945 + MLT1J LTR MaLR 31 465 -46 * 32 43 0 0 chr4 21627808 21627854 -162660808 + AT_rich Low_complexity Low_complexity 1 46 0 554 168 22 36 chr4 21629030 21629167 -162659495 - L1MC1 LINE L1 0 6333 6199 321 235 20 41 chr4 21629438 21629536 -162659126 + L3 LINE CR1 1481 1576 -1 28 0 0 0 chr4 21629645 21629673 -162658989 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 21630787 21630815 -162657847 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr4 21631525 21631548 -162657114 + AT_rich Low_complexity Low_complexity 1 23 0 7745 19 0 3 chr4 21633304 21634881 -162653781 + L1PA2 LINE L1 4579 6152 -3 889 288 94 38 chr4 21635582 21636042 -162652620 + HAL1b LINE L1 41 541 -807 1692 192 79 84 chr4 21636042 21636598 -162652064 + MLT2B3 LTR ERVL 1 553 -1 889 288 94 38 chr4 21636598 21636710 -162651952 + HAL1b LINE L1 541 645 -703 2579 215 9 40 chr4 21636861 21637108 -162651554 + MER68 LTR ERV1 25 278 -284 2588 45 0 13 chr4 21637108 21637419 -162651243 + AluY SINE Alu 1 307 -4 2579 215 9 40 chr4 21637419 21637725 -162650937 + MER68 LTR ERV1 278 561 -1 2225 196 99 4 chr4 21638149 21638623 -162650039 + MLT2B1 LTR ERVL 2 520 0 249 226 121 40 chr4 21639088 21639212 -162649450 + L1 LINE L1 2896 3029 -3117 300 316 82 39 chr4 21639443 21639649 -162649013 + L1 LINE L1 3085 3299 -2847 1125 118 0 64 chr4 21639793 21639996 -162648666 - L1PA8 LINE L1 0 6172 5983 499 258 96 65 chr4 21640057 21640579 -162648083 + LTR50 LTR ERVL 18 506 -17 329 269 35 0 chr4 21640580 21640758 -162647904 + MIR SINE MIR 107 249 -13 241 317 70 39 chr4 21640797 21641081 -162647581 + L1 LINE L1 3512 3804 -2342 247 145 133 60 chr4 21641158 21641241 -162647421 + L2 LINE L2 2118 2206 -1108 578 253 27 50 chr4 21641241 21641420 -162647242 + MER58C DNA MER1_type 30 214 -1 568 215 8 0 chr4 21641471 21641601 -162647061 - L1ME3A LINE L1 -13 6157 6027 2097 105 10 3 chr4 21642227 21642521 -162646141 - AluSx SINE Alu -16 296 1 31 26 0 0 chr4 21642522 21642560 -162646102 + AT_rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr4 21642602 21642626 -162646036 + AT_rich Low_complexity Low_complexity 1 24 0 466 297 162 38 chr4 21642823 21643163 -162645499 - L2 LINE L2 -5 3308 2927 842 113 7 0 chr4 21643455 21643597 -162645065 + (TTCC)n Simple_repeat Simple_repeat 1 143 0 254 311 0 71 chr4 21644943 21645126 -162643536 + L2 LINE L2 2804 2973 -341 542 299 116 37 chr4 21645283 21645365 -162643297 - MLT1J2 LTR MaLR -3 447 373 1646 201 58 48 chr4 21645365 21645827 -162642835 - MLT1C LTR MaLR 0 467 1 542 299 116 37 chr4 21645827 21646099 -162642563 - MLT1J2 LTR MaLR -77 373 65 1027 201 114 27 chr4 21646108 21646406 -162642256 - MER5C DNA MER1_type 0 324 1 439 306 9 46 chr4 21646437 21646656 -162642006 + L2 LINE L2 3089 3299 -14 484 251 64 59 chr4 21647387 21647438 -162641224 - MIR SINE MIR -4 258 209 1928 136 44 0 chr4 21647438 21647732 -162640930 - AluSx SINE Alu -4 308 2 484 251 64 59 chr4 21647732 21647867 -162640795 - MIR SINE MIR -53 209 71 189 226 0 0 chr4 21648020 21648073 -162640589 + (TTATG)n Simple_repeat Simple_repeat 3 55 0 342 273 55 27 chr4 21648833 21648943 -162639719 + L2 LINE L2 3160 3272 0 262 349 41 14 chr4 21649019 21649165 -162639497 + MIR SINE MIR 59 208 -54 342 45 0 0 chr4 21649165 21649209 -162639453 + (CA)n Simple_repeat Simple_repeat 1 44 0 5726 229 12 11 chr4 21649209 21650644 -162638018 + L1 LINE L1 2956 4393 -1753 282 29 0 0 chr4 21650644 21650679 -162637983 + (CA)n Simple_repeat Simple_repeat 2 36 0 1121 223 54 11 chr4 21650682 21650784 -162637878 + AluJo SINE Alu 19 115 -197 293 0 0 26 chr4 21650784 21650822 -162637840 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 1121 223 54 11 chr4 21650822 21650979 -162637683 + AluJo SINE Alu 115 289 -23 30 27 0 0 chr4 21650979 21651016 -162637646 + AT_rich Low_complexity Low_complexity 1 37 0 565 191 0 0 chr4 21651098 21651187 -162637475 - MER7A DNA MER2_type -259 87 1 6882 169 34 15 chr4 21651274 21652720 -162635942 + L1M2 LINE L1 3956 5431 -743 1144 248 98 40 chr4 21653273 21653802 -162634860 + MLT1E1 LTR MaLR 10 646 -8 937 256 104 16 chr4 21654286 21654603 -162634059 + MLT1J LTR MaLR 17 361 -150 524 242 54 65 chr4 21654628 21654814 -162633848 + MLT1J LTR MaLR 1 184 -327 387 374 34 0 chr4 21655071 21655218 -162633444 + L2 LINE L2 3121 3272 0 2180 127 0 0 chr4 21655462 21655761 -162632901 - AluSx SINE Alu -13 299 1 2100 123 45 31 chr4 21655849 21656208 -162632454 + THE1B LTR MaLR 1 364 0 441 277 7 15 chr4 21656249 21656386 -162632276 + MLT1H LTR MaLR 25 160 -389 4287 119 176 93 chr4 21656531 21657952 -162630710 - pTR5 LTR ERV1 0 2438 743 2384 108 0 0 chr4 21658865 21659171 -162629491 - AluSx SINE Alu -6 306 1 549 299 61 70 chr4 21659334 21659792 -162628870 - MLT1J LTR MaLR -50 461 8 1253 170 62 0 chr4 21660419 21660660 -162628002 - L1PB4 LINE L1 -4 6152 5897 193 0 0 86 chr4 21660663 21660698 -162627964 + (TTAA)n Simple_repeat Simple_repeat 1 32 0 419 190 0 25 chr4 21660699 21660778 -162627884 - FLAM_A SINE Alu -19 123 47 3602 151 32 1 chr4 21660792 21661753 -162626909 - L1PB4 LINE L1 -277 5879 4891 762 240 15 10 chr4 21661858 21662058 -162626604 - L1PB4 LINE L1 0 6156 5956 523 238 11 33 chr4 21662158 21662339 -162626323 - L1ME1 LINE L1 -193 5973 5797 2386 228 74 14 chr4 21662352 21663229 -162625433 - L1M4 LINE L1 -2769 3377 2448 594 230 46 5 chr4 21663228 21663424 -162625238 + L1ME1 LINE L1 5004 5207 -939 * 1170 237 62 25 chr4 21663429 21663783 -162624879 - MLT1A2 LTR MaLR 0 374 8 1639 218 56 126 chr4 21663800 21664510 -162624152 + L1ME1 LINE L1 5218 5844 -322 5110 97 12 0 chr4 21664510 21665193 -162623469 + LTR8 LTR ERV1 1 691 0 1639 218 56 126 chr4 21665193 21665491 -162623171 + L1ME1 LINE L1 5844 6161 -5 625 245 245 19 chr4 21665529 21665892 -162622770 - LTR50 LTR ERVL -349 446 2 242 385 59 30 chr4 21665893 21666028 -162622634 - L2 LINE L2 -31 3241 3103 184 402 0 24 chr4 21666452 21666534 -162622128 + MER5B DNA MER1_type 2 81 -97 504 302 57 60 chr4 21666555 21666853 -162621809 + L2 LINE L2 3016 3312 -1 21 0 0 0 chr4 21667077 21667098 -162621564 + AT_rich Low_complexity Low_complexity 1 21 0 415 293 127 28 chr4 21667282 21667494 -162621168 - MIR SINE MIR 0 262 30 222 353 12 0 chr4 21667618 21667703 -162620959 + L2 LINE L2 3228 3313 0 401 292 64 30 chr4 21667786 21667988 -162620674 - LTR33A LTR ERVL 0 523 315 307 310 86 20 chr4 21668039 21668236 -162620426 - LTR33A LTR ERVL -310 213 4 1387 140 108 7 chr4 21668423 21668772 -162619890 - Ricksha DNA DNA 0 2854 2412 * 2375 195 38 15 chr4 21668763 21668871 -162619791 - Ricksha DNA DNA -2636 610 506 2331 125 5 35 chr4 21668871 21669246 -162619416 + THE1B LTR MaLR 1 364 0 2375 195 38 15 chr4 21669246 21669666 -162618996 - Ricksha DNA DNA -2740 506 70 621 242 57 32 chr4 21669704 21669970 -162618692 + MLT1H LTR MaLR 221 547 -2 708 276 31 16 chr4 21669973 21670165 -162618497 + MIR SINE MIR 57 251 -11 33 25 0 0 chr4 21671167 21671207 -162617455 + AT_rich Low_complexity Low_complexity 1 40 0 608 299 134 0 chr4 21671226 21671450 -162617212 + MIR SINE MIR 3 256 -6 231 204 204 11 chr4 21671450 21671543 -162617119 - L1ME4a LINE L1 -33 6088 5978 387 245 121 58 chr4 21671802 21672125 -162616537 + L1MC/D LINE L1 5491 5832 -303 2362 117 19 19 chr4 21672205 21672580 -162616082 - THE1C LTR MaLR 0 375 1 23 0 0 0 chr4 21672848 21672871 -162615791 + AT_rich Low_complexity Low_complexity 1 23 0 7779 21 0 0 chr4 21673082 21674327 -162614335 - L1PA2 LINE L1 0 6155 4911 8790 26 1 0 chr4 21674329 21675417 -162613245 + L1PA2 LINE L1 3822 4910 -1236 377 222 44 11 chr4 21675630 21675720 -162612942 + MER5A DNA MER1_type 2 94 -95 260 157 0 39 chr4 21676397 21676448 -162612214 - L2 LINE L2 0 3313 3265 1739 93 4 8 chr4 21676782 21677039 -162611623 + L1PA6 LINE L1 5894 6149 -5 1707 213 42 8 chr4 21677972 21678325 -162610337 - MLT1A1 LTR MaLR 0 365 1 300 341 239 16 chr4 21678658 21678913 -162609749 + L2 LINE L2 2961 3272 0 432 262 16 8 chr4 21679247 21679373 -162609289 - MIR SINE MIR -55 207 81 276 352 0 0 chr4 21679487 21679575 -162609087 - MIR SINE MIR 0 262 175 5405 143 19 4 chr4 21679600 21680559 -162608103 + L1MA4 LINE L1 5328 6300 0 22 0 0 0 chr4 21680853 21680875 -162607787 + AT_rich Low_complexity Low_complexity 1 22 0 366 166 1 0 chr4 21680892 21680969 -162607693 + MSTD LTR MaLR 328 396 0 615 314 0 0 chr4 21680969 21681122 -162607540 - MIR SINE MIR -109 153 1 533 296 0 0 chr4 21681127 21681252 -162607410 + MIR SINE MIR 20 144 -118 181 270 0 0 chr4 21681280 21681317 -162607345 + MIR SINE MIR 223 259 -3 301 289 138 28 chr4 21681702 21681955 -162606707 - MLT1J LTR MaLR -3 508 228 2327 108 3 0 chr4 21682008 21682314 -162606348 - AluSq SINE Alu -6 307 1 381 297 69 14 chr4 21682433 21682739 -162605923 + LTR33 LTR ERVL 19 367 -154 213 264 57 0 chr4 21682950 21683003 -162605659 - L2 LINE L2 -2 3311 3256 239 284 0 0 chr4 21683216 21683283 -162605379 - MLT1L LTR MaLR -340 275 209 467 295 81 43 chr4 21683433 21683643 -162605019 + MIR SINE MIR 7 224 -38 200 205 0 77 chr4 21684556 21684634 -162604028 - MIR SINE MIR -46 216 145 968 205 38 0 chr4 21684738 21684948 -162603714 - MER89 LTR ERV1 -7 552 335 463 202 13 58 chr4 21685087 21685298 -162603364 - MER89 LTR ERV1 -259 300 1 277 314 40 65 chr4 21685364 21685488 -162603174 - MIR3 SINE MIR -74 134 14 997 277 68 43 chr4 21685946 21686387 -162602275 - L2 LINE L2 -5 3308 2857 1131 128 6 0 chr4 21687394 21687566 -162601096 + MER2 DNA MER2_type 1 173 -172 369 182 15 0 chr4 21687613 21687679 -162600983 + MER2 DNA MER2_type 279 345 0 519 277 151 0 chr4 21687722 21687881 -162600781 - MER5A DNA MER1_type 0 189 7 188 280 100 0 chr4 21688824 21688874 -162599788 - L2 LINE L2 -9 3304 3250 817 55 18 9 chr4 21688882 21688991 -162599671 - AluY SINE Alu -7 304 195 1872 98 0 0 chr4 21689336 21689572 -162599090 - AluSx SINE Alu -24 288 53 302 309 32 11 chr4 21692820 21692914 -162595748 - MIR SINE MIR -132 130 35 198 316 53 0 chr4 21693008 21693084 -162595578 + MIR SINE MIR 178 257 -5 503 240 156 13 chr4 21693122 21693276 -162595386 + MER5A DNA MER1_type 14 189 0 292 246 14 0 chr4 21693381 21693450 -162595212 - L1MC4a LINE L1 -1067 6741 6672 * 339 241 74 0 chr4 21693447 21693555 -162595107 - L1MC4 LINE L1 -1468 6574 6459 260 393 8 0 chr4 21693654 21693776 -162594886 - L3 LINE CR1 -132 1445 1323 211 213 64 96 chr4 21693885 21693979 -162594683 + MIR SINE MIR 91 181 -81 735 252 64 6 chr4 21694087 21694344 -162594318 + Tigger5 DNA MER2_type 120 2323 0 226 286 16 0 chr4 21694439 21694502 -162594160 + CT-rich Low_complexity Low_complexity 1 64 0 228 279 221 10 chr4 21694502 21694606 -162594056 - L2 LINE L2 -1 3312 3187 21 0 0 0 chr4 21694614 21694635 -162594027 + AT_rich Low_complexity Low_complexity 1 21 0 387 274 41 48 chr4 21694669 21694815 -162593847 - L2 LINE L2 -50 3263 3119 754 243 21 5 chr4 21695881 21696070 -162592592 + LTR33 LTR ERVL 3 194 -327 305 290 63 63 chr4 21696122 21696329 -162592333 + LTR33 LTR ERVL 304 510 -11 247 288 170 26 chr4 21696422 21696575 -162592087 + MIR SINE MIR 52 226 -36 1383 212 12 12 chr4 21696911 21697256 -162591406 - MLT1A1 LTR MaLR -16 349 5 421 271 25 25 chr4 21698029 21698147 -162590515 - L2 LINE L2 -2 3311 3194 186 43 0 0 chr4 21698182 21698205 -162590457 + (CAAAG)n Simple_repeat Simple_repeat 2 24 0 1833 142 69 28 chr4 21699362 21699722 -162588940 - THE1C LTR MaLR 0 375 1 275 286 16 0 chr4 21700137 21700200 -162588462 + L2 LINE L2 3246 3309 -4 264 193 18 37 chr4 21701208 21701317 -162587345 + (TA)n Simple_repeat Simple_repeat 2 108 0 878 288 0 9 chr4 21703254 21703466 -162585196 + MIR SINE MIR 51 260 -2 192 319 115 92 chr4 21703649 21703909 -162584753 + L2 LINE L2 3007 3272 0 3560 209 15 24 chr4 21704053 21705054 -162583608 + L1MB2 LINE L1 4436 5431 -740 1230 160 5 19 chr4 21705054 21705252 -162583410 + AluJb SINE Alu 90 286 -26 360 0 0 0 chr4 21705252 21705292 -162583370 + (CA)n Simple_repeat Simple_repeat 2 41 0 1230 160 5 19 chr4 21705292 21705305 -162583357 + AluJb SINE Alu 286 298 -14 1462 180 33 0 chr4 21705309 21705609 -162583053 + L1MB2 LINE L1 5431 5740 -428 5038 132 13 13 chr4 21705640 21707348 -162581314 - L1PA15 LINE L1 -1 6815 5058 10770 229 25 11 chr4 21707455 21711185 -162577477 - L1PA15 LINE L1 -1722 5075 1280 1290 251 16 39 chr4 21711551 21711937 -162576725 - L1PA15 LINE L1 -6063 724 348 2104 143 47 19 chr4 21711939 21712364 -162576298 + L1MB2 LINE L1 5733 6169 -2 238 272 88 44 chr4 21712715 21712829 -162575833 - MIR SINE MIR -123 139 21 204 182 0 0 chr4 21713176 21713220 -162575442 + (TG)n Simple_repeat Simple_repeat 2 45 0 64 14 0 0 chr4 21713521 21713592 -162575070 + AT_rich Low_complexity Low_complexity 1 71 0 238 309 25 113 chr4 21713803 21713980 -162574682 + L2 LINE L2 2432 2576 -738 1296 180 90 51 chr4 21713980 21714336 -162574326 + MLT1A2 LTR MaLR 1 370 -4 238 309 25 113 chr4 21714336 21714440 -162574222 + L2 LINE L2 2576 2688 -626 1912 219 38 11 chr4 21714444 21714975 -162573687 + L1ME2 LINE L1 5618 6162 -2 978 171 40 11 chr4 21715218 21715394 -162573268 - AluJo SINE Alu -5 307 127 983 293 75 16 chr4 21715820 21716206 -162572456 - LTR16C LTR ERVL -9 482 74 22 0 0 0 chr4 21716468 21716490 -162572172 + AT_rich Low_complexity Low_complexity 1 22 0 211 227 0 23 chr4 21716678 21716722 -162571940 + MIR SINE MIR 107 149 -59 210 326 21 11 chr4 21716787 21716882 -162571780 - L2 LINE L2 -211 3061 2966 240 329 71 34 chr4 21717035 21717330 -162571332 + L2 LINE L2 2670 2975 -339 24 0 0 0 chr4 21717369 21717393 -162571269 + AT_rich Low_complexity Low_complexity 1 24 0 32606 98 16 25 chr4 21717398 21723587 -162565075 - L1PA6 LINE L1 -3 6151 11 210 370 9 76 chr4 21723597 21723808 -162564854 + L2 LINE L2 2990 3186 -86 1902 136 0 0 chr4 21723956 21724233 -162564429 - AluSx SINE Alu 0 302 26 24 0 0 0 chr4 21724907 21724931 -162563731 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr4 21724953 21724977 -162563685 + AT_rich Low_complexity Low_complexity 1 24 0 228 342 47 80 chr4 21725447 21725722 -162562940 - L2 LINE L2 -40 3232 2967 2455 124 13 5 chr4 21726825 21727197 -162561465 - THE1C LTR MaLR 0 375 1 4885 117 30 7 chr4 21727198 21727958 -162560704 - THE1C-int LTR MaLR -1 1579 802 364 265 6 77 chr4 21727958 21728128 -162560534 + L2 LINE L2 3154 3311 -2 180 0 0 0 chr4 21728153 21728173 -162560489 + (T)n Simple_repeat Simple_repeat 1 20 0 1104 159 0 0 chr4 21728195 21728365 -162560297 + THE1-int LTR MaLR 1087 1256 -324 1895 113 0 0 chr4 21728365 21728613 -162560049 - AluSq SINE Alu -65 248 1 217 225 0 0 chr4 21728620 21728660 -162560002 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 973 293 39 81 chr4 21728671 21729187 -162559475 + L2 LINE L2 2807 3300 -13 387 321 29 0 chr4 21729241 21729381 -162559281 + MIR SINE MIR 43 186 -76 769 291 84 4 chr4 21729401 21729638 -162559024 - MIR SINE MIR 0 262 7 230 209 0 0 chr4 21729632 21729675 -162558987 + MIR SINE MIR 219 261 -1 * 38 39 0 0 chr4 21729846 21729898 -162558764 + AT_rich Low_complexity Low_complexity 1 52 0 716 273 16 16 chr4 21730495 21730678 -162557984 - MIR3 SINE MIR -3 205 23 229 254 79 0 chr4 21730893 21731007 -162557655 - L1ME4a LINE L1 -3 6118 5996 23 33 0 0 chr4 21731192 21731222 -162557440 + AT_rich Low_complexity Low_complexity 1 30 0 340 320 162 28 chr4 21731223 21731611 -162557051 - L1M4 LINE L1 -2510 3636 3197 1228 293 54 19 chr4 21731614 21732037 -162556625 + LTR16A LTR ERVL 7 444 -6 3508 287 57 24 chr4 21732046 21733367 -162555295 + HERV16 LTR ERVL 20 1384 -3612 182 200 50 50 chr4 21733384 21733444 -162555218 - L2 LINE L2 -2828 486 427 305 219 27 14 chr4 21733457 21733530 -162555132 + HERV16 LTR ERVL 1477 1550 -3446 550 189 19 9 chr4 21733582 21733688 -162554974 + HERV16 LTR ERVL 1688 1794 -3202 267 235 24 0 chr4 21733712 21733797 -162554865 + L1ME3A LINE L1 3431 3517 -2629 962 155 109 0 chr4 21733853 21734027 -162554635 + MLT1D LTR MaLR 313 505 0 255 219 24 12 chr4 21734091 21734173 -162554489 + L1ME3A LINE L1 4472 4554 -1592 1168 232 92 41 chr4 21734202 21734638 -162554024 + MLT1C LTR MaLR 10 467 0 318 301 20 105 chr4 21734642 21734795 -162553867 + MIR SINE MIR 2 141 -121 241 287 39 78 chr4 21734968 21735198 -162553464 + L1ME3A LINE L1 4674 4894 -1252 1936 100 100 0 chr4 21735287 21735546 -162553116 + AluSg SINE Alu 6 290 -20 661 305 72 21 chr4 21735871 21736183 -162552479 + L1ME3A LINE L1 5280 5575 -595 2301 205 72 33 chr4 21736183 21736753 -162551909 + MLT1E LTR MaLR 2 593 0 661 305 72 21 chr4 21736753 21737090 -162551572 + L1ME3A LINE L1 5575 5962 -208 290 273 58 7 chr4 21737785 21737924 -162550738 + HAL1 LINE L1 1407 1552 -955 2192 191 34 32 chr4 21738095 21738592 -162550070 - MLT1D LTR MaLR -7 498 1 253 227 0 118 chr4 21738660 21738770 -162549892 + MIR SINE MIR 39 135 -73 207 317 0 0 chr4 21738779 21738839 -162549823 - L2 LINE L2 -4 3309 3250 227 246 0 35 chr4 21738881 21738938 -162549724 + MIR SINE MIR 196 250 -12 272 305 110 0 chr4 21739047 21739129 -162549533 - L2 LINE L2 -20 3252 3162 4173 123 5 2 chr4 21739303 21739915 -162548747 - L1PA16 LINE L1 -9 6157 5544 729 205 0 0 chr4 21740291 21740418 -162548244 - FLAM_A SINE Alu -6 127 1 21 0 0 0 chr4 21740847 21740868 -162547794 + AT_rich Low_complexity Low_complexity 1 21 0 598 279 79 6 chr4 21740876 21741041 -162547621 - MIR SINE MIR -55 207 31 283 388 7 7 chr4 21741534 21741686 -162546976 - L2 LINE L2 -594 2720 2569 264 227 0 30 chr4 21741833 21741899 -162546763 - L2 LINE L2 0 3313 3250 251 408 8 0 chr4 21742321 21742441 -162546221 + MIR SINE MIR 34 153 -75 21 0 0 0 chr4 21742515 21742536 -162546126 + AT_rich Low_complexity Low_complexity 1 21 0 509 270 223 9 chr4 21742664 21742879 -162545783 - MIR SINE MIR 0 262 2 313 318 153 11 chr4 21742956 21743145 -162545517 + MIR SINE MIR 3 218 -44 514 253 100 7 chr4 21743642 21743792 -162544870 + MIR SINE MIR 33 196 -66 604 129 0 10 chr4 21744117 21744218 -162544444 - LTR12 LTR ERV1 0 714 615 287 241 23 0 chr4 21744240 21744327 -162544335 - LTR30 LTR ERV1 -110 612 524 681 128 5 5 chr4 21744414 21744534 -162544128 - LTR12 LTR ERV1 -480 234 1 290 277 57 7 chr4 21744558 21744699 -162543963 + L1MC5 LINE L1 7272 7419 -542 * 378 290 38 1 chr4 21744697 21744850 -162543812 + L1MC4 LINE L1 7526 7775 -220 1996 148 33 33 chr4 21744871 21745235 -162543427 - THE1B LTR MaLR 0 364 1 250 282 0 14 chr4 21745354 21745425 -162543237 - MER5B DNA MER1_type -88 90 21 407 222 51 8 chr4 21745453 21745570 -162543092 + L1ME LINE L1 5670 5791 -379 835 228 96 28 chr4 21746772 21747022 -162541640 - MLT1H LTR MaLR 0 549 283 465 247 78 0 chr4 21747429 21747583 -162541079 + MER103 DNA DNA 1 166 0 200 339 30 55 chr4 21748174 21748339 -162540323 + MIR SINE MIR 88 248 -14 493 258 136 72 chr4 21748472 21748848 -162539814 + L2 LINE L2 2901 3300 -13 214 267 100 92 chr4 21749183 21749303 -162539359 + L2 LINE L2 2976 3096 -176 180 0 0 0 chr4 21749377 21749397 -162539265 + (T)n Simple_repeat Simple_repeat 1 20 0 1052 306 92 4 chr4 21749405 21749859 -162538803 + MLT1K LTR MaLR 95 588 0 693 351 39 9 chr4 21751067 21751397 -162537265 + L2 LINE L2 2636 2975 -339 962 194 35 31 chr4 21751423 21751650 -162537012 + MLT1D LTR MaLR 5 232 -273 478 315 165 30 chr4 21751690 21752343 -162536319 - L2 LINE L2 -163 3109 2366 13689 188 32 8 chr4 21752614 21754376 -162534286 - L1PB1 LINE L1 0 6867 5149 234 0 0 0 chr4 21754376 21754402 -162534260 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 13689 188 32 8 chr4 21754402 21758155 -162530507 - L1PB1 LINE L1 -1718 5149 1094 3112 233 70 15 chr4 21758159 21759133 -162529529 - L1PB1 LINE L1 -5817 1046 20 1953 160 7 0 chr4 21759138 21759444 -162529218 - AluSx SINE Alu -4 308 1 1116 120 0 25 chr4 21759446 21759646 -162529016 - L1MA8 LINE L1 -4 6287 6093 722 348 32 32 chr4 21759658 21760063 -162528599 + L3 LINE CR1 947 1351 -226 720 330 48 0 chr4 21761805 21762157 -162526505 - L1MC4a LINE L1 -1934 5857 5489 1929 172 44 6 chr4 21762172 21762533 -162526129 - THE1C LTR MaLR 0 375 1 9298 142 14 44 chr4 21762533 21763764 -162524898 - THE1C-int LTR MaLR 0 1580 408 1991 153 0 0 chr4 21763764 21764051 -162524611 + AluSx SINE Alu 18 304 -8 9298 142 14 44 chr4 21764051 21764446 -162524216 - THE1C-int LTR MaLR -1172 408 3 786 179 40 35 chr4 21764448 21764621 -162524041 - THE1C LTR MaLR 0 375 202 21786 30 1 0 chr4 21764621 21768033 -162520629 + L1PA3 LINE L1 2735 6153 -2 955 152 54 11 chr4 21768141 21768325 -162520337 - THE1C LTR MaLR -183 192 1 358 319 106 24 chr4 21768340 21768547 -162520115 - L1MC4a LINE L1 -2330 5461 5238 346 311 61 17 chr4 21768963 21769143 -162519519 - L1MC4a LINE L1 -1553 4576 4389 680 292 39 34 chr4 21769309 21769775 -162518887 - HAL1 LINE L1 -873 1634 1167 342 253 25 19 chr4 21770131 21770293 -162518369 + L1M4 LINE L1 2251 2413 -3733 238 248 44 80 chr4 21770315 21770428 -162518234 - L1MC4a LINE L1 -5692 427 319 327 283 133 17 chr4 21770804 21770924 -162517738 + MIR SINE MIR 35 168 -94 562 267 149 0 chr4 21771053 21771248 -162517414 + MER58A DNA MER1_type 1 224 0 1559 195 59 49 chr4 21771504 21771894 -162516768 - MSTD LTR MaLR -2 394 1 336 343 47 83 chr4 21772178 21772624 -162516038 + L2 LINE L2 2838 3267 -5 331 292 97 26 chr4 21773590 21773703 -162514959 - MIR SINE MIR -117 145 25 1414 91 10 5 chr4 21773703 21773901 -162514761 - AluY SINE Alu -8 303 105 513 0 0 0 chr4 21773968 21774025 -162514637 + (CA)n Simple_repeat Simple_repeat 2 58 0 1319 230 113 57 chr4 21774113 21774626 -162514036 - MLT1F LTR MaLR 0 542 1 433 194 163 0 chr4 21775016 21775114 -162513548 + MIR3 SINE MIR 42 155 -53 1458 106 0 0 chr4 21775245 21775434 -162513228 + AluSg/x SINE Alu 114 302 -8 315 304 0 0 chr4 21775439 21775518 -162513144 - Charlie8 DNA MER1_type -2206 211 133 3255 115 4 10 chr4 21776521 21777024 -162511638 - LTR3b LTR ERVK 0 500 1 757 252 59 27 chr4 21777077 21777299 -162511363 + MIR SINE MIR 32 260 -2 236 275 14 29 chr4 21777945 21778014 -162510648 + L2 LINE L2 3244 3311 -2 640 287 36 15 chr4 21779038 21779233 -162509429 + MIR SINE MIR 2 200 -62 413 353 58 21 chr4 21780025 21780351 -162508311 - L2 LINE L2 -21 3292 2955 588 266 198 16 chr4 21781162 21781410 -162507252 - MLT1J2 LTR MaLR -120 330 38 255 299 78 66 chr4 21781514 21781848 -162506814 + MLT1K LTR MaLR 209 546 -42 369 0 0 0 chr4 21782506 21782547 -162506115 + (TTA)n Simple_repeat Simple_repeat 2 42 0 712 145 17 0 chr4 21782547 21782664 -162505998 - AluJb SINE Alu -192 120 2 737 275 111 30 chr4 21782678 21782884 -162505778 - MLT1J LTR MaLR -54 457 212 590 259 232 24 chr4 21782884 21783220 -162505442 - MLT1I LTR MaLR -3 406 1 737 275 111 30 chr4 21783220 21783347 -162505315 - MLT1J LTR MaLR -299 212 97 3192 238 55 58 chr4 21783363 21784557 -162504105 - L1MCb LINE L1 -4854 1191 1 304 248 34 34 chr4 21784606 21784723 -162503939 - MLT1J LTR MaLR -394 117 1 212 0 36 0 chr4 21785201 21785229 -162503433 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 574 275 101 52 chr4 21785256 21785601 -162503061 + MLT1J LTR MaLR 117 478 -33 1137 306 33 13 chr4 21785855 21786310 -162502352 - LTR16B LTR ERVL 0 464 1 28 29 0 0 chr4 21786778 21786813 -162501849 + AT_rich Low_complexity Low_complexity 1 35 0 39 50 0 0 chr4 21786846 21786906 -162501756 + AT_rich Low_complexity Low_complexity 1 60 0 1772 193 88 18 chr4 21787479 21787518 -162501144 - MSTA LTR MaLR 0 428 393 2085 128 0 0 chr4 21787518 21787843 -162500819 + AluSx SINE Alu 1 325 0 1772 193 88 18 chr4 21787843 21788202 -162500460 - MSTA LTR MaLR -35 393 1 295 275 132 0 chr4 21788327 21788418 -162500244 - MIR SINE MIR -5 257 155 2333 105 3 13 chr4 21788682 21788995 -162499667 + AluSg SINE Alu 1 310 0 434 279 103 7 chr4 21789006 21789142 -162499520 - MIR SINE MIR -102 160 12 328 323 82 0 chr4 21789152 21789310 -162499352 + MIR SINE MIR 77 247 -15 409 199 87 63 chr4 21789826 21789982 -162498680 + MIR SINE MIR 30 190 -62 237 279 64 109 chr4 21790118 21790378 -162498284 - L2 LINE L2 -167 3105 2857 336 24 0 0 chr4 21790378 21790419 -162498243 + (TG)n Simple_repeat Simple_repeat 2 42 0 237 279 64 109 chr4 21790419 21790441 -162498221 - L2 LINE L2 -415 2857 2836 1344 161 31 85 chr4 21790492 21790809 -162497853 - AluSx SINE Alu 0 312 13 295 327 110 36 chr4 21790866 21791202 -162497460 - L2 LINE L2 -683 2631 2271 193 333 109 14 chr4 21791449 21791587 -162497075 + MIR3 SINE MIR 16 166 -42 2506 63 0 0 chr4 21791590 21791890 -162496772 - AluY SINE Alu -11 300 1 615 274 25 19 chr4 21792592 21792749 -162495913 + MIR3 SINE MIR 30 187 -21 248 295 177 34 chr4 21792836 21792970 -162495692 - MIR SINE MIR -62 146 5 188 316 158 14 chr4 21793645 21793784 -162494878 - MIR SINE MIR -5 257 99 424 284 206 15 chr4 21794296 21794500 -162494162 + MIR SINE MIR 20 262 0 456 216 64 39 chr4 21795582 21795737 -162492925 - L1ME2 LINE L1 -11 6323 5998 22 35 0 0 chr4 21796059 21796088 -162492574 + AT_rich Low_complexity Low_complexity 1 29 0 577 310 73 52 chr4 21796102 21796711 -162491951 + L1M4c LINE L1 1007 3497 -2885 259 369 15 0 chr4 21796720 21796850 -162491812 + LTR16A LTR ERVL 18 149 -301 422 277 78 6 chr4 21796973 21797139 -162491523 + LTR16A LTR ERVL 261 438 -12 579 241 62 20 chr4 21797263 21797458 -162491204 - L1ME1 LINE L1 -5 6161 5959 351 284 31 86 chr4 21797482 21797644 -162491018 + MIR3 SINE MIR 11 163 -45 252 345 14 0 chr4 21797752 21797897 -162490765 - L1MEc LINE L1 -6188 208 62 1493 151 84 57 chr4 21798080 21798379 -162490283 + AluJo SINE Alu 6 312 0 359 328 21 42 chr4 21798436 21798628 -162490034 + L1M4c LINE L1 4516 4703 -1679 833 262 31 0 chr4 21798654 21798845 -162489817 - MIR SINE MIR -19 243 47 214 349 93 0 chr4 21799397 21799483 -162489179 - L3 LINE CR1 -932 645 552 503 249 120 60 chr4 21799634 21799851 -162488811 + MIR SINE MIR 33 262 0 700 168 14 7 chr4 21800010 21800153 -162488509 - L1MB4 LINE L1 -1 6179 6036 1080 261 45 45 chr4 21801743 21802345 -162486317 - L1MEd LINE L1 -4919 1200 599 436 325 102 41 chr4 21802557 21802871 -162485791 - L1MEd LINE L1 -5771 348 16 1073 152 0 0 chr4 21803717 21803882 -162484780 + THE1C LTR MaLR 1 165 -210 1549 70 0 14 chr4 21803976 21804189 -162484473 + THE1C LTR MaLR 166 375 0 312 247 11 0 chr4 21804400 21804493 -162484169 + MLT2D LTR ERVL 1 94 -320 34 24 0 0 chr4 21804495 21804536 -162484126 + AT_rich Low_complexity Low_complexity 1 41 0 1426 190 10 33 chr4 21804538 21804843 -162483819 + MLT2D LTR ERVL 109 406 -8 358 299 112 74 chr4 21804890 21805255 -162483407 + L2 LINE L2 2002 2380 -934 478 226 161 8 chr4 21805281 21805405 -162483257 + MIR SINE MIR 90 232 -30 382 235 214 0 chr4 21805464 21805562 -162483100 + L2 LINE L2 3191 3309 -4 461 312 78 34 chr4 21805577 21805782 -162482880 + L2 LINE L2 2435 2648 -666 193 323 111 0 chr4 21807745 21807844 -162480818 + MIR SINE MIR 37 146 -62 1401 164 95 29 chr4 21807862 21808209 -162480453 + L1MA7 LINE L1 5919 6288 -3 2070 121 13 16 chr4 21809046 21809359 -162479303 + AluSx SINE Alu 1 312 0 2137 127 3 3 chr4 21809441 21809771 -162478891 - THE1B LTR MaLR -33 331 2 5895 109 21 1 chr4 21809771 21810630 -162478032 - THE1B-int LTR MaLR 0 1580 705 2417 110 5 32 chr4 21810651 21811024 -162477638 - THE1B LTR MaLR -1 363 1 22 56 0 0 chr4 21811065 21811101 -162477561 + AT_rich Low_complexity Low_complexity 1 36 0 360 287 42 28 chr4 21811347 21811490 -162477172 + MER5A DNA MER1_type 21 165 -24 180 0 0 0 chr4 21811589 21811609 -162477053 + (CA)n Simple_repeat Simple_repeat 1 20 0 1774 156 20 7 chr4 21811833 21812135 -162476527 - AluJb SINE Alu -2 310 5 180 234 16 47 chr4 21812689 21812753 -162475909 + L2 LINE L2 3179 3240 -73 224 339 106 42 chr4 21812853 21813540 -162475122 + L2 LINE L2 976 1706 -1608 813 128 35 6 chr4 21813801 21813973 -162474689 + Charlie5 DNA MER1_type 2426 2602 -10 1270 196 113 38 chr4 21814824 21815268 -162473394 - Charlie1 DNA MER1_type 0 2761 2285 311 239 68 11 chr4 21815264 21815352 -162473310 - Charlie1 DNA MER1_type -2611 150 58 * 227 215 271 19 chr4 21815571 21815678 -162472984 + MLT1I LTR MaLR 251 384 -25 255 289 0 12 chr4 21815875 21815958 -162472704 + CT-rich Low_complexity Low_complexity 2 83 0 1812 146 10 10 chr4 21816303 21816597 -162472065 - AluJo SINE Alu -13 299 6 228 328 120 88 chr4 21816610 21816951 -162471711 + L2 LINE L2 2920 3271 -1 1110 218 74 11 chr4 21817793 21818077 -162470585 + MER58B DNA MER1_type 40 341 0 292 277 128 0 chr4 21818642 21818736 -162469926 + L2 LINE L2 3150 3255 -17 1012 194 72 14 chr4 21818875 21819097 -162469565 + MER46A DNA MER2_type 1 235 -1 1057 211 0 0 chr4 21820708 21820916 -162467746 + MER3 DNA MER1_type 2 209 0 365 274 203 39 chr4 21820936 21821089 -162467573 + MER5A DNA MER1_type 12 189 0 1205 264 91 31 chr4 21821123 21821506 -162467156 - MLT1I LTR MaLR -3 406 1 308 280 173 13 chr4 21821557 21821707 -162466955 + L2 LINE L2 2591 2764 -550 400 281 42 30 chr4 21821755 21821922 -162466740 + MIR SINE MIR 68 236 -26 288 272 123 26 chr4 21822014 21822128 -162466534 + L2 LINE L2 3133 3257 -15 247 379 45 11 chr4 21822202 21822379 -162466283 + L2 LINE L2 2875 3057 -215 206 183 154 101 chr4 21822576 21822745 -162465917 - L2 LINE L2 -449 2865 2688 272 276 192 13 chr4 21823036 21823192 -162465470 - MLT1J LTR MaLR -49 462 279 384 294 88 7 chr4 21823303 21823439 -162465223 - MLT1J LTR MaLR -309 202 56 297 299 0 0 chr4 21824084 21824151 -162464511 - Charlie8 DNA MER1_type 0 2417 2351 242 209 0 45 chr4 21824820 21824887 -162463775 + MLT1K LTR MaLR 506 569 -19 2120 125 6 10 chr4 21824977 21825288 -162463374 + AluSg SINE Alu 1 310 0 226 369 48 0 chr4 21826797 21826900 -162461762 - L3 LINE CR1 -3 1574 1467 350 356 85 54 chr4 21827309 21828194 -162460468 - L2 LINE L2 -463 2851 1940 405 226 118 80 chr4 21829079 21829366 -162459296 + L1ME3A LINE L1 5873 6170 0 753 183 0 0 chr4 21829375 21829501 -162459161 + FLAM_C SINE Alu 1 126 -17 240 82 49 16 chr4 21829800 21829861 -162458801 + (TTATA)n Simple_repeat Simple_repeat 5 67 0 1021 194 48 16 chr4 21829865 21830117 -162458545 + L1MB7 LINE L1 5906 6165 -19 1060 67 0 0 chr4 21830444 21830579 -162458083 - L1MA4A LINE L1 -532 5771 5637 * 1257 146 28 24 chr4 21830563 21830810 -162457852 + L1MA4A LINE L1 5764 6011 -292 1995 182 75 15 chr4 21830810 21831211 -162457451 - MSTB LTR MaLR 0 426 2 4639 181 29 3 chr4 21831217 21832068 -162456594 - MSTB-int LTR MaLR -5 1646 774 1853 141 73 102 chr4 21832068 21832509 -162456153 + MSTA LTR MaLR 1 428 0 3639 178 68 1 chr4 21832509 21833190 -162455472 + MSTA-int LTR MaLR 1 726 -925 367 203 40 0 chr4 21833190 21833264 -162455398 - MSTB LTR MaLR -349 77 1 1526 142 47 0 chr4 21833267 21833542 -162455120 + L1MA4A LINE L1 6012 6299 -4 435 292 119 37 chr4 21833720 21834088 -162454574 + L1MDa LINE L1 1715 2083 -839 22 0 0 0 chr4 21834211 21834233 -162454429 + AT_rich Low_complexity Low_complexity 1 22 0 619 272 97 58 chr4 21834518 21835320 -162453342 + L1MDa LINE L1 2493 3323 -3217 25611 137 22 14 chr4 21835377 21841689 -162446973 - L1PA8A LINE L1 -3 6443 1 1731 200 0 0 chr4 21841692 21841997 -162446665 - AluJb SINE Alu -7 305 1 1113 280 85 78 chr4 21842050 21843516 -162445146 + L1MDa LINE L1 3468 4922 -1636 845 240 162 3 chr4 21843516 21843812 -162444850 + MER2 DNA MER2_type 1 343 -1 1113 280 85 78 chr4 21843812 21844011 -162444651 + L1MDa LINE L1 4922 5118 -1440 2635 42 7 0 chr4 21844011 21844320 -162444342 - AluY SINE Alu 0 311 1 1113 280 85 78 chr4 21844320 21844607 -162444055 + L1MDa LINE L1 5118 5401 -1157 3796 74 6 8 chr4 21844607 21845118 -162443544 + L1PA10 LINE L1 5657 6166 -2 1113 280 85 78 chr4 21845118 21845187 -162443475 + L1MDa LINE L1 5401 5468 -1090 2084 121 0 10 chr4 21845187 21845527 -162443135 + AluSq SINE Alu 1 313 0 1113 280 85 78 chr4 21845527 21846002 -162442660 + L1MDa LINE L1 5468 5981 -577 467 269 81 49 chr4 21846038 21846261 -162442401 - LTR16A1 LTR ERVL -12 445 216 9472 165 36 44 chr4 21846545 21848892 -162439770 - L1M2 LINE L1 -729 5471 3163 700 54 0 0 chr4 21848897 21848989 -162439673 - L1MA1 LINE L1 0 6302 6211 10207 184 19 5 chr4 21848991 21851065 -162437597 - L1 LINE L1 -790 6775 4672 11476 186 71 10 chr4 21851073 21853248 -162435414 - L1 LINE L1 -5241 2324 16 2862 221 30 9 chr4 21853260 21854039 -162434623 - L1M2 LINE L1 -2861 3173 2379 1036 219 33 111 chr4 21854039 21854400 -162434262 + MER2 DNA MER2_type 2 334 -11 1189 251 69 28 chr4 21854402 21855213 -162433449 - L1M2 LINE L1 -3643 2391 1537 * 2604 262 62 13 chr4 21855207 21856476 -162432186 - L1M2 LINE L1 -4385 1650 331 1632 298 20 7 chr4 21856487 21856927 -162431735 - L1M2 LINE L1 -5506 449 4 279 302 11 37 chr4 21857319 21857427 -162431235 - MIR SINE MIR -73 135 54 2886 193 22 0 chr4 21858702 21859281 -162429381 - L1MC3 LINE L1 0 7785 7194 231 352 23 0 chr4 21859288 21859376 -162429286 - MLT1F1 LTR MaLR -443 124 35 378 169 39 85 chr4 21859376 21859475 -162429187 - L1MC3 LINE L1 -688 7166 7064 198 0 0 0 chr4 21859475 21859497 -162429165 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 2138 116 0 0 chr4 21859497 21859782 -162428880 - AluSg SINE Alu -25 285 1 378 169 39 85 chr4 21859782 21859811 -162428851 - L1MC3 LINE L1 -788 7066 7043 1157 217 59 28 chr4 21859811 21860162 -162428500 - MSTD LTR MaLR 0 396 1 7018 203 67 26 chr4 21860171 21861440 -162427222 - L1MC3 LINE L1 -750 5465 5646 2209 110 67 14 chr4 21861440 21861786 -162426876 + THE1B LTR MaLR 1 364 0 7018 203 67 26 chr4 21861786 21862626 -162426036 - L1MC3 LINE L1 -568 5647 4843 1416 251 7 2 chr4 21862632 21863050 -162425612 - L1MC3 LINE L1 -1329 4886 4467 * 2893 257 29 23 chr4 21863045 21864250 -162424412 - L1MC3 LINE L1 -3010 3205 2040 1294 150 5 0 chr4 21864266 21864466 -162424196 + L1PA16 LINE L1 2 202 -6647 11776 165 31 42 chr4 21864466 21866929 -162421733 + L1PA16 LINE L1 734 3157 -3692 468 51 0 0 chr4 21866929 21866988 -162421674 + (CA)n Simple_repeat Simple_repeat 2 60 0 305 130 0 0 chr4 21866989 21867035 -162421627 + L1 LINE L1 4302 4347 -2502 227 232 0 53 chr4 21867105 21867200 -162421462 - L1MC4 LINE L1 -1339 6703 6614 638 211 0 13 chr4 21867203 21867359 -162421303 + (TATATG)n Simple_repeat Simple_repeat 3 156 0 304 267 0 0 chr4 21867363 21867453 -162421209 + L1MC4 LINE L1 6614 6703 -1339 396 200 0 0 chr4 21867453 21867538 -162421124 + (TA)n Simple_repeat Simple_repeat 2 86 0 242 278 0 0 chr4 21867539 21867629 -162421033 + L1MC4 LINE L1 6614 6703 -1339 369 232 0 0 chr4 21867629 21867724 -162420938 + (TA)n Simple_repeat Simple_repeat 2 96 0 312 228 0 22 chr4 21867729 21867821 -162420841 - L1MC4 LINE L1 -1339 6703 6614 360 210 0 0 chr4 21867822 21867903 -162420759 + (TA)n Simple_repeat Simple_repeat 2 82 0 257 228 22 43 chr4 21867903 21867995 -162420667 + L1MC4 LINE L1 6614 6703 -1339 8808 192 20 99 chr4 21868026 21869063 -162419599 + L1PA16 LINE L1 3151 4269 -2600 180 0 0 0 chr4 21869063 21869083 -162419579 + (CAA)n Simple_repeat Simple_repeat 2 21 0 8808 192 20 99 chr4 21869083 21871944 -162416718 + L1PA16 LINE L1 4269 6715 -154 1235 217 54 13 chr4 21871954 21872330 -162416332 - L1MDb LINE L1 -4992 1437 1046 186 289 246 0 chr4 21872369 21872483 -162416179 - MIR3 SINE MIR -31 177 36 1589 197 42 36 chr4 21872643 21872981 -162415681 + MLT1B LTR MaLR 28 370 -20 1862 175 55 40 chr4 21872981 21873403 -162415259 + MSTC LTR MaLR 1 428 0 1589 197 42 36 chr4 21873403 21873425 -162415237 + MLT1B LTR MaLR 370 390 0 917 219 10 26 chr4 21874269 21874461 -162414201 - MER5A DNA MER1_type 0 189 1 228 326 22 11 chr4 21874498 21874587 -162414075 + CT-rich Low_complexity Low_complexity 5 94 0 192 40 0 0 chr4 21874588 21874613 -162414049 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 4747 48 7 2 chr4 21874621 21875208 -162413454 - L1PA7 LINE L1 -17 6137 5548 489 318 39 13 chr4 21876125 21876279 -162412383 + MIR3 SINE MIR 42 199 -9 420 270 17 9 chr4 21876799 21876914 -162411748 - MIR SINE MIR -1 261 146 368 249 76 104 chr4 21876925 21877214 -162411448 - L2 LINE L2 -12 3301 3021 278 323 140 27 chr4 21877995 21878181 -162410481 + LTR67 LTR ERVL 98 304 -253 787 193 0 0 chr4 21878394 21878539 -162410123 + AluJb SINE Alu 162 306 -6 209 328 0 0 chr4 21879250 21879317 -162409345 + CT-rich Low_complexity Low_complexity 2 68 0 21 36 0 0 chr4 21879619 21879647 -162409015 + AT_rich Low_complexity Low_complexity 1 28 0 268 294 110 48 chr4 21880279 21880425 -162408237 + MIR3 SINE MIR 3 157 -51 25 31 0 0 chr4 21880611 21880643 -162408019 + AT_rich Low_complexity Low_complexity 1 32 0 1129 263 57 15 chr4 21880821 21881372 -162407290 + L1ME3A LINE L1 5559 6160 -2 1214 299 71 43 chr4 21881690 21882348 -162406314 + L1MEc LINE L1 39 715 -5681 1118 219 29 13 chr4 21882358 21882802 -162405860 + MLT1D LTR MaLR 1 505 0 2784 241 88 26 chr4 21882806 21883901 -162404761 + L1MEc LINE L1 724 1885 -4511 233 210 0 74 chr4 21884496 21884577 -162404085 + L1ME1 LINE L1 5927 6001 -165 664 196 12 37 chr4 21884597 21884760 -162403902 + L1MA10 LINE L1 6169 6327 -7 1482 173 0 64 chr4 21885211 21885536 -162403126 - AluJb SINE Alu 0 311 6 292 297 80 85 chr4 21885720 21885932 -162402730 + MIR SINE MIR 28 238 -24 267 241 159 0 chr4 21886761 21886871 -162401791 + MIR SINE MIR 4 132 -105 535 209 27 91 chr4 21886872 21887059 -162401603 - MLT1D LTR MaLR -310 195 21 352 305 205 35 chr4 21888426 21888685 -162399977 + L2 LINE L2 2472 2774 -540 788 266 54 48 chr4 21888722 21889057 -162399605 - MLT1I LTR MaLR -72 337 1 250 139 0 0 chr4 21889155 21889198 -162399464 + L2 LINE L2 2933 2975 -339 1338 206 4 0 chr4 21889217 21889474 -162399188 + L1MB7 LINE L1 5884 6141 -43 1978 107 76 3 chr4 21889837 21890128 -162398534 - AluSq SINE Alu -1 312 1 368 366 101 21 chr4 21890216 21890681 -162397981 + L2 LINE L2 2807 3308 -5 447 289 81 55 chr4 21890699 21890934 -162397728 + MIR SINE MIR 18 258 -4 370 290 71 19 chr4 21891599 21891779 -162396883 + MIR SINE MIR 18 198 -57 306 252 148 58 chr4 21891893 21892020 -162396642 - MIR SINE MIR -70 192 47 2574 94 14 3 chr4 21892020 21892380 -162396282 + THE1B LTR MaLR 1 364 0 306 252 148 58 chr4 21892380 21892407 -162396255 - MIR SINE MIR -215 47 24 249 237 134 31 chr4 21893309 21893406 -162395256 + MIR SINE MIR 48 154 -108 * 716 226 161 5 chr4 21893399 21893585 -162395077 - MIR SINE MIR 0 262 48 207 351 135 0 chr4 21894257 21894442 -162394220 + MIR SINE MIR 37 246 -16 372 301 98 54 chr4 21894451 21894654 -162394008 + LTR67 LTR ERVL 5 216 -341 1255 111 0 0 chr4 21895103 21895274 -162393388 - AluSc SINE Alu -11 298 128 326 291 108 25 chr4 21895417 21895575 -162393087 - MIR SINE MIR -89 173 3 296 281 219 6 chr4 21896517 21896677 -162391985 + MIR SINE MIR 43 236 -26 750 282 23 14 chr4 21896709 21896925 -162391737 - MIR SINE MIR -32 230 13 526 263 15 0 chr4 21896989 21897122 -162391540 - MIR3 SINE MIR -38 170 36 2336 91 0 25 chr4 21897372 21897690 -162390972 - AluSg SINE Alu 0 310 1 187 333 15 0 chr4 21898308 21898374 -162390288 - L3 LINE CR1 -83 1494 1428 246 318 136 0 chr4 21898408 21898540 -162390122 - MIR SINE MIR -13 249 100 686 256 143 42 chr4 21898852 21898920 -162389742 + MIR SINE MIR 1 61 -201 2572 189 35 21 chr4 21898920 21899387 -162389275 + MLT2B1 LTR ERVL 1 460 -60 252 0 0 0 chr4 21899387 21899415 -162389247 + (TC)n Simple_repeat Simple_repeat 2 29 0 225 0 0 0 chr4 21899414 21899439 -162389223 + (TA)n Simple_repeat Simple_repeat 1 25 0 * 2572 189 35 21 chr4 21899415 21899443 -162389219 + MLT2B1 LTR ERVL 460 486 -34 180 0 0 0 chr4 21899443 21899463 -162389199 + (TC)n Simple_repeat Simple_repeat 2 21 0 * 207 114 0 0 chr4 21899462 21899497 -162389165 + (TA)n Simple_repeat Simple_repeat 1 35 0 2572 189 35 21 chr4 21899463 21899537 -162389125 + MLT2B1 LTR ERVL 486 520 0 686 256 143 42 chr4 21899537 21899706 -162388956 + MIR SINE MIR 61 262 0 570 337 28 31 chr4 21900394 21900649 -162388013 + MIR SINE MIR 7 260 -2 1015 62 0 14 chr4 21900813 21900959 -162387703 + (TCCC)n Simple_repeat Simple_repeat 3 146 0 642 238 5 16 chr4 21901789 21901978 -162386684 - MER53 DNA DNA -2 187 1 186 242 65 16 chr4 21902049 21902111 -162386551 + L2 LINE L2 3200 3264 -8 3485 163 38 10 chr4 21902799 21903481 -162385181 - L1MA8 LINE L1 -22 6269 5569 249 269 135 0 chr4 21903689 21903793 -162384869 - MLT1J LTR MaLR -74 437 320 273 282 0 105 chr4 21903823 21903947 -162384715 + L2 LINE L2 3201 3311 -2 199 286 16 16 chr4 21904504 21904567 -162384095 + L2 LINE L2 3209 3271 -1 1923 143 135 5 chr4 21904970 21905349 -162383313 + MSTA LTR MaLR 1 428 0 728 313 17 4 chr4 21905703 21905936 -162382726 + MIR SINE MIR 13 248 -14 210 229 169 0 chr4 21906190 21906273 -162382389 + L2 LINE L2 3217 3313 0 496 274 185 2 chr4 21907423 21907623 -162381039 - MIR SINE MIR -14 248 11 23 0 0 0 chr4 21908004 21908027 -162380635 + AT_rich Low_complexity Low_complexity 1 23 0 190 337 20 20 chr4 21908652 21908753 -162379909 + L3 LINE CR1 1187 1287 -290 380 314 176 0 chr4 21908849 21909002 -162379660 + L3 LINE CR1 1295 1474 -103 4814 184 53 11 chr4 21910784 21911260 -162377402 - L1MA9 LINE L1 0 6312 5857 198 0 0 0 chr4 21911260 21911282 -162377380 + (TG)n Simple_repeat Simple_repeat 2 23 0 4814 184 53 11 chr4 21911282 21912815 -162375847 - L1MA9 LINE L1 -455 5857 4216 13174 32 1 0 chr4 21912816 21914392 -162374270 - L1PA3 LINE L1 -1269 4877 3300 7534 33 5 0 chr4 21914395 21915668 -162372994 + L1PA3 LINE L1 4879 6155 0 4318 183 64 43 chr4 21915672 21916904 -162371758 - L1MA9 LINE L1 -1926 4220 2963 242 253 98 16 chr4 21916896 21917090 -162371572 - L1M4c LINE L1 -4140 2072 1863 * 345 316 24 42 chr4 21917156 21917324 -162371338 - L1M4c LINE L1 -4161 2050 1532 447 137 0 0 chr4 21917324 21917397 -162371265 - AluS SINE Alu -239 73 1 2939 242 101 19 chr4 21917397 21918011 -162370651 - L1M4c LINE L1 -4567 1574 853 2551 138 33 2 chr4 21918011 21918430 -162370232 + MER57B LTR ERV1 3 434 0 2939 242 101 19 chr4 21918430 21918764 -162369898 - L1M4c LINE L1 -5288 853 548 1549 261 61 0 chr4 21918779 21919174 -162369488 - L1M4c LINE L1 -5680 461 43 225 0 0 0 chr4 21919347 21919372 -162369290 + (T)n Simple_repeat Simple_repeat 1 25 0 248 300 50 33 chr4 21921721 21921841 -162366821 - L2 LINE L2 -217 3055 2934 270 373 113 10 chr4 21922215 21922419 -162366243 + L2 LINE L2 2184 2408 -906 353 296 7 0 chr4 21922690 21922825 -162365837 + MER103 DNA DNA 21 156 -10 28 0 0 0 chr4 21923617 21923645 -162365017 + AT_rich Low_complexity Low_complexity 1 28 0 23615 131 25 78 chr4 21923744 21928781 -162359881 + L1PA8 LINE L1 12 4781 -1365 5937 78 76 3 chr4 21929005 21930314 -162358348 + L1PA8 LINE L1 4798 6167 -5 38700 55 2 7 chr4 21930976 21936936 -162351726 + L1PA4 LINE L1 221 6154 -1 192 217 0 0 chr4 21937116 21937162 -162351500 + CT-rich Low_complexity Low_complexity 3 48 0 225 152 0 0 chr4 21937746 21937792 -162350870 + LTR66 LTR ERVL 394 439 -171 785 196 14 7 chr4 21938013 21938156 -162350506 + AluSc SINE Alu 137 280 -29 234 0 0 0 chr4 21938562 21938588 -162350074 + (CA)n Simple_repeat Simple_repeat 2 27 0 2177 118 0 0 chr4 21938618 21938914 -162349748 + AluSc SINE Alu 1 296 -13 194 208 19 0 chr4 21938975 21939028 -162349634 + (TA)n Simple_repeat Simple_repeat 2 55 0 429 20 0 0 chr4 21939296 21939346 -162349316 + (TG)n Simple_repeat Simple_repeat 1 50 0 201 328 15 15 chr4 21940146 21940213 -162348449 - MIR SINE MIR -105 103 37 2144 62 0 0 chr4 21940355 21940611 -162348051 + AluSc SINE Alu 39 294 -15 190 351 0 13 chr4 21940625 21940702 -162347960 - MIR SINE MIR -65 143 68 218 373 45 8 chr4 21941671 21941805 -162346857 - MIR SINE MIR -65 197 59 33 43 0 0 chr4 21941876 21941923 -162346739 + AT_rich Low_complexity Low_complexity 1 47 0 1757 167 6 35 chr4 21941963 21942274 -162346388 - AluSx SINE Alu -10 302 1 359 356 17 11 chr4 21942944 21943121 -162345541 - HERVL LTR ERVL -1932 3722 3545 497 336 93 28 chr4 21943230 21943810 -162344852 - HERVL LTR ERVL -2988 2776 2159 2348 103 3 0 chr4 21944147 21944459 -162344203 + AluSp SINE Alu 1 313 0 299 345 31 5 chr4 21944513 21944704 -162343958 - HERVL LTR ERVL -4070 926 731 1182 33 0 0 chr4 21944849 21945001 -162343661 - L1PA4 LINE L1 -668 5487 5336 5348 41 1 0 chr4 21945001 21945652 -162343010 + L1PA4 LINE L1 5503 6155 0 230 312 37 28 chr4 21945763 21945872 -162342790 - MER61D LTR ERV1 -42 459 350 * 258 151 55 41 chr4 21945841 21945914 -162342748 - LTR25 LTR ERV1 -128 666 593 748 268 0 6 chr4 21945987 21946166 -162342496 - LTR28 LTR ERV1 -842 178 1 356 287 91 7 chr4 21946199 21946342 -162342320 + MIR SINE MIR 12 166 -96 * 371 273 83 16 chr4 21946336 21946457 -162342205 + L2 LINE L2 3144 3272 0 201 296 0 42 chr4 21946614 21946685 -162341977 + L2 LINE L2 3020 3087 -185 312 319 147 12 chr4 21947612 21947863 -162340799 + MLT1J2 LTR MaLR 45 329 -121 190 341 35 24 chr4 21948087 21948172 -162340490 + L2 LINE L2 3182 3267 -5 876 278 75 84 chr4 21948714 21949312 -162339350 + MLT1E LTR MaLR 1 593 0 402 313 28 34 chr4 21950482 21950661 -162338001 + MIR SINE MIR 3 180 -82 508 227 13 84 chr4 21950698 21950852 -162337810 + MIR SINE MIR 13 155 -107 180 0 0 0 chr4 21950852 21950872 -162337790 + (TAA)n Simple_repeat Simple_repeat 2 21 0 224 332 117 37 chr4 21950894 21951108 -162337554 - L2 LINE L2 0 3313 3083 997 289 28 35 chr4 21951320 21951618 -162337044 - L2 LINE L2 -269 3044 2750 2403 65 0 3 chr4 21951618 21951908 -162336754 - AluY SINE Alu -13 298 10 997 289 28 35 chr4 21951908 21952022 -162336640 - L2 LINE L2 -563 2750 2637 495 247 43 52 chr4 21952055 21952139 -162336523 + MLT1J2 LTR MaLR 67 150 -300 1397 202 49 64 chr4 21952139 21952589 -162336073 - LTR47B LTR ERVL 0 443 1 495 247 43 52 chr4 21952589 21952809 -162335853 + MLT1J2 LTR MaLR 150 450 0 2377 295 110 15 chr4 21952809 21953755 -162334907 - L2 LINE L2 -678 2636 1601 600 85 0 12 chr4 21953823 21953905 -162334757 - 7SLRNA srpRNA srpRNA -10 310 230 189 132 0 0 chr4 21954064 21954102 -162334560 + (CA)n Simple_repeat Simple_repeat 1 38 0 234 215 42 125 chr4 21954300 21954444 -162334218 - L1ME2 LINE L1 -9 6155 6024 296 237 84 5 chr4 21954447 21954577 -162334085 - L1MB7 LINE L1 -226 5938 5803 270 0 0 0 chr4 21955136 21955166 -162333496 + (TG)n Simple_repeat Simple_repeat 2 31 0 323 288 188 0 chr4 21955282 21955452 -162333210 - MIR SINE MIR -3 259 58 191 353 68 45 chr4 21955481 21955702 -162332960 - L2 LINE L2 -230 3042 2817 378 310 18 58 chr4 21955853 21956024 -162332638 + MIR SINE MIR 47 210 -52 203 344 0 0 chr4 21957414 21957475 -162331187 + MIR SINE MIR 199 259 -3 1860 126 95 31 chr4 21957737 21958086 -162330576 - THE1C LTR MaLR 0 375 5 1242 103 49 5 chr4 21958169 21958372 -162330290 + L1PB1 LINE L1 5940 6151 0 23 0 0 0 chr4 21958588 21958611 -162330051 + AT_rich Low_complexity Low_complexity 1 23 0 371 350 56 6 chr4 21958686 21958846 -162329816 + MIR SINE MIR 20 187 -75 278 303 78 35 chr4 21958992 21959134 -162329528 + MIR SINE MIR 115 262 0 249 355 50 16 chr4 21959158 21959279 -162329383 - L2 LINE L2 -5 3267 3143 202 309 54 54 chr4 21959409 21959577 -162329085 + L2 LINE L2 2892 3059 -213 317 300 0 0 chr4 21959655 21959745 -162328917 + MLT1K LTR MaLR 157 246 -342 193 107 0 0 chr4 21960121 21960149 -162328513 + L2 LINE L2 3228 3255 -17 214 308 68 15 chr4 21960277 21960388 -162328274 - MIR SINE MIR -62 146 49 189 353 131 13 chr4 21961528 21961681 -162326981 - MIR SINE MIR -34 228 58 792 286 103 11 chr4 21961830 21962197 -162326465 + MLT1J2 LTR MaLR 50 450 0 26 30 0 0 chr4 21962206 21962239 -162326423 + AT_rich Low_complexity Low_complexity 1 33 0 767 49 82 19 chr4 21962324 21962459 -162326203 + L1PA8A LINE L1 5594 5726 -405 198 291 91 36 chr4 21963149 21963259 -162325403 + L2 LINE L2 3193 3308 -5 303 122 0 0 chr4 21963536 21963585 -162325077 + (CA)n Simple_repeat Simple_repeat 1 49 0 243 0 0 0 chr4 21963688 21963715 -162324947 + (TG)n Simple_repeat Simple_repeat 1 27 0 189 0 0 0 chr4 21963714 21963735 -162324927 + (GA)n Simple_repeat Simple_repeat 1 21 0 * 200 204 74 0 chr4 21964822 21964876 -162323786 - L2 LINE L2 -1 3312 3255 355 375 27 0 chr4 21964882 21964994 -162323668 + L2 LINE L2 2991 3105 -167 394 318 31 57 chr4 21966851 21967043 -162321619 - MIR SINE MIR -56 206 20 301 358 60 33 chr4 21967790 21968089 -162320573 - MARNA DNA Mariner -155 431 125 2184 102 0 7 chr4 21968127 21968420 -162320242 + AluSx SINE Alu 1 291 -21 21 0 0 0 chr4 21968433 21968454 -162320208 + AT_rich Low_complexity Low_complexity 1 21 0 351 0 0 0 chr4 21968468 21968507 -162320155 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 567 273 0 0 chr4 21968686 21968814 -162319848 + MIR SINE MIR 50 177 -85 359 257 66 40 chr4 21968835 21968987 -162319675 - L2 LINE L2 0 3313 3158 1129 266 41 25 chr4 21969032 21969352 -162319310 - LTR40a LTR ERVL -194 325 1 490 239 22 30 chr4 21969354 21969488 -162319174 + MER5A DNA MER1_type 57 189 0 236 98 0 24 chr4 21970733 21970774 -162317888 + (GA)n Simple_repeat Simple_repeat 1 40 0 304 378 13 19 chr4 21972119 21972275 -162316387 - MIR SINE MIR -41 221 67 346 310 128 12 chr4 21973458 21973881 -162314781 + HAL1 LINE L1 1109 1580 -927 1027 229 16 29 chr4 21973947 21974192 -162314470 + AluJo SINE Alu 67 308 -4 270 260 135 30 chr4 21974342 21974838 -162313824 + L1ME LINE L1 2861 3408 -2738 29 0 0 0 chr4 21975002 21975031 -162313631 + AT_rich Low_complexity Low_complexity 1 29 0 233 272 88 16 chr4 21975073 21975198 -162313464 + L1ME LINE L1 3717 3850 -2296 1674 117 12 4 chr4 21975251 21975491 -162313171 + AluSq SINE Alu 16 257 -56 250 45 45 0 chr4 21975496 21975540 -162313122 + (CAAA)n Simple_repeat Simple_repeat 4 49 0 508 238 50 0 chr4 21975651 21975752 -162312910 - MER81 DNA DNA 0 114 9 269 263 57 67 chr4 21976247 21976514 -162312148 + L1ME LINE L1 4577 4836 -1310 304 304 40 94 chr4 21976607 21976979 -162311683 + L1ME LINE L1 4984 5335 -811 382 344 75 24 chr4 21977009 21977425 -162311237 + L1ME LINE L1 5374 5810 -360 2876 210 45 22 chr4 21977453 21977743 -162310919 - MER82 DNA MER2_type 0 653 371 5729 41 26 4 chr4 21977743 21978470 -162310192 - L1PA4 LINE L1 0 6155 5413 2876 210 45 22 chr4 21978470 21978816 -162309846 - MER82 DNA MER2_type -282 371 2 263 143 0 36 chr4 21978817 21978873 -162309789 + (TATATG)n Simple_repeat Simple_repeat 1 54 0 23 0 0 0 chr4 21979181 21979204 -162309458 + AT_rich Low_complexity Low_complexity 1 23 0 1910 160 7 0 chr4 21979319 21979613 -162309049 - AluSx SINE Alu -11 301 6 590 162 73 7 chr4 21979762 21979898 -162308764 + L1MC3 LINE L1 7610 7754 -31 288 305 217 18 chr4 21980076 21980302 -162308360 + L3 LINE CR1 1232 1502 -75 296 319 7 58 chr4 21980429 21980567 -162308095 - L2 LINE L2 0 3313 3183 187 258 72 103 chr4 21981169 21981266 -162307396 - MIR SINE MIR -141 121 28 277 364 7 49 chr4 21981326 21981469 -162307193 - L2 LINE L2 0 3272 3136 1476 209 0 0 chr4 21981527 21981780 -162306882 + AluJo SINE Alu 22 274 -38 960 266 70 3 chr4 21981988 21982315 -162306347 - L1M4 LINE L1 -1128 5018 4670 1050 132 24 0 chr4 21982339 21982506 -162306156 - THE1C LTR MaLR -202 173 3 8129 116 48 15 chr4 21982512 21983743 -162304919 - THE1C-int LTR MaLR -11 1569 299 1769 226 39 20 chr4 21983740 21984231 -162304431 + L1M4 LINE L1 4550 5049 -1097 * 22 0 0 0 chr4 21984383 21984405 -162304257 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr4 21984501 21984521 -162304141 + (TAAAAA)n Simple_repeat Simple_repeat 2 21 0 225 0 0 0 chr4 21986081 21986106 -162302556 + (T)n Simple_repeat Simple_repeat 1 25 0 24 0 0 0 chr4 21986207 21986231 -162302431 + AT_rich Low_complexity Low_complexity 1 24 0 361 341 34 23 chr4 21986392 21986568 -162302094 + MIR SINE MIR 50 227 -35 22 35 0 0 chr4 21986590 21986619 -162302043 + AT_rich Low_complexity Low_complexity 1 29 0 203 255 39 0 chr4 21987188 21987239 -162301423 - MIR SINE MIR -54 208 156 226 268 18 0 chr4 21987614 21987670 -162300992 - L2 LINE L2 0 3313 3257 6095 95 36 2 chr4 21987713 21988168 -162300494 - L1PA14 LINE L1 -3 6158 5720 2527 123 0 3 chr4 21988168 21988533 -162300129 - THE1B LTR MaLR 0 364 1 6095 95 36 2 chr4 21988533 21990043 -162298619 - L1PA14 LINE L1 -441 5720 4157 8110 154 18 29 chr4 21990043 21991487 -162297175 + L1PA12 LINE L1 1826 3241 -4343 5901 25 33 1 chr4 21991487 21992067 -162296595 + L1PA4 LINE L1 5411 6020 -135 189 0 0 0 chr4 21992067 21992088 -162296574 + (AGGGGG)n Simple_repeat Simple_repeat 2 22 0 5901 25 33 1 chr4 21992088 21992226 -162296436 + L1PA4 LINE L1 6020 6152 -3 8110 154 18 29 chr4 21992226 21992564 -162296098 + L1PA12 LINE L1 3241 3581 -4003 801 132 85 58 chr4 21992564 21992753 -162295909 + MER3 DNA MER1_type 10 203 -6 21 57 0 0 chr4 21993137 21993172 -162295490 + AT_rich Low_complexity Low_complexity 1 35 0 314 348 66 6 chr4 21993279 21993460 -162295202 + L2 LINE L2 2768 2959 -355 474 248 102 39 chr4 21993521 21993727 -162294935 + L2 LINE L2 3095 3313 0 311 286 82 53 chr4 21994120 21994291 -162294371 + MIR SINE MIR 12 187 -75 8062 176 34 28 chr4 21994746 21997617 -162291045 + L1PA8 LINE L1 11 3826 -3758 32801 40 2 1 chr4 21997620 22002462 -162286200 + L1PA4 LINE L1 1336 6182 0 19079 111 5 2 chr4 22002463 22006214 -162282448 + L1PA8 LINE L1 3818 7596 -14 561 288 41 54 chr4 22006569 22006864 -162281798 + L2 LINE L2 2947 3237 -76 261 0 0 0 chr4 22006912 22006941 -162281721 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 424 304 27 20 chr4 22007879 22008027 -162280635 - MIR SINE MIR -100 162 14 272 288 120 33 chr4 22008972 22009156 -162279506 + MIR SINE MIR 63 262 0 580 282 40 83 chr4 22009232 22009359 -162279303 - L2 LINE L2 0 3313 3182 2248 196 34 16 chr4 22009359 22009855 -162278807 - MLT1D LTR MaLR 0 505 1 580 282 40 83 chr4 22009855 22010053 -162278609 - L2 LINE L2 -131 3182 3002 1232 202 108 38 chr4 22010083 22010424 -162278238 + MLT1A1 LTR MaLR 1 365 0 306 131 0 0 chr4 22011190 22011251 -162277411 - L1PA16 LINE L1 -8 6158 6098 4550 134 3 8 chr4 22011252 22011963 -162276699 - L1PA16 LINE L1 -105 6061 5355 614 264 18 6 chr4 22011982 22012149 -162276513 + MIR SINE MIR 89 257 -5 2305 96 3 6 chr4 22012336 22012648 -162276014 + AluSq SINE Alu 3 313 0 24 32 0 0 chr4 22012894 22012925 -162275737 + AT_rich Low_complexity Low_complexity 1 31 0 513 279 81 25 chr4 22013402 22013725 -162274937 + L1M4 LINE L1 2231 2571 -3575 21 0 0 0 chr4 22013725 22013746 -162274916 + AT_rich Low_complexity Low_complexity 1 21 0 211 409 0 11 chr4 22013797 22013885 -162274777 - L3 LINE CR1 -102 1475 1389 215 338 0 0 chr4 22013949 22014023 -162274639 - MIR SINE MIR -105 103 30 402 354 51 29 chr4 22015445 22015761 -162272901 - L2 LINE L2 -2571 743 421 290 333 38 38 chr4 22016284 22016416 -162272246 + MIR3 SINE MIR 2 133 -75 213 282 24 89 chr4 22016767 22016891 -162271771 + MIR SINE MIR 92 207 -55 251 275 9 0 chr4 22018141 22018250 -162270412 + CT-rich Low_complexity Low_complexity 2 111 0 2238 175 60 38 chr4 22018642 22019145 -162269517 - MER67D LTR ERV1 0 514 1 888 285 50 42 chr4 22019209 22019570 -162269092 - MLT1K LTR MaLR -44 544 181 3198 34 3 0 chr4 22020284 22020666 -162267996 - L1PA3 LINE L1 -3 6152 5770 239 283 20 71 chr4 22021040 22021139 -162267523 + MIR SINE MIR 54 147 -61 282 29 0 0 chr4 22021812 22021847 -162266815 + (TG)n Simple_repeat Simple_repeat 2 36 0 1849 142 26 29 chr4 22021881 22022192 -162266470 + AluSx SINE Alu 3 312 0 353 312 101 17 chr4 22022246 22022486 -162266176 - MLT1J2 LTR MaLR -170 276 1 536 309 39 11 chr4 22023743 22023924 -162264738 - MIR SINE MIR -6 256 71 838 288 75 69 chr4 22024468 22025334 -162263328 + L1MEc LINE L1 311 1181 -5215 271 143 0 36 chr4 22025402 22025458 -162263204 + L1MC1 LINE L1 6280 6333 0 2040 229 65 22 chr4 22025459 22026137 -162262525 + L1MEc LINE L1 2343 3049 -3166 1182 231 61 26 chr4 22026139 22026481 -162262181 - MLT1A2 LTR MaLR -2 372 19 3883 190 14 1 chr4 22026544 22027275 -162261387 - L1MB3 LINE L1 -124 6059 5320 443 243 32 11 chr4 22027271 22027460 -162261202 + L1MEc LINE L1 3072 3264 -2951 * 218 363 0 0 chr4 22027529 22027609 -162261053 + L2 LINE L2 3230 3309 -4 216 324 78 29 chr4 22029789 22029891 -162258771 - MIR SINE MIR -70 138 32 240 309 167 29 chr4 22030169 22030372 -162258290 - MIR SINE MIR -22 240 6 322 318 11 0 chr4 22030396 22030484 -162258178 - MIR SINE MIR -116 146 58 288 263 53 84 chr4 22032039 22032229 -162256433 - L1ME LINE L1 -336 5785 5602 258 312 56 91 chr4 22032463 22032624 -162256038 - MIR SINE MIR -20 242 90 906 172 60 51 chr4 22032624 22032839 -162255823 - MER20 DNA MER1_type 0 219 3 258 312 56 91 chr4 22032839 22032908 -162255754 - MIR SINE MIR -172 90 20 493 263 26 26 chr4 22033213 22033365 -162255297 + MIR SINE MIR 9 160 -102 1694 175 38 56 chr4 22033365 22033760 -162254902 - MLT1B LTR MaLR -2 388 1 2009 73 0 0 chr4 22033806 22034065 -162254597 - L1PA12 LINE L1 -2 6166 5908 1277 60 18 0 chr4 22034065 22034232 -162254430 + L1P4 LINE L1 5424 5593 -575 1574 136 4 4 chr4 22034320 22034577 -162254085 - L1PA16 LINE L1 -9 6157 5901 230 298 0 0 chr4 22034932 22035016 -162253646 + (TA)n Simple_repeat Simple_repeat 2 85 0 410 285 111 31 chr4 22035106 22035457 -162253205 - L1ME4a LINE L1 -213 5908 5530 1694 166 3 30 chr4 22035902 22036203 -162252459 + AluJb SINE Alu 12 304 -8 377 284 146 44 chr4 22036437 22036890 -162251772 - L1ME LINE L1 -367 5754 5255 250 255 94 38 chr4 22036925 22037031 -162251631 - L2 LINE L2 -589 2725 2614 25 65 0 0 chr4 22037142 22037188 -162251474 + AT_rich Low_complexity Low_complexity 1 46 0 1332 273 69 34 chr4 22037383 22037530 -162251132 - MLT1J LTR MaLR 0 511 371 2177 129 0 3 chr4 22037530 22037833 -162250829 - AluSq SINE Alu -11 302 1 1332 273 69 34 chr4 22037833 22038179 -162250483 - MLT1J LTR MaLR -140 371 1 254 313 12 0 chr4 22038333 22038413 -162250249 + MIR3 SINE MIR 114 194 -14 416 165 13 0 chr4 22039338 22039417 -162249245 - MER116 DNA Mariner 0 80 1 363 78 0 0 chr4 22039552 22039603 -162249059 + (TA)n Simple_repeat Simple_repeat 2 52 0 26 50 0 0 chr4 22039642 22039682 -162248980 + AT_rich Low_complexity Low_complexity 1 40 0 320 0 25 0 chr4 22040083 22040123 -162248539 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 237 312 70 21 chr4 22041318 22041418 -162247244 + MIR SINE MIR 3 107 -101 2425 64 0 0 chr4 22041604 22041901 -162246761 - AluY SINE Alu -14 297 1 248 394 43 22 chr4 22041996 22042227 -162246435 - L2 LINE L2 -89 3183 2948 235 204 56 0 chr4 22042402 22042456 -162246206 - MER58 DNA MER1_type -2140 280 224 448 172 11 23 chr4 22042518 22042605 -162246057 + MIR SINE MIR 69 154 -108 1821 268 82 30 chr4 22043242 22044105 -162244557 + L1ME1 LINE L1 36 943 -5453 4624 244 75 39 chr4 22044111 22045477 -162243185 + L1ME1 LINE L1 989 2305 -3910 469 139 13 0 chr4 22045477 22045556 -162243106 + MADE1 DNA Mariner 1 80 0 4624 244 75 39 chr4 22045556 22047249 -162241413 + L1ME1 LINE L1 2305 4142 -2073 2484 119 17 6 chr4 22047249 22047609 -162241053 - THE1B LTR MaLR 0 364 1 4624 244 75 39 chr4 22047609 22047768 -162240894 + L1ME1 LINE L1 4142 4294 -1921 2436 208 127 51 chr4 22047764 22047782 -162240880 + L1ME1 LINE L1 5399 5414 -821 * 2089 160 20 3 chr4 22047782 22048138 -162240524 + MLT1A1 LTR MaLR 3 364 -1 2436 208 127 51 chr4 22048138 22048889 -162239773 + L1ME1 LINE L1 5414 6227 -8 230 274 147 11 chr4 22050465 22050560 -162238102 - L2 LINE L2 -2 3311 3204 444 343 11 17 chr4 22051478 22051659 -162237003 - MIR SINE MIR -34 228 49 616 289 83 4 chr4 22051809 22052051 -162236611 + MIR SINE MIR 2 262 0 24 32 0 0 chr4 22052294 22052325 -162236337 + AT_rich Low_complexity Low_complexity 1 31 0 2254 98 0 0 chr4 22052380 22052689 -162235973 - AluSq SINE Alu 0 309 1 388 306 20 48 chr4 22052864 22053011 -162235651 - MIR3 SINE MIR -10 198 56 310 278 0 0 chr4 22053211 22053283 -162235379 - MIR SINE MIR 0 262 191 1891 190 35 47 chr4 22053605 22054069 -162234593 + LTR55 LTR ERV 1 458 -90 3132 171 23 18 chr4 22055818 22056419 -162232243 + MER6A DNA MER2_type 1 604 -1 422 307 58 54 chr4 22056478 22056683 -162231979 + MIR SINE MIR 21 228 -34 441 284 139 29 chr4 22056962 22057170 -162231492 - MIR SINE MIR -18 244 14 339 338 15 15 chr4 22057566 22057702 -162230960 - MIR3 SINE MIR -4 204 69 474 233 94 19 chr4 22058596 22058755 -162229907 + MLT1J2 LTR MaLR 5 175 -275 265 266 38 0 chr4 22058904 22058983 -162229679 + MLT1I LTR MaLR 305 386 -23 851 272 16 20 chr4 22059615 22059865 -162228797 - MIR SINE MIR -13 249 1 500 272 94 19 chr4 22059897 22060110 -162228552 - MIR SINE MIR -3 259 31 187 315 9 117 chr4 22060270 22060381 -162228281 + L2 LINE L2 2944 3042 -230 215 267 33 0 chr4 22061139 22061199 -162227463 + CT-rich Low_complexity Low_complexity 4 65 0 2203 180 64 104 chr4 22061806 22062479 -162226183 - MLT1E1 LTR MaLR 0 654 9 1305 262 69 10 chr4 22062756 22063426 -162225236 - L2 LINE L2 0 3313 2598 730 251 80 42 chr4 22063450 22063836 -162224826 - MER65A LTR ERV1 -44 401 1 828 294 83 65 chr4 22063837 22064296 -162224366 - MLT1E2 LTR MaLR -156 470 4 255 152 0 0 chr4 22064302 22064348 -162224314 + (CA)n Simple_repeat Simple_repeat 1 46 0 2243 208 64 17 chr4 22064440 22064974 -162223688 - MER21B LTR ERV1 -58 805 247 585 283 35 33 chr4 22065714 22066026 -162222636 - MLT1H LTR MaLR -195 354 8 308 321 152 24 chr4 22066872 22067105 -162221557 - MIR SINE MIR -6 256 3 526 253 59 59 chr4 22067745 22067966 -162220696 + MIR SINE MIR 2 222 -40 243 267 33 0 chr4 22067993 22068053 -162220609 - MER91 DNA MER1_type -1 139 78 320 292 124 7 chr4 22069107 22069244 -162219418 - MIR SINE MIR -26 236 84 707 228 7 0 chr4 22069411 22069560 -162219102 - MER58A DNA MER1_type -32 192 43 196 425 8 24 chr4 22070483 22070610 -162218052 - L2 LINE L2 -679 2635 2511 1499 146 101 51 chr4 22071026 22071382 -162217280 + THE1C LTR MaLR 2 375 0 267 226 68 122 chr4 22071410 22071706 -162216956 + MLT1H LTR MaLR 238 517 -32 192 273 36 0 chr4 22072081 22072136 -162216526 + L2 LINE L2 3221 3277 -36 183 129 0 0 chr4 22072837 22072868 -162215794 + (TCCC)n Simple_repeat Simple_repeat 2 32 0 630 141 13 32 chr4 22072877 22073033 -162215629 + CT-rich Low_complexity Low_complexity 3 155 0 980 107 6 17 chr4 22073033 22073211 -162215451 + (TTTC)n Simple_repeat Simple_repeat 1 176 0 1379 155 12 8 chr4 22073243 22073488 -162215174 + L1PA16 LINE L1 5905 6150 -16 541 300 30 35 chr4 22073632 22073832 -162214830 - MIR SINE MIR -42 220 22 304 245 32 53 chr4 22073932 22074026 -162214636 - MLT1H LTR MaLR -17 578 487 414 290 71 32 chr4 22074075 22074327 -162214335 - MLT1H LTR MaLR -227 322 61 2065 118 3 22 chr4 22074568 22074883 -162213779 + AluSc SINE Alu 1 309 0 192 158 0 0 chr4 22074965 22075003 -162213659 + (TTA)n Simple_repeat Simple_repeat 1 38 0 2335 97 0 0 chr4 22075788 22076087 -162212575 + AluSg SINE Alu 1 299 -11 270 263 53 18 chr4 22076181 22076295 -162212367 + MIR SINE MIR 89 206 -56 543 254 360 25 chr4 22076521 22076993 -162211669 + L2 LINE L2 1886 2515 -799 473 224 26 0 chr4 22077039 22077155 -162211507 + MLT1H LTR MaLR 43 161 -388 1981 188 10 3 chr4 22077188 22077571 -162211091 + MER89 LTR ERV1 172 557 -2 278 240 0 164 chr4 22077579 22077750 -162210912 + MLT1H LTR MaLR 165 307 -242 828 168 27 0 chr4 22078202 22078351 -162210311 - Tigger3b DNA MER2_type 0 1241 1089 4140 118 43 59 chr4 22078353 22079775 -162208887 - pTR5 LTR ERV1 0 2438 750 3978 156 181 2 chr4 22079775 22080700 -162207962 - Tigger3b DNA MER2_type -141 1090 1 189 290 87 0 chr4 22081511 22081580 -162207082 + MIR SINE MIR 78 152 -56 226 309 52 41 chr4 22081704 22081801 -162206861 - L2 LINE L2 -3 3269 3172 262 346 10 10 chr4 22081829 22081930 -162206732 - MIR SINE MIR -161 101 1 227 269 0 19 chr4 22082490 22082542 -162206120 + L2 LINE L2 3210 3260 -12 191 255 0 20 chr4 22082715 22082766 -162205896 - MIR SINE MIR -111 151 102 312 309 89 18 chr4 22083284 22083452 -162205210 - MIR SINE MIR -32 230 51 213 333 72 69 chr4 22084257 22084605 -162204057 + L2 LINE L2 2396 2744 -570 650 211 8 8 chr4 22084641 22084774 -162203888 + FLAM_C SINE Alu 1 133 0 5298 157 17 11 chr4 22084822 22086095 -162202567 + L1PA16 LINE L1 4885 6166 0 452 399 47 39 chr4 22086146 22086552 -162202110 + L2 LINE L2 2863 3271 -1 283 327 96 19 chr4 22086646 22086802 -162201860 + L2 LINE L2 2926 3093 -179 4081 73 68 9 chr4 22086880 22087456 -162201206 + L1PA7 LINE L1 5544 6153 -1 271 259 114 30 chr4 22087593 22087724 -162200938 + L2 LINE L2 3168 3309 -4 1638 114 9 0 chr4 22088250 22088469 -162200193 - AluSg/x SINE Alu -17 293 73 493 296 122 14 chr4 22088526 22088739 -162199923 + MIR SINE MIR 2 237 -25 201 241 0 56 chr4 22088711 22088765 -162199897 + L2 LINE L2 3255 3305 -8 * 39 68 0 0 chr4 22089249 22089323 -162199339 + AT_rich Low_complexity Low_complexity 1 74 0 1600 160 26 3 chr4 22089566 22089878 -162198784 + MER33 DNA MER1_type 2 320 -4 206 353 0 35 chr4 22089907 22089992 -162198670 - L2 LINE L2 -13 3259 3178 222 358 63 34 chr4 22090055 22090204 -162198458 + MIR SINE MIR 2 153 -65 777 271 33 9 chr4 22090480 22090694 -162197968 - MIR SINE MIR -41 221 3 520 330 89 44 chr4 22090799 22091160 -162197502 - L2 LINE L2 -438 2876 2500 30 0 0 0 chr4 22091885 22091915 -162196747 + AT_rich Low_complexity Low_complexity 1 30 0 2331 99 0 10 chr4 22092062 22092365 -162196297 - AluSq SINE Alu -13 300 1 347 307 101 11 chr4 22092459 22092638 -162196024 + L3 LINE CR1 670 864 -713 734 259 23 0 chr4 22093735 22093909 -162194753 - MER45A DNA AcHobo 0 178 1 1989 125 71 48 chr4 22094323 22094675 -162193987 + THE1B LTR MaLR 1 360 -4 353 259 43 58 chr4 22094683 22094822 -162193840 + MIR SINE MIR 60 196 -66 345 320 63 46 chr4 22095423 22095598 -162193064 + L2 LINE L2 2214 2391 -923 191 328 45 15 chr4 22095993 22096060 -162192602 - L2 LINE L2 -183 3089 3021 623 289 146 36 chr4 22096346 22096702 -162191960 - L2 LINE L2 0 3313 2919 303 383 35 0 chr4 22096754 22096895 -162191767 - L2 LINE L2 -589 2725 2580 201 74 0 0 chr4 22098111 22098138 -162190524 + (CA)n Simple_repeat Simple_repeat 2 28 0 * 459 0 0 0 chr4 22098137 22098188 -162190474 + (GA)n Simple_repeat Simple_repeat 2 52 0 1732 163 11 22 chr4 22098189 22098465 -162190197 - AluJo SINE Alu -37 275 3 1199 268 71 39 chr4 22098961 22099108 -162189554 - MLT1J LTR MaLR 0 511 370 2212 129 0 3 chr4 22099108 22099411 -162189251 - AluSq SINE Alu -11 302 1 1199 268 71 39 chr4 22099411 22099730 -162188932 - MLT1J LTR MaLR -141 370 30 799 247 31 0 chr4 22099880 22100103 -162188559 - L1ME LINE L1 -393 5771 5542 570 317 75 24 chr4 22100156 22100944 -162187718 - L1ME LINE L1 -1786 4360 3533 258 105 0 0 chr4 22100948 22100986 -162187676 + (TG)n Simple_repeat Simple_repeat 2 39 0 204 67 22 67 chr4 22101100 22101145 -162187517 + (TG)n Simple_repeat Simple_repeat 1 43 0 1392 199 44 39 chr4 22101654 22101676 -162186986 - MLT1B LTR MaLR 0 390 370 1847 175 55 40 chr4 22101676 22102098 -162186564 - MSTC LTR MaLR 0 428 1 1392 199 44 39 chr4 22102098 22102437 -162186225 - MLT1B LTR MaLR -20 370 27 21 36 0 0 chr4 22103366 22103394 -162185268 + AT_rich Low_complexity Low_complexity 1 28 0 209 328 0 0 chr4 22103696 22103763 -162184899 + GA-rich Low_complexity Low_complexity 2 68 0 5829 182 15 27 chr4 22104386 22105752 -162182910 - L1P3 LINE L1 -4056 2405 1012 573 267 24 6 chr4 22105745 22105910 -162182752 + L1P3 LINE L1 564 731 -5730 * 198 0 0 0 chr4 22156556 22156578 -162132084 + (TTG)n Simple_repeat Simple_repeat 3 24 0 25 99 0 0 chr4 22157679 22157760 -162130902 + AT_rich Low_complexity Low_complexity 1 81 0 289 263 25 75 chr4 22158087 22158247 -162130415 + MER103 DNA DNA 2 153 -13 28 48 0 0 chr4 22158323 22158365 -162130297 + AT_rich Low_complexity Low_complexity 1 42 0 2304 95 7 3 chr4 22158480 22158786 -162129876 + AluSx SINE Alu 6 312 0 610 261 61 87 chr4 22159106 22159417 -162129245 + MLT1C LTR MaLR 1 303 -164 2999 90 51 5 chr4 22159420 22159853 -162128809 - MLT2A2 LTR ERVL 0 453 1 8530 85 19 0 chr4 22159854 22160270 -162128392 - HERVL-A2 LTR ERVL -1 5653 5246 212 0 36 0 chr4 22160270 22160298 -162128364 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 8530 85 19 0 chr4 22160298 22161024 -162127638 - HERVL-A2 LTR ERVL -408 5246 4489 2582 158 25 27 chr4 22161025 22161511 -162127151 + MSTA-int LTR MaLR 1167 1651 0 2366 133 66 15 chr4 22161511 22161918 -162126744 + MSTA LTR MaLR 1 428 0 180 0 0 0 chr4 22162354 22162374 -162126288 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 306 0 0 0 chr4 22162415 22162449 -162126213 + (TG)n Simple_repeat Simple_repeat 2 35 0 295 298 50 41 chr4 22162754 22162875 -162125787 + MLT1J LTR MaLR 326 447 -64 208 245 0 20 chr4 22163154 22163203 -162125459 - MIR SINE MIR -118 144 97 185 263 0 70 chr4 22163650 22163707 -162124955 + L2 LINE L2 3205 3257 -15 228 297 16 0 chr4 22163815 22163879 -162124783 - MIR SINE MIR -151 111 47 189 225 25 0 chr4 22163961 22164001 -162124661 - L2 LINE L2 -21 3292 3252 24 0 0 0 chr4 22164269 22164293 -162124369 + AT_rich Low_complexity Low_complexity 1 24 0 2187 104 0 10 chr4 22164337 22164626 -162124036 + AluSg SINE Alu 1 286 -24 25 0 0 0 chr4 22164626 22164651 -162124011 + AT_rich Low_complexity Low_complexity 1 25 0 194 277 0 0 chr4 22165161 22165208 -162123454 - L2 LINE L2 -17 3255 3209 265 250 297 16 chr4 22165261 22165389 -162123273 + MIR SINE MIR 73 236 -26 353 330 63 10 chr4 22165486 22165692 -162122970 + MIR SINE MIR 46 262 0 27 0 0 0 chr4 22165760 22165787 -162122875 + AT_rich Low_complexity Low_complexity 1 27 0 248 368 105 0 chr4 22166207 22166321 -162122341 - L2 LINE L2 -11 3261 3136 206 267 0 0 chr4 22166780 22166825 -162121837 + L2 LINE L2 3223 3267 -5 2040 132 30 0 chr4 22167173 22167468 -162121194 - AluSx SINE Alu -8 304 1 199 350 58 19 chr4 22167476 22167579 -162121083 - MIR SINE MIR -64 144 38 673 305 156 19 chr4 22167613 22168042 -162120620 + L2 LINE L2 613 1100 -2214 323 308 58 8 chr4 22168148 22168268 -162120394 - MIR SINE MIR -97 165 40 339 113 0 0 chr4 22168855 22168908 -162119754 + (T)n Simple_repeat Simple_repeat 1 53 0 263 309 0 0 chr4 22169557 22169625 -162119037 - L2 LINE L2 -14 3299 3232 * 378 169 101 0 chr4 22169623 22169712 -162118950 + MLT2C2 LTR ERVL 46 143 -321 195 42 0 0 chr4 22172201 22172225 -162116437 + (GAAAA)n Simple_repeat Simple_repeat 4 27 0 538 304 84 21 chr4 22173175 22173412 -162115250 + MIR SINE MIR 7 258 -4 300 309 66 20 chr4 22173422 22173574 -162115088 - MIR SINE MIR -74 188 30 202 347 0 0 chr4 22173709 22173781 -162114881 + T-rich Low_complexity Low_complexity 3 74 0 * 203 200 18 36 chr4 22173730 22173785 -162114877 + CT-rich Low_complexity Low_complexity 2 55 0 22 88 0 0 chr4 22173898 22173955 -162114707 + AT_rich Low_complexity Low_complexity 1 57 0 1237 317 88 25 chr4 22174737 22175444 -162113218 + L2 LINE L2 2153 2903 -411 400 171 0 0 chr4 22175568 22175638 -162113024 - AluSq SINE Alu -18 295 226 1165 160 82 10 chr4 22175743 22175949 -162112713 - AluSq SINE Alu -92 221 1 219 233 0 0 chr4 22176273 22176316 -162112346 + GA-rich Low_complexity Low_complexity 4 46 0 952 206 57 14 chr4 22176419 22176628 -162112034 + MER20 DNA MER1_type 2 219 0 250 59 78 0 chr4 22176843 22176894 -162111768 + T-rich Low_complexity Low_complexity 1 55 0 21 36 0 0 chr4 22176988 22177016 -162111646 + AT_rich Low_complexity Low_complexity 1 28 0 254 287 46 35 chr4 22177342 22177429 -162111233 - L2 LINE L2 -4 3309 3222 705 257 33 0 chr4 22178025 22178208 -162110454 + MER5A DNA MER1_type 1 189 0 285 200 0 100 chr4 22178401 22178481 -162110181 + MER5A DNA MER1_type 35 106 -83 936 286 69 13 chr4 22178557 22179019 -162109643 + MER113 DNA MER1_type? 1 488 -33 401 287 213 7 chr4 22179075 22179225 -162109437 - MER5A DNA MER1_type 0 189 9 1885 127 53 20 chr4 22179491 22179790 -162108872 + AluSx SINE Alu 3 311 -1 608 277 98 13 chr4 22180824 22181059 -162107603 - MIR SINE MIR -5 257 3 315 345 44 34 chr4 22181353 22181559 -162107103 + MIR SINE MIR 3 210 -52 398 133 193 24 chr4 22181677 22181760 -162106902 - THE1B LTR MaLR -99 265 169 * 409 107 0 0 chr4 22181759 22181815 -162106847 - THE1B LTR MaLR -308 56 1 241 300 117 39 chr4 22181955 22182135 -162106527 + L3 LINE CR1 1376 1569 -8 1727 133 93 4 chr4 22182211 22182481 -162106181 + AluSc SINE Alu 1 294 -15 738 246 125 37 chr4 22182501 22182773 -162105889 - L2 LINE L2 -1 3312 3017 2100 296 64 58 chr4 22182795 22183520 -162105142 - L2 LINE L2 -1240 2074 1355 2592 138 2 0 chr4 22183520 22183920 -162104742 + MER57A LTR ERV1 2 402 -1 2100 296 64 58 chr4 22183920 22184001 -162104661 - L2 LINE L2 -1959 1355 1276 816 216 66 33 chr4 22184001 22184214 -162104448 + MER58A DNA MER1_type 5 224 0 2100 296 64 58 chr4 22184214 22184302 -162104360 - L2 LINE L2 -2038 1276 1190 303 28 0 0 chr4 22184302 22184338 -162104324 + (TG)n Simple_repeat Simple_repeat 1 36 0 2100 296 64 58 chr4 22184338 22184723 -162103939 - L2 LINE L2 -2124 1190 785 28 0 0 0 chr4 22185655 22185683 -162102979 + AT_rich Low_complexity Low_complexity 1 28 0 363 169 0 0 chr4 22185686 22185757 -162102905 + (CA)n Simple_repeat Simple_repeat 2 72 0 249 254 33 160 chr4 22185789 22185928 -162102734 - L2 LINE L2 -90 3182 3070 966 207 42 42 chr4 22185928 22186145 -162102517 - MER20 DNA MER1_type 0 219 3 249 254 33 160 chr4 22186145 22186186 -162102476 - L2 LINE L2 -202 3070 3025 267 312 55 28 chr4 22186427 22186536 -162102126 + MER5B DNA MER1_type 26 137 -41 511 248 215 0 chr4 22186570 22186719 -162101943 + MER5A DNA MER1_type 9 189 0 297 308 69 8 chr4 22187189 22187319 -162101343 - MIR SINE MIR -112 150 13 733 222 98 35 chr4 22187835 22187871 -162100791 - MLT2B1 LTR ERVL -8 512 480 602 49 12 0 chr4 22187871 22187953 -162100709 + (TAGA)n Simple_repeat Simple_repeat 3 85 0 733 222 98 35 chr4 22187953 22188119 -162100543 - MLT2B1 LTR ERVL -40 480 297 2620 233 82 105 chr4 22188120 22189242 -162099420 + MER52A LTR ERV1 660 1755 0 665 277 109 5 chr4 22189873 22190093 -162098569 + MIR SINE MIR 6 248 -14 397 400 5 5 chr4 22190325 22190510 -162098152 + MIR3 SINE MIR 20 204 -4 263 324 109 61 chr4 22190723 22191100 -162097562 - L2 LINE L2 -85 3228 2834 843 256 18 9 chr4 22191190 22191417 -162097245 - MIR SINE MIR -30 232 4 234 0 0 0 chr4 22191601 22191627 -162097035 + (A)n Simple_repeat Simple_repeat 1 26 0 25 0 0 0 chr4 22191674 22191699 -162096963 + AT_rich Low_complexity Low_complexity 1 25 0 356 316 18 96 chr4 22192400 22192672 -162095990 - LTR67 LTR ERVL -295 262 12 405 0 0 0 chr4 22192907 22192952 -162095710 + (CA)n Simple_repeat Simple_repeat 2 46 0 1055 214 88 13 chr4 22192968 22193286 -162095376 - MER2 DNA MER2_type 0 344 3 88 46 0 0 chr4 22194947 22195077 -162093585 + AT_rich Low_complexity Low_complexity 1 130 0 12967 227 30 47 chr4 22195095 22197094 -162091568 - L1PA16 LINE L1 -5 6812 4782 637 37 0 0 chr4 22197094 22197175 -162091487 - L1PA7 LINE L1 -2 6152 6072 12967 227 30 47 chr4 22197175 22200720 -162087942 - L1PA16 LINE L1 -2035 4782 1341 1842 315 37 60 chr4 22200743 22201634 -162087028 - L1PA16 LINE L1 -5916 871 1 687 183 53 8 chr4 22201859 22201990 -162086672 + MLT1A1 LTR MaLR 1 137 -228 1859 211 29 93 chr4 22201991 22202541 -162086121 + MLT2B2 LTR ERVL 1 515 0 664 238 17 28 chr4 22202541 22202721 -162085941 + MLT1A1 LTR MaLR 134 311 -54 378 317 120 0 chr4 22203291 22203433 -162085229 - L2 LINE L2 -8 3264 3106 183 311 122 14 chr4 22203690 22203764 -162084898 - L2 LINE L2 -12 3260 3179 25 51 0 0 chr4 22203856 22203895 -162084767 + AT_rich Low_complexity Low_complexity 1 39 0 547 202 65 8 chr4 22203913 22204037 -162084625 + MLT1A1 LTR MaLR 6 136 -229 5459 221 31 45 chr4 22204380 22204797 -162083865 + L1PB4 LINE L1 3986 4407 -1749 221 0 35 0 chr4 22204797 22204826 -162083836 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 5459 221 31 45 chr4 22204826 22206613 -162082049 + L1PB4 LINE L1 4407 6153 -3 315 364 8 8 chr4 22207184 22207302 -162081360 + MIR SINE MIR 16 133 -129 24 53 0 0 chr4 22207428 22207466 -162081196 + AT_rich Low_complexity Low_complexity 1 38 0 597 272 53 6 chr4 22207700 22207869 -162080793 - MER5A DNA MER1_type -11 178 2 251 170 21 0 chr4 22207882 22207929 -162080733 + MER5B DNA MER1_type 7 54 -124 2003 110 3 7 chr4 22208029 22208311 -162080351 - AluY SINE Alu -30 281 1 569 278 120 29 chr4 22208870 22209079 -162079583 - MIR SINE MIR -3 259 32 23 0 0 0 chr4 22211034 22211057 -162077605 + AT_rich Low_complexity Low_complexity 1 23 0 470 209 8 0 chr4 22211681 22211696 -162076966 + (TA)n Simple_repeat Simple_repeat 2 15 -116 314 138 0 0 chr4 22211696 22211761 -162076901 - L1PB3 LINE L1 -1 6153 6089 470 209 8 0 chr4 22211761 22211803 -162076859 + (TA)n Simple_repeat Simple_repeat 15 55 -76 4576 128 19 26 chr4 22211803 22212594 -162076068 - LTR1 LTR ERV1 0 785 1 470 209 8 0 chr4 22212594 22212664 -162075998 + (TA)n Simple_repeat Simple_repeat 55 131 0 3721 148 42 2 chr4 22212749 22213364 -162075298 - MER39B LTR ERV1 0 653 14 1034 208 105 68 chr4 22213482 22213910 -162074752 - MER39 LTR ERV1 -3 704 261 561 164 78 8 chr4 22214071 22214199 -162074463 - LTR48 LTR ERV1 -42 745 609 1480 203 121 34 chr4 22214226 22214665 -162073997 - LTR48 LTR ERV1 -310 477 1 548 146 0 24 chr4 22215574 22215697 -162072965 + (GGAA)n Simple_repeat Simple_repeat 1 120 0 486 333 45 5 chr4 22215847 22216048 -162072614 + MIR SINE MIR 47 255 -7 530 264 63 55 chr4 22216163 22216546 -162072116 - Charlie2 DNA MER1_type -249 2613 2228 480 315 113 0 chr4 22216584 22216806 -162071856 - Charlie2 DNA MER1_type -2467 315 69 5725 60 10 7 chr4 22217045 22218185 -162070477 - L1PA7 LINE L1 0 6154 4995 1455 102 0 0 chr4 22218285 22218491 -162070171 - L1PA7 LINE L1 -1108 5038 4833 23 0 0 0 chr4 22218580 22218603 -162070059 + AT_rich Low_complexity Low_complexity 1 23 0 424 177 16 8 chr4 22218613 22218737 -162069925 - L1M4 LINE L1 -3175 2971 2847 342 250 38 30 chr4 22218835 22218967 -162069695 - MER104 DNA Tc2 -17 163 31 244 299 80 76 chr4 22219011 22219429 -162069233 + L2 LINE L2 2724 3155 -158 30 27 0 0 chr4 22219791 22219828 -162068834 + AT_rich Low_complexity Low_complexity 1 37 0 379 289 94 8 chr4 22220054 22220182 -162068480 + L2 LINE L2 3173 3311 -2 1601 189 29 3 chr4 22220407 22220720 -162067942 - MLT1A1 LTR MaLR 0 365 45 223 129 0 0 chr4 22220722 22220753 -162067909 + (TCCC)n Simple_repeat Simple_repeat 1 31 0 773 154 7 0 chr4 22220753 22220896 -162067766 + CT-rich Low_complexity Low_complexity 3 146 0 1771 175 24 0 chr4 22220898 22221195 -162067467 - AluJb SINE Alu -6 306 3 388 109 0 0 chr4 22221197 22221252 -162067410 - MLT1A1 LTR MaLR -310 55 1 505 314 76 52 chr4 22221554 22221936 -162066726 - MLT1I LTR MaLR 0 409 19 321 309 85 42 chr4 22222187 22222517 -162066145 - L1M4 LINE L1 -2686 3460 3117 825 318 63 36 chr4 22222671 22223304 -162065358 - L1MC4a LINE L1 -1849 5959 5310 732 328 81 30 chr4 22223357 22223998 -162064664 - L1MC4a LINE L1 -906 5240 4567 313 209 71 88 chr4 22224120 22224245 -162064417 - MLT1A2 LTR MaLR -5 369 260 3051 229 21 16 chr4 22224338 22225130 -162063532 - MLT1B-int LTR MaLR -481 890 3 623 259 63 5 chr4 22225134 22225323 -162063339 - MLT1B LTR MaLR -2 388 189 266 246 0 0 chr4 22225323 22225388 -162063274 + MLT1I LTR MaLR 187 251 -139 1288 352 56 36 chr4 22225402 22226545 -162062117 + ERVL LTR ERVL 4164 5329 -435 283 288 105 37 chr4 22226812 22227003 -162061659 + HAL1 LINE L1 2111 2314 -193 3504 158 45 2 chr4 22227156 22227801 -162060861 - L1MC1 LINE L1 -405 5928 5256 1990 240 55 50 chr4 22227840 22227941 -162060721 - L1MC1 LINE L1 -880 5266 5167 192 40 0 0 chr4 22227941 22227966 -162060696 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1990 240 55 50 chr4 22227966 22227990 -162060672 - L1MC1 LINE L1 -979 5167 5145 1570 133 0 40 chr4 22227990 22228238 -162060424 - AluSx SINE Alu -74 238 1 1990 240 55 50 chr4 22228238 22228893 -162059769 - L1MC1 LINE L1 -1001 5145 4481 2167 114 76 12 chr4 22231502 22231844 -162056818 - THE1B LTR MaLR 0 364 1 272 240 52 31 chr4 22232911 22233007 -162055655 + MLT1J2 LTR MaLR 68 165 -285 334 186 0 17 chr4 22233151 22233210 -162055452 + MLT1I LTR MaLR 352 409 0 1925 179 144 2 chr4 22233503 22233899 -162054763 - LTR47A LTR ERVL 0 452 1 218 372 54 23 chr4 22234307 22234436 -162054226 + L2 LINE L2 2928 3060 -212 234 128 0 0 chr4 22235005 22235044 -162053618 + (T)n Simple_repeat Simple_repeat 1 39 0 754 320 37 10 chr4 22235489 22235786 -162052876 + L1M3c LINE L1 523 827 -5836 261 292 31 42 chr4 22235753 22235849 -162052813 + L1M3c LINE L1 1290 1384 -5269 * 284 264 64 18 chr4 22235877 22235987 -162052675 + L1M3c LINE L1 1315 1429 -5234 2517 254 32 4 chr4 22236049 22236778 -162051884 + L1M3c LINE L1 1342 2090 -4573 398 301 65 0 chr4 22236862 22236985 -162051677 - MIR SINE MIR -72 190 60 248 306 0 0 chr4 22237129 22237201 -162051461 + CT-rich Low_complexity Low_complexity 1 72 0 441 265 27 138 chr4 22239013 22239073 -162049589 - MLT1J LTR MaLR -140 371 306 2068 125 24 0 chr4 22239073 22239361 -162049301 + AluSq SINE Alu 1 295 -18 441 265 27 138 chr4 22239361 22239598 -162049064 - MLT1J LTR MaLR -205 306 107 36 0 0 0 chr4 22239600 22239636 -162049026 + AT_rich Low_complexity Low_complexity 1 36 0 467 298 147 31 chr4 22239863 22240255 -162048407 - LTR33A LTR ERVL -47 476 66 338 298 25 63 chr4 22240413 22240571 -162048091 + MIR SINE MIR 49 200 -62 525 303 20 10 chr4 22240736 22240934 -162047728 - MIR SINE MIR -46 216 17 23 54 0 0 chr4 22240989 22241026 -162047636 + AT_rich Low_complexity Low_complexity 1 37 0 252 0 0 0 chr4 22241131 22241159 -162047503 + (A)n Simple_repeat Simple_repeat 1 28 0 750 303 31 18 chr4 22241563 22241791 -162046871 - MIR SINE MIR -29 233 3 2300 91 0 0 chr4 22241818 22242125 -162046537 - AluSx SINE Alu -5 307 1 295 379 107 35 chr4 22243540 22243878 -162044784 + MLT1K LTR MaLR 69 430 -158 1236 34 0 0 chr4 22243901 22244050 -162044612 + (GAA)n Simple_repeat Simple_repeat 2 150 0 260 243 72 73 chr4 22244339 22244467 -162044195 - MLT1H1 LTR MaLR 0 595 410 509 250 39 82 chr4 22244593 22244830 -162043832 - MLT1H1 LTR MaLR -289 266 39 1379 220 72 0 chr4 22246530 22246848 -162041814 - MER58B DNA MER1_type 0 341 1 2048 156 84 17 chr4 22246973 22247377 -162041285 + MSTB1 LTR MaLR 1 431 -1 530 227 13 39 chr4 22247569 22247723 -162040939 + MER58 DNA MER1_type 84 233 -108 211 307 27 0 chr4 22247777 22247852 -162040810 - MIR SINE MIR 0 262 186 216 250 0 33 chr4 22248107 22248167 -162040495 - MIR SINE MIR -101 161 104 990 329 40 3 chr4 22248348 22248722 -162039940 - LTR16B LTR ERVL -74 390 3 251 312 47 53 chr4 22250549 22250719 -162037943 + L2 LINE L2 3114 3282 -31 667 285 77 59 chr4 22252017 22252340 -162036322 + LTR16A LTR ERVL 95 423 -27 1111 251 92 8 chr4 22253062 22253660 -162035002 + MER114 LTR ERV 1 648 0 2890 182 10 17 chr4 22253867 22254466 -162034196 - L1MB2 LINE L1 -4 6167 5573 1245 127 25 15 chr4 22254470 22254667 -162033995 + THE1B LTR MaLR 14 212 -152 180 0 0 0 chr4 22254824 22254844 -162033818 + (CA)n Simple_repeat Simple_repeat 1 20 0 297 346 60 11 chr4 22254863 22255045 -162033617 - MLT1J LTR MaLR -320 191 1 2280 104 0 3 chr4 22255606 22255913 -162032749 + AluSc SINE Alu 3 308 -1 23 33 0 0 chr4 22255983 22256013 -162032649 + AT_rich Low_complexity Low_complexity 1 30 0 887 18 18 9 chr4 22256397 22256511 -162032151 + L1PA4 LINE L1 6041 6155 0 276 344 62 23 chr4 22256593 22256721 -162031941 + L2 LINE L2 3179 3311 -2 279 0 0 0 chr4 22256965 22256996 -162031666 + (CA)n Simple_repeat Simple_repeat 2 32 0 22 35 0 0 chr4 22257166 22257195 -162031467 + AT_rich Low_complexity Low_complexity 1 29 0 24 67 0 0 chr4 22257361 22257406 -162031256 + AT_rich Low_complexity Low_complexity 1 45 0 388 136 0 0 chr4 22258514 22258573 -162030089 + THE1B LTR MaLR 306 364 0 4872 223 23 73 chr4 22258573 22258700 -162029962 - L1M4 LINE L1 -598 5586 5454 635 65 11 0 chr4 22258700 22258792 -162029870 - L1MA1 LINE L1 0 6302 6210 4872 223 23 73 chr4 22258792 22258829 -162029833 - L1M4 LINE L1 -730 5454 5417 221 0 0 33 chr4 22258829 22258859 -162029803 + (TTTTA)n Simple_repeat Simple_repeat 1 29 0 2414 81 3 12 chr4 22258861 22259196 -162029466 - L1PA7 LINE L1 -4 6150 5819 4872 223 23 73 chr4 22259196 22260995 -162027667 - L1M4 LINE L1 -768 5416 3725 1991 167 108 15 chr4 22261002 22261392 -162027270 - MSTB LTR MaLR 0 426 1 3961 209 116 26 chr4 22261398 22262495 -162026167 - MSTB-int LTR MaLR -7 1644 317 2286 82 4 0 chr4 22262495 22262775 -162025887 - AluSp SINE Alu -32 281 1 3961 209 116 26 chr4 22262775 22263122 -162025540 - MSTB-int LTR MaLR -1334 317 3 1927 183 80 10 chr4 22263122 22263520 -162025142 - MSTB LTR MaLR 0 426 1 1202 227 152 25 chr4 22263522 22264113 -162024549 - L1M4 LINE L1 -2424 3722 3057 1512 167 12 0 chr4 22264227 22264484 -162024178 + L1MC1 LINE L1 6074 6333 0 1389 248 98 21 chr4 22264811 22265238 -162023424 + MLT1E LTR MaLR 127 586 -7 429 258 174 24 chr4 22265537 22265704 -162022958 + MIR SINE MIR 71 262 0 220 293 0 89 chr4 22266537 22266660 -162022002 - MIR SINE MIR -30 232 121 686 280 105 52 chr4 22267419 22267858 -162020804 - MLT1C LTR MaLR 0 467 6 218 307 44 51 chr4 22267954 22268091 -162020571 + MIR SINE MIR 124 259 -3 269 383 27 13 chr4 22268238 22268387 -162020275 - MIR3 SINE MIR -28 180 30 846 210 6 0 chr4 22268521 22268683 -162019979 + MLT2B1 LTR ERVL 1 163 -357 299 176 0 15 chr4 22268708 22268776 -162019886 + (TG)n Simple_repeat Simple_repeat 2 68 0 316 271 8 45 chr4 22268776 22268909 -162019753 + (TATATG)n Simple_repeat Simple_repeat 2 129 0 573 252 17 0 chr4 22268909 22269028 -162019634 + Tigger3(Golem) DNA MER2_type 2 122 -2907 * 2989 111 111 110 chr4 22269018 22269757 -162018905 + Tigger3(Golem) DNA MER2_type 2288 3027 -2 344 222 29 8 chr4 22269757 22270008 -162018654 + (TA)n Simple_repeat Simple_repeat 1 256 0 1444 241 111 24 chr4 22270049 22270468 -162018194 + MLT2B1 LTR ERVL 1 396 -57 276 30 0 0 chr4 22270468 22270501 -162018161 + (TG)n Simple_repeat Simple_repeat 2 34 0 1444 241 111 24 chr4 22270501 22270531 -162018131 + MLT2B1 LTR ERVL 396 422 -31 233 147 53 27 chr4 22270535 22270610 -162018052 + (TTATA)n Simple_repeat Simple_repeat 3 79 0 320 50 0 0 chr4 22270610 22270650 -162018012 - HERVL LTR ERVL -5614 40 1 1032 152 0 0 chr4 22270689 22270854 -162017808 + MER65A LTR ERV1 234 398 -47 662 279 0 0 chr4 22270874 22271035 -162017627 + HERVL-B1 LTR ERVL 3 163 -5491 2442 241 31 22 chr4 22271051 22271595 -162017067 + MSTD-int LTR MaLR 1187 1735 0 879 240 77 28 chr4 22271630 22271974 -162016688 + MSTD LTR MaLR 6 396 0 4993 167 65 11 chr4 22271974 22272933 -162015729 + ERVL-B1 LTR ERVL 4704 5713 -51 230 205 0 60 chr4 22272933 22273016 -162015646 + (TATATG)n Simple_repeat Simple_repeat 4 81 0 1235 237 41 109 chr4 22273039 22273432 -162015230 + MLT2B1 LTR ERVL 1 366 -48 273 178 9 84 chr4 22273477 22273584 -162015078 + (TATATG)n Simple_repeat Simple_repeat 4 102 0 236 343 0 0 chr4 22273752 22273825 -162014837 + L2 LINE L2 3241 3313 0 1392 129 0 0 chr4 22274451 22274644 -162014018 + AluSg/x SINE Alu 98 290 -22 180 111 0 0 chr4 22274651 22274678 -162013984 + (TAG)n Simple_repeat Simple_repeat 1 27 0 1043 221 84 58 chr4 22274838 22275218 -162013444 - MLT1B LTR MaLR 0 390 1 340 328 55 45 chr4 22276842 22277043 -162011619 + L3 LINE CR1 898 1100 -477 492 376 32 29 chr4 22277315 22277658 -162011004 + L3 LINE CR1 1228 1571 -6 23 33 0 0 chr4 22277782 22277812 -162010850 + AT_rich Low_complexity Low_complexity 1 30 0 250 200 0 25 chr4 22277837 22277917 -162010745 + (TA)n Simple_repeat Simple_repeat 2 79 0 269 272 0 22 chr4 22277921 22278013 -162010649 - L1MC4 LINE L1 -1339 6703 6614 * 1009 294 137 4 chr4 22278003 22278469 -162010193 + L1ME3A LINE L1 5638 6165 -5 1400 248 15 24 chr4 22278846 22278904 -162009758 - L1M4 LINE L1 -3035 2999 2942 2540 129 44 2 chr4 22278904 22279315 -162009347 + MSTA LTR MaLR 1 428 0 1400 248 15 24 chr4 22279315 22279719 -162008943 - L1M4 LINE L1 -3092 2942 2541 304 212 12 12 chr4 22279724 22279809 -162008853 - L1M4 LINE L1 -4887 1068 984 28 48 0 0 chr4 22279986 22280028 -162008634 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr4 22280658 22280679 -162007983 + AT_rich Low_complexity Low_complexity 1 21 0 531 66 0 0 chr4 22281230 22281306 -162007356 + (TCTA)n Simple_repeat Simple_repeat 1 76 0 2040 124 6 39 chr4 22282189 22282544 -162006118 - L1M3 LINE L1 -416 5752 5410 1763 167 128 34 chr4 22282556 22282773 -162005889 - MSTB1 LTR MaLR -13 419 224 2169 101 7 0 chr4 22282773 22283070 -162005592 - AluSp SINE Alu -13 300 2 1763 167 128 34 chr4 22283070 22283235 -162005427 - MSTB1 LTR MaLR -208 224 1 7410 219 16 25 chr4 22283247 22284898 -162003764 - MSTB1-int LTR MaLR -14 1637 2 1087 173 81 18 chr4 22284901 22285257 -162003405 - MSTB1 LTR MaLR -2 430 1 390 214 0 12 chr4 22285370 22285454 -162003208 - MSTB LTR MaLR -336 90 8 1015 195 9 4 chr4 22285468 22285694 -162002968 - L1M3 LINE L1 -762 5384 5158 1882 196 7 19 chr4 22285696 22286119 -162002543 + L1MB2 LINE L1 5752 6169 -2 186 250 236 57 chr4 22288324 22288536 -162000126 + L2 LINE L2 1795 2044 -1270 216 262 98 0 chr4 22288657 22288718 -161999944 + MIR SINE MIR 186 252 -10 237 371 65 21 chr4 22289023 22289209 -161999453 + L2 LINE L2 2767 2960 -354 232 169 108 72 chr4 22289295 22289378 -161999284 - MIR SINE MIR -117 145 60 1404 128 11 92 chr4 22289667 22289940 -161998722 + MSTC LTR MaLR 1 251 -177 2575 258 57 51 chr4 22290157 22290803 -161997859 - L1ME1 LINE L1 -3 6163 5522 1769 165 131 28 chr4 22290803 22291191 -161997471 + MSTA LTR MaLR 1 428 0 2575 258 57 51 chr4 22291191 22291715 -161996947 - L1ME1 LINE L1 -644 5522 4975 180 0 0 0 chr4 22291715 22291735 -161996927 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2575 258 57 51 chr4 22291735 22292218 -161996444 - L1ME1 LINE L1 -1191 4975 4496 24 32 0 0 chr4 22292288 22292319 -161996343 + AT_rich Low_complexity Low_complexity 1 31 0 317 290 40 0 chr4 22292337 22292448 -161996214 + MLT2A2 LTR ERVL 281 461 -93 4128 199 23 10 chr4 22292548 22293776 -161994886 - L1M2 LINE L1 -694 5597 4348 * 5272 200 24 7 chr4 22293758 22295078 -161993584 - L1PB2 LINE L1 -2 6149 4795 189 0 0 0 chr4 22295078 22295099 -161993563 + (CTATT)n Simple_repeat Simple_repeat 5 25 0 5272 200 24 7 chr4 22295099 22295377 -161993285 - L1PB2 LINE L1 -1356 4795 4523 1445 278 23 23 chr4 22295769 22296208 -161992454 - L1M3b LINE L1 -5829 452 14 * 1565 269 22 22 chr4 22296190 22296774 -161991888 - L1ME1 LINE L1 -1773 4373 3790 186 330 115 58 chr4 22297023 22297214 -161991448 + L3 LINE CR1 900 1101 -476 239 378 28 21 chr4 22297570 22297713 -161990949 + L3 LINE CR1 1384 1527 -50 291 325 68 86 chr4 22299364 22299877 -161988785 - L2 LINE L2 -369 2945 2442 247 361 8 34 chr4 22299931 22300050 -161988612 + MER5A DNA MER1_type 9 124 -65 395 281 117 29 chr4 22301759 22301930 -161986732 + MER5A DNA MER1_type 1 186 -3 29 78 0 0 chr4 22301993 22302057 -161986605 + AT_rich Low_complexity Low_complexity 1 64 0 356 311 140 6 chr4 22302424 22302588 -161986074 + MIR SINE MIR 17 202 -60 1090 195 186 30 chr4 22302641 22303011 -161985651 + MSTC LTR MaLR 1 428 0 203 203 0 85 chr4 22303039 22303098 -161985564 + MIR SINE MIR 208 261 -1 2329 113 3 51 chr4 22303272 22303645 -161985017 + THE1A LTR MaLR 1 355 0 417 356 27 11 chr4 22303906 22304094 -161984568 + MIR SINE MIR 2 192 -70 29 47 0 0 chr4 22304623 22304666 -161983996 + AT_rich Low_complexity Low_complexity 1 43 0 221 302 203 16 chr4 22306529 22306721 -161981941 + MIR SINE MIR 3 230 -32 192 384 64 25 chr4 22307465 22307668 -161980994 - MIR SINE MIR -38 224 14 216 200 0 46 chr4 22307765 22307830 -161980832 + (TAA)n Simple_repeat Simple_repeat 1 62 0 233 349 94 0 chr4 22308755 22308861 -161979801 + L2 LINE L2 2934 3049 -264 576 292 0 60 chr4 22309028 22309213 -161979449 - MER58B DNA MER1_type 0 341 168 2146 116 3 0 chr4 22309217 22309511 -161979151 + AluSp SINE Alu 8 302 -11 258 316 13 0 chr4 22309597 22309676 -161978986 + L2 LINE L2 3193 3272 0 252 308 238 19 chr4 22310158 22310372 -161978290 - MIR SINE MIR 0 262 2 320 345 74 7 chr4 22310642 22310790 -161977872 - MIR3 SINE MIR -17 191 34 270 0 0 0 chr4 22310889 22310919 -161977743 + (TG)n Simple_repeat Simple_repeat 2 31 0 692 279 54 20 chr4 22310973 22311177 -161977485 - MIR SINE MIR -32 230 20 1742 114 55 4 chr4 22311676 22311948 -161976714 - L1PA13 LINE L1 -7 6156 5871 815 57 0 0 chr4 22311948 22312053 -161976609 + L1P4 LINE L1 5673 5777 -386 401 248 124 39 chr4 22312181 22312463 -161976199 + HAL1 LINE L1 2111 2416 -91 1306 86 0 0 chr4 22312692 22312854 -161975808 + AluSq SINE Alu 1 162 -151 30 27 0 0 chr4 22312868 22312905 -161975757 + AT_rich Low_complexity Low_complexity 1 37 0 298 247 21 21 chr4 22312936 22312996 -161975666 + CT-rich Low_complexity Low_complexity 4 67 -29 1816 157 3 11 chr4 22312996 22313306 -161975356 - AluSx SINE Alu 0 308 1 298 247 21 21 chr4 22313306 22313337 -161975325 + CT-rich Low_complexity Low_complexity 66 96 0 411 201 13 31 chr4 22313354 22313513 -161975149 + CT-rich Low_complexity Low_complexity 4 159 0 330 240 171 8 chr4 22314076 22314205 -161974457 - MIR SINE MIR -64 198 49 713 237 16 8 chr4 22314444 22314752 -161973910 + MLT1A1 LTR MaLR 1 365 0 243 376 37 31 chr4 22314998 22315160 -161973502 + L2 LINE L2 3088 3250 -22 256 252 53 139 chr4 22316282 22316433 -161972229 + MIR3 SINE MIR 30 167 -41 406 268 8 49 chr4 22317515 22317638 -161971024 + L2 LINE L2 3192 3309 -4 23 0 0 0 chr4 22317925 22317948 -161970714 + AT_rich Low_complexity Low_complexity 1 23 0 219 342 5 14 chr4 22318244 22318339 -161970323 + MER91 DNA MER1_type 101 187 -3 234 128 0 0 chr4 22318369 22318408 -161970254 + (CA)n Simple_repeat Simple_repeat 1 39 0 231 322 42 106 chr4 22318649 22318913 -161969749 + L2 LINE L2 3022 3268 -4 289 307 47 31 chr4 22319111 22319238 -161969424 + MIR SINE MIR 36 164 -98 2109 111 14 0 chr4 22319276 22319573 -161969089 + AluSc SINE Alu 1 301 -8 260 250 125 36 chr4 22320249 22320361 -161968301 + MIR SINE MIR 20 141 -121 180 321 62 12 chr4 22320486 22320567 -161968095 + MIR SINE MIR 22 106 -156 192 77 0 0 chr4 22320578 22320604 -161968058 + (T)n Simple_repeat Simple_repeat 1 26 0 325 186 0 0 chr4 22320627 22320686 -161967976 - L1MB5 LINE L1 -8 6166 6108 223 226 0 19 chr4 22321453 22321506 -161967156 + (TA)n Simple_repeat Simple_repeat 1 52 0 * 301 341 15 8 chr4 22321479 22321611 -161967051 + L1MC4 LINE L1 6586 6718 -1324 255 152 38 0 chr4 22321614 22321693 -161966969 + (TCTA)n Simple_repeat Simple_repeat 4 85 0 2790 123 34 0 chr4 22321817 22322225 -161966437 + MER57B LTR ERV1 13 434 0 222 297 47 70 chr4 22322771 22322899 -161965763 - L2 LINE L2 -3 3269 3145 267 253 0 76 chr4 22323573 22323652 -161965010 + L2 LINE L2 3239 3311 -2 679 220 29 23 chr4 22323891 22324064 -161964598 + MIR SINE MIR 89 262 0 391 331 0 8 chr4 22324334 22324455 -161964207 - MIR SINE MIR -128 134 15 555 322 53 23 chr4 22325645 22325909 -161962753 - MLT1I LTR MaLR -74 335 64 434 255 76 11 chr4 22326329 22326589 -161962073 + L1M4c LINE L1 3155 3435 -4130 227 250 0 0 chr4 22326590 22326642 -161962020 + LTR30 LTR ERV1 1 52 -670 537 72 0 0 chr4 22326642 22326711 -161961951 + LTR12 LTR ERV1 53 121 -593 * 1651 83 31 10 chr4 22326708 22326966 -161961696 + LTR12 LTR ERV1 349 714 0 552 239 28 23 chr4 22326990 22327204 -161961458 + L1M4c LINE L1 3434 3648 -3917 1041 198 20 142 chr4 22327204 22327613 -161961049 + MLT1A1 LTR MaLR 1 359 -6 4539 239 44 24 chr4 22327635 22328438 -161960224 + L1M4c LINE L1 3672 4458 -3107 2269 88 3 22 chr4 22328438 22328756 -161959906 + AluSx SINE Alu 1 312 0 4539 239 44 24 chr4 22328756 22329105 -161959557 + L1M4c LINE L1 4458 4799 -2766 1807 63 9 0 chr4 22329105 22329326 -161959336 + AluSp SINE Alu 89 311 -2 4539 239 44 24 chr4 22329326 22329698 -161958964 + L1M4c LINE L1 4799 5227 -2338 1058 288 119 34 chr4 22330013 22330566 -161958096 + MLT1E2 LTR MaLR 22 621 -5 770 279 40 5 chr4 22330710 22330932 -161957730 - MIR SINE MIR -26 236 7 180 77 0 0 chr4 22331304 22331330 -161957332 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 987 226 5 0 chr4 22331361 22331573 -161957089 + MER58A DNA MER1_type 12 224 0 2514 116 5 13 chr4 22331573 22331939 -161956723 - THE1C LTR MaLR 0 375 11 4915 82 25 23 chr4 22331939 22332626 -161956036 - LTR12 LTR ERV1 0 688 1 2514 116 5 13 chr4 22332626 22332637 -161956025 - THE1C LTR MaLR -364 11 1 27 29 0 0 chr4 22332657 22332691 -161955971 + AT_rich Low_complexity Low_complexity 1 34 0 211 371 34 0 chr4 22333046 22333135 -161955527 - MIR SINE MIR -85 177 86 629 161 0 0 chr4 22333994 22334087 -161954575 + AluSx SINE Alu 1 93 -220 4904 129 18 7 chr4 22334087 22334857 -161953805 + MER4E LTR ERV1 1 779 0 1515 124 0 18 chr4 22334857 22335075 -161953587 + AluSx SINE Alu 90 303 -9 1127 156 14 9 chr4 22335323 22335534 -161953128 - L1MA8 LINE L1 -211 6080 5869 840 197 34 0 chr4 22335534 22335735 -161952927 + L1MA8 LINE L1 6073 6287 -4 501 72 0 0 chr4 22335754 22335823 -161952839 - MER41B LTR ERV1 0 635 567 219 280 0 0 chr4 22336591 22336641 -161952021 - L2 LINE L2 -2 3311 3262 1806 175 75 34 chr4 22336720 22337159 -161951503 + LTR2B LTR ERV1 34 490 0 591 195 207 6 chr4 22337778 22337947 -161950715 + Tigger3(Golem) DNA MER2_type 2826 3028 -1 300 223 11 64 chr4 22337947 22338041 -161950621 - L1MC4 LINE L1 -1339 6703 6615 293 202 17 17 chr4 22338079 22338198 -161950464 + (TA)n Simple_repeat Simple_repeat 1 119 0 1302 238 122 19 chr4 22338239 22338650 -161950012 + MLT2B1 LTR ERVL 1 453 -67 276 30 0 0 chr4 22338658 22338691 -161949971 + (TG)n Simple_repeat Simple_repeat 2 34 0 256 167 59 20 chr4 22338698 22338800 -161949862 + (TTATA)n Simple_repeat Simple_repeat 3 108 0 307 50 0 0 chr4 22338800 22338840 -161949822 - HERVL LTR ERVL -5614 40 1 898 176 0 0 chr4 22338879 22339044 -161949618 + MER65A LTR ERV1 234 398 -47 2028 99 46 3 chr4 22339539 22339822 -161948840 + AluSg SINE Alu 1 295 -15 216 346 75 27 chr4 22340014 22340202 -161948460 + L2 LINE L2 1598 1794 -1520 997 213 43 3 chr4 22340231 22340560 -161948102 + L1P LINE L1 4960 5301 -845 916 245 90 97 chr4 22340699 22340813 -161947849 - L1M4 LINE L1 -1057 5089 4976 180 0 0 0 chr4 22340813 22340833 -161947829 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 916 245 90 97 chr4 22340833 22341319 -161947343 - L1M4 LINE L1 -1170 4976 4493 840 138 51 66 chr4 22341436 22341648 -161947014 + MLT2A2 LTR ERVL 298 453 0 1369 177 3 36 chr4 22341648 22341981 -161946681 - L1M2 LINE L1 -672 5619 5298 2452 266 38 2 chr4 22342216 22343002 -161945660 + L1 LINE L1 2270 3083 -3063 2075 128 24 0 chr4 22343002 22343290 -161945372 + AluSq SINE Alu 1 295 -18 385 243 0 0 chr4 22343453 22343527 -161945135 - MLT1J1 LTR MaLR -305 141 68 29 28 0 0 chr4 22343529 22343565 -161945097 + AT_rich Low_complexity Low_complexity 1 36 0 528 278 98 23 chr4 22343917 22344090 -161944572 + MIR SINE MIR 74 259 -3 2281 93 0 0 chr4 22344649 22344940 -161943722 + AluY SINE Alu 1 291 -20 410 234 73 44 chr4 22344994 22345131 -161943531 - MER5B DNA MER1_type -31 147 7 256 263 25 75 chr4 22345383 22345543 -161943119 + MER103 DNA DNA 2 153 -13 28 48 0 0 chr4 22345619 22345661 -161943001 + AT_rich Low_complexity Low_complexity 1 42 0 2198 110 0 7 chr4 22345776 22346085 -161942577 + AluSx SINE Alu 6 312 0 481 277 19 6 chr4 22346399 22346558 -161942104 + MLT1C LTR MaLR 1 161 -306 250 133 0 22 chr4 22346633 22346678 -161941984 + MLT1C LTR MaLR 226 269 -198 378 184 114 38 chr4 22346715 22346873 -161941789 - MLT2A2 LTR ERVL -1 452 283 2034 177 5 60 chr4 22347225 22347661 -161941001 + MLT2D LTR ERVL 3 414 0 2329 130 66 17 chr4 22348894 22349302 -161939360 - MSTA LTR MaLR 0 428 1 1930 129 31 34 chr4 22349302 22349683 -161938979 - MSTA-int LTR MaLR 0 1651 1272 21 0 0 0 chr4 22350565 22350586 -161938076 + AT_rich Low_complexity Low_complexity 1 21 0 297 346 41 60 chr4 22351063 22351329 -161937333 - L2 LINE L2 0 3272 3012 683 221 121 53 chr4 22351892 22352214 -161936448 + MER39 LTR ERV1 361 704 -3 3476 151 42 2 chr4 22352332 22352947 -161935715 + MER39B LTR ERV1 14 653 0 237 65 0 0 chr4 22353050 22353081 -161935581 + (CA)n Simple_repeat Simple_repeat 2 32 0 1424 115 12 16 chr4 22353084 22353336 -161935326 + LTR1 LTR ERV1 1 251 -534 311 274 97 32 chr4 22354252 22354376 -161934286 - L1ME3A LINE L1 -9 6161 6030 411 262 36 91 chr4 22354666 22354887 -161933775 - MER58C DNA MER1_type -2 213 5 433 152 0 95 chr4 22355455 22355560 -161933102 + L1M2 LINE L1 5452 5546 -754 471 318 41 82 chr4 22355655 22356020 -161932642 + L2 LINE L2 2923 3272 0 234 0 0 0 chr4 22356365 22356391 -161932271 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2008 123 40 7 chr4 22356683 22356983 -161931679 + AluSg SINE Alu 1 310 0 202 298 32 32 chr4 22357937 22358031 -161930631 - L2 LINE L2 -349 2964 2871 388 326 71 52 chr4 22358279 22358604 -161930058 - L2 LINE L2 -610 2704 2374 21 36 0 0 chr4 22359752 22359780 -161928882 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 22360779 22360807 -161927855 + AT_rich Low_complexity Low_complexity 1 28 0 616 328 43 17 chr4 22360930 22361165 -161927497 + MIR SINE MIR 11 251 -11 217 368 0 0 chr4 22361196 22361272 -161927390 + L3 LINE CR1 1495 1570 -7 257 305 168 30 chr4 22361553 22361720 -161926942 + MIR SINE MIR 21 210 -52 868 246 24 5 chr4 22361919 22362126 -161926536 - MER58A DNA MER1_type -13 211 1 2038 125 0 27 chr4 22363283 22363578 -161925084 + AluSx SINE Alu 9 295 -17 387 105 40 26 chr4 22364159 22364235 -161924427 + MER116 DNA Mariner 4 80 0 198 167 0 0 chr4 22364709 22364745 -161923917 + CT-rich Low_complexity Low_complexity 2 37 0 1965 154 7 0 chr4 22364914 22365212 -161923450 + AluSx SINE Alu 1 300 -12 220 256 80 51 chr4 22365512 22365649 -161923013 + L3 LINE CR1 974 1114 -463 850 190 36 137 chr4 22365852 22366080 -161922582 - MLT1A1 LTR MaLR -38 327 148 536 115 0 0 chr4 22366080 22366158 -161922504 - MADE1 DNA Mariner -2 78 1 850 190 36 137 chr4 22366158 22366293 -161922369 - MLT1A1 LTR MaLR -217 148 1 1713 198 23 5 chr4 22366710 22367094 -161921568 - MER57A LTR ERV1 -2 401 11 200 369 138 0 chr4 22368097 22368227 -161920435 - L2 LINE L2 0 3313 3166 304 342 61 77 chr4 22368232 22368624 -161920038 - L2 LINE L2 -8 3264 2879 380 292 124 27 chr4 22368653 22368910 -161919752 - L2 LINE L2 -483 2831 2550 2033 229 21 6 chr4 22369276 22369743 -161918919 + MLT1D LTR MaLR 3 476 -29 303 28 0 0 chr4 22369743 22369779 -161918883 + (TG)n Simple_repeat Simple_repeat 1 36 0 5448 123 22 9 chr4 22369803 22370749 -161917913 - L1PA13 LINE L1 0 6163 5210 13955 29 0 0 chr4 22470935 22472806 -161815856 - L1P1 LINE L1 -636 5519 3649 885 119 0 35 chr4 22472806 22472949 -161815713 - AluJb SINE Alu -174 138 1 355 357 42 65 chr4 22473089 22473442 -161815220 + L2 LINE L2 2888 3232 -40 265 170 10 140 chr4 22473500 22473571 -161815091 - MER115 DNA AcHobo 0 693 637 2843 0 0 3 chr4 22473571 22473880 -161814782 + AluYa5 SINE Alu 1 308 -3 265 170 10 140 chr4 22473880 22473908 -161814754 - MER115 DNA AcHobo -56 637 607 7472 188 20 36 chr4 22473923 22474811 -161813851 - L1PB4 LINE L1 -2 6154 5253 216 0 0 0 chr4 22474811 22474835 -161813827 + (TTG)n Simple_repeat Simple_repeat 1 24 0 7472 188 20 36 chr4 22474835 22476675 -161811987 - L1PB4 LINE L1 -903 5253 3462 418 192 75 25 chr4 22476696 22476816 -161811846 - Zaphod DNA AcHobo -169 3862 3737 1730 143 137 16 chr4 22476837 22477158 -161811504 + THE1B LTR MaLR 1 360 -4 45 55 0 0 chr4 22477382 22477455 -161811207 + AT_rich Low_complexity Low_complexity 1 73 0 1410 291 74 13 chr4 22477594 22478054 -161810608 - Zaphod DNA AcHobo -3523 508 21 22 56 0 0 chr4 22478608 22478644 -161810018 + AT_rich Low_complexity Low_complexity 1 36 0 2173 162 44 32 chr4 22479412 22479958 -161808704 - MLT2A2 LTR ERVL 0 554 1 3342 72 26 78 chr4 22479991 22480530 -161808132 - THE1B-int LTR MaLR -1069 511 1 2288 125 23 3 chr4 22480530 22480874 -161807788 - THE1B LTR MaLR 0 364 14 381 93 0 0 chr4 22481039 22481093 -161807569 + (TC)n Simple_repeat Simple_repeat 1 54 0 417 333 116 44 chr4 22482067 22482731 -161805931 + L2 LINE L2 1739 2450 -864 1590 220 65 44 chr4 22484061 22484556 -161804106 - MLT1D LTR MaLR 0 505 1 540 187 53 64 chr4 22484574 22484761 -161803901 - MER53 DNA DNA -1 188 4 2342 80 3 19 chr4 22485042 22485354 -161803308 - AluSg SINE Alu 0 310 4 842 126 0 0 chr4 22485356 22485491 -161803171 - L1 LINE L1 -1493 4653 4519 1768 166 10 0 chr4 22485630 22485932 -161802730 + AluSp SINE Alu 1 305 -8 461 184 26 9 chr4 22486013 22486127 -161802535 - L1MA4 LINE L1 0 6300 6185 229 246 0 0 chr4 22487366 22487400 -161801262 + (TTCA)n Simple_repeat Simple_repeat 2 38 -20 2016 125 0 14 chr4 22487400 22487695 -161800967 - AluSx SINE Alu -21 291 1 229 246 0 0 chr4 22487695 22487717 -161800945 + (TTCA)n Simple_repeat Simple_repeat 37 58 0 668 334 33 66 chr4 22487718 22488260 -161800402 - L2 LINE L2 -1 3312 2779 2544 58 0 6 chr4 22488857 22489170 -161799492 + AluY SINE Alu 1 311 0 253 337 63 34 chr4 22489892 22490067 -161798595 + MIR3 SINE MIR 19 198 -10 242 304 171 32 chr4 22490075 22490233 -161798429 + MIR3 SINE MIR 16 195 -13 23 0 0 0 chr4 22490562 22490585 -161798077 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 8 0 chr4 22490737 22490795 -161797867 + AT_rich Low_complexity Low_complexity 1 22 0 285 340 57 21 chr4 22491482 22491656 -161797006 - MIR SINE MIR -63 145 9 215 360 100 34 chr4 22492421 22492660 -161796002 + L3b LINE CR1 1108 1362 -221 2427 73 0 19 chr4 22494168 22494485 -161794177 + AluY SINE Alu 1 311 0 308 267 88 15 chr4 22494876 22495171 -161793491 + L1M4c LINE L1 1031 1354 -5030 1570 259 36 54 chr4 22495605 22495958 -161792704 + L1ME2 LINE L1 715 1050 -5359 1162 258 24 40 chr4 22495958 22496338 -161792324 + MLT1A2 LTR MaLR 1 374 0 1570 259 36 54 chr4 22496338 22496705 -161791957 + L1ME2 LINE L1 1050 1422 -4987 1958 247 84 38 chr4 22496726 22498055 -161790607 + L1ME2 LINE L1 5028 6414 -10 228 200 20 0 chr4 22498061 22498111 -161790551 + (TA)n Simple_repeat Simple_repeat 2 52 0 183 80 0 0 chr4 22498118 22498143 -161790519 + (TG)n Simple_repeat Simple_repeat 2 26 0 180 176 0 0 chr4 22498863 22498897 -161789765 + T-rich Low_complexity Low_complexity 2 35 0 195 370 43 14 chr4 22500403 22500541 -161788121 - L2 LINE L2 -221 3051 2910 12171 141 38 63 chr4 22500986 22503455 -161785207 + L1PA7 LINE L1 167 2573 -3573 7257 93 3 8 chr4 22503458 22505284 -161783378 + L1PA7 LINE L1 4329 6151 -3 21 57 0 0 chr4 22505284 22505319 -161783343 + AT_rich Low_complexity Low_complexity 1 35 0 287 308 172 40 chr4 22505577 22505804 -161782858 - MIR SINE MIR 0 262 6 292 236 29 132 chr4 22505855 22506029 -161782633 - L2 LINE L2 -226 3046 2891 1095 197 9 0 chr4 22506332 22506555 -161782107 - L1P LINE L1 -1080 5066 4842 * 3181 151 0 26 chr4 22506553 22506618 -161782044 + L1PA15 LINE L1 5519 5584 -581 1934 135 0 11 chr4 22506618 22506936 -161781726 - AluSc SINE Alu 0 315 1 3181 151 0 26 chr4 22506936 22507405 -161781257 + L1PA15 LINE L1 5584 6040 -125 385 92 0 2 chr4 22507405 22507465 -161781197 + Alu SINE Alu 1 52 -250 24 0 0 0 chr4 22507474 22507498 -161781164 + AT_rich Low_complexity Low_complexity 1 24 0 664 208 40 20 chr4 22507715 22507905 -161780757 - MLT1F1 LTR MaLR 0 567 432 * 885 220 53 104 chr4 22507876 22508194 -161780468 - MLT1F1 LTR MaLR -263 304 3 313 240 27 0 chr4 22508199 22508274 -161780388 + MIR SINE MIR 97 173 -89 1741 225 35 72 chr4 22508278 22508793 -161779869 - MLT2B1 LTR ERVL -8 512 17 21 0 0 0 chr4 22509980 22510001 -161778661 + AT_rich Low_complexity Low_complexity 1 21 0 227 274 0 0 chr4 22510062 22510113 -161778549 + L2 LINE L2 3217 3267 -5 772 165 6 98 chr4 22510322 22510486 -161778176 - MER5A DNA MER1_type -40 149 1 181 69 0 35 chr4 22510764 22510793 -161777869 - L3 LINE CR1 -316 1261 1234 219 256 98 24 chr4 22510864 22510946 -161777716 - MIR SINE MIR -154 108 21 2241 105 3 0 chr4 22511678 22511974 -161776688 - AluY SINE Alu -14 297 1 2084 66 2 2 chr4 22512161 22512725 -161775937 - L1PA7 LINE L1 -7 6147 5479 265 374 174 0 chr4 22513538 22513653 -161775009 - L2 LINE L2 -4 3268 3134 1891 253 10 2 chr4 22514139 22514633 -161774029 - L1M4 LINE L1 -1082 5064 4567 2002 130 10 0 chr4 22514944 22515237 -161773425 - AluSx SINE Alu -16 296 1 270 0 0 0 chr4 22515259 22515289 -161773373 + (TTA)n Simple_repeat Simple_repeat 2 31 0 198 365 27 0 chr4 22515490 22515564 -161773098 + L2 LINE L2 3227 3302 -11 213 65 0 0 chr4 22516895 22516926 -161771736 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 374 300 81 19 chr4 22517462 22517622 -161771040 + MIR SINE MIR 59 228 -34 2210 139 28 0 chr4 22518041 22518394 -161770268 - THE1B LTR MaLR -1 363 1 294 362 34 34 chr4 22519319 22519526 -161769136 + MIR3 SINE MIR 1 207 -1 627 286 132 0 chr4 22519792 22520005 -161768657 - MIR SINE MIR -13 249 9 28 29 0 0 chr4 22520048 22520083 -161768579 + AT_rich Low_complexity Low_complexity 1 35 0 367 287 30 10 chr4 22520093 22520194 -161768468 + MIR SINE MIR 49 151 -111 197 197 49 115 chr4 22520260 22520382 -161768280 - L2 LINE L2 -64 3249 3136 237 309 173 31 chr4 22520427 22520618 -161768044 - MLT1G LTR MaLR -94 496 279 276 322 95 19 chr4 22520688 22520963 -161767699 - L2 LINE L2 -252 3061 2714 1020 111 0 0 chr4 22521424 22521577 -161767085 + (TTTC)n Simple_repeat Simple_repeat 1 153 0 569 113 0 10 chr4 22521577 22521674 -161766988 + (TTCC)n Simple_repeat Simple_repeat 3 98 0 496 302 166 0 chr4 22522556 22522761 -161765901 + MIR SINE MIR 12 250 -12 271 298 0 0 chr4 22524258 22524342 -161764320 + (TGAA)n Simple_repeat Simple_repeat 1 84 0 420 143 0 14 chr4 22525385 22525455 -161763207 + MLT1D LTR MaLR 14 82 -423 1419 252 75 23 chr4 22525473 22525914 -161762748 + MLT1D LTR MaLR 38 501 -4 30 27 0 0 chr4 22527547 22527584 -161761078 + AT_rich Low_complexity Low_complexity 1 37 0 1976 80 4 36 chr4 22527928 22528203 -161760459 - AluSp SINE Alu -47 266 1 278 270 60 151 chr4 22528846 22529098 -161759564 - MIR SINE MIR -14 248 20 4576 179 11 6 chr4 22529141 22530441 -161758221 - L1PA16 LINE L1 -152 6014 4710 6494 204 11 12 chr4 22530441 22531881 -161756781 + L1M4 LINE L1 3266 4703 -1443 239 315 0 33 chr4 22532235 22532327 -161756335 - MLT1K LTR MaLR -56 532 444 414 299 40 40 chr4 22532396 22532570 -161756092 - MLT1K LTR MaLR -158 430 257 625 265 20 60 chr4 22532579 22532779 -161755883 + MER82 DNA MER2_type 1 192 -461 193 151 12 47 chr4 22532810 22532896 -161755766 + (TA)n Simple_repeat Simple_repeat 1 83 0 1830 204 46 59 chr4 22532913 22533374 -161755288 + MER82 DNA MER2_type 199 653 0 278 340 19 39 chr4 22533385 22533541 -161755121 - MLT1K LTR MaLR -409 179 27 2022 105 26 36 chr4 22534797 22535101 -161753561 - AluY SINE Alu -10 301 1 224 349 47 9 chr4 22535179 22535285 -161753377 + L2 LINE L2 1903 2012 -1302 244 316 20 31 chr4 22535322 22535420 -161753242 - L2 LINE L2 -18 3295 3199 310 303 73 9 chr4 22535910 22536019 -161752643 + L2 LINE L2 3156 3271 -1 213 309 0 0 chr4 22536103 22536158 -161752504 - MER5A DNA MER1_type 0 189 135 316 291 11 116 chr4 22536337 22536378 -161752284 - MER5B DNA MER1_type -6 172 128 216 0 0 0 chr4 22536378 22536402 -161752260 + (TC)n Simple_repeat Simple_repeat 1 24 0 316 291 11 116 chr4 22536402 22536549 -161752113 - MER5B DNA MER1_type -50 128 4 5073 183 24 19 chr4 22537614 22538657 -161750005 - L1MC1 LINE L1 -13 6320 5273 924 167 9 71 chr4 22538809 22539082 -161749580 - L1M LINE L1 -745 5401 5161 1358 229 8 11 chr4 22539412 22539765 -161748897 + L1M4 LINE L1 4918 5269 -877 931 256 0 31 chr4 22539766 22539993 -161748669 + Tigger5 DNA MER2_type 1 220 -2103 204 231 0 0 chr4 22540218 22540270 -161748392 + GA-rich Low_complexity Low_complexity 1 52 0 536 296 50 34 chr4 22540844 22541141 -161747521 - L1ME3A LINE L1 -216 5954 5653 990 229 89 65 chr4 22542268 22542717 -161745945 + MLT1C LTR MaLR 8 467 0 427 259 69 0 chr4 22542752 22542868 -161745794 + MIR SINE MIR 80 203 -59 23 54 0 0 chr4 22543216 22543253 -161745409 + AT_rich Low_complexity Low_complexity 1 37 0 2179 136 3 0 chr4 22543865 22544175 -161744487 - AluSx SINE Alu -1 311 1 493 278 158 5 chr4 22544411 22544620 -161744042 + MIR SINE MIR 22 262 0 1726 167 43 56 chr4 22544776 22545171 -161743491 + MLT1B LTR MaLR 1 390 0 997 141 19 19 chr4 22545650 22545806 -161742856 - FRAM SINE Alu -20 156 1 798 278 48 0 chr4 22545984 22546193 -161742469 + MIR SINE MIR 28 246 -16 210 283 0 0 chr4 22546242 22546295 -161742367 + L2 LINE L2 3219 3271 -1 451 301 19 62 chr4 22546679 22546888 -161741774 - MIR SINE MIR -6 256 57 1343 267 94 40 chr4 22547683 22548203 -161740459 + MLT1E LTR MaLR 46 593 0 203 264 19 0 chr4 22548234 22548287 -161740375 - L2 LINE L2 -5 3308 3255 203 318 12 24 chr4 22548365 22548450 -161740212 + MIR SINE MIR 152 235 -27 882 121 34 0 chr4 22548870 22549019 -161739643 + L1MA4 LINE L1 6139 6292 -8 1805 159 130 16 chr4 22549912 22550296 -161738366 - MSTA LTR MaLR 0 428 1 484 274 51 0 chr4 22550367 22550484 -161738178 - L2 LINE L2 -4 3309 3187 4659 101 5 0 chr4 22550498 22551151 -161737511 + L1PA13 LINE L1 5505 6160 -3 476 129 0 0 chr4 22551305 22551375 -161737287 + AluSc SINE Alu 1 70 -240 1384 131 0 19 chr4 22551421 22551627 -161737035 + AluSc SINE Alu 71 272 -37 294 87 0 0 chr4 22551627 22551673 -161736989 + (GA)n Simple_repeat Simple_repeat 2 47 0 645 14 0 0 chr4 22551673 22551747 -161736915 + (GGAA)n Simple_repeat Simple_repeat 4 77 0 543 228 99 41 chr4 22551865 22552036 -161736626 + MLT1J2 LTR MaLR 7 187 -263 287 244 71 54 chr4 22552079 22552247 -161736415 + MLT1J1 LTR MaLR 276 446 0 208 254 56 58 chr4 22552384 22552492 -161736170 - MIR3 SINE MIR -5 203 86 195 42 0 0 chr4 22552667 22552691 -161735971 + (TTTTTA)n Simple_repeat Simple_repeat 3 26 0 341 346 82 34 chr4 22553018 22553226 -161735436 + MIR SINE MIR 3 220 -42 5489 41 3 0 chr4 22553226 22553891 -161734771 + L1PA3 LINE L1 5489 6155 0 2204 122 3 3 chr4 22554146 22554457 -161734205 + AluSq SINE Alu 3 313 0 362 133 60 0 chr4 22554495 22554578 -161734084 + L1MA7 LINE L1 6201 6288 -3 351 78 0 0 chr4 22555579 22555630 -161733032 + (CA)n Simple_repeat Simple_repeat 1 51 0 237 284 206 21 chr4 22556326 22556467 -161732195 + MIR3 SINE MIR 24 190 -18 * 262 354 113 54 chr4 22556466 22556706 -161731956 + L2 LINE L2 2998 3251 -21 315 328 144 10 chr4 22556907 22557108 -161731554 - MIR SINE MIR 0 262 35 186 43 0 0 chr4 22557650 22557673 -161730989 + (TA)n Simple_repeat Simple_repeat 1 23 0 216 86 0 0 chr4 22557958 22557993 -161730669 + (T)n Simple_repeat Simple_repeat 1 35 0 200 339 83 28 chr4 22558813 22558993 -161729669 - MIR SINE MIR 0 262 73 711 213 11 55 chr4 22560896 22561079 -161727583 - L1PB4 LINE L1 -2 6154 5980 1654 183 174 11 chr4 22561084 22561445 -161727217 - MSTA LTR MaLR 0 428 9 435 177 0 0 chr4 22561453 22561532 -161727130 - L1PB4 LINE L1 -181 5975 5897 188 250 183 10 chr4 22561680 22561784 -161726878 - MIR SINE MIR -16 246 125 2953 15 0 0 chr4 22561786 22562121 -161726541 - L1PA3 LINE L1 -261 5894 5560 1940 34 0 0 chr4 22562121 22562347 -161726315 + L1PA3 LINE L1 5923 6155 0 1213 220 30 26 chr4 22562399 22562703 -161725959 - MLT1A1 LTR MaLR 0 365 61 480 304 20 14 chr4 22563090 22563238 -161725424 - MIR SINE MIR -7 255 107 1243 245 69 48 chr4 22563246 22563727 -161724935 - MLT1D LTR MaLR -8 497 7 429 149 0 0 chr4 22564373 22564447 -161724215 - L1PB4 LINE L1 -3 6153 6080 207 157 20 20 chr4 22564810 22564861 -161723801 + (TATAA)n Simple_repeat Simple_repeat 4 54 0 1346 331 68 25 chr4 22565459 22566030 -161722632 - MER115 DNA AcHobo -8 685 90 1315 182 88 51 chr4 22566292 22566666 -161721996 - MLT1B LTR MaLR 0 390 3 1593 217 31 14 chr4 22567157 22567516 -161721146 - MLT1A1 LTR MaLR 0 365 1 2134 118 0 10 chr4 22568523 22568827 -161719835 - AluSx SINE Alu -7 305 5 26 64 0 0 chr4 22569139 22569186 -161719476 + AT_rich Low_complexity Low_complexity 1 47 0 2043 205 35 6 chr4 22569401 22569893 -161718769 + L1MC2 LINE L1 5823 6328 -16 * 9054 32 1 0 chr4 22569882 22571736 -161716926 + L1PA4 LINE L1 4284 6150 -5 396 0 0 0 chr4 22571740 22571784 -161716878 + (TA)n Simple_repeat Simple_repeat 1 44 0 1963 141 7 23 chr4 22572678 22572984 -161715678 + AluSq SINE Alu 1 301 -12 22 35 0 0 chr4 22573598 22573627 -161715035 + AT_rich Low_complexity Low_complexity 1 29 0 11682 229 51 40 chr4 22574107 22578557 -161710105 + L1PB4 LINE L1 1 4545 -2313 2077 119 3 0 chr4 22578557 22578850 -161709812 + AluSx SINE Alu 4 297 -15 11682 229 51 40 chr4 22578850 22581190 -161707472 + L1PB4 LINE L1 4545 6857 -1 3814 150 36 15 chr4 22581221 22581487 -161707175 + L1MA4A LINE L1 5361 5620 -683 2029 139 48 17 chr4 22581487 22581840 -161706822 + THE1B LTR MaLR 1 364 0 3814 150 36 15 chr4 22581840 22582286 -161706376 + L1MA4A LINE L1 5620 6088 -215 1042 158 24 57 chr4 22582316 22582562 -161706100 + L1MA4A LINE L1 6053 6290 -13 1411 222 30 6 chr4 22582585 22582919 -161705743 + L1MB3 LINE L1 5587 5928 -255 24 0 0 0 chr4 22583961 22583985 -161704677 + AT_rich Low_complexity Low_complexity 1 24 0 476 266 22 0 chr4 22583985 22584124 -161704538 - L1MA8 LINE L1 -10 6281 6140 5514 115 17 5 chr4 22584305 22584832 -161703830 - L1PA13 LINE L1 0 6163 5644 1623 151 97 31 chr4 22584832 22585184 -161703478 + THE1C LTR MaLR 1 375 0 5514 115 17 5 chr4 22585184 22586269 -161702393 - L1PA13 LINE L1 -519 5644 4555 992 212 5 14 chr4 22586329 22586546 -161702116 - MER20 DNA MER1_type -2 217 3 384 282 0 27 chr4 22587353 22587463 -161701199 - MIR SINE MIR -147 115 9 792 246 94 39 chr4 22587891 22588200 -161700462 - MLT1C LTR MaLR -4 463 138 500 227 46 8 chr4 22588705 22588850 -161699812 - MLT1E2 LTR MaLR -355 150 1 811 274 56 94 chr4 22589123 22589624 -161699038 + Charlie8 DNA MER1_type 29 510 -1907 236 221 0 47 chr4 22590618 22590704 -161697958 + A-rich Low_complexity Low_complexity 2 83 0 21 0 0 0 chr4 22591118 22591139 -161697523 + AT_rich Low_complexity Low_complexity 1 21 0 281 288 104 50 chr4 22591500 22591983 -161696679 + HAL1b LINE L1 66 1663 -826 1532 238 106 64 chr4 22592397 22593239 -161695423 + L1MC5 LINE L1 6650 7526 -435 3315 115 8 14 chr4 22593757 22594271 -161694391 + MER9 LTR ERVK 1 511 0 265 370 46 0 chr4 22594713 22594821 -161693841 - L3 LINE CR1 -454 1123 1011 457 320 171 0 chr4 22594876 22595057 -161693605 - L3 LINE CR1 -757 820 609 29 28 0 0 chr4 22595566 22595602 -161693060 + AT_rich Low_complexity Low_complexity 1 36 0 26 64 0 0 chr4 22595725 22595772 -161692890 + AT_rich Low_complexity Low_complexity 1 47 0 275 335 42 38 chr4 22595779 22596015 -161692647 + MIR SINE MIR 25 261 -1 180 0 0 0 chr4 22596291 22596311 -161692351 + (CAA)n Simple_repeat Simple_repeat 2 21 0 377 313 163 0 chr4 22596940 22597121 -161691541 + MIR SINE MIR 39 247 -15 47 53 0 0 chr4 22597121 22597196 -161691466 + AT_rich Low_complexity Low_complexity 1 75 0 205 143 0 41 chr4 22597215 22597264 -161691398 + (TATAA)n Simple_repeat Simple_repeat 1 47 0 546 327 15 29 chr4 22597291 22597496 -161691166 + MIR SINE MIR 32 233 -29 339 113 0 0 chr4 22597546 22597599 -161691063 + (TCCCC)n Simple_repeat Simple_repeat 5 57 0 1124 149 0 17 chr4 22597615 22597790 -161690872 - AluJb SINE Alu -12 300 129 3333 20 10 0 chr4 22597791 22598185 -161690477 - L1PA3 LINE L1 0 6155 5758 1061 238 102 0 chr4 22598294 22598588 -161690074 + L1MA9 LINE L1 5950 6273 -39 21 36 0 0 chr4 22599122 22599150 -161689512 + AT_rich Low_complexity Low_complexity 1 28 0 1849 130 25 7 chr4 22599454 22599739 -161688923 - AluSg SINE Alu 0 310 21 185 289 186 51 chr4 22600460 22600616 -161688046 + MIR3 SINE MIR 4 180 -28 1893 189 31 3 chr4 22600619 22600974 -161687688 + MLT1A1 LTR MaLR 1 365 0 207 0 0 0 chr4 22602490 22602513 -161686149 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2761 306 147 35 chr4 22602553 22603900 -161684762 + L2 LINE L2 1015 2555 -759 2056 120 3 0 chr4 22603900 22604199 -161684463 + AluSg SINE Alu 1 300 -10 2761 306 147 35 chr4 22604199 22604380 -161684282 + L2 LINE L2 2555 2714 -600 854 271 136 71 chr4 22604410 22604928 -161683734 - MLT1G1 LTR MaLR 0 595 1 485 282 150 29 chr4 22604929 22605212 -161683450 + L2 LINE L2 2752 3066 -247 355 300 7 47 chr4 22605214 22605364 -161683298 + L2 LINE L2 3169 3312 -1 281 396 80 0 chr4 22606733 22606920 -161681742 + L2 LINE L2 2501 2702 -612 274 275 56 56 chr4 22607235 22607377 -161681285 + L2 LINE L2 3171 3312 -1 257 268 72 0 chr4 22607574 22607671 -161680991 + L1MC4 LINE L1 6598 6701 -1341 7093 21 1 0 chr4 22607968 22608794 -161679868 - L1PA3 LINE L1 0 6155 5329 3796 24 0 0 chr4 22608789 22609245 -161679417 + L1PA3 LINE L1 4897 5352 -794 * 331 291 80 34 chr4 22609373 22609548 -161679114 - L2 LINE L2 -15 3298 3116 311 272 142 24 chr4 22610150 22610290 -161678372 + MER58B DNA MER1_type 180 340 -1 220 359 38 50 chr4 22610438 22610597 -161678065 + L2 LINE L2 3085 3241 -31 783 309 75 75 chr4 22612852 22613227 -161675435 - LTR16C LTR ERVL -4 487 113 212 0 36 0 chr4 22613330 22613358 -161675304 + (GA)n Simple_repeat Simple_repeat 2 30 0 191 308 0 0 chr4 22613792 22613844 -161674818 - L2 LINE L2 0 3313 3262 234 0 0 0 chr4 22614544 22614570 -161674092 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 4671 62 11 2 chr4 22614572 22615184 -161673478 - L1PA8 LINE L1 -14 6158 5541 30 27 0 0 chr4 22615355 22615392 -161673270 + AT_rich Low_complexity Low_complexity 1 37 0 578 323 59 47 chr4 22615469 22615856 -161672806 + L3 LINE CR1 556 947 -630 249 33 0 0 chr4 22615862 22615892 -161672770 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 251 250 47 0 chr4 22616133 22616197 -161672465 - L2 LINE L2 0 3313 3247 760 340 135 15 chr4 22616224 22616891 -161671771 - L2 LINE L2 -1241 2073 1327 495 293 84 29 chr4 22616908 22617147 -161671515 - MLT1I LTR MaLR -2 407 156 1787 126 7 11 chr4 22617491 22617768 -161670894 + AluSx SINE Alu 30 305 -7 25 0 0 0 chr4 22619439 22619464 -161669198 + AT_rich Low_complexity Low_complexity 1 25 0 2122 117 3 0 chr4 22619472 22619779 -161668883 + AluSc SINE Alu 1 308 -1 180 0 0 0 chr4 22620911 22620931 -161667731 + (A)n Simple_repeat Simple_repeat 1 20 0 23 40 0 0 chr4 22620956 22620981 -161667681 + AT_rich Low_complexity Low_complexity 1 25 0 262 281 0 0 chr4 22621189 22621253 -161667409 - MIR SINE MIR -35 227 164 6698 28 1 0 chr4 22621295 22622088 -161666574 - L1PA4 LINE L1 -1361 4785 3992 3687 47 0 8 chr4 22622088 22622560 -161666102 + L1PA4 LINE L1 4786 5253 -893 7045 32 2 0 chr4 22622660 22623506 -161665156 + L1PA4 LINE L1 5308 6155 0 190 317 85 24 chr4 22623566 22623648 -161665014 - MIR SINE MIR -175 87 1 1970 135 26 34 chr4 22623649 22624027 -161664635 - THE1C LTR MaLR 0 375 1 21 57 0 0 chr4 22624162 22624197 -161664465 + AT_rich Low_complexity Low_complexity 1 35 0 332 264 11 11 chr4 22624886 22624973 -161663689 - L2 LINE L2 -2 3270 3184 1972 119 9 41 chr4 22625212 22625532 -161663130 + AluSx SINE Alu 1 310 -2 1755 171 0 23 chr4 22625534 22625646 -161663016 + AluJb SINE Alu 1 114 -198 2452 122 14 3 chr4 22625646 22626006 -161662656 + THE1B LTR MaLR 1 364 0 1755 171 0 23 chr4 22626006 22626192 -161662470 + AluJb SINE Alu 114 292 -20 248 230 11 92 chr4 22626196 22626283 -161662379 + MIR SINE MIR 182 261 -1 259 194 194 0 chr4 22626711 22626778 -161661884 + MER65B LTR ERV1 1 80 -451 225 309 72 42 chr4 22627405 22627641 -161661021 + L2 LINE L2 2810 3052 -220 805 284 4 6 chr4 22627694 22627930 -161660732 - MIR SINE MIR 0 262 30 2659 155 27 31 chr4 22728373 22728889 -161559773 - L1MC1 LINE L1 -186 6147 5634 216 0 0 0 chr4 22728963 22728987 -161559675 + (TTTTTG)n Simple_repeat Simple_repeat 3 26 0 2424 80 6 3 chr4 22729804 22730129 -161558533 + MLT2A2 LTR ERVL 1 326 -127 189 0 0 0 chr4 22731148 22731169 -161557493 + (TG)n Simple_repeat Simple_repeat 2 22 0 5639 132 3 3 chr4 22731311 22732398 -161556264 - L1PA14 LINE L1 -7 6154 5069 299 127 0 18 chr4 22733038 22733093 -161555569 - MLT2A1 LTR ERVL -1 443 390 347 192 13 0 chr4 22733093 22733171 -161555491 + (TA)n Simple_repeat Simple_repeat 1 79 0 229 250 60 0 chr4 22733176 22733260 -161555402 + L1MC4 LINE L1 6615 6703 -1339 398 147 29 10 chr4 22733273 22733375 -161555287 + (TA)n Simple_repeat Simple_repeat 2 105 0 540 222 44 72 chr4 22733759 22733939 -161554723 - MER97a DNA MER1_type? -715 179 5 245 329 132 20 chr4 22733950 22734102 -161554560 - MLT1J2 LTR MaLR -12 438 270 180 179 0 0 chr4 22734993 22735032 -161553630 + (TG)n Simple_repeat Simple_repeat 2 40 0 936 211 105 8 chr4 22735070 22735491 -161553171 - MLT1D LTR MaLR -18 487 1 198 0 0 0 chr4 22735506 22735528 -161553134 + (A)n Simple_repeat Simple_repeat 1 22 0 198 173 96 0 chr4 22735868 22735920 -161552742 - MIR SINE MIR -99 163 107 1044 211 98 92 chr4 22736970 22737417 -161551245 + MER66A LTR ERV1 59 467 -11 306 311 30 22 chr4 22737635 22737792 -161550870 + L1ME LINE L1 5579 5739 -382 2112 115 30 7 chr4 22737810 22738115 -161550547 - AluSx SINE Alu 0 312 1 28 29 0 0 chr4 22738262 22738297 -161550365 + AT_rich Low_complexity Low_complexity 1 35 0 441 319 136 8 chr4 22738695 22738930 -161549732 + MLT1K LTR MaLR 7 271 -317 1277 233 31 85 chr4 22739101 22739641 -161549021 - MER21B LTR ERV1 -56 807 384 238 247 59 71 chr4 22739649 22739734 -161548928 - MER21B LTR ERV1 -675 188 105 5222 111 42 1 chr4 22739764 22740542 -161548120 - L1PA13 LINE L1 -3 6160 5351 437 145 66 0 chr4 22740532 22740608 -161548054 - L1PA13 LINE L1 -2454 3692 3612 * 2252 49 59 0 chr4 22742537 22742824 -161545838 - AluY SINE Alu -7 304 1 236 324 59 47 chr4 22743353 22743523 -161545139 - MIR SINE MIR -32 230 59 325 269 41 112 chr4 22743636 22743904 -161544758 - MIR SINE MIR -1 261 13 467 341 16 6 chr4 22744261 22744443 -161544219 + MIR3 SINE MIR 12 195 -13 446 286 8 8 chr4 22745218 22745337 -161543325 - L2 LINE L2 -5 3308 3190 351 0 0 0 chr4 22745384 22745423 -161543239 + (TG)n Simple_repeat Simple_repeat 2 40 0 485 311 70 18 chr4 22745583 22745811 -161542851 + L2 LINE L2 2738 2977 -337 294 261 45 27 chr4 22746223 22746334 -161542328 + L3 LINE CR1 1379 1491 -86 1488 211 195 10 chr4 22746544 22746582 -161542080 - MLT1C LTR MaLR 0 467 437 18071 28 0 0 chr4 22746582 22749505 -161539157 + L1PA2 LINE L1 3232 6155 0 1488 211 195 10 chr4 22749505 22749673 -161538989 - MLT1C LTR MaLR -30 437 301 297 0 0 0 chr4 22749673 22749706 -161538956 + (TG)n Simple_repeat Simple_repeat 2 34 0 1488 211 195 10 chr4 22749706 22749892 -161538770 - MLT1C LTR MaLR -166 301 1 369 0 0 0 chr4 22750841 22750882 -161537780 + (TA)n Simple_repeat Simple_repeat 1 41 0 396 332 62 14 chr4 22751493 22751704 -161536958 - MLT1I LTR MaLR -188 221 1 243 0 0 0 chr4 22751950 22751977 -161536685 + (TC)n Simple_repeat Simple_repeat 2 28 0 270 0 0 0 chr4 22751979 22752009 -161536653 + (CA)n Simple_repeat Simple_repeat 2 31 0 457 143 31 10 chr4 22752009 22752107 -161536555 + CT-rich Low_complexity Low_complexity 3 102 0 22 35 0 0 chr4 22752317 22752346 -161536316 + AT_rich Low_complexity Low_complexity 1 29 0 1987 121 10 0 chr4 22753343 22753632 -161535030 - AluSx SINE Alu -20 292 1 278 412 38 0 chr4 22754240 22754371 -161534291 + L2 LINE L2 3137 3272 0 206 359 76 89 chr4 22754705 22755098 -161533564 + L2 LINE L2 2840 3227 -45 26 30 0 0 chr4 22755749 22755782 -161532880 + AT_rich Low_complexity Low_complexity 1 33 0 1065 215 79 21 chr4 22755818 22756158 -161532504 - L1MB7 LINE L1 -2 6182 5823 306 175 0 0 chr4 22757059 22757116 -161531546 - L1P4 LINE L1 -444 5722 5666 * 1274 169 16 4 chr4 22757114 22757363 -161531299 + L1PA16 LINE L1 5759 6010 -156 433 312 38 0 chr4 22757532 22757689 -161530973 - L2 LINE L2 -444 2870 2708 * 487 301 48 5 chr4 22757685 22757871 -161530791 - MIR SINE MIR -25 237 44 184 218 13 26 chr4 22758068 22758146 -161530516 + CT-rich Low_complexity Low_complexity 1 77 0 222 267 27 13 chr4 22758334 22758409 -161530253 + MER5A DNA MER1_type 113 188 -1 82 44 0 7 chr4 22760662 22760745 -161527917 + AT_rich Low_complexity Low_complexity 1 84 -50 180 0 0 0 chr4 22760745 22760765 -161527897 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 82 44 0 7 chr4 22760765 22760816 -161527846 + AT_rich Low_complexity Low_complexity 84 134 0 25 51 0 0 chr4 22760981 22761020 -161527642 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr4 22761113 22761136 -161527526 + AT_rich Low_complexity Low_complexity 1 23 0 804 188 7 0 chr4 22761250 22761399 -161527263 - MLT1D LTR MaLR -3 502 353 29733 34 5 1 chr4 22761403 22765798 -161522864 - L1PA3 LINE L1 0 6155 1741 944 231 63 72 chr4 22765798 22766161 -161522501 - MLT1D LTR MaLR -145 360 1 424 256 8 25 chr4 22766961 22767082 -161521580 + MLT1H LTR MaLR 125 243 -306 410 365 90 28 chr4 22767327 22767825 -161520837 + L2 LINE L2 2440 2968 -346 291 85 0 0 chr4 22768118 22768165 -161520497 + (TA)n Simple_repeat Simple_repeat 1 47 0 2394 81 0 0 chr4 22768165 22768461 -161520201 - AluSc SINE Alu -13 296 1 215 169 39 13 chr4 22769306 22769383 -161519279 + (TA)n Simple_repeat Simple_repeat 1 79 0 624 286 5 10 chr4 22769987 22770190 -161518472 + MER105 DNA DNA 1 202 -2 365 233 133 25 chr4 22770835 22770955 -161517707 + MIR SINE MIR 74 206 -56 187 394 64 0 chr4 22771105 22771199 -161517463 - MIR SINE MIR -158 104 5 627 285 47 5 chr4 22771406 22771620 -161517042 - L3b LINE CR1 -135 1448 1226 2087 100 55 0 chr4 22772705 22772995 -161515667 + AluSp SINE Alu 1 306 -7 230 380 50 0 chr4 22773109 22773209 -161515453 + L3 LINE CR1 1019 1123 -454 21 36 0 0 chr4 22773398 22773426 -161515236 + AT_rich Low_complexity Low_complexity 1 28 0 429 293 55 114 chr4 22774091 22774633 -161514029 + L2 LINE L2 2804 3313 0 1146 343 147 23 chr4 22775542 22776812 -161511850 - L2 LINE L2 -4 3309 1869 281 318 17 29 chr4 22776819 22776992 -161511670 + HAL1 LINE L1 1385 1555 -952 2860 214 65 3 chr4 22777046 22777719 -161510943 + L1MB2 LINE L1 5447 6161 -10 762 203 140 0 chr4 22777738 22777960 -161510702 - MER33 DNA MER1_type -67 257 5 217 339 58 37 chr4 22778170 22778412 -161510250 - L2 LINE L2 -1838 1476 1230 259 160 0 20 chr4 22778417 22778467 -161510195 + L2 LINE L2 3265 3313 0 563 268 21 0 chr4 22778522 22778664 -161509998 + MIR SINE MIR 97 241 -21 299 289 18 0 chr4 22778711 22778825 -161509837 - MER20B DNA MER1_type -1 782 667 22 0 0 0 chr4 22779106 22779128 -161509534 + AT_rich Low_complexity Low_complexity 1 22 0 256 259 0 0 chr4 22779351 22779409 -161509253 + MER94 DNA DNA 75 132 -2 659 197 7 7 chr4 22779807 22779959 -161508703 - MER53 DNA DNA 0 189 38 783 222 72 25 chr4 22780182 22780324 -161508338 - Charlie1 DNA MER1_type -5 2756 2622 2294 81 3 0 chr4 22780324 22780620 -161508042 + AluY SINE Alu 1 297 -14 472 24 61 0 chr4 22780621 22780703 -161507959 + (TA)n Simple_repeat Simple_repeat 1 87 0 783 222 72 25 chr4 22780703 22780837 -161507825 - Charlie1 DNA MER1_type -138 2623 2465 418 204 31 130 chr4 22780981 22781080 -161507582 + MLT1B LTR MaLR 230 308 -82 1927 126 0 63 chr4 22781080 22781414 -161507248 + AluSq SINE Alu 1 313 0 418 204 31 130 chr4 22781414 22781465 -161507197 + MLT1B LTR MaLR 308 364 -26 2394 162 91 29 chr4 22781465 22781991 -161506671 + MER34B LTR ERV1 1 559 -6 1065 138 110 0 chr4 22782051 22782273 -161506389 - L1MB2 LINE L1 -195 5976 5729 252 296 12 12 chr4 22782291 22782372 -161506290 - Charlie1 DNA MER1_type -2679 82 2 233 287 23 93 chr4 22782436 22782565 -161506097 - MIR SINE MIR -26 236 117 2106 93 0 7 chr4 22783196 22783476 -161505186 - AluY SINE Alu -14 297 20 183 286 0 24 chr4 22783905 22783947 -161504715 - L2 LINE L2 -33 3239 3199 260 241 276 0 chr4 22783947 22784034 -161504628 + MER34 LTR ERV1 1 111 -431 * 1132 214 49 106 chr4 22784006 22784497 -161504165 + MER39 LTR ERV1 243 705 -2 232 294 73 0 chr4 22784509 22784577 -161504085 - MIR SINE MIR -187 75 3 777 253 52 13 chr4 22785572 22785805 -161502857 + MIR SINE MIR 21 262 0 307 206 0 22 chr4 22786597 22786689 -161501973 + (TA)n Simple_repeat Simple_repeat 2 91 0 24 32 0 0 chr4 22786896 22786927 -161501735 + AT_rich Low_complexity Low_complexity 1 31 0 2147 78 35 0 chr4 22788344 22788665 -161499997 - AluY SINE Alu 0 331 1 201 189 0 38 chr4 22788665 22788680 -161499982 + T-rich Low_complexity Low_complexity 5 180 0 2283 123 123 5 chr4 22788784 22789167 -161499495 - MSTA LTR MaLR 0 428 1 30 0 0 0 chr4 22790757 22790787 -161497875 + AT_rich Low_complexity Low_complexity 1 30 0 673 111 0 0 chr4 22792498 22792597 -161496065 - AluS SINE Alu -214 99 1 25 0 0 0 chr4 22792729 22792754 -161495908 + AT_rich Low_complexity Low_complexity 1 25 0 489 189 38 0 chr4 22794345 22794477 -161494185 + CT-rich Low_complexity Low_complexity 2 138 0 1583 200 7 10 chr4 22794488 22794783 -161493879 - AluJo SINE Alu -16 296 3 754 181 16 11 chr4 22794909 22795003 -161493659 - MER53 DNA DNA -2 187 90 393 95 0 0 chr4 22795003 22795066 -161493596 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 754 181 16 11 chr4 22795066 22795153 -161493509 - MER53 DNA DNA -99 90 5 22 35 0 0 chr4 22795731 22795760 -161492902 + AT_rich Low_complexity Low_complexity 1 29 0 2047 248 58 19 chr4 22796289 22796822 -161491840 - MLT2B3 LTR ERVL 0 554 1 189 0 0 0 chr4 22797162 22797183 -161491479 + (CA)n Simple_repeat Simple_repeat 2 22 0 1791 191 21 0 chr4 22797183 22797518 -161491144 + MER7A DNA MER2_type 3 342 -4 3840 139 28 51 chr4 22797601 22798111 -161490551 - MER4D LTR ERV1 0 903 414 2171 123 0 7 chr4 22798111 22798420 -161490242 + AluSq SINE Alu 1 307 -6 3840 139 28 51 chr4 22798420 22798633 -161490029 - MER4D LTR ERV1 -489 414 197 446 240 20 20 chr4 22798633 22798733 -161489929 - MER41E LTR ERV1 0 512 413 5020 163 51 12 chr4 22798833 22800367 -161488295 - L1MA5 LINE L1 -54 6948 5368 392 169 0 0 chr4 22800508 22800579 -161488083 + L1PA16 LINE L1 6093 6163 -3 393 269 48 35 chr4 22800793 22800938 -161487724 + MIR SINE MIR 84 230 -32 467 357 51 0 chr4 22801060 22801256 -161487406 + MIR SINE MIR 57 262 0 261 114 0 23 chr4 22802564 22802608 -161486054 + MADE1 DNA Mariner 1 43 -37 363 23 0 0 chr4 22802673 22802717 -161485945 + (TG)n Simple_repeat Simple_repeat 2 45 0 414 236 94 31 chr4 22802766 22802893 -161485769 - L2 LINE L2 0 3313 3179 2644 189 68 41 chr4 22803117 22803825 -161484837 - L1MA5 LINE L1 -1510 5338 4612 2492 247 59 23 chr4 22803818 22804787 -161483875 - L1MA5 LINE L1 -2756 4092 3089 * 1678 211 6 0 chr4 22804947 22805307 -161483355 - L1MA5 LINE L1 -3975 2874 2513 * 2391 254 33 53 chr4 22805301 22805424 -161483238 - L1MA5 LINE L1 -4797 2052 1928 2028 122 6 6 chr4 22805424 22805736 -161482926 - AluSx SINE Alu 0 312 1 2391 254 33 53 chr4 22805736 22806460 -161482202 - L1MA5 LINE L1 -4921 1928 1222 347 297 88 0 chr4 22806657 22806805 -161481857 - MIR SINE MIR -28 234 74 284 274 66 28 chr4 22806908 22807014 -161481648 - MLT1H1 LTR MaLR 0 555 446 271 273 23 0 chr4 22807089 22807177 -161481485 + CT-rich Low_complexity Low_complexity 5 94 0 268 314 84 52 chr4 22807262 22807453 -161481209 + L2 LINE L2 2984 3180 -133 482 314 8 0 chr4 22807554 22807678 -161480984 + L2 LINE L2 3188 3312 -1 21 0 0 0 chr4 22807717 22807738 -161480924 + AT_rich Low_complexity Low_complexity 1 21 0 458 300 85 39 chr4 22807782 22808065 -161480597 - L1MA9 LINE L1 -30 6261 5966 25 65 0 0 chr4 22808334 22808380 -161480282 + AT_rich Low_complexity Low_complexity 1 46 0 2017 147 42 20 chr4 22809153 22809507 -161479155 + THE1B LTR MaLR 1 362 -2 438 20 0 0 chr4 22810313 22810364 -161478298 + (TAGA)n Simple_repeat Simple_repeat 3 53 0 21 0 0 0 chr4 22810443 22810464 -161478198 + AT_rich Low_complexity Low_complexity 1 21 0 184 381 124 9 chr4 22810593 22810698 -161477964 - MIR3 SINE MIR -49 159 43 1130 322 94 13 chr4 22811668 22812479 -161476183 + L2 LINE L2 2448 3311 -2 265 111 0 0 chr4 22813164 22813200 -161475462 + U2 snRNA snRNA 1 36 -152 391 333 98 0 chr4 22813250 22813373 -161475289 + L2 LINE L2 3134 3268 -4 528 297 26 31 chr4 22813654 22813846 -161474816 - MIR SINE MIR -57 205 15 223 295 114 9 chr4 22814381 22814486 -161474176 - MIR3 SINE MIR -11 197 82 325 334 91 85 chr4 22814571 22815217 -161473445 - L2 LINE L2 -8 3264 2609 263 353 60 37 chr4 22816435 22816735 -161471927 - L2 LINE L2 -2335 979 673 4395 180 15 15 chr4 22817088 22817951 -161470711 - MER6 DNA MER2_type -2 863 1 1398 250 32 20 chr4 22818000 22818408 -161470254 - LTR52 LTR ERVL -5 416 4 332 230 0 70 chr4 22819714 22819865 -161468797 + MIR SINE MIR 16 191 -71 202 361 67 0 chr4 22820572 22820691 -161467971 - L2 LINE L2 0 3272 3146 2202 170 73 25 chr4 22821000 22821038 -161467624 - MLT2A2 LTR ERVL 0 554 519 279 0 0 0 chr4 22821038 22821069 -161467593 + (TA)n Simple_repeat Simple_repeat 2 32 0 * 405 0 0 0 chr4 22821068 22821113 -161467549 + (CA)n Simple_repeat Simple_repeat 2 46 0 2202 170 73 25 chr4 22821069 22821583 -161467079 - MLT2A2 LTR ERVL -35 519 1 681 288 75 12 chr4 22821780 22822020 -161466642 + MIR SINE MIR 2 256 -6 1904 98 26 4 chr4 22822166 22822430 -161466232 - AluSp SINE Alu -30 283 14 191 302 47 66 chr4 22822552 22822658 -161466004 + MER5B DNA MER1_type 3 106 -72 21 0 0 0 chr4 22822852 22822873 -161465789 + AT_rich Low_complexity Low_complexity 1 21 0 536 341 45 8 chr4 22825352 22825598 -161463064 + MIR SINE MIR 7 261 -1 1906 127 3 48 chr4 22825768 22826083 -161462579 - AluSc SINE Alu -8 301 1 225 397 26 17 chr4 22826312 22826428 -161462234 - MIR SINE MIR -114 148 32 255 304 101 40 chr4 22827533 22827681 -161460981 + MIR3 SINE MIR 40 196 -12 3884 258 70 37 chr4 22827813 22829900 -161458762 - L1MB8 LINE L1 0 6178 3989 1918 114 34 20 chr4 22829900 22830198 -161458464 + AluSx SINE Alu 11 312 0 3884 258 70 37 chr4 22830198 22830708 -161457954 - L1MB8 LINE L1 -2189 3989 3497 587 163 10 0 chr4 22830998 22831096 -161457566 - Tigger1 DNA MER2_type 0 2418 2320 367 133 0 0 chr4 22831096 22831156 -161457506 - Tigger1 DNA MER2_type -246 2172 2113 10676 162 24 13 chr4 22831190 22833100 -161455562 - Tigger1 DNA MER2_type -486 1932 1 313 293 144 29 chr4 22833536 22833710 -161454952 + MLT1I LTR MaLR 93 286 -123 242 368 17 8 chr4 22834664 22834781 -161453881 + L2 LINE L2 3139 3256 -16 1615 187 21 9 chr4 22835252 22835578 -161453084 - L1MC1 LINE L1 0 6333 6004 4801 232 66 38 chr4 22835581 22838568 -161450094 - L1MD1 LINE L1 0 6242 3175 648 260 35 111 chr4 22838572 22838924 -161449738 - L1MC5 LINE L1 -922 7039 6728 2108 125 0 0 chr4 22838924 22839221 -161449441 + AluSc SINE Alu 6 302 -7 648 260 35 111 chr4 22839221 22839326 -161449336 - L1MC5 LINE L1 -1233 6728 6617 413 289 26 26 chr4 22839525 22839715 -161448947 - L1MC4 LINE L1 -155 7887 7698 246 62 0 0 chr4 22839715 22839747 -161448915 + (TA)n Simple_repeat Simple_repeat 2 33 0 205 296 29 93 chr4 22839888 22840060 -161448602 + L2 LINE L2 2325 2485 -829 2041 131 60 20 chr4 22840926 22841276 -161447386 - THE1B LTR MaLR 0 364 1 226 323 0 11 chr4 22841282 22841375 -161447287 + A-rich Low_complexity Low_complexity 2 93 0 180 316 95 11 chr4 22841777 22841872 -161446790 - L3 LINE CR1 -14 1563 1461 2555 247 110 52 chr4 22841898 22843514 -161445148 + L1MCb LINE L1 129 1954 -4610 1811 188 17 12 chr4 22843514 22843859 -161444803 + MER7A DNA MER2_type 2 346 0 2555 247 110 52 chr4 22843859 22844418 -161444244 + L1MCb LINE L1 1954 2479 -4085 652 292 12 0 chr4 22844452 22844620 -161444042 + MER58A DNA MER1_type 42 211 -13 1975 261 196 15 chr4 22844645 22845561 -161443101 - L1MC4 LINE L1 -303 7739 6658 21 36 0 0 chr4 22845632 22845660 -161443002 + AT_rich Low_complexity Low_complexity 1 28 0 255 267 85 34 chr4 22845661 22845798 -161442864 - L1MC4a LINE L1 -1215 6593 6537 524 150 0 10 chr4 22845815 22845915 -161442747 + (TG)n Simple_repeat Simple_repeat 2 100 0 507 240 12 18 chr4 22845920 22846091 -161442571 - L1MC4a LINE L1 -1294 6514 6345 820 268 63 26 chr4 22846124 22846475 -161442187 - L1ME2 LINE L1 -44 6120 5757 203 378 77 35 chr4 22849534 22849677 -161438985 + L2 LINE L2 3122 3270 -2 2731 13 0 0 chr4 22850202 22850505 -161438157 - AluYa5 SINE Alu -8 303 1 27 49 0 0 chr4 22850959 22851000 -161437662 + AT_rich Low_complexity Low_complexity 1 41 0 1187 199 109 55 chr4 22851148 22851605 -161437057 + LTR54B LTR ERV1 1 482 -16 410 304 47 26 chr4 22852895 22853086 -161435576 - L2 LINE L2 -2 3311 3117 351 261 65 11 chr4 22853321 22853413 -161435249 - MIR SINE MIR -77 185 89 3456 118 77 2 chr4 22853901 22854458 -161434204 + L1PA14 LINE L1 2258 2856 -4725 759 102 4 6 chr4 22854462 22854709 -161433953 + AluSx SINE Alu 4 299 -11 17005 197 16 14 chr4 22854714 22859442 -161429220 + L1PA14 LINE L1 2868 7599 0 25 51 0 0 chr4 22859442 22859481 -161429181 + AT_rich Low_complexity Low_complexity 1 39 0 1982 106 0 7 chr4 22859883 22860338 -161428324 - AluSc SINE Alu 0 453 1 26 0 0 0 chr4 22860396 22860422 -161428240 + AT_rich Low_complexity Low_complexity 1 26 0 313 287 23 23 chr4 22860767 22860854 -161427808 + L2 LINE L2 3170 3256 -16 294 345 18 30 chr4 22861135 22861300 -161427362 - MIR SINE MIR -75 187 25 198 321 90 8 chr4 22861846 22861980 -161426682 + MIR SINE MIR 118 262 0 220 374 10 10 chr4 22862017 22862116 -161426546 - MIR SINE MIR -110 152 54 203 272 256 24 chr4 22862349 22862474 -161426188 - MIR SINE MIR -2 260 107 21 36 0 0 chr4 22863026 22863054 -161425608 + AT_rich Low_complexity Low_complexity 1 28 0 387 379 59 12 chr4 22863553 22863722 -161424940 + MER91A DNA MER1_type 1 177 -19 1351 244 148 23 chr4 22863740 22864179 -161424483 - MLT1D LTR MaLR 0 505 12 237 65 0 0 chr4 22864644 22864675 -161423987 + (TTA)n Simple_repeat Simple_repeat 3 33 0 6728 61 8 6 chr4 22864675 22866320 -161422342 - L1PA7 LINE L1 -18 6136 4493 1673 180 131 13 chr4 22866519 22866902 -161421760 + MSTA LTR MaLR 1 428 0 251 161 128 0 chr4 22866911 22866973 -161421689 + AluS SINE Alu 1 57 -243 4553 163 28 9 chr4 22866975 22867766 -161420896 + MSTA-int LTR MaLR 775 1580 0 1921 162 126 5 chr4 22867766 22868148 -161420514 + MSTA LTR MaLR 1 428 0 258 364 23 0 chr4 22868325 22868413 -161420249 + L2 LINE L2 2573 2662 -652 278 386 52 0 chr4 22868831 22868984 -161419678 + L2 LINE L2 3136 3296 -17 578 308 7 0 chr4 22869035 22869181 -161419481 + MIR SINE MIR 10 156 -106 397 304 9 0 chr4 22869217 22869329 -161419333 + MLT1E LTR MaLR 51 163 -430 1707 253 31 46 chr4 22869330 22869346 -161419316 + MLT1E LTR MaLR 119 134 -459 2474 108 78 8 chr4 22869346 22869746 -161418916 + MSTA LTR MaLR 1 428 0 1707 253 31 46 chr4 22869746 22870208 -161418454 + MLT1E LTR MaLR 134 590 -3 231 288 30 0 chr4 22870217 22870283 -161418379 + MIR SINE MIR 157 224 -38 31 44 0 0 chr4 22870599 22870644 -161418018 + AT_rich Low_complexity Low_complexity 1 45 0 29 47 0 0 chr4 22871127 22871170 -161417492 + AT_rich Low_complexity Low_complexity 1 43 0 1964 130 20 0 chr4 22871507 22871807 -161416855 - AluSx SINE Alu 0 312 7 2295 201 10 0 chr4 22872645 22873052 -161415610 - MSTB LTR MaLR -13 413 3 1627 97 0 4 chr4 22873093 22873319 -161415343 + AluY SINE Alu 82 306 -5 242 289 10 10 chr4 22873892 22873989 -161414673 - MLT1J1 LTR MaLR -4 442 346 1868 152 3 14 chr4 22874040 22874337 -161414325 + AluJb SINE Alu 1 294 -18 1745 181 62 41 chr4 22875092 22875511 -161413151 - MLT2C2 LTR ERVL -32 432 5 296 323 79 8 chr4 22875531 22875658 -161413004 + MIR SINE MIR 104 239 -23 5108 180 26 8 chr4 22876495 22878199 -161410463 - L1PB4 LINE L1 -4 6152 4415 417 295 91 54 chr4 22878829 22879070 -161409592 - MIR SINE MIR 0 262 13 267 316 76 0 chr4 22879943 22880022 -161408640 + L2 LINE L2 3136 3220 -52 196 349 75 0 chr4 22880757 22880863 -161407799 + MIR SINE MIR 115 228 -34 227 255 0 0 chr4 22881517 22881568 -161407094 + (TG)n Simple_repeat Simple_repeat 1 51 0 2216 88 7 39 chr4 22882252 22882559 -161406103 - AluSg SINE Alu -13 297 1 382 289 72 48 chr4 22882579 22882828 -161405834 - L2 LINE L2 -74 3239 2985 697 271 201 23 chr4 22882867 22883442 -161405220 - L2 LINE L2 -240 3073 2401 401 159 28 19 chr4 22884003 22884110 -161404552 + GA-rich Low_complexity Low_complexity 2 109 0 1514 164 14 0 chr4 22884134 22884415 -161404247 + L1MA5 LINE L1 6010 6294 -6 266 216 155 0 chr4 22884439 22884536 -161404126 - MLT1L LTR MaLR -65 550 439 305 354 0 0 chr4 22884812 22884956 -161403706 - L1ME3A LINE L1 0 6170 6027 192 163 143 41 chr4 22885510 22885559 -161403103 + MIR SINE MIR 120 173 -89 344 355 41 17 chr4 22886239 22886411 -161402251 - MIR SINE MIR -81 181 6 198 103 0 0 chr4 22887791 22887820 -161400842 + (A)n Simple_repeat Simple_repeat 1 29 0 253 305 24 0 chr4 22887843 22887925 -161400737 + L2 LINE L2 3225 3308 -5 5323 142 58 45 chr4 22888575 22889106 -161399556 - Tigger3b DNA MER2_type -1797 1231 708 1715 170 10 3 chr4 22889106 22889400 -161399262 - AluJb SINE Alu -16 296 1 5323 142 58 45 chr4 22889400 22889944 -161398718 - Tigger3b DNA MER2_type -2320 708 142 276 285 106 22 chr4 22890233 22890412 -161398250 - MLT1H1 LTR MaLR 0 555 362 1114 252 78 20 chr4 22890533 22890603 -161398059 + MLT1A1 LTR MaLR 1 65 -300 1116 206 93 44 chr4 22890603 22890924 -161397738 - MER44D DNA MER2_type -2 607 1 1114 252 78 20 chr4 22890924 22891198 -161397464 + MLT1A1 LTR MaLR 65 365 0 268 292 33 58 chr4 22891237 22891357 -161397305 - MLT1H1 LTR MaLR -407 148 32 502 292 173 7 chr4 22891744 22892078 -161396584 - MLT1G1 LTR MaLR -1 594 176 2638 108 3 16 chr4 22892226 22892392 -161396270 - THE1B LTR MaLR 0 364 197 6473 112 41 17 chr4 22892392 22893438 -161395224 + MER11C LTR ERVK 1 1071 0 2638 108 3 16 chr4 22893438 22893640 -161395022 - THE1B LTR MaLR -167 197 1 276 354 15 8 chr4 22894407 22894537 -161394125 + MIR3 SINE MIR 77 207 -1 1747 179 0 29 chr4 22895262 22895570 -161393092 + AluJb SINE Alu 1 299 -13 23 0 0 0 chr4 22895962 22895985 -161392677 + AT_rich Low_complexity Low_complexity 1 23 0 1252 314 73 34 chr4 22896196 22896810 -161391852 + L1M2c LINE L1 797 1434 -6132 2711 78 3 8 chr4 22897059 22897416 -161391246 - THE1A LTR MaLR 0 355 1 10410 101 62 1 chr4 22897416 22898906 -161389756 - THE1A-int LTR MaLR 0 1580 1 2750 79 3 0 chr4 22898906 22899260 -161389402 - THE1A LTR MaLR 0 355 1 828 204 80 32 chr4 22899513 22899826 -161388836 + L1M2c LINE L1 2374 2701 -4865 186 43 0 0 chr4 22900154 22900177 -161388485 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 3591 233 43 36 chr4 22900213 22900971 -161387691 + L1MA6 LINE L1 2427 3178 -4387 1602 145 69 4 chr4 22900971 22901233 -161387429 + AluSq SINE Alu 33 311 -2 3591 233 43 36 chr4 22901233 22902238 -161386424 + L1MA6 LINE L1 3178 4219 -3346 2228 78 4 0 chr4 22902238 22902568 -161386094 - AluY SINE Alu 0 331 1 3591 233 43 36 chr4 22902568 22903034 -161385628 + L1MA6 LINE L1 4219 4680 -2885 4113 181 86 11 chr4 22903037 22904588 -161384074 + L1MA6 LINE L1 5728 7393 -326 512 192 33 0 chr4 22904603 22904723 -161383939 + L1MA6 LINE L1 7593 7716 -3 192 143 0 0 chr4 22905212 22905254 -161383408 + (TC)n Simple_repeat Simple_repeat 2 43 0 201 226 97 0 chr4 22905463 22905525 -161383137 + MIR SINE MIR 81 148 -114 394 298 7 7 chr4 22905973 22906114 -161382548 - MARNA DNA Mariner -205 381 241 182 342 13 26 chr4 22907131 22907207 -161381455 - MIR SINE MIR -20 242 168 21 0 0 0 chr4 22907223 22907244 -161381418 + AT_rich Low_complexity Low_complexity 1 21 0 358 202 75 11 chr4 22907858 22907952 -161380710 + L1MC1 LINE L1 6234 6333 0 4438 219 16 20 chr4 22908005 22908049 -161380613 - L1 LINE L1 -871 5275 5232 2598 154 9 2 chr4 22908049 22908471 -161380191 + MSTA LTR MaLR 4 428 0 4438 219 16 20 chr4 22908471 22909581 -161379081 - L1 LINE L1 -914 5232 4125 4132 196 36 24 chr4 22909587 22910525 -161378137 + L1MA10 LINE L1 5282 6231 -103 469 282 79 26 chr4 22910524 22910751 -161377911 + L1MD1 LINE L1 5607 5845 -397 * 206 233 0 0 chr4 22910751 22910794 -161377868 + (AAATG)n Simple_repeat Simple_repeat 2 44 0 723 308 75 39 chr4 22911241 22911653 -161377009 - MLT1J2 LTR MaLR -22 428 2 255 329 0 13 chr4 22912881 22912957 -161375705 + MLT1K LTR MaLR 190 264 -324 495 73 0 0 chr4 22913221 22913289 -161375373 + (TG)n Simple_repeat Simple_repeat 1 68 0 332 268 24 16 chr4 22914496 22914619 -161374043 + (TA)n Simple_repeat Simple_repeat 2 125 0 340 143 18 0 chr4 22914749 22914805 -161373857 - Alu SINE Alu -11 291 235 191 319 167 29 chr4 22914865 22915003 -161373659 + MIR SINE MIR 60 216 -46 340 254 9 70 chr4 22915410 22915524 -161373138 - L2 LINE L2 -3 3310 3204 487 299 32 6 chr4 22915614 22915771 -161372891 - MER97c DNA MER1_type? -911 179 19 2596 225 8 8 chr4 22917290 22917938 -161370724 - L1MB7 LINE L1 -19 6165 5518 4825 213 39 71 chr4 22917947 22919901 -161368761 - L1MB7 LINE L1 -719 5459 3587 1381 229 44 7 chr4 22920161 22920616 -161368046 + L1M4 LINE L1 2791 3262 -2884 211 392 30 6 chr4 22921119 22921285 -161367377 + MIR SINE MIR 90 259 -3 998 198 0 34 chr4 22922050 22922257 -161366405 + MER3 DNA MER1_type 3 202 -7 11503 104 13 2 chr4 22922437 22922869 -161365793 + L1P LINE L1 3072 3498 -2648 216 0 0 0 chr4 22922869 22922893 -161365769 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 11503 104 13 2 chr4 22922893 22924195 -161364467 + L1P LINE L1 3498 4826 -1320 180 85 106 64 chr4 22924452 22924499 -161364163 - L3b LINE CR1 -330 1253 1205 522 214 71 0 chr4 22924513 22924639 -161364023 - MER5A DNA MER1_type -3 186 52 276 30 0 0 chr4 22924948 22924981 -161363681 + (TA)n Simple_repeat Simple_repeat 1 33 0 646 215 67 99 chr4 22925021 22925305 -161363357 - L1MC4 LINE L1 -365 7677 7403 2343 116 55 0 chr4 22925305 22925650 -161363012 + THE1B LTR MaLR 1 364 0 6899 130 104 1 chr4 22925650 22926770 -161361892 + THE1B-int LTR MaLR 1 1236 -344 2297 152 8 0 chr4 22926914 22927275 -161361387 + THE1B LTR MaLR 1 364 0 256 268 24 12 chr4 22927275 22927357 -161361305 - L1MC4 LINE L1 -635 7407 7325 23 54 0 0 chr4 22927824 22927861 -161360801 + AT_rich Low_complexity Low_complexity 1 37 0 364 316 21 0 chr4 22928050 22928145 -161360517 + MIR SINE MIR 50 146 -62 302 277 158 103 chr4 22929459 22929878 -161358784 + MLT1H LTR MaLR 1 442 -107 287 364 23 23 chr4 22930348 22930477 -161358185 - Charlie8 DNA MER1_type -2137 280 152 1597 296 57 29 chr4 22930846 22931407 -161357255 - MLT1E LTR MaLR -14 579 3 25 65 0 0 chr4 22933018 22933064 -161355598 + AT_rich Low_complexity Low_complexity 1 46 0 2859 150 11 0 chr4 22933447 22933893 -161354769 - MER41E LTR ERV1 -61 451 1 1127 196 0 10 chr4 22933976 22934175 -161354487 - MER4D LTR ERV1 -706 197 1 848 299 67 26 chr4 22934831 22935366 -161353296 + L1ME4a LINE L1 5328 5884 -237 1937 85 0 0 chr4 22935639 22935886 -161352776 + AluY SINE Alu 41 287 -24 710 58 101 5 chr4 22935886 22936433 -161352229 + (TA)n Simple_repeat Simple_repeat 1 599 0 195 100 0 0 chr4 22936765 22936795 -161351867 + (TTTG)n Simple_repeat Simple_repeat 4 33 0 367 343 44 36 chr4 22936928 22937176 -161351486 + MIR SINE MIR 13 262 0 4613 181 31 31 chr4 22937916 22938563 -161350099 + L1MA10 LINE L1 5278 5930 -404 2056 120 0 7 chr4 22938563 22938892 -161349770 + AluSx SINE Alu 1 327 0 4613 181 31 31 chr4 22938892 22939288 -161349374 + L1MA10 LINE L1 5929 6324 -10 282 248 20 20 chr4 22939307 22939408 -161349254 + L1MB7 LINE L1 6073 6173 -11 216 292 0 0 chr4 22939432 22939480 -161349182 + L2 LINE L2 3185 3232 -40 2375 78 7 0 chr4 22939518 22939824 -161348838 - AluSg SINE Alu -2 308 1 377 385 39 0 chr4 22939872 22940028 -161348634 - MIR SINE MIR -89 173 12 230 102 34 17 chr4 22940478 22940537 -161348125 + LTR66 LTR ERVL 392 451 -159 192 40 0 0 chr4 22940561 22940586 -161348076 + (TG)n Simple_repeat Simple_repeat 2 26 0 2058 96 3 17 chr4 22940586 22940887 -161347775 - AluSp SINE Alu -16 297 1 1288 80 0 114 chr4 22941869 22942106 -161346556 + L1MA1 LINE L1 6089 6298 -4 23 0 0 0 chr4 22942413 22942436 -161346226 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr4 22942732 22942767 -161345895 + AT_rich Low_complexity Low_complexity 1 35 0 213 281 0 0 chr4 22943292 22943349 -161345313 + (CATA)n Simple_repeat Simple_repeat 4 60 0 873 276 14 5 chr4 22943673 22943894 -161344768 - L2 LINE L2 -534 2780 2558 351 324 108 32 chr4 22943974 22944289 -161344373 + L1ME4a LINE L1 3653 3991 -2155 1595 151 107 20 chr4 22944563 22944908 -161343754 - THE1C LTR MaLR 0 375 1 444 299 87 43 chr4 22945087 22945642 -161343020 + L1ME4a LINE L1 5525 6103 -18 2248 146 8 6 chr4 22946004 22946367 -161342295 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr4 22946423 22946444 -161342218 + AT_rich Low_complexity Low_complexity 1 21 0 195 100 0 0 chr4 22947002 22947032 -161341630 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 23 0 0 0 chr4 22947237 22947260 -161341402 + AT_rich Low_complexity Low_complexity 1 23 0 256 336 15 0 chr4 22948155 22948292 -161340370 + (TA)n Simple_repeat Simple_repeat 2 140 0 1781 204 44 3 chr4 22950471 22950838 -161337824 + MLT1B LTR MaLR 1 382 -8 6706 127 16 3 chr4 22951663 22952771 -161335891 - L1MA3 LINE L1 -8 6297 5175 2095 123 150 5 chr4 22952849 22953223 -161335439 + MSTA LTR MaLR 1 428 0 669 0 0 0 chr4 22953777 22953891 -161334771 + L1PA4 LINE L1 6063 6176 0 613 241 86 0 chr4 22953954 22954116 -161334546 - MIR SINE MIR -84 178 3 256 138 0 103 chr4 22954230 22954288 -161334374 - L2 LINE L2 0 3313 3262 531 102 0 0 chr4 22954902 22954990 -161333672 + (TG)n Simple_repeat Simple_repeat 1 88 0 227 209 0 0 chr4 22955196 22955239 -161333423 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 208 89 133 0 chr4 22956036 22956081 -161332581 + (TTCA)n Simple_repeat Simple_repeat 1 51 0 349 281 96 7 chr4 22956544 22956679 -161331983 - MIR SINE MIR -18 244 98 442 198 0 0 chr4 22957140 22957221 -161331441 - Charlie7 DNA MER1_type -862 1750 1670 22 0 0 0 chr4 22957459 22957481 -161331181 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr4 22957770 22957802 -161330860 + AT_rich Low_complexity Low_complexity 1 32 0 6351 86 11 2 chr4 22958134 22959912 -161328750 - L1PA10 LINE L1 -12 6156 4376 363 311 57 0 chr4 22959922 22960044 -161328618 + MIR SINE MIR 112 240 -22 22 0 0 0 chr4 22960050 22960072 -161328590 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr4 22960274 22960306 -161328356 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr4 22960966 22960990 -161327672 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr4 22961417 22961438 -161327224 + AT_rich Low_complexity Low_complexity 1 21 0 651 309 77 26 chr4 22961514 22961903 -161326759 + MLT1I LTR MaLR 1 409 0 377 322 93 37 chr4 22963501 22963715 -161324947 - LTR33 LTR ERVL -237 284 59 1686 108 29 0 chr4 22963841 22964081 -161324581 - AluSx SINE Alu -24 288 42 5764 66 0 4 chr4 22964081 22964811 -161323851 + LTR17 LTR ERV1 1 727 -53 256 187 32 5 chr4 22964811 22964886 -161323776 - Alu SINE Alu -257 45 1 300 269 54 11 chr4 22966013 22966106 -161322556 - L1MC4 LINE L1 -1330 6712 6616 286 333 16 8 chr4 22966273 22966399 -161322263 + MIR SINE MIR 120 246 -16 1572 218 77 48 chr4 22967606 22968124 -161320538 - LTR55 LTR ERV -10 538 6 1895 182 50 40 chr4 22969014 22969493 -161319169 + LTR2B LTR ERV1 7 490 0 197 231 0 183 chr4 22969954 22970058 -161318604 - L2 LINE L2 0 3313 3229 224 368 77 7 chr4 22970117 22970272 -161318390 - MIR3 SINE MIR -23 185 20 228 237 68 0 chr4 22970555 22970614 -161318048 - L2 LINE L2 -1 3271 3209 292 319 29 30 chr4 22972136 22972286 -161316376 - MIR SINE MIR -65 143 16 234 309 47 50 chr4 22972456 22972630 -161316032 + MIR SINE MIR 20 190 -67 22 0 0 0 chr4 22972752 22972774 -161315888 + AT_rich Low_complexity Low_complexity 1 22 0 40 21 0 0 chr4 22973231 22973278 -161315384 + AT_rich Low_complexity Low_complexity 1 47 0 209 348 101 14 chr4 22973339 22973477 -161315185 - L3 LINE CR1 -599 978 829 532 252 0 0 chr4 22973491 22973626 -161315036 - L1MA4 LINE L1 -11 6289 6155 537 183 9 0 chr4 22973627 22973742 -161314920 + L1MA4 LINE L1 6046 6161 -139 207 336 76 25 chr4 22974329 22974448 -161314214 + MIR3 SINE MIR 83 207 -1 347 338 82 21 chr4 22975611 22975951 -161312711 - L1MC4a LINE L1 -1937 5940 5580 227 266 63 13 chr4 22976153 22976232 -161312430 - MIR SINE MIR -98 164 82 681 393 33 24 chr4 22977518 22978065 -161310597 - MLT1K LTR MaLR 0 588 37 23 33 0 0 chr4 22979103 22979133 -161309529 + AT_rich Low_complexity Low_complexity 1 30 0 6552 77 0 12 chr4 22979698 22980777 -161307885 - L1PA7 LINE L1 0 6154 5067 427 148 0 0 chr4 22980778 22980839 -161307823 + 5S rRNA rRNA 32 92 -29 529 299 69 35 chr4 22980850 22981081 -161307581 - L1ME1 LINE L1 -19 6147 5909 897 234 40 45 chr4 22981224 22981578 -161307084 - L1MC4a LINE L1 -782 5433 5082 * 1509 247 90 66 chr4 22981564 22982409 -161306253 - L1MC4a LINE L1 -2923 3292 2428 1340 306 66 44 chr4 22982409 22983228 -161305434 - L1MC4a LINE L1 -5516 880 44 821 310 64 42 chr4 22983275 22983636 -161305026 - MLT1J2 LTR MaLR -33 417 49 1434 202 29 13 chr4 22983638 22984014 -161304648 - Charlie5 DNA MER1_type 0 2623 2242 393 216 57 0 chr4 22984028 22984116 -161304546 - Charlie5 DNA MER1_type -2507 105 13 834 261 11 70 chr4 22984128 22984485 -161304177 + MER58B DNA MER1_type 6 341 0 225 108 0 0 chr4 22986307 22986344 -161302318 + (TG)n Simple_repeat Simple_repeat 2 38 0 377 254 76 17 chr4 22986485 22986603 -161302059 - MER20B DNA MER1_type -594 189 65 198 0 0 0 chr4 22987914 22987936 -161300726 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 21 0 0 0 chr4 22987978 22987999 -161300663 + AT_rich Low_complexity Low_complexity 1 21 0 2130 92 16 0 chr4 22988001 22988307 -161300355 - L1PA13 LINE L1 -3 6160 5850 25 0 0 0 chr4 22988459 22988484 -161300178 + AT_rich Low_complexity Low_complexity 1 25 0 1026 117 17 22 chr4 22989006 22989185 -161299477 - L1PA11 LINE L1 -2 6172 5995 21 36 0 0 chr4 22989290 22989318 -161299344 + AT_rich Low_complexity Low_complexity 1 28 0 225 0 0 0 chr4 22989570 22989595 -161299067 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 2097 79 4 0 chr4 22991761 22992026 -161296636 + AluSg SINE Alu 13 278 -32 540 292 33 53 chr4 22992372 22992673 -161295989 + MLT1L LTR MaLR 321 615 0 304 379 35 6 chr4 22992715 22992889 -161295773 - MIR SINE MIR -48 214 36 270 81 0 0 chr4 22993294 22993331 -161295331 + (T)n Simple_repeat Simple_repeat 1 37 0 6585 11 0 3 chr4 22993334 22994083 -161294579 - L1HS LINE L1 0 6155 5409 337 217 14 0 chr4 22994300 22994369 -161294293 - L2 LINE L2 0 3313 3244 277 361 94 11 chr4 22995061 22995241 -161293421 - MIR SINE MIR -36 226 32 2213 119 0 0 chr4 22995494 22995797 -161292865 - AluSq SINE Alu -10 303 1 24 32 0 0 chr4 22996324 22996355 -161292307 + AT_rich Low_complexity Low_complexity 1 31 0 504 261 103 69 chr4 22996595 22996985 -161291677 - MLT1L LTR MaLR -19 596 194 369 62 0 0 chr4 22997304 22997352 -161291310 + (TG)n Simple_repeat Simple_repeat 1 48 0 481 299 7 21 chr4 22997359 22997503 -161291159 - MER58B DNA MER1_type -26 315 174 507 253 19 136 chr4 22997860 22997932 -161290730 + L2 LINE L2 3087 3166 -147 1904 145 23 54 chr4 22997932 22998319 -161290343 - THE1C LTR MaLR 0 375 1 507 253 19 136 chr4 22998319 22998503 -161290159 + L2 LINE L2 3166 3313 0 200 293 10 101 chr4 22998536 22998635 -161290027 - L3 LINE CR1 -1475 102 13 3868 87 9 9 chr4 22998730 22999292 -161289370 + L1MA1 LINE L1 5741 6302 0 35 24 0 0 chr4 22999327 22999369 -161289293 + AT_rich Low_complexity Low_complexity 1 42 0 1804 97 8 0 chr4 22999472 22999730 -161288932 + L1PA13 LINE L1 5895 6154 -9 205 352 14 14 chr4 22999735 22999806 -161288856 - L2 LINE L2 -9 3263 3193 30 69 0 0 chr4 22999841 22999899 -161288763 + AT_rich Low_complexity Low_complexity 1 58 0 305 206 0 128 chr4 22999960 23000062 -161288600 - L1MC4 LINE L1 -1340 6702 6614 28 0 0 0 chr4 23000109 23000137 -161288525 + AT_rich Low_complexity Low_complexity 1 28 0 501 195 0 0 chr4 23000507 23000584 -161288078 - MER2 DNA MER2_type 0 345 269 282 232 0 0 chr4 23001209 23001265 -161287397 - MIR SINE MIR -115 147 92 2069 88 3 61 chr4 23001356 23001684 -161286978 - AluSg SINE Alu -1 309 1 675 270 34 39 chr4 23002425 23002658 -161286004 + MIR SINE MIR 1 232 -30 202 322 44 11 chr4 23002761 23002851 -161285811 - MIR3 SINE MIR -10 198 106 361 247 24 102 chr4 23005279 23005445 -161283217 + MER21B LTR ERV1 1 153 -710 374 298 90 22 chr4 23005485 23005663 -161282999 + L1PA13 LINE L1 1069 1258 -5529 9158 196 17 59 chr4 23005666 23007786 -161280876 + L1PA13 LINE L1 1396 3602 -3195 489 37 0 98 chr4 23007786 23007815 -161280847 + MADE1 DNA Mariner 6 36 -44 2189 121 0 3 chr4 23007815 23008121 -161280541 - AluSq SINE Alu -8 305 1 489 37 0 98 chr4 23008121 23008173 -161280489 + MADE1 DNA Mariner 36 79 -1 9158 196 17 59 chr4 23008173 23008514 -161280148 + L1PA13 LINE L1 3602 3769 -3028 2153 105 7 0 chr4 23008514 23008808 -161279854 + AluSg SINE Alu 1 296 -14 9158 196 17 59 chr4 23008808 23009294 -161279368 + L1PA13 LINE L1 3769 4274 -2523 21 71 0 0 chr4 23009510 23009552 -161279110 + AT_rich Low_complexity Low_complexity 1 42 0 1745 161 73 14 chr4 23009912 23010266 -161278396 - THE1C LTR MaLR 0 375 1 2287 81 7 3 chr4 23010384 23010679 -161277983 - AluY SINE Alu -15 296 1 420 297 78 60 chr4 23011116 23011348 -161277314 - MIR SINE MIR -22 240 5 29 28 0 0 chr4 23011650 23011686 -161276976 + AT_rich Low_complexity Low_complexity 1 36 0 275 246 0 0 chr4 23011791 23011856 -161276806 + (TA)n Simple_repeat Simple_repeat 1 65 0 325 341 29 29 chr4 23011862 23012070 -161276592 - L1M4 LINE L1 -1313 4833 4626 202 436 39 8 chr4 23012520 23012777 -161275885 - L2 LINE L2 -154 3118 2854 2627 149 12 14 chr4 23012967 23013396 -161275266 - MSTA LTR MaLR 0 428 1 235 319 116 65 chr4 23013579 23013795 -161274867 - MLT1L LTR MaLR -371 244 18 222 338 150 10 chr4 23013824 23014031 -161274631 - L2 LINE L2 -1369 1945 1710 22 0 0 0 chr4 23014652 23014674 -161273988 + AT_rich Low_complexity Low_complexity 1 22 0 326 109 0 0 chr4 23014764 23014810 -161273852 - L1P LINE L1 -3282 2864 2819 926 100 87 0 chr4 23014831 23014981 -161273681 + L1P LINE L1 2871 3033 -3113 371 310 125 27 chr4 23115012 23115346 -161173316 - L2 LINE L2 -229 3084 2726 675 128 0 28 chr4 23116555 23116664 -161171998 - L1MD3 LINE L1 -28 7967 7862 1056 176 26 0 chr4 23116678 23116871 -161171791 - MLT2B1 LTR ERVL -322 198 1 16791 168 21 6 chr4 23116871 23119680 -161168982 - ERVL-B1 LTR ERVL -7 5757 2907 4849 201 26 21 chr4 23119684 23120203 -161168459 - ERVL-B1 LTR ERVL -3977 1787 1258 2385 63 0 7 chr4 23120203 23120532 -161168130 - AluY SINE Alu 0 327 1 4849 201 26 21 chr4 23120532 23121015 -161167647 - ERVL-B1 LTR ERVL -4506 1258 779 716 142 8 37 chr4 23121023 23121157 -161167505 - MLT2B1 LTR ERVL -389 131 2 1953 110 76 7 chr4 23121507 23121797 -161166865 + AluSx SINE Alu 1 310 -2 427 309 90 17 chr4 23122148 23122449 -161166213 + L1ME4a LINE L1 5531 5853 -268 267 31 0 0 chr4 23123242 23123274 -161165388 + (GA)n Simple_repeat Simple_repeat 1 32 0 1996 201 57 5 chr4 23123619 23124041 -161164621 - MLT1C LTR MaLR -2 465 22 895 299 129 27 chr4 23124098 23124540 -161164122 + MLT1K LTR MaLR 101 587 -1 685 295 44 1 chr4 23124652 23124884 -161163778 + MIR SINE MIR 22 260 -2 268 306 40 16 chr4 23124901 23125025 -161163637 - MIR SINE MIR -75 187 61 427 293 84 87 chr4 23125366 23125721 -161162941 - L2 LINE L2 0 3313 2960 2384 106 0 0 chr4 23126051 23126363 -161162299 + AluSx SINE Alu 1 312 0 287 362 29 7 chr4 23126937 23127075 -161161587 + L2 LINE L2 2941 3081 -191 731 244 77 24 chr4 23127270 23127516 -161161146 - MIR SINE MIR 0 262 4 330 230 0 14 chr4 23127573 23127647 -161161015 + L2 LINE L2 3240 3312 -1 513 275 70 20 chr4 23127781 23127981 -161160681 - MIR SINE MIR -2 260 51 2333 97 13 3 chr4 23128113 23128421 -161160241 + AluSq SINE Alu 1 311 -2 354 226 26 35 chr4 23128667 23128782 -161159880 - Charlie8 DNA MER1_type -2228 189 76 598 321 13 11 chr4 23129523 23129763 -161158899 + MIR SINE MIR 13 250 -12 2264 100 0 3 chr4 23129856 23130146 -161158516 - AluSg SINE Alu -15 295 7 1087 142 0 0 chr4 23130326 23130507 -161158155 - AluSg/x SINE Alu 0 309 129 2399 88 13 0 chr4 23130508 23130814 -161157848 - AluSg SINE Alu 0 310 1 514 293 81 22 chr4 23130828 23131050 -161157612 - MIR SINE MIR -18 244 10 180 200 0 0 chr4 23131225 23131265 -161157397 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 189 74 0 0 chr4 23131267 23131294 -161157368 + (TG)n Simple_repeat Simple_repeat 1 27 0 207 0 0 0 chr4 23132796 23132819 -161155843 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 934 55 0 0 chr4 23134032 23134141 -161154521 + THE1B LTR MaLR 1 109 -255 373 276 131 0 chr4 23135095 23135240 -161153422 + MIR SINE MIR 99 262 0 719 150 150 0 chr4 23135505 23135625 -161153037 - FRAM SINE Alu -19 157 20 22 0 0 0 chr4 23135826 23135848 -161152814 + AT_rich Low_complexity Low_complexity 1 22 0 387 171 73 0 chr4 23136034 23136116 -161152546 - Charlie8 DNA MER1_type -2141 276 189 735 223 13 46 chr4 23136215 23136414 -161152248 - MLT1A2 LTR MaLR -7 374 173 323 169 14 0 chr4 23136414 23136485 -161152177 + GA-rich Low_complexity Low_complexity 1 72 0 847 216 28 11 chr4 23136485 23136666 -161151996 - MLT1A2 LTR MaLR -187 187 4 327 340 82 19 chr4 23137372 23137578 -161151084 - MIR SINE MIR -11 251 33 254 335 103 46 chr4 23137604 23137798 -161150864 + L2 LINE L2 3044 3248 -24 752 266 15 5 chr4 23138134 23138337 -161150325 + MIR SINE MIR 18 222 -40 533 258 186 21 chr4 23140330 23140655 -161148007 + MLT1J2 LTR MaLR 77 450 0 193 29 59 0 chr4 23141097 23141131 -161147531 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 1381 139 0 10 chr4 23142272 23142480 -161146182 - MER1B DNA MER1_type 0 339 134 256 158 0 0 chr4 23142477 23142515 -161146147 - MER1B DNA MER1_type -299 38 1 * 200 274 0 32 chr4 23142523 23142585 -161146077 + MIR SINE MIR 165 224 -38 266 87 22 0 chr4 23143964 23144010 -161144652 + (TA)n Simple_repeat Simple_repeat 1 47 0 * 297 0 0 0 chr4 23144009 23144042 -161144620 + (TG)n Simple_repeat Simple_repeat 2 34 0 1922 132 45 3 chr4 23144376 23144663 -161143999 - AluSx SINE Alu -13 299 1 365 293 8 30 chr4 23144663 23144796 -161143866 + MIR SINE MIR 120 249 -13 2580 46 7 0 chr4 23145240 23145547 -161143115 - AluY SINE Alu -2 309 1 368 259 22 44 chr4 23145868 23146003 -161142659 + LTR67 LTR ERVL 426 557 0 204 309 69 117 chr4 23146940 23147231 -161141431 + L2 LINE L2 2930 3206 -66 2230 106 10 7 chr4 23147303 23147604 -161141058 + AluSx SINE Alu 1 302 -10 21 36 0 0 chr4 23148116 23148144 -161140518 + AT_rich Low_complexity Low_complexity 1 28 0 225 270 40 0 chr4 23148198 23148272 -161140390 - MER5A DNA MER1_type -59 130 54 22 56 0 0 chr4 23148284 23148320 -161140342 + AT_rich Low_complexity Low_complexity 1 36 0 1558 223 72 24 chr4 23148669 23149167 -161139495 - HsTC2 DNA Tc2 -103 1795 1274 34 24 0 0 chr4 23149357 23149398 -161139264 + AT_rich Low_complexity Low_complexity 1 41 0 824 211 71 11 chr4 23149504 23149736 -161138926 + L1MB7 LINE L1 5665 5916 -265 22 35 0 0 chr4 23149975 23150004 -161138658 + AT_rich Low_complexity Low_complexity 1 29 0 467 305 63 93 chr4 23150234 23150536 -161138126 - L3 LINE CR1 -111 1466 1174 287 282 49 55 chr4 23151042 23151205 -161137457 - L2 LINE L2 -21 3292 3131 287 245 0 0 chr4 23151205 23151285 -161137377 - MER63 DNA MER1_type -523 537 459 219 42 0 83 chr4 23151294 23151342 -161137320 + (TAAAAA)n Simple_repeat Simple_repeat 2 45 0 3552 193 51 24 chr4 23151462 23151715 -161136947 + MER63C DNA MER1_type 13 258 -802 2348 88 0 7 chr4 23151715 23152020 -161136642 + AluSx SINE Alu 1 303 -9 3552 193 51 24 chr4 23152020 23152550 -161136112 + MER63C DNA MER1_type 258 817 -113 2197 89 3 3 chr4 23152704 23153010 -161135652 + AluSq SINE Alu 1 306 0 443 290 15 8 chr4 23153206 23153337 -161135325 + MIR3 SINE MIR 70 201 -7 281 341 104 39 chr4 23153967 23154149 -161134513 + MIR SINE MIR 6 199 -63 557 227 24 134 chr4 23154354 23154601 -161134061 + MIR SINE MIR 21 240 -22 203 100 0 25 chr4 23154604 23154644 -161134018 + (CAT)n Simple_repeat Simple_repeat 3 41 0 479 226 0 6 chr4 23154660 23154841 -161133821 + (CAT)n Simple_repeat Simple_repeat 1 180 0 265 222 19 0 chr4 23155661 23155715 -161132947 + MER117 DNA MER1_type 1 55 -142 215 141 51 154 chr4 23155887 23155965 -161132697 + L2 LINE L2 2548 2617 -697 947 260 69 30 chr4 23156369 23156802 -161131860 - MLT1G1 LTR MaLR -83 512 1 302 313 68 45 chr4 23157015 23157191 -161131471 + MIR3 SINE MIR 20 199 -9 437 272 146 28 chr4 23157592 23157846 -161130816 - L2 LINE L2 -173 3140 2857 1852 139 0 26 chr4 23158368 23158677 -161129985 - AluSx SINE Alu -11 301 1 2282 96 3 3 chr4 23158695 23158996 -161129666 - AluSq SINE Alu -12 301 1 435 256 151 49 chr4 23159531 23159680 -161128982 - MLT1J2 LTR MaLR -80 366 234 2563 65 0 0 chr4 23159680 23159987 -161128675 + AluY SINE Alu 2 308 -3 435 256 151 49 chr4 23159987 23160142 -161128520 - MLT1J2 LTR MaLR -212 234 31 2354 112 3 0 chr4 23161046 23161358 -161127304 - AluSp SINE Alu 0 313 1 22 35 0 0 chr4 23161445 23161474 -161127188 + AT_rich Low_complexity Low_complexity 1 29 0 304 290 60 0 chr4 23161650 23161750 -161126912 - MIR SINE MIR -71 191 86 226 234 65 0 chr4 23161868 23161945 -161126717 - L2 LINE L2 -292 2980 2899 879 203 16 16 chr4 23162244 23162436 -161126226 + MER20 DNA MER1_type 28 219 0 262 297 20 74 chr4 23163040 23163188 -161125474 - MIR3 SINE MIR -11 197 58 266 319 102 56 chr4 23163548 23163957 -161124705 + L2 LINE L2 2791 3223 -49 * 587 315 25 68 chr4 23163924 23164018 -161124644 + L2 LINE L2 2934 3030 -283 1061 192 37 28 chr4 23164018 23164232 -161124430 + MER20 DNA MER1_type 2 217 -2 587 315 25 68 chr4 23164232 23164534 -161124128 + L2 LINE L2 3030 3313 0 182 254 200 0 chr4 23164813 23164868 -161123794 - MIR3 SINE MIR -28 180 115 271 290 14 0 chr4 23164915 23164984 -161123678 - MIR SINE MIR -106 102 33 365 204 51 71 chr4 23165264 23165362 -161123300 - L2 LINE L2 -41 3231 3136 649 270 71 22 chr4 23165516 23165742 -161122920 - MIR SINE MIR 0 262 26 540 245 117 0 chr4 23165838 23166001 -161122661 - MIR SINE MIR -14 248 67 1097 193 32 16 chr4 23166002 23166251 -161122411 - L1MB7 LINE L1 -244 5940 5688 545 318 10 16 chr4 23166339 23166531 -161122131 + MIR SINE MIR 13 203 -59 2309 92 3 7 chr4 23166908 23167213 -161121449 - AluSg SINE Alu -6 304 1 855 188 0 20 chr4 23167216 23167365 -161121297 + AluJo/FRAM SINE Alu 166 311 -1 3354 128 23 2 chr4 23167391 23167876 -161120786 + MER1A DNA MER1_type 32 526 -3 304 363 49 19 chr4 23167917 23168184 -161120478 - L1M4 LINE L1 -1083 5063 4789 573 258 35 76 chr4 23168185 23168499 -161120163 - L1ME4a LINE L1 -232 5889 5589 194 208 21 21 chr4 23168704 23168752 -161119910 - L2 LINE L2 0 3313 3266 1106 319 30 28 chr4 23169151 23169693 -161118969 - L2 LINE L2 -556 2758 2216 335 317 24 32 chr4 23170140 23170263 -161118399 - MIR SINE MIR -140 122 1 316 286 108 35 chr4 23170613 23170816 -161117846 + MIR SINE MIR 29 246 -16 213 288 144 0 chr4 23170990 23171101 -161117561 + MIR SINE MIR 121 247 -15 284 234 25 29 chr4 23171132 23171287 -161117375 + MIR SINE MIR 34 150 -112 2234 154 98 0 chr4 23171302 23171691 -161116971 + MSTB1 LTR MaLR 1 427 -5 329 300 57 44 chr4 23172989 23173216 -161115446 - MLT1H1 LTR MaLR -15 540 311 296 238 16 0 chr4 23173375 23173438 -161115224 - MLT1F LTR MaLR -459 83 20 223 377 150 0 chr4 23173484 23173651 -161115011 - MIR SINE MIR -13 249 58 278 303 197 19 chr4 23173949 23174157 -161114505 + MIR SINE MIR 10 254 -8 490 240 16 24 chr4 23174804 23174929 -161113733 - MER63 DNA MER1_type -85 751 2 2102 246 81 19 chr4 23175036 23175706 -161112956 + L1ME2 LINE L1 5447 6157 -7 346 294 55 0 chr4 23175783 23175892 -161112770 + MIR SINE MIR 37 151 -111 263 278 14 42 chr4 23175919 23175991 -161112671 - L2 LINE L2 -35 3237 3168 2247 99 0 0 chr4 23176003 23176296 -161112366 - AluSg SINE Alu -17 293 1 501 254 63 7 chr4 23176372 23176514 -161112148 - Charlie8 DNA MER1_type -2160 257 108 342 280 110 16 chr4 23176589 23176771 -161111891 - L2 LINE L2 0 3313 3115 2329 97 0 0 chr4 23177306 23177606 -161111056 + AluSc SINE Alu 5 304 -5 611 302 14 42 chr4 23178797 23179009 -161109653 + MIR SINE MIR 57 262 0 988 297 123 16 chr4 23179024 23179448 -161109214 - MLT1J LTR MaLR -4 507 39 867 288 115 39 chr4 23179561 23179943 -161108719 + L2 LINE L2 2535 2945 -369 317 243 75 26 chr4 23179966 23180082 -161108580 - MIR SINE MIR -87 121 3 2105 153 46 22 chr4 23180620 23180986 -161107676 - THE1C LTR MaLR 0 375 1 2237 102 3 22 chr4 23181005 23181318 -161107344 - AluSc SINE Alu -2 307 1 286 339 21 12 chr4 23181471 23181642 -161107020 - MIR SINE MIR -66 142 19 21 0 0 0 chr4 23181642 23181663 -161106999 + AT_rich Low_complexity Low_complexity 1 21 0 323 305 59 62 chr4 23181695 23182036 -161106626 - HAL1 LINE L1 -1532 975 636 227 282 0 42 chr4 23182183 23182254 -161106408 - HAL1 LINE L1 -2220 287 220 228 70 35 35 chr4 23185111 23185168 -161103494 + (TCTA)n Simple_repeat Simple_repeat 3 59 0 27 62 0 0 chr4 23185285 23185333 -161103329 + AT_rich Low_complexity Low_complexity 1 48 0 320 285 73 8 chr4 23186398 23186521 -161102141 + L2 LINE L2 3141 3271 -1 287 268 143 0 chr4 23186747 23186859 -161101803 + MIR SINE MIR 135 262 0 246 62 0 0 chr4 23187068 23187100 -161101562 + (CA)n Simple_repeat Simple_repeat 1 32 0 218 191 16 63 chr4 23188033 23188096 -161100566 + MIR SINE MIR 87 146 -62 326 309 13 54 chr4 23188331 23188480 -161100182 + MIR SINE MIR 118 260 -2 2106 92 17 17 chr4 23188494 23188787 -161099875 + AluSx SINE Alu 1 293 -19 199 250 250 64 chr4 23189162 23189302 -161099360 - MIR SINE MIR -58 204 39 216 0 0 0 chr4 23189539 23189563 -161099099 + (T)n Simple_repeat Simple_repeat 1 24 0 2628 39 0 19 chr4 23189621 23189933 -161098729 + AluY SINE Alu 1 306 -5 635 276 183 29 chr4 23190650 23191027 -161097635 + L2 LINE L2 2879 3313 0 204 40 0 0 chr4 23191825 23191850 -161096812 + (T)n Simple_repeat Simple_repeat 1 25 0 371 244 166 67 chr4 23192116 23192183 -161096479 + MER112 DNA MER1_type 1 60 -200 315 0 0 0 chr4 23192183 23192218 -161096444 + (CA)n Simple_repeat Simple_repeat 2 36 0 371 244 166 67 chr4 23192218 23192343 -161096319 + MER112 DNA MER1_type 60 212 -48 195 342 25 13 chr4 23192361 23192440 -161096222 - MIR3 SINE MIR -45 163 84 225 256 77 26 chr4 23193194 23193272 -161095390 - L3 LINE CR1 -5 1572 1491 239 313 16 0 chr4 23194209 23194273 -161094389 + MIR SINE MIR 9 73 -189 287 209 75 0 chr4 23194303 23194370 -161094292 + MIR SINE MIR 166 237 -25 216 342 13 0 chr4 23194758 23194834 -161093828 + L2 LINE L2 3197 3273 -40 228 67 0 0 chr4 23194847 23194877 -161093785 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 2171 109 16 7 chr4 23195046 23195349 -161093313 - AluSx SINE Alu -5 307 2 1489 181 40 23 chr4 23195403 23195707 -161092955 + AluJo SINE Alu 1 309 -3 201 189 0 0 chr4 23196912 23196949 -161091713 + MIR SINE MIR 222 258 -4 22 0 0 0 chr4 23197214 23197236 -161091426 + AT_rich Low_complexity Low_complexity 1 22 0 457 225 0 0 chr4 23197341 23197421 -161091241 - Tigger3(Golem) DNA MER2_type -2949 80 1 188 344 94 23 chr4 23197433 23197561 -161091101 + MIR SINE MIR 16 152 -110 483 213 130 53 chr4 23197691 23197787 -161090875 + MIR SINE MIR 69 156 -106 2086 123 3 10 chr4 23197787 23198095 -161090567 - AluSx SINE Alu -6 306 1 483 213 130 53 chr4 23198095 23198167 -161090495 + MIR SINE MIR 156 250 -12 509 189 6 63 chr4 23198306 23198465 -161090197 + L2 LINE L2 3164 3313 0 2178 113 0 3 chr4 23200119 23200410 -161088252 - AluSx SINE Alu -20 292 3 276 372 33 0 chr4 23200451 23200572 -161088090 + L2 LINE L2 3143 3267 -5 432 271 13 46 chr4 23201256 23201407 -161087255 - L2 LINE L2 -7 3306 3161 299 288 27 55 chr4 23201850 23201996 -161086666 - L2 LINE L2 0 3313 3172 2500 55 0 3 chr4 23202298 23202608 -161086054 + AluY SINE Alu 1 309 -2 928 221 142 12 chr4 23202734 23203065 -161085597 - LTR37A LTR ERV1 0 426 53 994 167 5 21 chr4 23203324 23203516 -161085146 + MER53 DNA DNA 1 189 0 2265 82 0 20 chr4 23204120 23204425 -161084237 + AluSx SINE Alu 1 299 -13 210 37 0 0 chr4 23206147 23206174 -161082488 + (CAA)n Simple_repeat Simple_repeat 2 28 0 2243 106 0 0 chr4 23206174 23206476 -161082186 + AluSg SINE Alu 1 302 -8 340 211 105 0 chr4 23207192 23207268 -161081394 - MIR SINE MIR -25 237 154 285 192 0 0 chr4 23207800 23207852 -161080810 + MIR SINE MIR 50 101 -161 227 192 53 72 chr4 23208699 23208792 -161079870 - MIR SINE MIR -7 201 117 620 250 41 51 chr4 23209380 23209576 -161079086 + MIR SINE MIR 25 218 -44 236 219 110 27 chr4 23209603 23209676 -161078986 + MER116 DNA Mariner 1 79 -1 233 292 15 0 chr4 23209712 23209777 -161078885 + L2 LINE L2 3004 3069 -203 289 265 165 45 chr4 23209990 23210251 -161078411 - L2 LINE L2 -209 3063 2776 387 244 134 8 chr4 23210251 23210370 -161078292 + MER96 DNA MER1_type? 42 175 0 255 320 53 53 chr4 23210371 23210521 -161078141 - L2 LINE L2 -536 2778 2629 439 199 21 9 chr4 23210896 23210910 -161077752 + L1MC3 LINE L1 6619 6631 -1154 1606 164 29 4 chr4 23210910 23211205 -161077457 + AluJb SINE Alu 1 302 0 439 199 21 9 chr4 23211205 23211291 -161077371 + L1MC3 LINE L1 6631 6703 -1082 * 788 183 37 12 chr4 23211289 23211453 -161077209 + L1MC3 LINE L1 6918 7085 -700 281 161 125 40 chr4 23211453 23211550 -161077112 + MLT1F1 LTR MaLR 35 166 -383 2661 198 20 46 chr4 23211559 23211971 -161076691 + L1MC3 LINE L1 7197 7589 -196 1234 197 53 4 chr4 23211971 23212199 -161076463 + MER8 DNA MER2_type 1 239 0 2661 198 20 46 chr4 23212199 23212391 -161076271 + L1MC3 LINE L1 7589 7785 0 2325 110 0 0 chr4 23212652 23212951 -161075711 + AluSg SINE Alu 1 299 -11 482 291 0 0 chr4 23212951 23213078 -161075584 + MIR SINE MIR 80 206 -56 228 211 211 0 chr4 23213159 23213235 -161075427 - MIR SINE MIR -94 168 77 2033 58 0 16 chr4 23213737 23213995 -161074667 - AluY SINE Alu -1 310 57 415 288 131 6 chr4 23214236 23214396 -161074266 - MER91A DNA MER1_type -13 183 4 2344 196 69 42 chr4 23214874 23215380 -161073282 - MLT2B1 LTR ERVL 0 520 1 184 413 22 11 chr4 23215546 23215638 -161073024 - L2 LINE L2 -38 3234 3142 381 293 89 71 chr4 23215796 23216293 -161072369 - L2 LINE L2 -255 3058 2548 229 204 0 0 chr4 23216897 23216941 -161071721 + L2 LINE L2 3262 3305 -8 258 293 73 0 chr4 23217201 23217283 -161071379 + MIR SINE MIR 63 150 -112 918 198 0 6 chr4 23217601 23217768 -161070894 + FRAM SINE Alu 1 164 -12 2308 67 3 0 chr4 23219045 23219365 -161069297 - AluY SINE Alu 0 321 1 21 0 0 0 chr4 23219455 23219476 -161069186 + AT_rich Low_complexity Low_complexity 1 21 0 425 298 55 37 chr4 23219845 23220063 -161068599 + L3 LINE CR1 1248 1469 -108 480 326 136 41 chr4 23220090 23220925 -161067737 + L2 LINE L2 2362 3310 -3 448 343 49 25 chr4 23221714 23221918 -161066744 + MIR SINE MIR 27 235 -27 404 323 81 39 chr4 23222165 23222397 -161066265 - L2 LINE L2 -866 2448 2200 270 0 0 0 chr4 23222397 23222427 -161066235 + (TG)n Simple_repeat Simple_repeat 2 31 0 404 323 81 39 chr4 23222427 23222479 -161066183 - L2 LINE L2 -1114 2200 2152 561 267 59 21 chr4 23222533 23222720 -161065942 + MER63A DNA MER1_type 1 194 -16 1355 130 0 5 chr4 23222872 23223072 -161065590 + AluSg/x SINE Alu 110 308 -2 534 279 117 6 chr4 23223495 23223674 -161064988 + MIR SINE MIR 57 255 -7 25 31 0 0 chr4 23224589 23224621 -161064041 + AT_rich Low_complexity Low_complexity 1 32 0 4528 211 15 25 chr4 23224624 23225727 -161062935 + L1MA9 LINE L1 5184 6274 -38 21 82 0 0 chr4 23225736 23225785 -161062877 + AT_rich Low_complexity Low_complexity 1 49 0 297 0 0 0 chr4 23225954 23225987 -161062675 + (CA)n Simple_repeat Simple_repeat 2 34 0 228 128 77 0 chr4 23226114 23226192 -161062470 + (TA)n Simple_repeat Simple_repeat 1 84 0 310 183 131 58 chr4 23226404 23226541 -161062121 + L1ME LINE L1 5266 5412 -750 4181 193 95 18 chr4 23226563 23227647 -161061015 + Charlie1 DNA MER1_type 39 2507 -254 268 179 60 15 chr4 23227648 23227715 -161060947 + Charlie1 DNA MER1_type 2683 2752 -9 415 277 49 37 chr4 23227724 23227899 -161060763 + L1ME LINE L1 5408 5587 -591 582 256 54 36 chr4 23227907 23228075 -161060587 - MER58B DNA MER1_type 0 341 171 280 308 51 0 chr4 23228967 23229045 -161059617 - MIR SINE MIR -70 192 111 251 176 111 65 chr4 23229060 23229168 -161059494 + MIR3 SINE MIR 4 116 -92 23 54 0 0 chr4 23229251 23229288 -161059374 + AT_rich Low_complexity Low_complexity 1 37 0 730 270 87 93 chr4 23230174 23230659 -161058003 + L2 LINE L2 2832 3313 0 2173 112 0 3 chr4 23230727 23231022 -161057640 + AluSg SINE Alu 2 295 -15 196 191 270 0 chr4 23231037 23231100 -161057562 - L2 LINE L2 0 3313 3234 1395 186 192 6 chr4 23231345 23231689 -161056973 - MLT1C LTR MaLR -7 460 53 183 406 10 10 chr4 23232451 23232552 -161056110 + MIR SINE MIR 13 113 -149 207 309 128 38 chr4 23232839 23232896 -161055766 + L2 LINE L2 3024 3074 -239 2210 124 0 0 chr4 23232896 23233202 -161055460 + AluSx SINE Alu 1 306 -6 207 309 128 38 chr4 23233202 23233409 -161055253 + L2 LINE L2 3074 3312 -1 248 273 61 10 chr4 23233780 23233879 -161054783 - L3 LINE CR1 -294 1283 1180 264 346 0 0 chr4 23234486 23234564 -161054098 - MIR3 SINE MIR -17 191 114 * 461 240 32 55 chr4 23234555 23234722 -161053940 + MIR SINE MIR 44 212 -43 278 347 113 16 chr4 23234769 23234893 -161053769 - L2 LINE L2 -10 3262 3127 669 266 33 16 chr4 23235577 23235761 -161052901 - MIR SINE MIR -7 255 69 932 286 65 17 chr4 23236032 23236716 -161051946 + L2 LINE L2 2548 3311 -2 244 196 89 0 chr4 23236713 23236769 -161051893 + MIR SINE MIR 114 174 -88 * 587 216 22 8 chr4 23236832 23236966 -161051696 - MIR SINE MIR -48 214 79 380 278 176 0 chr4 23237756 23237943 -161050719 - MIR SINE MIR -11 251 32 194 304 101 0 chr4 23238504 23238573 -161050089 - L2 LINE L2 -16 3297 3222 415 252 36 36 chr4 23238575 23238714 -161049948 - MIR SINE MIR -1 261 123 185 0 0 39 chr4 23239044 23239070 -161049592 + (TCTCC)n Simple_repeat Simple_repeat 5 29 0 180 0 0 0 chr4 23239112 23239132 -161049530 + (CCTG)n Simple_repeat Simple_repeat 2 21 0 324 70 0 0 chr4 23239740 23239783 -161048879 + (TA)n Simple_repeat Simple_repeat 2 44 0 186 43 0 0 chr4 23242201 23242224 -161046438 + (T)n Simple_repeat Simple_repeat 1 23 0 200 241 17 69 chr4 23242490 23242548 -161046114 + L2 LINE L2 3249 3303 -10 21 0 0 0 chr4 23244924 23244945 -161043717 + AT_rich Low_complexity Low_complexity 1 21 0 214 383 70 31 chr4 23245029 23245157 -161043505 - L2 LINE L2 -43 3229 3097 385 312 5 48 chr4 23245232 23245418 -161043244 - MIR SINE MIR -10 252 75 2351 105 0 0 chr4 23245740 23246045 -161042617 + AluSg SINE Alu 4 308 -2 27 29 0 0 chr4 23246118 23246152 -161042510 + AT_rich Low_complexity Low_complexity 1 34 0 508 353 107 0 chr4 23246930 23247256 -161041406 + L2 LINE L2 2586 2946 -368 477 246 160 43 chr4 23247441 23247697 -161040965 + L2 LINE L2 3027 3312 -1 273 98 0 0 chr4 23248220 23248261 -161040401 + (TG)n Simple_repeat Simple_repeat 1 41 0 180 0 0 0 chr4 23248260 23248280 -161040382 + (GA)n Simple_repeat Simple_repeat 1 20 0 * 325 322 29 1 chr4 23248420 23248523 -161040139 + MIR SINE MIR 31 132 -76 22 0 0 0 chr4 23249557 23249579 -161039083 + AT_rich Low_complexity Low_complexity 1 22 0 306 265 71 10 chr4 23249954 23250052 -161038610 - MIR3 SINE MIR -8 200 97 201 121 0 0 chr4 23250089 23250122 -161038540 + (T)n Simple_repeat Simple_repeat 1 33 0 2606 52 0 3 chr4 23250282 23250590 -161038072 - AluY SINE Alu -4 307 1 319 277 82 25 chr4 23250850 23251009 -161037653 - L1ME4a LINE L1 -157 5964 5797 1495 173 33 43 chr4 23251095 23251395 -161037267 - AluJb SINE Alu -3 309 13 1248 173 26 68 chr4 23251992 23252258 -161036404 - AluJb SINE Alu -11 301 47 478 301 96 13 chr4 23252359 23252588 -161036074 + MIR SINE MIR 6 253 -9 199 293 24 49 chr4 23252717 23252799 -161035863 - L2 LINE L2 -258 3014 2935 665 253 13 7 chr4 23252994 23253148 -161035514 + MIR SINE MIR 100 254 -8 189 74 0 0 chr4 23253180 23253207 -161035455 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 270 360 0 0 chr4 23255129 23255215 -161033447 - L2 LINE L2 -85 3187 3102 200 283 0 0 chr4 23255274 23255320 -161033342 + (CA)n Simple_repeat Simple_repeat 2 47 0 464 330 58 9 chr4 23255908 23256153 -161032509 - MIR SINE MIR -10 252 3 241 150 0 0 chr4 23256166 23256206 -161032456 - MIR SINE MIR -118 144 105 446 154 0 0 chr4 23256470 23256535 -161032127 - AluJb SINE Alu -247 65 1 237 378 35 35 chr4 23256791 23256963 -161031699 + L2 LINE L2 3092 3263 -9 609 236 40 40 chr4 23257450 23257624 -161031038 - MIR SINE MIR 0 262 89 836 262 87 88 chr4 23257712 23258266 -161030396 - MLT1H1 LTR MaLR -2 553 1 2933 111 7 70 chr4 23308388 23308460 -160980202 - L1PA8A LINE L1 -579 5552 5477 2716 26 0 0 chr4 23308460 23308765 -160979897 - AluYa5 SINE Alu -6 305 1 2933 111 7 70 chr4 23308765 23309417 -160979245 - L1PA8A LINE L1 -654 5477 4860 492 18 0 0 chr4 23310153 23310210 -160978452 + (TG)n Simple_repeat Simple_repeat 1 57 0 201 176 274 29 chr4 23310237 23310339 -160978323 + MIR3 SINE MIR 15 141 -67 2026 115 3 30 chr4 23310843 23311148 -160977514 + AluSx SINE Alu 1 297 -15 22 80 0 0 chr4 23312186 23312236 -160976426 + AT_rich Low_complexity Low_complexity 1 50 0 498 316 47 0 chr4 23312392 23312582 -160976080 - MIR SINE MIR -61 201 3 372 293 45 25 chr4 23313764 23313921 -160974741 + L1MD2 LINE L1 5462 5621 -2187 336 327 65 39 chr4 23313929 23314189 -160974473 + L1MD2 LINE L1 5725 5991 -368 312 263 73 22 chr4 23314325 23314462 -160974200 - MLT1J2 LTR MaLR -51 399 256 207 69 0 0 chr4 23315727 23315756 -160972906 + (TA)n Simple_repeat Simple_repeat 2 30 0 1501 184 62 7 chr4 23316122 23316410 -160972252 + AluJo SINE Alu 1 304 -8 491 359 97 4 chr4 23317037 23317296 -160971366 + L3 LINE CR1 547 829 -748 253 311 0 0 chr4 23317454 23317515 -160971147 + L2 LINE L2 3160 3220 -52 568 317 48 63 chr4 23317641 23318106 -160970556 + L2 LINE L2 2682 3147 -166 24 32 0 0 chr4 23318242 23318273 -160970389 + AT_rich Low_complexity Low_complexity 1 31 0 2260 108 7 0 chr4 23319112 23319452 -160969210 + AluSc SINE Alu 1 342 0 245 298 61 26 chr4 23319475 23319589 -160969073 - L2 LINE L2 -5 3308 3191 197 259 62 49 chr4 23320129 23320210 -160968452 + L2 LINE L2 3187 3268 -4 219 336 25 25 chr4 23320231 23320350 -160968312 + L3 LINE CR1 1333 1451 -126 331 247 0 43 chr4 23321733 23321826 -160966836 - L1MC4 LINE L1 -1340 6702 6614 330 153 0 0 chr4 23321832 23321891 -160966771 + (TA)n Simple_repeat Simple_repeat 1 59 0 1817 154 42 0 chr4 23321891 23322177 -160966485 - AluSx SINE Alu -14 298 1 201 259 0 0 chr4 23322428 23322482 -160966180 + CT-rich Low_complexity Low_complexity 3 56 0 241 278 0 0 chr4 23323066 23323120 -160965542 + CT-rich Low_complexity Low_complexity 1 54 0 406 306 77 21 chr4 23323604 23324074 -160964588 - L1ME4a LINE L1 -23 6098 5603 997 176 0 0 chr4 23324088 23324253 -160964409 + FRAM SINE Alu 1 164 -12 193 346 105 15 chr4 23324782 23324915 -160963747 - MIR3 SINE MIR -23 185 41 981 211 143 63 chr4 23325522 23325934 -160962728 - L1MD3 LINE L1 -167 7828 7384 251 159 29 43 chr4 23325949 23326018 -160962644 - MLT1F1 LTR MaLR -448 119 52 2435 91 0 0 chr4 23326473 23326781 -160961881 + AluSq SINE Alu 1 308 -5 201 175 0 0 chr4 23327120 23327160 -160961502 + (TTCA)n Simple_repeat Simple_repeat 3 42 0 339 321 30 8 chr4 23327294 23327425 -160961237 - MIR SINE MIR -12 250 117 330 217 0 0 chr4 23329756 23329825 -160958837 - MLT1A2 LTR MaLR 0 374 306 401 319 29 67 chr4 23330246 23330484 -160958178 - MIR SINE MIR -1 261 33 285 236 0 154 chr4 23330492 23330602 -160958060 - MER91B DNA MER1_type -10 180 88 433 200 59 0 chr4 23330620 23330705 -160957957 - MER91B DNA MER1_type -61 129 40 182 340 0 0 chr4 23330954 23331001 -160957661 - L2 LINE L2 -82 3190 3144 2142 179 65 7 chr4 23331953 23332356 -160956306 + MSTB LTR MaLR 1 426 0 811 301 4 4 chr4 23332963 23333192 -160955470 + MIR SINE MIR 34 262 0 2027 125 7 0 chr4 23333978 23334259 -160954403 + AluSp SINE Alu 3 285 -28 21 0 0 0 chr4 23334780 23334801 -160953861 + AT_rich Low_complexity Low_complexity 1 21 0 331 347 41 34 chr4 23334917 23335064 -160953598 + L2 LINE L2 3125 3272 0 721 256 30 47 chr4 23335612 23335846 -160952816 - MIR SINE MIR -12 250 21 264 292 158 33 chr4 23336043 23336283 -160952379 + L2 LINE L2 3044 3313 0 216 0 0 0 chr4 23336411 23336435 -160952227 + (A)n Simple_repeat Simple_repeat 1 24 0 2272 118 0 13 chr4 23336699 23337005 -160951657 + AluSx SINE Alu 1 302 -10 380 276 0 86 chr4 23338674 23338837 -160949825 + MIR SINE MIR 25 173 -89 221 258 15 0 chr4 23338887 23338953 -160949709 + (TGAA)n Simple_repeat Simple_repeat 2 68 0 201 305 23 62 chr4 23339280 23339408 -160949254 + L3b LINE CR1 1295 1417 -166 352 194 0 0 chr4 23339543 23339605 -160949057 - Alu SINE Alu 0 302 241 191 203 68 51 chr4 23339738 23339797 -160948865 - L2 LINE L2 0 3272 3213 527 197 16 25 chr4 23340740 23340862 -160947800 - MER53 DNA DNA -68 121 1 218 356 48 19 chr4 23341138 23341242 -160947420 - L2 LINE L2 -38 3234 3128 997 181 62 0 chr4 23341305 23341515 -160947147 + L1MA9 LINE L1 6058 6280 -32 2147 101 51 3 chr4 23341942 23342238 -160946424 - AluSg SINE Alu 0 310 1 201 339 122 17 chr4 23342487 23342602 -160946060 - L2 LINE L2 0 3272 3146 2042 134 0 0 chr4 23344734 23345026 -160943636 - AluSx SINE Alu -20 292 1 242 277 109 20 chr4 23345348 23345449 -160943213 + L2 LINE L2 3155 3264 -8 425 329 108 18 chr4 23346398 23346620 -160942042 + MIR SINE MIR 20 261 -1 264 358 0 0 chr4 23346669 23346736 -160941926 - MIR SINE MIR -105 103 37 2423 78 0 7 chr4 23346755 23347063 -160941599 + AluY SINE Alu 1 306 -5 2112 121 0 0 chr4 23347074 23347384 -160941278 + AluSx SINE Alu 1 310 0 1842 240 150 21 chr4 23347603 23348178 -160940484 - MLT1E1 LTR MaLR -4 650 2 494 232 46 46 chr4 23348315 23348466 -160940196 - L2 LINE L2 0 3313 3163 294 238 159 24 chr4 23352268 23352394 -160936268 - L2 LINE L2 -12 3301 3159 336 253 0 0 chr4 23352586 23352661 -160936001 - MIR SINE MIR -10 252 178 363 297 51 7 chr4 23352689 23352827 -160935835 + L2 LINE L2 3170 3313 0 333 305 13 58 chr4 23352838 23352995 -160935667 - MIR SINE MIR -63 145 2 304 299 19 78 chr4 23353209 23353363 -160935299 + MIR SINE MIR 67 211 -51 920 128 0 8 chr4 23353542 23353675 -160934987 + AluSx SINE Alu 1 132 -180 1107 137 0 23 chr4 23353712 23353887 -160934775 + AluSx SINE Alu 120 290 -20 2479 82 99 6 chr4 23354065 23354408 -160934254 - THE1C LTR MaLR 0 375 1 405 0 0 0 chr4 23354755 23354800 -160933862 + (CA)n Simple_repeat Simple_repeat 1 45 0 345 47 0 0 chr4 23355115 23355158 -160933504 + (CA)n Simple_repeat Simple_repeat 2 44 0 251 235 130 7 chr4 23355358 23355476 -160933186 - MIR SINE MIR -46 216 2 380 264 245 6 chr4 23355492 23355651 -160933011 + MIR SINE MIR 66 262 0 21 36 0 0 chr4 23357660 23357688 -160930974 + AT_rich Low_complexity Low_complexity 1 28 0 253 266 0 43 chr4 23358053 23358147 -160930515 - L1MC4 LINE L1 -1339 6703 6614 333 0 0 0 chr4 23358150 23358187 -160930475 + (TG)n Simple_repeat Simple_repeat 2 38 0 2273 96 14 0 chr4 23358192 23358483 -160930179 - AluSx SINE Alu -17 295 1 411 320 36 32 chr4 23358491 23358741 -160929921 - L1MC4 LINE L1 -360 5810 5589 21 0 0 0 chr4 23359875 23359896 -160928766 + AT_rich Low_complexity Low_complexity 1 21 0 799 296 4 4 chr4 23360422 23360648 -160928014 - MIR SINE MIR 0 262 37 2343 90 3 6 chr4 23360967 23361279 -160927383 - AluSq SINE Alu -2 311 1 228 275 175 50 chr4 23361646 23361886 -160926776 + L2 LINE L2 3044 3313 0 225 0 0 0 chr4 23362014 23362039 -160926623 + (A)n Simple_repeat Simple_repeat 1 25 0 317 285 31 39 chr4 23363075 23363207 -160925455 + MIR3 SINE MIR 49 181 -27 280 302 12 0 chr4 23363906 23363992 -160924670 - MER117 DNA MER1_type -106 91 5 7814 92 4 29 chr4 23364040 23365900 -160922762 - L1PA7 LINE L1 0 6154 4316 5999 44 0 1 chr4 23365900 23366574 -160922088 - L1PA6 LINE L1 -5 6149 5472 27118 114 51 7 chr4 23366576 23370704 -160917958 - L1PA7 LINE L1 -1823 4323 11 673 252 1 36 chr4 23371486 23371691 -160916971 - MLT1E LTR MaLR -359 196 1 341 311 1 23 chr4 23371695 23371807 -160916855 + MIR SINE MIR 56 165 -43 198 103 0 0 chr4 23371833 23371862 -160916800 + (ATG)n Simple_repeat Simple_repeat 2 30 0 516 245 77 0 chr4 23372548 23372691 -160915971 - MIR SINE MIR -38 224 71 349 264 62 23 chr4 23373143 23373272 -160915390 + MIR SINE MIR 75 208 -54 399 260 114 8 chr4 23373788 23373911 -160914751 - L2 LINE L2 0 3313 3178 369 338 14 7 chr4 23374214 23374359 -160914303 - L2 LINE L2 -447 2867 2722 326 331 31 0 chr4 23374740 23374870 -160913792 + MIR SINE MIR 103 236 -26 199 54 54 0 chr4 23374889 23374926 -160913736 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 905 138 0 0 chr4 23374948 23375078 -160913584 + FLAM_C SINE Alu 6 135 -8 336 278 75 29 chr4 23375098 23375271 -160913391 - L1MA9 LINE L1 -48 6264 6084 213 39 0 0 chr4 23375552 23375578 -160913084 + (TG)n Simple_repeat Simple_repeat 2 27 0 2115 106 3 0 chr4 23375706 23376024 -160912638 - AluSx SINE Alu 0 319 1 417 274 53 0 chr4 23376195 23376308 -160912354 - L2 LINE L2 -5 3308 3190 194 250 105 13 chr4 23376696 23376772 -160911890 + L2 LINE L2 2708 2790 -524 209 191 0 21 chr4 23376984 23377031 -160911631 - L2 LINE L2 0 3313 3268 453 83 125 14 chr4 23377305 23377377 -160911285 + MADE1 DNA Mariner 1 80 0 1574 195 7 24 chr4 23377485 23377783 -160910879 + AluJo SINE Alu 5 297 -15 368 367 8 0 chr4 23379149 23379269 -160909393 - L2 LINE L2 -40 3232 3112 2287 122 91 49 chr4 23380189 23380598 -160908064 - MSTA LTR MaLR -2 426 1 227 167 42 0 chr4 23380764 23380812 -160907850 + L1MC4 LINE L1 6654 6703 -1339 232 233 0 0 chr4 23380814 23380857 -160907805 + (CA)n Simple_repeat Simple_repeat 2 44 0 329 343 32 95 chr4 23380858 23381019 -160907643 - L2 LINE L2 0 3272 3103 345 244 89 44 chr4 23381019 23381199 -160907463 + MER5A DNA MER1_type 2 189 0 329 343 32 95 chr4 23381199 23381407 -160907255 - L2 LINE L2 -169 3103 2926 26 0 0 0 chr4 23383021 23383047 -160905615 + AT_rich Low_complexity Low_complexity 1 26 0 389 261 149 27 chr4 23383090 23383278 -160905384 - L2 LINE L2 0 3313 3103 612 289 15 5 chr4 23383299 23383500 -160905162 - MIR SINE MIR -50 212 10 22 0 0 0 chr4 23383573 23383595 -160905067 + AT_rich Low_complexity Low_complexity 1 22 0 26546 129 14 28 chr4 23383598 23384247 -160904415 - L1PA8A LINE L1 -4 6442 5786 2846 10 0 0 chr4 23384247 23384551 -160904111 - AluYa5 SINE Alu -7 304 1 26546 129 14 28 chr4 23384551 23390394 -160898268 - L1PA8A LINE L1 -660 5786 1 198 0 0 0 chr4 23391111 23391133 -160897529 + (T)n Simple_repeat Simple_repeat 1 22 0 183 338 142 20 chr4 23391505 23391653 -160897009 - L2 LINE L2 0 3272 3107 604 314 16 0 chr4 23391702 23391890 -160896772 - MIR SINE MIR -21 241 51 21 0 0 0 chr4 23393895 23393916 -160894746 + AT_rich Low_complexity Low_complexity 1 21 0 2082 215 60 14 chr4 23394600 23395083 -160893579 + MLT1D LTR MaLR 1 505 0 302 266 0 0 chr4 23395223 23395287 -160893375 - MLT1K LTR MaLR 0 588 525 198 103 0 0 chr4 23395290 23395319 -160893343 + (A)n Simple_repeat Simple_repeat 1 29 0 998 265 57 60 chr4 23395562 23396067 -160892595 - MLT1G1 LTR MaLR -5 590 45 21 36 0 0 chr4 23397083 23397111 -160891551 + AT_rich Low_complexity Low_complexity 1 28 0 183 204 0 0 chr4 23400669 23400718 -160887944 + T-rich Low_complexity Low_complexity 1 49 0 210 37 0 0 chr4 23401651 23401678 -160886984 + (TG)n Simple_repeat Simple_repeat 2 28 0 * 408 40 0 0 chr4 23401677 23401727 -160886935 + (TA)n Simple_repeat Simple_repeat 1 50 0 2826 10 0 3 chr4 23402799 23403109 -160885553 + AluYb8 SINE Alu 1 309 -9 322 335 139 6 chr4 23403276 23403434 -160885228 + MIR SINE MIR 8 186 -76 333 269 0 37 chr4 23403948 23404056 -160884606 + MLT1H LTR MaLR 59 162 -387 2981 180 63 12 chr4 23404407 23404996 -160883666 + L1MB8 LINE L1 5551 6169 -9 258 314 153 16 chr4 23405544 23405668 -160882994 + L2 LINE L2 3127 3267 -5 243 311 61 44 chr4 23405678 23405832 -160882830 - MIR SINE MIR -60 148 35 230 0 0 32 chr4 23406943 23406974 -160881688 + (GA)n Simple_repeat Simple_repeat 1 30 0 446 200 285 38 chr4 23407117 23407288 -160881374 + MIR SINE MIR 34 245 -17 859 271 20 24 chr4 23407644 23407891 -160880771 + MIR SINE MIR 17 262 0 210 329 14 0 chr4 23407937 23408007 -160880655 - L2 LINE L2 -1 3312 3242 1581 194 18 0 chr4 23409503 23409786 -160878876 - AluJo SINE Alu -19 293 6 2585 50 0 3 chr4 23413441 23413744 -160874918 - AluY SINE Alu -9 302 1 2861 214 59 24 chr4 23413970 23414733 -160873929 + Charlie5 DNA MER1_type 1 790 -1822 378 185 0 0 chr4 23414762 23414827 -160873835 + Charlie5 DNA MER1_type 2519 2583 -29 769 321 138 18 chr4 23414898 23415281 -160873381 + L2 LINE L2 2548 2976 -338 610 242 45 22 chr4 23416066 23416244 -160872418 - Charlie8 DNA MER1_type -2233 184 3 413 299 43 6 chr4 23416266 23416430 -160872232 - MIR SINE MIR -6 256 87 219 114 0 0 chr4 23416523 23416558 -160872104 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 244 230 0 60 chr4 23417137 23417237 -160871425 + L1MC4 LINE L1 6610 6703 -1339 578 189 45 0 chr4 23417524 23417635 -160871027 + MER20 DNA MER1_type 1 116 -103 190 288 14 129 chr4 23417851 23417990 -160870672 + MIR SINE MIR 75 197 -65 201 133 0 0 chr4 23418013 23418043 -160870619 + (CCA)n Simple_repeat Simple_repeat 2 31 0 371 276 0 0 chr4 23418091 23418178 -160870484 - L2 LINE L2 0 3272 3186 877 196 103 14 chr4 23418925 23419139 -160869523 + MIR SINE MIR 9 241 -21 230 279 164 25 chr4 23419338 23419460 -160869202 + L3b LINE CR1 1322 1460 -123 2403 138 11 27 chr4 23420070 23420440 -160868222 + THE1B LTR MaLR 1 364 0 1146 209 5 14 chr4 23420791 23421001 -160867661 + MER63A DNA MER1_type 3 210 0 180 312 46 73 chr4 23421135 23421244 -160867418 + L2 LINE L2 3155 3260 -12 2213 170 28 0 chr4 23421612 23421965 -160866697 + MLT1A1 LTR MaLR 3 365 0 2329 103 0 6 chr4 23422798 23423109 -160865553 - AluSc SINE Alu 0 309 1 1458 195 53 55 chr4 23423247 23423688 -160864974 + MLT1C LTR MaLR 13 498 -7 291 266 179 6 chr4 23424914 23425054 -160863608 - MIR SINE MIR -78 184 16 235 239 28 14 chr4 23425240 23425311 -160863351 + MER117 DNA MER1_type 72 143 -54 345 217 31 85 chr4 23425518 23425647 -160863015 - MER112 DNA MER1_type -6 254 133 239 262 163 74 chr4 23425853 23426055 -160862607 - L3 LINE CR1 -255 1322 1103 236 231 15 15 chr4 23426093 23426158 -160862504 - MIR SINE MIR 0 262 198 364 308 52 44 chr4 23426357 23426618 -160862044 - MLT1K LTR MaLR -243 345 13 335 314 167 0 chr4 23426635 23426791 -160861871 - MIR SINE MIR -80 182 1 370 307 12 48 chr4 23427052 23427218 -160861444 - MIR SINE MIR -61 201 42 927 234 11 0 chr4 23427408 23427596 -160861066 + MER58A DNA MER1_type 35 224 0 639 296 24 24 chr4 23428132 23428345 -160860317 + MIR SINE MIR 50 262 0 193 263 35 0 chr4 23428345 23428402 -160860260 - MIR SINE MIR -13 249 191 191 250 197 0 chr4 23428821 23428897 -160859765 + MIR SINE MIR 122 212 -50 594 307 22 26 chr4 23429573 23429801 -160858861 - MIR SINE MIR -34 228 2 180 77 0 0 chr4 23430297 23430323 -160858339 + (CCTG)n Simple_repeat Simple_repeat 2 27 0 * 554 191 25 29 chr4 23430320 23430561 -160858101 + CT-rich Low_complexity Low_complexity 1 240 0 1056 135 43 11 chr4 23431137 23431322 -160857340 + MER20 DNA MER1_type 24 214 -5 233 290 89 40 chr4 23432024 23432148 -160856514 - MIR SINE MIR -98 164 35 195 182 68 0 chr4 23432192 23432236 -160856426 + L2 LINE L2 3219 3265 -7 288 91 0 0 chr4 23432280 23432324 -160856338 + (CA)n Simple_repeat Simple_repeat 1 44 0 1186 202 32 12 chr4 23432528 23432775 -160855887 - L1MD2 LINE L1 -1 6358 6107 236 329 61 12 chr4 23432940 23433022 -160855640 - L2 LINE L2 -81 3191 3106 21 0 0 0 chr4 23433071 23433092 -160855570 + AT_rich Low_complexity Low_complexity 1 21 0 204 243 0 86 chr4 23433934 23434004 -160854658 - L2 LINE L2 -21 3292 3229 188 239 75 88 chr4 23434262 23434421 -160854241 - L2 LINE L2 -216 3056 2900 * 288 291 25 82 chr4 23434418 23434576 -160854086 + MIR SINE MIR 36 184 -78 362 121 15 0 chr4 23436710 23436776 -160851886 + GA-rich Low_complexity Low_complexity 2 68 0 739 210 55 45 chr4 23436828 23437028 -160851634 - MIR SINE MIR -8 254 53 1305 247 60 11 chr4 23437390 23437738 -160850924 + MLT1A1 LTR MaLR 1 365 0 532 332 59 13 chr4 23437888 23438126 -160850536 - MIR SINE MIR -3 259 11 1813 257 83 57 chr4 23438386 23438985 -160849677 + MLT1E3 LTR MaLR 1 615 -9 555 69 0 0 chr4 23439041 23439113 -160849549 - AluY SINE Alu -5 306 235 1309 77 0 6 chr4 23439122 23439292 -160849370 - AluY SINE Alu -142 169 1 296 351 104 19 chr4 23440832 23440986 -160847676 + MIR3 SINE MIR 35 201 -7 972 231 77 5 chr4 23442252 23442460 -160846202 - MER58A DNA MER1_type 0 224 2 312 335 31 25 chr4 23442651 23442812 -160845850 + MIR3 SINE MIR 24 185 -23 347 56 19 0 chr4 23442815 23442869 -160845793 + (TTTTG)n Simple_repeat Simple_repeat 2 56 0 223 287 160 0 chr4 23442931 23443025 -160845637 + MIR SINE MIR 98 206 -56 2006 143 0 10 chr4 23443210 23443503 -160845159 + AluSx SINE Alu 1 290 -22 255 273 39 13 chr4 23443804 23443881 -160844781 - MIR SINE MIR -98 164 86 180 97 0 0 chr4 23444169 23444200 -160844462 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 1426 197 59 36 chr4 23444618 23444975 -160843687 + MLT1A1 LTR MaLR 1 501 -4 223 316 29 79 chr4 23445486 23445625 -160843037 - MIR SINE MIR -127 135 4 21 0 0 0 chr4 23446018 23446039 -160842623 + AT_rich Low_complexity Low_complexity 1 21 0 603 262 134 73 chr4 23446352 23446776 -160841886 - LTR33A LTR ERVL 0 523 74 424 299 67 0 chr4 23447004 23447138 -160841524 + MIR SINE MIR 46 188 -74 330 164 0 0 chr4 23447692 23447747 -160840915 + AluSq/x SINE Alu 71 125 -178 224 67 0 83 chr4 23447856 23447916 -160840746 + (GGAA)n Simple_repeat Simple_repeat 3 57 0 409 275 74 62 chr4 23448298 23448542 -160840120 - MIR SINE MIR -9 253 7 305 303 10 10 chr4 23448578 23448677 -160839985 - L2 LINE L2 -2 3270 3172 1752 100 11 23 chr4 23450652 23450913 -160837749 - AluSg SINE Alu -5 305 48 262 338 47 14 chr4 23452046 23452194 -160836468 + MIR SINE MIR 110 262 0 527 82 39 12 chr4 23452562 23452796 -160835866 + AluSx SINE Alu 1 308 -1 1362 225 15 18 chr4 23452901 23453234 -160835428 - MER58B DNA MER1_type -1 340 9 479 216 30 52 chr4 23454116 23454250 -160834412 - MER5A DNA MER1_type -22 167 37 2201 68 17 27 chr4 23454449 23454574 -160834088 + AluY SINE Alu 1 126 -185 333 0 0 0 chr4 23454574 23454611 -160834051 + (CA)n Simple_repeat Simple_repeat 2 38 0 2201 68 17 27 chr4 23454611 23454780 -160833882 + AluY SINE Alu 126 292 -19 310 264 65 32 chr4 23455046 23455201 -160833461 - L2 LINE L2 -58 3255 3096 240 302 12 35 chr4 23455213 23455299 -160833363 + L2 LINE L2 3230 3313 0 752 286 88 36 chr4 23455348 23455959 -160832703 - L1MC4a LINE L1 -1910 5898 5256 478 139 0 50 chr4 23457207 23457273 -160831389 + MER53 DNA DNA 6 67 -122 1270 169 8 37 chr4 23457273 23457516 -160831146 - MER46A DNA MER2_type 0 236 1 478 139 0 50 chr4 23457516 23457550 -160831112 + MER53 DNA DNA 67 101 -88 22 35 0 0 chr4 23457655 23457684 -160830978 + AT_rich Low_complexity Low_complexity 1 29 0 182 88 0 29 chr4 23457831 23457865 -160830797 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 646 250 12 12 chr4 23458263 23458423 -160830239 - MIR SINE MIR -52 210 51 430 337 74 10 chr4 23458771 23458973 -160829689 - MIR SINE MIR 0 262 48 438 306 100 18 chr4 23459005 23459234 -160829428 + MIR SINE MIR 14 261 -1 293 309 12 0 chr4 23459238 23459319 -160829343 + (CTA)n Simple_repeat Simple_repeat 1 82 0 223 338 71 26 chr4 23460178 23460332 -160828330 + L2 LINE L2 2924 3084 -188 369 347 99 51 chr4 23460357 23460691 -160827971 - L2 LINE L2 -18 3254 2905 181 343 0 15 chr4 23460841 23460908 -160827754 + MIR SINE MIR 66 131 -131 505 241 9 80 chr4 23462537 23462761 -160825901 + MLT1H LTR MaLR 23 230 -319 237 311 22 11 chr4 23463013 23463103 -160825559 + L2 LINE L2 3175 3265 -48 1776 198 3 14 chr4 23463489 23463864 -160824798 + MLT1A1 LTR MaLR 1 365 0 242 324 101 34 chr4 23463984 23464132 -160824530 - L2 LINE L2 -177 3095 2938 635 208 8 16 chr4 23465506 23465631 -160823031 + FLAM_A SINE Alu 1 124 -9 230 346 39 24 chr4 23465881 23466008 -160822654 - L2 LINE L2 -5 3267 3139 303 301 68 0 chr4 23466380 23466483 -160822179 + L2 LINE L2 3203 3312 -1 240 281 67 56 chr4 23466751 23466840 -160821822 + L2 LINE L2 3183 3272 0 293 261 20 149 chr4 23466914 23467209 -160821453 + MER102b DNA MER1_type 37 293 -48 482 262 40 0 chr4 23468822 23468971 -160819691 - L2 LINE L2 -557 2757 2603 3654 183 56 28 chr4 23468981 23469592 -160819070 + L1MB7 LINE L1 4725 5318 -866 2195 112 0 0 chr4 23469592 23469887 -160818775 + AluSg SINE Alu 14 308 -2 3654 183 56 28 chr4 23469887 23470681 -160817981 + L1MB7 LINE L1 5318 6179 -5 374 324 22 50 chr4 23470825 23471004 -160817658 - MIR SINE MIR -8 254 81 273 304 152 27 chr4 23471755 23471867 -160816795 + MIR3 SINE MIR 68 193 -15 1174 234 97 25 chr4 23471904 23472335 -160816327 - MLT1C LTR MaLR -5 462 1 497 256 74 17 chr4 23472335 23472511 -160816151 - MIR SINE MIR -3 259 74 187 179 26 0 chr4 23472652 23472691 -160815971 + L2 LINE L2 3274 3313 0 24 67 0 0 chr4 23474284 23474329 -160814333 + AT_rich Low_complexity Low_complexity 1 45 0 21 36 0 0 chr4 23474399 23474427 -160814235 + AT_rich Low_complexity Low_complexity 1 28 0 282 56 0 0 chr4 23474597 23474633 -160814029 + (TAA)n Simple_repeat Simple_repeat 2 37 0 260 348 29 65 chr4 23475576 23475714 -160812948 - L2 LINE L2 -1 3271 3139 21 0 0 0 chr4 23475714 23475735 -160812927 + AT_rich Low_complexity Low_complexity 1 21 0 304 296 72 0 chr4 23476069 23476221 -160812441 - MER103 DNA DNA 0 166 4 432 108 0 54 chr4 23477047 23477121 -160811541 + MSTD LTR MaLR 4 73 -323 244 267 40 0 chr4 23477130 23477205 -160811457 + MIR SINE MIR 184 261 -1 416 268 0 0 chr4 23477270 23477367 -160811295 - MIR SINE MIR -70 192 96 1306 195 21 89 chr4 23477539 23477965 -160810697 + MLT2C1 LTR ERVL 1 397 0 578 313 52 17 chr4 23478279 23478509 -160810153 + L3 LINE CR1 1331 1568 -9 21 0 0 0 chr4 23479397 23479418 -160809244 + AT_rich Low_complexity Low_complexity 1 21 0 354 302 0 65 chr4 23479434 23479573 -160809089 + MIR3 SINE MIR 3 132 -76 496 231 88 38 chr4 23479628 23479788 -160808874 - MIR SINE MIR -46 216 49 222 294 29 0 chr4 23480218 23480286 -160808376 - L2 LINE L2 -359 2954 2885 473 182 0 0 chr4 23480286 23480363 -160808299 + Tigger5 DNA MER2_type 1 77 -2246 367 218 13 0 chr4 23480364 23480442 -160808220 - Tigger5 DNA MER2_type -3 2320 2242 * 399 210 12 0 chr4 23480432 23480513 -160808149 + Tigger5 DNA MER2_type 2242 2323 0 1738 197 55 13 chr4 23480626 23481006 -160807656 - MSTD LTR MaLR 0 396 1 628 342 53 38 chr4 23481018 23481524 -160807138 + L2 LINE L2 2802 3313 0 186 174 275 14 chr4 23481882 23481951 -160806711 + L2 LINE L2 3185 3271 -1 215 206 43 22 chr4 23482695 23482787 -160805875 + (TA)n Simple_repeat Simple_repeat 1 94 0 29 60 0 0 chr4 23482811 23482861 -160805801 + AT_rich Low_complexity Low_complexity 1 50 0 252 341 44 22 chr4 23483018 23483153 -160805509 + MIR SINE MIR 52 189 -73 287 305 92 67 chr4 23484606 23484770 -160803892 - MIR3 SINE MIR -4 204 37 237 183 0 33 chr4 23485141 23485201 -160803461 + (TAGA)n Simple_repeat Simple_repeat 2 59 0 357 242 24 32 chr4 23487304 23487428 -160801234 - MIR SINE MIR -48 214 92 208 373 25 8 chr4 23487640 23487758 -160800904 - MIR SINE MIR -84 178 59 357 141 0 0 chr4 23487954 23488025 -160800637 + (GAATG)n Simple_repeat Simple_repeat 2 72 0 465 176 44 0 chr4 23488086 23488177 -160800485 + MLT1A2 LTR MaLR 1 95 -279 209 0 98 0 chr4 23589507 23589548 -160699114 + (TAATG)n Simple_repeat Simple_repeat 1 45 0 198 256 275 25 chr4 23590068 23590228 -160698434 + MIR3 SINE MIR 2 201 -7 228 330 64 28 chr4 23590375 23590484 -160698178 - L2 LINE L2 -6 3307 3195 387 275 174 0 chr4 23592155 23592304 -160696358 + MIR SINE MIR 20 194 -68 260 323 55 92 chr4 23592306 23592470 -160696192 - L2 LINE L2 0 3272 3115 213 325 86 60 chr4 23592710 23593107 -160695555 - L2 LINE L2 -584 2730 2324 372 262 271 21 chr4 23593779 23594115 -160694547 - L2 LINE L2 -985 2329 1910 251 371 57 0 chr4 23594961 23595066 -160693596 - L2 LINE L2 -20 3252 3142 2518 111 19 33 chr4 23597005 23597373 -160691289 + THE1B LTR MaLR 1 363 -1 304 159 48 0 chr4 23597427 23597490 -160691172 - L1MC4a LINE L1 -1781 6027 5962 284 0 28 0 chr4 23597490 23597526 -160691136 + (TA)n Simple_repeat Simple_repeat 1 37 0 883 250 37 16 chr4 23597755 23597999 -160690663 - L1MC4a LINE L1 -1883 5925 5677 273 326 20 10 chr4 23599157 23599337 -160689325 + MER93b-int LTR ERV1 6579 6655 -146 453 220 34 14 chr4 23599670 23599812 -160688850 + MER93b LTR ERV1 61 214 -188 1211 180 3 95 chr4 23599829 23600123 -160688539 - AluJo SINE Alu -16 296 30 744 189 31 19 chr4 23600127 23600286 -160688376 + MER93a LTR ERV1 242 402 0 1671 172 31 3 chr4 23600416 23600706 -160687956 - AluJb SINE Alu -14 298 1 3355 87 21 7 chr4 23601140 23601577 -160687085 - MLT2A1 LTR ERVL -1 443 1 577 290 70 14 chr4 23601888 23602102 -160686560 + MIR SINE MIR 37 262 0 211 292 67 50 chr4 23602344 23602464 -160686198 + L2 LINE L2 2943 3064 -208 2267 107 0 0 chr4 23602871 23603197 -160685465 - AluSx SINE Alu 0 326 1 982 227 64 55 chr4 23603521 23603882 -160684780 - LTR16A1 LTR ERVL 0 457 94 280 361 161 4 chr4 23605955 23606185 -160682477 - L2 LINE L2 -562 2752 2487 245 363 50 61 chr4 23607208 23607460 -160681202 + L2 LINE L2 1851 2099 -1215 2570 59 0 0 chr4 23607460 23607765 -160680897 - AluY SINE Alu -6 305 1 245 363 50 61 chr4 23607765 23607889 -160680773 + L2 LINE L2 2099 2223 -1091 209 169 13 52 chr4 23608067 23608144 -160680518 + (CATATA)n Simple_repeat Simple_repeat 1 74 0 230 315 22 22 chr4 23608165 23608257 -160680405 + MER5B DNA MER1_type 57 148 -30 698 140 9 0 chr4 23608269 23608376 -160680286 - L1PB1 LINE L1 -5 6146 6039 411 372 36 65 chr4 23608425 23608902 -160679760 + L2 LINE L2 2777 3243 -29 1418 305 173 13 chr4 23609009 23609937 -160678725 + L2 LINE L2 2232 3311 -2 2063 122 0 17 chr4 23611053 23611372 -160677290 - AluSq SINE Alu 0 313 1 26 0 0 0 chr4 23611740 23611766 -160676896 + AT_rich Low_complexity Low_complexity 1 26 0 2062 159 140 8 chr4 23611782 23612160 -160676502 - MSTA LTR MaLR 0 428 1 438 243 195 12 chr4 23613133 23613302 -160675360 - MIR SINE MIR -10 252 53 503 224 0 40 chr4 23613335 23613460 -160675202 + L2 LINE L2 2210 2329 -985 664 126 176 0 chr4 23613469 23613588 -160675074 - MSTA LTR MaLR -42 386 247 824 276 148 35 chr4 23613858 23614367 -160674295 + L2 LINE L2 2740 3313 0 357 231 115 0 chr4 23614564 23614668 -160673994 - L2 LINE L2 -7 3306 3191 449 369 20 0 chr4 23615087 23615285 -160673377 + MIR SINE MIR 34 235 -27 330 182 16 41 chr4 23615290 23615411 -160673251 + (TAA)n Simple_repeat Simple_repeat 2 119 0 251 232 18 0 chr4 23615500 23615556 -160673106 + L2 LINE L2 3210 3266 -6 22 35 0 0 chr4 23616578 23616607 -160672055 + AT_rich Low_complexity Low_complexity 1 29 0 269 182 0 18 chr4 23616915 23616970 -160671692 - MLT2D LTR ERVL 0 520 467 223 174 0 0 chr4 23616973 23617019 -160671643 + (TATATG)n Simple_repeat Simple_repeat 3 48 0 345 75 0 0 chr4 23617019 23617072 -160671590 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 1821 210 17 11 chr4 23617073 23617430 -160671232 - MLT2D LTR ERVL -55 359 1 233 217 152 11 chr4 23617477 23617569 -160671093 + L3 LINE CR1 1129 1233 -344 585 114 13 0 chr4 23617578 23617657 -160671005 - MADE1 DNA Mariner 0 80 1 192 77 0 0 chr4 23618282 23618308 -160670354 + (TA)n Simple_repeat Simple_repeat 2 27 0 259 130 0 0 chr4 23618322 23618368 -160670294 - LTR66 LTR ERVL -171 439 394 2789 205 106 75 chr4 23618705 23618938 -160669724 - L1ME2 LINE L1 -45 6119 5895 2184 119 3 6 chr4 23618938 23619249 -160669413 - AluSx SINE Alu 0 312 3 2789 205 106 75 chr4 23619249 23620626 -160668036 - L1ME2 LINE L1 -269 5895 4475 333 68 0 0 chr4 23620668 23620712 -160667950 + (CA)n Simple_repeat Simple_repeat 1 44 0 311 321 37 25 chr4 23621793 23621955 -160666707 - MIR3 SINE MIR -5 203 40 1793 137 23 37 chr4 23622375 23622674 -160665988 + AluSx SINE Alu 1 295 -17 22 35 0 0 chr4 23622679 23622708 -160665954 + AT_rich Low_complexity Low_complexity 1 29 0 750 264 77 34 chr4 23623089 23623596 -160665066 + L1M4 LINE L1 2786 3314 -2832 291 28 0 0 chr4 23623759 23623795 -160664867 + (CA)n Simple_repeat Simple_repeat 2 37 0 268 313 68 11 chr4 23623873 23624049 -160664613 + L1M4 LINE L1 3588 3773 -2373 1352 255 58 23 chr4 23624507 23624934 -160663728 + MER87 LTR ERV1 79 520 -21 337 240 31 70 chr4 23626028 23626157 -160662505 + MARNA DNA Mariner 371 494 -92 517 295 152 9 chr4 23626284 23626494 -160662168 - MIR SINE MIR -21 241 2 308 232 56 48 chr4 23626648 23626773 -160661889 - LTR67 LTR ERVL 0 557 432 282 29 0 0 chr4 23628111 23628146 -160660516 + (TG)n Simple_repeat Simple_repeat 2 36 0 297 248 137 34 chr4 23629277 23629394 -160659268 + MIR SINE MIR 118 246 -16 1808 150 85 78 chr4 23629545 23629932 -160658730 - MLT1B LTR MaLR 0 390 1 218 215 123 15 chr4 23630389 23630454 -160658208 + L2 LINE L2 3201 3272 0 221 0 35 0 chr4 23630520 23630549 -160658113 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1761 142 3 113 chr4 23630551 23630869 -160657793 - AluSx SINE Alu -19 283 1 440 273 91 0 chr4 23631458 23631601 -160657061 - MER58A DNA MER1_type 0 224 69 1939 170 167 14 chr4 23632125 23632496 -160656166 + MSTA LTR MaLR 1 428 0 10169 133 26 31 chr4 23632498 23634085 -160654577 + MSTA-int LTR MaLR 3 1580 0 1707 153 227 11 chr4 23634085 23634437 -160654225 + MSTA LTR MaLR 1 428 0 239 312 21 32 chr4 23634649 23634749 -160653913 - MER5A DNA MER1_type -26 163 54 354 248 89 57 chr4 23635530 23635687 -160652975 - LTR68 LTR ERV1 -578 162 1 874 211 75 20 chr4 23635976 23636175 -160652487 + MER63A DNA MER1_type 1 210 0 290 200 12 88 chr4 23636272 23636352 -160652310 + MLT1F1 LTR MaLR 44 117 -450 1145 247 32 7 chr4 23636358 23636641 -160652021 + L1MD3 LINE L1 7402 7691 -304 1624 133 70 17 chr4 23637171 23637471 -160651191 + MER49 LTR ERV1 1 316 -607 840 169 0 0 chr4 23637525 23637655 -160651007 - FLAM_C SINE Alu -12 131 2 3328 168 61 5 chr4 23637659 23638248 -160650414 + MER49 LTR ERV1 302 923 0 1767 128 3 85 chr4 23639048 23639354 -160649308 + MLT1C LTR MaLR 1 281 -186 2212 137 73 17 chr4 23639355 23639699 -160648963 + THE1B LTR MaLR 1 363 -1 8959 91 130 43 chr4 23639701 23641109 -160647553 + THE1B-int LTR MaLR 2 1531 -49 1008 188 66 5 chr4 23641109 23641150 -160647512 + MLT1C LTR MaLR 255 292 -175 1771 126 124 78 chr4 23641150 23641498 -160647164 + THE1B LTR MaLR 1 364 0 1008 188 66 5 chr4 23641498 23641672 -160646990 + MLT1C LTR MaLR 292 459 -8 755 301 93 43 chr4 23642279 23642969 -160645693 + L1M4 LINE L1 3840 4605 -1541 2302 97 0 7 chr4 23642969 23643278 -160645384 + AluSg SINE Alu 1 307 -3 755 301 93 43 chr4 23643278 23643675 -160644987 + L1M4 LINE L1 4605 4981 -1165 1281 171 9 5 chr4 23643690 23643907 -160644755 - AluJb SINE Alu -12 300 83 235 277 102 42 chr4 23643997 23644163 -160644499 + L1P5 LINE L1 5255 5430 -721 461 295 38 4 chr4 23644993 23645203 -160643459 - MIR SINE MIR -10 252 34 242 260 13 0 chr4 23645744 23645821 -160642841 + (TG)n Simple_repeat Simple_repeat 1 78 0 21 36 0 0 chr4 23646810 23646838 -160641824 + AT_rich Low_complexity Low_complexity 1 28 0 354 269 56 24 chr4 23646961 23647129 -160641533 - MIR SINE MIR -50 212 43 620 209 104 0 chr4 23647731 23647865 -160640797 - MIR SINE MIR -1 261 114 225 264 69 35 chr4 23647919 23647968 -160640694 + MIR SINE MIR 145 200 -62 329 244 26 0 chr4 23647968 23648046 -160640616 + MER116 DNA Mariner 1 80 0 225 264 69 35 chr4 23648046 23648083 -160640579 + MIR SINE MIR 200 234 -28 180 0 0 0 chr4 23648282 23648302 -160640360 + (TTA)n Simple_repeat Simple_repeat 2 21 0 182 279 25 101 chr4 23648547 23648626 -160640036 - MIR3 SINE MIR -22 186 114 627 326 32 65 chr4 23649400 23649771 -160638891 - L2 LINE L2 0 3272 2914 753 199 0 0 chr4 23649810 23649946 -160638716 + MER58A DNA MER1_type 9 144 0 191 206 0 0 chr4 23649990 23650024 -160638638 - MIR SINE MIR -111 151 118 474 236 28 82 chr4 23650460 23650642 -160638020 - MER113 DNA MER1_type? -5 516 345 724 266 73 34 chr4 23650644 23650693 -160637969 + MIR SINE MIR 10 56 -206 2310 206 56 23 chr4 23650693 23651213 -160637449 - MLT1F LTR MaLR -4 538 2 724 266 73 34 chr4 23651213 23651396 -160637266 + MIR SINE MIR 56 251 -11 235 180 20 40 chr4 23651616 23651666 -160636996 - MER5C DNA MER1_type -269 55 7 2263 104 10 0 chr4 23652454 23652752 -160635910 + AluSq SINE Alu 1 301 -12 1132 283 113 26 chr4 23652869 23653421 -160635241 + L1MC1 LINE L1 4 565 -5480 834 297 31 0 chr4 23653518 23653777 -160634885 + L1MC1 LINE L1 569 835 -5210 * 3129 204 157 19 chr4 23653775 23654135 -160634527 + L1MC1 LINE L1 1351 1660 -4904 302 0 26 0 chr4 23654135 23654173 -160634489 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 3129 204 157 19 chr4 23654173 23654190 -160634472 + L1MC1 LINE L1 1660 1673 -4891 8272 10 19 14 chr4 23654190 23655148 -160633514 - L1PA3 LINE L1 -2 6153 5195 3129 204 157 19 chr4 23655148 23655161 -160633501 + L1MC1 LINE L1 1673 1683 -4881 2082 113 0 7 chr4 23655161 23655467 -160633195 + AluSg SINE Alu 1 304 0 3129 204 157 19 chr4 23655467 23655974 -160632688 + L1MC1 LINE L1 1683 2377 -4187 4456 201 40 36 chr4 23655983 23657316 -160631346 + L1MC1 LINE L1 5406 6745 -6 748 181 93 21 chr4 23657322 23657515 -160631147 + L1MC3 LINE L1 7559 7765 -20 375 252 89 15 chr4 23657641 23657776 -160630886 - MIR SINE MIR -26 236 92 251 276 126 0 chr4 23657970 23658057 -160630605 + MIR SINE MIR 97 194 -68 201 196 0 0 chr4 23659151 23659207 -160629455 + GA-rich Low_complexity Low_complexity 2 57 0 720 158 0 0 chr4 23659209 23659380 -160629282 + (CA)n Simple_repeat Simple_repeat 2 172 0 180 135 0 0 chr4 23659425 23659462 -160629200 + (CA)n Simple_repeat Simple_repeat 2 38 0 509 185 0 6 chr4 23659489 23659551 -160629111 + (CA)n Simple_repeat Simple_repeat 2 63 -99 180 0 0 0 chr4 23659551 23659571 -160629091 + (GA)n Simple_repeat Simple_repeat 2 21 0 509 185 0 6 chr4 23659571 23659670 -160628992 + (CA)n Simple_repeat Simple_repeat 63 162 0 185 130 43 0 chr4 23659707 23659753 -160628909 + (CAGAGA)n Simple_repeat Simple_repeat 6 53 0 264 300 62 23 chr4 23659775 23659905 -160628757 + MLT1K LTR MaLR 420 554 -34 191 339 11 34 chr4 23660553 23660730 -160627932 - L2 LINE L2 -236 3036 2864 495 190 0 0 chr4 23660730 23660867 -160627795 + (TG)n Simple_repeat Simple_repeat 2 138 0 601 278 118 44 chr4 23661569 23661975 -160626687 + Charlie8 DNA MER1_type 107 542 -1875 2181 133 0 0 chr4 23662173 23662482 -160626180 - AluSx SINE Alu -3 309 1 391 235 87 60 chr4 23662743 23662829 -160625833 - MIR3 SINE MIR -5 203 110 2190 122 0 7 chr4 23662829 23663133 -160625529 + AluSx SINE Alu 1 302 -10 391 235 87 60 chr4 23663133 23663195 -160625467 - MIR3 SINE MIR -98 110 51 370 250 0 60 chr4 23663248 23663348 -160625314 + L2 LINE L2 3179 3272 0 219 326 44 15 chr4 23665284 23665419 -160623243 - MIR SINE MIR -96 166 28 254 229 0 0 chr4 23666099 23666147 -160622515 - L2 LINE L2 -12 3260 3213 619 328 124 14 chr4 23666181 23666529 -160622133 - L2 LINE L2 0 3313 2928 305 271 62 54 chr4 23666534 23666663 -160621999 - L2 LINE L2 0 3313 3184 1286 229 43 72 chr4 23666942 23667318 -160621344 + MLT1A1 LTR MaLR 1 365 0 244 325 74 35 chr4 23667473 23667676 -160620986 + MIR SINE MIR 47 257 -5 353 257 193 16 chr4 23667785 23667993 -160620669 - MIR SINE MIR -10 252 18 844 224 78 54 chr4 23668575 23668703 -160619959 - MLT1C LTR MaLR -160 307 184 2135 116 0 7 chr4 23668703 23669006 -160619656 - AluSx SINE Alu -11 301 1 844 224 78 54 chr4 23669006 23669172 -160619490 - MLT1C LTR MaLR -283 184 6 1703 156 23 44 chr4 23669221 23669617 -160619045 + L1MC3 LINE L1 7450 7990 -5 746 56 0 0 chr4 23669675 23669764 -160618898 - L1PA10 LINE L1 -9 6159 6071 186 313 0 0 chr4 23670028 23670092 -160618570 - L2 LINE L2 -289 2983 2920 549 261 25 6 chr4 23670323 23670480 -160618182 + MIR SINE MIR 102 261 -1 632 243 72 50 chr4 23670926 23671148 -160617514 + MIR SINE MIR 1 227 -35 400 375 48 8 chr4 23671321 23671572 -160617090 - L3 LINE CR1 -110 1467 1207 260 227 12 12 chr4 23673122 23673285 -160615377 + (TA)n Simple_repeat Simple_repeat 2 164 0 24 0 0 0 chr4 23673803 23673827 -160614835 + AT_rich Low_complexity Low_complexity 1 24 0 206 310 35 11 chr4 23674071 23674158 -160614504 + L2 LINE L2 3206 3294 -19 2225 99 0 10 chr4 23675132 23675435 -160613227 - AluY SINE Alu -11 300 1 1199 271 108 51 chr4 23675774 23676404 -160612258 + L1MC4a LINE L1 5315 5980 -1828 3187 171 12 10 chr4 23676419 23676938 -160611724 - MLT2B1 LTR ERVL 0 520 1 288 281 103 48 chr4 23677144 23677290 -160611372 - L2 LINE L2 -287 2985 2832 2509 120 11 25 chr4 23677929 23678296 -160610366 - THE1B LTR MaLR -2 362 1 343 342 38 13 chr4 23678365 23678523 -160610139 + MIR SINE MIR 64 225 -37 197 333 16 0 chr4 23678683 23678746 -160609916 + L2 LINE L2 3241 3304 -9 22 0 0 0 chr4 23678752 23678774 -160609888 + AT_rich Low_complexity Low_complexity 1 22 0 473 294 214 35 chr4 23679933 23680307 -160608355 + L2 LINE L2 2450 2890 -424 186 299 30 0 chr4 23680813 23680880 -160607782 + L2 LINE L2 3182 3250 -63 544 311 53 0 chr4 23680889 23681114 -160607548 + MIR SINE MIR 7 243 -19 301 314 119 63 chr4 23681193 23681445 -160607217 + L2 LINE L2 3006 3271 -1 568 271 85 17 chr4 23681696 23681873 -160606789 + MIR SINE MIR 25 213 -49 2652 291 115 37 chr4 23681903 23682573 -160606089 + HAL1 LINE L1 46 662 -1845 2195 102 3 10 chr4 23682573 23682896 -160605766 + AluSx SINE Alu 1 312 0 2652 291 115 37 chr4 23682896 23683915 -160604747 + HAL1 LINE L1 662 1868 -639 1387 247 27 28 chr4 23683923 23684637 -160604025 + L1MEc LINE L1 235 1106 -5290 478 359 89 46 chr4 23685028 23685421 -160603241 - L2 LINE L2 -36 3236 2827 265 332 89 21 chr4 23685529 23685719 -160602943 - L2 LINE L2 -685 2629 2427 387 329 107 48 chr4 23685804 23686300 -160602362 + L2 LINE L2 1196 1720 -1594 7073 138 5 15 chr4 23686844 23687961 -160600701 + HSMAR2 DNA Mariner 2 1107 -195 383 87 72 43 chr4 23687961 23688030 -160600632 - MLT1D LTR MaLR -378 127 57 324 250 14 0 chr4 23688040 23688112 -160600550 - L2 LINE L2 -9 3304 3232 1082 141 70 0 chr4 23688239 23688424 -160600238 + HSMAR2 DNA Mariner 1103 1300 -2 801 154 58 51 chr4 23688698 23688762 -160599900 - MLT1D LTR MaLR 0 505 443 180 0 0 0 chr4 23688762 23688782 -160599880 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 468 129 0 0 chr4 23688785 23688855 -160599807 - L1PA13 LINE L1 -11 6152 6083 801 154 58 51 chr4 23688855 23688942 -160599720 - MLT1D LTR MaLR -63 442 349 866 168 20 0 chr4 23688964 23689113 -160599549 - MLT1D LTR MaLR -326 179 28 212 328 225 30 chr4 23689282 23689584 -160599078 + L2 LINE L2 2910 3270 -2 508 321 23 5 chr4 23689785 23690000 -160598662 + LTR33 LTR ERVL 301 519 -2 204 288 0 41 chr4 23690131 23690204 -160598458 - MIR3 SINE MIR -3 205 136 293 240 93 0 chr4 23690320 23690395 -160598267 + MIR SINE MIR 119 200 -62 213 39 0 0 chr4 23691309 23691335 -160597327 + (TTCA)n Simple_repeat Simple_repeat 4 29 0 284 267 27 0 chr4 23691337 23691412 -160597250 - L2 LINE L2 -5 3308 3232 352 284 60 0 chr4 23691643 23691759 -160596903 + MIR SINE MIR 119 241 -21 1310 158 4 9 chr4 23691907 23692135 -160596527 + AluJb SINE Alu 86 312 0 357 24 0 0 chr4 23692279 23692321 -160596341 + (TA)n Simple_repeat Simple_repeat 2 43 0 2169 86 50 13 chr4 23692355 23692657 -160596005 + AluSp SINE Alu 1 313 0 22 0 0 0 chr4 23692703 23692725 -160595937 + AT_rich Low_complexity Low_complexity 1 22 0 1481 254 138 32 chr4 23692752 23693338 -160595324 - Charlie7 DNA MER1_type -1898 714 67 1201 272 59 26 chr4 23693474 23693970 -160594692 - L1ME3A LINE L1 -1 6169 5662 436 184 11 38 chr4 23693975 23694160 -160594502 + (TA)n Simple_repeat Simple_repeat 1 180 0 4013 269 117 36 chr4 23694631 23695649 -160593013 - L1ME3A LINE L1 -575 5589 4654 246 32 0 0 chr4 23695649 23695680 -160592982 + (TC)n Simple_repeat Simple_repeat 2 32 0 4013 269 117 36 chr4 23695680 23697653 -160591009 - L1ME3A LINE L1 -1510 4654 2329 832 165 0 0 chr4 23697653 23697786 -160590876 - FLAM_C SINE Alu 0 133 1 4013 269 117 36 chr4 23697786 23698026 -160590636 - L1ME3A LINE L1 -3835 2329 2110 796 203 71 71 chr4 23698150 23698326 -160590336 - LTR16A1 LTR ERVL -2 455 277 985 83 0 0 chr4 23698326 23698459 -160590203 - L1PA3 LINE L1 -3 6152 6020 796 203 71 71 chr4 23698459 23698548 -160590114 - LTR16A1 LTR ERVL -179 278 190 402 229 116 10 chr4 23698603 23698848 -160589814 - L1M LINE L1 -757 5389 5152 * 5450 84 18 17 chr4 23698847 23699518 -160589144 - L1PA10 LINE L1 -10 6158 5489 200 33 0 33 chr4 23699518 23699548 -160589114 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2118 115 0 7 chr4 23699548 23699834 -160588828 - AluSq SINE Alu -27 286 3 5450 84 18 17 chr4 23699834 23699993 -160588669 - L1PA10 LINE L1 -678 5490 5326 333 322 15 63 chr4 23700023 23700228 -160588434 - L1M4 LINE L1 -1005 5141 4947 288 229 8 102 chr4 23700231 23700349 -160588313 - MLT1E2 LTR MaLR -519 107 1 1524 230 42 121 chr4 23700503 23700702 -160587960 - MLT1D-int LTR MaLR -97 1274 1061 186 43 0 0 chr4 23700702 23700725 -160587937 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1524 230 42 121 chr4 23700725 23701194 -160587468 - MLT1D-int LTR MaLR -310 1061 659 2561 213 21 42 chr4 23701255 23701928 -160586734 - MLT1D-int LTR MaLR -711 660 2 1632 202 98 5 chr4 23701932 23702342 -160586320 - MLT1D LTR MaLR -3 502 55 2199 114 7 3 chr4 23702449 23702755 -160585907 - AluSx SINE Alu -5 307 1 29 47 0 0 chr4 23702764 23702807 -160585855 + AT_rich Low_complexity Low_complexity 1 43 0 515 241 18 60 chr4 23702948 23703114 -160585548 + MIR SINE MIR 2 160 -102 187 368 0 0 chr4 23703159 23703216 -160585446 - L2 LINE L2 -91 3181 3125 219 345 97 27 chr4 23703409 23703708 -160584954 + L2 LINE L2 2468 2787 -527 747 296 200 11 chr4 23703799 23704249 -160584413 - MLT1L LTR MaLR -80 535 1 224 326 55 108 chr4 23704260 23704714 -160583948 + L2 LINE L2 2809 3238 -34 211 330 34 0 chr4 23704744 23704832 -160583830 - L2 LINE L2 -238 3034 2944 613 325 71 50 chr4 23704956 23705350 -160583312 + L2 LINE L2 2348 2759 -555 2212 99 18 0 chr4 23705350 23705628 -160583034 + AluSg SINE Alu 1 284 -21 219 36 0 0 chr4 23705628 23705656 -160583006 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 613 325 71 50 chr4 23705661 23705860 -160582802 + L2 LINE L2 2759 2953 -361 272 336 69 0 chr4 23705898 23706014 -160582648 + MIR SINE MIR 5 128 -134 420 278 176 18 chr4 23706103 23706330 -160582332 + L2 LINE L2 3028 3290 -23 197 323 61 10 chr4 23706360 23706459 -160582203 + L2 LINE L2 2763 2866 -448 432 312 66 54 chr4 23709420 23709843 -160578819 + LTR67 LTR ERVL 103 530 -27 1100 202 112 83 chr4 23709948 23710502 -160578160 - L1MC4 LINE L1 0 8042 7473 197 132 26 26 chr4 23711761 23711799 -160576863 - L2 LINE L2 -18 3295 3258 832 174 96 158 chr4 23711907 23712281 -160576381 - MLT1B LTR MaLR -39 351 1 218 347 107 0 chr4 23712362 23712437 -160576225 + L2 LINE L2 3211 3293 -20 196 294 76 22 chr4 23712527 23712619 -160576043 - L2 LINE L2 -5 3308 3212 969 222 58 18 chr4 23712621 23712896 -160575766 - LTR16A1 LTR ERVL -4 453 168 2130 294 64 36 chr4 23713508 23714472 -160574190 - HERV16 LTR ERVL -2293 2703 1713 1279 173 5 5 chr4 23714475 23714689 -160573973 + AluJo SINE Alu 78 291 -21 1942 146 7 10 chr4 23714747 23715041 -160573621 - AluJb SINE Alu -19 293 1 607 347 29 26 chr4 23715089 23715432 -160573230 - HERV16 LTR ERVL -3425 1571 1228 36 62 0 0 chr4 23715861 23715925 -160572737 + AT_rich Low_complexity Low_complexity 1 64 0 1168 313 64 46 chr4 23718337 23718507 -160570155 - HERV16 LTR ERVL -4130 866 700 378 0 0 0 chr4 23718507 23718549 -160570113 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 1797 95 4 11 chr4 23718549 23718812 -160569850 - L1PA6 LINE L1 -16 6138 5878 1168 313 64 46 chr4 23718812 23719489 -160569173 - HERV16 LTR ERVL -4295 701 3 660 271 100 26 chr4 23719491 23719760 -160568902 - LTR16A1 LTR ERVL 0 457 169 330 221 118 110 chr4 23719766 23720038 -160568624 - L2 LINE L2 -1583 1731 1458 501 283 57 28 chr4 23721107 23721284 -160567378 + MIR SINE MIR 20 201 -61 432 224 10 0 chr4 23721774 23721872 -160566790 + MLT2B2 LTR ERVL 1 99 -416 2595 189 25 12 chr4 23721918 23722489 -160566173 - L1MC3 LINE L1 -8 7777 7200 237 266 64 32 chr4 23722489 23722583 -160566079 - MLT1F1 LTR MaLR -436 131 35 2625 106 9 19 chr4 23722608 23723041 -160565621 - L1PB1 LINE L1 0 6151 5723 2332 109 0 0 chr4 23723074 23723423 -160565239 - L1PB1 LINE L1 -400 5751 5403 189 0 0 0 chr4 23723435 23723456 -160565206 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 * 315 0 0 0 chr4 23723455 23723490 -160565172 + (TG)n Simple_repeat Simple_repeat 2 36 0 33017 73 10 7 chr4 23723490 23729030 -160559632 - L1PA6 LINE L1 -7 6147 595 382 260 35 81 chr4 23729358 23730091 -160558571 + L1ME3A LINE L1 3937 4637 -1509 563 292 26 26 chr4 23730123 23730349 -160558313 - LTR16B LTR ERVL -13 451 226 464 304 52 42 chr4 23730583 23731122 -160557540 + L1ME3A LINE L1 4670 5213 -933 22 70 0 0 chr4 23731135 23731178 -160557484 + AT_rich Low_complexity Low_complexity 1 43 0 1580 134 96 20 chr4 23731283 23731626 -160557036 + LTR24C LTR ERV1 242 610 -25 596 189 0 0 chr4 23731626 23731737 -160556925 + AluSg/x SINE Alu 197 307 -2 1249 236 33 64 chr4 23731782 23732298 -160556364 + Charlie2a DNA MER1_type 1586 2085 -777 4769 154 31 35 chr4 23732429 23733336 -160555326 - MER4D LTR ERV1 0 903 1 307 229 0 0 chr4 23733545 23733628 -160555034 + Charlie2 DNA MER1_type 2711 2793 -69 386 303 63 9 chr4 23733760 23733981 -160554681 + L1ME3A LINE L1 5730 5962 -208 24 32 0 0 chr4 23734164 23734195 -160554467 + AT_rich Low_complexity Low_complexity 1 31 0 391 113 70 0 chr4 23734208 23734279 -160554383 + MER50 LTR ERV1 1 76 -658 376 155 0 0 chr4 23734279 23734337 -160554325 - MER50-int LTR ERV1 -3808 3397 3340 582 219 0 9 chr4 23734337 23734451 -160554211 - MER50-int LTR ERV1 -4304 2901 2789 * 6159 134 46 21 chr4 23734448 23736168 -160552494 - MER50-int LTR ERV1 -5357 1848 7 867 149 39 0 chr4 23736168 23736322 -160552340 - MER50 LTR ERV1 -12 722 563 2189 149 31 0 chr4 23736327 23736717 -160551945 - MER50 LTR ERV1 -332 402 1 2290 191 21 12 chr4 23737252 23737733 -160550929 - MER31A LTR ERV1 0 485 1 2032 159 55 0 chr4 23738275 23738621 -160550041 + MLT1A1 LTR MaLR 1 365 0 239 242 55 22 chr4 23738796 23738887 -160549775 - MER103 DNA DNA -45 121 28 536 62 25 0 chr4 23738943 23739023 -160549639 + (TTCC)n Simple_repeat Simple_repeat 1 82 0 336 221 70 12 chr4 23739721 23739807 -160548855 - MIR SINE MIR -93 169 79 227 204 93 0 chr4 23741388 23741442 -160547220 - L2 LINE L2 -37 3276 3218 756 242 90 60 chr4 23742214 23742712 -160545950 + MLT1H LTR MaLR 73 590 -5 2644 146 12 32 chr4 23743728 23744222 -160544440 + MER31A LTR ERV1 1 484 -1 483 269 113 31 chr4 23745168 23745495 -160543167 + MLT1H LTR MaLR 183 536 -13 240 269 39 0 chr4 23745978 23746030 -160542632 + L2 LINE L2 3122 3175 -97 284 294 37 61 chr4 23746225 23746388 -160542274 - L3b LINE CR1 -134 1449 1291 628 274 60 75 chr4 23746600 23746852 -160541810 - MIR SINE MIR -12 250 3 221 294 228 11 chr4 23746964 23747056 -160541606 + MIR SINE MIR 38 149 -59 25 51 0 0 chr4 23747130 23747169 -160541493 + AT_rich Low_complexity Low_complexity 1 39 0 1594 214 28 21 chr4 23747325 23747712 -160540950 + MLT1B LTR MaLR 1 390 0 244 314 12 12 chr4 23748134 23748220 -160540442 + MIR3 SINE MIR 77 162 -46 496 250 70 17 chr4 23748259 23748431 -160540231 - Charlie8 DNA MER1_type -2155 262 82 6347 60 14 55 chr4 23748723 23750547 -160538115 - SVA Other Other -589 1382 1 678 282 38 41 chr4 23750929 23751220 -160537442 - L2 LINE L2 0 3313 3024 199 321 50 14 chr4 23751319 23751459 -160537203 + L2 LINE L2 2916 3060 -212 314 309 62 41 chr4 23751902 23752096 -160536566 - MLT1L LTR MaLR -415 200 3 467 298 53 8 chr4 23752097 23752228 -160536434 + L2 LINE L2 3136 3272 0 364 275 72 29 chr4 23753248 23753360 -160535302 + MIR SINE MIR 60 181 -81 471 78 0 0 chr4 23753360 23753424 -160535238 + (TA)n Simple_repeat Simple_repeat 1 64 0 364 275 72 29 chr4 23753424 23753449 -160535213 + MIR SINE MIR 181 203 -59 259 255 0 0 chr4 23753488 23753539 -160535123 + L2 LINE L2 3244 3294 -19 341 290 32 16 chr4 23754248 23754372 -160534290 + L2 LINE L2 2680 2805 -509 445 276 147 6 chr4 23754377 23754547 -160534115 - MER3 DNA MER1_type 0 209 16 488 271 178 32 chr4 23754616 23754897 -160533765 + L2 LINE L2 2992 3313 0 324 307 23 0 chr4 23755778 23755866 -160532796 + MIR SINE MIR 11 100 -162 2212 146 102 128 chr4 23755987 23756447 -160532215 + MER21B LTR ERV1 1 446 -417 1540 155 7 61 chr4 23756447 23756744 -160531918 - AluJo SINE Alu -30 282 2 2212 146 102 128 chr4 23756744 23756831 -160531831 + MER21B LTR ERV1 446 534 -329 1976 126 0 3 chr4 23756831 23757117 -160531545 - AluSx SINE Alu -27 285 1 1262 211 32 13 chr4 23757906 23758218 -160530444 + MER33 DNA MER1_type 3 320 -4 254 255 0 12 chr4 23758466 23758531 -160530131 - MIR SINE MIR -59 149 97 182 62 31 0 chr4 23758536 23758568 -160530094 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 45235 40 0 2 chr4 23758569 23764730 -160523932 - L1PA4 LINE L1 0 6155 4 320 188 0 12 chr4 23765085 23765165 -160523497 + (TA)n Simple_repeat Simple_repeat 2 80 0 204 225 0 0 chr4 23766060 23766100 -160522562 - L2 LINE L2 -20 3293 3254 340 103 109 0 chr4 23866844 23867000 -160421662 + (TA)n Simple_repeat Simple_repeat 2 174 0 21 0 0 0 chr4 23867005 23867026 -160421636 + AT_rich Low_complexity Low_complexity 1 21 0 453 96 84 6 chr4 23867042 23867208 -160421454 + (TA)n Simple_repeat Simple_repeat 2 180 0 266 138 62 15 chr4 23867208 23867273 -160421389 + MLT2B1 LTR ERVL 451 518 -2 571 271 80 73 chr4 23867756 23868058 -160420604 - MER102a DNA MER1_type 0 330 27 543 304 119 60 chr4 23868066 23868581 -160420081 + L2 LINE L2 2646 3273 -40 796 224 293 36 chr4 23868581 23869212 -160419450 + LTR50 LTR ERVL 3 795 0 543 304 119 60 chr4 23869212 23869256 -160419406 + L2 LINE L2 3273 3313 0 20601 112 19 14 chr4 23869443 23873073 -160415589 - L1P3 LINE L1 -551 5672 2058 1091 200 0 0 chr4 23873096 23873286 -160415376 - AluSg/x SINE Alu -18 294 105 2308 95 3 0 chr4 23873389 23873684 -160414978 + AluSp SINE Alu 12 307 -6 1301 193 80 80 chr4 23873986 23874061 -160414601 - MER31B LTR ERV1 -2 659 586 1811 165 131 11 chr4 23874061 23874443 -160414219 + MSTA LTR MaLR 1 428 0 1301 193 80 80 chr4 23874443 23874742 -160413920 - MER31B LTR ERV1 -75 586 87 2019 173 72 22 chr4 23874742 23875146 -160413516 - MSTB LTR MaLR -2 424 1 1301 193 80 80 chr4 23875146 23875234 -160413428 - MER31B LTR ERV1 -574 87 1 21 0 0 0 chr4 23875399 23875420 -160413242 + AT_rich Low_complexity Low_complexity 1 21 0 420 271 62 39 chr4 23875579 23875809 -160412853 + MLT1J LTR MaLR 5 322 -189 220 275 14 0 chr4 23875915 23875984 -160412678 + (ATG)n Simple_repeat Simple_repeat 3 72 0 2261 115 0 10 chr4 23876305 23876618 -160412044 + AluSx SINE Alu 1 310 -2 481 299 42 6 chr4 23877605 23877772 -160410890 - MIR SINE MIR -37 225 53 1103 97 58 11 chr4 23877892 23878070 -160410592 - THE1B LTR MaLR -2 362 183 420 164 0 0 chr4 23878188 23878255 -160410407 - AluJ/FLAM SINE Alu -244 68 2 400 345 57 57 chr4 23879598 23879844 -160408818 - MIR SINE MIR -6 256 11 2093 310 32 22 chr4 23880007 23881010 -160407652 + L2 LINE L2 2302 3313 0 23 68 0 0 chr4 23881010 23881054 -160407608 + AT_rich Low_complexity Low_complexity 1 44 0 376 298 73 49 chr4 23882143 23882348 -160406314 - MIR SINE MIR -21 241 32 250 191 105 182 chr4 23883624 23883833 -160404829 - L2 LINE L2 -5 3308 3116 900 296 79 50 chr4 23884195 23884275 -160404387 + HAL1 LINE L1 1 77 -2430 1850 106 102 7 chr4 23884275 23884559 -160404103 + AluSx SINE Alu 1 311 -1 900 296 79 50 chr4 23884559 23885060 -160403602 + HAL1 LINE L1 77 599 -1908 21 57 0 0 chr4 23885293 23885328 -160403334 + AT_rich Low_complexity Low_complexity 1 35 0 26 30 0 0 chr4 23885441 23885474 -160403188 + AT_rich Low_complexity Low_complexity 1 33 0 635 254 60 10 chr4 23885481 23885682 -160402980 + HAL1 LINE L1 1191 1401 -1106 1143 151 122 0 chr4 23885782 23885987 -160402675 - MSTA LTR MaLR -198 230 1 864 89 0 0 chr4 23886255 23886378 -160402284 + (TA)n Simple_repeat Simple_repeat 2 124 0 6489 65 5 5 chr4 23886462 23887968 -160400694 - L1PA7 LINE L1 -2 6152 4624 9510 89 15 1 chr4 23887968 23888282 -160400380 + L1P LINE L1 3195 3503 -2643 201 39 0 0 chr4 23888282 23888308 -160400354 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 9510 89 15 1 chr4 23888308 23889359 -160399303 + L1P LINE L1 3503 4578 -1568 254 336 55 45 chr4 23889416 23889526 -160399136 - L2 LINE L2 -6 3266 3156 1752 134 106 3 chr4 23890068 23890352 -160398310 - AluSp SINE Alu 0 313 1 260 304 36 18 chr4 23890633 23890745 -160397917 - MIR SINE MIR -11 251 138 621 274 132 5 chr4 23890810 23891007 -160397655 - MIR SINE MIR -9 253 32 324 311 97 60 chr4 23891438 23891737 -160396925 + L2 LINE L2 2949 3258 -55 359 234 65 28 chr4 23891870 23891977 -160396685 - MIR SINE MIR 0 262 152 181 359 136 0 chr4 23893326 23893510 -160395152 - L2 LINE L2 -126 3187 2979 447 164 18 18 chr4 23894100 23894210 -160394452 + GA-rich Low_complexity Low_complexity 2 111 0 201 178 0 0 chr4 23895037 23895082 -160393580 + (TG)n Simple_repeat Simple_repeat 2 46 0 1977 180 11 6 chr4 23895238 23895599 -160393063 + MLT1A1 LTR MaLR 3 365 0 2188 86 0 43 chr4 23895807 23896111 -160392551 - AluY SINE Alu -20 291 1 317 316 11 0 chr4 23896620 23896715 -160391947 - MIR SINE MIR -17 245 150 2630 81 2 81 chr4 23896716 23897125 -160391537 + MER51B LTR ERV1 1 377 0 361 289 0 0 chr4 23897874 23897964 -160390698 - L2 LINE L2 -3 3310 3221 421 246 8 63 chr4 23897983 23898109 -160390553 + L2 LINE L2 3194 3312 -1 * 664 290 112 74 chr4 23898099 23898725 -160389937 - L2 LINE L2 -74 3239 2594 294 103 0 0 chr4 23899397 23899436 -160389226 - THE1B LTR MaLR -325 39 1 262 235 153 41 chr4 23899508 23899678 -160388984 - Charlie8 DNA MER1_type -2153 264 76 277 308 83 0 chr4 23899823 23899943 -160388719 + MIR SINE MIR 100 229 -33 673 284 124 20 chr4 23900458 23900901 -160387761 - LTR33A LTR ERVL 0 523 35 344 343 47 24 chr4 23901183 23901352 -160387310 + MIR SINE MIR 65 237 -25 2759 61 56 5 chr4 23902121 23902542 -160386120 - L1PA8 LINE L1 0 6172 5767 552 299 87 80 chr4 23902661 23903247 -160385415 + L2 LINE L2 2730 3313 0 1977 55 63 0 chr4 23903312 23903567 -160385095 + L1P3 LINE L1 5441 5711 -443 297 363 27 0 chr4 23903653 23903799 -160384863 - L2 LINE L2 -12 3301 3152 191 261 87 0 chr4 23904200 23904269 -160384393 - MIR SINE MIR -71 191 117 409 348 53 18 chr4 23904748 23904975 -160383687 - MIR SINE MIR 0 262 28 271 317 132 39 chr4 23905439 23905602 -160383060 + MIR SINE MIR 6 189 -73 219 69 0 0 chr4 23905641 23905670 -160382992 + (TC)n Simple_repeat Simple_repeat 2 30 0 293 327 69 0 chr4 23905947 23906048 -160382614 - MIR3 SINE MIR -16 192 85 197 264 191 18 chr4 23907065 23907175 -160381487 - MIR SINE MIR -37 225 97 610 205 25 0 chr4 23910158 23910280 -160378382 + MLT1B LTR MaLR 1 125 -265 1144 29 0 7 chr4 23910280 23910419 -160378243 - L1PA5 LINE L1 -245 5910 5773 1774 48 0 4 chr4 23910419 23910635 -160378027 + L1PA5 LINE L1 5928 6145 -9 189 0 0 0 chr4 23910635 23910656 -160378006 + (TA)n Simple_repeat Simple_repeat 1 21 0 1275 220 7 22 chr4 23910666 23910943 -160377719 + MLT1B LTR MaLR 117 389 -1 2471 133 48 7 chr4 23911393 23911808 -160376854 - MSTB1 LTR MaLR 0 432 1 262 284 0 37 chr4 23912295 23912376 -160376286 - MER2 DNA MER2_type -1 344 267 722 148 16 0 chr4 23912521 23912649 -160376013 - MER2 DNA MER2_type -162 183 54 419 248 37 0 chr4 23912699 23912808 -160375854 - MER81 DNA DNA -1 113 1 796 189 54 49 chr4 23913143 23913328 -160375334 + MER5A DNA MER1_type 4 189 0 337 313 60 12 chr4 23913348 23913514 -160375148 - MER5B DNA MER1_type -3 175 2 22 0 0 0 chr4 23917224 23917246 -160371416 + AT_rich Low_complexity Low_complexity 1 22 0 230 241 80 0 chr4 23917311 23917380 -160371282 - MIR SINE MIR -63 145 69 1123 197 62 55 chr4 23917894 23918219 -160370443 + L1MA10 LINE L1 6005 6331 -3 1824 141 32 60 chr4 23918633 23918980 -160369682 - MER1B DNA MER1_type 0 337 1 671 141 156 8 chr4 23919252 23919380 -160369282 - MSTA LTR MaLR 0 428 282 300 175 18 0 chr4 23919508 23919565 -160369097 + HAL1 LINE L1 1533 1590 -917 983 228 46 3 chr4 23919614 23919899 -160368763 + MER33 DNA MER1_type 22 318 -6 1145 266 75 44 chr4 23919911 23920591 -160368071 + HAL1 LINE L1 1803 2503 -4 264 197 26 26 chr4 23921385 23921461 -160367201 + MER116 DNA Mariner 4 79 -1 421 216 31 74 chr4 23921476 23921638 -160367024 + L2 LINE L2 3159 3313 0 23 86 0 0 chr4 23921668 23921726 -160366936 + AT_rich Low_complexity Low_complexity 1 58 0 448 210 31 0 chr4 23922646 23922808 -160365854 + (TA)n Simple_repeat Simple_repeat 2 168 0 216 122 0 0 chr4 23922839 23922880 -160365782 + (GA)n Simple_repeat Simple_repeat 1 41 0 844 300 81 3 chr4 23923588 23923921 -160364741 - L2 LINE L2 -1 3312 2954 2104 138 48 20 chr4 23924599 23924953 -160363709 + THE1B LTR MaLR 1 364 0 263 329 129 50 chr4 23925733 23926013 -160362649 + L2 LINE L2 2553 2854 -460 382 390 70 18 chr4 23926144 23926475 -160362187 + L2 LINE L2 2925 3272 0 24 0 0 0 chr4 23926539 23926563 -160362099 + AT_rich Low_complexity Low_complexity 1 24 0 3160 143 47 33 chr4 23926841 23927634 -160361028 + pTR5 LTR ERV1 743 2021 -417 313 242 33 0 chr4 23927638 23927729 -160360933 + LTR30 LTR ERV1 544 637 -85 2367 96 3 0 chr4 23927729 23928062 -160360600 + pTR5 LTR ERV1 59 392 -2046 475 223 0 0 chr4 23928249 23928352 -160360310 + MER58 DNA MER1_type 2318 2420 0 235 200 170 16 chr4 23929502 23929555 -160359107 - MIR SINE MIR -54 154 111 1604 279 56 28 chr4 23929555 23930164 -160358498 + MLT2E LTR ERVL 3 628 0 235 200 170 16 chr4 23930164 23930221 -160358441 - MIR SINE MIR -97 111 20 213 121 0 0 chr4 23930779 23930812 -160357850 + (GGA)n Simple_repeat Simple_repeat 3 35 0 226 306 0 31 chr4 23930816 23930914 -160357748 + A-rich Low_complexity Low_complexity 3 97 0 486 272 114 27 chr4 23931260 23931444 -160357218 - MIR SINE MIR -34 228 29 834 226 95 50 chr4 23932632 23932676 -160355986 - MER58B DNA MER1_type -2088 332 291 629 305 9 27 chr4 23932676 23932899 -160355763 - MER20 DNA MER1_type 0 219 1 834 226 95 50 chr4 23932899 23933137 -160355525 - MER58B DNA MER1_type -2129 291 37 183 42 0 0 chr4 23933611 23933635 -160355027 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1977 131 0 0 chr4 23933642 23933909 -160354753 - AluSc SINE Alu -36 273 7 207 281 0 0 chr4 23934650 23934732 -160353930 + (TA)n Simple_repeat Simple_repeat 2 83 0 873 232 6 6 chr4 23935346 23935523 -160353139 - MER5A DNA MER1_type -9 180 4 2373 232 63 3 chr4 23935654 23936254 -160352408 - MER99 DNA DNA -1 827 192 251 191 0 0 chr4 23936961 23937003 -160351659 - MER99 DNA DNA -736 92 51 1432 175 79 10 chr4 23937003 23937045 -160351617 - AluSx SINE Alu -1 311 273 1645 169 83 17 chr4 23937045 23937395 -160351267 + THE1C LTR MaLR 1 373 -2 1432 175 79 10 chr4 23937395 23937523 -160351139 - AluSx SINE Alu -39 273 155 234 62 0 0 chr4 23937523 23937555 -160351107 + (TTA)n Simple_repeat Simple_repeat 1 32 0 1432 175 79 10 chr4 23937555 23937674 -160350988 - AluSx SINE Alu -157 155 1 281 217 17 0 chr4 23937674 23937734 -160350928 - MER99 DNA DNA -766 62 2 948 127 27 7 chr4 23937813 23937963 -160350699 - L1PA15 LINE L1 -6 6159 6007 1065 287 226 6 chr4 23938025 23938548 -160350114 + L2 LINE L2 2365 2997 -316 1618 166 3 11 chr4 23938840 23939124 -160349538 + Tigger3(Golem) DNA MER2_type 2747 3028 -1 801 272 28 101 chr4 23939246 23939390 -160349272 + MLT1I LTR MaLR 5 158 -251 2453 68 0 10 chr4 23939390 23939699 -160348963 - AluY SINE Alu -5 306 1 801 272 28 101 chr4 23939699 23939991 -160348671 + MLT1I LTR MaLR 158 409 0 239 83 28 0 chr4 23941929 23941965 -160346697 - L1PA7 LINE L1 -458 5714 5678 3418 64 11 2 chr4 23941965 23942417 -160346245 + L1PA7 LINE L1 5694 6149 -5 3498 142 32 14 chr4 23942484 23943148 -160345514 - Tigger3(Golem) DNA MER2_type -1 3028 2353 1108 212 0 0 chr4 23943141 23943339 -160345323 - Tigger3(Golem) DNA MER2_type -2828 201 4 * 1540 201 7 3 chr4 23943403 23943687 -160344975 + AluJb SINE Alu 1 285 -27 330 45 0 0 chr4 23943687 23943731 -160344931 + (CA)n Simple_repeat Simple_repeat 2 45 0 2941 37 0 0 chr4 23944256 23944606 -160344056 - L1PA5 LINE L1 -2 6152 5803 1642 43 0 0 chr4 23944606 23944814 -160343848 + L1P LINE L1 5030 5237 -909 315 207 12 61 chr4 23944887 23944969 -160343693 + MIR SINE MIR 166 243 -19 2021 130 3 15 chr4 23945690 23946014 -160342648 + MER44D DNA MER2_type 11 600 -9 2258 110 51 25 chr4 23946014 23946369 -160342293 + THE1B LTR MaLR 1 364 0 766 159 53 36 chr4 23946486 23946659 -160342003 - MLT1A1 LTR MaLR 0 365 226 606 154 138 15 chr4 23946668 23946798 -160341864 + MLT1A1 LTR MaLR 2 147 -218 396 217 60 0 chr4 23946908 23946991 -160341671 - MLT1A1 LTR MaLR -276 89 2 2392 236 102 0 chr4 23946992 23947521 -160341141 - MLT1A1-int LTR MaLR 0 1735 1153 618 267 14 74 chr4 23947536 23947753 -160340909 - MLT1A1-int LTR MaLR -721 1014 811 1361 86 111 82 chr4 23947784 23948079 -160340583 - AluSg SINE Alu 0 330 29 1141 222 65 37 chr4 23948079 23948430 -160340232 - MLT1A1 LTR MaLR -4 361 1 414 211 256 0 chr4 23948742 23948875 -160339787 - MER33 DNA MER1_type -152 172 6 709 236 162 82 chr4 23949003 23949405 -160339257 + MLT2B1 LTR ERVL 87 520 0 238 183 0 50 chr4 23949804 23949864 -160338798 + LTR33A LTR ERVL 445 501 -22 371 287 64 19 chr4 23950366 23950523 -160338139 - MLT1K LTR MaLR -2 586 423 343 362 71 21 chr4 23950580 23950862 -160337800 - MLT1K LTR MaLR -275 313 18 437 227 49 47 chr4 23951095 23951254 -160337408 - MLT1H LTR MaLR -8 547 386 338 282 0 13 chr4 23952147 23952225 -160336437 - MLT1H LTR MaLR -398 151 75 185 254 16 79 chr4 23953290 23953353 -160335309 - L2 LINE L2 -15 3257 3199 638 316 26 7 chr4 23954047 23954319 -160334343 + MER110 LTR ERV1 215 491 0 311 164 100 64 chr4 23954419 23954529 -160334133 + MER110 LTR ERV1 378 491 0 7107 258 63 32 chr4 23954765 23955483 -160333179 + L1MDa LINE L1 16 710 -5830 2019 157 40 0 chr4 23955483 23955833 -160332829 + THE1B LTR MaLR 1 364 0 7107 258 63 32 chr4 23955833 23958491 -160330171 + L1MDa LINE L1 710 3499 -3041 1036 167 0 0 chr4 23958586 23958748 -160329914 + AluJb SINE Alu 142 303 -9 2191 276 73 41 chr4 23958750 23959926 -160328736 + L1MDa LINE L1 3554 4767 -1773 476 236 71 0 chr4 23959930 23960057 -160328605 - L1MA5 LINE L1 -212 6088 5953 23 0 0 0 chr4 23960701 23960724 -160327938 + AT_rich Low_complexity Low_complexity 1 23 0 528 155 17 43 chr4 23961069 23961185 -160327477 - L1MA4 LINE L1 -298 6002 5890 258 156 0 0 chr4 23961304 23961349 -160327313 + (TA)n Simple_repeat Simple_repeat 1 45 0 336 231 35 8 chr4 23961349 23961473 -160327189 + L1MC4 LINE L1 1995 6983 -1339 307 214 0 14 chr4 23961445 23961515 -160327147 + L1MC/D LINE L1 1995 2063 -4363 * 3102 173 29 24 chr4 23961516 23962665 -160325997 - L1MA4 LINE L1 -507 5793 4653 936 168 10 0 chr4 23962665 23962862 -160325800 + L1MA4 LINE L1 6091 6289 -11 428 175 21 0 chr4 23962886 23962983 -160325679 + L1M4 LINE L1 4980 5078 -1068 2633 252 42 17 chr4 23963038 23964071 -160324591 + L1MC/D LINE L1 4657 5718 -743 235 286 133 19 chr4 23965791 23965896 -160322766 + MIR SINE MIR 36 152 -110 934 247 59 52 chr4 23966200 23966625 -160322037 + MER69B DNA AcHobo 710 1137 -89 21 36 0 0 chr4 23969869 23969897 -160318765 + AT_rich Low_complexity Low_complexity 1 28 0 309 347 47 24 chr4 23969929 23970226 -160318436 + HAL1b LINE L1 372 675 -673 384 59 0 0 chr4 23970473 23970524 -160318138 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 1882 172 3 0 chr4 23970563 23970866 -160317796 + AluSx SINE Alu 1 304 -8 25 31 0 0 chr4 23970942 23970974 -160317688 + AT_rich Low_complexity Low_complexity 1 32 0 432 292 23 8 chr4 23971093 23971223 -160317439 - MIR SINE MIR -21 241 110 21 36 0 0 chr4 23971258 23971286 -160317376 + AT_rich Low_complexity Low_complexity 1 28 0 239 329 26 0 chr4 23972390 23972466 -160316196 - L2 LINE L2 -54 3259 3182 268 196 0 0 chr4 23973103 23973149 -160315513 + Tigger2 DNA MER2_type 1 46 -2672 706 130 109 7 chr4 23973175 23973313 -160315349 + Tigger2 DNA MER2_type 2292 2443 -275 1016 178 24 28 chr4 23973313 23973560 -160315102 + THE1C LTR MaLR 1 246 -129 531 103 121 52 chr4 23973662 23973722 -160314940 + Tigger2 DNA MER2_type 2370 2424 -294 2037 142 19 16 chr4 23973722 23974096 -160314566 + THE1C LTR MaLR 1 375 0 531 103 121 52 chr4 23974096 23974151 -160314511 + Tigger2 DNA MER2_type 2424 2493 -225 1600 190 6 19 chr4 23974155 23974193 -160314469 - AluJo SINE Alu -5 307 270 2183 126 36 14 chr4 23974193 23974549 -160314113 + THE1B LTR MaLR 1 364 0 1600 190 6 19 chr4 23974549 23974821 -160313841 - AluJo SINE Alu -42 270 1 1225 166 38 8 chr4 23974821 23975056 -160313606 + Tigger2 DNA MER2_type 2477 2718 0 310 282 109 23 chr4 23976126 23976300 -160312362 - MIR SINE MIR -2 260 72 650 323 83 15 chr4 23976496 23977015 -160311647 - L2 LINE L2 0 3313 2682 2050 113 7 7 chr4 23977018 23977319 -160311343 - AluSq SINE Alu -12 301 1 2037 144 0 6 chr4 23977388 23977701 -160310961 + AluSx SINE Alu 1 311 -1 425 182 68 0 chr4 23977862 23977950 -160310712 + FLAM_A SINE Alu 2 95 -47 25 0 0 0 chr4 23977950 23977975 -160310687 + AT_rich Low_complexity Low_complexity 1 25 0 1559 163 31 0 chr4 23978644 23978901 -160309761 + AluSx SINE Alu 12 276 -36 873 322 86 47 chr4 23978927 23979583 -160309079 - L2 LINE L2 -252 3061 2370 2056 133 7 0 chr4 23979696 23979997 -160308665 + AluSx SINE Alu 1 303 -9 1589 216 28 37 chr4 23980088 23980519 -160308143 + MSTC LTR MaLR 2 428 0 1770 144 33 0 chr4 23981968 23982273 -160306389 - AluSg SINE Alu 0 314 1 188 288 61 0 chr4 23983318 23983384 -160305278 - L2 LINE L2 -15 3298 3229 22 0 0 0 chr4 23983765 23983787 -160304875 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr4 23984045 23984065 -160304597 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 7730 26 5 0 chr4 23984266 23985950 -160302712 - L1PA4 LINE L1 -3 6152 4464 4515 35 4 0 chr4 23985950 23986496 -160302166 + L1PA4 LINE L1 3908 4455 -1691 2023 143 40 27 chr4 23987325 23987695 -160300967 + THE1C LTR MaLR 1 375 0 23 0 0 0 chr4 23988209 23988232 -160300430 + AT_rich Low_complexity Low_complexity 1 23 0 393 280 19 85 chr4 23988382 23988700 -160299962 - HAL1 LINE L1 -162 2345 2049 3070 68 5 2 chr4 23988702 23989100 -160299562 + MLT2A1 LTR ERVL 1 399 -45 23 33 0 0 chr4 23989121 23989151 -160299511 + AT_rich Low_complexity Low_complexity 1 30 0 319 106 0 0 chr4 23989151 23989198 -160299464 + MLT2A1 LTR ERVL 390 436 -8 25 31 0 0 chr4 23989213 23989245 -160299417 + AT_rich Low_complexity Low_complexity 1 32 0 401 321 108 47 chr4 23989383 23989595 -160299067 - HAL1 LINE L1 -607 1900 1676 330 304 28 56 chr4 23989871 23990085 -160298577 + L1MEd LINE L1 529 736 -5636 267 303 81 70 chr4 23990193 23990724 -160297938 + L1MEd LINE L1 967 1503 -4869 * 378 300 144 15 chr4 23990701 23990971 -160297691 + L1MEd LINE L1 1370 1674 -4710 452 237 144 66 chr4 23991053 23991310 -160297352 + LTR37B LTR ERV1 11 287 -181 360 263 71 86 chr4 23992082 23992267 -160296395 + L1MEd LINE L1 2490 2676 -3706 1604 152 70 7 chr4 23992267 23992537 -160296125 + AluSx SINE Alu 1 287 -25 215 30 0 30 chr4 23992544 23992577 -160296085 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 1931 134 0 3 chr4 23992578 23992862 -160295800 + AluSx SINE Alu 10 292 -20 360 263 71 86 chr4 23992862 23992921 -160295741 + L1MEd LINE L1 2681 2740 -3642 7527 31 0 4 chr4 23993056 23994056 -160294606 - L1PA3 LINE L1 0 6155 5157 333 248 9 44 chr4 23994056 23994169 -160294493 + CT-rich Low_complexity Low_complexity 2 110 0 231 277 97 53 chr4 23994558 23994858 -160293804 - L1ME LINE L1 -593 5569 5257 24 32 0 0 chr4 23994986 23995017 -160293645 + AT_rich Low_complexity Low_complexity 1 31 0 548 299 53 13 chr4 23995274 23995592 -160293070 - L1ME LINE L1 -1328 4818 4488 251 266 137 16 chr4 23995596 23995720 -160292942 - L1ME LINE L1 -1736 4410 4272 937 247 60 7 chr4 23995720 23996261 -160292401 - MLT1E1 LTR MaLR -22 631 1 210 71 0 0 chr4 23997635 23997663 -160290999 + (CAA)n Simple_repeat Simple_repeat 2 29 0 230 389 159 0 chr4 23997742 23997899 -160290763 + L2 LINE L2 3016 3197 -75 2377 156 18 10 chr4 23998086 23998483 -160290179 - MSTA LTR MaLR -2 426 27 22 35 0 0 chr4 23999797 23999826 -160288836 + AT_rich Low_complexity Low_complexity 1 29 0 202 331 93 26 chr4 24000131 24000282 -160288380 - MIR SINE MIR -29 233 73 25 31 0 0 chr4 24000627 24000659 -160288003 + AT_rich Low_complexity Low_complexity 1 32 0 386 324 41 29 chr4 24000881 24001051 -160287611 + MIR SINE MIR 90 261 -1 21 36 0 0 chr4 24001217 24001245 -160287417 + AT_rich Low_complexity Low_complexity 1 28 0 3667 301 92 20 chr4 24003142 24004810 -160283852 + L2 LINE L2 996 2782 -532 281 355 30 105 chr4 24004935 24005267 -160283395 - L2 LINE L2 0 3272 2966 2041 131 0 13 chr4 24005396 24005709 -160282953 + AluSg SINE Alu 1 309 -1 1730 180 44 0 chr4 24005752 24006069 -160282593 + MER44D DNA MER2_type 9 609 0 351 289 50 8 chr4 24006450 24006571 -160282091 - MLT1L LTR MaLR -349 266 141 1275 229 83 47 chr4 24007077 24007439 -160281223 + MLT1B LTR MaLR 1 375 -15 1676 135 0 4 chr4 24007967 24008204 -160280458 + AluSq SINE Alu 1 236 -77 1049 314 90 24 chr4 24008932 24010093 -160278569 + L1MEc LINE L1 829 2065 -4331 202 182 36 0 chr4 24010111 24010166 -160278496 + (TA)n Simple_repeat Simple_repeat 2 58 0 765 231 117 36 chr4 24010225 24010506 -160278156 + L1MC3 LINE L1 6063 6366 -1419 388 260 27 81 chr4 24010508 24010731 -160277931 + L1MEc LINE L1 2201 2411 -3985 2652 167 82 34 chr4 24010747 24011490 -160277172 - LTR1B LTR ERV1 0 826 1 861 242 56 78 chr4 24011505 24011951 -160276711 + L1MEc LINE L1 2399 2834 -3381 576 277 104 17 chr4 24011947 24012427 -160276235 + L1MEc LINE L1 3953 4474 -1741 * 1270 242 47 85 chr4 24012500 24013244 -160275418 + L1MEc LINE L1 1679 2394 -4002 3659 287 61 46 chr4 24013247 24014776 -160273886 + L1MEc LINE L1 3440 4990 -1225 397 332 65 35 chr4 24014785 24015017 -160273645 - LTR33 LTR ERVL -272 249 11 679 147 0 9 chr4 24015032 24015141 -160273521 - MLT1D LTR MaLR -340 165 58 189 0 0 0 chr4 24015294 24015315 -160273347 + (CA)n Simple_repeat Simple_repeat 2 22 0 1452 219 42 26 chr4 24015315 24015698 -160272964 + L1MB8 LINE L1 5680 6068 -110 461 270 57 52 chr4 24015747 24015958 -160272704 + L1ME3A LINE L1 5945 6156 -14 225 363 39 0 chr4 24016209 24016311 -160272351 - L2 LINE L2 -962 2352 2247 825 237 6 0 chr4 24016474 24016647 -160272015 + LTR33 LTR ERVL 344 517 -4 358 291 0 0 chr4 24017341 24017420 -160271242 - MER5B DNA MER1_type 0 178 100 1052 345 42 24 chr4 24017584 24018210 -160270452 + ERVL LTR ERVL 1492 2128 -3636 370 306 48 27 chr4 24018238 24018471 -160270191 + ERVL LTR ERVL 2203 2430 -3224 665 220 8 8 chr4 24018560 24018692 -160269970 + MER5A DNA MER1_type 26 157 -32 1082 332 32 16 chr4 24018803 24019306 -160269356 + ERVL LTR ERVL 2680 3190 -2574 4217 236 61 40 chr4 24019562 24021483 -160267179 + L1MEc LINE L1 59 2030 -4185 2199 135 0 0 chr4 24021483 24021795 -160266867 + AluSx SINE Alu 1 312 0 4217 236 61 40 chr4 24021795 24022760 -160265902 + L1MEc LINE L1 2030 2973 -3242 968 146 0 13 chr4 24022871 24023029 -160265633 + L1PA7 LINE L1 5986 6141 -13 3572 264 60 45 chr4 24023117 24024937 -160263725 + L1ME LINE L1 2274 4120 -2095 1473 226 41 62 chr4 24024949 24025279 -160263383 + L1ME LINE L1 4795 5131 -1035 4664 26 0 2 chr4 24025279 24025826 -160262836 + L1PA4 LINE L1 5610 6155 0 1473 226 41 62 chr4 24025826 24026394 -160262268 + L1ME LINE L1 5131 5673 -493 1926 214 33 70 chr4 24026401 24026919 -160261743 - MLT1D LTR MaLR -6 499 1 271 281 11 0 chr4 24026919 24027008 -160261654 + L1ME LINE L1 5670 5759 -407 1177 89 24 18 chr4 24027008 24027177 -160261485 - THE1C LTR MaLR -205 170 1 389 282 24 59 chr4 24027259 24027429 -160261233 + ERVL LTR ERVL 3468 3631 -2023 588 313 46 11 chr4 24027877 24028139 -160260523 + ERVL LTR ERVL 4323 4593 -1061 330 403 22 0 chr4 24028725 24028864 -160259798 + LTR33 LTR ERVL 86 227 -294 551 317 165 17 chr4 24028990 24029403 -160259259 - LTR33 LTR ERVL 0 521 48 265 268 163 66 chr4 24030642 24030843 -160257819 + MIR SINE MIR 36 252 -10 240 269 39 87 chr4 24031554 24031658 -160257004 + MLT1H1 LTR MaLR 140 238 -292 261 270 145 50 chr4 24031685 24031844 -160256818 + MLT1H1 LTR MaLR 382 555 0 3638 161 70 57 chr4 24031894 24032671 -160255991 - MER54B LTR ERVL 0 793 7 2133 134 111 28 chr4 24032917 24033312 -160255350 + MSTA LTR MaLR 1 428 0 1964 134 113 3 chr4 24033384 24033712 -160254950 - THE1B LTR MaLR 0 364 1 1827 128 136 60 chr4 24035122 24035519 -160253143 + MSTA LTR MaLR 2 428 0 1459 34 0 6 chr4 24035608 24035783 -160252879 - AluY SINE Alu -9 302 129 183 80 0 0 chr4 24036080 24036105 -160252557 + (TG)n Simple_repeat Simple_repeat 1 25 0 1604 239 92 10 chr4 24036111 24036512 -160252150 + MLT2B1 LTR ERVL 83 516 -4 856 256 59 10 chr4 24036517 24036822 -160251840 + HERVL-B1 LTR ERVL 2 321 -5333 * 3277 184 20 17 chr4 24036820 24037407 -160251255 + HERVL-B1 LTR ERVL 1151 1739 -4025 7328 183 23 18 chr4 24037411 24040130 -160248532 + HERVL-B1 LTR ERVL 2921 5757 -7 1204 251 27 13 chr4 24040130 24040429 -160248233 + MLT2B1 LTR ERVL 1 303 -217 21 0 0 0 chr4 24040486 24040507 -160248155 + AT_rich Low_complexity Low_complexity 1 21 0 274 119 24 0 chr4 24040633 24040675 -160247987 + MER4E LTR ERV1 654 696 -70 442 316 109 57 chr4 24040793 24041373 -160247289 + L1M4 LINE L1 3047 3656 -2490 21 36 0 0 chr4 24041854 24041882 -160246780 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr4 24042030 24042060 -160246602 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr4 24042128 24042157 -160246505 + AT_rich Low_complexity Low_complexity 1 29 0 246 304 173 24 chr4 24042197 24042365 -160246297 - MIR SINE MIR -48 214 22 1002 293 163 27 chr4 24043190 24043774 -160244888 - MLT2F LTR ERVL 0 663 1 262 294 29 39 chr4 24043973 24044075 -160244587 + L3 LINE CR1 1471 1571 -6 2280 68 0 39 chr4 24044574 24044882 -160243780 + AluY SINE Alu 5 300 -11 403 304 141 48 chr4 24045648 24046003 -160242659 - L2 LINE L2 -5 3308 2921 437 295 0 22 chr4 24046129 24046268 -160242394 - MER45 DNA AcHobo -2 1579 1444 754 242 28 6 chr4 24046656 24046838 -160241824 - MER20 DNA MER1_type 0 219 34 258 274 226 0 chr4 24047340 24047446 -160241216 + L2 LINE L2 3184 3313 0 1605 186 94 3 chr4 24047455 24047762 -160240900 - MLT1A1 LTR MaLR 0 365 31 638 159 0 0 chr4 24049142 24049255 -160239407 + L1M4 LINE L1 4705 4817 -1329 2354 279 52 16 chr4 24049356 24050466 -160238196 - L1M3c LINE L1 -4644 1497 428 2143 123 53 17 chr4 24050466 24050825 -160237837 + THE1C LTR MaLR 1 372 -3 1111 144 82 16 chr4 24050635 24050829 -160237833 + THE1C LTR MaLR 169 375 0 * 2354 279 52 16 chr4 24050829 24050978 -160237684 - L1M3c LINE L1 -5717 424 142 2451 72 0 0 chr4 24051171 24051464 -160237198 - AluSp SINE Alu -20 293 1 1141 229 100 116 chr4 24051465 24052010 -160236652 - Zaphod DNA AcHobo -1552 2479 1954 2296 113 0 3 chr4 24052010 24052321 -160236341 - AluY SINE Alu -1 310 1 1141 229 100 116 chr4 24052321 24052725 -160235937 - Zaphod DNA AcHobo -2077 1954 1545 2379 81 0 25 chr4 24052728 24053048 -160235614 + AluSx SINE Alu 1 312 0 183 380 14 0 chr4 24053165 24053236 -160235426 + L2 LINE L2 3198 3269 -44 2382 90 0 0 chr4 24053512 24053811 -160234851 - AluSp SINE Alu -14 299 1 260 363 59 15 chr4 24055654 24055789 -160232873 - MIR SINE MIR -98 164 24 23 33 0 0 chr4 24056129 24056159 -160232503 + AT_rich Low_complexity Low_complexity 1 30 0 261 202 0 135 chr4 24056639 24056743 -160231919 - L1MC4 LINE L1 -1339 6703 6614 225 178 0 0 chr4 24056762 24056807 -160231855 + (TA)n Simple_repeat Simple_repeat 2 46 0 193 327 0 0 chr4 24058602 24058657 -160230005 + L2 LINE L2 2589 2643 -671 240 279 15 0 chr4 24059444 24059512 -160229150 + GA-rich Low_complexity Low_complexity 3 71 0 21 0 0 0 chr4 24060841 24060862 -160227800 + AT_rich Low_complexity Low_complexity 1 21 0 525 280 133 32 chr4 24061163 24061502 -160227160 - MLT1I LTR MaLR -7 402 30 992 234 60 37 chr4 24061599 24061868 -160226794 - MLT2B1 LTR ERVL -244 276 2 1754 119 66 54 chr4 24061899 24062234 -160226428 - Tigger7 DNA MER2_type -1 2586 2248 645 192 299 0 chr4 24062236 24062413 -160226249 + Tigger7 DNA MER2_type 75 304 -2183 429 216 0 0 chr4 24062436 24062510 -160226152 - Tigger7 DNA MER2_type -265 74 1 212 194 0 0 chr4 24063213 24063249 -160225413 + (TA)n Simple_repeat Simple_repeat 2 37 0 503 184 0 0 chr4 24063267 24063343 -160225319 + AluSx SINE Alu 1 76 -237 5264 128 101 85 chr4 24063347 24064899 -160223763 - pTR5 LTR ERV1 -1 2437 743 1430 126 51 9 chr4 24064899 24065113 -160223549 + AluSx SINE Alu 71 293 -17 22 0 0 0 chr4 24065116 24065138 -160223524 + AT_rich Low_complexity Low_complexity 1 22 0 396 313 84 84 chr4 24065138 24065889 -160222773 - L1M4 LINE L1 -3240 2906 2156 266 241 0 0 chr4 24065919 24065973 -160222689 - Tigger5 DNA MER2_type -2269 54 1 399 292 7 45 chr4 24065991 24066145 -160222517 - HAL1 LINE L1 -1196 1311 1164 969 307 69 20 chr4 24067836 24068285 -160220377 + L2 LINE L2 2843 3313 0 321 172 0 0 chr4 24068368 24068426 -160220236 + Tigger4(Zombi) DNA MER2_type 1 58 -2673 237 33 0 0 chr4 24068426 24068456 -160220206 + (ATTG)n Simple_repeat Simple_repeat 2 31 0 2611 110 14 0 chr4 24068456 24068812 -160219850 - L1PB1 LINE L1 -10 6141 5781 212 100 25 0 chr4 24068812 24068852 -160219810 + (TA)n Simple_repeat Simple_repeat 2 42 0 198 103 0 0 chr4 24068851 24068880 -160219782 + (CA)n Simple_repeat Simple_repeat 2 30 0 * 2398 110 9 3 chr4 24068880 24069225 -160219437 - L1PB1 LINE L1 -360 5791 5445 4152 203 17 10 chr4 24069225 24070164 -160218498 + L1 LINE L1 3891 4836 -1310 771 145 61 0 chr4 24070277 24070408 -160218254 + Tigger4(Zombi) DNA MER2_type 2593 2731 0 1830 199 152 39 chr4 24070678 24071145 -160217517 + MLT2B1 LTR ERVL 1 520 0 461 194 0 31 chr4 24071263 24071361 -160217301 - MER94 DNA DNA -1 133 39 208 372 11 0 chr4 24071602 24071696 -160216966 + L2 LINE L2 2537 2631 -683 2924 110 30 0 chr4 24071699 24072099 -160216563 + MLT2A2 LTR ERVL 42 453 0 189 224 53 53 chr4 24072837 24072913 -160215749 + MIR SINE MIR 187 262 0 710 174 7 21 chr4 24073371 24073515 -160215147 - MSTA LTR MaLR -270 158 17 234 325 36 24 chr4 24073628 24073711 -160214951 - L2 LINE L2 -527 2787 2704 2170 109 7 10 chr4 24073728 24074030 -160214632 + AluSg SINE Alu 5 305 -5 2447 86 0 13 chr4 24074032 24074346 -160214316 + AluY SINE Alu 1 310 -1 268 313 70 42 chr4 24074405 24074760 -160213902 - L2 LINE L2 -907 2407 2043 2807 166 34 57 chr4 24074785 24075279 -160213383 - MER34C LTR ERV1 0 585 81 212 0 36 0 chr4 24075279 24075307 -160213355 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2807 166 34 57 chr4 24075307 24075373 -160213289 - MER34C LTR ERV1 -504 81 37 4793 72 7 93 chr4 24075373 24075506 -160213156 - MER4A LTR ERV1 0 664 521 2075 137 3 0 chr4 24075506 24075805 -160212857 - AluSx SINE Alu -12 300 1 4793 72 7 93 chr4 24075805 24076398 -160212264 - MER4A LTR ERV1 -143 521 1 2807 166 34 57 chr4 24076398 24076431 -160212231 - MER34C LTR ERV1 -548 37 5 393 222 9 19 chr4 24076726 24076834 -160211828 + MIR SINE MIR 150 256 -6 274 314 157 0 chr4 24076868 24076970 -160211692 + MIR3 SINE MIR 68 185 -23 216 0 0 0 chr4 24077156 24077180 -160211482 + (T)n Simple_repeat Simple_repeat 1 24 0 23 54 0 0 chr4 24078939 24078976 -160209686 + AT_rich Low_complexity Low_complexity 1 37 0 27 62 0 0 chr4 24079090 24079138 -160209524 + AT_rich Low_complexity Low_complexity 1 48 0 2186 114 0 7 chr4 24079454 24079751 -160208911 - AluSx SINE Alu -17 295 1 214 216 40 68 chr4 24080239 24080313 -160208349 + MER5A DNA MER1_type 3 74 -115 228 323 0 0 chr4 24080399 24080461 -160208201 + tRNA-Ser(Sec) tRNA tRNA 1 62 -28 411 250 174 35 chr4 24081066 24081210 -160207452 - MER91A DNA MER1_type -14 182 19 461 89 41 27 chr4 24082065 24082211 -160206451 + (TA)n Simple_repeat Simple_repeat 1 148 0 1672 177 6 22 chr4 24084661 24084977 -160203685 - AluJb SINE Alu -1 311 1 189 0 0 0 chr4 24085276 24085297 -160203365 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 1899 166 0 10 chr4 24087166 24087462 -160201200 - AluJb SINE Alu -18 294 2 2233 113 0 0 chr4 24087487 24087780 -160200882 - AluSg SINE Alu -17 293 1 23 0 0 0 chr4 24087829 24087852 -160200810 + AT_rich Low_complexity Low_complexity 1 23 0 683 279 92 23 chr4 24088101 24088455 -160200207 - L1MC4a LINE L1 -360 5804 5519 1861 124 0 22 chr4 24088508 24088781 -160199881 - AluSx SINE Alu -45 267 1 210 207 35 0 chr4 24088856 24088914 -160199748 + T-rich Low_complexity Low_complexity 4 63 0 330 312 113 87 chr4 24089622 24090013 -160198649 - L2 LINE L2 -53 3219 2819 936 141 0 15 chr4 24090219 24090354 -160198308 - FLAM_C SINE Alu 0 133 1 2076 137 3 7 chr4 24090406 24090705 -160197957 - AluSx SINE Alu -14 298 1 275 253 91 30 chr4 24090743 24090842 -160197820 - L2 LINE L2 -7 3306 3202 346 165 25 0 chr4 24090895 24090974 -160197688 + CT-rich Low_complexity Low_complexity 3 83 0 2386 62 7 0 chr4 24091017 24091307 -160197355 - AluY SINE Alu -19 292 1 375 325 43 34 chr4 24092074 24092283 -160196379 - MIR SINE MIR -46 216 6 287 258 106 68 chr4 24093245 24093377 -160195285 + L2 LINE L2 3136 3272 0 1487 187 23 40 chr4 24093895 24094195 -160194467 - AluJo SINE Alu -17 295 1 870 164 8 0 chr4 24094261 24094395 -160194267 - AluJo SINE Alu -177 135 1 1263 240 25 21 chr4 24095134 24095459 -160193203 - MLT1A2 LTR MaLR -48 326 1 220 290 0 0 chr4 24095750 24095818 -160192844 - MIR SINE MIR -65 143 86 2453 81 0 3 chr4 24095831 24096141 -160192521 - AluSc SINE Alu 0 309 1 2183 91 0 20 chr4 24096350 24096648 -160192014 - AluY SINE Alu -19 292 1 1956 168 3 0 chr4 24098746 24099056 -160189606 - AluSx SINE Alu -1 311 1 3289 199 24 30 chr4 24099291 24099478 -160189184 + L1MB7 LINE L1 3153 3340 -2806 1547 187 28 11 chr4 24099478 24099611 -160189051 + AluJb SINE Alu 1 130 -182 2325 96 10 0 chr4 24099611 24099904 -160188758 + AluSx SINE Alu 1 296 -16 1547 187 28 11 chr4 24099904 24100054 -160188608 + AluJb SINE Alu 130 289 -23 3289 199 24 30 chr4 24100054 24100673 -160187989 + L1MB7 LINE L1 3340 3954 -2192 1362 185 37 63 chr4 24100682 24101091 -160187571 + MLT1C LTR MaLR 6 390 0 5087 145 30 1 chr4 24101091 24101905 -160186757 + L1MB7 LINE L1 5332 6168 -16 492 200 25 58 chr4 24101989 24102109 -160186553 - MER21B LTR ERV1 -364 499 384 441 76 0 0 chr4 24103206 24103272 -160185390 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 559 128 186 0 chr4 24103380 24103482 -160185180 - AluSq/x SINE Alu -191 122 2 355 255 136 66 chr4 24103493 24103723 -160184939 - L1ME4a LINE L1 0 6121 5909 698 183 0 23 chr4 24103723 24103854 -160184808 + FLAM_A SINE Alu 1 128 -5 355 255 136 66 chr4 24103854 24104029 -160184633 - L1ME4a LINE L1 -212 5909 5681 1936 138 0 10 chr4 24104107 24104398 -160184264 - AluSx SINE Alu -24 288 1 2002 96 0 0 chr4 24104405 24104655 -160184007 - AluSc SINE Alu -21 288 39 324 140 0 35 chr4 24105092 24105149 -160183513 + AluJo/FLAM SINE Alu 78 132 -170 1091 189 177 4 chr4 24105152 24105406 -160183256 + AluJo SINE Alu 2 299 -3 273 98 0 0 chr4 24105414 24105455 -160183207 + (GGGGA)n Simple_repeat Simple_repeat 3 43 0 204 231 0 0 chr4 24105458 24105497 -160183165 + GA-rich Low_complexity Low_complexity 1 39 0 2316 115 0 0 chr4 24106098 24106402 -160182260 - AluSx SINE Alu -8 304 1 3441 144 91 125 chr4 24107346 24108260 -160180402 - MER21A LTR ERV1 -36 895 13 226 100 20 0 chr4 24108256 24108275 -160180387 - LTR66 LTR ERVL -169 441 424 * 348 24 0 0 chr4 24108275 24108316 -160180346 + (TG)n Simple_repeat Simple_repeat 2 42 0 226 100 20 0 chr4 24108316 24108346 -160180316 - LTR66 LTR ERVL -186 424 391 2163 115 3 0 chr4 24108706 24108994 -160179668 + AluSp SINE Alu 3 291 -22 602 255 37 30 chr4 24109220 24109423 -160179239 - MIR SINE MIR 0 262 59 1772 119 51 34 chr4 24110335 24110630 -160178032 + AluSx SINE Alu 1 300 -12 243 250 80 20 chr4 24111273 24111373 -160177289 - L2 LINE L2 -25 3247 3142 647 281 30 0 chr4 24111835 24112034 -160176628 - MIR SINE MIR 0 262 58 1396 171 150 34 chr4 24112069 24112263 -160176399 - MLT1A1 LTR MaLR 0 365 195 2250 114 0 13 chr4 24112263 24112571 -160176091 - AluSx SINE Alu -8 304 1 1396 171 150 34 chr4 24112571 24112703 -160175959 - MLT1A1 LTR MaLR -170 195 1 2724 140 17 9 chr4 24113004 24113426 -160175236 + MER61B LTR ERV1 1 425 0 976 214 0 0 chr4 24113549 24113727 -160174935 - FRAM SINE Alu -1 175 1 621 298 18 22 chr4 24113876 24114104 -160174558 - MIR SINE MIR -12 250 24 429 264 134 19 chr4 24116226 24116442 -160172220 - MIR SINE MIR -10 252 12 1289 183 87 21 chr4 24117349 24117638 -160171024 + MER58B DNA MER1_type 28 335 -6 573 183 127 31 chr4 24117864 24117877 -160170785 - L1MA10 LINE L1 0 6317 6307 1692 161 24 13 chr4 24117877 24118175 -160170487 + AluJb SINE Alu 1 301 -11 573 183 127 31 chr4 24118175 24118382 -160170280 - L1MA10 LINE L1 -10 6307 5919 2603 141 12 73 chr4 24118465 24118880 -160169782 - MER101 LTR ERV1 0 474 94 1535 142 78 25 chr4 24118880 24119161 -160169501 - AluJb SINE Alu -16 296 1 2603 141 12 73 chr4 24119161 24119250 -160169412 - MER101 LTR ERV1 -380 94 1 1935 153 10 7 chr4 24119451 24119751 -160168911 - AluSx SINE Alu -11 301 1 2162 115 0 0 chr4 24119806 24120093 -160168569 - AluSx SINE Alu -25 287 1 1475 126 25 107 chr4 24120102 24120420 -160168242 + MLT1B LTR MaLR 13 496 -91 1001 202 68 65 chr4 24120535 24120857 -160167805 + L1MD2 LINE L1 6027 6349 -10 2975 141 69 20 chr4 24121154 24121493 -160167169 + Tigger3(Golem) DNA MER2_type 1 378 -2651 1912 150 0 14 chr4 24121493 24121808 -160166854 + AluJb SINE Alu 1 311 0 2975 141 69 20 chr4 24121808 24122005 -160166657 + Tigger3(Golem) DNA MER2_type 378 564 -2465 * 9527 107 64 12 chr4 24122001 24122699 -160165963 + Tigger3(Golem) DNA MER2_type 1470 2130 -899 2193 122 0 0 chr4 24122699 24122995 -160165667 - AluJb SINE Alu -16 296 1 9527 107 64 12 chr4 24122995 24123779 -160164883 + Tigger3(Golem) DNA MER2_type 2130 3029 0 1164 196 0 14 chr4 24123858 24124072 -160164590 + AluJo SINE Alu 1 211 -101 1981 180 24 3 chr4 24125080 24125414 -160163248 - MER58B DNA MER1_type 0 341 1 2348 82 0 7 chr4 24125785 24126078 -160162584 - AluY SINE Alu -20 291 1 232 326 65 11 chr4 24130181 24130273 -160158389 - MIR SINE MIR -157 105 9 247 256 128 96 chr4 24131473 24131638 -160157024 + HAL1 LINE L1 1161 1319 -1188 2343 92 7 0 chr4 24131638 24131941 -160156721 + AluSx SINE Alu 1 305 -7 247 256 128 96 chr4 24131941 24132145 -160156517 + HAL1 LINE L1 1319 1550 -957 2352 119 0 0 chr4 24132145 24132457 -160156205 + AluSx SINE Alu 1 312 0 247 256 128 96 chr4 24132457 24132546 -160156116 + HAL1 LINE L1 1550 1635 -872 1573 103 121 40 chr4 24132637 24132909 -160155753 + AluSg1 SINE Alu 3 296 -13 2103 118 14 3 chr4 24132951 24133247 -160155415 + AluSq SINE Alu 1 299 -14 452 284 129 64 chr4 24133854 24134022 -160154640 - HAL1 LINE L1 -629 1878 1722 2318 98 0 0 chr4 24134022 24134319 -160154343 - AluSg SINE Alu -13 297 1 452 284 129 64 chr4 24134319 24134600 -160154062 - HAL1 LINE L1 -785 1722 1400 513 83 42 21 chr4 24134602 24134746 -160153916 + (TA)n Simple_repeat Simple_repeat 2 148 0 418 274 47 102 chr4 24134750 24135348 -160153314 - HAL1 LINE L1 -1133 1374 810 1676 131 3 53 chr4 24135874 24136156 -160152506 - AluSq SINE Alu -45 268 1 23 0 0 0 chr4 24136317 24136340 -160152322 + AT_rich Low_complexity Low_complexity 1 23 0 304 311 15 8 chr4 24136623 24136755 -160151907 + MER5B DNA MER1_type 2 134 -44 2174 103 7 3 chr4 24137293 24137595 -160151067 + AluSx SINE Alu 6 308 -4 1217 142 18 36 chr4 24138347 24138566 -160150096 - L1MA5 LINE L1 -85 6215 6001 234 0 0 0 chr4 24139067 24139093 -160149569 + (CA)n Simple_repeat Simple_repeat 2 27 0 1828 139 20 20 chr4 24139254 24139426 -160149236 - AluJb SINE Alu -18 294 120 2121 97 73 0 chr4 24139426 24139714 -160148948 + AluSx SINE Alu 1 309 -3 1828 139 20 20 chr4 24139714 24139835 -160148827 - AluJb SINE Alu -191 121 1 327 232 22 103 chr4 24140152 24140337 -160148325 + MIR3 SINE MIR 30 199 -9 512 120 0 11 chr4 24140910 24141002 -160147660 + (CA)n Simple_repeat Simple_repeat 2 92 0 332 212 61 38 chr4 24141254 24141369 -160147293 + L1MC4a LINE L1 5874 5994 -1814 694 203 0 15 chr4 24141369 24141502 -160147160 + FLAM_A SINE Alu 1 131 -2 332 212 61 38 chr4 24141502 24141518 -160147144 + L1MC4a LINE L1 5994 6008 -1800 259 260 50 44 chr4 24141682 24141863 -160146799 - L1ME4a LINE L1 -58 6063 5882 545 263 20 40 chr4 24141917 24141990 -160146672 - L1ME4a LINE L1 -225 5896 5823 2173 133 0 0 chr4 24141990 24142291 -160146371 - AluSx SINE Alu -11 301 1 545 263 20 40 chr4 24142291 24142415 -160146247 - L1ME4a LINE L1 -298 5823 5703 494 91 0 0 chr4 24142415 24142492 -160146170 + Alu SINE Alu 234 310 -2 24 32 0 0 chr4 24142988 24143019 -160145643 + AT_rich Low_complexity Low_complexity 1 31 0 365 118 9 173 chr4 24143364 24143474 -160145188 - LTR9 LTR ERV1 -83 529 438 1942 139 17 0 chr4 24144268 24144556 -160144106 + AluSx SINE Alu 1 293 -19 1821 150 59 3 chr4 24144628 24144914 -160143748 - AluJb SINE Alu -8 304 3 26 0 0 0 chr4 24145081 24145107 -160143555 + AT_rich Low_complexity Low_complexity 1 26 0 2037 55 0 27 chr4 24145107 24145363 -160143299 - AluY SINE Alu -4 307 59 650 69 11 0 chr4 24145364 24145451 -160143211 - MSTA LTR MaLR -340 88 1 2215 154 22 6 chr4 24146220 24146578 -160142084 + THE1B LTR MaLR 1 364 0 10266 108 35 39 chr4 24146578 24148163 -160140499 + THE1B-int LTR MaLR 1 1580 0 2119 159 31 6 chr4 24148167 24148518 -160140144 + THE1B LTR MaLR 5 364 0 2264 131 6 11 chr4 24148628 24148980 -160139682 - Tigger7 DNA MER2_type 0 2487 2138 753 195 0 0 chr4 24148977 24149095 -160139567 - Tigger7 DNA MER2_type -2369 118 1 * 358 280 15 38 chr4 24149487 24149619 -160139043 - MIR SINE MIR -74 188 60 1888 170 52 19 chr4 24149622 24149987 -160138675 + MLT2B1 LTR ERVL 4 380 -140 237 37 0 0 chr4 24149978 24150005 -160138657 + MLT2B1 LTR ERVL 494 520 0 * 195 268 31 52 chr4 24151287 24151384 -160137278 - MIR SINE MIR -86 176 82 195 353 46 46 chr4 24152226 24152399 -160136263 + L2 LINE L2 2417 2589 -725 * 16467 181 5 11 chr4 24152395 24155472 -160133190 + HERVH LTR ERV1 4656 7713 0 509 252 68 34 chr4 24155755 24155961 -160132701 + LTR7 LTR ERV1 238 450 0 398 307 17 28 chr4 24156365 24156541 -160132121 + L2 LINE L2 3117 3290 -23 673 292 93 16 chr4 24156559 24156804 -160131858 - MIR SINE MIR -1 261 4 1121 235 24 8 chr4 24157012 24157263 -160131399 - AluJo SINE Alu -57 255 1 24 67 0 0 chr4 24157872 24157917 -160130745 + AT_rich Low_complexity Low_complexity 1 45 0 484 285 181 14 chr4 24158467 24158688 -160129974 + MIR SINE MIR 4 261 -1 1994 107 7 0 chr4 24159177 24159448 -160129214 + AluSq SINE Alu 38 310 -3 380 294 14 41 chr4 24159743 24159889 -160128773 + L1ME LINE L1 5518 5659 -462 425 223 48 0 chr4 24160556 24160659 -160128003 + MIR SINE MIR 82 189 -73 450 303 25 0 chr4 24160845 24160964 -160127698 - LTR16A LTR ERVL -88 362 241 4016 171 23 8 chr4 24161496 24162200 -160126462 - MER72 LTR ERV1 0 722 9 402 139 14 14 chr4 24162628 24162700 -160125962 + AluS SINE Alu 3 74 -227 278 105 0 0 chr4 24162681 24162719 -160125943 - Tigger3b DNA MER2_type -719 513 476 * 2684 205 8 17 chr4 24162724 24163250 -160125412 - Tigger3b DNA MER2_type -703 528 8 27 62 0 0 chr4 24163718 24163766 -160124896 + AT_rich Low_complexity Low_complexity 1 48 0 343 293 98 46 chr4 24164162 24164469 -160124193 + L1M4 LINE L1 3166 3488 -2658 198 0 0 0 chr4 24164817 24164839 -160123823 + (T)n Simple_repeat Simple_repeat 1 22 0 423 323 35 28 chr4 24165070 24165324 -160123338 + L1M4 LINE L1 3589 3844 -2302 208 196 36 0 chr4 24165325 24165381 -160123281 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 242 264 184 24 chr4 24165392 24165464 -160123198 + L1M4 LINE L1 3859 3918 -2228 1357 241 22 17 chr4 24165464 24165821 -160122841 + MLT1A1 LTR MaLR 3 361 -4 242 264 184 24 chr4 24165821 24165960 -160122702 + L1M4 LINE L1 3918 4104 -2042 242 333 0 11 chr4 24166720 24166807 -160121855 + GA-rich Low_complexity Low_complexity 3 88 0 678 316 53 19 chr4 24167103 24167514 -160121148 - L1ME LINE L1 -417 5822 5398 362 315 98 33 chr4 24167517 24167968 -160120694 - L1ME LINE L1 -3265 2950 2471 354 271 113 30 chr4 24168200 24168403 -160120259 - L1ME LINE L1 -4144 2252 2033 288 0 0 0 chr4 24168476 24168508 -160120154 + (TC)n Simple_repeat Simple_repeat 1 32 0 35 24 0 0 chr4 24168943 24168985 -160119677 + AT_rich Low_complexity Low_complexity 1 42 0 374 329 27 27 chr4 24169004 24169126 -160119536 + MIR SINE MIR 19 143 -119 276 30 0 0 chr4 24169126 24169159 -160119503 + (TAA)n Simple_repeat Simple_repeat 3 35 0 374 329 27 27 chr4 24169159 24169182 -160119480 + MIR SINE MIR 142 164 -98 2403 116 50 31 chr4 24169427 24169849 -160118813 - MER57B LTR ERV1 0 434 5 305 295 9 0 chr4 24169853 24169958 -160118704 - L1ME LINE L1 -5308 897 792 496 372 26 50 chr4 24170200 24170582 -160118080 - L1ME LINE L1 -5746 459 87 827 264 98 37 chr4 24172775 24173123 -160115539 - L2 LINE L2 -56 3257 2889 670 328 40 37 chr4 24173120 24173371 -160115291 - L2 LINE L2 -861 2453 2199 * 225 0 0 0 chr4 24173371 24173396 -160115266 + (TG)n Simple_repeat Simple_repeat 2 26 0 670 328 40 37 chr4 24173396 24173495 -160115167 - L2 LINE L2 -1115 2199 2102 661 294 15 64 chr4 24173496 24173826 -160114836 + Charlie2 DNA MER1_type 9 322 -2540 607 264 124 8 chr4 24173833 24174083 -160114579 + Charlie2 DNA MER1_type 1870 2148 -714 696 244 75 137 chr4 24174094 24174611 -160114051 - L2 LINE L2 -1794 1520 1036 14847 167 19 11 chr4 24174704 24176442 -160112220 - L1MA3 LINE L1 0 7724 6002 2780 77 40 64 chr4 24176442 24176528 -160112134 - MLT2A1 LTR ERVL 0 444 357 207 0 0 0 chr4 24176528 24176551 -160112111 + (TA)n Simple_repeat Simple_repeat 1 23 0 2780 77 40 64 chr4 24176551 24176919 -160111743 - MLT2A1 LTR ERVL -87 357 1 14847 167 19 11 chr4 24176919 24180877 -160107785 - L1MA3 LINE L1 -1722 6002 1977 470 314 81 23 chr4 24180942 24181114 -160107548 + MIR SINE MIR 81 262 0 191 320 0 0 chr4 24181306 24181356 -160107306 - L2 LINE L2 -245 3027 2978 1668 194 3 3 chr4 24181446 24181740 -160106922 + AluJb SINE Alu 1 294 -18 21 36 0 0 chr4 24181745 24181773 -160106889 + AT_rich Low_complexity Low_complexity 1 28 0 1672 229 62 33 chr4 24182687 24183172 -160105490 + MLT1D LTR MaLR 5 503 -2 351 209 55 82 chr4 24184560 24184670 -160103992 - MLT1H LTR MaLR -27 522 409 900 269 9 0 chr4 24184997 24185213 -160103449 + MER8 DNA MER2_type 1 218 -21 1225 224 107 68 chr4 24186047 24186793 -160101869 + Zaphod DNA AcHobo 544 1318 -2713 1121 83 7 0 chr4 24186841 24186985 -160101677 - AluSp SINE Alu -168 145 1 1310 236 89 126 chr4 24186988 24187395 -160101267 + Zaphod DNA AcHobo 1545 1965 -2066 2092 112 0 3 chr4 24187395 24187704 -160100958 + AluY SINE Alu 1 308 0 1310 236 89 126 chr4 24187704 24188250 -160100412 + Zaphod DNA AcHobo 1965 2453 -1578 2392 72 0 0 chr4 24188250 24188543 -160100119 + AluSp SINE Alu 1 293 -20 1310 236 89 126 chr4 24188543 24188732 -160099930 + Zaphod DNA AcHobo 2453 2647 -1384 309 288 75 14 chr4 24188770 24188916 -160099746 + Zaphod DNA AcHobo 3005 3159 -872 556 109 16 78 chr4 24188916 24189044 -160099618 - L1MB8 LINE L1 0 6178 6059 2347 90 0 7 chr4 24189052 24189362 -160099300 - AluSp SINE Alu -5 308 1 3726 177 60 41 chr4 24189375 24190218 -160098444 - L1MB7 LINE L1 -7 6177 5319 1331 184 20 44 chr4 24190225 24190518 -160098144 - AluJo SINE Alu -26 286 1 1691 236 104 20 chr4 24190538 24191271 -160097391 + Zaphod DNA AcHobo 3150 3943 -88 24 53 0 0 chr4 24191271 24191309 -160097353 + AT_rich Low_complexity Low_complexity 1 38 0 950 284 113 11 chr4 24192309 24192679 -160095983 + MLT1I LTR MaLR 2 409 0 197 176 0 20 chr4 24193486 24193537 -160095125 + (TA)n Simple_repeat Simple_repeat 2 51 0 407 247 10 0 chr4 24194242 24194339 -160094323 - L1MD2 LINE L1 -14 6345 6248 379 232 24 0 chr4 24194395 24194477 -160094185 + MER5B DNA MER1_type 2 85 -93 1230 249 76 32 chr4 24194489 24194899 -160093763 + MLT2B1 LTR ERVL 1 428 -92 30 97 0 0 chr4 24194968 24195061 -160093601 + AT_rich Low_complexity Low_complexity 1 93 0 244 191 29 15 chr4 24195065 24195133 -160093529 + MLT2A1 LTR ERVL 368 436 -8 255 299 30 0 chr4 24195137 24195204 -160093458 + MER5B DNA MER1_type 103 171 -7 300 102 0 0 chr4 24195250 24195299 -160093363 + (TG)n Simple_repeat Simple_repeat 2 50 0 320 260 73 0 chr4 24195947 24196043 -160092619 - MLT1J2 LTR MaLR -323 127 25 759 252 128 4 chr4 24196479 24196705 -160091957 - MIR SINE MIR -4 258 5 477 242 67 0 chr4 24196741 24196861 -160091801 - L1MD2 LINE L1 -16 6343 6216 2549 243 23 17 chr4 24196928 24197573 -160091089 - L1MD2 LINE L1 -279 6080 5432 257 322 34 35 chr4 24197626 24197817 -160090845 + MIR SINE MIR 34 222 -40 1139 179 40 10 chr4 24197855 24198020 -160090642 - AluJb SINE Alu -17 295 121 243 0 0 0 chr4 24198020 24198047 -160090615 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1139 179 40 10 chr4 24198047 24198082 -160090580 - AluJb SINE Alu -191 121 89 325 302 24 8 chr4 24198299 24198425 -160090237 - MIR3 SINE MIR -5 203 76 1175 263 76 3 chr4 24199021 24199215 -160089447 - L1MD2 LINE L1 -21 6338 6160 231 36 0 0 chr4 24199215 24199243 -160089419 + (TG)n Simple_repeat Simple_repeat 2 29 0 1175 263 76 3 chr4 24199243 24199417 -160089245 - L1MD2 LINE L1 -199 6160 5943 * 2897 197 71 16 chr4 24199415 24199502 -160089160 - L1MDa LINE L1 -3689 2851 2770 1627 134 46 31 chr4 24199502 24199763 -160088899 - AluSx SINE Alu -6 306 42 2897 197 71 16 chr4 24199763 24200546 -160088116 - L1MDa LINE L1 -3770 2770 1917 1382 246 33 33 chr4 24200543 24200942 -160087720 - L1MDa LINE L1 -5359 1184 786 * 306 298 112 17 chr4 24201123 24201301 -160087361 - L1MDa LINE L1 -6319 221 27 181 210 40 110 chr4 24201308 24201408 -160087254 - MIR SINE MIR -46 216 124 622 249 122 33 chr4 24202238 24202451 -160086211 + MIR SINE MIR 31 262 0 183 138 0 0 chr4 24202444 24202473 -160086189 - MIR SINE MIR -108 154 126 * 1134 229 62 43 chr4 24202783 24203154 -160085508 + MER58D DNA MER1_type 1 378 -8 621 341 67 5 chr4 24203939 24204162 -160084500 + MIR SINE MIR 26 262 0 254 308 84 42 chr4 24204162 24204305 -160084357 - MIR3 SINE MIR -17 191 43 212 313 40 10 chr4 24204642 24204741 -160083921 - MIR SINE MIR -3 259 158 776 246 11 11 chr4 24205093 24205280 -160083382 - MER5A DNA MER1_type -1 188 2 242 281 18 18 chr4 24205527 24205584 -160083078 + MIR SINE MIR 30 86 -122 23 0 0 0 chr4 24206723 24206746 -160081916 + AT_rich Low_complexity Low_complexity 1 23 0 181 171 171 0 chr4 24207373 24207408 -160081254 - L2 LINE L2 -31 3282 3242 240 100 0 0 chr4 24208661 24208701 -160079961 + (CGG)n Simple_repeat Simple_repeat 2 41 0 21 0 0 0 chr4 24213424 24213445 -160075217 + AT_rich Low_complexity Low_complexity 1 21 0 222 233 192 0 chr4 24214286 24214359 -160074303 - MER5A DNA MER1_type -77 112 26 24 67 0 0 chr4 24215032 24215077 -160073585 + AT_rich Low_complexity Low_complexity 1 45 0 25 31 0 0 chr4 24215514 24215546 -160073116 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr4 24216678 24216708 -160071954 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr4 24217123 24217151 -160071511 + AT_rich Low_complexity Low_complexity 1 28 0 295 345 18 0 chr4 24217520 24217633 -160071029 + CT-rich Low_complexity Low_complexity 5 119 0 340 302 124 7 chr4 24220312 24220481 -160068181 + MIR SINE MIR 66 252 -10 24 53 0 0 chr4 24220836 24220874 -160067788 + AT_rich Low_complexity Low_complexity 1 38 0 22 35 0 0 chr4 24221898 24221927 -160066735 + AT_rich Low_complexity Low_complexity 1 29 0 300 315 28 0 chr4 24222645 24222753 -160065909 + MIR SINE MIR 128 238 -24 286 314 132 66 chr4 24223308 24223642 -160065020 - L2 LINE L2 -36 3236 2881 450 347 139 24 chr4 24224143 24224431 -160064231 - L3 LINE CR1 -15 1562 1242 347 132 59 7 chr4 24228020 24228172 -160060490 + (TA)n Simple_repeat Simple_repeat 1 160 0 423 250 23 17 chr4 24229862 24230034 -160058628 - L1ME4a LINE L1 0 6121 5949 215 290 14 14 chr4 24230073 24230142 -160058520 + L2 LINE L2 3203 3271 -1 254 348 25 8 chr4 24231930 24232048 -160056614 + MIR SINE MIR 52 171 -91 32 0 0 0 chr4 24232655 24232687 -160055975 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr4 24233019 24233040 -160055622 + AT_rich Low_complexity Low_complexity 1 21 0 35 0 0 0 chr4 24234023 24234058 -160054604 + AT_rich Low_complexity Low_complexity 1 35 0 700 223 13 6 chr4 24234392 24234549 -160054113 + Tigger3(Golem) DNA MER2_type 128 285 -2744 21 0 0 0 chr4 24234656 24234677 -160053985 + AT_rich Low_complexity Low_complexity 1 21 0 206 32 32 0 chr4 24235530 24235561 -160053101 + (CAAAAA)n Simple_repeat Simple_repeat 4 35 0 495 317 73 19 chr4 24236438 24236643 -160052019 + MIR SINE MIR 24 239 -23 2552 62 0 0 chr4 24236951 24237255 -160051407 + AluY SINE Alu 1 304 -7 183 380 14 0 chr4 24237387 24237458 -160051204 + L2 LINE L2 3198 3269 -44 2371 90 0 0 chr4 24237734 24238033 -160050629 - AluSp SINE Alu -14 299 1 22 56 0 0 chr4 24239405 24239441 -160049221 + AT_rich Low_complexity Low_complexity 1 36 0 263 283 79 13 chr4 24239490 24239642 -160049020 - MER103 DNA DNA -1 165 4 216 0 0 0 chr4 24240021 24240045 -160048617 + (CA)n Simple_repeat Simple_repeat 1 24 0 21 36 0 0 chr4 24240651 24240679 -160047983 + AT_rich Low_complexity Low_complexity 1 28 0 1727 192 14 0 chr4 24242451 24242748 -160045914 - AluJb SINE Alu -11 301 1 257 248 248 46 chr4 24242863 24243016 -160045646 - MIR SINE MIR -36 226 43 2061 121 4 4 chr4 24243420 24243701 -160044961 + AluSx SINE Alu 1 281 -31 255 340 0 47 chr4 24243818 24243924 -160044738 - MIR SINE MIR -99 163 63 284 279 39 47 chr4 24244627 24244756 -160043906 + L2 LINE L2 3182 3309 -4 281 267 172 0 chr4 24245177 24245293 -160043369 + MIR SINE MIR 117 252 -10 262 259 24 12 chr4 24245554 24245639 -160043023 - MLT1L LTR MaLR -23 592 507 192 254 51 0 chr4 24246479 24246538 -160042124 - MIR SINE MIR -70 192 131 461 267 30 67 chr4 24246542 24246677 -160041985 + L2 LINE L2 3179 3308 -5 333 273 62 150 chr4 24246802 24247150 -160041512 + L2 LINE L2 2825 3119 -153 1262 181 96 63 chr4 24247150 24247482 -160041180 - MER2 DNA MER2_type 0 344 2 333 273 62 150 chr4 24247482 24247621 -160041041 + L2 LINE L2 3119 3269 -3 364 314 138 42 chr4 24247816 24248077 -160040585 + L2 LINE L2 2987 3272 0 316 280 0 40 chr4 24248240 24248315 -160040347 + MER91A DNA MER1_type 22 93 -103 288 0 0 0 chr4 24248348 24248380 -160040282 + (TA)n Simple_repeat Simple_repeat 2 33 0 261 0 0 0 chr4 24248380 24248409 -160040253 + (T)n Simple_repeat Simple_repeat 1 29 0 235 264 14 43 chr4 24248509 24248649 -160040013 + Charlie7 DNA MER1_type 2471 2606 -6 354 45 0 0 chr4 24248790 24248834 -160039828 + (TG)n Simple_repeat Simple_repeat 1 44 0 309 304 81 20 chr4 24249137 24249285 -160039377 + MIR SINE MIR 20 176 -86 485 170 10 30 chr4 24249286 24249386 -160039276 + FLAM_A SINE Alu 31 128 -14 2062 147 0 3 chr4 24250951 24251250 -160037412 + AluSx SINE Alu 3 300 -12 311 389 15 15 chr4 24251706 24251904 -160036758 + L3 LINE CR1 1094 1291 -286 27 0 0 0 chr4 24252621 24252648 -160036014 + AT_rich Low_complexity Low_complexity 1 27 0 27 29 0 0 chr4 24254059 24254093 -160034569 + AT_rich Low_complexity Low_complexity 1 34 0 2398 88 0 0 chr4 24254966 24255272 -160033390 - AluSp SINE Alu -7 306 1 21 57 0 0 chr4 24256162 24256197 -160032465 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr4 24257015 24257037 -160031625 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr4 24257344 24257366 -160031296 + AT_rich Low_complexity Low_complexity 1 22 0 222 278 0 0 chr4 24257462 24257516 -160031146 + (CA)n Simple_repeat Simple_repeat 1 54 0 28 29 0 0 chr4 24258063 24258098 -160030564 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr4 24259919 24259947 -160028715 + AT_rich Low_complexity Low_complexity 1 28 0 214 267 107 69 chr4 24260967 24261098 -160027564 + L2 LINE L2 3178 3313 0 223 204 20 0 chr4 24261152 24261201 -160027461 + GA-rich Low_complexity Low_complexity 2 51 0 239 273 78 7 chr4 24261311 24261438 -160027224 + MLT1I LTR MaLR 22 168 -241 324 315 19 9 chr4 24261501 24261609 -160027053 + MLT1G1 LTR MaLR 246 354 -241 263 238 4 26 chr4 24261696 24261784 -160026878 + MLT1H1 LTR MaLR 491 584 -6 2153 100 7 0 chr4 24262476 24262801 -160025861 + AluSx SINE Alu 3 329 0 181 333 48 38 chr4 24263569 24263674 -160024988 + L2 LINE L2 2920 3025 -247 28 29 0 0 chr4 24263788 24263823 -160024839 + AT_rich Low_complexity Low_complexity 1 35 0 251 178 0 14 chr4 24263891 24263964 -160024698 + CT-rich Low_complexity Low_complexity 1 72 0 891 174 0 0 chr4 24264001 24264179 -160024483 + CT-rich Low_complexity Low_complexity 3 180 0 1352 188 29 11 chr4 24264185 24264457 -160024205 - AluJo SINE Alu -35 277 1 497 266 75 49 chr4 24264578 24264804 -160023858 - MIR SINE MIR -6 256 25 189 371 52 21 chr4 24264831 24264928 -160023734 - L2 LINE L2 -32 3281 3182 453 297 51 29 chr4 24265368 24265543 -160023119 + MIR SINE MIR 14 192 -70 2486 58 0 6 chr4 24266648 24266959 -160021703 - AluY SINE Alu -2 309 1 1445 209 3 17 chr4 24267791 24268087 -160020575 - AluJo SINE Alu -20 292 1 23 68 0 0 chr4 24269336 24269380 -160019282 + AT_rich Low_complexity Low_complexity 1 44 0 2203 119 3 7 chr4 24269390 24269700 -160018962 + AluSc SINE Alu 1 309 0 2425 173 9 2 chr4 24270017 24270438 -160018224 - MSTB LTR MaLR 0 426 3 1704 151 63 3 chr4 24270515 24270833 -160017829 - MER1B DNA MER1_type 0 337 1 300 326 118 7 chr4 24271013 24271148 -160017514 + MIR SINE MIR 1 150 -112 334 273 71 10 chr4 24271329 24271428 -160017234 - L2 LINE L2 -18 3295 3191 376 292 79 39 chr4 24271589 24271894 -160016768 + L1M4 LINE L1 5266 5582 -596 38 0 0 0 chr4 24271903 24271941 -160016721 + AT_rich Low_complexity Low_complexity 1 38 0 31 26 0 0 chr4 24273528 24273566 -160015096 + AT_rich Low_complexity Low_complexity 1 38 0 357 263 139 7 chr4 24274409 24274546 -160014116 + MIR SINE MIR 37 191 -71 232 246 18 0 chr4 24276536 24276593 -160012069 + L2 LINE L2 3256 3313 0 201 59 88 0 chr4 24276699 24276733 -160011929 + A-rich Low_complexity Low_complexity 2 38 0 302 257 51 105 chr4 24277216 24277369 -160011293 + MIR SINE MIR 16 158 -61 1487 142 150 0 chr4 24277779 24278059 -160010603 + AluSx SINE Alu 1 317 0 563 207 25 0 chr4 24278770 24278891 -160009771 + MER5A DNA MER1_type 1 124 -65 1527 142 40 98 chr4 24279052 24279398 -160009264 - MER4A LTR ERV1 0 664 339 316 292 10 10 chr4 24279876 24279972 -160008690 - MIR SINE MIR -50 212 117 222 302 0 16 chr4 24280732 24280795 -160007867 + L2 LINE L2 3203 3264 -8 818 205 49 19 chr4 24281450 24281655 -160007007 + L1MA8 LINE L1 6059 6269 -22 628 200 0 61 chr4 24281659 24281766 -160006896 + L1MA10 LINE L1 6170 6265 -69 332 66 279 0 chr4 24281766 24281827 -160006835 + MADE1 DNA Mariner 3 80 0 628 200 0 61 chr4 24281827 24281884 -160006778 + L1MA10 LINE L1 6265 6324 -10 305 285 32 32 chr4 24281914 24282037 -160006625 + CT-rich Low_complexity Low_complexity 5 127 0 216 0 0 0 chr4 24283645 24283669 -160004993 + (T)n Simple_repeat Simple_repeat 1 24 0 187 370 0 0 chr4 24284008 24284089 -160004573 + L2 LINE L2 2190 2270 -1044 21 57 0 0 chr4 24284590 24284625 -160004037 + AT_rich Low_complexity Low_complexity 1 35 0 250 226 0 65 chr4 24285755 24285817 -160002845 + MER4-int LTR ERV1 1105 1162 -5436 297 297 38 65 chr4 24286038 24286223 -160002439 - L2 LINE L2 0 3313 3134 21 89 0 0 chr4 24286249 24286305 -160002357 + AT_rich Low_complexity Low_complexity 1 56 0 203 316 0 0 chr4 24286877 24286956 -160001706 + T-rich Low_complexity Low_complexity 1 79 0 229 242 53 53 chr4 24288406 24288501 -160000161 - MIR SINE MIR 0 262 168 1870 201 38 2 chr4 24288511 24288929 -159999733 - L1MB7 LINE L1 0 6184 5752 476 163 38 3 chr4 24339124 24339228 -159949434 - L1MC2 LINE L1 0 6333 6226 193 262 0 0 chr4 24339247 24339289 -159949373 - L3 LINE CR1 -480 1097 1056 40 37 0 0 chr4 24340522 24340576 -159948086 + AT_rich Low_complexity Low_complexity 1 54 0 25 65 0 0 chr4 24340649 24340695 -159947967 + AT_rich Low_complexity Low_complexity 1 46 0 744 262 37 0 chr4 24340763 24340950 -159947712 + MIR SINE MIR 32 225 -37 408 353 140 39 chr4 24341628 24342200 -159946462 - L2 LINE L2 -618 2696 2067 456 252 129 7 chr4 24343139 24343294 -159945368 + MIR SINE MIR 83 256 -6 35 41 0 0 chr4 24343350 24343399 -159945263 + AT_rich Low_complexity Low_complexity 1 49 0 22 56 0 0 chr4 24344331 24344367 -159944295 + AT_rich Low_complexity Low_complexity 1 36 0 213 65 0 0 chr4 24345039 24345070 -159943592 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 180 77 0 0 chr4 24345318 24345344 -159943318 + (CAAAAA)n Simple_repeat Simple_repeat 3 28 0 422 289 223 9 chr4 24345765 24345976 -159942686 + MIR SINE MIR 7 262 0 32 0 0 0 chr4 24346849 24346881 -159941781 + AT_rich Low_complexity Low_complexity 1 32 0 1181 265 53 52 chr4 24347125 24347987 -159940675 + L1ME LINE L1 4888 5759 -411 6453 84 10 37 chr4 24349312 24350482 -159938180 - L1PA11 LINE L1 -8 6166 5029 2388 76 6 22 chr4 24350482 24350797 -159937865 - AluSx SINE Alu -2 310 1 6453 84 10 37 chr4 24350797 24351414 -159937248 - L1PA11 LINE L1 -1145 5029 4397 503 280 33 22 chr4 24351556 24351738 -159936924 - MIR SINE MIR -64 198 15 437 296 43 37 chr4 24351791 24351953 -159936709 - MIR SINE MIR -93 169 7 724 199 11 11 chr4 24352891 24353067 -159935595 - L1MB7 LINE L1 -1 6183 6008 271 260 65 0 chr4 24353070 24353147 -159935515 - L1M4 LINE L1 -1242 5140 5059 767 253 12 8 chr4 24353154 24353399 -159935263 - L1M4 LINE L1 -1437 4945 4700 * 1897 237 110 60 chr4 24353368 24355283 -159933379 - L1M4 LINE L1 -3143 3239 1221 2460 59 0 0 chr4 24355373 24355677 -159932985 + AluY SINE Alu 1 304 -7 297 166 0 70 chr4 24355979 24356070 -159932592 - MIR SINE MIR -23 185 106 1472 182 101 46 chr4 24356388 24356756 -159931906 - MLT1B LTR MaLR 0 390 3 232 328 39 42 chr4 24357247 24357383 -159931279 + MIR SINE MIR 14 153 -55 183 156 0 0 chr4 24357661 24357693 -159930969 + (TA)n Simple_repeat Simple_repeat 2 33 0 229 300 0 0 chr4 24357693 24357783 -159930879 - L1MC4 LINE L1 -1339 6703 6614 1904 100 8 0 chr4 24357790 24358039 -159930623 - AluSc SINE Alu -36 273 23 189 296 93 68 chr4 24358040 24358320 -159930342 + L2 LINE L2 2946 3232 -81 31 26 0 0 chr4 24359515 24359553 -159929109 + AT_rich Low_complexity Low_complexity 1 38 0 475 338 48 13 chr4 24359737 24359911 -159928751 + MIR SINE MIR 21 206 -56 387 0 0 0 chr4 24359911 24359954 -159928708 + (TG)n Simple_repeat Simple_repeat 2 44 0 475 338 48 13 chr4 24359954 24360007 -159928655 + MIR SINE MIR 206 256 -6 243 270 48 0 chr4 24360624 24360687 -159927975 - L2 LINE L2 0 3313 3248 25 0 0 0 chr4 24360718 24360743 -159927919 + AT_rich Low_complexity Low_complexity 1 25 0 261 295 124 0 chr4 24360758 24360863 -159927799 - MIR SINE MIR -50 212 95 277 207 24 12 chr4 24360867 24360949 -159927713 + GA-rich Low_complexity Low_complexity 3 85 0 1451 234 39 12 chr4 24360951 24361284 -159927378 + MLT1A2 LTR MaLR 33 374 0 283 159 0 58 chr4 24362691 24362760 -159925902 + MER116 DNA Mariner 11 75 -5 358 291 250 16 chr4 24362772 24363088 -159925574 - L2 LINE L2 -94 3219 2830 28 0 0 0 chr4 24363668 24363696 -159924966 + AT_rich Low_complexity Low_complexity 1 28 0 229 147 0 0 chr4 24365574 24365635 -159923027 + Alu SINE Alu 247 307 0 372 269 65 0 chr4 24366302 24366395 -159922267 + L2 LINE L2 3142 3240 -32 439 322 71 0 chr4 24367054 24367237 -159921425 - MIR SINE MIR -62 200 5 536 310 132 53 chr4 24369634 24370172 -159918490 - L2 LINE L2 -1 3312 2734 252 0 0 0 chr4 24371623 24371651 -159917011 + (TTTTTA)n Simple_repeat Simple_repeat 2 29 0 201 74 0 0 chr4 24372179 24372206 -159916456 + (TC)n Simple_repeat Simple_repeat 2 28 0 201 197 0 0 chr4 24372205 24372271 -159916391 + (TG)n Simple_repeat Simple_repeat 1 66 0 213 65 0 0 chr4 24372304 24372335 -159916327 + (GGAA)n Simple_repeat Simple_repeat 2 32 0 21 0 0 0 chr4 24372766 24372787 -159915875 + AT_rich Low_complexity Low_complexity 1 21 0 2300 92 7 3 chr4 24374448 24374754 -159913908 + AluSp SINE Alu 1 307 -6 197 402 10 0 chr4 24374993 24375090 -159913572 - L2 LINE L2 -666 2648 2551 312 281 96 15 chr4 24375249 24375384 -159913278 - L1ME LINE L1 -336 5785 5640 187 295 144 22 chr4 24375529 24375668 -159912994 - L2 LINE L2 -11 3302 3147 197 200 0 0 chr4 24376236 24376276 -159912386 - L2 LINE L2 -20 3252 3213 785 284 18 0 chr4 24376850 24377068 -159911594 + MER58A DNA MER1_type 3 224 0 385 230 11 11 chr4 24377206 24377293 -159911369 + MIR SINE MIR 165 251 -11 2076 268 73 39 chr4 24377304 24377575 -159911087 + L2 LINE L2 2170 2430 -883 1561 204 3 3 chr4 24377575 24377864 -159910798 + AluJb SINE Alu 1 289 -23 2529 67 0 10 chr4 24377873 24378186 -159910476 + AluY SINE Alu 1 310 -1 2076 268 73 39 chr4 24378186 24378477 -159910185 + L2 LINE L2 2437 2717 -596 2216 129 25 25 chr4 24378477 24378841 -159909821 - THE1B LTR MaLR 0 364 1 2076 268 73 39 chr4 24378841 24379357 -159909305 + L2 LINE L2 2717 3309 -4 1987 184 54 31 chr4 24379485 24379931 -159908731 - MLT1C LTR MaLR 0 467 12 279 360 117 9 chr4 24380034 24380145 -159908517 - L2 LINE L2 -16 3256 3134 374 114 14 0 chr4 24381727 24381797 -159906865 + (TC)n Simple_repeat Simple_repeat 2 72 0 21 36 0 0 chr4 24382179 24382207 -159906455 + AT_rich Low_complexity Low_complexity 1 28 0 2482 59 0 16 chr4 24382480 24382786 -159905876 + AluY SINE Alu 1 301 -10 243 0 0 0 chr4 24383825 24383852 -159904810 + (A)n Simple_repeat Simple_repeat 1 27 0 213 267 44 0 chr4 24383907 24383952 -159904710 - L2 LINE L2 -23 3290 3244 189 346 0 0 chr4 24386023 24386075 -159902587 + MIR SINE MIR 49 100 -162 315 261 134 28 chr4 24386235 24386377 -159902285 - L3b LINE CR1 -248 1335 1179 1789 147 3 64 chr4 24388549 24388863 -159899799 - AluSx SINE Alu -17 295 1 2280 104 0 0 chr4 24388880 24389178 -159899484 - AluSc SINE Alu -11 298 1 33 56 0 0 chr4 24389299 24389353 -159899309 + AT_rich Low_complexity Low_complexity 1 54 0 2340 94 7 0 chr4 24389642 24389949 -159898713 - AluSg SINE Alu -1 309 1 195 213 85 0 chr4 24392468 24392515 -159896147 + L2 LINE L2 3201 3251 -62 * 376 287 84 6 chr4 24392501 24392668 -159895994 + MIR SINE MIR 61 240 -22 566 246 69 69 chr4 24393700 24393903 -159894759 - MIR SINE MIR -2 260 58 518 299 161 0 chr4 24394004 24394221 -159894441 - MIR SINE MIR -8 254 3 23 0 0 0 chr4 24395001 24395024 -159893638 + AT_rich Low_complexity Low_complexity 1 23 0 756 163 36 18 chr4 24395785 24396059 -159892603 + L1MB7 LINE L1 5748 6172 -12 265 385 37 15 chr4 24397591 24397726 -159890936 - L2 LINE L2 -219 3053 2916 22 0 0 0 chr4 24397743 24397765 -159890897 + AT_rich Low_complexity Low_complexity 1 22 0 181 321 160 0 chr4 24397925 24398031 -159890631 + L2 LINE L2 3141 3263 -9 225 275 37 64 chr4 24398133 24398242 -159890420 - MIR SINE MIR -72 190 85 535 143 0 0 chr4 24398384 24398468 -159890194 + L1MB3 LINE L1 6075 6158 -25 383 286 36 54 chr4 24398657 24398825 -159889837 + MER5A DNA MER1_type 1 165 -24 * 448 301 31 25 chr4 24398692 24398855 -159889807 - MER5A DNA MER1_type -23 166 3 484 281 156 18 chr4 24398930 24399154 -159889508 + MIR SINE MIR 2 256 -6 2238 107 3 3 chr4 24400106 24400405 -159888257 - AluSx SINE Alu -13 299 1 28 48 0 0 chr4 24400565 24400607 -159888055 + AT_rich Low_complexity Low_complexity 1 42 0 1405 169 31 36 chr4 24400610 24400981 -159887681 - L1MA8 LINE L1 -22 6269 5912 697 92 10 0 chr4 24400979 24401077 -159887585 + L1MA7 LINE L1 5853 5951 -340 * 276 319 73 5 chr4 24401240 24401363 -159887299 - MIR SINE MIR -64 144 49 1010 320 131 16 chr4 24401534 24402105 -159886557 - L2 LINE L2 -353 2961 2325 248 306 120 34 chr4 24402105 24402314 -159886348 - L2 LINE L2 -649 2665 2439 909 309 8 4 chr4 24403190 24403436 -159885226 - MIR SINE MIR -6 256 10 435 231 0 0 chr4 24403691 24403799 -159884863 + (TA)n Simple_repeat Simple_repeat 2 109 0 2311 90 0 7 chr4 24403835 24404136 -159884526 + AluY SINE Alu 1 299 -12 303 279 31 93 chr4 24405507 24405668 -159882994 + MIR SINE MIR 106 256 -6 23 33 0 0 chr4 24406451 24406481 -159882181 + AT_rich Low_complexity Low_complexity 1 30 0 31 26 0 0 chr4 24407805 24407843 -159880819 + AT_rich Low_complexity Low_complexity 1 38 0 2138 108 7 3 chr4 24409999 24410296 -159878366 - AluSx SINE Alu -14 298 1 387 0 0 0 chr4 24410726 24410769 -159877893 + (TG)n Simple_repeat Simple_repeat 2 44 0 1966 108 0 0 chr4 24410800 24411086 -159877576 - AluSx SINE Alu 0 311 26 188 331 66 70 chr4 24412027 24412269 -159876393 - L3b LINE CR1 -57 1526 1286 540 97 0 0 chr4 24412463 24412556 -159876106 + (TA)n Simple_repeat Simple_repeat 2 94 0 2018 106 10 30 chr4 24417100 24417403 -159871259 - AluSq SINE Alu -16 297 1 22 0 0 0 chr4 24421075 24421097 -159867565 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr4 24422686 24422713 -159865949 + AT_rich Low_complexity Low_complexity 1 27 0 32 0 0 0 chr4 24423805 24423837 -159864825 + AT_rich Low_complexity Low_complexity 1 32 0 351 332 96 5 chr4 24424586 24424785 -159863877 + Charlie8 DNA MER1_type 48 264 -2153 260 345 109 0 chr4 24425172 24425291 -159863371 + L2 LINE L2 3141 3272 0 188 108 0 27 chr4 24425293 24425330 -159863332 + (TAA)n Simple_repeat Simple_repeat 1 36 0 27 29 0 0 chr4 24426986 24427020 -159861642 + AT_rich Low_complexity Low_complexity 1 34 0 2010 149 0 0 chr4 24429405 24429707 -159858955 + AluSp SINE Alu 1 302 -11 2311 67 0 3 chr4 24429709 24430033 -159858629 + AluY SINE Alu 1 323 0 230 234 0 0 chr4 24430268 24430315 -159858347 + (CA)n Simple_repeat Simple_repeat 2 48 0 209 179 0 36 chr4 24430321 24430377 -159858285 + (TATATG)n Simple_repeat Simple_repeat 1 54 0 21 0 0 0 chr4 24430619 24430640 -159858022 + AT_rich Low_complexity Low_complexity 1 21 0 344 266 35 35 chr4 24433502 24433615 -159855047 + MIR SINE MIR 33 145 -117 386 342 118 57 chr4 24433876 24434398 -159854264 - L2 LINE L2 -456 2858 2284 2250 81 3 10 chr4 24434398 24434696 -159853966 + AluY SINE Alu 1 296 -15 386 342 118 57 chr4 24434696 24434852 -159853810 - L2 LINE L2 -1030 2284 2139 510 268 12 42 chr4 24436527 24436695 -159851967 + L2 LINE L2 3150 3312 -1 216 0 0 0 chr4 24437769 24437793 -159850869 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2120 107 0 7 chr4 24437795 24438103 -159850559 + AluSc SINE Alu 4 309 0 3041 135 85 19 chr4 24438608 24439242 -159849420 - L1PB4 LINE L1 -291 5865 5184 1983 96 22 0 chr4 24439380 24439678 -159848984 - AluY SINE Alu 0 309 6 23 54 0 0 chr4 24440513 24440550 -159848112 + AT_rich Low_complexity Low_complexity 1 37 0 1692 156 25 0 chr4 24441207 24441483 -159847179 - AluSx SINE Alu -28 284 2 187 273 23 0 chr4 24442282 24442326 -159846336 - L2 LINE L2 -8 3305 3261 1346 146 204 0 chr4 24444658 24444938 -159843724 + MER44D DNA MER2_type 1 607 -2 452 322 40 17 chr4 24445066 24445243 -159843419 - MIR SINE MIR -70 192 12 25 0 0 0 chr4 24446658 24446683 -159841979 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr4 24447259 24447288 -159841374 + AT_rich Low_complexity Low_complexity 1 29 0 182 360 45 54 chr4 24447462 24447573 -159841089 + L2 LINE L2 3163 3272 0 341 328 23 0 chr4 24448302 24448479 -159840183 + L1ME4a LINE L1 5742 5922 -199 222 118 0 0 chr4 24448915 24448949 -159839713 + (TG)n Simple_repeat Simple_repeat 2 35 0 281 174 14 0 chr4 24449020 24449089 -159839573 + (TA)n Simple_repeat Simple_repeat 2 71 0 397 264 66 84 chr4 24449212 24449536 -159839126 - LTR33A LTR ERVL -174 347 23 25 65 0 0 chr4 24451128 24451174 -159837488 + AT_rich Low_complexity Low_complexity 1 46 0 2153 81 3 75 chr4 24451308 24451642 -159837020 - AluY SINE Alu -1 310 1 207 0 0 0 chr4 24452280 24452303 -159836359 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 624 299 73 59 chr4 24453423 24453861 -159834801 - L2 LINE L2 -9 3304 2861 279 0 0 0 chr4 24454158 24454189 -159834473 + (TA)n Simple_repeat Simple_repeat 1 31 0 2683 13 0 6 chr4 24454194 24454506 -159834156 - AluY SINE Alu -1 310 1 240 162 73 29 chr4 24454763 24454831 -159833831 + L1ME4a LINE L1 6051 6121 0 21 36 0 0 chr4 24454951 24454979 -159833683 + AT_rich Low_complexity Low_complexity 1 28 0 2160 51 4 11 chr4 24455385 24455659 -159833003 + AluY SINE Alu 35 306 -5 427 258 131 35 chr4 24456245 24456474 -159832188 + MER112 DNA MER1_type 8 258 -2 291 188 135 21 chr4 24458292 24458388 -159830274 + MER103 DNA DNA 13 119 -47 271 112 0 62 chr4 24458397 24458450 -159830212 - L2 LINE L2 -4 3309 3219 614 296 86 0 chr4 24458740 24458983 -159829679 - L2 LINE L2 -389 2925 2662 2017 107 10 3 chr4 24462896 24463187 -159825475 - AluY SINE Alu -18 293 1 23 0 0 0 chr4 24463277 24463300 -159825362 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr4 24464222 24464252 -159824410 + AT_rich Low_complexity Low_complexity 1 30 0 25 51 0 0 chr4 24464780 24464819 -159823843 + AT_rich Low_complexity Low_complexity 1 39 0 196 255 78 0 chr4 24465257 24465308 -159823354 + L2 LINE L2 3209 3263 -9 217 246 73 64 chr4 24465498 24465608 -159823054 + L2 LINE L2 3160 3270 -43 1637 169 3 45 chr4 24465877 24466185 -159822477 - AluJb SINE Alu -17 295 1 31 0 0 0 chr4 24466276 24466307 -159822355 + AT_rich Low_complexity Low_complexity 1 31 0 3672 220 57 7 chr4 24466311 24467232 -159821430 + L1MB7 LINE L1 5213 6179 -5 235 200 0 31 chr4 24467253 24467318 -159821344 + MER106B DNA MER1_type 992 1054 -5 212 167 0 0 chr4 24468461 24468497 -159820165 - L2 LINE L2 -7 3306 3271 227 58 39 39 chr4 24469453 24469505 -159819157 + (CA)n Simple_repeat Simple_repeat 2 53 0 2208 117 0 0 chr4 24470642 24470942 -159817720 + AluSg SINE Alu 3 302 -8 881 255 8 35 chr4 24471168 24471481 -159817181 - MLT1B LTR MaLR -12 374 71 6112 127 56 56 chr4 24471488 24471808 -159816854 - Tigger3b DNA MER2_type -1824 1204 885 188 67 33 0 chr4 24471808 24471838 -159816824 + (TGAG)n Simple_repeat Simple_repeat 1 31 0 6112 127 56 56 chr4 24471838 24471895 -159816767 - Tigger3b DNA MER2_type -2143 885 829 2308 97 0 6 chr4 24471895 24472206 -159816456 + AluSq SINE Alu 1 309 -4 6112 127 56 56 chr4 24472206 24473032 -159815630 - Tigger3b DNA MER2_type -2199 829 1 350 147 132 0 chr4 24473032 24473100 -159815562 - MLT1B LTR MaLR -313 77 1 2192 75 0 4 chr4 24473576 24473880 -159814782 - AluY SINE Alu 0 304 2 24 53 0 0 chr4 24475247 24475285 -159813377 + AT_rich Low_complexity Low_complexity 1 38 0 30 0 0 0 chr4 24475347 24475377 -159813285 + AT_rich Low_complexity Low_complexity 1 30 0 2074 128 0 13 chr4 24475622 24475928 -159812734 + AluSx SINE Alu 1 302 -10 186 43 0 0 chr4 24476113 24476136 -159812526 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 202 192 50 101 chr4 24477613 24477712 -159810950 - MIR SINE MIR -41 221 128 378 0 0 0 chr4 24478433 24478475 -159810187 + (TG)n Simple_repeat Simple_repeat 1 42 0 329 287 0 11 chr4 24478475 24478569 -159810093 + MER103 DNA DNA 63 155 -11 1482 81 0 0 chr4 24479598 24479796 -159808866 + L1PA6 LINE L1 5956 6153 -1 21 0 0 0 chr4 24479812 24479833 -159808829 + AT_rich Low_complexity Low_complexity 1 21 0 234 62 0 0 chr4 24481066 24481098 -159807564 + (TA)n Simple_repeat Simple_repeat 1 32 0 260 179 36 24 chr4 24483295 24483379 -159805283 + (TA)n Simple_repeat Simple_repeat 2 86 0 281 188 29 14 chr4 24483491 24483560 -159805102 - L2 LINE L2 -3 3310 3241 231 246 90 57 chr4 24483785 24483907 -159804755 - MLT1I LTR MaLR -199 210 85 254 297 101 34 chr4 24484222 24484370 -159804292 - L2 LINE L2 -44 3269 3112 259 194 16 0 chr4 24485347 24485409 -159803253 + (TA)n Simple_repeat Simple_repeat 1 63 0 250 301 63 26 chr4 24485690 24485959 -159802703 - L1MC/D LINE L1 -2264 5544 5266 254 259 125 35 chr4 24486100 24486343 -159802319 - L1MC/D LINE L1 -1013 5133 4883 24 53 0 0 chr4 24487980 24488018 -159800644 + AT_rich Low_complexity Low_complexity 1 38 0 424 51 0 0 chr4 24488018 24488077 -159800585 - L1PA6 LINE L1 -2 6152 6094 418 294 14 7 chr4 24488490 24488633 -159800029 + MIR SINE MIR 117 260 -2 390 42 0 0 chr4 24489350 24489398 -159799264 + (TG)n Simple_repeat Simple_repeat 1 48 0 2300 86 0 22 chr4 24490370 24490685 -159797977 - AluSg SINE Alu -2 308 1 188 345 0 0 chr4 24490763 24490821 -159797841 - L2 LINE L2 -10 3303 3246 427 350 94 5 chr4 24490943 24491166 -159797496 + MIR SINE MIR 14 256 -6 772 212 208 26 chr4 24491239 24491730 -159796932 - Charlie2 DNA MER1_type -36 2826 2247 476 290 29 14 chr4 24491797 24492004 -159796658 - Charlie2 DNA MER1_type -2595 267 58 229 306 12 12 chr4 24492092 24492177 -159796485 - MER103 DNA DNA -14 152 68 13129 123 26 7 chr4 24492185 24492346 -159796316 + Tigger1 DNA MER2_type 341 497 -1921 180 0 0 0 chr4 24492346 24492366 -159796296 + (CAA)n Simple_repeat Simple_repeat 2 21 0 13129 123 26 7 chr4 24492366 24494242 -159794420 + Tigger1 DNA MER2_type 497 2418 0 872 201 44 20 chr4 24494388 24494592 -159794070 + MER3 DNA MER1_type 1 209 0 418 317 101 22 chr4 24495192 24495419 -159793243 - MIR SINE MIR 0 262 18 23 68 0 0 chr4 24495420 24495464 -159793198 + AT_rich Low_complexity Low_complexity 1 44 0 522 272 22 22 chr4 24496430 24496610 -159792052 - L2 LINE L2 0 3313 3134 199 316 68 30 chr4 24498000 24498133 -159790529 + L2 LINE L2 2239 2376 -938 365 333 68 23 chr4 24498151 24498283 -159790379 + L2 LINE L2 3133 3270 -2 23 0 0 0 chr4 24505747 24505770 -159782892 + AT_rich Low_complexity Low_complexity 1 23 0 375 23 0 0 chr4 24506328 24506372 -159782290 + (TA)n Simple_repeat Simple_repeat 2 45 0 24 0 0 0 chr4 24507998 24508022 -159780640 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr4 24509144 24509166 -159779496 + AT_rich Low_complexity Low_complexity 1 22 0 2282 92 0 0 chr4 24509547 24509862 -159778800 - AluY SINE Alu 0 315 1 2025 144 3 0 chr4 24510113 24510419 -159778243 + AluSx SINE Alu 1 307 -5 23 54 0 0 chr4 24514086 24514123 -159774539 + AT_rich Low_complexity Low_complexity 1 37 0 2054 131 3 20 chr4 24514625 24514922 -159773740 + AluSg SINE Alu 5 296 -14 32 26 0 0 chr4 24515025 24515064 -159773598 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr4 24515280 24515302 -159773360 + AT_rich Low_complexity Low_complexity 1 22 0 2142 134 0 13 chr4 24515474 24515781 -159772881 + AluSx SINE Alu 1 303 -9 201 159 32 48 chr4 24515915 24515978 -159772684 + (TATAA)n Simple_repeat Simple_repeat 1 62 0 463 292 62 11 chr4 24516186 24516364 -159772298 + MIR SINE MIR 2 188 -74 2122 107 0 3 chr4 24516939 24517230 -159771432 - AluSg SINE Alu -20 290 1 264 258 15 0 chr4 24518418 24518484 -159770178 + L2 LINE L2 3247 3313 0 996 144 0 0 chr4 24519199 24519372 -159769290 + (TA)n Simple_repeat Simple_repeat 2 174 0 1157 61 14 7 chr4 24519372 24519520 -159769142 - AluY SINE Alu -16 295 147 374 95 15 151 chr4 24519620 24519771 -159768891 + L1PA12 LINE L1 6049 6163 0 2343 93 0 3 chr4 24519931 24520231 -159768431 - AluSq SINE Alu -14 299 1 246 105 0 0 chr4 24520465 24520503 -159768159 + (ATTG)n Simple_repeat Simple_repeat 2 39 0 2257 96 3 3 chr4 24520554 24520855 -159767807 + AluSp SINE Alu 1 301 -12 245 320 62 56 chr4 24521412 24521590 -159767072 + MER5A DNA MER1_type 10 188 -1 248 279 13 25 chr4 24521592 24521671 -159766991 - MIR3 SINE MIR -49 159 82 450 35 96 9 chr4 24522067 24522182 -159766480 + (TA)n Simple_repeat Simple_repeat 2 126 0 1605 131 123 0 chr4 24522182 24522434 -159766228 - AluSx SINE Alu -27 285 3 240 35 0 0 chr4 24522509 24522538 -159766124 + (TG)n Simple_repeat Simple_repeat 1 29 0 201 278 0 41 chr4 24522981 24523078 -159765584 + A-rich Low_complexity Low_complexity 2 94 0 1471 175 64 59 chr4 24523142 24523530 -159765132 - MLT1B LTR MaLR 0 390 1 227 315 161 35 chr4 24523566 24523833 -159764829 + L2 LINE L2 2376 2608 -706 2084 125 13 16 chr4 24523833 24524146 -159764516 - AluSq SINE Alu -1 312 1 227 315 161 35 chr4 24524146 24524338 -159764324 + L2 LINE L2 2608 2893 -421 4112 173 7 9 chr4 24524504 24525237 -159763425 - MER44D DNA MER2_type -1 604 2 207 0 0 0 chr4 24525312 24525335 -159763327 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1636 99 5 5 chr4 24525638 24525895 -159762767 + AluSc SINE Alu 67 309 0 230 325 24 0 chr4 24526180 24526263 -159762399 - MIR3 SINE MIR -21 187 103 401 243 0 10 chr4 24526454 24526557 -159762105 + MER94 DNA DNA 2 103 -31 2157 105 0 14 chr4 24526836 24527131 -159761531 + AluSx SINE Alu 22 312 0 257 307 20 30 chr4 24528607 24528708 -159759954 + MIR SINE MIR 158 257 -5 2128 94 35 0 chr4 24529074 24529360 -159759302 - AluSq SINE Alu -17 296 1 203 405 76 8 chr4 24529722 24529853 -159758809 + L2 LINE L2 3133 3272 0 667 213 114 5 chr4 24531115 24531317 -159757345 + L1ME3A LINE L1 5880 6103 -67 2575 49 3 0 chr4 24531943 24532247 -159756415 - AluY SINE Alu -6 305 1 227 321 0 12 chr4 24532516 24532600 -159756062 - MER94 DNA DNA 0 134 52 466 255 108 13 chr4 24532802 24532959 -159755703 - MIR3 SINE MIR -21 187 16 213 200 20 20 chr4 24533099 24533149 -159755513 - L2 LINE L2 0 3313 3264 330 331 65 6 chr4 24535220 24535389 -159753273 - MIR SINE MIR -2 260 82 2372 141 23 9 chr4 24535390 24535830 -159752832 + L1MA9 LINE L1 5864 6309 -3 234 136 34 17 chr4 24535942 24536001 -159752661 + (CATA)n Simple_repeat Simple_repeat 1 60 0 310 247 21 0 chr4 24536008 24536101 -159752561 + L1MC4 LINE L1 6614 6708 -1334 271 253 0 22 chr4 24536145 24536236 -159752426 + L1MC4 LINE L1 6614 6702 -1340 201 74 0 0 chr4 24536238 24536265 -159752397 + (TATG)n Simple_repeat Simple_repeat 2 28 0 229 211 18 83 chr4 24536265 24536374 -159752288 - L1MC4 LINE L1 -1339 6703 6602 288 170 0 0 chr4 24536404 24536457 -159752205 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 664 296 32 9 chr4 24536722 24536942 -159751720 + MIR SINE MIR 38 262 0 23 68 0 0 chr4 24537181 24537225 -159751437 + AT_rich Low_complexity Low_complexity 1 44 0 1647 81 4 28 chr4 24537785 24538033 -159750629 + L1MA2 LINE L1 6063 6304 0 628 191 17 40 chr4 24538051 24538240 -159750422 + L1MA7 LINE L1 5936 6122 -169 2316 115 0 6 chr4 24538993 24539307 -159749355 - AluSx SINE Alu 0 312 1 183 345 71 36 chr4 24539349 24539433 -159749229 + MIR SINE MIR 31 117 -91 865 278 115 47 chr4 24540460 24540946 -159747716 - LTR33 LTR ERVL -1 520 2 318 239 228 0 chr4 24540966 24541058 -159747604 - L2 LINE L2 -3 3310 3198 21 57 0 0 chr4 24541431 24541466 -159747196 + AT_rich Low_complexity Low_complexity 1 35 0 32 0 0 0 chr4 24542082 24542114 -159746548 + AT_rich Low_complexity Low_complexity 1 32 0 1952 96 4 8 chr4 24542354 24542615 -159746047 - AluY SINE Alu -3 308 49 29 78 0 0 chr4 24542833 24542897 -159745765 + AT_rich Low_complexity Low_complexity 1 64 0 212 175 35 0 chr4 24542897 24542954 -159745708 + GA-rich Low_complexity Low_complexity 2 60 0 570 325 55 20 chr4 24543151 24543351 -159745311 + MIR SINE MIR 32 238 -24 287 286 19 29 chr4 24543354 24543459 -159745203 + L2 LINE L2 2315 2418 -896 302 330 21 0 chr4 24545064 24545161 -159743501 + MIR3 SINE MIR 61 159 -49 288 53 0 0 chr4 24545961 24545999 -159742663 + (GGGGA)n Simple_repeat Simple_repeat 5 42 0 218 299 26 0 chr4 24546399 24546476 -159742186 + GA-rich Low_complexity Low_complexity 2 80 0 696 216 88 0 chr4 24548844 24549015 -159739647 - MER5A DNA MER1_type -2 187 2 589 235 5 70 chr4 24549038 24549225 -159739437 - MER63A DNA MER1_type -35 175 1 1934 111 99 41 chr4 24549351 24549695 -159738967 - THE1B LTR MaLR 0 364 1 490 236 96 51 chr4 24550269 24550447 -159738215 + MIR SINE MIR 74 259 -3 2246 93 7 0 chr4 24550678 24550968 -159737694 - AluY SINE Alu -19 292 1 2232 105 0 0 chr4 24551160 24551455 -159737207 - AluSg SINE Alu -15 295 1 227 0 91 0 chr4 24552018 24552051 -159736611 + T-rich Low_complexity Low_complexity 5 40 0 2011 109 7 11 chr4 24552086 24552370 -159736292 - AluSq SINE Alu -30 283 1 1695 178 50 4 chr4 24552534 24552815 -159735847 + AluJb SINE Alu 1 294 -18 408 238 354 0 chr4 24553280 24553461 -159735201 + MIR SINE MIR 3 247 -15 495 300 126 9 chr4 24554453 24554676 -159733986 - MIR SINE MIR -2 260 12 196 326 76 22 chr4 24556621 24556713 -159731949 + MIR3 SINE MIR 2 98 -110 207 114 0 0 chr4 24557013 24557048 -159731614 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 222 208 0 0 chr4 24557372 24557420 -159731242 + (AATTG)n Simple_repeat Simple_repeat 5 52 0 196 279 0 0 chr4 24557687 24557730 -159730932 - L2 LINE L2 -8 3305 3263 397 318 98 19 chr4 24558015 24558229 -159730433 - MIR SINE MIR -3 259 29 905 213 0 0 chr4 24558418 24558587 -159730075 + AluJb SINE Alu 137 305 -7 2407 76 0 3 chr4 24558959 24559260 -159729402 + AluY SINE Alu 1 300 -11 3384 105 4 8 chr4 24559266 24559781 -159728881 + L1PA13 LINE L1 5432 5944 -219 186 43 0 0 chr4 24560795 24560818 -159727844 + (CA)n Simple_repeat Simple_repeat 1 23 0 285 277 43 0 chr4 24561034 24561128 -159727534 - MIR SINE MIR -4 258 161 503 310 35 100 chr4 24562243 24562694 -159725968 - L2 LINE L2 -17 3296 2875 254 75 528 0 chr4 24564317 24564370 -159724292 - MIR SINE MIR -92 116 36 226 209 0 0 chr4 24565494 24565537 -159723125 + (CA)n Simple_repeat Simple_repeat 2 44 0 1045 276 59 28 chr4 24565929 24566284 -159722378 + LTR16A LTR ERVL 38 403 -47 1764 132 38 25 chr4 24566486 24566827 -159721835 - MER4A LTR ERV1 0 664 261 632 131 0 10 chr4 24566827 24566926 -159721736 - MER4A LTR ERV1 -566 98 1 7283 107 46 12 chr4 24566938 24568061 -159720601 - MER4A-int LTR ERV1 -5 6593 5432 582 160 134 0 chr4 24568061 24568180 -159720482 + LTR8 LTR ERV1 123 257 -434 4598 67 59 9 chr4 24568180 24568877 -159719785 - MER4-int LTR ERV1 -4103 2495 1764 489 34 0 0 chr4 24568893 24568952 -159719710 + (CA)n Simple_repeat Simple_repeat 2 60 0 3281 124 120 25 chr4 24568957 24569523 -159719139 - MER4-int LTR ERV1 -5608 1150 531 2988 91 95 0 chr4 24569524 24569933 -159718729 - LTR7 LTR ERV1 -2 448 1 2467 90 50 13 chr4 24569933 24570311 -159718351 - HERVH LTR ERV1 0 7713 7322 1386 127 38 0 chr4 24570309 24570521 -159718141 - HERVH LTR ERV1 -1894 5819 5600 * 8268 130 6 7 chr4 24570522 24572245 -159716417 - HERVH LTR ERV1 -2287 4242 3492 824 162 20 0 chr4 24572235 24572383 -159716279 - HERVH LTR ERV1 -4423 3290 3140 * 20147 102 21 7 chr4 24572377 24575323 -159713339 - HERVH LTR ERV1 -4726 2987 1 3081 81 93 0 chr4 24575325 24575735 -159712927 - LTR7 LTR ERV1 -2 448 1 2357 127 12 6 chr4 24575735 24576081 -159712581 - MER4A-int LTR ERV1 -6222 536 189 951 258 119 51 chr4 24576080 24576322 -159712340 - MER4A-int LTR ERV1 -4107 2224 1949 * 2233 90 10 0 chr4 24576322 24576611 -159712051 + AluY SINE Alu 1 292 -19 951 258 119 51 chr4 24576611 24576721 -159711941 - MER4A-int LTR ERV1 -4382 1949 1848 2548 118 86 31 chr4 24576750 24577373 -159711289 - MER4A-int LTR ERV1 -5745 853 3 1666 129 16 22 chr4 24577378 24577688 -159710974 - MER4A LTR ERV1 0 664 261 672 121 0 10 chr4 24577688 24577787 -159710875 - MER4A LTR ERV1 -566 98 1 868 235 20 15 chr4 24578117 24578300 -159710362 - MLT1A2 LTR MaLR 0 374 191 713 176 69 8 chr4 24578300 24578431 -159710231 + MLT1A1 LTR MaLR 1 139 -226 787 148 0 16 chr4 24578431 24578559 -159710103 - FLAM_C SINE Alu 0 143 18 732 234 60 5 chr4 24578562 24578746 -159709916 + MLT1A1 LTR MaLR 171 364 -1 313 227 0 13 chr4 24578813 24578888 -159709774 - MLT1A2 LTR MaLR -213 161 88 1411 120 0 0 chr4 24578893 24579102 -159709560 + L1P3 LINE L1 949 1157 -5304 805 186 18 36 chr4 24579102 24579269 -159709393 - MER58 DNA MER1_type -176 165 2 23 0 0 0 chr4 24579459 24579482 -159709180 + AT_rich Low_complexity Low_complexity 1 23 0 198 341 80 0 chr4 24579522 24579610 -159709052 + L2 LINE L2 3178 3272 0 6218 134 12 7 chr4 24580314 24581816 -159706846 - L1PB2 LINE L1 -2 6149 4639 341 339 8 0 chr4 24581837 24581967 -159706695 + L1MEd LINE L1 42 172 -5947 * 592 206 206 0 chr4 24581965 24582101 -159706561 + L1MEd LINE L1 466 629 -5490 632 234 74 69 chr4 24582193 24582427 -159706235 + L1MEd LINE L1 796 1034 -5085 679 231 0 30 chr4 24582427 24582561 -159706101 + FLAM_C SINE Alu 1 130 -3 632 234 74 69 chr4 24582561 24582745 -159705917 + L1MEd LINE L1 1034 1216 -4903 307 97 32 16 chr4 24582753 24582815 -159705847 + L1PB1 LINE L1 5957 6019 -132 215 335 60 37 chr4 24582857 24583072 -159705590 + MIR SINE MIR 4 223 -39 341 236 0 0 chr4 24583233 24583305 -159705357 - L2 LINE L2 0 3272 3201 189 316 0 0 chr4 24583333 24583390 -159705272 + MIR SINE MIR 169 225 -37 202 284 60 15 chr4 24583533 24583600 -159705062 + MIR SINE MIR 15 84 -178 693 294 60 7 chr4 24583607 24583889 -159704773 - LTR16C LTR ERVL -4 487 191 207 180 98 16 chr4 24584031 24584092 -159704570 + MIR SINE MIR 99 164 -98 590 238 65 92 chr4 24584179 24584582 -159704080 + MLT1J2 LTR MaLR 59 450 0 278 222 0 49 chr4 24584602 24584683 -159703979 + MIR SINE MIR 186 262 0 1016 254 152 6 chr4 24585890 24586252 -159702410 + MER31B LTR ERV1 1 415 -51 2835 141 19 23 chr4 24586268 24586744 -159701918 + MER31A LTR ERV1 12 485 0 287 266 60 47 chr4 24586812 24586907 -159701755 + MIR SINE MIR 24 121 -87 1243 124 5 5 chr4 24586907 24587093 -159701569 - MER83C-int LTR ERV1 -982 3898 3713 304 106 0 0 chr4 24587103 24587150 -159701512 + MER83B-int LTR ERV1 3666 3712 -1168 7164 192 46 21 chr4 24587151 24588701 -159699961 - MER83C-int LTR ERV1 -1176 3704 48 2027 139 78 6 chr4 24588760 24589092 -159699570 - MER83C LTR ERV1 0 373 18 1791 211 15 0 chr4 24589106 24589433 -159699229 + MSTA LTR MaLR 97 428 0 2726 123 5 3 chr4 24589981 24590355 -159698307 - THE1C LTR MaLR 0 375 1 329 152 0 152 chr4 24590631 24590723 -159697939 + MLT1E2 LTR MaLR 549 626 0 1808 187 12 0 chr4 24590841 24591167 -159697495 - MLT1B LTR MaLR -60 330 1 260 335 36 24 chr4 24592618 24592785 -159695877 - MIR SINE MIR -12 250 82 247 332 134 11 chr4 24593075 24593262 -159695400 - MIR SINE MIR 0 262 53 524 308 111 21 chr4 24594221 24594455 -159694207 - MIR SINE MIR 0 262 8 2596 160 22 2 chr4 24595151 24595608 -159693054 - L1MB3 LINE L1 0 6183 5718 348 256 72 8 chr4 24596365 24596490 -159692172 - MIR SINE MIR -6 256 124 586 208 32 0 chr4 24596758 24596883 -159691779 + MLT1J2 LTR MaLR 4 132 -318 3682 135 14 52 chr4 24597029 24597137 -159691525 - MER41B LTR ERV1 0 635 524 10416 24 4 57 chr4 24597137 24599123 -159689539 + L1PA3 LINE L1 4222 6155 0 3682 135 14 52 chr4 24599123 24599674 -159688988 - MER41B LTR ERV1 -111 524 1 22 0 0 0 chr4 24599764 24599786 -159688876 + AT_rich Low_complexity Low_complexity 1 22 0 511 216 39 0 chr4 24601018 24601120 -159687542 + MER3 DNA MER1_type 1 106 -103 14294 176 23 17 chr4 24601179 24602894 -159685768 - L1PB2 LINE L1 0 6867 5163 200 59 29 0 chr4 24602894 24602928 -159685734 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 14294 176 23 17 chr4 24602928 24603010 -159685652 - L1PB2 LINE L1 -1704 5163 5083 298 91 68 0 chr4 24603010 24603054 -159685608 - U3 snRNA snRNA -142 75 29 14294 176 23 17 chr4 24603054 24603336 -159685326 - L1PB2 LINE L1 -1784 5083 4804 2083 154 55 25 chr4 24603336 24603700 -159684962 - THE1C LTR MaLR 0 375 1 14294 176 23 17 chr4 24603700 24605641 -159683021 - L1PB2 LINE L1 -2063 4804 2783 2032 169 130 16 chr4 24605643 24606027 -159682635 + MSTA LTR MaLR 1 428 0 3212 139 7 138 chr4 24606028 24606795 -159681867 + MSTA-int LTR MaLR 3 668 -912 7952 170 54 2 chr4 24606796 24608225 -159680437 - L1PB2 LINE L1 -4847 2016 514 270 256 0 12 chr4 24608236 24608318 -159680344 + LTR37B LTR ERV1 388 468 0 2696 123 5 5 chr4 24608550 24608925 -159679737 + THE1C LTR MaLR 1 375 0 1894 81 0 4 chr4 24609678 24609924 -159678738 - L1P LINE L1 -5901 245 1 1612 86 17 10 chr4 24609891 24610228 -159678434 - L1P2 LINE L1 -628 5526 5187 * 2196 147 2 66 chr4 24610228 24610772 -159677890 + L1P LINE L1 3158 3666 -2480 17802 26 1 1 chr4 24610872 24613612 -159675050 - L1PA3 LINE L1 -109 6046 3305 462 282 40 0 chr4 24613753 24613902 -159674760 - MER63 DNA MER1_type -1 1060 906 478 80 13 27 chr4 24613902 24613977 -159674685 + MLT1B LTR MaLR 317 390 0 245 250 0 0 chr4 24614863 24614911 -159673751 + polypyrimidine Low_complexity Low_complexity 1 48 0 3131 65 15 5 chr4 24615409 24615809 -159672853 + MLT2A1 LTR ERVL 1 404 -40 332 146 0 0 chr4 24615863 24615918 -159672744 + MLT2A1 LTR ERVL 390 444 0 1858 128 88 0 chr4 24616461 24616734 -159671928 - AluSx SINE Alu -15 297 1 1918 185 38 9 chr4 24616783 24617124 -159671538 - MLT1A1 LTR MaLR 0 365 15 1165 224 101 34 chr4 24617160 24617598 -159671064 + MLT1C LTR MaLR 1 467 0 679 307 38 4 chr4 24617612 24617850 -159670812 + MIR SINE MIR 16 261 -1 24 0 0 0 chr4 24617926 24617950 -159670712 + AT_rich Low_complexity Low_complexity 1 24 0 937 176 33 22 chr4 24617968 24618150 -159670512 - MLT1A2 LTR MaLR -2 372 189 366 169 40 8 chr4 24618172 24618296 -159670366 + GA-rich Low_complexity Low_complexity 1 128 0 875 154 26 13 chr4 24618313 24618469 -159670193 - MLT1A2 LTR MaLR -216 158 1 1944 190 50 52 chr4 24619678 24620177 -159668485 + MLT1D LTR MaLR 1 498 -7 1161 249 30 14 chr4 24620236 24620533 -159668129 - MLT1A1 LTR MaLR -8 357 56 2398 110 0 0 chr4 24621051 24621360 -159667302 + AluSx SINE Alu 1 309 -3 798 191 45 6 chr4 24622635 24622813 -159665849 + MER53 DNA DNA 2 186 -3 595 235 143 31 chr4 24623840 24624036 -159664626 - MER20 DNA MER1_type 0 219 2 2339 89 3 0 chr4 24624199 24624492 -159664170 + AluSc SINE Alu 1 294 -15 319 339 62 22 chr4 24624534 24624758 -159663904 - L2 LINE L2 0 3313 3081 628 287 126 16 chr4 24624759 24625125 -159663537 - LTR50 LTR ERVL -1 794 389 542 223 81 0 chr4 24625253 24625401 -159663261 - LTR50 LTR ERVL -628 167 8 336 48 0 0 chr4 24625661 24625703 -159662959 + (TG)n Simple_repeat Simple_repeat 2 43 0 1617 181 110 14 chr4 24628064 24628087 -159660575 - MLT2D LTR ERVL -14 400 381 357 62 0 0 chr4 24628087 24628135 -159660527 + (TG)n Simple_repeat Simple_repeat 1 48 0 1617 181 110 14 chr4 24628135 24628476 -159660186 - MLT2D LTR ERVL -33 381 1 6714 210 13 5 chr4 24628576 24629811 -159658851 - ERVL LTR ERVL -2517 3247 2003 494 241 41 87 chr4 24630051 24630331 -159658331 + MLT1H1 LTR MaLR 202 547 -8 2457 73 0 10 chr4 24631204 24631546 -159657116 - AluY SINE Alu 0 311 1 1014 230 53 32 chr4 24631708 24631872 -159656790 - MLT1A2 LTR MaLR -24 350 176 306 50 0 0 chr4 24631872 24631912 -159656750 + (GA)n Simple_repeat Simple_repeat 2 41 0 1014 230 53 32 chr4 24631912 24632030 -159656632 - MLT1A2 LTR MaLR -198 176 62 545 111 63 71 chr4 24632030 24632156 -159656506 + L1MB2 LINE L1 6047 6171 0 264 231 120 60 chr4 24632284 24632401 -159656261 - MLT1J LTR MaLR -75 436 313 274 214 86 14 chr4 24632647 24632717 -159655945 - MLT1L LTR MaLR -536 79 5 2040 121 0 24 chr4 24633482 24633779 -159654883 - AluSc SINE Alu -19 290 1 368 267 185 0 chr4 24633790 24633936 -159654726 - L1ME3A LINE L1 -5 6165 5993 1108 254 143 35 chr4 24634061 24634517 -159654145 + MLT1D LTR MaLR 1 505 0 1798 147 0 0 chr4 24635350 24635623 -159653039 + AluY SINE Alu 14 286 -25 2259 184 26 22 chr4 24635834 24636297 -159652365 - MLT1C LTR MaLR 0 467 3 371 279 0 0 chr4 24636537 24636623 -159652039 - MER5A DNA MER1_type -83 106 21 23 0 0 0 chr4 24636841 24636864 -159651798 + AT_rich Low_complexity Low_complexity 1 23 0 1092 174 10 0 chr4 24637125 24637321 -159651341 + L1MA9 LINE L1 5985 6182 -130 2046 164 14 5 chr4 24637436 24637807 -159650855 - L1P LINE L1 -3156 2990 2617 4185 137 25 72 chr4 24638603 24639500 -159649162 + L1P LINE L1 4121 4974 -1172 684 268 28 38 chr4 24640761 24641052 -159647610 - AluJo SINE Alu -11 301 14 407 338 50 10 chr4 24642018 24642219 -159646443 + MIR SINE MIR 35 243 -19 446 268 147 32 chr4 24643617 24643774 -159644888 + MER5A DNA MER1_type 15 189 0 352 225 0 0 chr4 24644711 24644791 -159643871 - MLT1A2 LTR MaLR -310 80 1 2115 183 32 9 chr4 24646270 24646728 -159641934 - L1MB3 LINE L1 -65 6124 5662 2042 146 17 0 chr4 24647645 24648002 -159640660 + L1PBa LINE L1 1654 2016 -4847 1311 184 9 0 chr4 24648003 24648231 -159640431 - MSTA-int LTR MaLR -912 668 439 293 192 68 41 chr4 24648232 24648305 -159640357 - MSTA LTR MaLR -178 250 176 313 217 103 60 chr4 24648350 24648534 -159640128 - MSTA-int LTR MaLR -1218 433 242 1750 217 15 0 chr4 24649363 24649690 -159638972 - MSTA LTR MaLR 0 428 97 464 267 181 8 chr4 24649696 24649962 -159638700 + MER83B LTR ERV1 5 316 -62 8295 129 8 15 chr4 24650663 24651962 -159636700 - THE1A-int LTR MaLR -291 1289 1 680 212 108 4 chr4 24651965 24652234 -159636428 - THE1A LTR MaLR -3 352 56 219 335 36 24 chr4 24653546 24653713 -159634949 - MIR SINE MIR -12 250 82 22 0 0 0 chr4 24654001 24654023 -159634639 + AT_rich Low_complexity Low_complexity 1 22 0 712 227 11 61 chr4 24654834 24655086 -159633576 - MER8 DNA MER2_type 0 239 7 1357 200 37 14 chr4 24656166 24656461 -159632201 + L1M4 LINE L1 4637 4938 -1208 186 313 31 0 chr4 24658095 24658159 -159630503 - MIR SINE MIR -129 133 68 1783 140 35 7 chr4 24658389 24658674 -159629988 + AluSq SINE Alu 1 293 -20 1091 214 75 14 chr4 24660165 24660446 -159628216 - MLT1E3 LTR MaLR 0 624 327 518 250 61 14 chr4 24660510 24660656 -159628006 - MLT1E3 LTR MaLR -393 261 62 5137 127 35 14 chr4 24661402 24662363 -159626299 - L1P LINE L1 -4109 2037 1056 2285 90 3 0 chr4 24663352 24663642 -159625020 + AluSc SINE Alu 1 291 -18 397 327 66 26 chr4 24663687 24663913 -159624749 - L2 LINE L2 0 3313 3079 508 283 89 26 chr4 24664009 24664278 -159624384 - LTR50 LTR ERVL -121 674 389 245 250 0 0 chr4 24665439 24665487 -159623175 + polypyrimidine Low_complexity Low_complexity 1 48 0 2359 92 31 15 chr4 24665985 24666377 -159622285 + MLT2A1 LTR ERVL 1 398 -46 533 308 111 21 chr4 24667850 24668084 -159620578 + MIR SINE MIR 8 262 0 1959 204 3 3 chr4 24669375 24669738 -159618924 - MLT1A1 LTR MaLR -2 363 1 721 284 28 14 chr4 24669789 24670000 -159618662 - LTR33 LTR ERVL -307 214 1 390 311 15 0 chr4 24670197 24670329 -159618333 + L2 LINE L2 2219 2352 -962 224 256 151 0 chr4 24670597 24670683 -159617979 - MIR SINE MIR -5 257 159 2136 103 0 0 chr4 24671649 24671922 -159616740 - AluSc SINE Alu -36 273 1 342 93 0 0 chr4 24671923 24671977 -159616685 + L1MA9 LINE L1 6254 6307 -5 1561 184 0 9 chr4 24672923 24673249 -159615413 + MER33 DNA MER1_type 1 323 -1 1959 204 3 3 chr4 24673810 24674173 -159614489 - MLT1A1 LTR MaLR -2 363 1 721 284 28 14 chr4 24674224 24674435 -159614227 - LTR33 LTR ERVL -307 214 1 390 311 15 0 chr4 24674632 24674764 -159613898 + L2 LINE L2 2219 2352 -962 280 310 271 10 chr4 24675032 24675235 -159613427 - MIR SINE MIR -5 257 2 192 321 0 0 chr4 24675453 24675506 -159613156 - L2 LINE L2 -43 3229 3177 287 342 114 0 chr4 24675616 24675730 -159612932 - L2 LINE L2 -1 3312 3186 22 35 0 0 chr4 24676023 24676052 -159612610 + AT_rich Low_complexity Low_complexity 1 29 0 248 176 81 0 chr4 24677547 24677621 -159611041 + Charlie7 DNA MER1_type 278 357 -2255 262 143 0 0 chr4 24677885 24677927 -159610735 + MER2 DNA MER2_type 3 44 -301 297 211 0 18 chr4 24677995 24678052 -159610610 + MER2 DNA MER2_type 290 345 0 1141 254 86 20 chr4 24678052 24678610 -159610052 + Charlie7 DNA MER1_type 1729 2323 -289 343 278 42 21 chr4 24678673 24678817 -159609845 - MIR SINE MIR 0 262 116 387 301 26 13 chr4 24679269 24679425 -159609237 + L3 LINE CR1 1165 1322 -255 381 22 0 0 chr4 24679660 24679706 -159608956 + (TG)n Simple_repeat Simple_repeat 2 47 0 398 335 59 12 chr4 24679856 24680026 -159608636 - MIR SINE MIR -71 191 14 247 366 122 0 chr4 24680033 24680197 -159608465 - L2 LINE L2 -815 2499 2316 250 267 99 37 chr4 24682011 24682172 -159606490 + L1ME3A LINE L1 5960 6130 -40 22 56 0 0 chr4 24682172 24682208 -159606454 + AT_rich Low_complexity Low_complexity 1 36 0 2341 75 7 0 chr4 24682763 24683055 -159605607 - AluY SINE Alu -17 294 1 454 281 7 7 chr4 24684894 24685047 -159603615 + L1MA10 LINE L1 6169 6321 -13 2114 68 4 46 chr4 24685048 24685329 -159603333 + AluSp SINE Alu 23 291 -22 215 305 113 35 chr4 24685353 24685494 -159603168 + MIR SINE MIR 57 208 -54 923 135 0 0 chr4 24687087 24687220 -159601442 + FLAM_C SINE Alu 1 133 0 249 303 8 34 chr4 24688286 24688405 -159600257 + CT-rich Low_complexity Low_complexity 5 120 0 197 208 0 19 chr4 24688413 24688466 -159600196 + T-rich Low_complexity Low_complexity 3 54 0 892 190 58 23 chr4 24688497 24688793 -159599869 - MER2 DNA MER2_type 0 345 6 202 226 16 32 chr4 24689512 24689574 -159599088 + T-rich Low_complexity Low_complexity 1 61 0 8284 34 0 2 chr4 24689823 24690879 -159597783 - L1P LINE L1 -3140 3006 1953 6151 38 1 0 chr4 24690879 24691615 -159597047 + L1PA3 LINE L1 5416 6152 -3 1785 161 14 3 chr4 24691769 24692055 -159596607 + AluSx SINE Alu 3 291 -21 1004 216 9 19 chr4 24692305 24692518 -159596144 - MER77 LTR ERV1 -7 598 388 39810 58 6 1 chr4 24692530 24698655 -159590007 - L1PA5 LINE L1 0 6154 1 1374 212 47 22 chr4 24698664 24698985 -159589677 - MER77 LTR ERV1 -210 395 67 266 318 45 11 chr4 24699497 24699585 -159589077 - L2 LINE L2 -24 3248 3158 189 139 0 0 chr4 24699588 24699631 -159589031 + (TTTTTG)n Simple_repeat Simple_repeat 1 43 0 481 252 46 23 chr4 24700344 24700475 -159588187 - MER5A DNA MER1_type -30 159 26 270 116 0 0 chr4 24701555 24701598 -159587064 + (CA)n Simple_repeat Simple_repeat 2 44 0 479 310 71 25 chr4 24703073 24703298 -159585364 - MIR SINE MIR -19 243 8 1558 193 11 11 chr4 24704014 24704289 -159584373 - AluJo SINE Alu -37 275 1 28 61 0 0 chr4 24705665 24705714 -159582948 + AT_rich Low_complexity Low_complexity 1 49 0 1439 188 50 24 chr4 24707278 24707576 -159581086 - AluJo SINE Alu -6 306 1 387 278 122 65 chr4 24708468 24708713 -159579949 + MIR SINE MIR 2 260 -2 769 224 88 24 chr4 24711408 24711613 -159577049 + MIR SINE MIR 11 228 -34 2314 98 0 22 chr4 24711722 24712038 -159576624 - AluSg SINE Alu -1 309 1 311 281 22 7 chr4 24712553 24712692 -159575970 - L1 LINE L1 -1723 4423 4283 1231 200 37 14 chr4 24713010 24713305 -159575357 + L1M4 LINE L1 4637 4938 -1208 334 311 59 15 chr4 24713913 24714048 -159574614 - MER91B DNA MER1_type -32 158 18 1517 212 14 10 chr4 24714053 24714350 -159574312 + AluJo SINE Alu 1 298 -14 680 247 45 0 chr4 24714557 24714735 -159573927 - MER5A DNA MER1_type -3 186 1 36730 72 16 17 chr4 24714830 24720982 -159567680 + L1PA5 LINE L1 11 6152 -2 4567 72 15 0 chr4 24722136 24722736 -159565926 + L1PA7 LINE L1 5546 6154 0 427 339 39 17 chr4 24722761 24722994 -159565668 - MIR SINE MIR -2 260 23 413 97 14 0 chr4 24724764 24724836 -159563826 + (TA)n Simple_repeat Simple_repeat 1 73 0 213 39 0 0 chr4 24725073 24725099 -159563563 + (TG)n Simple_repeat Simple_repeat 2 27 0 * 230 54 0 27 chr4 24725098 24725135 -159563527 + (TA)n Simple_repeat Simple_repeat 1 36 0 1256 98 12 0 chr4 24725213 24725376 -159563286 + AluSg/x SINE Alu 135 299 -13 329 269 76 8 chr4 24725477 24725596 -159563066 + L2 LINE L2 3136 3262 -10 345 277 27 68 chr4 24726362 24726510 -159562152 - MIR3 SINE MIR -57 151 10 811 266 18 65 chr4 24728086 24728259 -159560403 + MIR SINE MIR 1 158 -104 2313 106 0 0 chr4 24728259 24728562 -159560100 - AluSq SINE Alu -10 303 1 811 266 18 65 chr4 24728562 24728663 -159559999 + MIR SINE MIR 158 262 0 192 152 0 0 chr4 24729071 24729104 -159559558 + L2 LINE L2 3279 3311 -2 229 372 68 14 chr4 24729322 24729470 -159559192 - MIR3 SINE MIR -11 197 42 340 361 45 8 chr4 24729478 24729611 -159559051 - MIR3 SINE MIR -3 205 68 21 0 0 0 chr4 24729992 24730013 -159558649 + AT_rich Low_complexity Low_complexity 1 21 0 189 268 0 0 chr4 24730042 24730083 -159558579 + L2 LINE L2 3222 3262 -10 309 51 0 0 chr4 24730103 24730142 -159558520 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 1571 251 57 24 chr4 24731659 24732357 -159556305 - L2 LINE L2 0 3313 2588 693 332 138 55 chr4 24732605 24733741 -159554921 + L2 LINE L2 1609 2839 -475 190 211 28 127 chr4 24733922 24733993 -159554669 + MIR SINE MIR 88 151 -111 420 304 20 38 chr4 24734522 24734728 -159553934 + MIR3 SINE MIR 15 212 -50 782 217 4 83 chr4 24736078 24736331 -159552331 + MER8 DNA MER2_type 7 239 0 213 243 29 29 chr4 24737020 24737070 -159551592 + (CAAA)n Simple_repeat Simple_repeat 2 54 -17 1075 197 75 105 chr4 24737070 24737548 -159551114 + MLT2C2 LTR ERVL 1 464 0 213 243 29 29 chr4 24737548 24737567 -159551095 + (CAAA)n Simple_repeat Simple_repeat 53 71 0 287 309 65 14 chr4 24738108 24738229 -159550433 - L2 LINE L2 -10 3303 3173 2158 163 14 3 chr4 24738229 24738590 -159550072 - MLT1A1 LTR MaLR 0 365 1 287 309 65 14 chr4 24738590 24738607 -159550055 - L2 LINE L2 -140 3173 3158 959 182 68 27 chr4 24738901 24738990 -159549672 - MER46A DNA MER2_type -2502 229 145 2066 122 29 32 chr4 24738990 24739366 -159549296 - THE1C LTR MaLR 0 375 1 959 182 68 27 chr4 24739366 24739496 -159549166 - MER46A DNA MER2_type -2586 145 1 327 327 82 0 chr4 24739581 24739740 -159548922 - MLT1J1 LTR MaLR -148 298 127 714 139 35 0 chr4 24739933 24740048 -159548614 - FLAM_C SINE Alu -11 132 14 252 342 89 14 chr4 24740556 24740837 -159547825 - L1ME LINE L1 -297 5824 5523 243 0 0 0 chr4 24740885 24740912 -159547750 + (CA)n Simple_repeat Simple_repeat 2 28 0 267 231 112 0 chr4 24741149 24741254 -159547408 - MIR SINE MIR -68 140 66 270 177 0 198 chr4 24741266 24741362 -159547300 - L2 LINE L2 -2 3311 3235 278 316 162 0 chr4 24742286 24742403 -159546259 - MIR SINE MIR -19 243 108 1999 137 11 0 chr4 24742490 24742794 -159545868 + AluSx SINE Alu 1 307 0 295 384 38 0 chr4 24742796 24742929 -159545733 - MIR3 SINE MIR -31 177 40 569 318 47 35 chr4 24743011 24743266 -159545396 + MIR SINE MIR 3 260 -2 186 357 62 16 chr4 24744728 24744857 -159543805 + MIR SINE MIR 36 170 -92 1162 200 230 36 chr4 24745759 24746256 -159542406 - MLT1E2 LTR MaLR 0 626 62 33 0 0 0 chr4 24746823 24746856 -159541806 + AT_rich Low_complexity Low_complexity 1 33 0 2060 111 0 4 chr4 24746858 24747163 -159541499 + AluSx SINE Alu 4 307 0 1147 142 15 20 chr4 24747175 24747379 -159541283 - MER2 DNA MER2_type -142 203 1 364 194 43 11 chr4 24747546 24747639 -159541023 + MLT1L LTR MaLR 513 608 -7 2253 95 0 3 chr4 24747878 24748173 -159540489 - AluY SINE Alu -17 294 1 262 286 168 30 chr4 24748174 24748377 -159540285 - MIR SINE MIR 0 262 32 199 363 65 8 chr4 24748498 24748622 -159540040 - L2 LINE L2 -18 3295 3165 2029 115 44 3 chr4 24748842 24749137 -159539525 - AluSq SINE Alu -6 307 1 208 294 29 15 chr4 24749361 24749429 -159539233 + MIR SINE MIR 65 133 -129 311 317 33 17 chr4 24750249 24750369 -159538293 + MIR SINE MIR 131 252 -10 200 229 21 21 chr4 24750590 24750638 -159538024 + MIR SINE MIR 65 112 -150 333 268 258 41 chr4 24750658 24751027 -159537635 - L2 LINE L2 0 3313 2865 202 380 56 0 chr4 24751090 24751198 -159537464 + MIR SINE MIR 130 243 -19 348 321 19 0 chr4 24751253 24751359 -159537303 - L2 LINE L2 -2 3311 3204 1684 166 13 36 chr4 24751622 24751930 -159536732 + AluJo SINE Alu 1 301 -11 1575 209 3 31 chr4 24753166 24753259 -159535403 + MLT1A1 LTR MaLR 1 95 -270 2337 136 22 5 chr4 24753259 24753628 -159535034 - THE1C LTR MaLR 0 375 1 1575 209 3 31 chr4 24753628 24753888 -159534774 + MLT1A1 LTR MaLR 95 344 -21 205 369 104 18 chr4 24753943 24754279 -159534383 - L2 LINE L2 -955 2359 1995 621 297 30 42 chr4 24754349 24754585 -159534077 + MIR SINE MIR 17 249 -13 976 186 48 5 chr4 24754665 24754875 -159533787 + L1MD2 LINE L1 6139 6357 -2 271 312 92 50 chr4 24754876 24755094 -159533568 - L2 LINE L2 -1389 1925 1699 200 310 0 0 chr4 24755168 24755226 -159533436 + GA-rich Low_complexity Low_complexity 4 61 0 1340 227 52 45 chr4 24755814 24756237 -159532425 + MLT1D LTR MaLR 80 505 0 236 316 58 58 chr4 24756410 24756616 -159532046 - L2 LINE L2 -2419 895 690 268 296 30 53 chr4 24756786 24756918 -159531744 + MLT1K LTR MaLR 108 236 -352 444 242 83 13 chr4 24756961 24757118 -159531544 + MLT1K LTR MaLR 420 587 -1 2340 108 20 8 chr4 24757619 24757970 -159530692 - THE1A LTR MaLR 0 355 1 11602 95 8 4 chr4 24757970 24759544 -159529118 - THE1A-int LTR MaLR 0 1580 1 2238 116 14 11 chr4 24759544 24759898 -159528764 - THE1A LTR MaLR 0 355 1 267 280 40 0 chr4 24760122 24760197 -159528465 - L2 LINE L2 -25 3247 3170 242 277 15 0 chr4 24760770 24760835 -159527827 + CT-rich Low_complexity Low_complexity 3 68 0 204 40 0 0 chr4 24761524 24761549 -159527113 + (T)n Simple_repeat Simple_repeat 1 25 0 320 119 0 15 chr4 24761951 24762018 -159526644 + L1 LINE L1 4971 5036 -1110 3763 141 8 2 chr4 24762049 24762660 -159526002 + L1PA16 LINE L1 5538 6152 -14 384 341 48 24 chr4 24764243 24764410 -159524252 + L2 LINE L2 3102 3272 0 247 184 20 0 chr4 24765695 24765744 -159522918 + MLT1H LTR MaLR 12 61 -488 294 250 58 0 chr4 24766002 24766106 -159522556 + MLT1H LTR MaLR 434 543 -6 3741 147 75 5 chr4 24766159 24766910 -159521752 - Tigger3(Golem) DNA MER2_type 0 3029 2227 1522 283 49 5 chr4 24767263 24767877 -159520785 + L1ME2 LINE L1 1462 2102 -4294 1398 224 87 16 chr4 24767896 24768275 -159520387 + MLT2D LTR ERVL 8 413 -1 2234 101 30 0 chr4 24768297 24768593 -159520069 + AluSx SINE Alu 1 305 -7 684 228 82 22 chr4 24768595 24768877 -159519785 + L1ME2 LINE L1 2141 2488 -3908 323 318 20 0 chr4 24768911 24769112 -159519550 + L1ME2 LINE L1 2501 2705 -3510 1228 262 57 49 chr4 24769122 24769751 -159518911 + L1ME2 LINE L1 5561 6194 -39 3469 120 11 17 chr4 24769759 24770060 -159518602 - MER1A DNA MER1_type -2173 529 231 2340 118 28 25 chr4 24770060 24770423 -159518239 + THE1B LTR MaLR 1 364 0 3469 120 11 17 chr4 24770423 24770653 -159518009 - MER1A DNA MER1_type -2471 231 1 272 301 32 0 chr4 24772220 24772313 -159516349 + MIR SINE MIR 131 226 -36 411 141 0 24 chr4 24772500 24772585 -159516077 - AluJ/FRAM SINE Alu 0 312 230 1305 222 163 120 chr4 24773604 24774231 -159514431 + MLT1E2 LTR MaLR 1 626 0 5535 261 70 35 chr4 24774650 24774703 -159513959 + L1M2a LINE L1 3 53 -7114 363 60 0 0 chr4 24774703 24774753 -159513909 + (CA)n Simple_repeat Simple_repeat 1 50 0 5535 261 70 35 chr4 24774753 24778302 -159510360 + L1M2a LINE L1 53 3475 -3692 491 115 11 73 chr4 24778328 24778519 -159510143 + (TA)n Simple_repeat Simple_repeat 2 180 0 2327 219 38 25 chr4 24778537 24778998 -159509664 + L1M2a LINE L1 3480 3954 -3213 2330 79 3 3 chr4 24778998 24779303 -159509359 + AluY SINE Alu 1 305 -6 2327 219 38 25 chr4 24779303 24779532 -159509130 + L1M2a LINE L1 3954 4179 -2988 1315 193 0 92 chr4 24779562 24779888 -159508774 + AluJb SINE Alu 9 304 -8 351 65 0 0 chr4 24779888 24779934 -159508728 + (GA)n Simple_repeat Simple_repeat 1 46 0 378 42 0 0 chr4 24779934 24779982 -159508680 + (GGAA)n Simple_repeat Simple_repeat 1 48 0 533 298 96 10 chr4 24780080 24780278 -159508384 + MIR SINE MIR 30 244 -18 428 341 30 0 chr4 24780305 24780472 -159508190 - MIR SINE MIR -5 257 86 767 179 0 14 chr4 24781396 24781536 -159507126 - FLAM_C SINE Alu 0 143 6 380 291 70 70 chr4 24782065 24782350 -159506312 - HAL1b LINE L1 -975 373 89 26 50 0 0 chr4 24782707 24782747 -159505915 + AT_rich Low_complexity Low_complexity 1 40 0 697 236 126 5 chr4 24783605 24783796 -159504866 + MER58C DNA MER1_type 2 215 0 201 39 0 0 chr4 24786670 24786696 -159501966 + (GA)n Simple_repeat Simple_repeat 1 26 0 413 273 20 53 chr4 24787518 24787668 -159500994 - MER5A DNA MER1_type -10 179 35 282 56 0 0 chr4 24787685 24787721 -159500941 + (TG)n Simple_repeat Simple_repeat 1 36 0 218 383 61 9 chr4 24787832 24787947 -159500715 - L2 LINE L2 -575 2739 2619 496 293 56 13 chr4 24788736 24789088 -159499574 + MLT1L LTR MaLR 82 478 -137 231 61 0 0 chr4 24789127 24789160 -159499502 + (TG)n Simple_repeat Simple_repeat 2 34 0 293 331 48 6 chr4 24789656 24789822 -159498840 + MIR SINE MIR 90 262 0 486 274 147 32 chr4 24790305 24790462 -159498200 + MER5A DNA MER1_type 15 189 0 298 216 91 23 chr4 24790694 24790782 -159497880 + MIR SINE MIR 24 117 -145 180 348 37 22 chr4 24791974 24792109 -159496553 - MIR SINE MIR -60 202 66 2203 118 0 16 chr4 24792172 24792476 -159496186 + AluSx SINE Alu 1 299 -13 225 335 78 30 chr4 24794266 24794433 -159494229 - MIR SINE MIR -17 245 71 227 275 29 0 chr4 24795061 24795130 -159493532 - MIR SINE MIR -6 256 186 2065 112 7 7 chr4 24796049 24796352 -159492310 - AluSq SINE Alu -10 303 1 227 310 10 20 chr4 24796353 24796453 -159492209 + MIR SINE MIR 164 262 0 192 152 0 0 chr4 24796861 24796894 -159491768 + L2 LINE L2 3279 3311 -2 229 372 68 14 chr4 24797112 24797260 -159491402 - MIR3 SINE MIR -11 197 42 340 361 45 8 chr4 24797268 24797401 -159491261 - MIR3 SINE MIR -3 205 68 4748 55 26 0 chr4 24797777 24798412 -159490250 + L1PA5 LINE L1 5522 6172 0 984 211 10 19 chr4 24798412 24798620 -159490042 + MER77 LTR ERV1 393 598 -7 809 210 99 8 chr4 24798873 24799135 -159489527 - AluSx SINE Alu -14 288 3 15739 83 11 3 chr4 24800324 24802695 -159485967 + L1P LINE L1 1756 4145 -2001 799 175 13 0 chr4 24802826 24802980 -159485682 + MLT1A2 LTR MaLR 1 156 -218 366 169 40 8 chr4 24802999 24803123 -159485539 + CT-rich Low_complexity Low_complexity 1 128 0 858 176 33 22 chr4 24803145 24803327 -159485335 + MLT1A2 LTR MaLR 189 372 -2 24 0 0 0 chr4 24803345 24803369 -159485293 + AT_rich Low_complexity Low_complexity 1 24 0 761 307 38 4 chr4 24803445 24803683 -159484979 - MIR SINE MIR -1 261 16 962 232 101 37 chr4 24803697 24804133 -159484529 - MLT1C LTR MaLR 0 467 4 226 313 16 8 chr4 24804173 24804301 -159484361 + MLT1A1 LTR MaLR 15 143 -222 14385 27 6 4 chr4 24804979 24807014 -159481648 - L1P2 LINE L1 -558 5597 3560 1096 198 27 31 chr4 24807118 24807375 -159481287 + MLT1A1 LTR MaLR 99 354 -11 200 326 58 0 chr4 24807387 24807473 -159481189 - L2 LINE L2 -619 2695 2605 744 234 41 20 chr4 24807533 24807730 -159480932 + MIR SINE MIR 3 203 -59 26 82 0 0 chr4 24807876 24807937 -159480725 + AT_rich Low_complexity Low_complexity 1 61 0 2289 104 0 0 chr4 24808012 24808299 -159480363 + AluSc SINE Alu 1 287 -22 207 0 0 0 chr4 24808839 24808862 -159479800 + (T)n Simple_repeat Simple_repeat 1 23 0 766 361 81 48 chr4 24808868 24809907 -159478755 - L2 LINE L2 -624 2690 1597 1567 149 17 64 chr4 24809907 24810241 -159478421 + AluJo SINE Alu 3 322 0 766 361 81 48 chr4 24810241 24810483 -159478179 - L2 LINE L2 -1717 1597 1365 520 325 75 13 chr4 24810600 24810828 -159477834 + MLT1G LTR MaLR 35 276 -314 1433 219 53 35 chr4 24810830 24811205 -159477457 - MLT1B LTR MaLR 0 390 9 2178 112 0 0 chr4 24811762 24812058 -159476604 + AluSc SINE Alu 4 299 -10 2450 94 0 0 chr4 24812810 24813119 -159475543 - AluY SINE Alu -2 309 1 256 390 73 12 chr4 24813254 24813418 -159475244 + L2 LINE L2 2550 2723 -591 978 249 24 37 chr4 24813427 24813724 -159474938 + L2 LINE L2 2175 2467 -847 351 277 39 69 chr4 24813727 24813857 -159474805 - MIR SINE MIR -135 127 2 253 398 8 8 chr4 24814136 24814264 -159474398 + MIR3 SINE MIR 34 161 -47 413 235 142 29 chr4 24814817 24814998 -159473664 - MIR SINE MIR -56 206 9 24 0 0 0 chr4 24816363 24816387 -159472275 + AT_rich Low_complexity Low_complexity 1 24 0 229 274 70 27 chr4 24816670 24816811 -159471851 + MIR SINE MIR 56 207 -55 1446 105 0 25 chr4 24816942 24817163 -159471499 + AluSg/x SINE Alu 95 312 0 351 295 102 12 chr4 24817961 24818127 -159470535 - L2 LINE L2 -16 3297 3117 500 286 77 43 chr4 24818729 24818963 -159469699 + L2 LINE L2 1914 2155 -1159 618 324 29 12 chr4 24818973 24819214 -159469448 + MIR SINE MIR 12 256 -6 1333 344 69 20 chr4 24819226 24820052 -159468610 + L2 LINE L2 2179 3047 -266 2038 155 6 3 chr4 24820125 24820466 -159468196 - MLT2C1 LTR ERVL -55 342 1 290 333 39 34 chr4 24820498 24820702 -159467960 + L2 LINE L2 3098 3302 -11 26 0 0 0 chr4 24821269 24821295 -159467367 + AT_rich Low_complexity Low_complexity 1 26 0 225 0 0 0 chr4 24821308 24821333 -159467329 + (TA)n Simple_repeat Simple_repeat 1 25 0 1927 149 3 26 chr4 24821333 24821635 -159467027 - AluSx SINE Alu -17 295 1 329 248 114 0 chr4 24822068 24822215 -159466447 + MLT1J2 LTR MaLR 9 148 -302 311 283 0 0 chr4 24822945 24823065 -159465597 + (TA)n Simple_repeat Simple_repeat 2 121 0 197 83 28 0 chr4 24823124 24823160 -159465502 + (TA)n Simple_repeat Simple_repeat 1 37 0 218 233 0 0 chr4 24823284 24823327 -159465335 + (TAA)n Simple_repeat Simple_repeat 3 45 0 242 231 204 20 chr4 24823328 24823475 -159465187 - MIR SINE MIR 0 262 89 2217 200 155 10 chr4 24823533 24824024 -159464638 + MER68 LTR ERV1 1 562 0 708 300 103 13 chr4 24824064 24824444 -159464218 + MLT1J2 LTR MaLR 37 450 0 409 343 87 27 chr4 24824894 24825113 -159463549 - L2 LINE L2 0 3272 3041 378 341 40 48 chr4 24825124 24825476 -159463186 + L2 LINE L2 2432 2780 -534 187 294 119 57 chr4 24825898 24826075 -159462587 - L2 LINE L2 -262 3010 2823 308 317 0 0 chr4 24826110 24826192 -159462470 + L2 LINE L2 3226 3307 -6 243 0 0 0 chr4 24826226 24826253 -159462409 + (A)n Simple_repeat Simple_repeat 1 27 0 236 349 65 62 chr4 24826253 24826556 -159462106 - L2 LINE L2 -561 2753 2447 1973 152 7 0 chr4 24826556 24826852 -159461810 - AluSx SINE Alu -14 298 1 236 349 65 62 chr4 24826852 24826889 -159461773 - L2 LINE L2 -867 2447 2412 1777 159 0 0 chr4 24827092 24827375 -159461287 + AluSx SINE Alu 1 283 -29 198 0 0 0 chr4 24827379 24827401 -159461261 + (CACAA)n Simple_repeat Simple_repeat 4 25 0 246 184 0 0 chr4 24827451 24827500 -159461162 - MADE1 DNA Mariner 0 80 32 740 122 0 0 chr4 24827802 24827934 -159460728 + AluSg/x SINE Alu 176 307 0 460 136 0 12 chr4 24827984 24828065 -159460597 - MADE1 DNA Mariner 0 80 1 184 339 15 0 chr4 24828644 24828709 -159459953 - MIR SINE MIR -61 147 82 678 228 29 19 chr4 24829577 24829783 -159458879 + LTR7 LTR ERV1 238 445 -5 835 290 60 39 chr4 24829846 24830229 -159458433 + MLT1E3 LTR MaLR 200 621 -3 212 86 29 0 chr4 24830831 24830866 -159457796 + (CA)n Simple_repeat Simple_repeat 2 37 0 668 286 17 0 chr4 24830990 24831165 -159457497 + MER5B DNA MER1_type 1 178 0 942 175 0 29 chr4 24831504 24831675 -159456987 + MER5A DNA MER1_type 1 166 -23 291 342 12 19 chr4 24832448 24832695 -159455967 + GA-rich Low_complexity Low_complexity 1 245 0 229 383 25 25 chr4 24833978 24834098 -159454564 + L2 LINE L2 3132 3251 -21 4506 88 32 1 chr4 24835211 24835872 -159452790 - L1PA11 LINE L1 0 6174 5494 695 165 0 0 chr4 24836076 24836219 -159452443 + AluJb SINE Alu 167 309 0 7809 171 11 9 chr4 24836275 24838822 -159449840 + L1PB1 LINE L1 3607 6150 -1 277 269 0 0 chr4 24839191 24839269 -159449393 - MER103 DNA DNA -87 79 2 394 304 48 18 chr4 24841551 24841719 -159446943 - MIR SINE MIR -8 254 82 224 352 67 0 chr4 24841907 24842012 -159446650 + L2 LINE L2 1753 1864 -1450 406 139 212 16 chr4 24842015 24842105 -159446557 + MLT1B LTR MaLR 6 109 -265 2441 82 3 9 chr4 24842105 24842420 -159446242 + AluSq SINE Alu 1 313 0 406 139 212 16 chr4 24842420 24842436 -159446226 + MLT1B LTR MaLR 109 121 -253 714 185 17 5 chr4 24842458 24842607 -159446055 + MLT1B LTR MaLR 240 390 0 507 232 40 81 chr4 24842700 24842898 -159445764 - MIR SINE MIR -65 197 8 580 281 9 62 chr4 24842937 24843161 -159445501 - MIR SINE MIR -44 218 7 2138 145 6 0 chr4 24844305 24844616 -159444046 - AluSq SINE Alu 0 313 1 2066 133 0 0 chr4 24846149 24846465 -159442197 - AluSg SINE Alu 0 318 3 3115 106 12 33 chr4 24846832 24847208 -159441454 + L1PA13 LINE L1 5678 6043 -120 3230 162 32 68 chr4 24847208 24847925 -159440737 - LTR8 LTR ERV1 0 691 1 3115 106 12 33 chr4 24847925 24848037 -159440625 + L1PA13 LINE L1 6043 6156 -7 312 311 0 0 chr4 24848124 24848214 -159440448 + L1MC4 LINE L1 6614 6703 -1339 350 293 0 13 chr4 24848224 24848381 -159440281 + (TATATG)n Simple_repeat Simple_repeat 5 159 0 239 259 47 0 chr4 24848393 24848478 -159440184 + L1MC4 LINE L1 6615 6703 -1339 213 233 33 0 chr4 24848479 24848569 -159440093 + (TA)n Simple_repeat Simple_repeat 2 94 0 489 257 74 64 chr4 24848570 24848772 -159439890 - MIR SINE MIR -57 205 2 268 366 24 16 chr4 24849262 24849385 -159439277 - MIR SINE MIR -108 154 31 26 0 0 0 chr4 24849581 24849607 -159439055 + AT_rich Low_complexity Low_complexity 1 26 0 2062 203 67 9 chr4 24849608 24850144 -159438518 + L1MA9 LINE L1 5704 6270 -42 7506 192 17 19 chr4 24850174 24851913 -159436749 + L1PA16 LINE L1 3477 5207 -959 2372 47 40 0 chr4 24851913 24852211 -159436451 + L1PA4 LINE L1 5846 6155 0 7506 192 17 19 chr4 24852211 24853169 -159435493 + L1PA16 LINE L1 5207 6165 -1 272 230 137 108 chr4 24853489 24853628 -159435034 + MIR SINE MIR 108 250 -12 202 146 0 49 chr4 24853596 24853637 -159435025 + L2 LINE L2 3264 3302 -11 * 257 323 0 10 chr4 24853790 24853889 -159434773 + MIR SINE MIR 92 189 -73 738 309 42 8 chr4 24853976 24854212 -159434450 + MIR SINE MIR 18 261 -1 316 259 101 29 chr4 24854175 24854314 -159434348 - MIR SINE MIR -33 229 81 * 2098 135 125 13 chr4 24854314 24854699 -159433963 + MSTA LTR MaLR 1 428 0 529 269 8 8 chr4 24855298 24855432 -159433230 - L2 LINE L2 0 3313 3180 519 344 11 0 chr4 24855426 24855609 -159433053 - L2 LINE L2 -981 2333 2149 * 21 0 0 0 chr4 24855640 24855661 -159433001 + AT_rich Low_complexity Low_complexity 1 21 0 345 356 68 5 chr4 24857344 24857549 -159431113 + MIR SINE MIR 2 219 -43 751 286 64 5 chr4 24858241 24858461 -159430201 - MIR SINE MIR 0 262 30 272 292 42 46 chr4 24858772 24858947 -159429715 + MIR3 SINE MIR 13 189 -73 676 234 59 42 chr4 24859432 24859671 -159428991 + MIR SINE MIR 15 257 -5 183 333 0 42 chr4 24860488 24860560 -159428102 - MIR SINE MIR -74 134 66 2279 73 7 23 chr4 24860752 24861052 -159427610 - AluSc SINE Alu -14 295 1 343 305 134 6 chr4 24861199 24861363 -159427299 + LTR33 LTR ERVL 39 223 -298 481 266 126 22 chr4 24861394 24861616 -159427046 + LTR33 LTR ERVL 276 520 -1 313 295 98 18 chr4 24861639 24861751 -159426911 + MIR SINE MIR 22 142 -66 211 383 0 26 chr4 24861983 24862098 -159426564 + MIR SINE MIR 33 144 -118 288 259 306 7 chr4 24862264 24862411 -159426251 + MIR SINE MIR 13 203 -59 452 290 140 45 chr4 24862520 24862855 -159425807 + L2 LINE L2 2945 3311 -2 481 283 63 63 chr4 24864025 24864294 -159424368 + L1ME4a LINE L1 5616 5884 -237 347 196 105 98 chr4 24865168 24865229 -159423433 + L2 LINE L2 3168 3227 -86 186 71 0 0 chr4 24865229 24865257 -159423405 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 347 196 105 98 chr4 24865257 24865338 -159423324 + L2 LINE L2 3227 3311 -2 1815 154 85 6 chr4 24865861 24866192 -159422470 + MLT2C1 LTR ERVL 1 357 -40 261 129 43 29 chr4 24866194 24866264 -159422398 + (TATATG)n Simple_repeat Simple_repeat 1 71 0 279 105 0 0 chr4 24866270 24866308 -159422354 + MLT2C1 LTR ERVL 360 397 0 312 283 148 49 chr4 24868023 24868246 -159420416 + L2 LINE L2 2701 2945 -369 192 314 0 0 chr4 24868281 24868332 -159420330 + L2 LINE L2 3222 3272 0 1252 76 5 103 chr4 24868403 24868626 -159420036 - L1PA8 LINE L1 -13 6159 5959 2170 119 24 0 chr4 24868888 24869182 -159419480 - AluSx SINE Alu -11 301 1 3274 134 59 35 chr4 24869290 24869881 -159418781 + LTR8A LTR ERV1 123 727 0 252 268 103 21 chr4 24869881 24869978 -159418684 + MIR SINE MIR 155 259 -3 315 341 39 16 chr4 24870006 24870135 -159418527 + L2 LINE L2 2916 3047 -225 426 348 59 16 chr4 24870271 24870593 -159418069 + L1MEc LINE L1 772 1107 -6031 1478 290 98 27 chr4 24871033 24871586 -159417076 + L1MEc LINE L1 1331 1843 -5295 234 0 0 0 chr4 24871586 24871612 -159417050 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1478 290 98 27 chr4 24871612 24872434 -159416228 + L1MEc LINE L1 1843 2991 -4147 316 315 22 0 chr4 24872442 24872531 -159416131 + L2 LINE L2 3222 3312 -1 524 307 27 70 chr4 24874296 24874625 -159414037 - L2 LINE L2 0 3313 2999 189 217 22 0 chr4 24874659 24874705 -159413957 + L2 LINE L2 3261 3307 -6 2144 107 0 0 chr4 24875507 24875812 -159412850 + AluSc SINE Alu 1 305 0 581 88 0 0 chr4 24875948 24876028 -159412634 - MADE1 DNA Mariner 0 80 1 205 189 16 74 chr4 24876558 24876748 -159411914 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 296 291 55 39 chr4 24877168 24877295 -159411367 - MER94 DNA DNA 0 134 6 210 313 30 0 chr4 24877536 24877603 -159411059 + MIR SINE MIR 53 121 -141 1924 153 0 3 chr4 24877605 24877906 -159410756 - AluJo SINE Alu -12 300 1 25 0 0 0 chr4 24878048 24878073 -159410589 + AT_rich Low_complexity Low_complexity 1 25 0 1951 100 0 0 chr4 24878104 24878354 -159410308 - AluSq SINE Alu -54 259 10 432 263 8 34 chr4 24878743 24878861 -159409801 - L2 LINE L2 -499 2815 2701 189 288 38 50 chr4 24878900 24878980 -159409682 - L2 LINE L2 -86 3227 3149 369 291 108 44 chr4 24879098 24879301 -159409361 - MIR SINE MIR -44 218 3 245 233 68 68 chr4 24879588 24879691 -159408971 + MIR SINE MIR 121 223 -39 188 296 91 45 chr4 24879819 24879907 -159408755 - L2 LINE L2 0 3313 3222 278 285 41 65 chr4 24879944 24880067 -159408595 + MER5B DNA MER1_type 9 128 -50 533 298 29 22 chr4 24880119 24880389 -159408273 + Charlie8 DNA MER1_type 3 265 -2152 327 193 0 0 chr4 24880419 24880476 -159408186 + Charlie8 DNA MER1_type 1351 1407 -1010 1768 224 57 9 chr4 24880515 24880956 -159407706 + MLT1C LTR MaLR 6 467 0 319 294 25 0 chr4 24881472 24881591 -159407071 + L2 LINE L2 2934 3055 -258 1592 168 28 88 chr4 24881663 24882061 -159406601 + MLT1B LTR MaLR 1 374 -16 2465 171 77 21 chr4 24882061 24882540 -159406122 + MLT2B2 LTR ERVL 1 506 -9 484 281 54 30 chr4 24882702 24882869 -159405793 + L2 LINE L2 3120 3290 -23 222 106 30 30 chr4 24882923 24882989 -159405673 + (TCTA)n Simple_repeat Simple_repeat 4 69 0 285 325 122 21 chr4 24883006 24883194 -159405468 - MIR SINE MIR -7 255 49 308 289 48 0 chr4 24884579 24884662 -159404000 + L2 LINE L2 3227 3313 0 410 264 186 0 chr4 24885536 24885665 -159402997 + MER5A DNA MER1_type 36 188 -1 510 230 79 0 chr4 24885849 24885975 -159402687 + MIR SINE MIR 56 191 -71 2248 122 0 0 chr4 24886690 24887002 -159401660 - AluSq SINE Alu -1 312 1 568 101 0 0 chr4 24887546 24887625 -159401037 - MER4E LTR ERV1 -154 612 534 2588 102 3 0 chr4 24887652 24888006 -159400656 + MER4E LTR ERV1 412 766 0 315 164 0 0 chr4 24888490 24888551 -159400111 + (TA)n Simple_repeat Simple_repeat 1 61 0 195 100 0 0 chr4 24889076 24889106 -159399556 + (GGA)n Simple_repeat Simple_repeat 3 32 0 1451 161 28 35 chr4 24889264 24889549 -159399113 - MLT1B LTR MaLR 0 390 108 1930 151 0 31 chr4 24889683 24890002 -159398660 - AluSg SINE Alu -1 309 1 609 175 26 0 chr4 24890066 24890180 -159398482 - MLT1B LTR MaLR -272 118 2 360 200 30 0 chr4 24890228 24890328 -159398334 + CT-rich Low_complexity Low_complexity 2 104 0 194 281 16 78 chr4 24891010 24891138 -159397524 - L2 LINE L2 -849 2465 2346 * 413 245 38 19 chr4 24891137 24891243 -159397419 + L2 LINE L2 3200 3307 -6 335 311 60 20 chr4 24891521 24891672 -159396990 + MIR SINE MIR 52 208 -54 1260 52 0 0 chr4 24891898 24892051 -159396611 - AluY SINE Alu -10 301 149 2274 94 10 0 chr4 24892278 24892577 -159396085 - AluSg SINE Alu -8 302 1 453 296 21 32 chr4 24892931 24893117 -159395545 + MIR SINE MIR 79 262 0 402 235 66 12 chr4 24893162 24893328 -159395334 + L1ME4a LINE L1 5722 5896 -225 231 133 0 0 chr4 24894440 24894485 -159394177 + (TG)n Simple_repeat Simple_repeat 2 46 0 820 206 15 15 chr4 24896402 24896606 -159392056 + L1MB5 LINE L1 4171 4374 -1772 4066 188 30 29 chr4 24896655 24897743 -159390919 + L1MB5 LINE L1 5086 6173 -1 749 219 93 61 chr4 24897853 24898056 -159390606 + MIR SINE MIR 7 221 -41 2443 84 0 3 chr4 24898056 24898365 -159390297 + AluSq SINE Alu 1 308 -5 749 219 93 61 chr4 24898365 24898407 -159390255 + MIR SINE MIR 221 260 -2 1769 166 75 7 chr4 24898452 24898759 -159389903 + MLT1A1 LTR MaLR 23 350 -15 23 0 0 0 chr4 24898763 24898786 -159389876 + AT_rich Low_complexity Low_complexity 1 23 0 204 171 24 0 chr4 24899857 24899898 -159388764 + (TA)n Simple_repeat Simple_repeat 1 42 0 612 0 0 0 chr4 24901168 24901236 -159387426 + (TA)n Simple_repeat Simple_repeat 1 68 0 1879 117 33 4 chr4 24901239 24901512 -159387150 - AluSc SINE Alu -28 281 1 342 200 50 0 chr4 24901896 24901976 -159386686 + AluS SINE Alu 1 84 -219 199 330 230 21 chr4 24902289 24902528 -159386134 - L3b LINE CR1 0 1583 1295 338 330 9 0 chr4 24902747 24902853 -159385809 - L2 LINE L2 -10 3303 3197 2412 75 0 0 chr4 24903610 24903915 -159384747 + AluY SINE Alu 4 308 -3 184 154 0 51 chr4 24903965 24904004 -159384658 + L2 LINE L2 3268 3304 -9 231 312 44 92 chr4 24904838 24904895 -159383767 - L2 LINE L2 -568 2746 2688 2241 99 10 0 chr4 24904895 24905199 -159383463 + AluSg SINE Alu 1 307 -3 231 312 44 92 chr4 24905199 24905391 -159383271 - L2 LINE L2 -626 2688 2509 342 200 44 59 chr4 24906078 24906213 -159382449 + Charlie2 DNA MER1_type 2714 2846 -16 210 313 0 30 chr4 24906248 24906315 -159382347 + MIR SINE MIR 31 95 -113 1994 196 21 18 chr4 24906319 24906702 -159381960 + MLT2B1 LTR ERVL 1 376 -38 462 114 0 0 chr4 24906702 24906772 -159381890 + (TCTA)n Simple_repeat Simple_repeat 2 71 0 1994 196 21 18 chr4 24906772 24906812 -159381850 + MLT2B1 LTR ERVL 376 414 0 253 308 0 0 chr4 24906819 24906884 -159381778 + MIR3 SINE MIR 98 162 -46 192 125 0 0 chr4 24907139 24907171 -159381491 + (TG)n Simple_repeat Simple_repeat 1 32 0 286 370 44 5 chr4 24907188 24907391 -159381271 - MARNA DNA Mariner -366 220 10 216 195 169 13 chr4 24908698 24908775 -159379887 + L2 LINE L2 3184 3272 0 206 333 173 0 chr4 24908981 24909056 -159379606 - L2 LINE L2 -48 3224 3137 380 219 135 0 chr4 24909239 24909335 -159379327 - MER105 DNA DNA -45 159 51 3215 106 101 4 chr4 24909415 24909908 -159378754 + MER41A LTR ERV1 14 554 0 2267 212 27 25 chr4 24909939 24910420 -159378242 - MER68 LTR ERV1 -80 482 1 2050 131 6 22 chr4 24911148 24911462 -159377200 - AluSg SINE Alu -1 309 1 9648 207 54 19 chr4 24912480 24915362 -159373300 + L1MA9 LINE L1 2806 5797 -515 327 65 0 0 chr4 24915362 24915408 -159373254 + (CA)n Simple_repeat Simple_repeat 2 47 0 9648 207 54 19 chr4 24915408 24915424 -159373238 + L1MA9 LINE L1 5797 5811 -501 575 206 0 0 chr4 24915525 24915622 -159373040 - MER7A DNA MER2_type -251 95 1 634 193 28 42 chr4 24915622 24915834 -159372828 + L1MA9 LINE L1 5905 6113 -199 236 238 0 81 chr4 24915985 24916170 -159372492 + (TATAA)n Simple_repeat Simple_repeat 3 172 0 * 278 268 36 18 chr4 24916101 24916269 -159372393 + (TATAG)n Simple_repeat Simple_repeat 4 174 0 210 270 11 65 chr4 24916183 24916368 -159372294 + (TATAA)n Simple_repeat Simple_repeat 3 177 0 * 406 219 73 46 chr4 24916392 24916543 -159372119 + L1MA9 LINE L1 6119 6273 -39 2013 153 7 0 chr4 24916828 24917135 -159371527 + AluSx SINE Alu 3 311 -1 180 111 0 0 chr4 24917599 24917626 -159371036 + (A)n Simple_repeat Simple_repeat 1 27 0 225 383 30 35 chr4 24918235 24918465 -159370197 + L2 LINE L2 1942 2170 -1144 * 585 208 28 56 chr4 24918459 24918637 -159370025 - L2 LINE L2 -42 3271 3099 1332 221 83 47 chr4 24918638 24919081 -159369581 - MLT1C LTR MaLR 0 467 9 266 333 176 15 chr4 24919144 24919405 -159369257 + L2 LINE L2 2301 2603 -711 345 280 63 14 chr4 24919772 24919915 -159368747 - MIR SINE MIR -19 243 94 229 274 0 0 chr4 24920210 24920261 -159368401 - L2 LINE L2 0 3272 3222 2542 77 0 0 chr4 24921085 24921396 -159367266 - AluY SINE Alu 0 311 1 193 390 38 9 chr4 24922746 24922959 -159365703 + L2 LINE L2 1763 1981 -1333 2110 115 14 0 chr4 24923226 24923534 -159365128 - AluSc SINE Alu 0 312 1 326 373 84 3 chr4 24923536 24923820 -159364842 + L2 LINE L2 2356 2662 -652 367 344 60 67 chr4 24923958 24924289 -159364373 + L2 LINE L2 2924 3252 -20 361 348 70 0 chr4 24924752 24924939 -159363723 + MIR SINE MIR 21 220 -42 390 253 129 47 chr4 24925798 24925968 -159362694 - L2 LINE L2 -13 3300 3117 216 336 136 9 chr4 24926159 24926269 -159362393 - MIR SINE MIR -115 147 24 430 291 8 8 chr4 24926353 24926480 -159362182 - MIR SINE MIR -48 214 88 2550 74 0 0 chr4 24926523 24926834 -159361828 - AluSq SINE Alu -2 311 1 506 290 118 5 chr4 24927370 24927556 -159361106 - MIR SINE MIR -15 247 41 250 233 89 44 chr4 24927872 24927962 -159360700 + MIR SINE MIR 87 180 -82 432 198 167 62 chr4 24928965 24929127 -159359535 + MER5A DNA MER1_type 11 189 0 435 346 135 10 chr4 24929882 24930392 -159358270 - L2 LINE L2 0 3313 2745 181 238 0 24 chr4 24930539 24930581 -159358081 - MIR SINE MIR -14 248 208 221 336 36 27 chr4 24930750 24930860 -159357802 + MER5A DNA MER1_type 52 162 -27 1992 140 0 0 chr4 24931045 24931331 -159357331 - AluSx SINE Alu -26 286 1 349 267 119 20 chr4 24931754 24931855 -159356807 + MIR SINE MIR 40 150 -58 5196 22 0 0 chr4 24933272 24933893 -159354769 + L1PA3 LINE L1 5544 6164 0 237 159 114 11 chr4 24933908 24933996 -159354666 - MER69 DNA AcHobo -124 2402 2306 770 243 11 23 chr4 24934802 24934979 -159353683 + MLT1A2 LTR MaLR 17 191 -183 770 211 62 10 chr4 24935012 24935206 -159353456 + MLT1B LTR MaLR 187 390 0 236 338 15 0 chr4 24935833 24935901 -159352761 + L2 LINE L2 3228 3296 -17 29 0 0 0 chr4 24936543 24936572 -159352090 + AT_rich Low_complexity Low_complexity 1 29 0 1779 207 19 11 chr4 24936617 24936979 -159351683 - MLT1A1 LTR MaLR 0 365 1 198 267 0 144 chr4 24937204 24937254 -159351408 + L2 LINE L2 3237 3270 -43 1644 156 27 34 chr4 24937254 24937549 -159351113 + AluSx SINE Alu 3 295 -17 198 267 0 144 chr4 24937549 24937588 -159351074 + L2 LINE L2 3270 3313 0 441 331 40 0 chr4 24938528 24938676 -159349986 - MER117 DNA MER1_type -43 154 1 218 254 17 17 chr4 24939182 24939241 -159349421 - L3 LINE CR1 -513 1064 1006 312 301 44 22 chr4 24939286 24939422 -159349240 + MIR3 SINE MIR 55 193 -15 1953 94 0 4 chr4 24940123 24940378 -159348284 + AluY SINE Alu 39 292 -19 219 204 0 54 chr4 24940881 24940974 -159347688 + A-rich Low_complexity Low_complexity 3 90 0 393 255 10 10 chr4 24941257 24941355 -159347307 - MIR SINE MIR -118 144 47 489 317 154 9 chr4 24943617 24943844 -159344818 + MIR SINE MIR 3 262 0 377 306 223 8 chr4 24944537 24944779 -159343883 - L2 LINE L2 0 3313 3020 214 273 73 0 chr4 24946796 24946851 -159341811 + MIR SINE MIR 94 152 -110 2144 117 3 19 chr4 24946903 24947219 -159341443 + AluSx SINE Alu 1 311 -1 23 0 0 0 chr4 24947758 24947781 -159340881 + AT_rich Low_complexity Low_complexity 1 23 0 279 308 119 53 chr4 24947935 24948162 -159340500 - MIR SINE MIR -12 250 9 201 344 86 20 chr4 24950357 24950508 -159338154 + MIR SINE MIR 7 167 -95 373 375 58 17 chr4 24950685 24950925 -159337737 - MIR SINE MIR -11 251 2 7318 46 3 0 chr4 24951145 24952803 -159335859 + L1PA6 LINE L1 4492 6153 -1 283 315 113 6 chr4 24953344 24953409 -159335253 + L1ME LINE L1 5516 5573 -548 252 59 0 0 chr4 24953409 24953443 -159335219 + (TG)n Simple_repeat Simple_repeat 1 34 0 283 315 113 6 chr4 24953443 24953704 -159334958 + L1ME LINE L1 5573 5877 -244 2443 58 0 0 chr4 24953811 24954105 -159334557 - AluY SINE Alu -17 294 1 874 183 22 79 chr4 24954354 24954583 -159334079 + MER20 DNA MER1_type 4 219 0 25 0 0 0 chr4 24954597 24954622 -159334040 + AT_rich Low_complexity Low_complexity 1 25 0 313 354 91 52 chr4 24954736 24955100 -159333562 - L2 LINE L2 -83 3189 2812 7396 147 16 16 chr4 24955265 24956532 -159332130 - Tigger1 DNA MER2_type 0 2418 1072 270 196 43 43 chr4 24956530 24956622 -159332040 - LTR30 LTR ERV1 -79 643 552 * 1452 144 0 0 chr4 24956649 24956878 -159331784 + Tigger1 DNA MER2_type 1634 1862 -556 6766 144 28 19 chr4 24956878 24958022 -159330640 - Tigger1 DNA MER2_type -1259 1159 6 194 311 14 40 chr4 24958654 24958728 -159329934 + L2 LINE L2 3201 3272 0 692 259 47 30 chr4 24958807 24959043 -159329619 - MIR SINE MIR -11 251 12 954 252 102 16 chr4 24959612 24959926 -159328736 + MER58B DNA MER1_type 1 341 0 830 219 39 6 chr4 24960018 24960196 -159328466 + MER5A DNA MER1_type 1 184 -5 392 311 132 20 chr4 24960319 24960485 -159328177 - MIR SINE MIR -62 146 3 2170 207 50 32 chr4 24960503 24960699 -159327963 + MER90 LTR ERV1 2 193 -382 2228 114 3 0 chr4 24960699 24960997 -159327665 - AluSp SINE Alu -14 299 1 2170 207 50 32 chr4 24960997 24961360 -159327302 + MER90 LTR ERV1 193 571 -4 190 340 0 0 chr4 24962271 24962321 -159326341 - L2 LINE L2 -20 3252 3203 396 361 21 82 chr4 24962495 24962786 -159325876 + L2 LINE L2 2993 3265 -7 251 253 84 21 chr4 24962814 24962909 -159325753 + L1MC5 LINE L1 7831 7931 -30 212 240 60 0 chr4 24963206 24963256 -159325406 + L2 LINE L2 2598 2650 -664 2524 56 0 0 chr4 24963256 24963562 -159325100 - AluY SINE Alu -5 306 1 220 287 56 98 chr4 24964018 24964161 -159324501 + L2 LINE L2 3155 3291 -22 312 362 33 20 chr4 24965367 24965519 -159323143 + MIR3 SINE MIR 6 159 -49 302 280 65 65 chr4 24969018 24969232 -159319430 + MIR SINE MIR 40 253 -9 260 283 0 147 chr4 24969183 24969381 -159319281 - MIR SINE MIR 0 262 94 * 242 344 102 8 chr4 24969423 24969551 -159319111 - L2 LINE L2 0 3272 3133 326 302 139 0 chr4 24969751 24969920 -159318742 + MIR SINE MIR 36 226 -36 477 182 114 0 chr4 24971003 24971091 -159317571 + FLAM_C SINE Alu 21 118 -25 444 318 35 12 chr4 24971326 24971499 -159317163 - MIR SINE MIR -35 227 51 391 314 73 65 chr4 24971513 24971583 -159317079 - MIR SINE MIR 0 262 194 2465 59 0 10 chr4 24971583 24971889 -159316773 + AluY SINE Alu 1 303 -8 391 314 73 65 chr4 24971889 24972066 -159316596 - MIR SINE MIR -68 194 13 1117 206 93 102 chr4 24972574 24973141 -159315521 + MER34B LTR ERV1 4 565 0 28 29 0 0 chr4 24973169 24973204 -159315458 + AT_rich Low_complexity Low_complexity 1 35 0 1762 172 40 0 chr4 24973554 24973850 -159314812 + AluJb SINE Alu 1 308 -4 2097 138 136 5 chr4 25024816 25025192 -159263470 + MSTA LTR MaLR 4 428 0 429 231 35 14 chr4 25025193 25025336 -159263326 - MER104 DNA Tc2 -8 172 27 266 301 66 66 chr4 25025348 25025544 -159263118 + L2 LINE L2 2524 2719 -595 281 277 102 97 chr4 25025668 25026029 -159262633 + L2 LINE L2 2949 3311 -2 22 0 0 0 chr4 25026318 25026340 -159262322 + AT_rich Low_complexity Low_complexity 1 22 0 220 346 0 0 chr4 25026882 25026960 -159261702 - L2 LINE L2 -5 3267 3190 218 467 0 0 chr4 25027077 25027182 -159261480 - MIR SINE MIR -60 148 44 1824 168 20 6 chr4 25027279 25027625 -159261037 - MLT1A1 LTR MaLR -11 354 4 434 293 24 8 chr4 25027640 25027763 -159260899 - MIR SINE MIR -106 156 32 267 277 50 10 chr4 25027843 25027944 -159260718 - MIR SINE MIR -4 258 154 198 0 0 0 chr4 25028089 25028111 -159260551 + (A)n Simple_repeat Simple_repeat 1 22 0 208 139 0 0 chr4 25029140 25029176 -159259486 + (A)n Simple_repeat Simple_repeat 1 36 0 573 314 13 31 chr4 25029270 25029499 -159259163 - MIR SINE MIR -20 242 18 469 235 25 43 chr4 25030700 25030863 -159257799 + MER69A DNA AcHobo 1 160 -17 251 114 23 0 chr4 25030983 25031027 -159257635 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 22 35 0 0 chr4 25031584 25031613 -159257049 + AT_rich Low_complexity Low_complexity 1 29 0 465 280 104 31 chr4 25031632 25031825 -159256837 - MIR SINE MIR -25 237 31 351 248 200 0 chr4 25031825 25031930 -159256732 - MER5B DNA MER1_type 0 178 53 25 0 0 0 chr4 25031930 25031955 -159256707 + GC_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr4 25032070 25032092 -159256570 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr4 25032463 25032487 -159256175 + GC_rich Low_complexity Low_complexity 1 24 0 1887 203 5 20 chr4 25033418 25033812 -159254850 + MER89 LTR ERV1 172 559 0 1842 163 73 16 chr4 25035343 25035529 -159253133 - MLT1B LTR MaLR 0 390 216 1818 174 29 27 chr4 25035529 25035903 -159252759 - THE1C LTR MaLR 0 375 1 1842 163 73 16 chr4 25035903 25036085 -159252577 - MLT1B LTR MaLR -174 216 1 322 265 84 14 chr4 25036702 25036847 -159251815 + MIR SINE MIR 68 232 -30 21 0 0 0 chr4 25037570 25037591 -159251071 + AT_rich Low_complexity Low_complexity 1 21 0 1916 121 28 17 chr4 25038041 25038331 -159250331 + AluY SINE Alu 1 293 -18 425 272 9 18 chr4 25038370 25038484 -159250178 - L2 LINE L2 -1 3312 3200 1503 193 39 89 chr4 25038553 25038747 -159249915 - Charlie1b DNA MER1_type -2240 521 319 1265 209 58 66 chr4 25038747 25039124 -159249538 + MLT1A2 LTR MaLR 1 374 0 1503 193 39 89 chr4 25039124 25039467 -159249195 - Charlie1b DNA MER1_type -2442 319 11 23625 45 1 3 chr4 25039568 25042609 -159246053 - L1P LINE L1 -3112 3034 1 1306 213 75 7 chr4 25043494 25043799 -159244863 + MLT1A1 LTR MaLR 40 365 0 514 27 14 14 chr4 25044880 25044953 -159243709 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 678 189 6 88 chr4 25046990 25047489 -159241173 - MER5A DNA MER1_type 0 189 44 2097 107 4 0 chr4 25047038 25047381 -159241281 - AluSg SINE Alu 0 344 1 246 254 85 107 chr4 25047381 25047509 -159241153 + MER5A DNA MER1_type 63 189 0 201 74 0 0 chr4 25048484 25048511 -159240151 + (A)n Simple_repeat Simple_repeat 1 27 0 294 310 46 0 chr4 25048567 25048654 -159240008 - MIR3 SINE MIR -41 167 77 536 297 55 6 chr4 25048875 25049057 -159239605 + L2 LINE L2 2887 3077 -195 394 268 16 0 chr4 25049131 25049254 -159239408 + LTR16C LTR ERVL 360 484 -7 462 286 50 0 chr4 25049421 25049540 -159239122 + L2 LINE L2 3188 3312 -1 275 268 22 87 chr4 25050386 25050524 -159238138 + L2 LINE L2 3185 3313 0 271 314 10 10 chr4 25050744 25050846 -159237816 + MIR SINE MIR 91 192 -70 2136 135 26 0 chr4 25050851 25051199 -159237463 + THE1B LTR MaLR 1 357 -7 303 273 7 101 chr4 25051251 25051390 -159237272 - MIR SINE MIR -60 148 23 448 291 108 19 chr4 25052038 25052196 -159236466 - MER5B DNA MER1_type -6 172 1 188 377 132 18 chr4 25052200 25052314 -159236348 + L2 LINE L2 2918 3044 -228 253 191 79 0 chr4 25052636 25052699 -159235963 + L1ME3A LINE L1 5594 5661 -501 297 300 0 0 chr4 25052702 25052792 -159235870 - Tigger5 DNA MER2_type -1 2322 2233 236 230 14 27 chr4 25052841 25052915 -159235747 - Tigger5 DNA MER2_type 0 2323 2251 1185 272 60 14 chr4 25052941 25053244 -159235418 + L1ME3A LINE L1 5660 5995 -175 1958 84 0 4 chr4 25053244 25053505 -159235157 + AluY SINE Alu 50 309 -2 1185 272 60 14 chr4 25053505 25053687 -159234975 + L1ME3A LINE L1 5995 6167 -3 26 30 0 0 chr4 25053948 25053981 -159234681 + AT_rich Low_complexity Low_complexity 1 33 0 271 260 30 0 chr4 25054331 25054431 -159234231 - MER94 DNA DNA -30 104 2 1858 123 40 53 chr4 25054594 25054896 -159233766 + AluSx SINE Alu 1 298 -14 2148 177 30 19 chr4 25055984 25056413 -159232249 + Tigger2a DNA MER2_type 1 434 0 498 325 37 0 chr4 25057613 25057801 -159230861 + MIR SINE MIR 28 222 -40 1853 131 0 11 chr4 25059489 25059749 -159228913 - AluSx SINE Alu -22 290 34 1991 203 49 14 chr4 25060181 25060669 -159227993 + MLT1D LTR MaLR 1 505 0 901 309 89 8 chr4 25061059 25061454 -159227208 + LTR16A LTR ERVL 24 450 0 677 309 19 9 chr4 25061761 25061995 -159226667 + MIR SINE MIR 17 252 -10 972 196 19 5 chr4 25062595 25062809 -159225853 - Tigger1 DNA MER2_type 0 2418 2202 817 156 0 7 chr4 25062798 25062933 -159225729 - Tigger1 DNA MER2_type -2261 157 24 * 2329 73 0 13 chr4 25063492 25063793 -159224869 + AluSg SINE Alu 13 309 -1 249 293 40 10 chr4 25064700 25064799 -159223863 + MLT2C1 LTR ERVL 44 145 -252 * 1918 218 72 29 chr4 25064741 25065265 -159223397 + MLT1E2 LTR MaLR 80 626 0 910 203 75 55 chr4 25065274 25065316 -159223346 + LTR37A LTR ERV1 19 59 -367 2253 96 0 23 chr4 25065316 25065618 -159223044 - AluSg1 SINE Alu -14 295 1 910 203 75 55 chr4 25065618 25065975 -159222687 + LTR37A LTR ERV1 59 426 0 404 250 74 7 chr4 25066527 25066675 -159221987 - MER69 DNA AcHobo 0 2526 2369 274 310 113 21 chr4 25066965 25067107 -159221555 - MER5A DNA MER1_type -34 155 1 2477 53 3 0 chr4 25067727 25068026 -159220636 + AluY SINE Alu 1 300 -11 296 216 21 31 chr4 25068520 25068617 -159220045 + (TATATG)n Simple_repeat Simple_repeat 3 98 0 733 249 141 42 chr4 25068634 25069060 -159219602 + LTR33 LTR ERVL 46 513 -8 2388 109 0 0 chr4 25069267 25069579 -159219083 + AluSq SINE Alu 1 312 -1 37 0 0 0 chr4 25070148 25070185 -159218477 + AT_rich Low_complexity Low_complexity 1 37 0 2399 74 0 0 chr4 25071867 25072165 -159216497 + AluY SINE Alu 1 298 -13 1131 252 41 21 chr4 25072610 25072900 -159215762 + MLT1F LTR MaLR 8 303 -239 439 250 129 0 chr4 25072903 25073027 -159215635 - MIR SINE MIR -121 141 2 22 0 0 0 chr4 25074614 25074636 -159214026 + AT_rich Low_complexity Low_complexity 1 22 0 1426 192 17 10 chr4 25075130 25075422 -159213240 + L1MB8 LINE L1 5613 5906 -278 8396 162 21 12 chr4 25075435 25076874 -159211788 + Tigger1 DNA MER2_type 14 1466 -952 5925 90 18 8 chr4 25076875 25077709 -159210953 + L1PA11 LINE L1 5333 6174 0 5008 139 43 31 chr4 25077711 25078335 -159210327 + Tigger1 DNA MER2_type 1465 2105 -313 2049 146 0 7 chr4 25078335 25078644 -159210018 + AluSx SINE Alu 1 307 -5 5008 139 43 31 chr4 25078644 25078950 -159209712 + Tigger1 DNA MER2_type 2105 2406 -12 2003 150 31 3 chr4 25079043 25079397 -159209265 - L1PB4 LINE L1 -9 6147 5784 214 291 12 12 chr4 25079402 25079488 -159209174 + (TA)n Simple_repeat Simple_repeat 1 86 0 619 77 121 0 chr4 25079489 25079580 -159209082 - L1PB4 LINE L1 -374 5782 5681 667 232 133 4 chr4 25079586 25079819 -159208843 + L1MB8 LINE L1 5915 6177 -1 214 260 0 0 chr4 25080326 25080376 -159208286 + L2 LINE L2 3264 3313 0 286 291 126 50 chr4 25080449 25080631 -159208031 - L2 LINE L2 -899 2415 2220 318 324 44 28 chr4 25081188 25081370 -159207292 + MIR SINE MIR 21 205 -57 321 45 101 0 chr4 25081371 25081460 -159207202 + (TA)n Simple_repeat Simple_repeat 2 99 0 24 77 0 0 chr4 25081515 25081567 -159207095 + AT_rich Low_complexity Low_complexity 1 52 0 200 83 0 28 chr4 25081638 25081674 -159206988 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 19462 46 5 5 chr4 25081674 25084924 -159203738 - L1PA3 LINE L1 -24 6131 2883 5124 200 14 38 chr4 25085024 25086583 -159202079 + L1MC1 LINE L1 4818 6333 0 188 35 35 0 chr4 25086987 25087016 -159201646 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 959 191 6 6 chr4 25087205 25087383 -159201279 + MLT1A2 LTR MaLR 1 178 -196 437 309 76 16 chr4 25088860 25089097 -159199565 + MIR SINE MIR 5 248 -14 1521 130 165 29 chr4 25089319 25089634 -159199028 + THE1C LTR MaLR 1 358 -17 245 62 0 0 chr4 25091321 25091353 -159197309 + MLT1J1 LTR MaLR 407 438 -8 2177 183 5 8 chr4 25092169 25092557 -159196105 + MLT1B LTR MaLR 4 390 0 205 325 89 16 chr4 25092576 25092699 -159195963 - L2 LINE L2 0 3272 3141 1590 177 115 65 chr4 25092770 25092928 -159195734 + MLT1C LTR MaLR 2 151 -316 1651 208 77 61 chr4 25092928 25092971 -159195691 - MLT2B1 LTR ERVL 0 520 479 306 73 0 0 chr4 25092971 25093012 -159195650 + (TG)n Simple_repeat Simple_repeat 2 42 0 1651 208 77 61 chr4 25093012 25093478 -159195184 - MLT2B1 LTR ERVL -41 479 3 1590 177 115 65 chr4 25093478 25093753 -159194909 + MLT1C LTR MaLR 151 457 -10 26 30 0 0 chr4 25094324 25094357 -159194305 + AT_rich Low_complexity Low_complexity 1 33 0 382 378 40 12 chr4 25094886 25095135 -159193527 + MIR SINE MIR 1 256 -6 360 0 0 0 chr4 25096183 25096223 -159192439 + (TA)n Simple_repeat Simple_repeat 1 40 0 207 0 0 0 chr4 25096520 25096543 -159192119 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 282 342 45 0 chr4 25096632 25096743 -159191919 - L3 LINE CR1 -172 1405 1290 7391 169 9 57 chr4 25096743 25098249 -159190413 + L1M1 LINE L1 10 1786 -5779 28 61 0 0 chr4 25098420 25098469 -159190193 + AT_rich Low_complexity Low_complexity 1 49 0 272 291 0 47 chr4 25098559 25098645 -159190017 - L3 LINE CR1 -486 1091 1010 602 346 134 17 chr4 25098648 25099334 -159189328 + L2 LINE L2 2552 3313 0 573 256 68 31 chr4 25099382 25099573 -159189089 + MIR SINE MIR 18 215 -47 464 301 68 41 chr4 25099625 25099844 -159188818 - L3 LINE CR1 -608 969 745 3141 234 114 24 chr4 25100188 25101121 -159187541 - L1MD2 LINE L1 -14 6345 5498 2451 87 0 0 chr4 25101121 25101431 -159187231 - AluY SINE Alu -1 310 1 3141 234 114 24 chr4 25101431 25102083 -159186579 - L1MD2 LINE L1 -861 5498 4600 30857 47 4 3 chr4 25102104 25106741 -159181921 - L1PA5 LINE L1 -5 6149 1506 1769 158 16 26 chr4 25107297 25107601 -159181061 + AluSx SINE Alu 1 301 -11 30 0 0 0 chr4 25107601 25107631 -159181031 + AT_rich Low_complexity Low_complexity 1 30 0 452 320 41 12 chr4 25107996 25108168 -159180494 + MIR SINE MIR 37 213 -49 22 70 0 0 chr4 25108230 25108273 -159180389 + AT_rich Low_complexity Low_complexity 1 43 0 1244 214 50 36 chr4 25108739 25109099 -159179563 - MLT1A1 LTR MaLR 0 365 1 2017 196 35 51 chr4 25110034 25110543 -159178119 + MLT1D LTR MaLR 5 505 0 569 278 100 39 chr4 25110585 25110815 -159177847 + MIR SINE MIR 19 262 0 211 357 24 0 chr4 25111175 25111259 -159177403 + L2 LINE L2 3219 3304 -9 21 0 0 0 chr4 25112120 25112141 -159176521 + AT_rich Low_complexity Low_complexity 1 21 0 423 0 0 0 chr4 25113323 25113370 -159175292 + (TCTA)n Simple_repeat Simple_repeat 1 47 0 226 194 32 0 chr4 25113675 25113737 -159174925 + CT-rich Low_complexity Low_complexity 1 64 0 841 261 101 62 chr4 25113763 25114249 -159174413 + MLT1D LTR MaLR 1 505 0 1348 212 36 39 chr4 25115497 25115860 -159172802 + MLT1A1 LTR MaLR 4 365 0 393 251 86 69 chr4 25116067 25116242 -159172420 - LTR16C LTR ERVL -4 487 310 23 0 0 0 chr4 25116867 25116890 -159171772 + AT_rich Low_complexity Low_complexity 1 23 0 368 261 8 0 chr4 25117299 25117418 -159171244 + CT-rich Low_complexity Low_complexity 1 120 0 2039 120 20 10 chr4 25117418 25117583 -159171079 - AluSx SINE Alu -8 304 142 405 0 0 0 chr4 25117583 25117628 -159171034 + (TG)n Simple_repeat Simple_repeat 2 46 0 1778 145 0 4 chr4 25117628 25117890 -159170772 - AluY SINE Alu -27 284 24 2039 120 20 10 chr4 25117890 25118024 -159170638 - AluSx SINE Alu -169 143 1 257 327 173 30 chr4 25118071 25118505 -159170157 + L2 LINE L2 1804 2299 -1015 248 333 56 61 chr4 25119025 25119205 -159169457 - L2 LINE L2 -227 3045 2867 825 275 28 73 chr4 25120951 25120992 -159167670 + L2 LINE L2 1430 1471 -1843 1179 210 59 65 chr4 25120992 25121364 -159167298 - MLT1A2 LTR MaLR -3 371 2 825 275 28 73 chr4 25121364 25121619 -159167043 + L2 LINE L2 1471 1704 -1610 2206 125 0 0 chr4 25121619 25121923 -159166739 + AluSx SINE Alu 1 304 -8 825 275 28 73 chr4 25121923 25122047 -159166615 + L2 LINE L2 1704 1832 -1482 1180 259 83 76 chr4 25122173 25122294 -159166368 - L1MC4a LINE L1 -1861 5947 5828 1820 128 55 43 chr4 25122294 25122623 -159166039 + MER1B DNA MER1_type 4 336 -1 1180 259 83 76 chr4 25122623 25123116 -159165546 - L1MC4a LINE L1 -1980 5828 5325 474 120 0 0 chr4 25123116 25123191 -159165471 + (TA)n Simple_repeat Simple_repeat 1 75 0 1180 259 83 76 chr4 25123191 25123263 -159165399 - L1MC4a LINE L1 -2483 5325 5255 316 342 26 8 chr4 25123730 25123847 -159164815 + L2 LINE L2 1823 1941 -1373 630 183 0 0 chr4 25123853 25123984 -159164678 + L1MA4 LINE L1 6169 6299 -1 482 281 32 86 chr4 25124309 25124530 -159164132 + MLT1J LTR MaLR 105 313 -198 457 285 55 10 chr4 25124557 25124757 -159163905 - MER58C DNA MER1_type 0 215 7 * 603 239 64 21 chr4 25124756 25124944 -159163718 + MLT1J LTR MaLR 314 509 -2 349 310 155 35 chr4 25125899 25126209 -159162453 + MLT1J2 LTR MaLR 60 406 -44 289 313 160 15 chr4 25126242 25126373 -159162289 - MIR SINE MIR -100 162 13 223 337 142 30 chr4 25126650 25126819 -159161843 + MIR SINE MIR 1 188 -74 296 248 38 57 chr4 25126868 25126973 -159161689 - L2 LINE L2 -1 3312 3210 644 273 6 16 chr4 25127044 25127227 -159161435 + L1ME2 LINE L1 37 217 -6179 3222 266 63 15 chr4 25127231 25128596 -159160066 + L1ME2 LINE L1 2958 4387 -1828 24 32 0 0 chr4 25128604 25128635 -159160027 + AT_rich Low_complexity Low_complexity 1 31 0 1045 232 62 36 chr4 25128637 25129025 -159159637 + L1ME2 LINE L1 4590 4987 -1228 43205 28 21 1 chr4 25129039 25135070 -159153592 + L1HS LINE L1 1 6155 0 234 0 0 0 chr4 25135098 25135124 -159153538 + (A)n Simple_repeat Simple_repeat 1 26 0 2361 232 80 36 chr4 25135126 25135417 -159153245 + L1ME2 LINE L1 4978 5255 -978 1348 204 18 87 chr4 25135417 25135809 -159152853 + MLT1A1 LTR MaLR 1 365 0 2361 232 80 36 chr4 25135809 25136305 -159152357 + L1ME2 LINE L1 5255 5728 -505 2411 93 0 0 chr4 25136305 25136616 -159152046 + AluSx SINE Alu 1 311 -1 2361 232 80 36 chr4 25136616 25137017 -159151645 + L1ME2 LINE L1 5728 6232 -1 31 0 0 0 chr4 25137320 25137351 -159151311 + AT_rich Low_complexity Low_complexity 1 31 0 1571 156 33 11 chr4 25138827 25139102 -159149560 - AluJo SINE Alu -29 283 3 405 0 0 0 chr4 25139310 25139355 -159149307 + (TG)n Simple_repeat Simple_repeat 2 46 0 372 289 152 19 chr4 25141267 25141478 -159147184 + MIR SINE MIR 18 256 -6 384 332 70 54 chr4 25141625 25141673 -159146989 - MIR SINE MIR -6 256 210 2102 109 0 14 chr4 25141673 25141981 -159146681 - AluSx SINE Alu 0 304 1 384 332 70 54 chr4 25141981 25142172 -159146490 - MIR SINE MIR -52 210 12 259 299 72 31 chr4 25142174 25142271 -159146391 + L2 LINE L2 3175 3275 -38 353 307 61 42 chr4 25142456 25142668 -159145994 - LTR67 LTR ERVL -4 553 338 476 309 24 58 chr4 25142738 25142945 -159145717 - LTR67 LTR ERVL -356 201 2 245 269 87 39 chr4 25142952 25143056 -159145606 - MIR SINE MIR -119 143 35 477 283 57 28 chr4 25143189 25143366 -159145296 - MIR3 SINE MIR -6 202 21 423 313 41 7 chr4 25143932 25144079 -159144583 + MIR SINE MIR 3 154 -108 2175 104 16 23 chr4 25144267 25144575 -159144087 + AluSx SINE Alu 1 306 -6 180 250 80 40 chr4 25144584 25144684 -159143978 - MIR SINE MIR -61 201 98 1185 208 128 17 chr4 25144686 25144974 -159143688 + MER67D LTR ERV1 1 320 -194 347 198 42 104 chr4 25144976 25145072 -159143590 - Tigger7 DNA MER2_type 0 2487 2398 2528 170 114 0 chr4 25145074 25145539 -159143123 - Tigger7 DNA MER2_type -1966 521 4 651 224 55 16 chr4 25145546 25145729 -159142933 + MER67D LTR ERV1 325 514 0 225 233 0 0 chr4 25145892 25145935 -159142727 + MIR3 SINE MIR 118 160 -48 23 0 0 0 chr4 25146038 25146061 -159142601 + AT_rich Low_complexity Low_complexity 1 23 0 1788 156 7 16 chr4 25146162 25146470 -159142192 - AluSq SINE Alu -8 305 1 184 341 89 32 chr4 25146760 25146883 -159141779 - L2 LINE L2 -2 3311 3182 1640 154 57 11 chr4 25147194 25147320 -159141342 + AluSx SINE Alu 1 120 -192 220 0 86 0 chr4 25147320 25147355 -159141307 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 1640 154 57 11 chr4 25147355 25147507 -159141155 + AluSx SINE Alu 120 292 -20 180 0 0 0 chr4 25147508 25147528 -159141134 + (TA)n Simple_repeat Simple_repeat 1 20 0 1710 170 20 3 chr4 25148465 25148765 -159139897 - AluJb SINE Alu -6 306 2 275 294 56 0 chr4 25149027 25149153 -159139509 + L1ME LINE L1 5651 5783 -338 370 213 7 26 chr4 25150305 25150460 -159138202 + (TA)n Simple_repeat Simple_repeat 1 152 0 201 292 11 101 chr4 25150753 25150842 -159137820 - L2 LINE L2 -182 3090 3010 234 105 0 0 chr4 25151146 25151184 -159137478 + (TCCA)n Simple_repeat Simple_repeat 1 38 0 329 75 19 0 chr4 25152069 25152122 -159136540 + (TTTCC)n Simple_repeat Simple_repeat 4 57 0 1224 148 0 37 chr4 25152128 25152344 -159136318 - L1PB4 LINE L1 -13 6143 5936 3062 163 57 39 chr4 25152393 25153109 -159135553 - L1MA8 LINE L1 -4 6287 5559 564 134 10 0 chr4 25153113 25153210 -159135452 - AluSg/x SINE Alu -2 310 213 829 134 22 8 chr4 25153210 25153344 -159135318 - L1MA8 LINE L1 -743 5569 5434 592 304 51 82 chr4 25153344 25153699 -159134963 + L2 LINE L2 2852 3190 -123 1016 208 47 24 chr4 25153699 25153954 -159134708 + MIR SINE MIR 2 262 0 592 304 51 82 chr4 25153954 25154072 -159134590 + L2 LINE L2 3190 3310 -3 614 233 0 6 chr4 25154998 25155174 -159133488 + CT-rich Low_complexity Low_complexity 3 177 0 213 220 0 20 chr4 25155219 25155269 -159133393 + MIR SINE MIR 116 164 -98 1625 174 34 17 chr4 25156295 25156589 -159132073 - AluJb SINE Alu -13 299 1 421 294 42 17 chr4 25157504 25157623 -159131039 + MIR SINE MIR 23 144 -118 21 0 0 0 chr4 25158113 25158134 -159130528 + AT_rich Low_complexity Low_complexity 1 21 0 363 330 40 28 chr4 25158393 25158569 -159130093 + L2 LINE L2 3122 3299 -14 453 331 50 25 chr4 25158586 25158828 -159129834 + MIR SINE MIR 14 261 -1 228 297 0 16 chr4 25160179 25160243 -159128419 - L2 LINE L2 -26 3246 3184 22 56 0 0 chr4 25162387 25162423 -159126239 + AT_rich Low_complexity Low_complexity 1 36 0 1464 146 13 86 chr4 25162438 25162565 -159126097 + AluJo SINE Alu 16 151 -161 351 0 0 0 chr4 25162565 25162604 -159126058 + (CTA)n Simple_repeat Simple_repeat 1 39 0 1464 146 13 86 chr4 25162604 25162778 -159125884 + AluJo SINE Alu 151 295 -17 2553 43 7 0 chr4 25163221 25163520 -159125142 - AluY SINE Alu -10 301 1 221 200 36 0 chr4 25164047 25164102 -159124560 + (TGAA)n Simple_repeat Simple_repeat 4 60 0 781 331 64 10 chr4 25164234 25164548 -159124114 + MLT1J1 LTR MaLR 96 426 -20 25 31 0 0 chr4 25165313 25165345 -159123317 + AT_rich Low_complexity Low_complexity 1 32 0 644 294 13 0 chr4 25166192 25166345 -159122317 + MER45A DNA AcHobo 1 155 -23 1500 225 115 27 chr4 25166453 25166974 -159121688 - L1ME3 LINE L1 -7 6155 5589 251 272 9 88 chr4 25168084 25168198 -159120464 - MIR SINE MIR -17 245 141 3203 52 13 0 chr4 25168720 25169358 -159119304 - L1PA5 LINE L1 -497 5657 5015 3029 44 0 0 chr4 25169358 25169719 -159118943 + L1PA5 LINE L1 5659 6019 -135 353 94 250 0 chr4 25169819 25169883 -159118779 + L1P5 LINE L1 5703 5782 -372 233 125 0 0 chr4 25169881 25169921 -159118741 + L1MC4 LINE L1 6664 6703 -1339 * 322 229 72 0 chr4 25169924 25170007 -159118655 + L1MC4 LINE L1 6615 6703 -1339 304 276 0 61 chr4 25169929 25170027 -159118635 - L1MC4 LINE L1 -1339 6703 6612 * 2311 113 14 11 chr4 25170028 25170399 -159118263 + L1PB3 LINE L1 5783 6154 0 25 0 0 0 chr4 25170399 25170424 -159118238 + AT_rich Low_complexity Low_complexity 1 25 0 383 247 2 6 chr4 25170526 25170630 -159118032 - MIR SINE MIR -41 167 65 2277 102 0 7 chr4 25171095 25171398 -159117264 - AluY SINE Alu -10 301 1 233 319 65 68 chr4 25171455 25171587 -159117075 - MIR SINE MIR -3 259 127 3563 150 64 0 chr4 25171587 25172199 -159116463 + L1PA16 LINE L1 5512 6162 -4 233 319 65 68 chr4 25172199 25172314 -159116348 - MIR SINE MIR -135 127 13 1046 343 47 15 chr4 25172504 25172909 -159115753 - MER115 DNA AcHobo -238 455 38 322 327 44 0 chr4 25173840 25173953 -159114709 + MIR SINE MIR 30 147 -61 242 158 0 0 chr4 25174389 25174427 -159114235 - L2 LINE L2 0 3272 3235 338 354 35 7 chr4 25175024 25175168 -159113494 - MIR SINE MIR -44 218 71 819 223 25 30 chr4 25175218 25175420 -159113242 - MIR SINE MIR -52 210 10 427 314 25 16 chr4 25176145 25176266 -159112396 + MIR3 SINE MIR 12 133 -75 605 285 15 35 chr4 25176309 25176509 -159112153 - MIR SINE MIR -64 198 3 257 278 78 0 chr4 25176947 25177062 -159111600 + L1ME4a LINE L1 5982 6105 -16 1843 174 3 0 chr4 25177430 25177741 -159110921 - AluJb SINE Alu 0 312 1 1991 129 23 54 chr4 25178316 25178703 -159109959 - THE1C LTR MaLR 0 375 1 2563 96 67 7 chr4 25178726 25179144 -159109518 - L1MA5A LINE L1 -4 6293 5851 377 39 0 19 chr4 25179197 25179249 -159109413 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 256 311 15 61 chr4 25179257 25179389 -159109273 + L2 LINE L2 3180 3305 -8 22 70 0 0 chr4 25180526 25180569 -159108093 + AT_rich Low_complexity Low_complexity 1 43 0 1851 146 42 39 chr4 25180897 25181232 -159107430 + MER1B DNA MER1_type 2 337 0 562 295 112 9 chr4 25181281 25181505 -159107157 - MIR SINE MIR -14 248 2 201 227 80 45 chr4 25181877 25181965 -159106697 - MIR SINE MIR -75 187 97 1677 184 45 14 chr4 25182116 25182470 -159106192 - MLT1A1 LTR MaLR 0 365 1 704 229 32 0 chr4 25182482 25182639 -159106023 + MER106B DNA MER1_type 896 1057 -2 213 65 0 0 chr4 25182857 25182888 -159105774 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 2218 111 0 0 chr4 25182912 25183201 -159105461 - AluSx SINE Alu -23 289 1 430 203 0 0 chr4 25183225 25183304 -159105358 - AluJ/FLAM SINE Alu -233 79 1 436 327 103 14 chr4 25183554 25183768 -159104894 + MIR SINE MIR 23 255 -7 1494 156 101 0 chr4 25185411 25185690 -159102972 - AluJo SINE Alu 0 305 1 432 370 22 6 chr4 25186073 25186254 -159102408 - MIR SINE MIR -29 233 50 583 294 71 5 chr4 25186594 25186791 -159101871 - MIR SINE MIR 0 262 53 206 286 0 0 chr4 25186813 25186869 -159101793 + MIR SINE MIR 192 247 -15 2205 101 3 0 chr4 25187587 25187914 -159100748 - AluSq SINE Alu 0 328 1 226 320 10 48 chr4 25188024 25188127 -159100535 + L2 LINE L2 3174 3272 0 34 72 0 0 chr4 25188578 25188647 -159100015 + AT_rich Low_complexity Low_complexity 1 69 0 309 315 51 115 chr4 25189894 25189988 -159098674 + MLT1K LTR MaLR 197 295 -293 1350 55 0 0 chr4 25189988 25190182 -159098480 + L1PA5 LINE L1 5972 6165 0 309 315 51 115 chr4 25190182 25190496 -159098166 + MLT1K LTR MaLR 295 580 -8 253 282 50 138 chr4 25190693 25190874 -159097788 + L2 LINE L2 3077 3241 -31 2296 129 8 19 chr4 25190906 25191285 -159097377 - THE1C LTR MaLR 0 375 1 214 279 0 16 chr4 25192517 25192578 -159096084 + MIR SINE MIR 2 61 -201 2161 204 56 31 chr4 25192586 25193071 -159095591 + MLT1D LTR MaLR 7 503 -2 533 296 57 0 chr4 25193098 25193257 -159095405 + MIR SINE MIR 95 262 0 183 42 0 0 chr4 25193379 25193403 -159095259 + (TG)n Simple_repeat Simple_repeat 2 25 0 1367 217 43 45 chr4 25193749 25194123 -159094539 - MLT1A2 LTR MaLR -1 373 1 1759 188 3 0 chr4 25194178 25194486 -159094176 - AluSq SINE Alu -4 309 1 1286 201 0 0 chr4 25194537 25194776 -159093886 + Tigger5 DNA MER2_type 2085 2323 0 1829 113 0 0 chr4 25194920 25195159 -159093503 - AluSx SINE Alu -73 239 1 1478 167 0 0 chr4 25195210 25195449 -159093213 + Tigger5 DNA MER2_type 2085 2323 0 333 246 0 0 chr4 25195772 25195841 -159092821 - MER94 DNA DNA -61 73 5 244 310 60 0 chr4 25196147 25196247 -159092415 - L3 LINE CR1 -2 1575 1470 297 352 16 0 chr4 25196260 25196385 -159092277 - MIR SINE MIR -16 246 120 327 219 0 0 chr4 25196436 25196509 -159092153 + FLAM_C SINE Alu 35 107 -26 419 168 13 47 chr4 25196509 25196658 -159092004 + GA-rich Low_complexity Low_complexity 1 144 0 323 295 47 31 chr4 25197112 25197241 -159091421 + MIR3 SINE MIR 75 205 -3 216 0 0 0 chr4 25197943 25197967 -159090695 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 274 292 44 44 chr4 25198009 25198122 -159090540 - L2 LINE L2 -18 3295 3183 416 241 26 25 chr4 25198172 25198384 -159090278 - MER5C DNA MER1_type 0 324 34 2103 136 128 8 chr4 25198385 25198767 -159089895 + MSTA LTR MaLR 1 428 0 1370 209 53 76 chr4 25200218 25200615 -159088047 + MLT1C LTR MaLR 6 392 -75 4443 78 15 29 chr4 25200615 25201273 -159087389 - L1PA10 LINE L1 -3 6165 5517 1370 209 53 76 chr4 25201273 25201348 -159087314 + MLT1C LTR MaLR 392 467 0 201 290 16 16 chr4 25202828 25202890 -159085772 - L2 LINE L2 -4 3309 3248 236 336 41 16 chr4 25203206 25203328 -159085334 - L2 LINE L2 -252 3061 2937 355 298 8 8 chr4 25203437 25203558 -159085104 - L2 LINE L2 -1357 1957 1837 186 44 44 44 chr4 25204068 25204113 -159084549 + (TATAA)n Simple_repeat Simple_repeat 5 49 0 315 112 112 0 chr4 25204177 25204338 -159084324 + (TA)n Simple_repeat Simple_repeat 2 180 0 453 92 113 0 chr4 25204358 25204645 -159084017 + (TA)n Simple_repeat Simple_repeat 1 319 0 335 108 105 6 chr4 25204663 25204938 -159083724 + (TA)n Simple_repeat Simple_repeat 1 302 0 1911 139 0 0 chr4 25204954 25205220 -159083442 - AluSx SINE Alu -46 266 1 351 173 0 0 chr4 25205224 25205305 -159083357 - Charlie4 DNA MER1_type -79 1882 1802 756 200 28 17 chr4 25205398 25205578 -159083084 - Charlie4 DNA MER1_type -1779 182 1 1079 291 96 20 chr4 25205595 25206055 -159082607 + L2 LINE L2 2810 3304 -9 879 149 0 8 chr4 25206286 25206420 -159082242 + AluJb SINE Alu 2 134 -178 1928 99 44 41 chr4 25207000 25207294 -159081368 + AluSg1 SINE Alu 1 295 -14 454 301 48 15 chr4 25207448 25207654 -159081008 - L2 LINE L2 0 3313 3101 17783 28 2 1 chr4 25207764 25210658 -159078004 + L1PA4 LINE L1 3251 6152 -3 397 294 15 77 chr4 25211114 25211451 -159077211 + L1ME4a LINE L1 5598 5913 -208 2464 68 3 3 chr4 25212155 25212462 -159076200 + AluY SINE Alu 1 307 -4 338 315 18 48 chr4 25212626 25212697 -159075965 + MIR SINE MIR 87 159 -103 1908 212 85 8 chr4 25212697 25213141 -159075521 + MLT2B1 LTR ERVL 3 488 -32 387 41 0 0 chr4 25213141 25213190 -159075472 + (TG)n Simple_repeat Simple_repeat 2 50 0 1908 212 85 8 chr4 25213190 25213226 -159075436 + MLT2B1 LTR ERVL 488 520 0 338 315 18 48 chr4 25213226 25213319 -159075343 + MIR SINE MIR 159 246 -16 180 351 26 0 chr4 25213787 25213864 -159074798 - L3 LINE CR1 -2 1575 1497 530 156 37 44 chr4 25214396 25214531 -159074131 - L1MA5 LINE L1 -1 6299 6166 25 51 0 0 chr4 25215157 25215196 -159073466 + AT_rich Low_complexity Low_complexity 1 39 0 289 363 76 6 chr4 25215320 25215491 -159073171 + MIR SINE MIR 21 203 -59 189 244 110 37 chr4 25216914 25216996 -159071666 - MIR3 SINE MIR -21 187 100 324 292 124 9 chr4 25217394 25217507 -159071155 - MIR3 SINE MIR -15 193 68 616 153 0 12 chr4 25217815 25217978 -159070684 + (TA)n Simple_repeat Simple_repeat 2 162 0 225 0 0 0 chr4 25218008 25218033 -159070629 + (TA)n Simple_repeat Simple_repeat 2 26 0 189 0 0 0 chr4 25218073 25218094 -159070568 + (TA)n Simple_repeat Simple_repeat 1 21 0 303 305 0 11 chr4 25218118 25218213 -159070449 - L1MC4 LINE L1 -1335 6707 6614 300 230 0 14 chr4 25218184 25218258 -159070404 - L1MCa LINE L1 -4358 2068 1996 * 425 263 101 43 chr4 25218990 25219199 -159069463 - MIR SINE MIR -21 241 21 204 97 0 0 chr4 25219486 25219517 -159069145 + (CATA)n Simple_repeat Simple_repeat 2 32 0 234 314 29 0 chr4 25219806 25219876 -159068786 + MIR SINE MIR 172 243 -19 261 180 34 0 chr4 25221140 25221229 -159067433 + (TA)n Simple_repeat Simple_repeat 2 93 0 329 335 13 13 chr4 25221275 25221427 -159067235 + L1MC/D LINE L1 5665 5816 -1992 3182 32 3 0 chr4 25221913 25222292 -159066370 + L1PA3 LINE L1 5771 6150 -5 2310 82 0 13 chr4 25222397 25222702 -159065960 - AluSc SINE Alu -8 301 1 362 269 8 34 chr4 25223173 25223292 -159065370 + MIR SINE MIR 102 217 -45 187 297 0 0 chr4 25223915 25223952 -159064710 + MER5B DNA MER1_type 5 41 -137 1674 214 36 17 chr4 25224022 25224436 -159064226 + L1MB5 LINE L1 5688 6109 -65 369 259 14 72 chr4 25224654 25224793 -159063869 + MER5A DNA MER1_type 37 167 -22 249 310 128 37 chr4 25224887 25225074 -159063588 - MIR SINE MIR -12 250 47 208 348 17 17 chr4 25225848 25225963 -159062699 + MIR SINE MIR 73 187 -75 264 383 113 0 chr4 25225991 25226132 -159062530 - L2 LINE L2 -6 3266 3110 730 335 80 17 chr4 25226146 25226558 -159062104 - L2 LINE L2 0 3313 2876 1312 167 20 82 chr4 25226579 25226885 -159061777 + AluJo SINE Alu 12 298 -14 610 310 59 31 chr4 25226885 25227172 -159061490 - L2 LINE L2 -481 2833 2539 430 287 28 35 chr4 25227214 25227357 -159061305 + L2 LINE L2 3172 3313 0 475 320 114 0 chr4 25227386 25227561 -159061101 - L2 LINE L2 -856 2458 2264 647 264 10 70 chr4 25227624 25227739 -159060923 + MER5A DNA MER1_type 1 100 -89 2247 118 0 6 chr4 25227739 25228052 -159060610 + AluSx SINE Alu 2 312 0 647 264 10 70 chr4 25228052 25228137 -159060525 + MER5A DNA MER1_type 100 189 0 226 338 42 0 chr4 25228541 25228612 -159060050 + L2 LINE L2 3240 3313 0 523 310 91 13 chr4 25229205 25229437 -159059225 - MIR SINE MIR 0 262 13 262 397 63 0 chr4 25229865 25229991 -159058671 - L2 LINE L2 -17 3255 3122 324 0 0 0 chr4 25230158 25230194 -159058468 + (TG)n Simple_repeat Simple_repeat 1 36 0 454 331 0 7 chr4 25230905 25231059 -159057603 - MER117 DNA MER1_type -42 155 3 267 375 29 0 chr4 25231068 25231172 -159057490 - MIR3 SINE MIR -54 154 48 782 386 41 16 chr4 25231870 25232520 -159056142 + L2 LINE L2 2394 3051 -221 692 322 47 41 chr4 25232530 25232996 -159055666 + LTR16C LTR ERVL 3 471 -20 480 291 44 34 chr4 25233051 25233257 -159055405 + L2 LINE L2 3106 3313 0 582 297 53 23 chr4 25233463 25233696 -159054966 - MIR SINE MIR -18 244 5 1272 184 73 35 chr4 25233939 25234227 -159054435 - AluJo SINE Alu -13 299 1 216 0 0 0 chr4 25234241 25234265 -159054397 + (TG)n Simple_repeat Simple_repeat 2 25 0 194 313 50 38 chr4 25234296 25234376 -159054286 - MIR SINE MIR -173 89 9 518 207 96 106 chr4 25234745 25234953 -159053709 + MIR SINE MIR 43 248 -14 1914 148 0 3 chr4 25235088 25235410 -159053252 + AluSx SINE Alu 1 321 0 207 344 75 47 chr4 25235537 25235749 -159052913 - L2 LINE L2 -429 2885 2668 503 275 109 44 chr4 25236221 25236450 -159052212 - MIR SINE MIR -13 249 6 192 284 49 74 chr4 25236751 25236832 -159051830 + MIR SINE MIR 5 83 -179 224 379 29 44 chr4 25236851 25237057 -159051605 - L2 LINE L2 -252 3020 2818 344 269 84 8 chr4 25237219 25237338 -159051324 + MIR SINE MIR 87 214 -48 5872 29 0 0 chr4 25237644 25238339 -159050323 - L1P LINE L1 -2017 4129 3435 282 392 15 38 chr4 25239069 25239332 -159049330 - L2 LINE L2 -198 3074 2818 1783 158 37 10 chr4 25239667 25239964 -159048698 - AluJb SINE Alu -4 308 4 1943 154 3 0 chr4 25240979 25241277 -159047385 + AluSx SINE Alu 3 301 -11 748 276 86 0 chr4 25242363 25242595 -159046067 + MIR SINE MIR 11 262 0 541 277 14 7 chr4 25242628 25242769 -159045893 - MIR SINE MIR 0 262 121 188 305 34 51 chr4 25243631 25243749 -159044913 + L2 LINE L2 2350 2465 -849 253 336 90 52 chr4 25244150 25244284 -159044378 + L2 LINE L2 3134 3272 0 326 314 50 14 chr4 25245413 25245553 -159043109 - MIR3 SINE MIR -40 168 24 229 291 126 39 chr4 25245834 25245961 -159042701 - MIR SINE MIR -77 185 48 1398 133 31 9 chr4 25246124 25246349 -159042313 + MER30 DNA MER1_type 1 230 0 816 121 0 0 chr4 25246507 25246623 -159042039 + MLT1C LTR MaLR 346 461 -6 872 127 0 22 chr4 25246641 25246775 -159041887 - AluSq/x SINE Alu -179 133 3 439 261 50 50 chr4 25246902 25247082 -159041580 + MLT1J LTR MaLR 1 180 -331 1135 260 130 84 chr4 25247425 25248473 -159040189 + HAL1 LINE L1 679 1823 -684 2371 114 35 0 chr4 25248473 25248840 -159039822 - L1PA13 LINE L1 -2 6161 5782 1135 260 130 84 chr4 25248840 25249350 -159039312 + HAL1 LINE L1 1823 2308 -199 419 113 38 38 chr4 25249388 25249468 -159039194 + MADE1 DNA Mariner 1 80 0 316 197 0 53 chr4 25249733 25249809 -159038853 - L1MC4 LINE L1 -1317 6725 6654 35 0 0 0 chr4 25249850 25249885 -159038777 + AT_rich Low_complexity Low_complexity 1 35 0 251 261 148 11 chr4 25249887 25249975 -159038687 - L2 LINE L2 0 3313 3214 254 206 88 69 chr4 25250017 25250119 -159038543 + MIR SINE MIR 89 192 -70 342 309 148 9 chr4 25250706 25250916 -159037746 + L2 LINE L2 2561 2799 -515 2204 127 0 3 chr4 25251352 25251660 -159037002 - AluSx SINE Alu -5 307 1 453 235 196 36 chr4 25252416 25252722 -159035940 + MER113 DNA MER1_type? 3 357 -164 354 23 0 0 chr4 25252725 25252768 -159035894 + (TG)n Simple_repeat Simple_repeat 2 44 0 1309 244 71 25 chr4 25253179 25253618 -159035044 + L1MB7 LINE L1 5715 6173 -11 1249 45 0 0 chr4 25253922 25254097 -159034565 + L1PA4 LINE L1 5992 6166 0 2557 62 0 0 chr4 25254204 25254508 -159034154 + AluY SINE Alu 1 304 -7 483 291 128 45 chr4 25254733 25255007 -159033655 - LTR16A1 LTR ERVL 0 457 134 348 24 0 0 chr4 25255007 25255048 -159033614 + (TG)n Simple_repeat Simple_repeat 2 42 0 483 291 128 45 chr4 25255048 25255195 -159033467 - LTR16A1 LTR ERVL -323 134 1 211 354 13 13 chr4 25255202 25255281 -159033381 - MIR SINE MIR -166 96 18 26 0 0 0 chr4 25255368 25255394 -159033268 + AT_rich Low_complexity Low_complexity 1 26 0 1898 148 0 39 chr4 25255819 25256130 -159032532 + AluSx SINE Alu 1 299 -13 333 307 31 0 chr4 25257225 25257352 -159031310 + MER103 DNA DNA 33 163 -3 470 299 20 7 chr4 25257740 25257887 -159030775 - MIR SINE MIR -36 226 78 801 310 37 0 chr4 25258755 25258997 -159029665 - MIR SINE MIR 0 262 12 886 157 54 6 chr4 25259042 25259208 -159029454 - L1PA15 LINE L1 -198 5967 5794 1416 169 33 0 chr4 25259430 25259703 -159028959 - L1MA3 LINE L1 0 6305 6024 426 282 88 28 chr4 25261161 25261342 -159027320 - MIR SINE MIR -36 226 35 2218 69 3 21 chr4 25261840 25262223 -159026439 + AluY SINE Alu 1 378 0 519 337 78 24 chr4 25262792 25263124 -159025538 + L2 LINE L2 1203 1552 -1762 251 267 107 0 chr4 25263129 25263204 -159025458 + L2 LINE L2 3214 3296 -17 258 32 0 0 chr4 25263210 25263241 -159025421 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 365 329 28 35 chr4 25263524 25263667 -159024995 - MIR3 SINE MIR -65 143 2 419 244 10 129 chr4 25263965 25264166 -159024496 - MER69A DNA AcHobo 0 177 1 357 355 60 32 chr4 25264196 25264444 -159024218 + MIR SINE MIR 8 262 0 437 296 52 5 chr4 25264952 25265087 -159023575 + MIR3 SINE MIR 68 189 -19 645 293 107 34 chr4 25265680 25266182 -159022480 + L2 LINE L2 2738 3288 -25 288 0 0 0 chr4 25266191 25266223 -159022439 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 358 295 21 0 chr4 25266300 25266395 -159022267 + L2 LINE L2 3210 3306 -7 587 322 17 30 chr4 25266738 25266974 -159021688 - MIR SINE MIR -25 237 5 210 171 0 0 chr4 25267235 25267276 -159021386 + (TATG)n Simple_repeat Simple_repeat 2 42 0 195 100 0 0 chr4 25267298 25267328 -159021334 + (TG)n Simple_repeat Simple_repeat 2 31 0 210 71 0 0 chr4 25267368 25267396 -159021266 + (TA)n Simple_repeat Simple_repeat 2 29 0 283 260 110 0 chr4 25267835 25267908 -159020754 + MIR SINE MIR 64 144 -64 303 275 22 11 chr4 25268266 25268357 -159020305 + MIR SINE MIR 57 148 -114 493 299 38 13 chr4 25269238 25269395 -159019267 + MIR SINE MIR 35 195 -67 31 44 0 0 chr4 25269471 25269516 -159019146 + AT_rich Low_complexity Low_complexity 1 45 0 185 361 16 0 chr4 25269538 25269599 -159019063 - MIR SINE MIR -154 108 47 349 319 98 18 chr4 25271126 25271289 -159017373 - MIR3 SINE MIR -11 197 22 806 76 8 0 chr4 25274303 25274422 -159014240 + (GA)n Simple_repeat Simple_repeat 1 120 0 654 229 129 0 chr4 25275524 25275694 -159012968 + MIR SINE MIR 2 193 -69 320 324 190 0 chr4 25276324 25276503 -159012159 - MIR SINE MIR 0 262 50 862 204 0 0 chr4 25276667 25276814 -159011848 - AluJb SINE Alu -30 282 136 2190 107 3 7 chr4 25277094 25277393 -159011269 - AluSp SINE Alu -14 299 2 763 270 98 65 chr4 25277549 25277916 -159010746 + L2 LINE L2 2933 3311 -2 306 313 94 10 chr4 25278435 25278599 -159010063 + MIR SINE MIR 23 206 -56 187 348 0 14 chr4 25278701 25278770 -159009892 - MIR SINE MIR -115 147 80 273 29 0 0 chr4 25278978 25279012 -159009650 + (TG)n Simple_repeat Simple_repeat 2 35 0 452 164 77 0 chr4 25279653 25279757 -159008905 + L1MA2 LINE L1 6193 6304 0 471 314 100 9 chr4 25279819 25280029 -159008633 - MIR SINE MIR -1 261 33 1936 145 0 20 chr4 25280305 25280608 -159008054 - AluSx SINE Alu -15 297 1 2219 101 10 0 chr4 25280892 25281198 -159007464 - AluY SINE Alu 0 311 3 303 270 113 5 chr4 25281258 25281416 -159007246 + MIR SINE MIR 2 262 0 349 275 69 46 chr4 25281419 25281550 -159007112 - MIR SINE MIR -13 249 116 2222 94 0 0 chr4 25281700 25281977 -159006685 + AluSc SINE Alu 20 296 -13 422 277 38 22 chr4 25282547 25282731 -159005931 - MER5A DNA MER1_type -2 187 1 2265 220 77 58 chr4 25284129 25284765 -159003897 - MLT1E1 LTR MaLR -6 648 1 304 332 121 15 chr4 25285300 25285434 -159003228 + MIR SINE MIR 43 206 -56 2114 183 47 19 chr4 25285434 25285856 -159002806 + Tigger2a DNA MER2_type 1 434 0 304 332 121 15 chr4 25285856 25285920 -159002742 + MIR SINE MIR 206 262 0 207 400 11 0 chr4 25285934 25286024 -159002638 + L2 LINE L2 3169 3259 -13 347 377 43 56 chr4 25286310 25286615 -159002047 + L2 LINE L2 2970 3270 -2 2267 107 72 17 chr4 25287949 25288294 -159000368 + THE1B LTR MaLR 1 364 0 449 276 39 55 chr4 25290078 25290332 -158998330 - MER112 DNA MER1_type -3 253 4 268 267 17 0 chr4 25290835 25290895 -158997767 - MER96 DNA MER1_type? -24 151 91 2002 149 20 0 chr4 25290962 25291263 -158997399 + AluSx SINE Alu 1 307 -5 183 381 64 20 chr4 25291510 25291759 -158996903 + L3 LINE CR1 1065 1324 -253 273 194 11 21 chr4 25291908 25292001 -158996661 + GA-rich Low_complexity Low_complexity 4 95 0 886 178 7 7 chr4 25292018 25292457 -158996205 + GA-rich Low_complexity Low_complexity 1 439 0 258 32 0 0 chr4 25293418 25293449 -158995213 + (TA)n Simple_repeat Simple_repeat 2 32 0 5635 155 28 10 chr4 25293449 25295387 -158993275 - L1MA3 LINE L1 -41 7683 5709 14969 155 23 30 chr4 25295389 25299275 -158989387 - L1MA3 LINE L1 -2506 5059 1186 302 349 83 0 chr4 25299927 25300036 -158988626 - L2 LINE L2 -219 3053 2936 334 295 26 0 chr4 25301851 25301929 -158986733 - L2 LINE L2 -2 3270 3191 274 405 98 24 chr4 25301946 25302242 -158986420 + L2 LINE L2 2932 3249 -23 745 340 133 26 chr4 25302622 25303366 -158985296 + L2 LINE L2 2211 3032 -240 207 364 71 36 chr4 25303481 25303621 -158985041 + L2 LINE L2 3118 3262 -10 416 318 151 11 chr4 25304396 25304575 -158984087 + MIR SINE MIR 7 210 -52 1889 251 38 0 chr4 25304769 25305299 -158983363 - L1MB7 LINE L1 0 6184 5635 200 349 24 32 chr4 25305446 25305572 -158983090 + MIR3 SINE MIR 53 177 -31 318 335 45 13 chr4 25305901 25306056 -158982606 - MARNA DNA Mariner -40 546 387 451 303 42 48 chr4 25306355 25306811 -158981851 - L1ME3A LINE L1 -248 5922 5470 437 298 24 16 chr4 25306976 25307100 -158981562 + MIR3 SINE MIR 82 206 -2 269 250 0 0 chr4 25307354 25307418 -158981244 + GA-rich Low_complexity Low_complexity 6 69 0 379 312 122 34 chr4 25307506 25307833 -158980829 - MARNA DNA Mariner -221 365 10 231 357 10 31 chr4 25308018 25308116 -158980546 + MIR SINE MIR 12 107 -155 378 337 87 22 chr4 25308132 25308408 -158980254 - MLT1J LTR MaLR -8 503 210 1093 52 0 0 chr4 25308427 25308561 -158980101 + AluY SINE Alu 171 304 -7 1062 181 0 0 chr4 25308732 25308903 -158979759 + AluSg/x SINE Alu 135 305 -7 28 29 0 0 chr4 25308985 25309020 -158979642 + AT_rich Low_complexity Low_complexity 1 35 0 191 188 104 0 chr4 25310313 25310361 -158978301 - MIR SINE MIR -101 161 109 1090 241 101 19 chr4 25311215 25311592 -158977070 + MLT1C LTR MaLR 59 466 -1 231 279 156 34 chr4 25312654 25312833 -158975829 - MIR SINE MIR -42 220 20 239 343 139 7 chr4 25313903 25314040 -158974622 - MER5A DNA MER1_type 0 189 35 326 217 46 105 chr4 25314093 25314245 -158974417 - MIR SINE MIR -20 242 100 308 271 18 118 chr4 25314910 25315139 -158973523 - MIR SINE MIR -36 226 21 2080 195 131 37 chr4 25315232 25315750 -158972912 + MLT1F1 LTR MaLR 1 567 0 38 51 0 0 chr4 25316342 25316401 -158972261 + AT_rich Low_complexity Low_complexity 1 59 0 336 124 57 0 chr4 25316416 25316521 -158972141 + (TA)n Simple_repeat Simple_repeat 2 112 0 363 279 0 18 chr4 25317847 25317958 -158970704 - MLT1J LTR MaLR -458 109 1 269 288 13 115 chr4 25318051 25318277 -158970385 + MIR SINE MIR 21 223 -39 344 244 25 144 chr4 25319112 25319313 -158969349 + MER69A DNA AcHobo 1 177 0 379 324 28 35 chr4 25319611 25319756 -158968906 + MIR3 SINE MIR 2 145 -63 258 32 0 0 chr4 25320037 25320068 -158968594 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 217 326 11 34 chr4 25320157 25320246 -158968416 - L2 LINE L2 -1762 1552 1466 38 51 0 0 chr4 25320418 25320477 -158968185 + AT_rich Low_complexity Low_complexity 1 59 0 211 122 41 0 chr4 25320492 25320541 -158968121 + (TA)n Simple_repeat Simple_repeat 1 51 0 448 204 292 15 chr4 25320885 25321022 -158967640 - MER5A DNA MER1_type 0 189 15 26 0 0 0 chr4 25321196 25321222 -158967440 + AT_rich Low_complexity Low_complexity 1 26 0 253 315 33 22 chr4 25321232 25321324 -158967338 + MIR SINE MIR 8 100 -162 1103 280 113 25 chr4 25321334 25321805 -158966857 - LTR33A LTR ERVL -11 512 1 204 277 15 0 chr4 25321874 25321939 -158966723 + MIR SINE MIR 166 231 -31 457 339 96 21 chr4 25323270 25323509 -158965153 + MIR SINE MIR 6 262 0 22 35 0 0 chr4 25324316 25324345 -158964317 + AT_rich Low_complexity Low_complexity 1 29 0 1951 151 7 57 chr4 25325393 25325448 -158963214 + MLT1B LTR MaLR 1 57 -333 2267 131 28 11 chr4 25325448 25325806 -158962856 + THE1B LTR MaLR 1 364 0 1951 151 7 57 chr4 25325806 25326155 -158962507 + MLT1B LTR MaLR 57 385 -5 35784 89 6 10 chr4 25326547 25332720 -158955942 + L1PA6 LINE L1 11 6154 0 514 159 80 0 chr4 25332922 25333034 -158955628 + MLT2B2 LTR ERVL 1 121 -394 595 131 0 10 chr4 25333034 25333133 -158955529 + MER4A LTR ERV1 1 98 -566 1619 119 191 72 chr4 25333133 25333494 -158955168 + MER4A LTR ERV1 261 664 0 647 237 65 40 chr4 25333494 25333801 -158954861 + MLT2B2 LTR ERVL 117 474 -41 183 162 0 0 chr4 25334403 25334440 -158954222 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 22 35 0 0 chr4 25334690 25334719 -158953943 + AT_rich Low_complexity Low_complexity 1 29 0 273 57 0 0 chr4 25335410 25335445 -158953217 + (CAT)n Simple_repeat Simple_repeat 2 36 0 472 329 103 13 chr4 25335549 25335783 -158952879 + MIR SINE MIR 8 262 0 339 270 75 52 chr4 25336822 25336996 -158951666 + MIR SINE MIR 12 189 -73 1710 194 90 52 chr4 25387441 25387940 -158900722 - L1MB8 LINE L1 0 6178 5661 1655 191 20 7 chr4 25387943 25388236 -158900426 - AluJb SINE Alu -14 298 2 5668 58 1 3 chr4 25388261 25388983 -158899679 - L1PA5 LINE L1 -4 6150 5430 440 319 30 24 chr4 25389085 25389254 -158899408 - MIR SINE MIR -77 185 16 208 261 0 0 chr4 25390326 25390372 -158898290 - L2 LINE L2 -4 3309 3264 2031 125 31 0 chr4 25391260 25391609 -158897053 + AluSx SINE Alu 7 312 0 281 174 14 0 chr4 25392808 25392877 -158895785 + GA-rich Low_complexity Low_complexity 2 71 0 1353 193 37 84 chr4 25392920 25393303 -158895359 + MLT1A1 LTR MaLR 1 365 0 196 313 16 16 chr4 25394102 25394166 -158894496 + MIR3 SINE MIR 12 75 -133 189 0 0 0 chr4 25394289 25394310 -158894352 + (CA)n Simple_repeat Simple_repeat 2 22 0 711 324 36 8 chr4 25394471 25394721 -158893941 - MIR SINE MIR -3 259 3 414 196 0 0 chr4 25394966 25395063 -158893599 + (TCCA)n Simple_repeat Simple_repeat 2 98 0 442 339 109 9 chr4 25395074 25395304 -158893358 + MIR SINE MIR 8 260 -2 797 209 6 29 chr4 25395482 25395654 -158893008 + AluJb SINE Alu 121 288 -24 408 325 88 31 chr4 25395675 25395869 -158892793 - MIR SINE MIR -13 249 45 2354 71 0 19 chr4 25395870 25396178 -158892484 - AluY SINE Alu -9 302 1 851 238 20 139 chr4 25396355 25396843 -158891819 - L2 LINE L2 0 3313 2884 459 0 0 0 chr4 25396852 25396903 -158891759 + (TA)n Simple_repeat Simple_repeat 1 51 0 288 0 0 0 chr4 25396902 25396934 -158891728 + (CA)n Simple_repeat Simple_repeat 2 33 0 * 180 0 0 0 chr4 25396934 25396954 -158891708 + (TG)n Simple_repeat Simple_repeat 2 21 0 299 304 22 0 chr4 25396967 25397059 -158891603 - L2 LINE L2 -1670 1644 1551 222 317 83 41 chr4 25397145 25397290 -158891372 - L2 LINE L2 -469 2845 2695 460 326 102 14 chr4 25397491 25397706 -158890956 + MIR SINE MIR 29 262 0 480 93 0 0 chr4 25398403 25398478 -158890184 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 203 182 0 0 chr4 25398481 25398514 -158890148 + (TATATG)n Simple_repeat Simple_repeat 3 35 0 572 174 0 20 chr4 25399175 25399273 -158889389 + AluJo SINE Alu 87 182 -130 1946 131 7 4 chr4 25399373 25399648 -158889014 - AluSq SINE Alu -37 276 1 2057 136 27 38 chr4 25399828 25400196 -158888466 - THE1B LTR MaLR 0 364 1 505 256 33 60 chr4 25400959 25401174 -158887488 + MIR SINE MIR 41 249 -13 2394 66 3 7 chr4 25401207 25401510 -158887152 - AluY SINE Alu -9 302 1 190 295 26 51 chr4 25401931 25402009 -158886653 + L2 LINE L2 2746 2821 -493 286 389 11 32 chr4 25402045 25402230 -158886432 + L2 LINE L2 2873 3053 -219 940 255 62 0 chr4 25404878 25405121 -158883541 + L2 LINE L2 2509 2766 -548 184 277 0 21 chr4 25405704 25405751 -158882911 - MIR SINE MIR -99 163 118 462 114 0 0 chr4 25406074 25406144 -158882518 + (GA)n Simple_repeat Simple_repeat 1 70 0 180 0 0 0 chr4 25406483 25406503 -158882159 + (CA)n Simple_repeat Simple_repeat 2 21 0 524 331 77 15 chr4 25407748 25408020 -158880642 - L2 LINE L2 -337 2977 2689 260 177 210 0 chr4 25408472 25408534 -158880128 - L2 LINE L2 -4 3309 3235 2141 128 20 51 chr4 25408545 25408937 -158879725 + MLT1B LTR MaLR 11 390 0 741 297 72 70 chr4 25409309 25410051 -158878611 + L2 LINE L2 2576 3311 -2 400 350 47 43 chr4 25411062 25411319 -158877343 + MIR SINE MIR 5 262 0 219 308 82 27 chr4 25412178 25412324 -158876338 - L2 LINE L2 0 3313 3160 375 321 19 0 chr4 25413290 25413396 -158875266 + MER81 DNA DNA 6 113 -1 229 145 65 0 chr4 25413876 25413938 -158874724 + (TA)n Simple_repeat Simple_repeat 1 66 0 5781 60 0 2 chr4 25414137 25414938 -158873724 - L1P2 LINE L1 -708 5446 4647 1873 176 6 0 chr4 25414942 25415288 -158873374 - L1M4 LINE L1 -530 5654 5307 197 388 52 0 chr4 25415949 25416065 -158872597 - L2 LINE L2 -1 3271 3150 196 308 88 22 chr4 25416070 25416161 -158872501 + L2 LINE L2 3136 3232 -40 268 324 0 0 chr4 25418509 25418577 -158870085 + MLT1K LTR MaLR 144 211 -377 28 61 0 0 chr4 25419117 25419166 -158869496 + AT_rich Low_complexity Low_complexity 1 49 0 286 250 22 11 chr4 25419666 25419758 -158868904 + MER34 LTR ERV1 450 542 0 25 31 0 0 chr4 25419774 25419806 -158868856 + AT_rich Low_complexity Low_complexity 1 32 0 210 91 0 0 chr4 25419867 25419900 -158868762 + (CAT)n Simple_repeat Simple_repeat 3 35 0 314 281 0 20 chr4 25420150 25420303 -158868359 + (TA)n Simple_repeat Simple_repeat 1 150 0 217 195 0 0 chr4 25420356 25420397 -158868265 - MIR SINE MIR -96 166 126 2205 98 20 0 chr4 25420402 25420697 -158867965 + AluSx SINE Alu 1 301 -11 1275 246 93 12 chr4 25420791 25421124 -158867538 + MLT1D LTR MaLR 144 503 -2 1061 110 0 0 chr4 25421531 25421676 -158866986 + L1PA10 LINE L1 6009 6153 -15 25 31 0 0 chr4 25421755 25421787 -158866875 + AT_rich Low_complexity Low_complexity 1 32 0 189 315 14 14 chr4 25422761 25422834 -158865828 - MIR3 SINE MIR -15 193 121 778 296 106 48 chr4 25423001 25423522 -158865140 + MLT1K LTR MaLR 10 560 -28 415 113 0 0 chr4 25423535 25423597 -158865065 - MER53 DNA DNA 0 189 128 940 116 0 0 chr4 25423598 25423727 -158864935 - AluSg/x SINE Alu -15 297 169 721 102 22 15 chr4 25424406 25424543 -158864119 + (TTCTC)n Simple_repeat Simple_repeat 1 138 0 308 207 306 0 chr4 25424697 25424808 -158863854 - MIR3 SINE MIR -14 194 50 1862 108 4 0 chr4 25424823 25425072 -158863590 + AluSq SINE Alu 7 256 -57 872 310 182 23 chr4 25426775 25427433 -158861229 + L2 LINE L2 1413 2175 -1139 818 312 112 36 chr4 25427434 25427775 -158860887 + L2 LINE L2 2508 2822 -491 1435 193 2 98 chr4 25427775 25428174 -158860488 - MLT1A1 LTR MaLR -3 362 2 818 312 112 36 chr4 25428174 25428564 -158860098 + L2 LINE L2 2822 3309 -4 2365 146 29 43 chr4 25429042 25429534 -158859128 + MER31A LTR ERV1 1 485 0 187 374 12 0 chr4 25429749 25429832 -158858830 + MIR SINE MIR 178 261 -1 2307 106 3 0 chr4 25429969 25430280 -158858382 - AluSp SINE Alu -1 312 1 2472 229 72 15 chr4 25430551 25431222 -158857440 + Charlie1 DNA MER1_type 1496 2204 -557 753 337 106 18 chr4 25431249 25431685 -158856977 + L2 LINE L2 2840 3313 0 269 357 62 0 chr4 25431718 25431830 -158856832 - MIR SINE MIR -138 124 6 318 247 144 46 chr4 25431959 25432222 -158856440 - LTR37A LTR ERV1 -78 348 60 529 192 42 0 chr4 25433087 25433207 -158855455 + Charlie5 DNA MER1_type 4 128 -2484 476 225 74 48 chr4 25433210 25433238 -158855424 + Charlie5 DNA MER1_type 2243 2269 -355 1479 158 59 49 chr4 25433238 25433542 -158855120 - AluJo SINE Alu 0 312 6 476 225 74 48 chr4 25433542 25433784 -158854878 + Charlie5 DNA MER1_type 2269 2520 -104 184 231 0 0 chr4 25433795 25433834 -158854828 - L2 LINE L2 0 3272 3234 1777 263 62 8 chr4 25434397 25434933 -158853729 + MLT1F1 LTR MaLR 1 565 -2 1459 184 0 72 chr4 25435678 25435998 -158852664 + AluJb SINE Alu 1 297 -15 444 238 16 33 chr4 25437595 25437717 -158850945 + MLT1K LTR MaLR 453 572 -16 255 304 120 32 chr4 25437878 25438003 -158850659 + L2 LINE L2 3137 3272 0 644 307 139 12 chr4 25438248 25438580 -158850082 - L2 LINE L2 0 3313 2940 3265 172 24 74 chr4 25438580 25439087 -158849575 + L1MB1 LINE L1 5365 5819 -349 2100 117 15 6 chr4 25439087 25439420 -158849242 - L1MA3 LINE L1 -2 6303 5968 3265 172 24 74 chr4 25439420 25439707 -158848955 + L1MB1 LINE L1 5819 6119 -49 1743 134 0 38 chr4 25439716 25439977 -158848685 + AluSx SINE Alu 35 285 -27 278 217 121 97 chr4 25440078 25440285 -158848377 - L2 LINE L2 -374 2940 2729 228 137 0 0 chr4 25441547 25441598 -158847064 + (TG)n Simple_repeat Simple_repeat 1 51 0 183 114 0 0 chr4 25441656 25441691 -158846971 + (A)n Simple_repeat Simple_repeat 1 35 0 213 39 0 0 chr4 25442436 25442462 -158846200 + (TC)n Simple_repeat Simple_repeat 2 27 0 1087 182 0 0 chr4 25442620 25442796 -158845866 + AluSg/x SINE Alu 134 309 -3 291 114 0 0 chr4 25443627 25443671 -158844991 + (ATG)n Simple_repeat Simple_repeat 2 45 0 24 91 0 0 chr4 25443776 25443842 -158844820 + AT_rich Low_complexity Low_complexity 1 66 0 376 304 76 79 chr4 25444558 25444874 -158843788 + L2 LINE L2 2551 2865 -449 5394 147 48 5 chr4 25444952 25446124 -158842538 + L1MA9 LINE L1 5027 6249 -63 2167 92 3 16 chr4 25446469 25446772 -158841890 - AluSx SINE Alu -13 299 1 339 96 0 0 chr4 25446922 25446974 -158841688 + (TG)n Simple_repeat Simple_repeat 1 52 0 1492 181 7 0 chr4 25448056 25448333 -158840329 - L1MC3 LINE L1 -1160 6625 6347 262 313 70 9 chr4 25449093 25449208 -158839454 + L2 LINE L2 3150 3271 -1 27 62 0 0 chr4 25450045 25450093 -158838569 + AT_rich Low_complexity Low_complexity 1 48 0 233 286 286 9 chr4 25450835 25450940 -158837722 - L2 LINE L2 -259 3054 2921 374 299 186 33 chr4 25451051 25451325 -158837337 + MLT1J2 LTR MaLR 1 316 -134 1851 154 17 3 chr4 25451325 25451617 -158837045 - AluJo SINE Alu -16 296 1 1636 178 13 30 chr4 25452170 25452468 -158836194 - AluJo SINE Alu -19 293 1 308 313 97 23 chr4 25453924 25454100 -158834562 - MIR SINE MIR -26 236 48 22 0 0 0 chr4 25454260 25454282 -158834380 + AT_rich Low_complexity Low_complexity 1 22 0 2106 118 10 14 chr4 25454438 25454734 -158833928 + AluSg SINE Alu 2 296 -14 22 0 0 0 chr4 25454817 25454839 -158833823 + AT_rich Low_complexity Low_complexity 1 22 0 751 263 99 33 chr4 25455018 25455364 -158833298 + LTR41 LTR ERVL 3 438 -335 331 298 88 23 chr4 25455799 25455970 -158832692 + MER5A DNA MER1_type 7 188 -1 * 440 295 58 13 chr4 25455826 25455982 -158832680 - MER5A DNA MER1_type -23 166 4 181 234 21 0 chr4 25456262 25456309 -158832353 + L2 LINE L2 542 589 -2725 2268 128 6 6 chr4 25456569 25456906 -158831756 + MER1B DNA MER1_type 1 337 0 347 312 36 0 chr4 25456968 25457093 -158831569 + MIR SINE MIR 32 161 -47 273 255 41 61 chr4 25457085 25457183 -158831479 + MER91C DNA MER1_type 42 137 -3 * 227 375 42 0 chr4 25457183 25457256 -158831406 + MIR SINE MIR 177 253 -9 249 318 154 23 chr4 25457254 25457474 -158831188 + L2 LINE L2 2809 3057 -215 384 247 32 6 chr4 25457595 25457753 -158830909 + MER113 DNA MER1_type? 2 163 -358 217 269 194 0 chr4 25457873 25457940 -158830722 + L2 LINE L2 3160 3239 -33 224 297 0 0 chr4 25458426 25458500 -158830162 + (TAAA)n Simple_repeat Simple_repeat 2 75 0 2294 114 0 0 chr4 25458993 25459290 -158829372 + AluSg SINE Alu 1 297 -13 28 0 0 0 chr4 25459297 25459325 -158829337 + AT_rich Low_complexity Low_complexity 1 28 0 338 303 27 73 chr4 25460261 25460451 -158828211 + MIR SINE MIR 15 208 -54 258 32 0 0 chr4 25461164 25461195 -158827467 + (TC)n Simple_repeat Simple_repeat 1 31 0 216 0 0 0 chr4 25461194 25461218 -158827444 + (CA)n Simple_repeat Simple_repeat 1 24 0 * 258 32 0 0 chr4 25461632 25461663 -158826999 + (TG)n Simple_repeat Simple_repeat 2 32 0 218 191 0 0 chr4 25461829 25461876 -158826786 + CT-rich Low_complexity Low_complexity 2 48 0 234 105 0 0 chr4 25461931 25461969 -158826693 + (CA)n Simple_repeat Simple_repeat 1 38 0 222 372 35 35 chr4 25462486 25462599 -158826063 + L2 LINE L2 2867 2979 -293 206 396 30 10 chr4 25463932 25464033 -158824629 - MER5A DNA MER1_type -30 159 57 2261 114 7 0 chr4 25464125 25464524 -158824138 + AluSx SINE Alu 1 401 0 318 337 32 42 chr4 25465372 25465562 -158823100 + L2 LINE L2 2871 3058 -214 2108 120 3 0 chr4 25465763 25466054 -158822608 + AluSx SINE Alu 2 293 -19 694 340 25 0 chr4 25466169 25466407 -158822255 + MIR SINE MIR 3 246 -16 296 181 16 150 chr4 25466641 25466735 -158821927 - Charlie5 DNA MER1_type -16 2569 2513 1807 167 14 0 chr4 25466735 25467028 -158821634 - AluJo SINE Alu -14 298 2 296 181 16 150 chr4 25467028 25467126 -158821536 - Charlie5 DNA MER1_type -72 2513 2403 231 271 0 0 chr4 25467129 25467177 -158821485 - Charlie5 DNA MER1_type -2543 69 22 1989 136 26 7 chr4 25467196 25467498 -158821164 - AluSx SINE Alu -4 308 1 333 221 39 13 chr4 25468410 25468487 -158820175 + MLT1L LTR MaLR 2 80 -535 270 297 97 30 chr4 25468715 25468880 -158819782 + MLT1L LTR MaLR 433 608 -7 23 0 0 0 chr4 25469033 25469056 -158819606 + AT_rich Low_complexity Low_complexity 1 23 0 300 336 21 36 chr4 25469176 25469316 -158819346 - MIR SINE MIR -50 212 75 391 240 55 48 chr4 25469402 25469548 -158819114 - MIR SINE MIR 0 262 116 1641 114 157 0 chr4 25469779 25470041 -158818621 + AluSq SINE Alu 1 303 0 387 256 29 76 chr4 25470507 25470679 -158817983 + MIR SINE MIR 49 212 -50 1904 117 3 86 chr4 25470679 25471003 -158817659 + AluSx SINE Alu 1 297 -15 248 250 0 31 chr4 25471913 25471977 -158816685 + GA-rich Low_complexity Low_complexity 4 65 0 870 130 0 32 chr4 25471978 25472163 -158816499 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 223 311 58 10 chr4 25472864 25472967 -158815695 + MIR SINE MIR 146 253 -9 440 168 115 44 chr4 25473212 25473325 -158815337 + MER110A LTR ERV1 86 206 -262 269 332 80 9 chr4 25473432 25473642 -158815020 + MIR SINE MIR 26 252 -10 1709 216 30 28 chr4 25475217 25475296 -158813366 + MSTD LTR MaLR 1 78 -318 2239 92 7 3 chr4 25475296 25475591 -158813071 + AluY SINE Alu 1 296 -15 1709 216 30 28 chr4 25475591 25475904 -158812758 + MSTD LTR MaLR 78 394 -2 184 364 9 0 chr4 25475904 25476004 -158812658 + L2 LINE L2 3210 3313 0 305 299 69 35 chr4 25477872 25478046 -158810616 - MIR SINE MIR -64 198 19 547 271 39 7 chr4 25478845 25479000 -158809662 - MIR SINE MIR -18 244 85 1188 195 13 17 chr4 25479001 25479231 -158809431 + MLT1A1 LTR MaLR 2 230 -135 339 59 0 0 chr4 25479231 25479283 -158809379 - MLT2A1 LTR ERVL 0 453 409 270 0 0 0 chr4 25479283 25479313 -158809349 + (CA)n Simple_repeat Simple_repeat 2 31 0 680 240 12 6 chr4 25479313 25479660 -158809002 + (TATATG)n Simple_repeat Simple_repeat 1 349 0 276 306 0 0 chr4 25479691 25479812 -158808850 + (TATATG)n Simple_repeat Simple_repeat 2 122 0 37 0 0 0 chr4 25479812 25479849 -158808813 + AT_rich Low_complexity Low_complexity 1 37 0 2864 67 13 11 chr4 25479855 25480231 -158808431 - MLT2A1 LTR ERVL -67 377 1 687 194 22 8 chr4 25480235 25480369 -158808293 + MLT1A1 LTR MaLR 239 374 0 248 279 0 33 chr4 25480369 25480430 -158808232 - MIR SINE MIR -173 89 31 275 221 43 93 chr4 25481232 25481372 -158807290 + MIR SINE MIR 127 259 -3 443 319 154 42 chr4 25481383 25481740 -158806922 + L2 LINE L2 2299 2695 -619 783 144 110 0 chr4 25482319 25482465 -158806197 - FRAM SINE Alu -15 161 1 665 289 72 36 chr4 25482576 25482825 -158805837 + MIR SINE MIR 5 262 0 1336 183 83 69 chr4 25482833 25483193 -158805469 + MLT1A1 LTR MaLR 1 365 0 255 79 0 0 chr4 25483462 25483500 -158805162 + (TTCC)n Simple_repeat Simple_repeat 3 40 0 1710 192 10 13 chr4 25483504 25483811 -158804851 - AluJo SINE Alu -4 308 3 548 358 81 43 chr4 25484442 25484814 -158803848 + L2 LINE L2 2887 3272 0 2301 127 19 11 chr4 25486059 25486420 -158802242 + THE1B LTR MaLR 1 364 0 223 178 0 0 chr4 25486486 25486531 -158802131 + (TA)n Simple_repeat Simple_repeat 1 45 0 309 307 79 0 chr4 25487443 25487570 -158801092 + MIR SINE MIR 116 252 -10 2127 115 0 0 chr4 25488331 25488797 -158799865 + AluSg SINE Alu 3 468 0 236 268 18 0 chr4 25489095 25489151 -158799511 - MER58 DNA MER1_type -166 58 2 284 248 9 73 chr4 25489928 25490037 -158798625 - MIR SINE MIR 0 262 161 22 94 0 0 chr4 25490650 25490714 -158797948 + AT_rich Low_complexity Low_complexity 1 64 0 458 211 9 0 chr4 25491215 25491324 -158797338 + CT-rich Low_complexity Low_complexity 1 110 0 2042 122 14 3 chr4 25491324 25491619 -158797043 - AluSx SINE Alu -14 298 1 23 0 0 0 chr4 25491764 25491787 -158796875 + AT_rich Low_complexity Low_complexity 1 23 0 249 211 0 0 chr4 25492916 25492973 -158795689 + (TA)n Simple_repeat Simple_repeat 2 58 0 21 0 0 0 chr4 25493189 25493210 -158795452 + AT_rich Low_complexity Low_complexity 1 21 0 553 331 59 28 chr4 25493914 25494168 -158794494 + MIR SINE MIR 1 262 0 382 321 97 25 chr4 25494279 25494516 -158794146 - MIR SINE MIR -3 259 6 382 179 21 0 chr4 25494913 25495008 -158793654 + (CATTC)n Simple_repeat Simple_repeat 4 100 0 206 347 99 8 chr4 25495758 25495879 -158792783 + MER5A DNA MER1_type 7 138 -51 235 256 23 85 chr4 25496404 25496443 -158792219 - MIR SINE MIR -56 206 166 1961 154 0 7 chr4 25496443 25496736 -158791926 + AluSx SINE Alu 5 295 -17 235 256 23 85 chr4 25496736 25496825 -158791837 - MIR SINE MIR -96 166 86 1655 222 38 71 chr4 25497496 25497676 -158790986 + MLT1C LTR MaLR 6 190 -277 2326 101 0 0 chr4 25497676 25497982 -158790680 + AluSg SINE Alu 3 308 -2 1655 222 38 71 chr4 25497982 25498279 -158790383 + MLT1C LTR MaLR 190 467 0 1933 154 59 8 chr4 25498808 25499165 -158789497 + THE1C LTR MaLR 1 375 0 23 33 0 0 chr4 25499447 25499477 -158789185 + AT_rich Low_complexity Low_complexity 1 30 0 2063 114 4 0 chr4 25499642 25499958 -158788704 + AluSg SINE Alu 1 317 0 485 255 0 0 chr4 25500431 25500537 -158788125 - MER82 DNA MER2_type -547 106 1 2277 120 0 0 chr4 25500832 25501141 -158787521 + AluSx SINE Alu 1 309 -3 1011 304 113 32 chr4 25501457 25501575 -158787087 + MER69 DNA AcHobo 1 108 -1118 1676 196 3 3 chr4 25501575 25501886 -158786776 - AluJo SINE Alu -1 311 1 1011 304 113 32 chr4 25501886 25502238 -158786424 + MER69 DNA AcHobo 108 509 -717 1926 242 73 55 chr4 25502375 25503429 -158785233 + MER69 DNA AcHobo 1451 2523 -3 3234 136 76 7 chr4 25503533 25504127 -158784535 + LTR24C LTR ERV1 1 635 0 288 53 0 0 chr4 25504177 25504215 -158784447 + (TC)n Simple_repeat Simple_repeat 1 38 0 1649 216 24 11 chr4 25504255 25504626 -158784036 - MLT1E2 LTR MaLR 0 626 251 1229 110 23 0 chr4 25504631 25504804 -158783858 + MER41B LTR ERV1 365 541 -94 233 210 194 0 chr4 25504799 25504861 -158783801 - MLT1E1 LTR MaLR -380 246 173 * 2904 96 103 128 chr4 25504862 25505329 -158783333 + MER41B LTR ERV1 1 534 -101 4864 58 3 0 chr4 25505329 25505946 -158782716 - L1PA7 LINE L1 0 6154 5536 2904 96 103 128 chr4 25505946 25506041 -158782621 + MER41B LTR ERV1 534 630 -5 284 210 156 12 chr4 25506072 25506231 -158782431 - MLT1E1 LTR MaLR -431 193 11 301 215 0 161 chr4 25507097 25507246 -158781416 + MLT1H LTR MaLR 425 549 0 219 192 19 0 chr4 25507304 25507356 -158781306 + (TA)n Simple_repeat Simple_repeat 1 53 0 3029 145 6 29 chr4 25507623 25508148 -158780514 - Tigger4(Zombi) DNA MER2_type -1 2730 2218 284 261 0 0 chr4 25508153 25508218 -158780444 - Tigger4(Zombi) DNA MER2_type -2666 65 1 797 251 28 9 chr4 25508837 25509052 -158779610 - MER20 DNA MER1_type 0 219 1 347 242 205 42 chr4 25509118 25509213 -158779449 - MIR SINE MIR -4 258 180 2181 180 49 12 chr4 25509213 25509624 -158779038 + MSTB LTR MaLR 1 426 0 347 242 205 42 chr4 25509624 25509718 -158778944 - MIR SINE MIR -82 180 38 234 311 40 0 chr4 25509812 25509886 -158778776 + MIR3 SINE MIR 129 205 -3 201 108 0 0 chr4 25511982 25512019 -158776643 + (A)n Simple_repeat Simple_repeat 1 37 0 264 253 71 101 chr4 25513736 25513934 -158774728 - MLT1C LTR MaLR -270 197 6 523 288 196 14 chr4 25513976 25514354 -158774308 - L2 LINE L2 -154 3159 2719 358 325 148 39 chr4 25514555 25514860 -158773802 + L2 LINE L2 2935 3272 0 193 324 15 0 chr4 25516270 25516338 -158772324 - MIR SINE MIR -65 143 75 2175 128 3 0 chr4 25516584 25516889 -158771773 + AluSq SINE Alu 1 306 -7 339 271 50 29 chr4 25516948 25517088 -158771574 + MER103 DNA DNA 24 166 0 2170 117 0 0 chr4 25518157 25518470 -158770192 + AluSx SINE Alu 3 315 0 390 338 102 13 chr4 25518941 25519166 -158769496 + MIR SINE MIR 5 249 -13 22 0 0 0 chr4 25519171 25519193 -158769469 + AT_rich Low_complexity Low_complexity 1 22 0 207 320 39 0 chr4 25519201 25519279 -158769383 - MIR3 SINE MIR -19 189 109 233 382 10 10 chr4 25519663 25519765 -158768897 - MIR SINE MIR -62 146 45 275 331 115 22 chr4 25521838 25521977 -158766685 + MLT1K LTR MaLR 124 275 -313 2228 175 21 16 chr4 25524559 25524988 -158763674 - MSTB1 LTR MaLR 0 432 2 1380 239 32 27 chr4 25525045 25525417 -158763245 - MLT1A2 LTR MaLR 0 374 1 285 382 55 48 chr4 25525616 25526071 -158762591 - L2 LINE L2 -8 3264 2807 2164 138 122 8 chr4 25526237 25526621 -158762041 + MSTA LTR MaLR 1 428 0 209 219 14 0 chr4 25527160 25527233 -158761429 + (TA)n Simple_repeat Simple_repeat 2 75 0 1213 186 0 14 chr4 25528123 25528327 -158760335 + MLT1C LTR MaLR 24 224 -243 1883 166 78 28 chr4 25528327 25528856 -158759806 + MLT2A2 LTR ERVL 3 554 0 1178 219 4 27 chr4 25528856 25529112 -158759550 + MLT1C LTR MaLR 218 467 0 252 0 0 0 chr4 25529180 25529208 -158759454 + (A)n Simple_repeat Simple_repeat 1 28 0 252 0 0 0 chr4 25530156 25530184 -158758478 + (A)n Simple_repeat Simple_repeat 1 28 0 368 261 78 33 chr4 25530576 25530729 -158757933 - LTR33A LTR ERVL -42 481 322 206 191 24 0 chr4 25531646 25531688 -158756974 + (TTA)n Simple_repeat Simple_repeat 3 45 0 583 308 71 12 chr4 25531689 25531929 -158756733 - MIR SINE MIR -1 261 8 223 306 104 30 chr4 25532773 25532907 -158755755 - MIR SINE MIR -31 231 88 1882 148 21 3 chr4 25533552 25533843 -158754819 - AluSx SINE Alu -14 298 3 213 333 0 12 chr4 25534027 25534108 -158754554 + (TAG)n Simple_repeat Simple_repeat 1 80 0 371 262 48 24 chr4 25534121 25534247 -158754415 - MIR SINE MIR -15 247 119 325 264 71 20 chr4 25534353 25534550 -158754112 - L1M4 LINE L1 -2967 3179 2973 504 227 86 15 chr4 25534845 25535003 -158753659 + HsTC2 DNA Tc2 1228 1566 -332 286 284 43 0 chr4 25535004 25535120 -158753542 + HsTC2 DNA Tc2 1773 1893 -5 345 296 92 28 chr4 25535129 25535393 -158753269 - L1M4 LINE L1 -3181 2965 2686 259 203 27 0 chr4 25536405 25536479 -158752183 + CT-rich Low_complexity Low_complexity 3 78 0 22 56 0 0 chr4 25536723 25536759 -158751903 + AT_rich Low_complexity Low_complexity 1 36 0 443 253 76 102 chr4 25536785 25537010 -158751652 + MLT1J2 LTR MaLR 210 432 -18 2029 129 0 3 chr4 25538268 25538577 -158750085 + AluSq SINE Alu 1 308 0 192 383 9 9 chr4 25538581 25538688 -158749974 + L2 LINE L2 2892 2998 -274 2437 75 3 0 chr4 25538970 25539276 -158749386 + AluSg SINE Alu 1 307 -3 22 0 0 0 chr4 25539463 25539485 -158749177 + AT_rich Low_complexity Low_complexity 1 22 0 235 375 102 5 chr4 25541107 25541323 -158747339 - MIR SINE MIR -6 256 20 396 311 52 40 chr4 25542390 25542619 -158746043 + MIR SINE MIR 38 262 0 479 216 13 173 chr4 25542776 25542925 -158745737 - MER112 DNA MER1_type -7 253 174 765 61 0 0 chr4 25542925 25543024 -158745638 + (GAATG)n Simple_repeat Simple_repeat 2 100 0 479 216 13 173 chr4 25543024 25543175 -158745487 - MER112 DNA MER1_type -86 174 1 705 307 27 9 chr4 25544185 25544410 -158744252 + MIR SINE MIR 32 260 -2 240 235 29 15 chr4 25544886 25544954 -158743708 + L2 LINE L2 3198 3266 -6 281 325 107 12 chr4 25545515 25545684 -158742978 - MIR SINE MIR -76 186 2 396 313 95 21 chr4 25546027 25546270 -158742392 - MIR SINE MIR 0 262 2 23 33 0 0 chr4 25546353 25546383 -158742279 + AT_rich Low_complexity Low_complexity 1 30 0 291 301 98 22 chr4 25547105 25547288 -158741374 + L2 LINE L2 3112 3308 -5 188 304 107 65 chr4 25548109 25548277 -158740385 + MIR SINE MIR 32 206 -56 186 71 0 0 chr4 25548470 25548498 -158740164 + (CAA)n Simple_repeat Simple_repeat 2 29 0 227 269 0 0 chr4 25548500 25548552 -158740110 - MIR SINE MIR 0 262 211 796 310 22 50 chr4 25548707 25549071 -158739591 - L3 LINE CR1 -9 1568 1215 21 57 0 0 chr4 25549094 25549129 -158739533 + AT_rich Low_complexity Low_complexity 1 35 0 351 0 0 0 chr4 25550076 25550115 -158738547 + (TA)n Simple_repeat Simple_repeat 1 39 0 225 154 31 62 chr4 25550115 25550180 -158738482 - L1MC4 LINE L1 -1339 6703 6641 279 242 0 22 chr4 25550194 25550285 -158738377 + L1MC4 LINE L1 6615 6703 -1339 211 276 17 0 chr4 25550311 25550369 -158738293 - L2 LINE L2 -213 3059 3001 247 353 83 29 chr4 25550591 25550795 -158737867 + L2 LINE L2 3098 3312 -1 605 259 14 0 chr4 25551278 25551417 -158737245 - MER45A DNA AcHobo -34 144 4 274 281 0 0 chr4 25551437 25551501 -158737161 + GA-rich Low_complexity Low_complexity 3 66 0 336 345 89 54 chr4 25551766 25552192 -158736470 + L3 LINE CR1 977 1417 -160 216 0 0 0 chr4 25552267 25552291 -158736371 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 850 216 107 20 chr4 25552314 25552661 -158736001 + LTR37A LTR ERV1 50 426 0 279 333 29 9 chr4 25552675 25552780 -158735882 + L3 LINE CR1 1454 1560 -17 354 23 0 0 chr4 25554013 25554056 -158734606 + (TG)n Simple_repeat Simple_repeat 2 44 0 208 299 144 10 chr4 25555363 25555460 -158733202 + MIR SINE MIR 140 249 -13 466 103 0 0 chr4 25555805 25555873 -158732789 - MADE1 DNA Mariner 0 80 13 4462 69 5 2 chr4 25555893 25556470 -158732192 - L1PA8 LINE L1 -8 6164 5586 627 139 0 0 chr4 25556571 25556672 -158731990 + AluJb SINE Alu 211 311 -1 188 207 103 52 chr4 25557946 25558004 -158730658 - MIR SINE MIR -200 62 2 1608 188 7 82 chr4 25559904 25560308 -158728354 - MLT1A2 LTR MaLR 0 374 1 783 209 39 0 chr4 25560366 25560548 -158728114 - MER53 DNA DNA 0 189 1 301 287 10 10 chr4 25561207 25561308 -158727354 - MIR SINE MIR -61 201 101 180 0 0 0 chr4 25561344 25561364 -158727298 + (CAT)n Simple_repeat Simple_repeat 2 21 0 26 0 0 0 chr4 25561403 25561429 -158727233 + AT_rich Low_complexity Low_complexity 1 26 0 400 309 63 31 chr4 25562234 25562425 -158726237 - MIR SINE MIR -64 198 2 198 315 36 81 chr4 25563043 25563154 -158725508 - L2 LINE L2 -3 3310 3205 24 96 0 0 chr4 25563805 25563878 -158724784 + AT_rich Low_complexity Low_complexity 1 73 0 21 36 0 0 chr4 25564086 25564114 -158724548 + AT_rich Low_complexity Low_complexity 1 28 0 1667 178 28 14 chr4 25564854 25565141 -158723521 + AluJb SINE Alu 1 291 -21 1694 170 39 3 chr4 25566009 25566291 -158722371 - AluJb SINE Alu -20 292 1 240 314 29 39 chr4 25566505 25566607 -158722055 - MIR SINE MIR -79 183 83 262 358 40 55 chr4 25566620 25566821 -158721841 + L2 LINE L2 3070 3267 -5 2338 83 0 3 chr4 25567579 25567891 -158720771 + AluY SINE Alu 1 311 0 284 125 0 18 chr4 25567924 25567980 -158720682 + (GA)n Simple_repeat Simple_repeat 2 56 0 14454 141 27 6 chr4 25569067 25569793 -158718869 + Tigger1 DNA MER2_type 1 710 -1708 2216 156 50 35 chr4 25569793 25569982 -158718680 + MSTA LTR MaLR 1 186 -242 1866 177 0 13 chr4 25569982 25570298 -158718364 + AluSx SINE Alu 1 312 0 2216 156 50 35 chr4 25570298 25570530 -158718132 + MSTA LTR MaLR 186 428 0 14454 141 27 6 chr4 25570530 25570768 -158717894 + Tigger1 DNA MER2_type 710 941 -1477 1624 149 3 96 chr4 25570768 25571103 -158717559 + AluJo SINE Alu 1 304 -8 14454 141 27 6 chr4 25571103 25572502 -158716160 + Tigger1 DNA MER2_type 941 2415 -3 925 317 69 30 chr4 25572742 25572968 -158715694 - L2 LINE L2 0 3313 3097 1800 186 2 63 chr4 25572968 25573383 -158715279 - MLT1B LTR MaLR 0 390 1 925 317 69 30 chr4 25573383 25573731 -158714931 - L2 LINE L2 -216 3097 2720 262 278 0 2 chr4 25573745 25573809 -158714853 + MER58 DNA MER1_type 1 54 -170 4017 47 22 4 chr4 25574248 25574754 -158713908 - L1PA5 LINE L1 0 6154 5640 1923 144 0 27 chr4 25574978 25575277 -158713385 + AluSx SINE Alu 1 291 -21 365 262 60 7 chr4 25575977 25576126 -158712536 + MER113 DNA MER1_type? 5 161 -360 22 35 0 0 chr4 25576148 25576177 -158712485 + AT_rich Low_complexity Low_complexity 1 29 0 303 311 118 0 chr4 25576274 25576393 -158712269 - L2 LINE L2 -4 3268 3136 280 268 9 80 chr4 25576493 25576506 -158712156 - MIR SINE MIR -92 170 158 2454 62 3 0 chr4 25576506 25576795 -158711867 - AluSx SINE Alu -7 305 16 280 268 9 80 chr4 25576795 25576893 -158711769 - MIR SINE MIR -104 158 67 1234 234 23 40 chr4 25577140 25577486 -158711176 + MLT1A1 LTR MaLR 26 365 0 216 0 0 0 chr4 25577534 25577558 -158711104 + (T)n Simple_repeat Simple_repeat 1 24 0 24 0 0 0 chr4 25577981 25578005 -158710657 + AT_rich Low_complexity Low_complexity 1 24 0 237 258 8 100 chr4 25579382 25579437 -158709225 + MIR SINE MIR 76 116 -146 2230 103 7 3 chr4 25579437 25579739 -158708923 - AluSc SINE Alu -6 303 1 237 258 8 100 chr4 25579739 25579803 -158708859 + MIR SINE MIR 116 184 -78 188 372 99 8 chr4 25579896 25580017 -158708645 + L2 LINE L2 3141 3272 0 22 35 0 0 chr4 25580769 25580798 -158707864 + AT_rich Low_complexity Low_complexity 1 29 0 540 275 123 8 chr4 25580849 25581052 -158707610 + MIR SINE MIR 3 226 -36 1645 143 102 16 chr4 25581201 25581516 -158707146 - MER46B DNA MER2_type -19 217 1 2305 65 7 0 chr4 25581666 25581959 -158706703 + AluY SINE Alu 1 295 -16 2817 196 73 30 chr4 25582074 25582285 -158706377 + L1MB8 LINE L1 5454 5654 -524 2140 96 0 14 chr4 25582285 25582577 -158706085 + AluSc SINE Alu 1 288 -21 2817 196 73 30 chr4 25582577 25582902 -158705760 + L1MB8 LINE L1 5654 6030 -148 2056 127 0 3 chr4 25582902 25583223 -158705439 - AluSx SINE Alu 0 320 1 2817 196 73 30 chr4 25583223 25583379 -158705283 + L1MB8 LINE L1 6030 6178 0 1398 135 46 29 chr4 25584251 25584568 -158704094 + THE1C LTR MaLR 1 375 0 659 288 91 18 chr4 25584734 25585130 -158703532 - HAL1 LINE L1 -241 2266 1842 415 207 21 29 chr4 25585243 25585383 -158703279 - L1MC4a LINE L1 -2 7806 7668 1953 230 49 26 chr4 25585389 25585827 -158702835 - L1MD2 LINE L1 -216 6537 6083 1822 175 0 14 chr4 25585827 25586124 -158702538 - AluJb SINE Alu -19 293 1 1953 230 49 26 chr4 25586124 25586219 -158702443 - L1MD2 LINE L1 -670 6083 5992 2590 188 59 40 chr4 25586220 25587022 -158701640 - L1MD2 LINE L1 -3890 2650 1929 1288 229 99 43 chr4 25587022 25587110 -158701552 + MLT1C LTR MaLR 1 83 -384 1677 150 81 36 chr4 25587110 25587469 -158701193 - THE1C LTR MaLR 0 375 1 1288 229 99 43 chr4 25587469 25587822 -158700840 + MLT1C LTR MaLR 83 467 0 872 291 106 49 chr4 25587835 25588468 -158700194 - HAL1 LINE L1 -1836 671 3 1560 170 3 87 chr4 25588579 25588902 -158699760 - AluJo SINE Alu -10 302 7 998 171 93 0 chr4 25588944 25589160 -158699502 - L1MA9 LINE L1 -4 6308 6073 216 0 0 0 chr4 25589494 25589518 -158699144 + (TC)n Simple_repeat Simple_repeat 1 24 0 475 206 142 64 chr4 25589567 25589708 -158698954 - MIR SINE MIR -81 181 30 219 100 0 100 chr4 25589705 25589755 -158698907 + MIR SINE MIR 218 262 0 * 204 162 15 59 chr4 25589975 25590003 -158698659 + A-rich Low_complexity Low_complexity 4 32 -36 1780 145 49 30 chr4 25590003 25590307 -158698355 + AluJb SINE Alu 3 312 0 204 162 15 59 chr4 25590307 25590346 -158698316 + A-rich Low_complexity Low_complexity 32 68 0 2099 154 8 46 chr4 25591228 25591453 -158697209 - THE1C LTR MaLR 0 375 170 1887 139 20 33 chr4 25591453 25591755 -158696907 + AluSx SINE Alu 1 298 -14 2099 154 8 46 chr4 25591755 25591919 -158696743 - THE1C LTR MaLR -205 170 1 199 302 54 62 chr4 25591921 25592050 -158696612 - MIR3 SINE MIR -36 172 45 25115 141 16 20 chr4 25592129 25598546 -158690116 + L1PA8A LINE L1 3 6446 0 523 329 98 31 chr4 25599201 25599618 -158689044 + L1ME LINE L1 5313 5757 -364 558 293 186 51 chr4 25601033 25601706 -158686956 + L2 LINE L2 2566 3313 0 206 181 14 153 chr4 25601833 25601905 -158686757 + MIR SINE MIR 127 188 -74 412 303 50 40 chr4 25602075 25602273 -158686389 + MIR SINE MIR 11 210 -52 192 40 0 0 chr4 25602691 25602716 -158685946 + (T)n Simple_repeat Simple_repeat 1 25 0 601 197 14 48 chr4 25602772 25602919 -158685743 + FLAM_A SINE Alu 1 142 0 808 167 15 0 chr4 25603242 25603374 -158685288 + AluJb SINE Alu 163 296 -16 378 277 112 37 chr4 25604799 25604988 -158683674 - MIR SINE MIR -50 212 6 202 339 0 0 chr4 25605486 25605545 -158683117 - L2 LINE L2 -1 3271 3213 1034 146 152 3 chr4 25606157 25606480 -158682182 + MER33 DNA MER1_type 5 360 -3 21 36 0 0 chr4 25606559 25606587 -158682075 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 25606820 25606841 -158681821 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr4 25606915 25606958 -158681704 + AT_rich Low_complexity Low_complexity 1 43 0 850 165 0 8 chr4 25607286 25607419 -158681243 + FRAM SINE Alu 21 152 -24 329 203 0 0 chr4 25607577 25607636 -158681026 + L2 LINE L2 3251 3309 -4 22 35 0 0 chr4 25607780 25607809 -158680853 + AT_rich Low_complexity Low_complexity 1 29 0 443 298 107 6 chr4 25609479 25609575 -158679087 - MIR SINE MIR -2 260 175 249 33 0 0 chr4 25609575 25609605 -158679057 + (TTA)n Simple_repeat Simple_repeat 3 32 0 443 298 107 6 chr4 25609605 25609686 -158678976 - MIR SINE MIR -87 175 65 224 341 95 24 chr4 25609819 25609945 -158678717 - MIR SINE MIR -119 143 9 501 272 99 71 chr4 25610103 25610397 -158678265 + L2 LINE L2 3010 3311 -2 441 319 56 30 chr4 25610434 25610666 -158677996 - MIR SINE MIR -9 253 16 186 317 17 17 chr4 25610889 25610949 -158677713 - MIR SINE MIR -181 81 22 819 101 0 0 chr4 25611222 25611341 -158677321 + (TTTC)n Simple_repeat Simple_repeat 2 120 0 1886 104 4 19 chr4 25611353 25611622 -158677040 - AluSq SINE Alu -48 265 1 2203 115 0 0 chr4 25611867 25612163 -158676499 - AluSc SINE Alu -13 296 1 219 294 83 28 chr4 25613113 25613222 -158675440 - MIR SINE MIR -50 212 98 1854 125 44 14 chr4 25613276 25613571 -158675091 - AluSx SINE Alu -8 304 1 294 333 30 10 chr4 25613829 25613928 -158674734 + MIR SINE MIR 41 141 -67 543 271 132 39 chr4 25613969 25614249 -158674413 - L2 LINE L2 0 3313 3008 227 260 78 13 chr4 25614369 25614446 -158674216 + L2 LINE L2 3189 3270 -43 1961 133 29 40 chr4 25615867 25616244 -158672418 + THE1C LTR MaLR 1 373 -2 497 262 69 64 chr4 25616817 25617283 -158671379 - L1MC5 LINE L1 -44 7917 7450 2749 183 10 4 chr4 25618017 25618510 -158670152 - Tigger7 DNA MER2_type -237 496 1 1349 241 111 28 chr4 25620277 25620708 -158667954 - MLT1C LTR MaLR 0 467 1 488 319 79 63 chr4 25621588 25622146 -158666516 - L1ME4a LINE L1 -216 5905 5334 1911 166 29 16 chr4 25622146 25622531 -158666131 + MLT1B LTR MaLR 1 390 0 488 319 79 63 chr4 25622531 25622603 -158666059 - L1ME4a LINE L1 -787 5334 5265 343 270 0 0 chr4 25623657 25623731 -158664931 - L2 LINE L2 0 3272 3199 2026 219 46 38 chr4 25624842 25625339 -158663323 + MLT1D LTR MaLR 3 503 -2 2143 117 0 0 chr4 25626364 25626678 -158661984 - AluSg SINE Alu 0 314 1 227 336 64 7 chr4 25627642 25627782 -158660880 - MIR SINE MIR -10 252 105 270 349 54 12 chr4 25627838 25628004 -158660658 + L2 LINE L2 3141 3313 0 242 191 0 16 chr4 25628036 25628099 -158660563 + GA-rich Low_complexity Low_complexity 1 62 0 221 274 0 15 chr4 25628216 25628351 -158660311 + (TATATG)n Simple_repeat Simple_repeat 2 134 0 24 85 0 0 chr4 25629066 25629125 -158659537 + AT_rich Low_complexity Low_complexity 1 59 0 1983 114 7 35 chr4 25630288 25630624 -158658038 - AluY SINE Alu 0 328 1 300 374 27 21 chr4 25630808 25630995 -158657667 + MIR3 SINE MIR 12 199 -9 210 370 109 8 chr4 25631262 25631381 -158657281 + MIR3 SINE MIR 33 163 -45 364 21 0 0 chr4 25631395 25631442 -158657220 - L1PA3 LINE L1 0 6155 6109 24 32 0 0 chr4 25631659 25631690 -158656972 + AT_rich Low_complexity Low_complexity 1 31 0 613 302 73 58 chr4 25632165 25632546 -158656116 - MLT1I LTR MaLR -12 397 11 361 257 40 159 chr4 25632696 25632754 -158655908 + L2 LINE L2 3030 3093 -179 1595 239 7 38 chr4 25632754 25633201 -158655461 + MER63B DNA MER1_type 1 433 -3 361 257 40 159 chr4 25633201 25633418 -158655244 + L2 LINE L2 3093 3272 0 422 95 21 44 chr4 25635144 25635234 -158653428 - LTR41 LTR ERVL 0 795 688 21 36 0 0 chr4 25636281 25636309 -158652353 + AT_rich Low_complexity Low_complexity 1 28 0 32 26 0 0 chr4 25636380 25636419 -158652243 + AT_rich Low_complexity Low_complexity 1 39 0 305 330 48 43 chr4 25637170 25637295 -158651367 + L3 LINE CR1 1365 1493 -84 1788 177 0 7 chr4 25637295 25637595 -158651067 - AluJb SINE Alu -14 298 1 305 330 48 43 chr4 25637595 25637678 -158650984 + L3 LINE CR1 1493 1574 -3 22 56 0 0 chr4 25638237 25638273 -158650389 + AT_rich Low_complexity Low_complexity 1 36 0 397 257 29 0 chr4 25638315 25638420 -158650242 + L1MEc LINE L1 66 173 -6223 21 36 0 0 chr4 25638656 25638684 -158649978 + AT_rich Low_complexity Low_complexity 1 28 0 186 286 60 12 chr4 25639280 25639364 -158649298 - L2 LINE L2 -44 3269 3182 1923 277 173 10 chr4 25639486 25640470 -158648192 - L2 LINE L2 -184 3129 1993 1985 160 0 0 chr4 25640591 25640879 -158647783 - AluSx SINE Alu -24 288 1 861 241 48 66 chr4 25640907 25641326 -158647336 - MLT1A1 LTR MaLR 0 365 4 334 382 76 0 chr4 25641596 25641753 -158646909 - L2 LINE L2 0 3272 3104 23 33 0 0 chr4 25642555 25642585 -158646077 + AT_rich Low_complexity Low_complexity 1 30 0 243 300 29 0 chr4 25642585 25642655 -158646007 - L2 LINE L2 -16 3297 3226 223 343 37 46 chr4 25644085 25644193 -158644469 - MIR SINE MIR -140 122 16 320 357 18 9 chr4 25647140 25647252 -158641410 - MIR SINE MIR -149 113 1 4426 36 25 0 chr4 25647346 25647894 -158640768 + L1PA5 LINE L1 5593 6154 0 1971 154 3 3 chr4 25648351 25648745 -158639917 - AluSq SINE Alu 0 394 1 264 111 0 0 chr4 25649854 25649890 -158638772 - 5S rRNA rRNA -79 42 7 350 165 0 51 chr4 25649890 25649969 -158638693 + L1PA10 LINE L1 6091 6165 -3 944 200 68 10 chr4 25651145 25651350 -158637312 + MER20 DNA MER1_type 2 218 -1 1876 135 7 16 chr4 25651894 25652198 -158636464 + AluSx SINE Alu 4 304 -8 1598 87 5 0 chr4 25652997 25653204 -158635458 + AluY SINE Alu 1 208 -103 902 96 0 0 chr4 25653204 25653432 -158635230 + AluY SINE Alu 158 385 0 888 0 8 0 chr4 25653329 25653665 -158634997 + (TAAAA)n Simple_repeat Simple_repeat 1 338 0 399 289 28 33 chr4 25653860 25654040 -158634622 + CT-rich Low_complexity Low_complexity 2 180 0 1806 140 10 10 chr4 25654669 25654983 -158633679 + L1MA4A LINE L1 5981 6294 -9 416 271 24 41 chr4 25655238 25655428 -158633234 - MIR SINE MIR -46 216 37 388 320 72 17 chr4 25656421 25656602 -158632060 + MIR SINE MIR 10 200 -62 2258 107 0 31 chr4 25656943 25657260 -158631402 - AluSc SINE Alu -2 307 1 364 283 0 9 chr4 25657491 25657604 -158631058 + L1MC/D LINE L1 5678 5789 -2019 253 281 216 14 chr4 25657681 25657820 -158630842 - MIR3 SINE MIR -41 167 1 388 313 17 17 chr4 25660035 25660150 -158628512 - MER5A DNA MER1_type -68 121 7 393 22 0 0 chr4 25660483 25660529 -158628133 + (TG)n Simple_repeat Simple_repeat 2 47 0 376 331 38 17 chr4 25662704 25662981 -158625681 + L2 LINE L2 2975 3304 -9 4932 212 44 64 chr4 25663002 25665036 -158623626 - L1MD1 LINE L1 -7 6235 4281 320 64 0 0 chr4 25665036 25665079 -158623583 + L1PA2 LINE L1 6109 6155 0 4932 212 44 64 chr4 25665079 25665959 -158622703 - L1MD1 LINE L1 -1961 4281 3385 1476 217 16 36 chr4 25666003 25666367 -158622295 + MLT1A2 LTR MaLR 4 360 -14 2170 121 3 0 chr4 25666448 25666753 -158621909 + AluSx SINE Alu 1 306 -6 3274 167 18 23 chr4 25666895 25667558 -158621104 - L1MA7 LINE L1 0 6291 5632 2775 159 17 26 chr4 25667558 25668341 -158620321 + L1MA7 LINE L1 4857 5634 -657 903 346 98 13 chr4 25668367 25669190 -158619472 + L2 LINE L2 2418 3313 0 207 0 0 0 chr4 25670945 25670968 -158617694 + (TTA)n Simple_repeat Simple_repeat 2 24 0 225 0 0 0 chr4 25671110 25671135 -158617527 + (T)n Simple_repeat Simple_repeat 1 25 0 217 132 0 0 chr4 25673499 25673537 -158615125 + (TTTTTA)n Simple_repeat Simple_repeat 3 40 0 21 0 0 0 chr4 25673599 25673620 -158615042 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chr4 25673812 25673852 -158614810 + AT_rich Low_complexity Low_complexity 1 40 0 2177 94 0 7 chr4 25674865 25675173 -158613489 - AluSx SINE Alu 0 306 1 25 0 0 0 chr4 25675173 25675198 -158613464 + AT_rich Low_complexity Low_complexity 1 25 0 276 331 32 16 chr4 25675223 25675347 -158613315 + LTR33 LTR ERVL 152 277 -244 207 0 0 0 chr4 25675601 25675624 -158613038 + (A)n Simple_repeat Simple_repeat 1 23 0 2138 124 3 3 chr4 25676453 25676759 -158611903 + AluSg SINE Alu 1 306 -4 483 326 61 13 chr4 25677038 25677268 -158611394 - LTR33 LTR ERVL -174 347 107 2343 133 73 2 chr4 25677728 25678126 -158610536 - MSTB LTR MaLR 0 426 1 399 151 32 0 chr4 25678274 25678324 -158610338 + (TA)n Simple_repeat Simple_repeat 2 97 0 284 70 23 0 chr4 25678324 25678367 -158610295 + (TA)n Simple_repeat Simple_repeat 2 45 0 222 293 50 40 chr4 25678952 25679051 -158609611 + MIR SINE MIR 48 147 -115 239 296 0 0 chr4 25679296 25679350 -158609312 - L2 LINE L2 0 3272 3219 1141 186 13 9 chr4 25680028 25680259 -158608403 - MER46A DNA MER2_type -2 234 3 229 279 93 0 chr4 25680600 25680686 -158607976 + L2 LINE L2 3008 3101 -212 424 263 0 0 chr4 25680719 25680818 -158607844 + MER94 DNA DNA 21 119 -15 205 372 100 17 chr4 25680820 25681000 -158607662 + L2 LINE L2 3110 3304 -9 4675 8 0 0 chr4 25681118 25681645 -158607017 - L1PA2 LINE L1 0 6155 5629 24 100 0 0 chr4 25681954 25682034 -158606628 + AT_rich Low_complexity Low_complexity 1 80 0 333 284 47 39 chr4 25682749 25682876 -158605786 - MIR3 SINE MIR -8 200 73 241 403 13 13 chr4 25682952 25683101 -158605561 + MIR3 SINE MIR 2 150 -58 321 51 0 0 chr4 25683538 25683577 -158605085 - L1PA5 LINE L1 -205 5949 5911 1621 53 0 5 chr4 25683577 25683774 -158604888 + L1PA5 LINE L1 5942 6146 -8 21 36 0 0 chr4 25683926 25683954 -158604708 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr4 25684006 25684041 -158604621 + AT_rich Low_complexity Low_complexity 1 35 0 1135 124 54 0 chr4 25684318 25684503 -158604159 - L1PA14 LINE L1 -1 6160 5966 1437 301 83 32 chr4 25685151 25685183 -158603479 - L2 LINE L2 0 3313 3284 1401 227 70 55 chr4 25685183 25685641 -158603021 + MLT1C LTR MaLR 1 465 -2 1437 301 83 32 chr4 25685641 25686450 -158602212 - L2 LINE L2 -29 3284 2379 2400 67 3 22 chr4 25686557 25686873 -158601789 - AluY SINE Alu -1 310 1 240 221 0 87 chr4 25686906 25687033 -158601629 + CT-rich Low_complexity Low_complexity 1 116 0 220 202 20 61 chr4 25687397 25687496 -158601166 + (TA)n Simple_repeat Simple_repeat 2 96 0 184 87 0 43 chr4 25687509 25687555 -158601107 + (TTTAA)n Simple_repeat Simple_repeat 3 46 0 206 81 27 0 chr4 25687620 25687657 -158601005 + (TA)n Simple_repeat Simple_repeat 1 38 0 1665 146 30 43 chr4 25687971 25688273 -158600389 - AluSx SINE Alu -14 298 1 1889 196 107 35 chr4 25688490 25688974 -158599688 - MLT1F LTR MaLR 0 542 24 628 226 0 0 chr4 25689678 25689793 -158598869 - FLAM_A SINE Alu -19 123 9 231 114 0 0 chr4 25690457 25690501 -158598161 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 2091 177 14 0 chr4 25690605 25690826 -158597836 + THE1C LTR MaLR 1 230 -145 3852 56 4 2 chr4 25690826 25691311 -158597351 + L1PA7 LINE L1 5669 6154 0 2091 177 14 0 chr4 25691311 25691457 -158597205 + THE1C LTR MaLR 230 373 -2 1522 185 24 80 chr4 25691575 25691986 -158596676 + MLT1B LTR MaLR 1 388 -2 260 229 48 67 chr4 25692251 25692356 -158596306 + MIR SINE MIR 150 252 -10 2840 185 88 98 chr4 25692517 25692854 -158595808 + L1MC3 LINE L1 6793 7132 -653 228 292 0 14 chr4 25692854 25692926 -158595736 + MLT1F1 LTR MaLR 40 110 -457 2840 185 88 98 chr4 25692926 25693355 -158595307 + L1MC3 LINE L1 7132 7621 -164 1777 148 25 14 chr4 25693355 25693638 -158595024 + AluJb SINE Alu 1 286 -26 2840 185 88 98 chr4 25693638 25693782 -158594880 + L1MC3 LINE L1 7621 7765 -20 231 389 23 78 chr4 25694590 25694937 -158593725 - L2 LINE L2 -27 3245 2918 247 308 54 32 chr4 25695026 25695211 -158593451 - L2 LINE L2 -431 2883 2695 352 294 112 69 chr4 25695490 25695766 -158592896 - L2 LINE L2 -4 3309 3022 2220 112 0 0 chr4 25696017 25696313 -158592349 - AluSq SINE Alu -17 296 1 2436 141 30 30 chr4 25696386 25696627 -158592035 - MSTA LTR MaLR -2 426 183 2188 119 0 6 chr4 25696627 25696938 -158591724 - AluSg SINE Alu -1 309 1 2436 141 30 30 chr4 25696938 25697122 -158591540 - MSTA LTR MaLR -244 184 1 23 33 0 0 chr4 25697189 25697219 -158591443 + AT_rich Low_complexity Low_complexity 1 30 0 2879 31 37 0 chr4 25697219 25697573 -158591089 - L1PA5 LINE L1 -13 6141 5775 7848 38 0 0 chr4 25697575 25698531 -158590131 + L1P LINE L1 1592 2547 -3599 300 313 118 31 chr4 25698678 25698692 -158589970 - L1M4 LINE L1 -1176 4970 4959 1469 237 39 61 chr4 25698692 25699250 -158589412 + LTR55 LTR ERV 1 546 -2 300 313 118 31 chr4 25699250 25699430 -158589232 - L1M4 LINE L1 -1187 4959 4759 368 282 28 36 chr4 25699532 25699780 -158588882 - L1M4 LINE L1 -1523 4623 4378 330 267 96 99 chr4 25700297 25700702 -158587960 - L1M4 LINE L1 -2649 3497 3094 209 328 0 30 chr4 25701500 25701567 -158587095 - MIR SINE MIR -178 84 20 225 65 0 0 chr4 25702179 25702210 -158586452 + (TAAA)n Simple_repeat Simple_repeat 4 34 0 24 0 0 0 chr4 25702324 25702348 -158586314 + AT_rich Low_complexity Low_complexity 1 24 0 249 267 47 12 chr4 25703048 25703134 -158585528 + L3 LINE CR1 624 712 -865 309 247 55 0 chr4 25703436 25703509 -158585153 + L2 LINE L2 3203 3279 -34 1252 204 81 32 chr4 25703805 25704149 -158584513 - MLT1A2 LTR MaLR -13 361 1 191 150 125 0 chr4 25705089 25705129 -158583533 + MIR SINE MIR 100 144 -64 43 0 0 0 chr4 25705380 25705423 -158583239 + AT_rich Low_complexity Low_complexity 1 43 0 2163 103 0 20 chr4 25705427 25705728 -158582934 - AluSg SINE Alu -15 295 1 1953 166 0 0 chr4 25706429 25706730 -158581932 + AluSx SINE Alu 1 301 -11 793 291 160 0 chr4 25707181 25707456 -158581206 - MLT1I LTR MaLR 0 409 91 423 272 123 31 chr4 25707527 25707722 -158580940 - MIR SINE MIR -21 241 29 493 311 145 23 chr4 25707953 25708297 -158580365 - MLT1J2 LTR MaLR 0 450 65 222 100 0 0 chr4 25708709 25708739 -158579923 + MIR SINE MIR 119 148 -114 711 247 5 32 chr4 25709309 25709499 -158579163 - MER5A DNA MER1_type -3 186 2 185 337 105 23 chr4 25709941 25710027 -158578635 + MIR SINE MIR 96 188 -74 268 282 13 13 chr4 25710072 25710150 -158578512 + CT-rich Low_complexity Low_complexity 3 80 0 1405 207 70 0 chr4 25711098 25711369 -158577293 + AluJb SINE Alu 1 290 -22 25 65 0 0 chr4 25711370 25711416 -158577246 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr4 25713106 25713127 -158575535 + AT_rich Low_complexity Low_complexity 1 21 0 408 20 0 0 chr4 25713323 25713372 -158575290 + (TG)n Simple_repeat Simple_repeat 2 50 0 221 0 0 33 chr4 25713372 25713402 -158575260 + (GTTTG)n Simple_repeat Simple_repeat 1 29 0 183 204 0 0 chr4 25713818 25713872 -158574790 + CT-rich Low_complexity Low_complexity 2 55 0 635 227 16 7 chr4 25713981 25714148 -158574514 + MLT1E2 LTR MaLR 442 611 -13 732 267 84 18 chr4 25714959 25715184 -158573478 - MIR SINE MIR -12 250 11 1267 246 77 31 chr4 25715184 25715477 -158573185 + MLT1D LTR MaLR 1 327 -178 1617 119 5 0 chr4 25715477 25715733 -158572929 + AluSg/x SINE Alu 65 321 0 1267 246 77 31 chr4 25715733 25715918 -158572744 + MLT1D LTR MaLR 327 502 -3 2363 76 3 0 chr4 25716527 25716817 -158571845 + AluSx SINE Alu 2 292 -20 313 307 27 67 chr4 25717858 25718008 -158570654 + MIR SINE MIR 33 176 -86 21 36 0 0 chr4 25718151 25718179 -158570483 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr4 25718354 25718383 -158570279 + AT_rich Low_complexity Low_complexity 1 29 0 228 184 13 26 chr4 25718875 25718951 -158569711 + CT-rich Low_complexity Low_complexity 1 75 0 462 363 57 60 chr4 25719888 25720238 -158568424 - L2 LINE L2 0 3272 2924 661 306 73 7 chr4 25720334 25720864 -158567798 - L2 LINE L2 -174 3139 2574 1170 190 56 7 chr4 25721675 25721944 -158566718 + L1MA4 LINE L1 6015 6296 -4 365 312 16 40 chr4 25722261 25722386 -158566276 + MER5A DNA MER1_type 1 122 -67 265 308 0 0 chr4 25722761 25722839 -158565823 + MIR SINE MIR 185 262 0 22 80 0 0 chr4 25722934 25722984 -158565678 + AT_rich Low_complexity Low_complexity 1 50 0 1004 186 62 19 chr4 25723749 25723959 -158564703 + MER58A DNA MER1_type 2 220 -4 202 296 74 12 chr4 25724040 25724121 -158564541 + MIR SINE MIR 92 177 -85 2135 135 33 30 chr4 25724861 25725224 -158563438 - THE1B LTR MaLR 0 364 1 182 65 65 0 chr4 25725693 25725724 -158562938 + T-rich Low_complexity Low_complexity 2 34 0 421 79 0 16 chr4 25726530 25726593 -158562069 - L1P LINE L1 -730 5424 5363 * 867 141 14 0 chr4 25726590 25726732 -158561930 + L1P3 LINE L1 5429 5572 -582 399 332 97 20 chr4 25727563 25727759 -158560903 - MIR SINE MIR -20 242 32 30 0 0 0 chr4 25728472 25728502 -158560160 + AT_rich Low_complexity Low_complexity 1 30 0 340 202 12 12 chr4 25728522 25728606 -158560056 - L1M4 LINE L1 -3467 2679 2596 * 3685 246 36 5 chr4 25728603 25729740 -158558922 + L1M4 LINE L1 2610 3781 -2365 1151 144 6 2 chr4 25729727 25729933 -158558729 + L1MB8 LINE L1 5809 5991 -187 * 5946 141 20 12 chr4 25729930 25730419 -158558243 + L1MA6 LINE L1 5275 5759 -541 328 85 0 34 chr4 25730419 25730478 -158558184 + (TAAA)n Simple_repeat Simple_repeat 4 60 0 5946 141 20 12 chr4 25730478 25730498 -158558164 + L1MA6 LINE L1 5759 5777 -523 423 68 0 0 chr4 25730498 25730557 -158558105 + (CA)n Simple_repeat Simple_repeat 2 60 0 5946 141 20 12 chr4 25730557 25730765 -158557897 + L1MA6 LINE L1 5777 5982 -318 2155 114 51 17 chr4 25730765 25731117 -158557545 + THE1B LTR MaLR 1 364 0 5946 141 20 12 chr4 25731117 25731415 -158557247 + L1MA6 LINE L1 5982 6300 0 986 253 92 3 chr4 25731769 25731922 -158556740 - MER5C DNA MER1_type -2 322 184 1712 154 151 21 chr4 25731922 25732299 -158556363 - MSTA LTR MaLR 0 428 3 986 253 92 3 chr4 25732299 25732438 -158556224 - MER5C DNA MER1_type -140 184 4 1234 234 49 40 chr4 25732589 25732914 -158555748 + MLT1A2 LTR MaLR 47 374 0 3763 291 121 17 chr4 25733093 25734241 -158554421 - L2 LINE L2 -357 2957 1594 186 43 0 0 chr4 25734241 25734264 -158554398 + (ATG)n Simple_repeat Simple_repeat 1 23 0 3763 291 121 17 chr4 25734264 25734722 -158553940 - L2 LINE L2 -1720 1594 1185 4090 19 0 0 chr4 25734851 25735324 -158553338 + L1PA2 LINE L1 5677 6149 -6 212 197 14 84 chr4 25737081 25737152 -158551510 + MIR SINE MIR 64 129 -133 378 0 0 0 chr4 25737466 25737508 -158551154 + (TA)n Simple_repeat Simple_repeat 2 43 0 250 323 0 0 chr4 25737551 25737613 -158551049 + polypurine Low_complexity Low_complexity 6 67 0 237 226 57 0 chr4 25737692 25737745 -158550917 + MIR SINE MIR 118 173 -89 209 83 28 0 chr4 25737762 25737798 -158550864 + (TCTA)n Simple_repeat Simple_repeat 2 38 0 494 257 9 0 chr4 25738267 25738380 -158550282 + MER81 DNA DNA 1 114 0 466 281 14 22 chr4 25738914 25739053 -158549609 - MER5A DNA MER1_type -6 183 46 200 360 27 0 chr4 25739078 25739153 -158549509 + MER5A DNA MER1_type 30 106 -83 472 308 154 4 chr4 25739261 25739488 -158549174 - MIR SINE MIR 0 262 2 326 237 40 0 chr4 25739883 25739959 -158548703 + MIR SINE MIR 114 192 -70 201 175 0 0 chr4 25740509 25740549 -158548113 + T-rich Low_complexity Low_complexity 1 40 0 505 291 216 0 chr4 25740701 25740900 -158547762 - MIR SINE MIR -5 257 16 206 367 13 0 chr4 25741764 25741843 -158546819 - MIR SINE MIR -74 188 109 216 417 27 16 chr4 25742491 25742678 -158545984 - MIR SINE MIR -42 220 32 201 245 20 0 chr4 25742719 25742768 -158545894 + CT-rich Low_complexity Low_complexity 5 54 0 182 93 0 70 chr4 25743420 25743463 -158545199 + (TGGA)n Simple_repeat Simple_repeat 1 40 0 457 208 21 83 chr4 25743498 25743642 -158545020 - L2 LINE L2 0 3313 3179 213 39 0 0 chr4 25743668 25743694 -158544968 + (TA)n Simple_repeat Simple_repeat 1 26 0 264 227 13 13 chr4 25743814 25743889 -158544773 - MLT1E2 LTR MaLR 0 626 552 922 238 47 101 chr4 25743890 25744188 -158544474 - MLT1D-int LTR MaLR -129 1242 961 3766 211 13 47 chr4 25744365 25745279 -158543383 - MLT1D-int LTR MaLR -487 884 2 2022 190 55 41 chr4 25745284 25745826 -158542836 + MER44D DNA MER2_type 1 605 0 1070 233 47 37 chr4 25745826 25746148 -158542514 - MLT1D LTR MaLR -2 503 179 568 178 75 0 chr4 25746196 25746303 -158542359 - MLT2C2 LTR ERVL -48 416 302 789 216 25 20 chr4 25746321 25746520 -158542142 + L1ME1 LINE L1 5682 5881 -285 17382 36 2 0 chr4 25746548 25749416 -158539246 - L1PA5 LINE L1 -4 6150 3270 1162 214 26 13 chr4 25749416 25749650 -158539012 - AluJb SINE Alu -54 258 22 1228 176 140 0 chr4 25749656 25749934 -158538728 - MLT2C2 LTR ERVL -147 317 1 1788 285 157 18 chr4 25749954 25750910 -158537752 - L2 LINE L2 -305 3008 1794 2548 55 0 7 chr4 25751879 25752188 -158536474 + AluY SINE Alu 1 307 -4 27 0 0 0 chr4 25752383 25752410 -158536252 + AT_rich Low_complexity Low_complexity 1 27 0 180 77 0 0 chr4 25752459 25752485 -158536177 + (TTTTG)n Simple_repeat Simple_repeat 4 29 0 353 251 73 78 chr4 25753578 25753797 -158534865 - MLT1J LTR MaLR -187 324 107 2496 54 0 0 chr4 25754141 25754437 -158534225 - AluY SINE Alu -11 300 5 22 94 0 0 chr4 25754576 25754640 -158534022 + AT_rich Low_complexity Low_complexity 1 64 0 396 0 0 0 chr4 25755397 25755441 -158533221 + (CA)n Simple_repeat Simple_repeat 2 45 0 302 252 87 68 chr4 25756402 25756505 -158532157 - L2 LINE L2 -20 3252 3148 628 261 102 31 chr4 25756527 25756753 -158531909 - MIR SINE MIR -6 256 15 484 316 45 11 chr4 25758301 25758478 -158530184 - MIR SINE MIR -32 230 48 1608 140 31 71 chr4 25758486 25758824 -158529838 - MER1B DNA MER1_type 0 339 13 265 174 196 54 chr4 25759169 25759261 -158529401 + MIR SINE MIR 1 105 -157 807 145 8 8 chr4 25759871 25760002 -158528660 - FLAM_C SINE Alu -12 131 1 441 0 0 0 chr4 25761183 25761232 -158527430 + (TA)n Simple_repeat Simple_repeat 2 50 0 466 266 102 53 chr4 25762481 25762725 -158525937 + MIR SINE MIR 2 257 -5 2039 153 34 3 chr4 25763598 25763952 -158524710 + L1MC1 LINE L1 5407 5771 -562 1454 163 20 0 chr4 25764052 25764303 -158524359 + L1MC1 LINE L1 6073 6328 -5 387 227 11 11 chr4 25765791 25765879 -158522783 + L2 LINE L2 3225 3312 -1 404 180 22 22 chr4 25766341 25766430 -158522232 + L2 LINE L2 3225 3313 0 1032 219 115 29 chr4 25766683 25767030 -158521632 - L1MB8 LINE L1 -6 6172 5796 1662 172 0 26 chr4 25767047 25767350 -158521312 - AluJo SINE Alu -17 295 1 27 0 0 0 chr4 25767899 25767926 -158520736 + AT_rich Low_complexity Low_complexity 1 27 0 2104 127 3 3 chr4 25768480 25768827 -158519835 - AluSg SINE Alu 0 347 1 334 329 86 44 chr4 25769174 25769536 -158519126 - L1MDa LINE L1 -4514 1615 1239 638 313 64 57 chr4 25769549 25770396 -158518266 - L1MDa LINE L1 -4885 1234 382 702 331 115 24 chr4 25771861 25772369 -158516293 + L2 LINE L2 2761 3313 0 2838 193 24 60 chr4 25773253 25773967 -158514695 - LTR8 LTR ERV1 0 691 4 510 275 89 40 chr4 25773976 25774223 -158514439 - MLT1H LTR MaLR -273 276 18 235 303 49 56 chr4 25774349 25774491 -158514171 - MER5A DNA MER1_type -1 188 48 24 53 0 0 chr4 25774621 25774659 -158514003 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr4 25774732 25774753 -158513909 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr4 25775018 25775046 -158513616 + AT_rich Low_complexity Low_complexity 1 28 0 2105 114 0 3 chr4 25775051 25775341 -158513321 + AluSg SINE Alu 15 303 -7 25 31 0 0 chr4 25776234 25776266 -158512396 + AT_rich Low_complexity Low_complexity 1 32 0 180 0 0 0 chr4 25776306 25776326 -158512336 + (TTCA)n Simple_repeat Simple_repeat 4 23 0 251 109 0 0 chr4 25777716 25777762 -158510900 - LTR66 LTR ERVL -171 439 394 327 315 194 17 chr4 25778430 25778880 -158509782 - L2 LINE L2 -5 3267 2734 206 0 69 0 chr4 25779159 25779188 -158509474 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 913 228 35 0 chr4 25779350 25779552 -158509110 + MER3 DNA MER1_type 1 209 0 5511 89 112 38 chr4 25779781 25780867 -158507795 - MER11A LTR ERVK 0 1266 1 870 242 49 14 chr4 25781000 25781223 -158507439 - MIR SINE MIR 0 262 32 183 197 213 0 chr4 25782671 25782732 -158505930 - MIR SINE MIR -55 207 134 628 194 146 24 chr4 25782747 25782912 -158505750 - MIR SINE MIR -62 200 16 2598 96 31 6 chr4 25783411 25783766 -158504896 - THE1B LTR MaLR 0 364 1 422 356 22 0 chr4 25783898 25784078 -158504584 + MIR SINE MIR 70 253 -9 2444 67 0 0 chr4 25787321 25787621 -158501041 - AluY SINE Alu -11 300 1 184 409 18 0 chr4 25788110 25788220 -158500442 + L2 LINE L2 3183 3294 -19 2778 172 26 26 chr4 25788495 25789002 -158499660 - MLT2B2 LTR ERVL -8 507 1 2313 159 20 34 chr4 25789359 25789799 -158498863 - Tigger2a DNA MER2_type 0 434 1 21 0 0 0 chr4 25790013 25790034 -158498628 + AT_rich Low_complexity Low_complexity 1 21 0 3359 149 6 11 chr4 25790700 25791229 -158497433 + MER1A DNA MER1_type 1 526 -1 278 374 57 0 chr4 25791358 25791481 -158497181 + L2 LINE L2 3139 3268 -4 1771 168 50 6 chr4 25792437 25792776 -158495886 - THE1A LTR MaLR -1 354 1 479 187 19 19 chr4 25792812 25792919 -158495743 - L1MB8 LINE L1 -5 6173 6067 1665 244 58 60 chr4 25793584 25794120 -158494542 + MER90 LTR ERV1 74 608 -6 186 292 0 56 chr4 25794142 25794214 -158494448 - L2 LINE L2 -74 3239 3172 260 365 161 13 chr4 25794360 25794837 -158493825 - L2 LINE L2 -360 2954 2407 276 341 49 16 chr4 25795401 25795524 -158493138 + MIR SINE MIR 17 143 -65 218 250 92 0 chr4 25795650 25795726 -158492936 + MIR SINE MIR 125 207 -55 21 36 0 0 chr4 25795915 25795943 -158492719 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr4 25796025 25796054 -158492608 + AT_rich Low_complexity Low_complexity 1 29 0 1124 113 0 0 chr4 25796233 25796411 -158492251 + AluSg/x SINE Alu 132 309 0 219 321 50 20 chr4 25796827 25796945 -158491717 + MIR SINE MIR 30 149 -65 785 296 14 0 chr4 25797999 25798219 -158490443 - MER58A DNA MER1_type -1 223 1 728 303 31 13 chr4 25798637 25798865 -158489797 + MIR SINE MIR 18 249 -13 347 74 37 0 chr4 25799415 25799469 -158489193 + (TTTC)n Simple_repeat Simple_repeat 4 59 0 262 111 37 0 chr4 25799475 25799529 -158489133 - AluJo SINE Alu 0 302 247 1097 156 22 11 chr4 25799529 25799581 -158489081 - AluJo SINE Alu -126 186 136 321 26 0 0 chr4 25799581 25799619 -158489043 + (TA)n Simple_repeat Simple_repeat 2 39 0 1097 156 22 11 chr4 25799619 25799746 -158488916 - AluJo SINE Alu -176 136 5 22 35 0 0 chr4 25799883 25799912 -158488750 + AT_rich Low_complexity Low_complexity 1 29 0 1163 218 51 25 chr4 25800570 25800845 -158487817 + AluJo SINE Alu 1 282 -30 189 0 0 0 chr4 25800848 25800869 -158487793 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 2022 120 3 7 chr4 25801945 25802228 -158486434 - AluSx SINE Alu -28 284 3 22 0 0 0 chr4 25802229 25802251 -158486411 + AT_rich Low_complexity Low_complexity 1 22 0 718 119 28 0 chr4 25802597 25802706 -158485956 - MLT1B LTR MaLR 0 390 279 785 233 0 0 chr4 25802820 25802966 -158485696 + MER58B DNA MER1_type 193 338 -3 2077 128 0 7 chr4 25802998 25803296 -158485366 + AluSx SINE Alu 1 296 -16 335 352 40 8 chr4 25805139 25805386 -158483276 - MER113 DNA MER1_type? -8 513 259 4155 105 12 2 chr4 25805462 25806064 -158482598 - L1MA1 LINE L1 -11 6291 5684 29 84 0 0 chr4 25806125 25806196 -158482466 + AT_rich Low_complexity Low_complexity 1 71 0 32 43 0 0 chr4 25807533 25807579 -158481083 + AT_rich Low_complexity Low_complexity 1 46 0 1321 234 123 37 chr4 25807899 25808371 -158480291 + MLT1F LTR MaLR 34 555 0 250 321 62 9 chr4 25808586 25808698 -158479964 - MIR SINE MIR -86 176 59 183 327 0 0 chr4 25808687 25808742 -158479920 - MIR SINE MIR -150 112 58 * 1493 92 0 10 chr4 25808754 25808961 -158479701 - L1PA7 LINE L1 -1 6153 5949 24 0 0 0 chr4 25810062 25810086 -158478576 + AT_rich Low_complexity Low_complexity 1 24 0 2440 45 0 3 chr4 25810094 25810385 -158478277 + AluY SINE Alu 1 290 -21 3036 14 0 0 chr4 25810468 25810815 -158477847 - L1PA2 LINE L1 -3 6152 5806 1274 181 17 0 chr4 25811419 25811651 -158477011 - Tigger2 DNA MER2_type 0 2718 2483 1296 173 114 0 chr4 25811651 25811888 -158476774 + AluJo SINE Alu 1 264 -48 225 132 0 0 chr4 25811896 25811934 -158476728 + (GGAA)n Simple_repeat Simple_repeat 1 38 0 1031 174 42 14 chr4 25811934 25812147 -158476515 - Tigger2 DNA MER2_type -227 2491 2273 347 185 62 0 chr4 25812137 25812202 -158476460 - Tigger2 DNA MER2_type -2649 69 1 * 22 0 0 0 chr4 25812241 25812263 -158476399 + AT_rich Low_complexity Low_complexity 1 22 0 455 254 149 0 chr4 25812458 25812659 -158476003 - Charlie7 DNA MER1_type -257 2355 2125 2868 62 10 13 chr4 25812691 25813075 -158475587 - L1PA8A LINE L1 -13 6118 5736 309 273 91 32 chr4 25815928 25816082 -158472580 - MIR SINE MIR -13 249 87 357 358 16 0 chr4 25816363 25816486 -158472176 - MIR SINE MIR -132 130 6 2020 130 3 16 chr4 25816802 25817110 -158471552 + AluSx SINE Alu 2 305 -7 231 320 31 31 chr4 25817123 25817220 -158471442 + MIR SINE MIR 47 143 -119 2951 160 198 49 chr4 25819485 25820204 -158468458 - LTR1B LTR ERV1 0 826 1 211 301 106 26 chr4 25821193 25821306 -158467356 - MIR3 SINE MIR -45 163 42 189 277 138 21 chr4 25822147 25822241 -158466421 - MIR3 SINE MIR -3 205 101 1991 117 46 0 chr4 25822349 25822630 -158466032 + AluSg SINE Alu 1 294 -16 261 0 0 0 chr4 25822642 25822671 -158465991 + (ATGTG)n Simple_repeat Simple_repeat 2 30 0 2305 95 0 0 chr4 25822912 25823208 -158465454 + AluSc SINE Alu 1 296 -13 209 257 218 0 chr4 25823522 25823623 -158465039 - MIR SINE MIR -21 241 119 233 261 49 103 chr4 25823972 25824156 -158464506 - L2 LINE L2 -196 3076 2903 2580 182 9 6 chr4 25824595 25825061 -158463601 + MLT1C LTR MaLR 1 467 0 194 256 0 0 chr4 25825293 25825336 -158463326 - L2 LINE L2 -2 3311 3269 2507 68 0 3 chr4 25826100 25826408 -158462254 - AluY SINE Alu -4 307 1 285 313 50 0 chr4 25826421 25826501 -158462161 - L2 LINE L2 -15 3257 3174 313 361 42 42 chr4 25826585 25826729 -158461933 - MER91A DNA MER1_type -25 171 28 489 305 115 40 chr4 25827186 25827412 -158461250 + MIR SINE MIR 20 262 0 473 313 91 14 chr4 25827633 25827841 -158460821 - MIR SINE MIR -32 230 7 196 175 32 0 chr4 25829128 25829191 -158459471 + (TA)n Simple_repeat Simple_repeat 1 65 0 325 325 0 0 chr4 25829214 25829297 -158459365 - MIR SINE MIR -151 111 29 1899 234 153 93 chr4 25829798 25830413 -158458249 + MLT1E3 LTR MaLR 1 622 -2 202 273 0 18 chr4 25831484 25831539 -158457123 - L3 LINE CR1 -115 1462 1409 24 67 0 0 chr4 25832648 25832693 -158455969 + AT_rich Low_complexity Low_complexity 1 45 0 197 288 0 27 chr4 25833718 25833791 -158454871 - L2 LINE L2 -184 3088 3018 742 276 41 0 chr4 25834433 25834629 -158454033 + MIR SINE MIR 7 210 -52 1786 211 37 14 chr4 25835839 25835853 -158452809 - MLT2D LTR ERVL -27 437 425 528 59 59 0 chr4 25835853 25835955 -158452707 + (TCTA)n Simple_repeat Simple_repeat 3 110 0 1786 211 37 14 chr4 25835955 25836307 -158452355 - MLT2D LTR ERVL -39 425 3 6127 186 32 16 chr4 25836309 25837482 -158451180 - ERVL-D LTR ERVL -7 5757 4566 * 8969 184 42 10 chr4 25837480 25839126 -158449536 - ERVL LTR ERVL -1063 4701 3003 2895 210 42 11 chr4 25839115 25839179 -158449483 + ERVL LTR ERVL 1112 1173 -4591 * 267 31 0 0 chr4 25839179 25839211 -158449451 + (TTGG)n Simple_repeat Simple_repeat 4 35 0 2895 210 42 11 chr4 25839211 25839770 -158448892 + ERVL LTR ERVL 1173 1754 -4010 1084 215 152 4 chr4 25839759 25839996 -158448666 + ERVL LTR ERVL 1908 2179 -3585 * 21 57 0 0 chr4 25840350 25840385 -158448277 + AT_rich Low_complexity Low_complexity 1 35 0 617 295 8 60 chr4 25841882 25842015 -158446647 + MIR SINE MIR 1 116 -146 2044 136 0 13 chr4 25842015 25842323 -158446339 - AluSq SINE Alu -9 304 1 617 295 8 60 chr4 25842323 25842440 -158446222 + MIR SINE MIR 116 238 -24 276 274 85 114 chr4 25842463 25842664 -158445998 + MIR SINE MIR 52 246 -16 344 304 26 9 chr4 25842666 25842781 -158445881 - MER8 DNA MER2_type -122 117 1 7265 19 0 1 chr4 25843520 25844361 -158444301 - L1PA2 LINE L1 -4 6151 5312 324 314 25 25 chr4 25845273 25845391 -158443271 + MIR3 SINE MIR 85 202 -6 216 0 0 0 chr4 25845572 25845596 -158443066 + (T)n Simple_repeat Simple_repeat 1 24 0 984 273 52 17 chr4 25845680 25846024 -158442638 + Charlie1b DNA MER1_type 1 356 -167 255 322 34 34 chr4 25846218 25846336 -158442326 + MIR3 SINE MIR 85 202 -6 207 0 0 0 chr4 25846518 25846541 -158442121 + (T)n Simple_repeat Simple_repeat 1 23 0 1630 232 58 12 chr4 25846625 25847125 -158441537 + Charlie1b DNA MER1_type 1 523 0 491 376 15 18 chr4 25847247 25847521 -158441141 - MLT1J1 LTR MaLR -173 273 1 201 336 62 26 chr4 25847539 25847652 -158441010 + MIR SINE MIR 66 182 -80 1784 116 20 58 chr4 25848240 25848534 -158440128 + AluSq SINE Alu 1 283 -30 337 296 68 12 chr4 25849496 25849658 -158439004 - L2 LINE L2 0 3313 3143 345 327 122 5 chr4 25850368 25850573 -158438089 - L2 LINE L2 -213 3059 2831 22 0 0 0 chr4 25851604 25851626 -158437036 + AT_rich Low_complexity Low_complexity 1 22 0 30 0 0 0 chr4 25852077 25852107 -158436555 + AT_rich Low_complexity Low_complexity 1 30 0 6387 24 0 7 chr4 25853039 25854358 -158434304 + L1PA3 LINE L1 4694 6003 -152 752 214 41 81 chr4 25854514 25854784 -158433878 + MLT2B1 LTR ERVL 229 408 -6 429 317 150 25 chr4 25854981 25855549 -158433113 + L1M4 LINE L1 3796 4434 -1712 11991 40 16 0 chr4 25855723 25857205 -158431457 + L1P LINE L1 3745 5249 -897 1269 224 48 107 chr4 25857433 25858006 -158430656 - MER77 LTR ERV1 -5 600 89 1786 179 51 14 chr4 25858253 25858604 -158430058 - MLT1A1 LTR MaLR -1 364 1 229 221 208 13 chr4 25858672 25858749 -158429913 + MIR SINE MIR 2 93 -169 208 163 47 23 chr4 25858821 25858864 -158429798 + MER5B DNA MER1_type 18 61 -117 259 243 27 0 chr4 25858880 25858954 -158429708 - LTR67 LTR ERVL -7 550 475 198 370 37 37 chr4 25860098 25860233 -158428429 - L2 LINE L2 -1322 1992 1858 1792 206 73 67 chr4 25860336 25860439 -158428223 - L1MC3 LINE L1 -315 7470 7369 183 80 0 0 chr4 25860439 25860464 -158428198 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 1792 206 73 67 chr4 25860464 25861000 -158427662 - L1MC3 LINE L1 -416 7369 6827 644 221 32 0 chr4 25861013 25861171 -158427491 - L1MC3 LINE L1 -1855 5930 5768 * 3454 268 41 17 chr4 25861160 25862480 -158426182 - L1MC3 LINE L1 -1640 4506 3155 247 250 0 0 chr4 25864489 25864553 -158424109 + L1ME2 LINE L1 5803 5866 -300 439 221 35 62 chr4 25864577 25864722 -158423940 + L1ME2 LINE L1 5967 6107 -57 243 324 63 18 chr4 25865072 25865183 -158423479 + MIR SINE MIR 23 138 -70 298 264 28 2 chr4 25866328 25866442 -158422220 - MIR SINE MIR -63 145 38 24698 84 27 12 chr4 25866987 25870588 -158418074 - L1P LINE L1 -1335 4811 1158 2093 136 0 7 chr4 25870932 25871242 -158417420 + AluSx SINE Alu 1 308 -4 855 227 153 50 chr4 25871249 25871570 -158417092 + MER93b LTR ERV1 20 373 0 22 35 0 0 chr4 25872030 25872059 -158416603 + AT_rich Low_complexity Low_complexity 1 29 0 301 266 7 79 chr4 25872290 25872429 -158416233 - MIR SINE MIR -4 258 130 18671 53 55 2 chr4 25873765 25876205 -158412457 - L1P LINE L1 -3574 2572 2 1634 264 38 13 chr4 25876211 25876662 -158412000 + MER21B LTR ERV1 257 718 -145 2078 181 53 0 chr4 25878092 25878544 -158410118 - L1 LINE L1 -1553 4593 4118 1328 194 8 0 chr4 25878551 25878788 -158409874 - L1MC1 LINE L1 -50 6283 6045 21 82 0 0 chr4 25878789 25878838 -158409824 + AT_rich Low_complexity Low_complexity 1 49 0 702 265 73 66 chr4 25878892 25879288 -158409374 - L1ME LINE L1 -339 5782 5384 225 262 180 70 chr4 25879885 25880141 -158408521 + L2 LINE L2 2040 2323 -991 1059 235 53 15 chr4 25880426 25880766 -158407896 - L1ME LINE L1 -1750 4396 4044 191 260 20 0 chr4 25880768 25880818 -158407844 + L2 LINE L2 3220 3270 -2 362 257 194 29 chr4 25881004 25881179 -158407483 - MIR SINE MIR -1 261 58 2195 100 3 0 chr4 25881340 25881639 -158407023 + AluSg SINE Alu 1 300 -10 302 289 62 0 chr4 25881994 25882091 -158406571 + MIR SINE MIR 132 234 -28 259 307 31 16 chr4 25882385 25882512 -158406150 + L1MC/D LINE L1 5705 5835 -286 322 169 36 0 chr4 25882583 25882666 -158405996 + CT-rich Low_complexity Low_complexity 3 88 0 225 121 0 0 chr4 25882896 25882929 -158405733 + MLT1G1 LTR MaLR 1 33 -562 1593 259 204 2 chr4 25883002 25883497 -158405165 + MLT1G1 LTR MaLR 1 595 0 538 303 45 11 chr4 25883693 25883871 -158404791 - MIR SINE MIR -31 231 48 352 170 19 9 chr4 25884307 25884413 -158404249 + (TCTA)n Simple_repeat Simple_repeat 4 110 0 185 343 58 7 chr4 25885421 25885558 -158403104 + L2 LINE L2 2539 2682 -632 538 283 194 5 chr4 25885746 25885937 -158402725 + MLT1H LTR MaLR 1 227 -322 33 43 0 0 chr4 25886893 25886940 -158401722 + AT_rich Low_complexity Low_complexity 1 47 0 345 260 40 0 chr4 25886951 25887051 -158401611 + L1MC4a LINE L1 7354 7457 -351 506 206 69 74 chr4 25887054 25887243 -158401419 + L1MC4 LINE L1 7616 7803 -239 22 0 0 0 chr4 25887371 25887393 -158401269 + AT_rich Low_complexity Low_complexity 1 22 0 386 22 0 0 chr4 25887495 25887541 -158401121 + L1PA4 LINE L1 6012 6057 -98 415 231 64 13 chr4 25887646 25887862 -158400800 + L1M1 LINE L1 3361 3593 -3972 7206 193 35 70 chr4 25887864 25888390 -158400272 + L1M1 LINE L1 3424 3967 -3598 1808 137 20 17 chr4 25888390 25888690 -158399972 + AluSx SINE Alu 1 301 -11 7206 193 35 70 chr4 25888690 25890343 -158398319 + L1M1 LINE L1 3967 5532 -2033 14398 32 1 0 chr4 25890583 25893074 -158395588 - L1PA3 LINE L1 0 6155 3664 261 268 51 85 chr4 25893320 25893555 -158395107 + L1ME2 LINE L1 5349 5575 -589 235 292 137 15 chr4 25893675 25894011 -158394651 + L1ME2 LINE L1 5610 5980 -184 2496 57 3 0 chr4 25894913 25895209 -158393453 - AluY SINE Alu -6 305 9 21 0 0 0 chr4 25895650 25895671 -158392991 + AT_rich Low_complexity Low_complexity 1 21 0 24 85 0 0 chr4 25896809 25896868 -158391794 + AT_rich Low_complexity Low_complexity 1 59 0 2045 118 7 10 chr4 25897095 25897384 -158391278 + AluSp SINE Alu 14 301 -12 237 266 25 13 chr4 25898476 25898555 -158390107 + LTR67 LTR ERVL 461 540 -17 32 26 0 0 chr4 25898687 25898726 -158389936 + AT_rich Low_complexity Low_complexity 1 39 0 475 369 24 10 chr4 25898876 25899082 -158389580 - L3 LINE CR1 -23 1554 1346 3624 236 65 11 chr4 25899352 25900440 -158388222 - L1M4c LINE L1 -1433 4949 3803 * 4668 191 62 42 chr4 25900430 25901837 -158386825 - L1M4c LINE L1 -2969 3413 1934 1792 191 21 9 chr4 25901837 25902177 -158386485 + MER2 DNA MER2_type 1 344 0 4668 191 62 42 chr4 25902177 25902664 -158385998 - L1M4c LINE L1 -4448 1934 1458 42292 54 4 2 chr4 25902666 25908810 -158379852 + L1PA4 LINE L1 2 6151 -4 6746 175 73 10 chr4 25908823 25910170 -158378492 - L1M4c LINE L1 -4933 1451 19 1883 199 27 62 chr4 25910679 25911197 -158377465 - MLT1D LTR MaLR -5 500 1 23 0 0 0 chr4 25911474 25911497 -158377165 + AT_rich Low_complexity Low_complexity 1 23 0 1155 312 78 5 chr4 25911593 25911990 -158376672 + LTR16A LTR ERVL 25 450 0 3368 215 146 63 chr4 25912193 25913516 -158375146 - L1MC4a LINE L1 -20 7788 6356 207 0 0 0 chr4 25914696 25914719 -158373943 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 293 401 22 6 chr4 25915085 25915267 -158373395 - MIR3 SINE MIR -7 201 17 21 57 0 0 chr4 25915470 25915505 -158373157 + AT_rich Low_complexity Low_complexity 1 35 0 1165 308 84 47 chr4 25916132 25917213 -158371449 - L2 LINE L2 -8 3305 2193 278 50 25 0 chr4 25917467 25917507 -158371155 + (TTA)n Simple_repeat Simple_repeat 2 42 0 941 187 73 45 chr4 25920487 25920776 -158367886 - L1MC3 LINE L1 -14 7771 7475 258 244 39 0 chr4 25920836 25920914 -158367748 + MER117 DNA MER1_type 7 87 -110 22 80 0 0 chr4 25921007 25921057 -158367605 + AT_rich Low_complexity Low_complexity 1 50 0 2331 209 58 62 chr4 25922045 25922661 -158366001 + MLT1E2 LTR MaLR 1 614 -12 236 296 0 0 chr4 25923416 25923470 -158365192 + L2 LINE L2 3235 3288 -25 261 0 0 0 chr4 25925349 25925378 -158363284 + (TC)n Simple_repeat Simple_repeat 2 30 0 358 297 102 0 chr4 25925422 25925540 -158363122 - L2 LINE L2 -38 3275 3146 2152 92 4 0 chr4 25925752 25926065 -158362597 + AluSq SINE Alu 1 314 0 1705 200 32 109 chr4 25926192 25926561 -158362101 - MLT1F LTR MaLR 0 542 233 243 61 0 0 chr4 25926561 25926594 -158362068 + (CA)n Simple_repeat Simple_repeat 2 34 0 1705 200 32 109 chr4 25926594 25926809 -158361853 - MLT1F LTR MaLR -309 233 3 195 383 37 0 chr4 25928019 25928100 -158360562 - MIR SINE MIR -104 104 21 555 325 44 27 chr4 25931164 25931462 -158357200 - MLT1J LTR MaLR -45 466 164 855 289 50 42 chr4 25931462 25931813 -158356849 - LTR16C LTR ERVL 0 473 136 1446 108 0 10 chr4 25932461 25932655 -158356007 + AluSq SINE Alu 99 290 -23 1167 275 27 25 chr4 25933150 25933557 -158355105 + MLT1I LTR MaLR 1 408 -1 432 118 0 0 chr4 25934020 25934088 -158354574 + (TTCC)n Simple_repeat Simple_repeat 1 68 0 1601 202 10 19 chr4 25934240 25934552 -158354110 + AluJb SINE Alu 3 311 -1 188 316 118 0 chr4 25935939 25936015 -158352647 + MIR3 SINE MIR 72 156 -52 1364 221 148 74 chr4 25937189 25937248 -158351414 - MLT1E2 LTR MaLR 0 626 573 1692 180 3 10 chr4 25937248 25937537 -158351125 + AluJb SINE Alu 1 287 -25 231 36 0 0 chr4 25937537 25937565 -158351097 + (TA)n Simple_repeat Simple_repeat 2 29 0 1364 221 148 74 chr4 25937565 25938087 -158350575 - MLT1E2 LTR MaLR -52 574 1 270 327 30 0 chr4 25938432 25938533 -158350129 - MIR SINE MIR -21 241 138 2007 114 0 4 chr4 25938911 25939183 -158349479 - AluSx SINE Alu -20 292 22 21 0 0 0 chr4 25939292 25939313 -158349349 + AT_rich Low_complexity Low_complexity 1 21 0 180 313 21 0 chr4 25939438 25939486 -158349176 + L2 LINE L2 3214 3262 -10 2034 151 7 0 chr4 25939560 25939865 -158348797 + AluSx SINE Alu 1 307 -5 359 258 119 25 chr4 25940537 25940696 -158347966 - MIR SINE MIR -66 196 23 1933 297 66 3 chr4 25941894 25942543 -158346119 + MER69 DNA AcHobo 1 690 -536 1478 233 94 36 chr4 25942545 25943258 -158345404 + MER69 DNA AcHobo 1769 2522 -4 323 317 146 45 chr4 25943460 25943706 -158344956 - MLT1K LTR MaLR -308 280 10 217 327 105 20 chr4 25944063 25944216 -158344446 - MIR SINE MIR -45 217 52 1822 109 0 90 chr4 25945891 25946235 -158342427 - AluSx SINE Alu 0 316 1 915 232 14 0 chr4 25946322 25946542 -158342120 + L1MC1 LINE L1 6106 6328 -5 306 315 167 22 chr4 25946653 25946923 -158341739 + L1M4 LINE L1 2942 3250 -2896 * 392 353 80 29 chr4 25946911 25947186 -158341476 - HAL1b LINE L1 -676 672 384 25 31 0 0 chr4 25947686 25947718 -158340944 + AT_rich Low_complexity Low_complexity 1 32 0 282 121 45 15 chr4 25948718 25948784 -158339878 + CT-rich Low_complexity Low_complexity 4 71 0 991 160 12 0 chr4 25949069 25949238 -158339424 + MER5A DNA MER1_type 14 184 -5 1662 132 0 11 chr4 25949259 25949532 -158339130 + L1MA5 LINE L1 6024 6293 -7 210 309 101 50 chr4 25949746 25949885 -158338777 - L2 LINE L2 -108 3164 3019 370 327 33 33 chr4 25950764 25950978 -158337684 - MIR SINE MIR -34 228 15 633 110 0 0 chr4 25952756 25952847 -158335815 - FRAM SINE Alu -13 163 73 1768 170 3 14 chr4 25952951 25953245 -158335417 - AluJo SINE Alu -21 291 1 1270 197 39 36 chr4 25955576 25955906 -158332756 + MLT1A1 LTR MaLR 1 331 -34 22229 71 8 8 chr4 25956008 25960026 -158328636 + L1PA6 LINE L1 2144 6156 0 234 333 60 18 chr4 25960135 25960303 -158328359 - MARNA DNA Mariner 0 586 412 40290 52 7 2 chr4 25960914 25967026 -158321636 + L1PA4 LINE L1 11 6155 0 180 298 0 21 chr4 25967027 25967074 -158321588 + MIR SINE MIR 23 68 -194 1969 162 98 0 chr4 25967074 25967482 -158321180 + L1PA16 LINE L1 5707 6154 -12 208 118 20 39 chr4 25967785 25967836 -158320826 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 199 257 71 14 chr4 25967836 25967906 -158320756 + MIR SINE MIR 74 147 -115 218 254 132 44 chr4 25968021 25968135 -158320527 + MIR SINE MIR 116 239 -23 324 243 9 27 chr4 25969298 25969409 -158319253 - MLT1K LTR MaLR -29 559 451 352 345 53 23 chr4 25969539 25969710 -158318952 - MER5B DNA MER1_type -2 176 1 2288 167 14 9 chr4 25969753 25970183 -158318479 - L1PA16 LINE L1 0 6166 5735 220 333 0 0 chr4 25971688 25971745 -158316917 - L2 LINE L2 -18 3254 3198 370 320 23 8 chr4 25971762 25971890 -158316772 + MIR SINE MIR 12 141 -121 329 115 0 0 chr4 25972069 25972121 -158316541 - LTR33A LTR ERVL -33 490 439 253 192 82 27 chr4 25972501 25972574 -158316088 - LTR50 LTR ERVL -702 93 17 198 0 0 0 chr4 25973091 25973113 -158315549 + (CTTAG)n Simple_repeat Simple_repeat 4 25 0 212 360 137 24 chr4 25973444 25973655 -158315007 + L2 LINE L2 2434 2668 -646 227 203 16 31 chr4 25973965 25974029 -158314633 - MLT1I LTR MaLR -2 407 345 189 0 0 0 chr4 25976244 25976265 -158312397 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 203 204 91 0 chr4 25976282 25976326 -158312336 + L2 LINE L2 3266 3313 0 286 333 163 0 chr4 25976502 25976625 -158312037 + L2 LINE L2 3122 3264 -8 243 338 35 14 chr4 25977128 25977273 -158311389 + L2 LINE L2 3118 3265 -48 186 43 0 0 chr4 25977274 25977297 -158311365 + (TGAA)n Simple_repeat Simple_repeat 2 24 0 261 327 63 10 chr4 25977313 25977444 -158311218 + MIR SINE MIR 3 141 -67 1754 163 21 0 chr4 25977535 25977698 -158310964 - AluSx SINE Alu -17 295 122 198 0 0 0 chr4 25977698 25977720 -158310942 + (TTG)n Simple_repeat Simple_repeat 3 24 0 1754 163 21 0 chr4 25977720 25977845 -158310817 - AluSx SINE Alu -190 122 1 234 288 99 36 chr4 25978453 25978564 -158310098 - MIR SINE MIR -65 197 80 749 265 5 0 chr4 25978909 25979105 -158309557 - L1 LINE L1 -1153 4993 4797 1028 228 0 0 chr4 25979105 25979355 -158309307 + L1PB1 LINE L1 5085 5334 -812 5113 112 19 2 chr4 25979423 25980225 -158308437 + L1PB1 LINE L1 5336 6150 -1 299 305 85 8 chr4 25980587 25980705 -158307957 - MIR SINE MIR -12 250 124 793 158 0 158 chr4 25980716 25980912 -158307750 + AluJb SINE Alu 137 301 -11 1527 187 54 83 chr4 25982619 25983100 -158305562 - MLT1C LTR MaLR 0 467 1 502 301 81 25 chr4 25985031 25985267 -158303395 + MIR SINE MIR 14 262 0 1328 111 9 18 chr4 25985400 25985625 -158303037 + L1MA6 LINE L1 5372 5594 -706 521 105 12 0 chr4 25985725 25985811 -158302851 + L1MA6 LINE L1 5553 5639 -661 953 156 6 11 chr4 25985868 25986048 -158302614 + L1MA6 LINE L1 5620 5798 -502 207 200 0 0 chr4 25986048 25986083 -158302579 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 2783 152 19 12 chr4 25986083 25986598 -158302064 + L1MA6 LINE L1 5781 6299 -1 306 231 154 63 chr4 25987187 25987330 -158301332 - MER5A DNA MER1_type -1 188 33 2143 128 3 0 chr4 25987674 25987970 -158300692 + AluSx SINE Alu 1 297 -15 23975 65 8 0 chr4 25987971 25991224 -158297438 + L1P LINE L1 3 3282 -2864 854 200 0 54 chr4 25991380 25991565 -158297097 - FAM SINE Alu 0 175 1 1895 175 0 3 chr4 25991579 25991888 -158296774 - AluJo SINE Alu -4 308 1 1503 259 81 39 chr4 25991890 25992901 -158295761 - L1M4 LINE L1 -743 5639 4613 2005 61 4 29 chr4 25992913 25993192 -158295470 + L1PA8 LINE L1 5892 6163 -9 379 299 91 8 chr4 25993240 25993504 -158295158 - L1M4 LINE L1 -4919 1465 1180 296 294 34 34 chr4 25993520 25993685 -158294977 - MIR SINE MIR -43 219 60 4339 154 11 9 chr4 25994020 25995012 -158293650 - L1MA5A LINE L1 -265 6032 5039 484 280 8 0 chr4 25995099 25995231 -158293431 + MLT1H LTR MaLR 1 133 -416 23902 46 9 1 chr4 25995815 25999744 -158288918 + L1PA4 LINE L1 2200 6155 0 1895 155 38 18 chr4 25999751 26000151 -158288511 - L1MA4 LINE L1 -5 6295 5888 184 328 97 59 chr4 26000151 26000389 -158288273 + L2 LINE L2 2977 3223 -49 186 163 41 41 chr4 26000433 26000482 -158288180 - L3b LINE CR1 -251 1332 1284 2603 159 24 32 chr4 26002018 26002556 -158286106 - MER41B LTR ERV1 -11 599 103 301 89 0 0 chr4 26002605 26002650 -158286012 - MADE1 DNA Mariner 0 80 36 2703 297 52 10 chr4 26002684 26003623 -158285039 - L2 LINE L2 -299 3014 2035 9961 130 128 21 chr4 26003623 26005560 -158283102 + L1P LINE L1 13 2156 -3990 2288 86 0 10 chr4 26005852 26006153 -158282509 - AluSc SINE Alu -11 298 1 1536 231 77 28 chr4 26006360 26006896 -158281766 - L1ME1 LINE L1 -5 6230 5669 1594 183 10 10 chr4 26006918 26007151 -158281511 - MLT1C LTR MaLR -46 421 186 2144 125 10 3 chr4 26007151 26007462 -158281200 - AluSq SINE Alu 0 313 1 1594 183 10 10 chr4 26007462 26007539 -158281123 - MLT1C LTR MaLR -280 187 111 5632 246 86 48 chr4 26007541 26007697 -158280965 - L1ME1 LINE L1 -564 5671 5522 2317 80 0 13 chr4 26007697 26007998 -158280664 + AluY SINE Alu 1 297 -14 5632 246 86 48 chr4 26007998 26008325 -158280337 - L1ME1 LINE L1 -713 5522 5209 1094 219 39 108 chr4 26008325 26008740 -158279922 - MLT1B LTR MaLR -4 386 1 5632 246 86 48 chr4 26008740 26011370 -158277292 - L1ME1 LINE L1 -1026 5209 2424 1663 145 67 7 chr4 26011370 26011652 -158277010 + AluJb SINE Alu 1 299 -13 5632 246 86 48 chr4 26011652 26012050 -158276612 - L1ME1 LINE L1 -3811 2424 2043 1149 279 83 10 chr4 26012205 26012786 -158275876 - L1ME1 LINE L1 -4578 1818 1196 2547 252 88 14 chr4 26012817 26013790 -158274872 - L1ME1 LINE L1 -5316 1080 36 310 348 65 68 chr4 26013797 26014122 -158274540 + L2 LINE L2 2913 3236 -36 575 265 122 11 chr4 26015011 26015200 -158273462 - MER63A DNA MER1_type 0 210 1 685 311 121 5 chr4 26015310 26015725 -158272937 + LTR33A LTR ERVL 61 523 0 414 249 141 23 chr4 26016702 26016879 -158271783 + L2 LINE L2 3115 3312 -1 322 322 8 33 chr4 26017227 26017348 -158271314 + MIR SINE MIR 47 164 -98 7112 206 39 33 chr4 26018234 26020524 -158268138 - L1MA9 LINE L1 -39 6273 3960 2588 152 12 2 chr4 26020524 26020952 -158267710 - MSTB1 LTR MaLR 0 432 1 7112 206 39 33 chr4 26020952 26021467 -158267195 - L1MA9 LINE L1 -2352 3960 3450 287 296 34 4 chr4 26021467 26021658 -158267004 - MLT1I LTR MaLR -73 336 75 308 261 48 76 chr4 26021874 26022086 -158266576 - MER63 DNA MER1_type 0 1688 1 319 285 70 58 chr4 26023419 26023591 -158265071 - MIR3 SINE MIR -10 198 25 265 301 129 49 chr4 26023930 26024093 -158264569 - MIR SINE MIR -70 192 19 219 114 0 0 chr4 26024784 26024819 -158263843 + (TG)n Simple_repeat Simple_repeat 2 36 0 357 313 121 28 chr4 26025568 26025817 -158262845 + L2 LINE L2 3040 3311 -2 2023 203 27 11 chr4 26026642 26026834 -158261828 + MLT2B1 LTR ERVL 1 188 -332 183 80 0 0 chr4 26026834 26026859 -158261803 + (CAA)n Simple_repeat Simple_repeat 3 27 0 2023 203 27 11 chr4 26026859 26027104 -158261558 + MLT2B1 LTR ERVL 188 445 -75 517 226 0 20 chr4 26028481 26028583 -158260079 + FAM SINE Alu 1 100 -85 1506 152 0 0 chr4 26028608 26028864 -158259798 + Tigger4(Zombi) DNA MER2_type 2476 2731 0 567 322 29 37 chr4 26031690 26031935 -158256727 - MIR SINE MIR 0 262 20 26 30 0 0 chr4 26032118 26032151 -158256511 + AT_rich Low_complexity Low_complexity 1 33 0 1376 187 3 78 chr4 26032619 26032940 -158255722 - AluJb SINE Alu -15 297 1 1398 238 0 13 chr4 26033585 26033892 -158254770 - AluJo SINE Alu -9 303 1 2454 132 3 6 chr4 26033913 26034278 -158254384 - THE1B LTR MaLR 0 364 1 9574 116 19 4 chr4 26034278 26035781 -158252881 - THE1B-int LTR MaLR 0 1580 1 2057 150 34 6 chr4 26035781 26036135 -158252527 - THE1B LTR MaLR 0 364 1 258 386 63 48 chr4 26036158 26036554 -158252108 - L3 LINE CR1 -17 1560 1159 1653 107 0 9 chr4 26036714 26036939 -158251723 + AluSg/x SINE Alu 82 304 -8 702 334 139 23 chr4 26037217 26037909 -158250753 - L3 LINE CR1 -436 1141 370 850 142 29 30 chr4 26037912 26038367 -158250295 + GA-rich Low_complexity Low_complexity 1 454 0 215 189 0 0 chr4 26039080 26039117 -158249545 - MIR SINE MIR -116 146 110 187 278 83 14 chr4 26039233 26039305 -158249357 - MIR SINE MIR -179 83 7 291 310 11 0 chr4 26040444 26040531 -158248131 - L2 LINE L2 0 3313 3226 260 392 42 12 chr4 26040618 26040784 -158247878 - L2 LINE L2 -270 3043 2873 26 50 0 0 chr4 26040809 26040849 -158247813 + AT_rich Low_complexity Low_complexity 1 40 0 2197 100 3 0 chr4 26041120 26041410 -158247252 - AluSc SINE Alu -1 308 18 202 384 80 0 chr4 26041421 26041533 -158247129 - L2 LINE L2 -2 3311 3191 1731 260 35 12 chr4 26042149 26042637 -158246025 + LTR26 LTR ERV1 105 603 0 180 408 79 7 chr4 26042800 26042952 -158245710 + L2 LINE L2 3110 3272 0 509 278 111 5 chr4 26043840 26044056 -158244606 + L1ME LINE L1 5501 5739 -382 295 89 36 0 chr4 26044453 26044509 -158244153 + (TG)n Simple_repeat Simple_repeat 2 59 0 2242 114 7 3 chr4 26044757 26045065 -158243597 + AluSx SINE Alu 3 311 -1 376 129 97 0 chr4 26045065 26045189 -158243473 + GA-rich Low_complexity Low_complexity 2 137 0 249 250 0 0 chr4 26045517 26045573 -158243089 + CT-rich Low_complexity Low_complexity 1 56 0 386 170 184 27 chr4 26045594 26045741 -158242921 - L1MC5 LINE L1 -492 7469 7300 670 270 23 80 chr4 26045888 26046366 -158242296 - L1MC5 LINE L1 -727 7234 6784 467 235 28 62 chr4 26046422 26046601 -158242061 - L1MC5 LINE L1 -1178 6783 6611 215 119 0 104 chr4 26046920 26046987 -158241675 + (TTTTA)n Simple_repeat Simple_repeat 5 64 0 300 302 15 19 chr4 26047334 26047539 -158241123 + L1M4 LINE L1 3003 3206 -2940 1236 209 19 22 chr4 26047583 26047904 -158240758 + L1MC3 LINE L1 7460 7779 -6 233 255 0 0 chr4 26047917 26047964 -158240698 + (TG)n Simple_repeat Simple_repeat 2 48 0 1612 227 47 70 chr4 26047985 26048558 -158240104 - MER68 LTR ERV1 -2 560 1 1846 160 8 50 chr4 26048647 26049029 -158239633 + MLT2D LTR ERVL 1 366 -48 303 71 0 0 chr4 26049036 26049078 -158239584 + (TA)n Simple_repeat Simple_repeat 1 42 0 * 333 0 0 0 chr4 26049077 26049114 -158239548 + (GA)n Simple_repeat Simple_repeat 2 38 0 343 258 53 58 chr4 26049154 26049344 -158239318 - L1MC5 LINE L1 -1999 5809 5621 2039 144 0 7 chr4 26050245 26050573 -158238089 + AluSx SINE Alu 1 312 0 274 238 0 100 chr4 26050576 26050656 -158238006 + L2 LINE L2 3192 3263 -50 656 325 42 34 chr4 26051920 26052277 -158236385 + L2 LINE L2 2346 2705 -609 2692 137 67 2 chr4 26052280 26052725 -158235937 - L1PA16 LINE L1 -23 6143 5670 210 214 0 0 chr4 26052996 26053038 -158235624 + L2 LINE L2 2914 2955 -317 1354 226 45 23 chr4 26053327 26053726 -158234936 - L1MA9 LINE L1 -38 6274 5867 241 229 0 0 chr4 26054474 26054522 -158234140 + GA-rich Low_complexity Low_complexity 2 49 0 1438 185 3 63 chr4 26055131 26055450 -158233212 - AluJo SINE Alu -12 300 1 228 210 16 16 chr4 26055996 26056058 -158232604 + GA-rich Low_complexity Low_complexity 3 64 0 329 221 116 12 chr4 26056830 26056916 -158231746 - MIR3 SINE MIR -6 202 108 227 328 88 0 chr4 26057347 26057472 -158231190 - L3 LINE CR1 -45 1532 1397 359 188 12 0 chr4 26057479 26057559 -158231103 + L1MA8 LINE L1 6208 6288 -3 1671 184 14 3 chr4 26057624 26057918 -158230744 - AluJb SINE Alu 0 312 16 1105 294 172 24 chr4 26057919 26058575 -158230087 - L3 LINE CR1 -276 1301 549 28 0 0 0 chr4 26059169 26059197 -158229465 + AT_rich Low_complexity Low_complexity 1 28 0 603 168 18 0 chr4 26059213 26059380 -158229282 + (TA)n Simple_repeat Simple_repeat 1 170 0 274 315 136 12 chr4 26059484 26059646 -158229016 + MIR SINE MIR 79 260 -2 598 305 117 41 chr4 26061723 26062372 -158226290 - L2 LINE L2 -6 3307 2598 319 283 158 33 chr4 26062530 26062682 -158225980 - MIR SINE MIR -91 171 1 242 287 104 17 chr4 26062719 26062834 -158225828 + L2 LINE L2 3189 3313 0 234 0 0 0 chr4 26062881 26062907 -158225755 + (CAA)n Simple_repeat Simple_repeat 2 27 0 203 255 0 0 chr4 26064691 26064738 -158223924 + (TGAA)n Simple_repeat Simple_repeat 1 47 0 26 50 0 0 chr4 26064769 26064809 -158223853 + AT_rich Low_complexity Low_complexity 1 40 0 225 308 98 53 chr4 26066567 26066700 -158221962 + L2 LINE L2 2648 2786 -528 989 198 10 0 chr4 26067096 26067288 -158221374 - AluJo SINE Alu -1 311 118 217 213 0 0 chr4 26067334 26067381 -158221281 + L2 LINE L2 3263 3309 -4 3835 158 68 34 chr4 26068046 26068850 -158219812 - L1MC3 LINE L1 -172 7613 6782 515 203 17 25 chr4 26069030 26069148 -158219514 + L1MC3 LINE L1 6669 6785 -1000 455 290 148 17 chr4 26069148 26069324 -158219338 + LTR1 LTR ERV1 28 226 -559 1054 251 139 29 chr4 26069373 26069899 -158218763 - LTR1B LTR ERV1 -210 616 33 2724 222 30 8 chr4 26069904 26070526 -158218136 - L1MC3 LINE L1 -1000 6785 6150 3815 281 63 20 chr4 26070611 26073429 -158215233 - L1MC3 LINE L1 -745 5401 2959 6191 138 7 27 chr4 26073442 26074594 -158214068 - L1MA4A LINE L1 -4 6299 5169 5403 168 28 77 chr4 26074596 26074802 -158213860 - L1MA4A LINE L1 -1220 4926 4712 1484 193 15 15 chr4 26074802 26075072 -158213590 - AluJo SINE Alu -37 275 6 5403 168 28 77 chr4 26075072 26076242 -158212420 - L1MA4A LINE L1 -1434 4712 3617 272 153 68 17 chr4 26076342 26076401 -158212261 + MLT1A2 LTR MaLR 313 374 0 713 295 69 10 chr4 26076487 26076792 -158211870 - MER113 DNA MER1_type? -50 471 149 795 268 121 0 chr4 26076792 26077016 -158211646 - MIR SINE MIR -1 261 11 291 224 0 0 chr4 26127440 26127516 -158161146 + A-rich Low_complexity Low_complexity 1 76 0 21 0 0 0 chr4 26127946 26127967 -158160695 + AT_rich Low_complexity Low_complexity 1 21 0 183 222 44 0 chr4 26129550 26129595 -158159067 - L2 LINE L2 0 3272 3226 4253 32 0 19 chr4 26129873 26130401 -158158261 - L1PA4 LINE L1 -137 6018 5501 697 331 115 24 chr4 26133012 26133520 -158155142 - L2 LINE L2 0 3313 2761 687 316 64 57 chr4 26134987 26135834 -158152828 + L1MEd LINE L1 382 1234 -4885 347 331 86 44 chr4 26135847 26136209 -158152453 + L1MEd LINE L1 1239 1615 -4514 226 293 9 38 chr4 26137221 26137327 -158151335 - MIR SINE MIR -56 206 104 2366 108 0 0 chr4 26139413 26139718 -158148944 - AluSx SINE Alu -7 305 1 790 303 106 25 chr4 26140589 26140684 -158147978 + L2 LINE L2 2440 2526 -787 1947 105 11 22 chr4 26140684 26140961 -158147701 + AluSx SINE Alu 29 302 -10 790 303 106 25 chr4 26140961 26141498 -158147164 + L2 LINE L2 2526 3125 -188 584 276 77 63 chr4 26141590 26141876 -158146786 - L2 LINE L2 -4 3309 3020 325 171 244 0 chr4 26141876 26141958 -158146704 + L2 LINE L2 3208 3309 -4 2362 52 42 0 chr4 26141976 26142265 -158146397 + AluY SINE Alu 1 301 -10 294 203 0 0 chr4 26144072 26144131 -158144531 + L2 LINE L2 3212 3270 -2 699 320 66 8 chr4 26144874 26145308 -158143354 + LTR33 LTR ERVL 3 490 -31 693 303 54 8 chr4 26145558 26145799 -158142863 - MIR SINE MIR 0 262 11 914 219 53 27 chr4 26146551 26147009 -158141653 - Charlie4a DNA MER1_type -5 503 7 2064 120 3 0 chr4 26147634 26147945 -158140717 + AluSq SINE Alu 1 312 0 1881 132 0 84 chr4 26148606 26148939 -158139723 - AluSx SINE Alu -7 305 1 21 57 0 0 chr4 26149234 26149269 -158139393 + AT_rich Low_complexity Low_complexity 1 35 0 581 251 80 15 chr4 26149735 26149998 -158138664 + L1M1 LINE L1 3314 3593 -3972 7227 192 35 69 chr4 26150000 26150526 -158138136 + L1M1 LINE L1 3424 3966 -3599 1748 132 21 18 chr4 26150526 26150829 -158137833 + AluSx SINE Alu 1 304 0 7227 192 35 69 chr4 26150829 26152479 -158136183 + L1M1 LINE L1 3966 5532 -2033 22 56 0 0 chr4 26152686 26152722 -158135940 + AT_rich Low_complexity Low_complexity 1 36 0 14454 31 0 0 chr4 26152722 26155216 -158133446 - L1PA3 LINE L1 0 6155 3664 277 278 52 65 chr4 26155462 26155692 -158132970 + L1ME2 LINE L1 5349 5575 -589 235 298 131 9 chr4 26155812 26156148 -158132514 + L1ME2 LINE L1 5610 5980 -184 826 69 0 0 chr4 26157050 26157152 -158131510 - AluY SINE Alu -9 302 201 313 187 11 11 chr4 26157938 26158029 -158130633 + GA-rich Low_complexity Low_complexity 5 95 0 2223 106 3 0 chr4 26158127 26158429 -158130233 - AluSq SINE Alu 0 313 11 226 171 14 43 chr4 26158503 26158573 -158130089 + (TA)n Simple_repeat Simple_repeat 2 69 0 2500 65 0 7 chr4 26159359 26159667 -158128995 - AluY SINE Alu -5 306 1 257 160 147 27 chr4 26160915 26160990 -158127672 + L1MA5 LINE L1 6217 6300 0 704 88 18 0 chr4 26162310 26162423 -158126239 + (TAGA)n Simple_repeat Simple_repeat 4 118 0 181 83 56 0 chr4 26162428 26162464 -158126198 + (CATA)n Simple_repeat Simple_repeat 1 38 0 483 302 93 0 chr4 26163028 26163346 -158125316 + LTR43 LTR ERV1 201 453 -59 243 292 77 83 chr4 26163367 26163535 -158125127 + MIR SINE MIR 91 257 -5 414 190 101 0 chr4 26163612 26163691 -158124971 + MER31B LTR ERV1 1 87 -379 1078 69 49 113 chr4 26163702 26163905 -158124757 - L1PA5 LINE L1 -1 6153 5964 2394 38 0 0 chr4 26163906 26164193 -158124469 + L1PA5 LINE L1 5659 5945 -209 844 169 70 0 chr4 26164194 26164366 -158124296 + MER31A LTR ERV1 84 267 -218 1050 190 9 0 chr4 26164520 26164736 -158123926 + L1MA9 LINE L1 6095 6312 0 2303 209 24 10 chr4 26164764 26165266 -158123396 + L1MC1 LINE L1 5815 6323 -10 379 228 43 0 chr4 26165302 26165394 -158123268 + L1MB4 LINE L1 6053 6148 -32 320 323 10 10 chr4 26166342 26166438 -158122224 - LTR16A LTR ERVL -295 155 60 2962 166 71 0 chr4 26166863 26167413 -158121249 + LTR51 LTR ERV1 1 589 -82 335 275 17 17 chr4 26167632 26167752 -158120910 - MARNA DNA Mariner -347 239 120 449 257 134 29 chr4 26167832 26168003 -158120659 + MER5A DNA MER1_type 1 189 0 252 345 14 49 chr4 26168947 26169089 -158119573 + MIR SINE MIR 48 184 -78 208 295 0 0 chr4 26170192 26170270 -158118392 + (TA)n Simple_repeat Simple_repeat 1 78 0 730 270 202 21 chr4 26170790 26171304 -158117358 + L1MC4a LINE L1 5307 5913 -1895 1328 237 104 23 chr4 26171338 26171811 -158116851 + L1MC4a LINE L1 7297 7807 -1 1530 177 39 14 chr4 26171818 26172101 -158116561 + AluJo SINE Alu 1 290 -22 312 233 14 0 chr4 26174260 26174333 -158114329 + L2 LINE L2 2159 2232 -1082 401 342 0 0 chr4 26174505 26174666 -158113996 + L2 LINE L2 2159 2319 -995 271 289 87 10 chr4 26174774 26174878 -158113784 + L2 LINE L2 3202 3313 0 805 249 97 37 chr4 26175029 26175356 -158113306 - MER77 LTR ERV1 -4 601 277 23 33 0 0 chr4 26175697 26175727 -158112935 + AT_rich Low_complexity Low_complexity 1 30 0 199 363 37 57 chr4 26175818 26176118 -158112544 + L2 LINE L2 2365 2658 -656 702 183 0 0 chr4 26176199 26176319 -158112343 + AluSq/x SINE Alu 1 120 -193 202 111 0 28 chr4 26176330 26176366 -158112296 + (GAAAA)n Simple_repeat Simple_repeat 4 38 0 276 248 51 22 chr4 26177581 26177718 -158110944 - L1ME4a LINE L1 -3 6118 5978 31 26 0 0 chr4 26177731 26177769 -158110893 + AT_rich Low_complexity Low_complexity 1 38 0 2507 100 27 14 chr4 26177773 26178143 -158110519 + THE1C LTR MaLR 1 375 0 228 323 121 0 chr4 26178261 26178459 -158110203 - L1ME4a LINE L1 -391 5730 5509 326 273 106 31 chr4 26180226 26180387 -158108275 - MIR SINE MIR -38 224 52 1291 197 62 31 chr4 26181188 26181477 -158107185 - AluJo SINE Alu -14 298 1 25 31 0 0 chr4 26181523 26181555 -158107107 + AT_rich Low_complexity Low_complexity 1 32 0 181 250 96 0 chr4 26181802 26181854 -158106808 + L2 LINE L2 3211 3267 -5 233 429 14 14 chr4 26181968 26182108 -158106554 + L3 LINE CR1 1437 1576 -1 209 108 27 0 chr4 26182628 26182665 -158105997 + GA-rich Low_complexity Low_complexity 4 41 0 705 326 100 19 chr4 26182765 26183194 -158105468 + L2 LINE L2 2832 3295 -18 1573 208 22 25 chr4 26185187 26185553 -158103109 - MLT1A1 LTR MaLR 0 365 1 736 214 90 55 chr4 26186004 26186205 -158102457 - MIR SINE MIR -1 261 54 460 213 0 0 chr4 26186941 26187021 -158101641 + Tigger4(Zombi) DNA MER2_type 1 80 -2651 2749 134 2 22 chr4 26187028 26187474 -158101188 + Tigger4(Zombi) DNA MER2_type 2295 2731 0 325 373 69 36 chr4 26187586 26187833 -158100829 - L2 LINE L2 -252 3061 2807 234 274 161 24 chr4 26188660 26188784 -158099878 - MIR SINE MIR -12 250 110 2094 159 14 6 chr4 26188822 26189175 -158099487 - LTR32 LTR ERVL -6 465 110 505 145 167 43 chr4 26189175 26189313 -158099349 - LTR32 LTR ERVL -306 165 11 845 269 48 38 chr4 26190066 26190464 -158098198 + L1ME3A LINE L1 5637 6038 -132 1625 179 3 14 chr4 26191197 26191509 -158097153 + AluSx SINE Alu 1 309 0 21 0 0 0 chr4 26191823 26191844 -158096818 + AT_rich Low_complexity Low_complexity 1 21 0 577 329 119 9 chr4 26192547 26192766 -158095896 + MIR SINE MIR 2 244 -18 24 0 0 0 chr4 26192767 26192791 -158095871 + AT_rich Low_complexity Low_complexity 1 24 0 1940 150 4 0 chr4 26193785 26194059 -158094603 + AluSx SINE Alu 2 276 -36 434 33 17 0 chr4 26194061 26194121 -158094541 + (TAAA)n Simple_repeat Simple_repeat 2 62 0 7004 175 60 20 chr4 26194835 26196231 -158092431 + L1 LINE L1 10 1460 -6105 4647 166 47 16 chr4 26196209 26197224 -158091438 + L1 LINE L1 5183 6229 -1336 * 354 322 86 12 chr4 26198011 26198256 -158090406 - L1ME LINE L1 -304 5817 5555 722 207 20 0 chr4 26198377 26198527 -158090135 - MER97a DNA MER1_type? -712 182 30 261 322 122 9 chr4 26198600 26198715 -158089947 - L2 LINE L2 -1 3271 3144 526 356 90 23 chr4 26199408 26199886 -158088776 - L2 LINE L2 0 3313 2804 325 326 51 23 chr4 26201666 26201759 -158086903 + MIR SINE MIR 81 170 -92 785 266 18 14 chr4 26201759 26201977 -158086685 - MER20 DNA MER1_type 0 219 1 325 326 51 23 chr4 26201977 26202058 -158086604 + MIR SINE MIR 170 260 -2 708 10 20 59 chr4 26202470 26202571 -158086091 - L1PA4 LINE L1 0 6155 6059 1199 14 0 0 chr4 26202571 26202714 -158085948 + L1PA4 LINE L1 5785 5927 -228 598 242 64 0 chr4 26203077 26203234 -158085428 + MER58A DNA MER1_type 28 194 -30 1054 215 33 84 chr4 26203235 26203714 -158084948 + MLT1C LTR MaLR 1 466 -1 1081 270 59 28 chr4 26204156 26204578 -158084084 + MSTB2 LTR MaLR 23 457 0 416 332 87 12 chr4 26204578 26204831 -158083831 - L1ME LINE L1 -459 5711 5440 25 0 0 0 chr4 26205146 26205171 -158083491 + AT_rich Low_complexity Low_complexity 1 25 0 309 295 29 19 chr4 26205401 26205506 -158083156 + L2 LINE L2 2986 3091 -181 425 313 93 56 chr4 26206393 26206715 -158081947 + L2 LINE L2 2945 3283 -30 2137 136 30 38 chr4 26206715 26207082 -158081580 - THE1B LTR MaLR 0 364 1 425 313 93 56 chr4 26207082 26207114 -158081548 + L2 LINE L2 3283 3312 -1 225 0 0 0 chr4 26208571 26208596 -158080066 + (T)n Simple_repeat Simple_repeat 1 25 0 468 0 0 0 chr4 26208763 26208815 -158079847 + (CA)n Simple_repeat Simple_repeat 1 52 0 255 388 41 0 chr4 26209291 26209389 -158079273 - L2 LINE L2 -12 3301 3200 626 315 131 33 chr4 26209489 26209965 -158078697 - L2 LINE L2 0 3313 2742 245 29 29 0 chr4 26209965 26209999 -158078663 + (TATAA)n Simple_repeat Simple_repeat 5 39 0 626 315 131 33 chr4 26209999 26210179 -158078483 - L2 LINE L2 -571 2742 2581 309 230 81 46 chr4 26210209 26210343 -158078319 + MLT1A2 LTR MaLR 3 150 -215 834 169 14 0 chr4 26210351 26210493 -158078169 + FRAM SINE Alu 1 142 -34 210 118 0 0 chr4 26210500 26210534 -158078128 + (T)n Simple_repeat Simple_repeat 1 34 0 689 161 71 109 chr4 26210545 26210756 -158077906 + MLT1A2 LTR MaLR 172 374 0 341 333 79 12 chr4 26210766 26210931 -158077731 - L2 LINE L2 -38 3275 3100 192 343 55 0 chr4 26210975 26211048 -158077614 - L2 LINE L2 -178 3094 3018 435 303 112 62 chr4 26211531 26212033 -158076629 + L2 LINE L2 2790 3313 0 750 255 41 0 chr4 26212238 26212434 -158076228 - MER58A DNA MER1_type -20 204 1 362 276 168 16 chr4 26212505 26212690 -158075972 - MIR SINE MIR -15 247 35 2054 125 0 7 chr4 26214183 26214494 -158074168 - AluSg SINE Alu 0 310 2 317 273 16 55 chr4 26214554 26214682 -158073980 - MIR SINE MIR -106 156 34 307 205 77 13 chr4 26216571 26216649 -158072013 + MLT1L LTR MaLR 15 97 -518 1428 174 48 65 chr4 26217292 26217486 -158071176 - MER2 DNA MER2_type 0 345 158 1052 158 15 10 chr4 26217486 26217682 -158070980 + L1PB2 LINE L1 5953 6149 -2 1428 174 48 65 chr4 26217682 26217838 -158070824 - MER2 DNA MER2_type -187 158 1 2042 313 109 22 chr4 26218192 26219464 -158069198 + L2 LINE L2 1919 3305 -8 2065 152 3 0 chr4 26220361 26220663 -158067999 + AluSx SINE Alu 2 304 -8 2417 83 0 3 chr4 26221300 26221602 -158067060 - AluY SINE Alu -8 303 3 271 305 121 32 chr4 26221935 26222125 -158066537 + L2 LINE L2 2708 2914 -400 3804 41 2 0 chr4 26222147 26222608 -158066054 - L1PA4 LINE L1 -3 6152 5691 221 220 40 0 chr4 26222884 26222934 -158065728 + L2 LINE L2 3262 3313 0 386 304 82 6 chr4 26222941 26223112 -158065550 + MIR SINE MIR 28 211 -51 210 250 46 93 chr4 26223223 26223331 -158065331 - MIR SINE MIR -48 214 112 707 197 0 7 chr4 26223538 26223675 -158064987 - MLT1D LTR MaLR -369 136 1 312 275 76 15 chr4 26224143 26224274 -158064388 + MIR SINE MIR 114 252 -10 180 0 0 0 chr4 26224406 26224426 -158064236 + (TA)n Simple_repeat Simple_repeat 1 20 0 180 0 0 0 chr4 26224425 26224445 -158064217 + (CA)n Simple_repeat Simple_repeat 2 21 0 485 320 195 29 chr4 26225870 26226461 -158062201 + L2 LINE L2 1665 2353 -961 295 352 25 92 chr4 26226866 26227181 -158061481 + L2 LINE L2 2869 3162 -110 260 297 20 0 chr4 26227646 26227747 -158060915 + Charlie7 DNA MER1_type 2510 2612 0 240 284 0 0 chr4 26227810 26227884 -158060778 + A-rich Low_complexity Low_complexity 1 74 0 195 354 15 0 chr4 26228011 26228076 -158060586 + L2 LINE L2 2715 2780 -534 257 288 168 56 chr4 26228365 26228490 -158060172 + L2 LINE L2 3134 3272 0 443 183 32 11 chr4 26229213 26229306 -158059356 - MSTB LTR MaLR -329 97 3 556 236 21 36 chr4 26229520 26229660 -158059002 + MIR SINE MIR 11 148 -114 466 222 9 9 chr4 26230553 26230661 -158058001 - MIR SINE MIR -4 258 151 223 226 0 19 chr4 26230749 26230802 -158057860 + (TA)n Simple_repeat Simple_repeat 1 52 0 2150 115 45 25 chr4 26231045 26231402 -158057260 + THE1B LTR MaLR 1 364 0 201 311 143 34 chr4 26231403 26231522 -158057140 - L2 LINE L2 -226 3087 2956 * 288 310 106 0 chr4 26231521 26231634 -158057028 - MIR SINE MIR -126 136 12 210 405 63 0 chr4 26231954 26232033 -158056629 + L2 LINE L2 3160 3243 -29 411 314 0 7 chr4 26232054 26232194 -158056468 + L2 LINE L2 2269 2407 -907 213 337 33 0 chr4 26232261 26232353 -158056309 + L2 LINE L2 2551 2645 -669 363 296 63 39 chr4 26232458 26232664 -158055998 + L2 LINE L2 2272 2482 -832 206 295 64 0 chr4 26233245 26233323 -158055339 + L2 LINE L2 3190 3272 0 2166 107 0 41 chr4 26233987 26234304 -158054358 + AluSx SINE Alu 1 304 -8 451 293 26 0 chr4 26234360 26234476 -158054186 - L2 LINE L2 -1 3271 3153 392 278 76 97 chr4 26237009 26237428 -158051234 - L1M2 LINE L1 -5468 1381 755 471 301 207 5 chr4 26238429 26238622 -158050040 + MIR SINE MIR 17 248 -14 227 279 0 29 chr4 26238653 26238721 -158049941 + L2 LINE L2 3236 3301 -12 613 292 245 2 chr4 26238723 26239131 -158049531 - L2 LINE L2 -1 3312 2806 512 221 152 44 chr4 26239441 26239567 -158049095 + MIR SINE MIR 8 119 -143 2401 98 0 0 chr4 26239567 26239873 -158048789 + AluSx SINE Alu 1 306 -6 512 221 152 44 chr4 26239873 26239950 -158048712 + MIR SINE MIR 119 233 -29 225 169 0 42 chr4 26240262 26240333 -158048329 + (TATAA)n Simple_repeat Simple_repeat 1 68 0 689 335 30 0 chr4 26240756 26240986 -158047676 - MIR SINE MIR -25 237 1 414 274 54 36 chr4 26240986 26241152 -158047510 + MIR SINE MIR 40 208 -54 524 207 103 45 chr4 26241331 26241534 -158047128 - MIR SINE MIR -15 247 38 253 317 106 19 chr4 26241566 26241670 -158046992 - MER5A DNA MER1_type -5 184 72 486 263 33 0 chr4 26241717 26241869 -158046793 - L1MA10 LINE L1 0 6334 6178 741 108 102 54 chr4 26241897 26242063 -158046599 - L1MC2 LINE L1 -37 6307 6134 1042 215 48 4 chr4 26242087 26242315 -158046347 + MLT1B LTR MaLR 153 390 0 422 263 151 20 chr4 26242364 26242516 -158046146 + MER5A DNA MER1_type 12 183 -6 1866 142 3 37 chr4 26242516 26242839 -158045823 + AluJo SINE Alu 1 312 0 239 250 0 0 chr4 26243319 26243375 -158045287 - MIR SINE MIR -110 152 97 2247 105 0 3 chr4 26243996 26244302 -158044360 - AluSq SINE Alu -8 305 1 236 235 111 12 chr4 26245319 26245400 -158043262 - L2 LINE L2 -41 3272 3184 1099 235 163 56 chr4 26245511 26245948 -158042714 - MLT1H LTR MaLR -7 542 46 1784 212 11 6 chr4 26245948 26246311 -158042351 + MLT1A1 LTR MaLR 1 365 0 1099 235 163 56 chr4 26246311 26246359 -158042303 - MLT1H LTR MaLR -503 46 5 391 234 16 70 chr4 26246382 26246510 -158042152 - MIR SINE MIR -140 122 2 379 336 137 38 chr4 26246538 26247320 -158041342 - L2 LINE L2 -177 3095 2224 1813 152 173 14 chr4 26247321 26247690 -158040972 + MSTA LTR MaLR 1 428 0 779 252 111 9 chr4 26247741 26247967 -158040695 - MIR SINE MIR -12 250 2 2441 66 0 13 chr4 26248465 26248768 -158039894 + AluY SINE Alu 1 299 -12 258 305 142 21 chr4 26248903 26249044 -158039618 - MIR SINE MIR 0 262 105 380 263 97 46 chr4 26249872 26250047 -158038615 - MIR SINE MIR -2 260 77 314 321 84 15 chr4 26250200 26250398 -158038264 + MIR SINE MIR 12 214 -36 266 358 67 8 chr4 26250987 26251107 -158037555 + L2 LINE L2 3146 3272 0 213 250 0 0 chr4 26252738 26252786 -158035876 + (TA)n Simple_repeat Simple_repeat 1 48 0 221 339 55 18 chr4 26254030 26254139 -158034523 - MIR3 SINE MIR -28 180 68 536 333 58 42 chr4 26254171 26254618 -158034044 + L2 LINE L2 2855 3308 -5 382 352 83 5 chr4 26255906 26256099 -158032563 + MIR SINE MIR 35 242 -20 1980 172 8 0 chr4 26256129 26256490 -158032172 + L1PA13 LINE L1 4647 5010 -1136 6206 96 8 6 chr4 26256639 26257767 -158030895 + L1PA13 LINE L1 5029 6160 -3 210 56 111 0 chr4 26257934 26257988 -158030674 + (TA)n Simple_repeat Simple_repeat 2 61 0 431 263 8 42 chr4 26258186 26258304 -158030358 - MLT1I LTR MaLR -200 209 96 369 329 40 63 chr4 26258319 26258620 -158030042 - L2 LINE L2 -352 2962 2669 230 224 0 0 chr4 26260339 26260388 -158028274 + L2 LINE L2 3199 3247 -66 663 276 152 9 chr4 26260410 26260620 -158028042 - MIR SINE MIR -20 242 3 244 328 0 0 chr4 26260639 26260700 -158027962 + L2 LINE L2 3194 3254 -18 1810 158 50 3 chr4 26261041 26261364 -158027298 + MER2 DNA MER2_type 8 345 0 424 237 72 17 chr4 26262494 26262635 -158026027 + MIR SINE MIR 22 162 -65 2550 105 6 3 chr4 26263005 26263357 -158025305 - THE1B LTR MaLR -11 353 1 406 250 76 0 chr4 26263677 26263769 -158024893 - MER81 DNA DNA 0 114 16 319 267 0 67 chr4 26263807 26263897 -158024765 - MER81 DNA DNA -30 84 1 1953 197 11 0 chr4 26264663 26265024 -158023638 - MLT1A1 LTR MaLR 0 365 1 685 200 21 7 chr4 26266715 26266855 -158021807 + FLAM_C SINE Alu 2 143 0 2283 80 3 0 chr4 26267418 26267704 -158020958 - AluY SINE Alu -24 287 1 525 309 173 12 chr4 26268126 26268456 -158020206 - L2 LINE L2 -4 3309 2927 267 274 153 16 chr4 26268476 26268600 -158020062 - MIR SINE MIR -72 190 50 1529 215 82 32 chr4 26268781 26269222 -158019440 - MLT1C LTR MaLR -4 463 1 210 328 42 50 chr4 26269556 26269675 -158018987 - L2 LINE L2 -8 3264 3147 5321 212 49 28 chr4 26269944 26270813 -158017849 + Charlie1a DNA MER1_type 7 920 -1841 2269 109 3 0 chr4 26270813 26271125 -158017537 - AluSp SINE Alu 0 313 1 5321 212 49 28 chr4 26271125 26271673 -158016989 + Charlie1a DNA MER1_type 920 1455 0 256 381 0 31 chr4 26271730 26271827 -158016835 - L2 LINE L2 -26 3246 3153 25 31 0 0 chr4 26272117 26272149 -158016513 + AT_rich Low_complexity Low_complexity 1 32 0 325 270 70 20 chr4 26272169 26272269 -158016393 - L1MEc LINE L1 -3987 2228 2124 714 179 185 12 chr4 26272360 26272522 -158016140 - MER20 DNA MER1_type 0 219 30 342 261 0 0 chr4 26272522 26272587 -158016075 - MER20 DNA MER1_type -154 65 1 701 291 78 38 chr4 26272813 26273755 -158014907 - L1MEc LINE L1 -4531 1688 795 207 0 0 0 chr4 26273918 26273941 -158014721 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 236 178 257 30 chr4 26274100 26274201 -158014461 - MER5C DNA MER1_type -200 124 1 2080 113 3 0 chr4 26274863 26275145 -158013517 + AluSp SINE Alu 1 283 -30 835 286 74 80 chr4 26275198 26275673 -158012989 + MLT1K LTR MaLR 4 475 -113 263 232 242 11 chr4 26275895 26275990 -158012672 + L2 LINE L2 3197 3313 0 426 269 50 8 chr4 26276008 26276127 -158012535 - L2 LINE L2 0 3313 3190 1961 173 12 6 chr4 26276127 26276456 -158012206 + MLT1A1 LTR MaLR 1 331 -34 195 116 93 23 chr4 26276464 26276507 -158012155 + L2 LINE L2 3161 3206 -107 459 290 147 28 chr4 26276645 26276931 -158011731 - LTR33 LTR ERVL -39 482 163 27 62 0 0 chr4 26277106 26277154 -158011508 + AT_rich Low_complexity Low_complexity 1 48 0 182 389 0 0 chr4 26277372 26277444 -158011218 - L2 LINE L2 -683 2631 2560 223 287 129 20 chr4 26278175 26278276 -158010386 - L2 LINE L2 -1 3312 3201 1539 181 7 11 chr4 26278434 26278711 -158009951 - MLT1A1 LTR MaLR 0 365 90 1407 233 3 23 chr4 26278724 26279024 -158009638 + MLT1A1 LTR MaLR 72 365 0 550 172 11 0 chr4 26279024 26279107 -158009555 - MLT1A1 LTR MaLR -272 93 10 203 328 16 0 chr4 26279232 26279293 -158009369 + L2 LINE L2 3210 3271 -1 1710 243 21 56 chr4 26279381 26279896 -158008766 + MLT1D LTR MaLR 1 497 -8 405 288 71 50 chr4 26280463 26280883 -158007779 + L1MEc LINE L1 1315 1743 -4653 993 274 68 58 chr4 26281092 26281559 -158007103 + MLT1H LTR MaLR 71 542 -7 1257 122 0 0 chr4 26281838 26282018 -158006644 - AluSg/x SINE Alu -2 307 128 233 157 59 20 chr4 26283003 26283054 -158005608 + LTR64 LTR ERVK 192 244 -314 1286 163 54 19 chr4 26283185 26283517 -158005145 + LTR54 LTR ERV1 1 394 -116 24 85 0 0 chr4 26284105 26284164 -158004498 + AT_rich Low_complexity Low_complexity 1 59 0 1984 118 7 11 chr4 26284391 26284670 -158003992 + AluSp SINE Alu 14 291 -22 237 266 25 13 chr4 26285770 26285849 -158002813 + LTR67 LTR ERVL 461 540 -17 32 26 0 0 chr4 26285981 26286020 -158002642 + AT_rich Low_complexity Low_complexity 1 39 0 475 369 24 10 chr4 26286170 26286376 -158002286 - L3 LINE CR1 -23 1554 1346 652 204 49 7 chr4 26287753 26287895 -158000767 + MIR SINE MIR 108 255 -7 292 357 36 0 chr4 26288126 26288266 -158000396 - MIR SINE MIR 0 262 118 270 289 0 11 chr4 26288282 26288372 -158000290 + LTR48B LTR ERV1 1 89 -555 758 186 82 52 chr4 26288391 26288622 -158000040 + MER39 LTR ERV1 296 533 -174 1494 200 73 0 chr4 26290084 26290399 -157998263 - MER58B DNA MER1_type -3 338 1 712 247 121 8 chr4 26291278 26291505 -157997157 + MIR SINE MIR 6 262 0 439 332 5 37 chr4 26293210 26293394 -157995268 + MIR SINE MIR 8 188 -65 297 0 0 0 chr4 26293853 26293886 -157994776 + (TG)n Simple_repeat Simple_repeat 2 34 0 21 36 0 0 chr4 26294583 26294611 -157994051 + AT_rich Low_complexity Low_complexity 1 28 0 249 57 0 0 chr4 26294744 26294779 -157993883 + (TG)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr4 26295026 26295047 -157993615 + AT_rich Low_complexity Low_complexity 1 21 0 1519 121 59 3 chr4 26295255 26295560 -157993102 + MSTC LTR MaLR 1 416 -12 247 271 57 14 chr4 26295811 26295881 -157992781 - L2 LINE L2 -60 3253 3181 1013 162 14 121 chr4 26296173 26296463 -157992199 + L1PB4 LINE L1 5885 6143 -13 351 0 0 0 chr4 26296903 26296942 -157991720 + (TG)n Simple_repeat Simple_repeat 2 40 0 217 281 74 83 chr4 26297138 26297259 -157991403 - L2 LINE L2 0 3272 3153 188 298 48 0 chr4 26298025 26298109 -157990553 + MIR SINE MIR 96 183 -79 232 367 63 13 chr4 26298265 26298423 -157990239 + MIR3 SINE MIR 41 206 -2 397 164 87 48 chr4 26298453 26298557 -157990105 - MLT1A1 LTR MaLR -253 112 5 406 272 0 10 chr4 26298710 26298813 -157989849 + MIR3 SINE MIR 76 177 -31 243 211 8 154 chr4 26298905 26299028 -157989634 - MER94 DNA DNA -4 130 26 184 261 114 87 chr4 26299471 26299655 -157989007 + L2 LINE L2 2132 2320 -994 237 316 109 11 chr4 26300766 26300940 -157987722 + Charlie8 DNA MER1_type 45 235 -2182 3156 187 50 23 chr4 26301049 26301733 -157986929 + MER52A LTR ERV1 404 1105 -650 4709 167 30 0 chr4 26301736 26302562 -157986100 + MER52A LTR ERV1 905 1755 0 1955 46 0 77 chr4 26303657 26303918 -157984744 + AluY SINE Alu 53 293 -18 1436 158 7 52 chr4 26304029 26304301 -157984361 + AluJo SINE Alu 5 264 -48 1210 245 24 12 chr4 26304409 26304748 -157983914 - MLT1A1 LTR MaLR 0 365 23 356 232 77 65 chr4 26305071 26305226 -157983436 + MIR SINE MIR 95 251 -11 328 327 61 0 chr4 26307672 26307915 -157980747 + L1ME3A LINE L1 5327 5582 -584 234 0 0 0 chr4 26307936 26307962 -157980700 + (CA)n Simple_repeat Simple_repeat 2 27 0 228 67 0 0 chr4 26308108 26308138 -157980524 + (GA)n Simple_repeat Simple_repeat 1 30 0 293 213 37 93 chr4 26309319 26309427 -157979235 - MIR SINE MIR -7 255 154 418 273 49 49 chr4 26309524 26309729 -157978933 + L1ME3A LINE L1 5632 5836 -334 381 111 0 0 chr4 26309748 26309802 -157978860 - MLT1A1 LTR MaLR 0 365 312 604 121 0 10 chr4 26309802 26309901 -157978761 + MER4A LTR ERV1 1 98 -566 1863 114 3 23 chr4 26309956 26310255 -157978407 + MER4A LTR ERV1 372 664 0 1399 217 7 7 chr4 26310255 26310564 -157978098 - MLT1A1 LTR MaLR -50 315 7 607 236 116 21 chr4 26310576 26310809 -157977853 + L1ME3A LINE L1 5857 6111 -59 210 143 0 0 chr4 26312212 26312247 -157976415 + (TCC)n Simple_repeat Simple_repeat 3 37 0 1032 144 6 0 chr4 26312389 26312570 -157976092 + L1MA6 LINE L1 6086 6267 -33 1132 204 83 4 chr4 26312585 26312654 -157976008 + AluJo SINE Alu 49 111 -201 387 0 0 0 chr4 26312654 26312697 -157975965 + (TAAA)n Simple_repeat Simple_repeat 1 43 0 1132 204 83 4 chr4 26312697 26312857 -157975805 + AluJo SINE Alu 111 296 -16 1677 170 154 16 chr4 26313047 26313423 -157975239 + MSTA LTR MaLR 1 428 0 1772 203 34 10 chr4 26313424 26313808 -157974854 - MSTD LTR MaLR 0 396 4 597 320 90 50 chr4 26313925 26314475 -157974187 + L2 LINE L2 2712 3294 -19 1909 172 45 12 chr4 26314765 26315184 -157973478 + L1MB4 LINE L1 5622 6054 -126 353 205 107 0 chr4 26315194 26315306 -157973356 + L1MC/D LINE L1 5203 5326 -820 283 188 0 0 chr4 26315312 26315360 -157973302 + L1MC/D LINE L1 5490 5537 -796 7986 184 41 27 chr4 26315364 26316720 -157971942 + L1MA9 LINE L1 3415 4836 -1476 2100 181 56 7 chr4 26316720 26317128 -157971534 - MSTA LTR MaLR 0 428 1 7986 184 41 27 chr4 26317128 26318240 -157970422 + L1MA9 LINE L1 4836 5930 -382 2230 153 52 2 chr4 26318241 26318646 -157970016 - MSTA LTR MaLR -3 425 1 745 175 11 33 chr4 26318646 26318829 -157969833 + L1MA9 LINE L1 5924 6102 -210 38695 68 4 1 chr4 26318835 26324815 -157963847 + L1PA5 LINE L1 13 6011 -143 1551 186 6 125 chr4 26375987 26376466 -157912196 - LTR8 LTR ERV1 -269 422 1 572 226 86 86 chr4 26376466 26376501 -157912161 - MER39 LTR ERV1 -134 573 539 2387 61 0 3 chr4 26376501 26376794 -157911868 - AluY SINE Alu -19 292 1 572 226 86 86 chr4 26376794 26377072 -157911590 - MER39 LTR ERV1 -167 540 260 471 143 71 0 chr4 26377354 26377438 -157911224 + Tigger1 DNA MER2_type 1516 1605 -813 294 29 0 0 chr4 26377439 26377474 -157911188 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 3737 144 3 2 chr4 26377477 26378095 -157910567 + Tigger1 DNA MER2_type 1800 2418 0 1471 110 60 60 chr4 26378665 26378984 -157909678 - L1P4 LINE L1 -579 5587 5269 1372 169 23 19 chr4 26378985 26379251 -157909411 + Tigger3(Golem) DNA MER2_type 2771 3037 0 216 259 0 0 chr4 26379263 26379344 -157909318 + (TA)n Simple_repeat Simple_repeat 2 82 0 1730 175 15 18 chr4 26379371 26379714 -157908948 - MLT2C1 LTR ERVL -53 344 3 495 381 47 27 chr4 26379717 26380016 -157908646 - L2 LINE L2 -107 3165 2861 276 319 56 21 chr4 26380227 26380556 -157908106 + L2 LINE L2 2810 3224 -89 230 326 52 37 chr4 26381085 26381220 -157907442 + MIR SINE MIR 126 262 0 200 122 0 189 chr4 26382206 26382280 -157906382 - L2 LINE L2 -181 3091 3032 437 307 73 59 chr4 26382395 26382682 -157905980 - MER115 DNA AcHobo -182 511 221 2043 224 76 52 chr4 26382830 26382860 -157905802 - MER21B LTR ERV1 -57 806 778 1702 161 102 15 chr4 26382860 26383195 -157905467 + THE1B LTR MaLR 1 364 0 11697 95 2 0 chr4 26383195 26384772 -157903890 + THE1B-int LTR MaLR 1 1580 0 2202 136 33 22 chr4 26384772 26385132 -157903530 + THE1B LTR MaLR 1 364 0 2043 224 76 52 chr4 26385132 26385836 -157902826 - MER21B LTR ERV1 -84 779 52 365 328 0 24 chr4 26387711 26387836 -157900826 + L2 LINE L2 3190 3311 -2 1949 157 28 0 chr4 26388536 26388823 -157899839 - AluJb SINE Alu -16 296 2 301 327 62 0 chr4 26388824 26388937 -157899725 - L2 LINE L2 -8 3264 3145 335 202 11 0 chr4 26389420 26389509 -157899153 + (TA)n Simple_repeat Simple_repeat 2 91 0 322 332 11 106 chr4 26390392 26390675 -157897987 - L2 LINE L2 0 3272 3017 470 279 106 8 chr4 26390801 26391038 -157897624 + MIR SINE MIR 3 262 0 383 195 35 71 chr4 26392309 26392422 -157896240 + MIR SINE MIR 73 181 -81 2390 238 67 18 chr4 26393332 26394270 -157894392 + L1M4 LINE L1 3856 4839 -1307 717 58 0 0 chr4 26394271 26394358 -157894304 - AluY SINE Alu -20 291 205 1245 197 74 54 chr4 26394359 26394835 -157893827 + L1M4 LINE L1 4832 5317 -841 347 285 131 0 chr4 26394841 26394971 -157893691 - MIR SINE MIR -66 196 50 185 108 27 0 chr4 26395112 26395149 -157893513 + (CA)n Simple_repeat Simple_repeat 2 39 0 381 158 49 6 chr4 26395177 26395341 -157893321 + (CA)n Simple_repeat Simple_repeat 1 171 0 245 154 44 0 chr4 26395366 26395457 -157893205 + (CA)n Simple_repeat Simple_repeat 1 95 0 491 234 54 0 chr4 26395583 26395694 -157892968 - MER45A DNA AcHobo -26 152 36 674 209 29 7 chr4 26395727 26395866 -157892796 + FRAM SINE Alu 20 161 -15 36782 71 16 14 chr4 26396158 26398254 -157890408 + L1PA5 LINE L1 1 2091 -4063 881 62 0 0 chr4 26398254 26398367 -157890295 + L1PA5 LINE L1 6039 6151 -3 36782 71 16 14 chr4 26398367 26402399 -157886263 + L1PA5 LINE L1 2091 6147 -7 223 318 163 0 chr4 26402894 26403023 -157885639 + MIR SINE MIR 77 226 -36 241 326 45 11 chr4 26403916 26404005 -157884657 + MIR SINE MIR 9 100 -162 449 320 102 15 chr4 26404085 26404282 -157884380 + MIR SINE MIR 4 217 -45 2153 121 0 0 chr4 26404299 26404596 -157884066 + AluSq SINE Alu 1 297 -16 1877 159 3 19 chr4 26405142 26405501 -157883161 - L1M2 LINE L1 -569 5743 5391 649 276 93 32 chr4 26405501 26405747 -157882915 - MIR SINE MIR 0 262 2 1578 164 23 49 chr4 26406399 26406734 -157881928 - THE1C LTR MaLR 0 375 50 2295 124 22 28 chr4 26406734 26407098 -157881564 - THE1B LTR MaLR 0 364 3 1578 164 23 49 chr4 26407098 26407147 -157881515 - THE1C LTR MaLR -325 50 1 25 31 0 0 chr4 26407641 26407673 -157880989 + AT_rich Low_complexity Low_complexity 1 32 0 2053 133 21 42 chr4 26407970 26408352 -157880310 - THE1C LTR MaLR -1 374 1 255 292 0 0 chr4 26408368 26408433 -157880229 + (CATA)n Simple_repeat Simple_repeat 3 67 0 614 219 0 16 chr4 26408600 26408723 -157879939 + FLAM_A SINE Alu 2 122 -11 2221 130 11 22 chr4 26411059 26411427 -157877235 - THE1B LTR MaLR 0 364 1 11395 107 4 1 chr4 26411427 26413003 -157875659 - THE1B-int LTR MaLR 0 1580 1 2247 136 8 19 chr4 26413003 26413371 -157875291 - THE1B LTR MaLR 0 364 1 181 302 48 16 chr4 26413878 26413941 -157874721 - L2 LINE L2 -3 3269 3205 440 313 111 15 chr4 26415536 26415760 -157872902 - MIR SINE MIR -19 243 2 1335 187 46 89 chr4 26415765 26416160 -157872502 + MLT1B LTR MaLR 5 382 -8 1194 76 10 26 chr4 26416788 26417094 -157871568 + (TAGA)n Simple_repeat Simple_repeat 1 301 0 999 233 82 48 chr4 26418627 26418979 -157869683 - MLT1A1 LTR MaLR 0 365 2 694 183 35 28 chr4 26419271 26419413 -157869249 + MIR SINE MIR 38 180 -82 22 0 0 0 chr4 26419446 26419468 -157869194 + AT_rich Low_complexity Low_complexity 1 22 0 354 293 120 20 chr4 26419487 26419637 -157869025 - MIR SINE MIR -26 236 72 1824 211 114 71 chr4 26419908 26420530 -157868132 + MLT1E1 LTR MaLR 3 651 -3 2531 57 0 13 chr4 26420537 26420852 -157867810 + AluY SINE Alu 1 311 0 183 435 0 0 chr4 26420933 26421025 -157867637 - MIR3 SINE MIR -21 187 96 591 277 98 18 chr4 26421520 26421744 -157866918 + MIR SINE MIR 13 254 -8 2141 109 10 0 chr4 26423202 26423495 -157865167 + AluSp SINE Alu 1 296 -17 376 282 34 51 chr4 26424000 26424117 -157864545 + L2 LINE L2 3179 3293 -20 676 263 44 31 chr4 26424121 26424349 -157864313 - MIR SINE MIR -19 243 13 537 267 27 63 chr4 26424655 26424876 -157863786 - MIR SINE MIR -1 261 49 201 254 0 36 chr4 26424981 26425036 -157863626 - MIR SINE MIR -136 72 20 724 112 0 0 chr4 26425042 26425193 -157863469 - AluSp/q SINE Alu 0 337 187 1491 183 55 55 chr4 26425671 26426038 -157862624 - MLT1A2 LTR MaLR -7 367 1 3958 172 69 17 chr4 26426353 26427138 -157861524 + LTR1B LTR ERV1 1 826 0 621 179 342 15 chr4 26428178 26428365 -157860297 - MLT2B2 LTR ERVL 0 515 265 489 100 62 0 chr4 26428365 26428445 -157860217 + PABL_A LTR ERV1 1 85 -575 9856 87 6 1 chr4 26428445 26429903 -157858759 - L1P LINE L1 -1479 4667 3203 4027 85 9 7 chr4 26429903 26430478 -157858184 + PABL_B LTR ERV1 92 667 0 1497 176 11 0 chr4 26430478 26430740 -157857922 - MLT2B2 LTR ERVL -250 265 1 307 259 54 27 chr4 26430835 26430982 -157857680 - HAL1 LINE L1 -476 2031 1881 1873 142 40 32 chr4 26431133 26431479 -157857183 - THE1B LTR MaLR -15 349 1 1072 267 32 19 chr4 26431484 26431855 -157856807 - HAL1 LINE L1 -831 1676 1301 354 329 19 6 chr4 26431922 26432080 -157856582 - MLT1E LTR MaLR -433 160 1 1951 58 11 4 chr4 26433355 26433615 -157855047 - L1PA7 LINE L1 -361 5793 5532 2782 62 0 8 chr4 26433618 26433976 -157854686 + L1PA7 LINE L1 5795 6149 -5 281 102 41 0 chr4 26433976 26434025 -157854637 + (TATG)n Simple_repeat Simple_repeat 3 53 0 262 327 89 10 chr4 26434228 26434329 -157854333 + L2 LINE L2 3187 3295 -18 555 302 40 24 chr4 26434651 26434903 -157853759 + MIR SINE MIR 4 259 -3 312 290 16 75 chr4 26434977 26435163 -157853499 + MLT1J2 LTR MaLR 52 226 -183 209 377 61 9 chr4 26435831 26435945 -157852717 - MIR SINE MIR -124 138 19 237 370 36 7 chr4 26436397 26436535 -157852127 + L2 LINE L2 3168 3309 -4 1527 161 57 28 chr4 26436749 26437103 -157851559 + THE1C LTR MaLR 12 375 0 313 355 30 15 chr4 26438102 26438302 -157850360 + HERV16 LTR ERVL 480 682 -5082 288 365 24 42 chr4 26438560 26438894 -157849768 + HERV16 LTR ERVL 1091 1418 -4346 7120 129 32 8 chr4 26439201 26440404 -157848258 - Tigger3b DNA MER2_type 0 1231 1 260 358 50 17 chr4 26440479 26440599 -157848063 + HERV16 LTR ERVL 2876 2999 -1997 1267 337 63 27 chr4 26440680 26441834 -157846828 + HERV16 LTR ERVL 3150 4345 -1419 416 363 32 7 chr4 26442222 26442500 -157846162 + HERV16 LTR ERVL 5043 5327 -327 1888 155 132 5 chr4 26442895 26443275 -157845387 - MSTA LTR MaLR 0 428 1 354 313 119 0 chr4 26443581 26443715 -157844947 + LTR67 LTR ERVL 408 557 0 2535 255 43 7 chr4 26443794 26444519 -157844143 - L1ME2 LINE L1 -6 6158 5408 2236 95 7 3 chr4 26444525 26444821 -157843841 + THE1B LTR MaLR 68 364 0 3922 257 72 8 chr4 26444821 26446302 -157842360 - L1ME2 LINE L1 -745 5401 3836 257 103 0 0 chr4 26446317 26446356 -157842306 - L1PB1 LINE L1 -23 6128 6090 * 6179 153 23 9 chr4 26446353 26448087 -157840575 - L1PB1 LINE L1 0 6151 4389 185 0 40 0 chr4 26448087 26448112 -157840550 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 6179 153 23 9 chr4 26448112 26448314 -157840348 - L1PB1 LINE L1 -1762 4389 4191 592 275 179 23 chr4 26448317 26448703 -157839959 - L1MA3 LINE L1 -2300 3846 3401 725 160 0 0 chr4 26448710 26448835 -157839827 + L1MA3 LINE L1 3826 3950 -2196 42301 37 21 2 chr4 26448865 26454897 -157833765 + L1PA2 LINE L1 2 6155 0 6663 185 25 9 chr4 26454909 26456338 -157832324 + L1MA3 LINE L1 3951 5401 -745 4737 154 17 19 chr4 26456343 26457183 -157831479 + L1MA3 LINE L1 5447 6284 -21 385 272 115 10 chr4 26457268 26457581 -157831081 - L1ME2 LINE L1 -2789 3357 3012 2509 105 39 3 chr4 26457675 26458037 -157830625 + THE1C LTR MaLR 1 375 0 472 301 21 43 chr4 26458135 26458414 -157830248 - L1ME2 LINE L1 -3361 2785 2513 12613 214 30 17 chr4 26458467 26460548 -157828114 - L1MEc LINE L1 -1241 4974 2862 1415 75 0 0 chr4 26460548 26460735 -157827927 - L1PA5 LINE L1 0 6154 5968 12613 214 30 17 chr4 26460735 26461970 -157826692 - L1MEc LINE L1 -3353 2862 1644 242 209 66 55 chr4 26462404 26462495 -157826167 - L1ME LINE L1 -509 5612 5521 22 0 0 0 chr4 26463042 26463064 -157825598 + AT_rich Low_complexity Low_complexity 1 22 0 3621 109 31 7 chr4 26463273 26463814 -157824848 - L1PA13 LINE L1 -25 6138 5585 3495 145 35 2 chr4 26463823 26464648 -157824014 + L1PA13 LINE L1 4733 5575 -588 1107 324 34 43 chr4 26465775 26466642 -157822020 + L2 LINE L2 2445 3313 0 188 370 14 75 chr4 26468370 26468516 -157820146 - L2 LINE L2 0 3272 3136 339 241 51 0 chr4 26468551 26468630 -157820032 + MER7A DNA MER2_type 1 81 -265 2609 154 24 50 chr4 26468653 26468795 -157819867 - L1PA16 LINE L1 -4 6162 6018 2560 45 0 19 chr4 26468795 26469109 -157819553 - AluY SINE Alu 0 311 4 2154 123 7 0 chr4 26469109 26469410 -157819252 - AluSg SINE Alu -7 303 1 2609 154 24 50 chr4 26469410 26469805 -157818857 - L1PA16 LINE L1 -146 6020 5638 213 319 90 24 chr4 26469984 26470150 -157818512 + L3 LINE CR1 580 756 -821 25 95 0 0 chr4 26470721 26470795 -157817867 + AT_rich Low_complexity Low_complexity 1 74 0 1445 214 0 21 chr4 26470800 26471123 -157817539 + AluJb SINE Alu 1 317 0 761 261 128 28 chr4 26471350 26471710 -157816952 - L2 LINE L2 -1 3312 2917 805 291 160 27 chr4 26471731 26472205 -157816457 + L3 LINE CR1 958 1494 -83 2262 111 0 3 chr4 26472360 26472666 -157815996 - AluSg SINE Alu -5 305 1 2075 115 4 7 chr4 26473126 26473452 -157815210 + AluSg SINE Alu 4 328 0 216 364 0 0 chr4 26473589 26473666 -157814996 + L2 LINE L2 3196 3272 0 231 261 31 0 chr4 26473685 26473750 -157814912 - MARNA DNA Mariner -112 474 408 228 245 144 50 chr4 26473958 26474097 -157814565 + L2 LINE L2 2520 2671 -643 461 296 26 20 chr4 26474127 26474279 -157814383 + MIR SINE MIR 59 211 -51 386 261 106 67 chr4 26474596 26474776 -157813886 + L2 LINE L2 3085 3271 -1 1902 149 88 25 chr4 26475958 26476355 -157812307 + MER65A LTR ERV1 1 422 -23 329 325 41 35 chr4 26476396 26476565 -157812097 - MIR SINE MIR -87 175 6 2528 81 29 0 chr4 26476590 26476935 -157811727 + THE1A LTR MaLR 1 355 0 5740 108 11 1 chr4 26476936 26477732 -157810930 + THE1A-int LTR MaLR 2 805 -775 3258 96 5 0 chr4 26477738 26478166 -157810496 + THE1A-int LTR MaLR 1151 1580 0 2622 88 6 0 chr4 26478166 26478519 -157810143 + THE1A LTR MaLR 1 355 0 255 307 0 23 chr4 26478519 26478607 -157810055 + (CATATA)n Simple_repeat Simple_repeat 1 86 0 359 370 14 7 chr4 26480522 26480660 -157808002 - L2 LINE L2 0 3272 3134 2212 116 0 7 chr4 26480678 26480980 -157807682 + AluSx SINE Alu 1 300 -12 248 174 20 0 chr4 26481177 26481241 -157807421 - MLT1I LTR MaLR -26 541 307 2336 51 3 0 chr4 26481341 26481634 -157807028 - L1PA4 LINE L1 0 6155 5862 5226 25 0 0 chr4 26481634 26482409 -157806253 + L1PA4 LINE L1 5091 5865 -290 303 268 23 19 chr4 26482474 26482577 -157806085 - MLT1I LTR MaLR -258 151 53 406 296 130 0 chr4 26483661 26483823 -157804839 - MIR SINE MIR -14 248 66 979 309 38 16 chr4 26484022 26484388 -157804274 + HAL1 LINE L1 261 634 -1873 593 239 77 66 chr4 26484416 26484780 -157803882 + HAL1 LINE L1 2131 2498 -9 394 271 56 39 chr4 26484898 26485046 -157803616 + MIR3 SINE MIR 14 166 -42 1103 45 0 0 chr4 26485543 26485677 -157802985 + L1PA5 LINE L1 6008 6141 -13 450 0 0 0 chr4 26485679 26485729 -157802933 + (TA)n Simple_repeat Simple_repeat 1 50 0 318 283 127 73 chr4 26486067 26486275 -157802387 - MLT1J1 LTR MaLR -114 332 100 1897 194 29 5 chr4 26486275 26486656 -157802006 + MLT1B LTR MaLR 1 390 0 318 283 127 73 chr4 26486656 26486761 -157801901 - MLT1J1 LTR MaLR -346 100 2 183 244 52 122 chr4 26487746 26487861 -157800801 - L2 LINE L2 -86 3227 3121 * 450 284 69 27 chr4 26487856 26488141 -157800521 - L2 LINE L2 -559 2755 2422 1017 200 26 0 chr4 26488348 26488543 -157800119 + LTR32 LTR ERVL 15 214 -257 4240 79 32 29 chr4 26488543 26489589 -157799073 - MER11A LTR ERVK 0 1266 1 1182 220 20 4 chr4 26489589 26489834 -157798828 + LTR32 LTR ERVL 209 457 -14 862 189 0 7 chr4 26491502 26491655 -157797007 - MER61A LTR ERV1 -191 152 1 197 219 37 122 chr4 26492114 26492196 -157796466 + MIR SINE MIR 118 192 -70 630 306 47 35 chr4 26492197 26492455 -157796207 + MIR SINE MIR 2 262 0 282 287 160 13 chr4 26492500 26492650 -157796012 - MIR SINE MIR -2 260 89 190 371 52 26 chr4 26492810 26492926 -157795736 - MIR SINE MIR -28 234 116 459 313 67 33 chr4 26493885 26494132 -157794530 + MIR SINE MIR 8 257 -5 684 301 56 5 chr4 26494850 26495066 -157793596 - MIR SINE MIR -20 242 16 268 289 87 19 chr4 26497448 26497552 -157791110 + L2 LINE L2 3158 3268 -4 * 336 274 24 65 chr4 26497521 26497645 -157791017 - L2 LINE L2 -3 3310 3192 231 170 0 0 chr4 26497688 26497735 -157790927 + (TGAA)n Simple_repeat Simple_repeat 3 49 0 517 311 101 35 chr4 26498388 26498439 -157790223 + LTR16A1 LTR ERVL 2 48 -409 1673 175 45 17 chr4 26498439 26498794 -157789868 - MLT1A1 LTR MaLR 0 365 1 517 311 101 35 chr4 26498794 26499170 -157789492 + LTR16A1 LTR ERVL 48 457 0 210 236 0 36 chr4 26499689 26499744 -157788918 + (CATATA)n Simple_repeat Simple_repeat 1 53 0 345 285 102 7 chr4 26499749 26499886 -157788776 - MIR3 SINE MIR -25 183 34 183 375 0 11 chr4 26501083 26501171 -157787491 + MER5A DNA MER1_type 27 113 -76 854 192 0 0 chr4 26501411 26501581 -157787081 + AluJb SINE Alu 138 307 0 270 293 93 27 chr4 26502728 26502878 -157785784 - MIR SINE MIR -74 188 29 1913 225 59 17 chr4 26503213 26503783 -157784879 + L1MC4a LINE L1 6176 6358 -1 2169 214 65 62 chr4 26504342 26505234 -157783428 - Charlie2 DNA MER1_type 0 2862 1968 30 45 0 0 chr4 26505240 26505284 -157783378 + AT_rich Low_complexity Low_complexity 1 44 0 590 252 58 71 chr4 26505394 26505703 -157782959 - Charlie2 DNA MER1_type -2533 329 25 508 213 50 14 chr4 26505909 26506050 -157782612 - MER103 DNA DNA -15 151 6 206 364 66 25 chr4 26506671 26506792 -157781870 + MIR SINE MIR 16 141 -67 2856 170 19 14 chr4 26508347 26508859 -157779803 - MLT2B2 LTR ERVL 0 515 1 389 340 28 14 chr4 26508974 26509118 -157779544 + MIR SINE MIR 15 160 -102 3107 21 0 19 chr4 26509120 26509493 -157779169 - L1PA2 LINE L1 0 6155 5790 4676 12 0 0 chr4 26509493 26510397 -157778265 + L1PA2 LINE L1 4884 5787 -368 231 326 22 0 chr4 26510923 26511015 -157777647 + MIR3 SINE MIR 93 186 -22 289 237 34 59 chr4 26511095 26511213 -157777449 + Charlie8 DNA MER1_type 77 191 -2226 477 291 55 39 chr4 26511327 26511594 -157777068 + L2 LINE L2 2917 3303 -10 1354 118 81 0 chr4 26512494 26512705 -157775957 - MER30 DNA MER1_type -2 228 1 27 29 0 0 chr4 26513031 26513065 -157775597 + AT_rich Low_complexity Low_complexity 1 34 0 267 398 41 29 chr4 26513415 26513586 -157775076 + L2 LINE L2 3091 3263 -9 271 289 82 24 chr4 26514650 26514858 -157773804 + L1ME1 LINE L1 4034 4253 -1893 2157 235 94 20 chr4 26514870 26515600 -157773062 + L1ME1 LINE L1 5383 6156 -10 348 134 0 0 chr4 26515865 26515877 -157772785 + (GA)n Simple_repeat Simple_repeat 2 13 -55 195 69 0 0 chr4 26515877 26515906 -157772756 + (CA)n Simple_repeat Simple_repeat 2 30 0 348 134 0 0 chr4 26515906 26515960 -157772702 + (GA)n Simple_repeat Simple_repeat 12 68 0 374 258 68 30 chr4 26516088 26516220 -157772442 + MLT1J LTR MaLR 226 362 -149 303 298 94 41 chr4 26516352 26516523 -157772139 - MIR3 SINE MIR -27 181 2 249 361 25 17 chr4 26516540 26516659 -157772003 - L2 LINE L2 -15 3298 3179 1155 156 28 9 chr4 26517298 26517516 -157771146 + AluSg/x SINE Alu 82 303 -9 261 188 38 0 chr4 26517558 26517638 -157771024 + (TA)n Simple_repeat Simple_repeat 2 84 0 230 304 0 14 chr4 26517671 26517740 -157770922 + L2 LINE L2 3232 3299 -14 2463 268 49 69 chr4 26519043 26520230 -157768432 + L1MEc LINE L1 331 1541 -4855 2337 61 0 10 chr4 26520230 26520524 -157768138 + AluY SINE Alu 6 296 -15 2463 268 49 69 chr4 26520524 26520886 -157767776 + L1MEc LINE L1 1541 1838 -4558 2018 131 7 0 chr4 26520886 26521169 -157767493 + AluSx SINE Alu 2 286 -26 2463 268 49 69 chr4 26521169 26521485 -157767177 + L1MEc LINE L1 1838 2159 -4237 668 221 13 13 chr4 26521510 26521668 -157766994 - MLT1H LTR MaLR 0 567 410 692 151 0 0 chr4 26521677 26521783 -157766879 + U6 snRNA snRNA 2 107 0 1189 143 20 0 chr4 26521784 26521987 -157766675 + L1MA4A LINE L1 6087 6293 -10 416 276 136 53 chr4 26523968 26524291 -157764371 + MLT1H1 LTR MaLR 179 528 -27 743 293 88 26 chr4 26524757 26525064 -157763598 - MLT1H LTR MaLR -202 347 22 186 280 40 0 chr4 26526448 26526498 -157762164 - L2 LINE L2 -12 3260 3209 7353 40 11 3 chr4 26527730 26529099 -157759563 - L1PA5 LINE L1 -7 6147 4774 9996 29 5 1 chr4 26529101 26530304 -157758358 + L1PA5 LINE L1 3549 4756 -1390 299 291 170 32 chr4 26530663 26530747 -157757915 + LTR33A LTR ERVL 102 173 -350 1811 153 129 21 chr4 26530747 26531133 -157757529 + MSTA LTR MaLR 1 428 0 299 291 170 32 chr4 26531133 26531295 -157757367 + LTR33A LTR ERVL 173 382 -141 2210 104 7 3 chr4 26531660 26531958 -157756704 - AluSx SINE Alu -13 299 1 1145 314 110 13 chr4 26532122 26532650 -157756012 + L2 LINE L2 2352 2930 -384 182 174 22 0 chr4 26533914 26533960 -157754702 + GA-rich Low_complexity Low_complexity 3 49 0 1714 226 35 13 chr4 26534081 26534283 -157754379 - Charlie4a DNA MER1_type -1467 494 298 1809 156 35 30 chr4 26534283 26534656 -157754006 - THE1C LTR MaLR 0 375 1 1714 226 35 13 chr4 26534656 26534913 -157753749 - Charlie4a DNA MER1_type -1663 298 25 189 200 89 22 chr4 26535165 26535210 -157753452 + MIR SINE MIR 131 178 -84 336 306 45 0 chr4 26585367 26585524 -157703138 - L1M4 LINE L1 -2128 4018 3855 460 138 88 0 chr4 26585918 26585998 -157702664 - MLT1A2 LTR MaLR 0 374 288 737 273 104 7 chr4 26586201 26586490 -157702172 + MLT1K LTR MaLR 239 555 -33 2694 81 17 0 chr4 26586625 26586983 -157701679 + THE1B LTR MaLR 1 364 0 900 239 50 5 chr4 26587043 26587244 -157701418 + MIR SINE MIR 26 235 -27 1459 169 157 27 chr4 26587781 26588220 -157700442 - LTR54B LTR ERV1 -2 496 1 737 314 28 48 chr4 26589283 26589636 -157699026 - LTR16A1 LTR ERVL -5 452 107 498 316 113 1 chr4 26590020 26590225 -157698437 + MIR SINE MIR 36 261 -1 1765 188 0 3 chr4 26590760 26591052 -157697610 + AluJb SINE Alu 1 291 -21 676 289 71 42 chr4 26591879 26592118 -157696544 - MIR SINE MIR -14 248 3 343 308 33 17 chr4 26592819 26592939 -157695723 - MER5A DNA MER1_type 0 189 68 321 100 0 0 chr4 26592954 26593004 -157695658 + (TG)n Simple_repeat Simple_repeat 1 50 0 2557 144 2 0 chr4 26593045 26593448 -157695214 - L1PA16 LINE L1 -3 6163 5760 194 171 24 24 chr4 26593448 26593489 -157695173 + MER5A DNA MER1_type 127 167 -22 275 245 0 0 chr4 26595629 26595682 -157692980 + AluJ/monomer SINE Alu 1 53 -250 301 158 50 45 chr4 26595815 26595899 -157692763 + L1MD3 LINE L1 7676 7963 -29 2047 176 24 52 chr4 26595955 26596489 -157692173 + LTR27 LTR ERV1 12 501 0 * 6382 128 29 29 chr4 26596489 26596568 -157692094 + Tigger3b DNA MER2_type 44 122 -2906 1956 159 130 16 chr4 26596568 26596952 -157691710 + MSTA LTR MaLR 1 428 0 6382 128 29 29 chr4 26596952 26598061 -157690601 + Tigger3b DNA MER2_type 122 1231 0 286 324 43 53 chr4 26598125 26598332 -157690330 - L3 LINE CR1 -30 1547 1343 4582 66 34 0 chr4 26598478 26599068 -157689594 - LTR66 LTR ERVL 0 610 1 914 86 91 3 chr4 26599068 26599305 -157689357 - HERVL66 LTR ERVL 0 4329 3988 6792 45 15 0 chr4 26599324 26600196 -157688466 - L1PA5 LINE L1 -1 6153 5269 2286 38 0 0 chr4 26600194 26600485 -157688177 + L1PA5 LINE L1 4968 5258 -888 * 2634 140 12 2 chr4 26600485 26600913 -157687749 - HERVL66 LTR ERVL -329 4000 3569 * 4535 111 31 7 chr4 26600911 26601593 -157687069 - HERVL66 LTR ERVL -977 3352 2655 2451 89 40 0 chr4 26601574 26601922 -157686740 - HERVL66 LTR ERVL -2532 1797 1436 * 7669 90 33 0 chr4 26601922 26603016 -157685646 - HERVL66 LTR ERVL -3199 1130 1 4428 65 41 5 chr4 26603016 26603605 -157685057 - LTR66 LTR ERVL 0 610 1 322 104 0 0 chr4 26603605 26603653 -157685009 - MLT1H LTR MaLR -17 373 326 2313 120 2 40 chr4 26603654 26604054 -157684608 - Tigger2 DNA MER2_type 0 2718 2334 297 0 0 0 chr4 26604095 26604128 -157684534 + (CA)n Simple_repeat Simple_repeat 2 34 0 303 164 0 0 chr4 26604168 26604223 -157684439 + MLT2A2 LTR ERVL 399 453 0 3066 111 6 8 chr4 26604223 26604702 -157683960 + HERVL-A2 LTR ERVL 1 478 -5176 6094 100 28 1 chr4 26604802 26605711 -157682951 + HERVL-A2 LTR ERVL 642 1574 -4080 228 67 0 0 chr4 26605711 26605741 -157682921 + (TA)n Simple_repeat Simple_repeat 2 31 0 1187 42 0 0 chr4 26605745 26605889 -157682773 + L1PA7 LINE L1 6008 6151 -3 183 367 58 36 chr4 26605973 26606112 -157682550 - L3 LINE CR1 -1379 198 57 333 277 18 27 chr4 26606441 26606553 -157682109 - MIR SINE MIR -55 207 97 1392 217 46 73 chr4 26606806 26607286 -157681376 + MLT1C LTR MaLR 1 467 0 198 264 0 19 chr4 26607473 26607526 -157681136 + L2 LINE L2 3216 3267 -5 23 54 0 0 chr4 26607644 26607681 -157680981 + AT_rich Low_complexity Low_complexity 1 37 0 203 373 85 0 chr4 26608301 26608419 -157680243 + L2 LINE L2 3182 3309 -4 230 259 12 35 chr4 26608796 26608881 -157679781 - MLT1J LTR MaLR -49 462 380 341 288 96 59 chr4 26609439 26609710 -157678952 - MLT1H LTR MaLR -191 358 78 2582 157 7 5 chr4 26610057 26610484 -157678178 + MSTA LTR MaLR 1 428 0 1349 302 88 54 chr4 26612043 26612874 -157675788 + L1MEc LINE L1 58 859 -5537 2007 134 7 7 chr4 26612874 26613164 -157675498 + AluSx SINE Alu 1 290 -22 1349 302 88 54 chr4 26613164 26613186 -157675476 + L1MEc LINE L1 859 879 -5517 518 183 0 10 chr4 26613186 26613290 -157675372 + U13 snRNA snRNA 1 103 -1 1349 302 88 54 chr4 26613290 26613587 -157675075 + L1MEc LINE L1 879 1164 -5232 1544 203 58 0 chr4 26613587 26613882 -157674780 + AluJb SINE Alu 1 312 0 1349 302 88 54 chr4 26613882 26614627 -157674035 + L1MEc LINE L1 1164 2020 -4376 340 200 0 0 chr4 26614644 26614709 -157673953 + L1PA12 LINE L1 1 65 -7516 7305 209 28 8 chr4 26614720 26617926 -157670736 + L1PA12 LINE L1 201 4035 -3549 4628 101 55 1 chr4 26617923 26618649 -157670013 + L1PA14 LINE L1 5396 6160 -1 * 1347 282 88 49 chr4 26618654 26619030 -157669632 + L1MEc LINE L1 2034 2394 -3821 2144 123 10 3 chr4 26619030 26619332 -157669330 + AluSc SINE Alu 1 304 -5 1347 282 88 49 chr4 26619332 26620080 -157668582 + L1MEc LINE L1 2394 3162 -3053 759 332 32 45 chr4 26620083 26620701 -157667961 + L1PA13 LINE L1 788 1397 -6177 297 293 0 0 chr4 26620786 26620885 -157667777 + L1PA13 LINE L1 2084 2182 -5399 7496 125 22 37 chr4 26621282 26623007 -157665655 + L1P4 LINE L1 12 1666 -4480 1979 105 39 20 chr4 26623007 26623445 -157665217 + L1P4 LINE L1 5152 5597 -569 590 267 187 30 chr4 26623554 26623917 -157664745 + MLT1H LTR MaLR 130 549 0 243 278 0 0 chr4 26623917 26623979 -157664683 - MLT1I LTR MaLR -265 144 83 207 220 0 0 chr4 26624143 26624193 -157664469 + GA-rich Low_complexity Low_complexity 3 52 0 1226 136 62 138 chr4 26624242 26624661 -157664001 - MLT1B LTR MaLR 0 390 4 1617 162 90 21 chr4 26625255 26625589 -157663073 - MLT1D LTR MaLR -148 357 1 915 167 68 0 chr4 26626857 26627049 -157661613 + L1P LINE L1 2244 2448 -3698 262 321 52 0 chr4 26627573 26627707 -157660955 - L1MEd LINE L1 -5751 368 228 1733 180 0 3 chr4 26628189 26628472 -157660190 + AluJo SINE Alu 7 288 -24 216 0 0 0 chr4 26628484 26628496 -157660166 + (CA)n Simple_repeat Simple_repeat 1 36 0 216 0 0 0 chr4 26628496 26628520 -157660142 + (CA)n Simple_repeat Simple_repeat 2 25 0 1303 280 80 22 chr4 26628640 26628699 -157659963 + L1ME3 LINE L1 2981 3035 -3111 387 0 0 0 chr4 26628699 26628742 -157659920 + (TA)n Simple_repeat Simple_repeat 2 44 0 1303 280 80 22 chr4 26628742 26629676 -157658986 + L1ME3 LINE L1 3035 4031 -2115 3933 206 70 12 chr4 26629695 26630604 -157658058 + L1 LINE L1 3714 4691 -1455 1641 192 20 47 chr4 26630604 26631005 -157657657 + MLT1B LTR MaLR 1 390 0 3933 206 70 12 chr4 26631005 26631117 -157657545 + L1 LINE L1 4691 4795 -1351 848 257 156 15 chr4 26631124 26632118 -157656544 + L1ME3 LINE L1 4961 6148 -14 641 163 23 47 chr4 26632353 26632525 -157656137 + L1MA5 LINE L1 4393 4560 -1586 1177 226 137 96 chr4 26632526 26633279 -157655383 + LTR1B LTR ERV1 1 784 -42 3366 156 41 11 chr4 26633507 26634465 -157654197 + L1MA5 LINE L1 4682 5651 -646 1732 144 131 31 chr4 26634468 26634850 -157653812 + MSTA LTR MaLR 9 428 0 3429 137 23 20 chr4 26634850 26635492 -157653170 + L1MA5 LINE L1 5647 6290 -10 553 236 13 45 chr4 26635509 26635666 -157652996 - MLT2B1 LTR ERVL -7 513 362 676 236 13 13 chr4 26636064 26636221 -157652441 + MLT1J2 LTR MaLR 40 196 -254 4030 96 4 0 chr4 26636584 26637134 -157651528 + MER41A LTR ERV1 1 552 -2 5215 117 53 1 chr4 26637223 26638030 -157650632 + MER41A-int LTR ERV1 3 851 -5095 * 8984 134 134 62 chr4 26638021 26638446 -157650216 + MER41A-int LTR ERV1 1550 1943 -5594 2298 106 0 3 chr4 26638446 26638757 -157649905 + AluSg SINE Alu 1 310 0 8984 134 134 62 chr4 26638757 26638978 -157649684 + MER41A-int LTR ERV1 1943 2147 -5390 237 286 0 0 chr4 26638978 26639034 -157649628 + tRNA-Glu-GAG tRNA tRNA 7 62 -13 8984 134 134 62 chr4 26639034 26640340 -157648322 + MER41A-int LTR ERV1 2147 3703 -3834 6759 96 38 0 chr4 26640340 26641389 -157647273 - L1P LINE L1 -1116 5030 3942 492 102 82 0 chr4 26642350 26642497 -157646165 + (TA)n Simple_repeat Simple_repeat 1 159 0 288 326 109 51 chr4 26643144 26643748 -157644914 + L2 LINE L2 2152 2790 -524 3049 92 8 0 chr4 26644043 26644524 -157644138 - L1P LINE L1 -2876 3270 2786 1767 122 14 0 chr4 26644512 26644800 -157643862 + L1P LINE L1 2491 2782 -3364 * 11815 98 44 9 chr4 26644806 26647223 -157641439 + MER41A-int LTR ERV1 2675 5944 -2 4088 68 18 4 chr4 26647223 26647769 -157640893 + MER41A LTR ERV1 1 554 0 3567 106 21 59 chr4 26647770 26648394 -157640268 - MER4A LTR ERV1 0 600 1 182 84 21 95 chr4 26649387 26649482 -157639180 + (TATAA)n Simple_repeat Simple_repeat 4 91 0 1452 194 15 7 chr4 26650212 26650485 -157638177 + AluJo SINE Alu 1 275 -37 243 0 0 0 chr4 26650494 26650521 -157638141 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 196 379 40 23 chr4 26650686 26650860 -157637802 + MIR3 SINE MIR 29 205 -3 1700 82 9 0 chr4 26654400 26654631 -157634031 + THE1C LTR MaLR 143 375 0 9988 120 48 4 chr4 26654631 26656144 -157632518 + THE1C-int LTR MaLR 1 1580 0 2521 87 50 8 chr4 26656147 26656504 -157632158 + THE1C LTR MaLR 4 375 0 408 291 100 42 chr4 26656810 26657823 -157630839 + L1M4 LINE L1 3522 4592 -1554 1539 232 52 52 chr4 26658083 26658588 -157630074 - MLT1D LTR MaLR 0 505 1 21 0 0 0 chr4 26658588 26658609 -157630053 + AT_rich Low_complexity Low_complexity 1 21 0 344 171 24 49 chr4 26658619 26658701 -157629961 - MER69 DNA AcHobo 0 2526 2447 362 216 0 144 chr4 26658701 26658854 -157629808 - MER69 DNA AcHobo -2391 135 5 240 35 0 0 chr4 26660481 26660510 -157628152 + (TG)n Simple_repeat Simple_repeat 2 30 0 7916 136 11 4 chr4 26660526 26662764 -157625898 - L1PA11 LINE L1 -41 6133 3879 412 350 61 52 chr4 26662861 26663187 -157625475 - L2 LINE L2 -1 3271 2939 755 247 27 45 chr4 26663187 26663410 -157625252 - MER20 DNA MER1_type 0 219 1 412 350 61 52 chr4 26663410 26663509 -157625153 - L2 LINE L2 -333 2939 2842 193 292 97 35 chr4 26663527 26663640 -157625022 + MIR SINE MIR 112 231 -31 1128 262 95 46 chr4 26664536 26665010 -157623652 - MLT1D LTR MaLR -4 501 5 259 348 18 9 chr4 26665347 26665459 -157623203 - MIR SINE MIR -70 192 80 378 42 0 0 chr4 26665674 26665722 -157622940 + (CA)n Simple_repeat Simple_repeat 1 48 0 193 195 138 46 chr4 26665759 26665846 -157622816 - L3 LINE CR1 -906 671 577 709 310 15 55 chr4 26666803 26667129 -157621533 + L2 LINE L2 3001 3313 0 3171 65 8 5 chr4 26667426 26667921 -157620741 + L1P3 LINE L1 5200 5695 -477 1997 116 0 11 chr4 26668516 26668836 -157619826 - AluSx SINE Alu 0 317 1 388 327 35 30 chr4 26670074 26670276 -157618386 - MIR SINE MIR -12 250 48 219 346 10 10 chr4 26670750 26670854 -157617808 + L2 LINE L2 2890 2993 -279 395 361 77 52 chr4 26671031 26671397 -157617265 + L2 LINE L2 2890 3264 -8 251 308 26 68 chr4 26671777 26671894 -157616768 - MIR SINE MIR -76 132 21 22 0 0 0 chr4 26672269 26672291 -157616371 + AT_rich Low_complexity Low_complexity 1 22 0 250 351 21 0 chr4 26672360 26672454 -157616208 - L2 LINE L2 -10 3303 3208 456 310 157 48 chr4 26672979 26673482 -157615180 + L2 LINE L2 2420 2977 -337 570 308 73 49 chr4 26674189 26674436 -157614226 + MIR SINE MIR 9 261 -1 2227 131 13 40 chr4 26674791 26675165 -157613497 + THE1B LTR MaLR 1 364 0 11093 105 17 2 chr4 26675165 26676722 -157611940 + THE1B-int LTR MaLR 1 1580 0 330 25 0 0 chr4 26676722 26676762 -157611900 + THE1B LTR MaLR 1 40 -335 * 873 144 17 46 chr4 26676757 26676930 -157611732 + THE1B LTR MaLR 197 364 0 186 231 176 11 chr4 26677460 26677551 -157611111 + MER5C DNA MER1_type 178 283 -41 269 222 111 65 chr4 26677563 26677671 -157610991 - MIR SINE MIR -19 243 131 282 125 0 0 chr4 26677887 26677935 -157610727 + (CA)n Simple_repeat Simple_repeat 2 49 0 348 239 0 0 chr4 26677964 26678035 -157610627 - L2 LINE L2 -1 3312 3242 429 233 8 54 chr4 26678636 26678765 -157609897 - L2 LINE L2 0 3313 3191 2070 140 0 19 chr4 26678832 26679146 -157609516 + AluSx SINE Alu 1 308 -4 22361 29 0 0 chr4 26679150 26682630 -157606032 + L1PA3 LINE L1 2679 6152 -3 218 225 0 0 chr4 26682789 26682829 -157605833 - L2 LINE L2 -253 3060 3021 313 179 26 26 chr4 26684461 26684539 -157604123 - MLT1J LTR MaLR -18 493 416 434 69 0 42 chr4 26684691 26684763 -157603899 - L1MC2 LINE L1 -11 6333 6265 444 255 10 75 chr4 26684923 26685123 -157603539 + L2 LINE L2 3127 3313 0 1987 137 8 48 chr4 26686564 26686937 -157601725 + MER34B LTR ERV1 1 358 -207 727 39 19 0 chr4 26687394 26687497 -157601165 + (TAGA)n Simple_repeat Simple_repeat 2 106 0 2487 58 0 6 chr4 26688494 26688807 -157599855 + AluY SINE Alu 1 311 0 23 0 0 0 chr4 26689462 26689485 -157599177 + AT_rich Low_complexity Low_complexity 1 23 0 6396 46 15 2 chr4 26689825 26690628 -157598034 + L1PA7 LINE L1 5341 6153 -1 378 309 109 51 chr4 26690639 26690914 -157597748 - L2 LINE L2 -1548 1766 1476 347 228 49 74 chr4 26690940 26691102 -157597560 - L1M4 LINE L1 -1827 4319 4162 226 296 194 9 chr4 26691739 26691847 -157596815 + L2 LINE L2 3124 3251 -21 422 250 95 43 chr4 26692006 26692238 -157596424 - MIR SINE MIR 0 262 19 2306 112 0 0 chr4 26692811 26693114 -157595548 - AluSx SINE Alu -9 303 1 308 374 77 32 chr4 26693274 26693520 -157595142 + MIR SINE MIR 6 262 0 251 337 151 6 chr4 26693516 26693682 -157594980 + MIR SINE MIR 68 257 -5 * 306 326 137 33 chr4 26695201 26695425 -157593237 - MIR SINE MIR -15 247 3 455 303 58 11 chr4 26695450 26695638 -157593024 + MIR SINE MIR 11 207 -55 225 371 0 0 chr4 26695777 26695866 -157592796 - MIR3 SINE MIR -9 199 111 309 267 86 91 chr4 26696215 26696402 -157592260 - MIR3 SINE MIR -19 189 4 382 341 46 102 chr4 26696868 26696960 -157591702 - L2 LINE L2 -1 3271 3175 2104 99 0 0 chr4 26696960 26697232 -157591430 - AluSc SINE Alu -2 307 36 382 341 46 102 chr4 26697232 26697351 -157591311 - L2 LINE L2 -97 3175 3082 2647 97 14 6 chr4 26697351 26697712 -157590950 + THE1B LTR MaLR 1 364 0 382 341 46 102 chr4 26697712 26697824 -157590838 - L2 LINE L2 -190 3082 2965 285 218 141 0 chr4 26697990 26698068 -157590594 - MIR SINE MIR -2 260 172 750 261 89 37 chr4 26698535 26698988 -157589674 - L1ME LINE L1 -368 5794 5317 852 297 141 31 chr4 26699019 26699828 -157588834 - L1ME LINE L1 -867 5279 4382 298 184 0 0 chr4 26699946 26699995 -157588667 - MIR SINE MIR -109 153 105 2444 183 25 2 chr4 26699998 26700485 -157588177 + L1MB1 LINE L1 5658 6155 -13 315 316 143 0 chr4 26700519 26700617 -157588045 - MIR SINE MIR -148 114 3 201 74 0 0 chr4 26701482 26701509 -157587153 + (CA)n Simple_repeat Simple_repeat 2 28 0 240 390 95 0 chr4 26703061 26703166 -157585496 - L2 LINE L2 -42 3230 3116 1733 153 10 32 chr4 26703243 26703556 -157585106 + AluJo SINE Alu 1 306 -6 364 222 25 0 chr4 26703630 26703711 -157584951 - MIR SINE MIR -83 179 97 339 287 93 9 chr4 26704333 26704441 -157584221 - L2 LINE L2 -3 3269 3153 1784 173 0 23 chr4 26705044 26705351 -157583311 + AluJo SINE Alu 1 300 -12 392 169 48 0 chr4 26705528 26705611 -157583051 - L1MA5 LINE L1 -6 6294 6208 4579 137 46 20 chr4 26705636 26706485 -157582177 - L1MA4 LINE L1 -176 6124 5254 407 155 14 0 chr4 26706561 26706632 -157582030 - MER58 DNA MER1_type -21 2399 2328 2418 76 0 0 chr4 26706777 26707080 -157581582 + AluY SINE Alu 1 303 -8 1843 251 78 21 chr4 26707912 26708883 -157579779 + L1ME3 LINE L1 4960 5996 -166 801 286 64 4 chr4 26709214 26709448 -157579214 + MIR SINE MIR 7 254 -8 314 197 26 0 chr4 26709523 26709599 -157579063 + L1MC4a LINE L1 5876 5953 -1855 1882 150 0 3 chr4 26711113 26711406 -157577256 + AluJb SINE Alu 9 300 -12 21 36 0 0 chr4 26712050 26712078 -157576584 + AT_rich Low_complexity Low_complexity 1 28 0 1222 117 122 19 chr4 26712197 26712411 -157576251 + MER46A DNA MER2_type 1 236 0 205 236 18 18 chr4 26712605 26712660 -157576002 + MIR SINE MIR 65 119 -89 213 65 0 0 chr4 26712864 26712895 -157575767 + (A)n Simple_repeat Simple_repeat 1 31 0 291 325 172 18 chr4 26716176 26716339 -157572323 + MIR SINE MIR 5 192 -70 262 368 26 43 chr4 26717046 26717163 -157571499 - L2 LINE L2 -17 3255 3141 747 265 28 16 chr4 26717185 26717438 -157571224 - MIR SINE MIR -2 260 5 188 194 0 0 chr4 26719826 26719862 -157568800 - L2 LINE L2 0 3313 3278 1196 183 40 37 chr4 26720246 26720519 -157568143 - ORSL DNA AcHobo 0 275 2 1483 129 0 9 chr4 26721472 26721696 -157566966 + AluSg/x SINE Alu 87 308 -4 1938 138 3 28 chr4 26722702 26723022 -157565640 + AluSx SINE Alu 1 312 0 2136 117 7 10 chr4 26724579 26724879 -157563783 + AluSx SINE Alu 1 299 -13 507 257 33 26 chr4 26725730 26725882 -157562780 + MIR SINE MIR 102 254 -8 368 279 126 16 chr4 26726274 26726464 -157562198 - L2 LINE L2 -9 3304 3094 232 330 42 17 chr4 26728632 26728750 -157559912 + L2 LINE L2 2667 2787 -527 1502 240 48 5 chr4 26729039 26729456 -157559206 - Zaphod DNA AcHobo -1 4030 3596 721 197 145 15 chr4 26729589 26729858 -157558804 - Zaphod DNA AcHobo -3204 827 524 588 331 112 60 chr4 26730028 26730217 -157558445 - L2 LINE L2 -346 2968 2790 2330 99 0 3 chr4 26730217 26730521 -157558141 + AluSx SINE Alu 1 303 -9 588 331 112 60 chr4 26730521 26731127 -157557535 - L2 LINE L2 -524 2790 2118 2061 126 33 0 chr4 26731127 26731428 -157557234 - AluSx SINE Alu -1 311 1 588 331 112 60 chr4 26731428 26731542 -157557120 - L2 LINE L2 -1196 2118 2011 935 214 66 73 chr4 26732276 26732579 -157556083 - MER58B DNA MER1_type -1 340 40 568 161 42 17 chr4 26733209 26733327 -157555335 + MER31-int LTR ERV1 914 1034 -3902 1262 133 0 10 chr4 26734135 26734330 -157554332 - AluSg/x SINE Alu -1 311 119 511 133 0 0 chr4 26734430 26734505 -157554157 + AluS SINE Alu 221 295 -15 183 42 0 0 chr4 26734775 26734799 -157553863 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 2077 117 7 10 chr4 26734908 26735208 -157553454 - AluSx SINE Alu -13 299 1 189 0 0 0 chr4 26735595 26735616 -157553046 + (TA)n Simple_repeat Simple_repeat 1 21 0 260 246 14 0 chr4 26735742 26735811 -157552851 + (TA)n Simple_repeat Simple_repeat 1 70 0 26 0 0 0 chr4 26736254 26736280 -157552382 + AT_rich Low_complexity Low_complexity 1 26 0 809 204 41 0 chr4 26736868 26737040 -157551622 + L1PB4 LINE L1 5966 6144 -12 2306 90 0 16 chr4 26737560 26737871 -157550791 + AluSg1 SINE Alu 1 306 -3 2158 110 0 32 chr4 26738494 26738804 -157549858 - AluSx SINE Alu -12 300 1 31 76 0 0 chr4 26738870 26738936 -157549726 + AT_rich Low_complexity Low_complexity 1 66 0 225 338 12 25 chr4 26738943 26739023 -157549639 - MIR SINE MIR -107 155 77 2177 213 25 36 chr4 26740860 26741420 -157547242 + MLT2B3 LTR ERVL 1 554 0 336 267 67 0 chr4 26742729 26742819 -157545843 - MER5A DNA MER1_type -5 184 89 242 318 109 9 chr4 26743142 26743252 -157545410 + L2 LINE L2 3147 3267 -5 1856 70 23 0 chr4 26743871 26744128 -157544534 + L1PA13 LINE L1 5901 6163 0 2420 140 91 56 chr4 26745020 26745556 -157543106 + MER34B LTR ERV1 11 565 0 1913 135 44 0 chr4 26746061 26746357 -157542305 - AluSx SINE Alu -3 309 1 298 258 103 10 chr4 26746669 26746766 -157541896 - MIR SINE MIR -128 134 29 198 0 0 0 chr4 26747062 26747084 -157541578 + (TTG)n Simple_repeat Simple_repeat 3 24 0 2034 140 0 3 chr4 26747086 26747372 -157541290 - AluSx SINE Alu -27 285 1 259 269 76 20 chr4 26750181 26750348 -157538314 + MLT1K LTR MaLR 303 517 -71 303 313 133 0 chr4 26750371 26750499 -157538163 - MIR SINE MIR -64 198 54 261 314 37 95 chr4 26750802 26751098 -157537564 + L2 LINE L2 2690 2968 -346 2106 83 50 0 chr4 26751203 26751481 -157537181 + AluSx SINE Alu 2 293 -19 421 271 7 83 chr4 26752705 26752849 -157535813 - MLT1L LTR MaLR 0 615 456 2145 126 0 7 chr4 26753247 26753540 -157535122 + AluSx SINE Alu 6 296 -16 527 276 104 40 chr4 26753858 26754184 -157534478 + L2 LINE L2 2967 3313 0 185 252 258 38 chr4 26754230 26754389 -157534273 + L2 LINE L2 2155 2348 -966 282 186 34 0 chr4 26754414 26754473 -157534189 + MER5A DNA MER1_type 126 186 -3 208 125 313 0 chr4 26754767 26754815 -157533847 + L2 LINE L2 3206 3268 -4 23 0 0 0 chr4 26755072 26755095 -157533567 + AT_rich Low_complexity Low_complexity 1 23 0 672 260 79 20 chr4 26755486 26755740 -157532922 - LTR16C LTR ERVL -35 456 188 1838 91 88 0 chr4 26755941 26756204 -157532458 + L1PA14 LINE L1 5865 6150 -11 217 238 0 0 chr4 26757295 26757337 -157531325 + (CATA)n Simple_repeat Simple_repeat 3 44 0 1375 136 30 27 chr4 26757841 26758080 -157530582 + MSTA LTR MaLR 166 426 -2 230 159 0 143 chr4 26758175 26758238 -157530424 + MER58B DNA MER1_type 171 224 -117 401 184 149 35 chr4 26758241 26758355 -157530307 + MER58B DNA MER1_type 197 323 -18 390 306 32 0 chr4 26759404 26759528 -157529134 - MIR SINE MIR -128 134 7 370 265 43 26 chr4 26759877 26759994 -157528668 + MIR SINE MIR 48 166 -96 654 99 0 0 chr4 26760116 26760207 -157528455 + L1PB1 LINE L1 5883 5973 -178 1551 70 25 0 chr4 26760208 26760409 -157528253 + AluYa5 SINE Alu 1 206 -105 473 279 137 39 chr4 26760732 26760965 -157527697 - MLT1L LTR MaLR -34 581 326 192 40 0 0 chr4 26761018 26761043 -157527619 + (CA)n Simple_repeat Simple_repeat 1 25 0 530 174 6 116 chr4 26761099 26761215 -157527447 + MER3 DNA MER1_type 17 63 -99 2592 61 0 0 chr4 26761215 26761526 -157527136 + AluY SINE Alu 1 311 0 530 174 6 116 chr4 26761526 26761581 -157527081 + MER3 DNA MER1_type 63 122 -40 1601 178 25 4 chr4 26761590 26761871 -157526791 + AluJo SINE Alu 6 292 -20 696 101 0 10 chr4 26761912 26762011 -157526651 + MER4A LTR ERV1 1 98 -566 1167 110 8 12 chr4 26762011 26762291 -157526371 + MER4A LTR ERV1 261 664 0 337 276 19 0 chr4 26762714 26762819 -157525843 + (CATATA)n Simple_repeat Simple_repeat 4 110 0 788 238 0 0 chr4 26763815 26763982 -157524680 - FRAM SINE Alu 0 167 1 17315 125 18 23 chr4 26763982 26765129 -157523533 - Tigger4(Zombi) DNA MER2_type -35 2696 1544 2330 103 0 3 chr4 26765129 26765429 -157523233 - AluSq SINE Alu -14 299 1 17315 125 18 23 chr4 26765429 26766553 -157522109 - Tigger4(Zombi) DNA MER2_type -1187 1544 440 2435 83 0 6 chr4 26766553 26766865 -157521797 - AluSg SINE Alu 0 310 1 17315 125 18 23 chr4 26766865 26767299 -157521363 - Tigger4(Zombi) DNA MER2_type -2291 440 5 557 245 92 5 chr4 26767530 26767714 -157520948 - MER3 DNA MER1_type -9 200 1 1432 302 138 24 chr4 26767875 26768497 -157520165 + MER115 DNA AcHobo 1 693 0 259 257 7 29 chr4 26769208 26769344 -157519318 + (CGG)n Simple_repeat Simple_repeat 2 134 0 25 65 0 0 chr4 26769468 26769514 -157519148 + GC_rich Low_complexity Low_complexity 1 46 0 32 26 0 0 chr4 26769645 26769684 -157518978 + GC_rich Low_complexity Low_complexity 1 39 0 860 88 0 0 chr4 26769726 26769840 -157518822 + AluY SINE Alu 196 309 -2 1291 93 60 0 chr4 26769840 26770022 -157518640 + L1PB1 LINE L1 5959 6151 0 342 277 80 11 chr4 26770436 26770624 -157518038 + L1ME4a LINE L1 5705 5905 -216 2157 132 0 10 chr4 26770742 26771052 -157517610 - AluSq SINE Alu -6 307 1 253 269 140 54 chr4 26771399 26771492 -157517170 + MIR3 SINE MIR 83 183 -25 451 240 62 73 chr4 26772685 26772877 -157515785 + MLT1D LTR MaLR 48 237 -268 6521 55 1 9 chr4 26773146 26773267 -157515395 + L1PA7 LINE L1 5366 5486 -668 2441 76 0 0 chr4 26773267 26773570 -157515092 + AluY SINE Alu 1 303 -8 6521 55 1 9 chr4 26773570 26774227 -157514435 + L1PA7 LINE L1 5486 6138 -16 395 219 47 29 chr4 26774243 26774382 -157514280 + L1MB4 LINE L1 5299 5448 -714 607 207 0 41 chr4 26774477 26774634 -157514028 + FLAM_A SINE Alu 1 152 0 266 235 10 61 chr4 26774644 26774742 -157513920 + L1MB4 LINE L1 5592 5684 -2124 227 276 30 75 chr4 26774762 26774961 -157513701 + L1MB4 LINE L1 5679 5868 -1940 870 158 7 0 chr4 26774999 26775138 -157513524 + FRAM SINE Alu 20 159 -17 839 194 61 15 chr4 26775480 26775676 -157512986 + MER58B DNA MER1_type 31 235 -106 588 204 19 0 chr4 26775805 26775908 -157512754 + MER58B DNA MER1_type 237 341 0 1622 181 0 29 chr4 26776459 26776768 -157511894 + AluJo SINE Alu 1 300 -12 273 302 26 35 chr4 26776768 26776884 -157511778 - MIR SINE MIR -92 170 56 570 323 91 36 chr4 26776959 26777343 -157511319 + LTR16B LTR ERVL 40 444 -20 227 146 83 0 chr4 26777830 26777878 -157510784 + HsTC2 DNA Tc2 248 299 -1599 * 445 275 127 54 chr4 26777851 26778182 -157510480 + HsTC2 DNA Tc2 471 825 -1073 278 238 43 108 chr4 26778214 26778399 -157510263 + L1MC4 LINE L1 7870 8042 0 2224 124 0 0 chr4 26778408 26778707 -157509955 + AluSx SINE Alu 1 299 -13 302 344 36 36 chr4 26778965 26779160 -157509502 - L1MEd LINE L1 -4971 1148 954 1647 147 102 0 chr4 26779175 26779440 -157509222 - AluSx SINE Alu -20 292 1 270 227 41 52 chr4 26779616 26779713 -157508949 - HAL1 LINE L1 -1608 899 804 317 339 40 16 chr4 26780812 26780936 -157507726 + MIR SINE MIR 11 137 -125 1851 169 89 13 chr4 26781342 26781655 -157507007 - MER1B DNA MER1_type 0 337 1 726 224 177 10 chr4 26782194 26782386 -157506276 + MER58A DNA MER1_type 1 224 0 341 284 71 58 chr4 26782394 26782549 -157506113 + MER5B DNA MER1_type 1 157 -21 842 202 80 28 chr4 26783004 26783092 -157505570 + L1MB4 LINE L1 5956 6038 -142 2246 130 47 39 chr4 26783092 26783453 -157505209 - THE1B LTR MaLR 0 364 1 842 202 80 28 chr4 26783453 26783577 -157505085 + L1MB4 LINE L1 6038 6179 -1 315 255 75 0 chr4 26783962 26784056 -157504606 + MER94 DNA DNA 1 101 -33 680 183 8 15 chr4 26784888 26785019 -157503643 - MLT1E3 LTR MaLR 0 624 495 1146 179 145 34 chr4 26785325 26785502 -157503160 - MER58D DNA MER1_type -2034 386 230 2282 186 33 15 chr4 26785502 26785960 -157502702 + MER31B LTR ERV1 1 466 0 1146 179 145 34 chr4 26785960 26786107 -157502555 - MER58D DNA MER1_type -2190 230 26 557 255 57 81 chr4 26786509 26786807 -157501855 - L2 LINE L2 0 3313 3023 1694 183 3 10 chr4 26787056 26787351 -157501311 - AluJo SINE Alu -19 293 1 298 208 39 52 chr4 26787713 26787778 -157500884 + MER5A DNA MER1_type 110 175 -14 4271 95 7 35 chr4 26787778 26788008 -157500654 + MER41A LTR ERV1 1 236 -318 2464 64 0 7 chr4 26788008 26788306 -157500356 + AluSg SINE Alu 1 296 -14 4271 95 7 35 chr4 26788306 26788645 -157500017 + MER41A LTR ERV1 236 554 0 298 208 39 52 chr4 26788645 26788656 -157500006 + MER5A DNA MER1_type 175 185 -4 1868 226 27 16 chr4 26788936 26789378 -157499284 - MER44D DNA MER2_type 0 605 104 578 191 96 0 chr4 26789378 26789493 -157499169 + AluJ SINE Alu 2 127 -185 442 94 341 24 chr4 26789499 26789584 -157499078 - MER44D DNA MER2_type -591 114 3 681 192 79 98 chr4 26789585 26789712 -157498950 + L1MC5 LINE L1 7011 7139 -822 2402 61 0 3 chr4 26789712 26790007 -157498655 + AluY SINE Alu 1 294 -17 681 192 79 98 chr4 26790007 26790196 -157498466 + L1MC5 LINE L1 7139 7321 -640 617 321 79 4 chr4 26790290 26790530 -157498132 + MIR SINE MIR 5 262 0 1352 114 283 4 chr4 26791628 26791865 -157496797 + AluSq SINE Alu 1 303 0 1039 181 6 0 chr4 26791884 26792044 -157496618 + AluJ SINE Alu 137 297 -5 1875 132 6 22 chr4 26792044 26792362 -157496300 + AluSq SINE Alu 1 313 0 2089 116 10 0 chr4 26792422 26792715 -157495947 + AluSq SINE Alu 1 296 -17 2459 78 3 0 chr4 26792719 26793025 -157495637 + AluSg SINE Alu 1 307 -3 375 321 51 41 chr4 26793366 26793562 -157495100 - MIR3 SINE MIR -6 202 5 1006 158 6 0 chr4 26793955 26794113 -157494549 - MER46A DNA MER2_type -77 159 1 351 356 84 0 chr4 26794276 26794467 -157494195 + MIR SINE MIR 56 262 0 1229 234 77 56 chr4 26794669 26795217 -157493445 + MLT2B1 LTR ERVL 1 512 -8 180 0 0 0 chr4 26796893 26796913 -157491749 + (A)n Simple_repeat Simple_repeat 1 20 0 256 349 246 0 chr4 26796939 26797065 -157491597 - L2 LINE L2 -13 3259 3103 221 234 195 13 chr4 26797591 26797668 -157490994 - L2 LINE L2 -32 3281 3191 325 264 88 19 chr4 26798810 26798969 -157489693 + MER5B DNA MER1_type 5 174 -4 2034 124 34 0 chr4 26799374 26799665 -157488997 + AluSx SINE Alu 1 301 -11 1881 162 0 0 chr4 26800270 26800574 -157488088 + AluSx SINE Alu 1 304 0 2230 105 0 10 chr4 26800955 26801261 -157487401 + AluY SINE Alu 1 303 -8 22 0 0 0 chr4 26803085 26803107 -157485555 + AT_rich Low_complexity Low_complexity 1 22 0 353 294 64 9 chr4 26803825 26803934 -157484728 + MIR SINE MIR 31 145 -63 21 0 0 0 chr4 26804797 26804818 -157483844 + AT_rich Low_complexity Low_complexity 1 21 0 244 289 174 27 chr4 26805286 26805435 -157483227 + L1MEd LINE L1 447 617 -5502 2259 117 39 25 chr4 26805495 26805854 -157482808 + THE1B LTR MaLR 1 364 0 7578 91 51 55 chr4 26805854 26807114 -157481548 + THE1B-int LTR MaLR 1 1255 -325 1084 73 20 26 chr4 26807214 26807397 -157481265 + THE1B LTR MaLR 182 353 -11 1362 148 15 15 chr4 26807405 26807668 -157480994 + MER6 DNA MER2_type 603 865 0 475 256 15 91 chr4 26807821 26808020 -157480642 + MER5A DNA MER1_type 1 184 -5 287 152 60 7 chr4 26809761 26809912 -157478750 + (TA)n Simple_repeat Simple_repeat 2 160 0 250 244 26 13 chr4 26809944 26810022 -157478640 - MER103 DNA DNA -65 101 23 24 0 0 0 chr4 26813291 26813315 -157475347 + AT_rich Low_complexity Low_complexity 1 24 0 200 245 38 0 chr4 26814135 26814188 -157474474 - L2 LINE L2 -2 3311 3257 1389 149 36 60 chr4 26814381 26814662 -157474000 + AluSg SINE Alu 25 298 -12 944 234 84 33 chr4 26815440 26815807 -157472855 - MER119 DNA MER1_type 0 583 198 268 177 32 56 chr4 26816419 26816509 -157472153 - L1MA10 LINE L1 -33 6301 6191 529 296 13 40 chr4 26816553 26816779 -157471883 + L1ME LINE L1 880 1099 -5848 401 223 176 31 chr4 26816852 26817045 -157471617 + L1ME LINE L1 1247 1467 -5480 528 220 59 17 chr4 26817045 26817244 -157471418 - MER58 DNA MER1_type 0 2420 2 291 225 88 88 chr4 26817245 26817485 -157471177 + L1ME LINE L1 1398 1707 -5240 24 0 0 0 chr4 26819022 26819046 -157469616 + AT_rich Low_complexity Low_complexity 1 24 0 380 263 53 21 chr4 26819119 26819309 -157469353 + L1ME LINE L1 5627 5822 -299 189 0 0 0 chr4 26819671 26819692 -157468970 + (TTTTTG)n Simple_repeat Simple_repeat 4 24 0 377 215 65 0 chr4 26819741 26819834 -157468828 - L1ME4a LINE L1 -283 5838 5740 1995 111 81 0 chr4 26819935 26820206 -157468456 - AluSq SINE Alu -20 293 1 256 235 0 0 chr4 26821275 26821326 -157467336 + L2 LINE L2 3137 3187 -85 203 188 16 62 chr4 26822298 26822362 -157466300 + GA-rich Low_complexity Low_complexity 5 65 0 26 74 0 0 chr4 26823497 26823551 -157465111 + AT_rich Low_complexity Low_complexity 1 54 0 23 0 0 0 chr4 26824394 26824417 -157464245 + AT_rich Low_complexity Low_complexity 1 23 0 2056 135 3 3 chr4 26824630 26824926 -157463736 + AluSx SINE Alu 1 296 -16 1232 382 10 33 chr4 26825208 26825514 -157463148 + AluSx SINE Alu 1 299 -13 444 231 60 26 chr4 26825657 26825774 -157462888 - L2 LINE L2 0 3313 3193 404 310 9 9 chr4 26826327 26826440 -157462222 + MIR3 SINE MIR 48 160 -48 1728 151 18 18 chr4 26826512 26826796 -157461866 + AluJo SINE Alu 4 287 -25 327 338 44 4 chr4 26826810 26826947 -157461715 - MIR SINE MIR -48 160 18 2196 89 10 3 chr4 26827223 26827515 -157461147 - AluSx SINE Alu -18 294 1 23 0 0 0 chr4 26827515 26827538 -157461124 + AT_rich Low_complexity Low_complexity 1 23 0 195 283 19 0 chr4 26829681 26829734 -157458928 - L2 LINE L2 -14 3299 3246 378 277 45 51 chr4 26829785 26829962 -157458700 - MLT1L LTR MaLR -114 501 326 192 40 0 0 chr4 26830015 26830040 -157458622 + (CA)n Simple_repeat Simple_repeat 1 25 0 417 246 9 9 chr4 26830096 26830210 -157458452 + MER3 DNA MER1_type 17 130 -79 2131 138 0 3 chr4 26830212 26830517 -157458145 + AluSx SINE Alu 1 304 -8 810 147 25 147 chr4 26831916 26832111 -157456551 - LTR32 LTR ERVL -2 469 306 2361 87 0 6 chr4 26832111 26832423 -157456239 + AluSg SINE Alu 1 310 0 810 147 25 147 chr4 26832423 26832465 -157456197 - LTR32 LTR ERVL -165 306 261 1105 183 24 53 chr4 26832508 26832619 -157456043 - LTR32 LTR ERVL -218 253 140 2772 10 0 0 chr4 26832619 26832923 -157455739 + AluY SINE Alu 1 304 -7 1105 183 24 53 chr4 26832923 26833057 -157455605 - LTR32 LTR ERVL -331 140 15 194 239 22 0 chr4 26833063 26833109 -157455553 + L2 LINE L2 1511 1557 -1757 372 313 109 30 chr4 26833109 26833502 -157455160 + L2 LINE L2 1815 2238 -1076 2267 120 0 13 chr4 26834775 26835091 -157453571 - AluSx SINE Alu 0 312 1 1092 203 77 81 chr4 26835314 26835754 -157452908 + MLT1C LTR MaLR 1 467 0 195 261 134 83 chr4 26835825 26835982 -157452680 + MIR3 SINE MIR 3 167 -41 2088 119 0 31 chr4 26836028 26836346 -157452316 - AluSq SINE Alu -4 309 2 1099 210 89 46 chr4 26836738 26837086 -157451576 + MLT1A1 LTR MaLR 1 363 -2 2125 124 0 0 chr4 26837678 26837988 -157450674 + AluSg SINE Alu 1 310 0 1631 197 3 10 chr4 26838413 26838712 -157449950 - AluJo SINE Alu -15 297 1 557 240 120 20 chr4 26839055 26839305 -157449357 + MER110A LTR ERV1 171 445 -23 522 228 30 46 chr4 26839611 26839808 -157448854 + L1MC5 LINE L1 7726 7919 -42 1539 178 7 21 chr4 26839921 26840202 -157448460 + AluJb SINE Alu 1 277 -35 185 62 0 31 chr4 26840202 26840234 -157448428 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 894 233 0 5 chr4 26840501 26840690 -157447972 - MER58A DNA MER1_type 0 224 37 825 283 10 5 chr4 26840716 26840921 -157447741 + MIR SINE MIR 21 226 -36 374 274 110 71 chr4 26841649 26841871 -157446791 - MIR SINE MIR -28 234 3 351 351 140 36 chr4 26841911 26842247 -157446415 - L3 LINE CR1 -1196 381 11 2331 98 0 0 chr4 26842373 26842669 -157445993 - AluSx SINE Alu -16 296 1 1260 295 63 25 chr4 26843653 26844288 -157444374 - L2 LINE L2 0 3313 2654 1062 285 143 18 chr4 26844289 26844728 -157443934 - MLT1E LTR MaLR -3 590 97 507 141 11 0 chr4 26844728 26844820 -157443842 + L1MA9 LINE L1 5731 5823 -345 1023 90 0 0 chr4 26844824 26844957 -157443705 + AluSp/q SINE Alu 179 311 -2 1879 175 9 0 chr4 26844964 26845302 -157443360 + L1PB4 LINE L1 5813 6153 -3 1523 205 55 41 chr4 26845318 26845777 -157442885 + L1MA9 LINE L1 5814 6278 -34 352 253 11 21 chr4 26845781 26845876 -157442786 - MLT1E LTR MaLR -485 108 15 969 303 22 25 chr4 26846012 26846379 -157442283 - L2 LINE L2 -766 2548 2183 2048 147 33 14 chr4 26846494 26846862 -157441800 - THE1C LTR MaLR 0 375 1 8442 128 80 8 chr4 26846862 26848334 -157440328 - THE1C-int LTR MaLR 0 1580 2 2058 159 24 24 chr4 26848335 26848706 -157439956 - THE1C LTR MaLR 0 375 5 1590 228 37 3 chr4 26848713 26849038 -157439624 + MLT1A1 LTR MaLR 28 363 -2 1392 298 80 5 chr4 26849148 26849561 -157439101 + MER70A LTR ERVL 4 447 -25 2363 90 10 0 chr4 26849745 26850046 -157438616 - AluSp SINE Alu -8 305 2 282 339 123 40 chr4 26850067 26850392 -157438270 + L2 LINE L2 2130 2481 -833 360 0 0 0 chr4 26850637 26850677 -157437985 + (T)n Simple_repeat Simple_repeat 1 40 0 23 0 0 0 chr4 26850899 26850922 -157437740 + AT_rich Low_complexity Low_complexity 1 23 0 2126 133 3 0 chr4 26850922 26851224 -157437438 - AluSx SINE Alu -9 303 1 23 0 0 0 chr4 26851347 26851370 -157437292 + AT_rich Low_complexity Low_complexity 1 23 0 2054 160 5 54 chr4 26851604 26851991 -157436671 - MLT1B LTR MaLR 0 390 23 3292 176 32 12 chr4 26852079 26852664 -157435998 - MER6A DNA MER2_type 0 605 9 21 36 0 0 chr4 26852748 26852776 -157435886 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 26852801 26852822 -157435840 + AT_rich Low_complexity Low_complexity 1 21 0 2216 237 42 15 chr4 26853004 26853548 -157435114 - MLT1F1 LTR MaLR -8 559 1 1537 152 47 139 chr4 26853582 26853984 -157434678 - MLT1A1 LTR MaLR 0 365 1 344 171 27 45 chr4 26854084 26854185 -157434477 + MLT1D LTR MaLR 370 497 -8 267 213 62 12 chr4 26856040 26856120 -157432542 - MER41C LTR ERV1 -470 84 1 186 163 70 23 chr4 26856141 26856184 -157432478 - MER5A DNA MER1_type -35 154 110 1694 183 3 10 chr4 26856546 26856841 -157431821 + AluJo SINE Alu 1 293 -19 193 314 58 22 chr4 26857198 26857335 -157431327 + L2 LINE L2 3116 3257 -56 22 0 0 0 chr4 26857601 26857623 -157431039 + GC_rich Low_complexity Low_complexity 1 22 0 402 273 16 16 chr4 26859355 26859476 -157429186 + FRAM SINE Alu 41 161 -15 1876 132 6 22 chr4 26859476 26859794 -157428868 + AluSq SINE Alu 1 313 0 2370 89 0 10 chr4 26859854 26860168 -157428494 + AluSx SINE Alu 1 311 -1 453 169 0 34 chr4 26910678 26910767 -157377895 + Harlequin LTR ERV1 6811 6896 0 4156 39 17 0 chr4 26910767 26911249 -157377413 + LTR2B LTR ERV1 1 490 0 192 274 0 32 chr4 26911856 26911918 -157376744 + MIR SINE MIR 175 234 -28 270 272 11 33 chr4 26913626 26913810 -157374852 + (TTA)n Simple_repeat Simple_repeat 1 180 0 2346 182 98 14 chr4 26913837 26916302 -157372360 + SATR1 Satellite Satellite 1 2671 -99 2539 182 23 8 chr4 26916502 26916980 -157371682 - MER31A LTR ERV1 0 485 1 245 326 12 0 chr4 26917099 26917185 -157371477 + L1MEd LINE L1 467 553 -5566 2215 97 3 3 chr4 26917511 26917801 -157370861 + AluSq SINE Alu 12 301 -12 22 35 0 0 chr4 26918330 26918359 -157370303 + AT_rich Low_complexity Low_complexity 1 29 0 2174 203 104 4 chr4 26918373 26919016 -157369646 + SATR1 Satellite Satellite 1 707 -1 1658 187 58 73 chr4 26919046 26919670 -157368992 + SATR1 Satellite Satellite 1 614 -112 2581 177 4 23 chr4 26919720 26920226 -157368436 + L1 LINE L1 4879 5376 -770 805 168 24 0 chr4 26920226 26920392 -157368270 + L1MA8 LINE L1 6119 6289 -2 2581 177 4 23 chr4 26920392 26920406 -157368256 + L1 LINE L1 5376 5389 -757 219 69 0 0 chr4 26921699 26921728 -157366934 + (TG)n Simple_repeat Simple_repeat 2 30 0 2061 147 3 3 chr4 26922572 26922884 -157365778 - AluSx SINE Alu 0 312 1 286 327 29 0 chr4 26925212 26925316 -157363346 - L2 LINE L2 -5 3267 3161 298 205 77 0 chr4 26925654 26925732 -157362930 - MIR SINE MIR -63 145 62 504 308 6 6 chr4 26925858 26926030 -157362632 + MIR SINE MIR 1 172 -90 200 350 0 10 chr4 26926250 26926353 -157362309 + A-rich Low_complexity Low_complexity 3 104 0 516 133 0 0 chr4 26927513 26927596 -157361066 + (TG)n Simple_repeat Simple_repeat 2 84 0 5520 139 36 41 chr4 26927633 26928607 -157360055 - LTR5 LTR ERVK 0 969 1 817 251 33 5 chr4 26928888 26929103 -157359559 - LTR16C LTR ERVL -17 474 254 4140 31 21 0 chr4 26929116 26929595 -157359067 + LTR2B LTR ERV1 2 490 0 2569 114 5 0 chr4 26929595 26929973 -157358689 + Harlequin LTR ERV1 1 380 -6516 * 4905 61 8 14 chr4 26929968 26930603 -157358059 + Harlequin LTR ERV1 262 892 -6004 * 23161 110 12 16 chr4 26930597 26934654 -157354008 + Harlequin LTR ERV1 1572 6696 -200 415 312 115 36 chr4 26937447 26937990 -157350672 - L2 LINE L2 -3 3310 2722 2323 61 0 0 chr4 26937996 26938273 -157350389 - AluY SINE Alu -6 305 29 2108 123 0 7 chr4 26938283 26938585 -157350077 - AluY SINE Alu -10 301 2 232 213 147 0 chr4 26938594 26938669 -157349993 + LTR33 LTR ERVL 434 519 -2 285 220 209 0 chr4 26939059 26939150 -157349512 - L2 LINE L2 -2 3311 3202 225 0 0 0 chr4 26939574 26939599 -157349063 + (A)n Simple_repeat Simple_repeat 1 25 0 525 324 19 23 chr4 26939666 26939928 -157348734 + MIR SINE MIR 2 262 0 453 328 39 15 chr4 26941461 26941665 -157346997 + MIR SINE MIR 23 231 -31 201 154 0 0 chr4 26942873 26942912 -157345750 + A-rich Low_complexity Low_complexity 1 39 0 463 269 102 43 chr4 26943335 26943659 -157345003 - L1MC4a LINE L1 -1859 5949 5607 2706 78 7 182 chr4 26943659 26944208 -157344454 + MLT2A2 LTR ERVL 1 453 0 347 227 116 51 chr4 26944208 26944444 -157344218 - L1MC4a LINE L1 -507 5614 5351 2380 66 3 13 chr4 26944979 26945282 -157343380 - AluY SINE Alu -11 300 1 675 232 64 54 chr4 26945474 26945771 -157342891 - L2 LINE L2 -5 3308 3009 301 359 62 10 chr4 26945831 26946023 -157342639 + L2 LINE L2 2344 2545 -769 609 246 18 101 chr4 26946304 26946402 -157342260 - MIR SINE MIR -19 243 173 2009 140 3 0 chr4 26946402 26946688 -157341974 - AluJb SINE Alu -25 287 1 609 246 18 101 chr4 26946688 26946817 -157341845 - MIR SINE MIR -89 173 35 236 245 0 0 chr4 26947314 26947363 -157341299 - L2 LINE L2 -4 3268 3220 992 268 27 46 chr4 26947402 26947775 -157340887 - MLT1I LTR MaLR -6 403 38 650 252 111 63 chr4 26947798 26948011 -157340651 - L2 LINE L2 -84 3229 3028 2167 114 0 0 chr4 26948011 26948308 -157340354 + AluSx SINE Alu 1 297 -15 650 252 111 63 chr4 26948308 26948701 -157339961 - L2 LINE L2 -285 3028 2573 538 308 148 39 chr4 26948839 26949277 -157339385 + L2 LINE L2 2828 3313 0 1356 134 49 22 chr4 26949393 26949616 -157339046 - MER30 DNA MER1_type 0 230 2 250 272 16 99 chr4 26950489 26950578 -157338084 - MIR SINE MIR -33 229 162 2240 115 6 10 chr4 26950578 26950891 -157337771 - AluSx SINE Alu 0 312 1 250 272 16 99 chr4 26950891 26951005 -157337657 - MIR SINE MIR -100 162 40 255 283 10 0 chr4 26951075 26951174 -157337488 - LTR16A1 LTR ERVL -30 427 328 1748 195 3 19 chr4 26951195 26951574 -157337088 - L1PB4 LINE L1 -2 6154 5782 220 219 0 0 chr4 26951574 26951615 -157337047 + (TATATG)n Simple_repeat Simple_repeat 6 46 0 237 169 0 0 chr4 26951615 26951674 -157336988 + LTR66 LTR ERVL 394 452 -158 299 95 0 0 chr4 26951679 26951721 -157336941 - L1PB4 LINE L1 -399 5757 5716 311 263 44 44 chr4 26951721 26951835 -157336827 - LTR16A1 LTR ERVL -164 293 180 315 266 49 49 chr4 26952254 26952397 -157336265 - MIR3 SINE MIR -63 145 3 279 79 0 0 chr4 26953324 26953362 -157335300 + (A)n Simple_repeat Simple_repeat 1 38 0 369 293 27 48 chr4 26954526 26954673 -157333989 + MIR SINE MIR 48 191 -71 367 250 146 14 chr4 26955083 26955295 -157333367 - L1ME4a LINE L1 -1 6120 5881 294 319 84 0 chr4 26955496 26955615 -157333047 + L2 LINE L2 3136 3264 -8 232 273 54 132 chr4 26955944 26956149 -157332513 + L2 LINE L2 3030 3218 -54 459 309 73 64 chr4 26957615 26957958 -157330704 + L2 LINE L2 2476 2821 -493 1954 134 42 0 chr4 26958236 26958520 -157330142 - AluSx SINE Alu -14 298 3 558 308 105 22 chr4 26958691 26959359 -157329303 - L1M4 LINE L1 -2377 3769 3047 1340 142 4 18 chr4 26959392 26959617 -157329045 + MER46A DNA MER2_type 15 236 0 251 300 79 7 chr4 26959618 26959758 -157328904 - L1M4 LINE L1 -3120 3026 2877 362 353 77 31 chr4 26959782 26960043 -157328619 - L1M4 LINE L1 -3344 2802 2530 221 57 29 0 chr4 26960261 26960296 -157328366 + (TG)n Simple_repeat Simple_repeat 2 37 0 1190 163 46 15 chr4 26961093 26961337 -157327325 - L1M3 LINE L1 -524 5647 5423 489 164 41 16 chr4 26961414 26961536 -157327126 - MER53 DNA DNA 0 189 65 303 167 0 56 chr4 26961536 26961608 -157327054 - MER53 DNA DNA -84 105 38 2830 168 86 90 chr4 26961608 26962807 -157325855 + LTR12 LTR ERV1 10 590 -124 592 290 86 75 chr4 26962853 26963281 -157325381 + MLT2F LTR ERVL 179 611 -52 338 321 7 50 chr4 26963360 26963500 -157325162 - MIR SINE MIR -113 149 16 195 350 68 49 chr4 26963555 26963718 -157324944 + L3 LINE CR1 1002 1167 -410 537 252 50 7 chr4 26964162 26964301 -157324361 + MIR SINE MIR 75 219 -43 1225 238 141 17 chr4 26964328 26964739 -157323923 - MLT1H LTR MaLR -16 533 72 181 286 0 0 chr4 26964840 26964882 -157323780 + MIR SINE MIR 220 261 -1 295 387 17 0 chr4 26965040 26965159 -157323503 - MIR3 SINE MIR -7 201 81 24 53 0 0 chr4 26965416 26965454 -157323208 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr4 26965701 26965729 -157322933 + AT_rich Low_complexity Low_complexity 1 28 0 191 114 29 0 chr4 26965844 26965879 -157322783 + (TA)n Simple_repeat Simple_repeat 1 36 0 390 214 18 89 chr4 26966151 26966319 -157322343 - L1MB3 LINE L1 -30 6153 5998 * 1338 128 8 51 chr4 26966313 26966570 -157322092 - L1MB3 LINE L1 -151 6032 5787 1296 210 72 24 chr4 26966783 26966881 -157321781 + MLT1A1 LTR MaLR 56 148 -217 2233 127 0 7 chr4 26966881 26967189 -157321473 + AluSg SINE Alu 1 306 -4 1296 210 72 24 chr4 26967189 26967381 -157321281 + MLT1A1 LTR MaLR 148 360 -5 5120 99 31 8 chr4 26967514 26968285 -157320377 - L1PA13 LINE L1 -4 6159 5371 199 244 39 13 chr4 26970075 26970153 -157318509 + MIR SINE MIR 147 226 -36 384 299 29 4 chr4 26970161 26970351 -157318311 + MIR SINE MIR 3 260 -2 2680 121 19 17 chr4 26970420 26970842 -157317820 - MSTA LTR MaLR -5 423 1 2244 173 12 2 chr4 26970914 26971313 -157317349 - MER57A LTR ERV1 0 403 1 266 353 33 87 chr4 26972407 26972682 -157315980 + L2 LINE L2 3010 3269 -3 188 119 0 24 chr4 26972777 26972819 -157315843 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 318 250 45 11 chr4 26973057 26973145 -157315517 - MER103 DNA DNA -8 158 68 357 171 132 47 chr4 26973516 26973645 -157315017 + MER103 DNA DNA 11 150 -16 27 0 0 0 chr4 26973900 26973927 -157314735 + AT_rich Low_complexity Low_complexity 1 27 0 4953 153 29 77 chr4 26974709 26974829 -157313833 - L1MA7 LINE L1 -3 6288 6164 243 0 0 0 chr4 26974829 26974856 -157313806 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 2083 104 0 11 chr4 26974856 26975143 -157313519 - AluSq SINE Alu -29 284 1 4953 153 29 77 chr4 26975143 26975999 -157312663 - L1MA7 LINE L1 -126 6165 5339 1617 157 0 75 chr4 26975999 26976318 -157312344 - AluJb SINE Alu -17 295 1 4953 153 29 77 chr4 26976318 26976470 -157312192 - L1MA7 LINE L1 -952 5339 5181 21 0 0 0 chr4 26976515 26976536 -157312126 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr4 26976968 26976996 -157311666 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr4 26978450 26978473 -157310189 + AT_rich Low_complexity Low_complexity 1 23 0 799 318 16 4 chr4 26978787 26979032 -157309630 - MIR SINE MIR -11 251 4 396 319 77 12 chr4 26979169 26979338 -157309324 - MIR SINE MIR -64 198 19 589 146 10 58 chr4 26979620 26979647 -157309015 + LOR1b LTR ERV1 364 391 -70 2475 82 51 20 chr4 26979647 26980000 -157308662 - THE1B LTR MaLR 0 364 1 589 146 10 58 chr4 26980000 26980075 -157308587 + LOR1b LTR ERV1 391 461 0 378 242 11 0 chr4 26980082 26980177 -157308485 - MER69 DNA AcHobo -2 2524 2429 917 120 12 18 chr4 26980854 26981021 -157307641 - L1MA5A LINE L1 0 6297 6132 1290 232 74 13 chr4 26981455 26981848 -157306814 - Zaphod DNA AcHobo -19 4012 3596 685 271 24 0 chr4 26981858 26982024 -157306638 - MER58B DNA MER1_type -1 340 171 1970 256 47 51 chr4 26982045 26982940 -157305722 - Zaphod DNA AcHobo -3041 990 100 2773 199 74 74 chr4 26983022 26983175 -157305487 - L1ME2 LINE L1 0 6164 6012 1805 168 0 10 chr4 26983175 26983472 -157305190 - AluJb SINE Alu -18 294 1 2773 199 74 74 chr4 26983472 26984222 -157304440 - L1ME2 LINE L1 -151 6013 5261 324 255 0 78 chr4 26984229 26984331 -157304331 + L1MC4 LINE L1 6614 6707 -1335 220 170 43 0 chr4 26984331 26984378 -157304284 + (TATATG)n Simple_repeat Simple_repeat 3 51 0 237 333 0 29 chr4 26984453 26984558 -157304104 - Zaphod DNA AcHobo -3919 112 11 2370 150 28 28 chr4 26984677 26985110 -157303552 + Tigger2a DNA MER2_type 1 433 -1 2393 85 0 0 chr4 26985234 26985528 -157303134 - AluSg SINE Alu -14 296 3 485 276 20 46 chr4 26986671 26986823 -157301839 + MIR SINE MIR 6 153 -109 1887 184 14 11 chr4 26986829 26987187 -157301475 - MLT1A1 LTR MaLR -6 359 1 268 311 48 19 chr4 26987187 26987290 -157301372 + MIR SINE MIR 149 254 -8 225 0 0 0 chr4 26987291 26987316 -157301346 + (TTA)n Simple_repeat Simple_repeat 2 26 0 3252 136 26 8 chr4 26987528 26988028 -157300634 + MER1A DNA MER1_type 21 529 0 360 0 0 0 chr4 26990249 26990289 -157298373 + (TG)n Simple_repeat Simple_repeat 2 41 0 1155 131 10 35 chr4 26990372 26990571 -157298091 + MSTA LTR MaLR 3 196 -232 956 269 25 65 chr4 26990565 26990918 -157297744 + MER115 DNA AcHobo 355 693 0 * 1277 202 91 3 chr4 26991044 26991351 -157297311 - MER45B DNA AcHobo -4 1036 703 253 310 9 9 chr4 26991726 26991739 -157296923 - L1MA10 LINE L1 -1 6333 6321 2221 227 55 37 chr4 26991739 26993026 -157295636 - L1ME1 LINE L1 -5 6161 4832 1561 175 7 51 chr4 26993169 26993461 -157295201 + AluJb SINE Alu 6 284 -28 1317 199 142 45 chr4 26993500 26994018 -157294644 - MER39 LTR ERV1 -3 684 1 468 289 180 12 chr4 26994022 26994361 -157294301 - HAL1 LINE L1 -1674 833 438 637 240 80 7 chr4 26994412 26994562 -157294100 - MER63A DNA MER1_type -1 209 49 331 244 63 8 chr4 26994722 26994849 -157293813 - HAL1 LINE L1 -2261 246 113 315 0 0 0 chr4 26996239 26996274 -157292388 + (TA)n Simple_repeat Simple_repeat 1 35 0 1670 28 0 28 chr4 26996276 26996492 -157292170 - L1PA5 LINE L1 0 6154 5945 539 167 29 0 chr4 26997274 26997412 -157291250 + CT-rich Low_complexity Low_complexity 2 143 0 578 306 97 9 chr4 26997588 26997804 -157290858 + MIR SINE MIR 28 262 0 22 70 0 0 chr4 26997834 26997877 -157290785 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr4 26998418 26998439 -157290223 + AT_rich Low_complexity Low_complexity 1 21 0 335 348 130 11 chr4 26998938 26999122 -157289540 - MIR SINE MIR -28 234 29 464 222 20 18 chr4 26999275 26999436 -157289226 - MER57A LTR ERV1 0 403 215 21 0 0 0 chr4 26999603 26999624 -157289038 + AT_rich Low_complexity Low_complexity 1 21 0 447 298 58 35 chr4 26999669 26999840 -157288822 - MIR SINE MIR -69 193 19 859 194 12 6 chr4 27000175 27000335 -157288327 + FAM SINE Alu 8 168 -17 194 290 51 80 chr4 27000448 27000586 -157288076 - L2 LINE L2 -226 3046 2913 190 337 12 23 chr4 27000748 27000834 -157287828 - L2 LINE L2 -255 3017 2933 477 185 12 0 chr4 27001325 27001406 -157287256 - MER93b LTR ERV1 -291 82 1 180 0 0 0 chr4 27001888 27001908 -157286754 + (T)n Simple_repeat Simple_repeat 1 20 0 180 0 0 0 chr4 27002158 27002178 -157286484 + (TCCC)n Simple_repeat Simple_repeat 1 20 0 215 130 0 43 chr4 27002280 27002326 -157286336 + (TTTC)n Simple_repeat Simple_repeat 1 44 0 313 340 56 6 chr4 27002991 27003153 -157285509 + MIR SINE MIR 57 226 -36 2529 160 149 46 chr4 27003594 27004154 -157284508 + MER39 LTR ERV1 1 635 -72 2590 89 41 36 chr4 27004154 27004389 -157284273 - L1MA5A LINE L1 -10 6287 6048 2210 113 0 10 chr4 27004389 27004698 -157283964 - AluSg SINE Alu -4 306 1 2590 89 41 36 chr4 27004698 27004901 -157283761 - L1MA5A LINE L1 -249 6048 5847 2529 160 149 46 chr4 27004901 27004972 -157283690 + MER39 LTR ERV1 635 697 -10 431 127 38 0 chr4 27005442 27005521 -157283141 + CT-rich Low_complexity Low_complexity 3 84 0 1996 123 23 7 chr4 27005537 27005837 -157282825 + AluSg SINE Alu 6 310 0 257 343 103 11 chr4 27006228 27006403 -157282259 + MIR3 SINE MIR 12 202 -6 207 0 0 0 chr4 27006594 27006617 -157282045 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2402 97 3 0 chr4 27008130 27008439 -157280223 + AluSg SINE Alu 1 310 0 1425 226 109 46 chr4 27008702 27009198 -157279464 - MER34 LTR ERV1 -5 537 11 406 368 13 39 chr4 27009746 27009980 -157278682 - MIR SINE MIR -28 234 7 279 325 12 31 chr4 27010056 27010216 -157278446 - L1ME LINE L1 -5904 166 10 322 336 44 0 chr4 27011176 27011289 -157277373 + L2 LINE L2 3151 3268 -4 308 319 76 91 chr4 27011340 27011616 -157277046 - L2 LINE L2 -91 3181 2910 266 284 0 0 chr4 27012487 27012554 -157276108 - MER96 DNA MER1_type? -106 69 3 249 196 0 0 chr4 27013270 27013321 -157275341 + (CATA)n Simple_repeat Simple_repeat 1 51 0 994 298 29 43 chr4 27014581 27015001 -157273661 - MLT1J2 LTR MaLR -36 414 1 1757 138 162 26 chr4 27015231 27015404 -157273258 + MSTA LTR MaLR 1 149 -279 2204 100 0 0 chr4 27015404 27015683 -157272979 + AluSg SINE Alu 16 294 -16 1757 138 162 26 chr4 27015683 27015886 -157272776 + MSTA LTR MaLR 149 428 0 1680 175 72 56 chr4 27016586 27017084 -157271578 + Charlie1b DNA MER1_type 12 517 -6 2142 89 0 0 chr4 27017684 27017953 -157270709 - AluSx SINE Alu -5 307 39 441 161 36 18 chr4 27017965 27018077 -157270585 - L1MD2 LINE L1 0 6359 6246 982 256 63 24 chr4 27018100 27018483 -157270179 + HAL1 LINE L1 1344 1741 -766 726 275 172 14 chr4 27018484 27019105 -157269557 + HAL1 LINE L1 1778 2496 -11 324 240 160 48 chr4 27019995 27020120 -157268542 + MIR SINE MIR 8 146 -116 479 223 0 0 chr4 27020267 27020361 -157268301 - MLT1C LTR MaLR 0 467 374 998 192 76 108 chr4 27020374 27020755 -157267907 + MLT1C LTR MaLR 99 467 0 229 356 91 9 chr4 27020762 27020981 -157267681 - L2 LINE L2 -136 3177 2941 658 310 84 4 chr4 27021413 27021639 -157267023 + MIR SINE MIR 2 245 -17 321 238 50 0 chr4 27022500 27022580 -157266082 - MIR SINE MIR -71 191 108 1783 228 2 0 chr4 27023316 27023750 -157264912 - L1 LINE L1 -2092 4054 3620 859 285 131 65 chr4 27024716 27025175 -157263487 + L2 LINE L2 2820 3308 -5 654 296 57 4 chr4 27025192 27025422 -157263240 - MIR SINE MIR -1 261 20 480 312 64 10 chr4 27026984 27027186 -157261476 + MIR SINE MIR 48 260 -2 23 0 0 0 chr4 27028064 27028087 -157260575 + AT_rich Low_complexity Low_complexity 1 23 0 255 61 0 0 chr4 27028728 27028761 -157259901 + (TG)n Simple_repeat Simple_repeat 2 34 0 345 326 51 78 chr4 27029684 27029978 -157258684 - HAL1 LINE L1 -1254 1253 968 2933 171 24 25 chr4 27029993 27030667 -157257995 + L1MA7 LINE L1 5619 6291 0 305 287 105 70 chr4 27031308 27031451 -157257211 - HAL1 LINE L1 -2358 149 2 1240 156 68 37 chr4 27031658 27031764 -157256898 + MLT1A1 LTR MaLR 1 102 -263 2065 139 44 33 chr4 27031764 27032124 -157256538 + THE1B LTR MaLR 1 364 0 1240 156 68 37 chr4 27032124 27032312 -157256350 + MLT1A1 LTR MaLR 102 304 -61 1388 73 23 41 chr4 27032317 27032536 -157256126 - L1PA8 LINE L1 0 6172 5958 2820 57 0 0 chr4 27032536 27032904 -157255758 + L1PA8 LINE L1 5572 5939 -233 363 169 0 0 chr4 27032905 27032970 -157255692 + MLT1A1 LTR MaLR 299 363 -2 2280 104 3 22 chr4 27033306 27033624 -157255038 - AluSx SINE Alu 0 312 1 771 329 34 0 chr4 27034583 27034817 -157253845 + MIR SINE MIR 21 262 0 283 388 20 6 chr4 27034813 27035044 -157253618 + L2 LINE L2 2731 2962 -310 * 21 36 0 0 chr4 27037255 27037283 -157251379 + AT_rich Low_complexity Low_complexity 1 28 0 1669 156 47 25 chr4 27037504 27037818 -157250844 + AluSg SINE Alu 1 320 0 322 343 36 7 chr4 27038019 27038156 -157250506 - MER5A DNA MER1_type -6 183 43 413 362 102 24 chr4 27038331 27038908 -157249754 - L2 LINE L2 -582 2732 2111 510 248 20 21 chr4 27039816 27039982 -157248680 + L1PB4 LINE L1 5996 6160 -6 345 207 0 0 chr4 27040396 27040483 -157248179 + (CAT)n Simple_repeat Simple_repeat 1 87 0 1082 263 80 25 chr4 27040501 27040901 -157247761 - LTR16B LTR ERVL -2 462 41 24 0 0 0 chr4 27041036 27041060 -157247602 + AT_rich Low_complexity Low_complexity 1 24 0 25 51 0 0 chr4 27041780 27041819 -157246843 + AT_rich Low_complexity Low_complexity 1 39 0 361 295 150 12 chr4 27042753 27042926 -157245736 - MIR SINE MIR 0 262 66 510 208 0 0 chr4 27044296 27044392 -157244270 - MIR SINE MIR -102 160 65 424 306 145 16 chr4 27044414 27044643 -157244019 + MIR SINE MIR 1 262 0 1498 267 80 10 chr4 27045486 27045973 -157242689 + LTR33 LTR ERVL 1 521 0 1082 273 47 43 chr4 27046405 27046849 -157241813 + MLT1C LTR MaLR 22 467 0 1797 205 5 8 chr4 27047159 27047540 -157241122 - MLT1B LTR MaLR 0 390 11 390 159 0 0 chr4 27047970 27048039 -157240623 + GA-rich Low_complexity Low_complexity 1 69 0 23 0 0 0 chr4 27048105 27048128 -157240534 + AT_rich Low_complexity Low_complexity 1 23 0 426 20 0 0 chr4 27048200 27048251 -157240411 + (TG)n Simple_repeat Simple_repeat 2 52 0 328 258 10 31 chr4 27049004 27049101 -157239561 + CT-rich Low_complexity Low_complexity 5 99 0 198 150 0 0 chr4 27049230 27049270 -157239392 + (CATATA)n Simple_repeat Simple_repeat 3 42 0 251 266 0 25 chr4 27049347 27049426 -157239236 + (TA)n Simple_repeat Simple_repeat 1 77 0 231 125 0 0 chr4 27049520 27049560 -157239102 + (CATATA)n Simple_repeat Simple_repeat 3 42 0 23 0 0 0 chr4 27049819 27049842 -157238820 + AT_rich Low_complexity Low_complexity 1 23 0 219 88 0 0 chr4 27049999 27050033 -157238629 + (TTTTTA)n Simple_repeat Simple_repeat 2 35 0 4137 16 0 14 chr4 27050042 27050530 -157238132 - L1PA3 LINE L1 0 6155 5675 612 267 65 28 chr4 27051034 27051494 -157237168 - HAL1 LINE L1 -154 2353 1877 2349 96 0 0 chr4 27052027 27052328 -157236334 + AluSg SINE Alu 1 301 -9 375 242 278 41 chr4 27052807 27053001 -157235661 - MIR SINE MIR -3 259 20 292 337 29 17 chr4 27053578 27053753 -157234909 + MIR SINE MIR 74 250 -12 447 293 99 54 chr4 27053998 27054605 -157234057 - L1ME3A LINE L1 -219 6020 5387 373 196 108 0 chr4 27054631 27054733 -157233929 - L1M4 LINE L1 -3599 2547 2435 1392 273 45 7 chr4 27054743 27055208 -157233454 - L1ME3A LINE L1 -5874 522 40 668 299 84 28 chr4 27055215 27055992 -157232670 - L1M4 LINE L1 -843 5303 4484 225 65 0 0 chr4 27056193 27056224 -157232438 + (TTTTA)n Simple_repeat Simple_repeat 1 31 0 2709 87 2 12 chr4 27056224 27056626 -157232036 - L1PA10 LINE L1 -21 6147 5750 198 0 0 0 chr4 27056702 27056724 -157231938 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 1039 280 97 28 chr4 27056793 27057508 -157231154 - L1M4 LINE L1 -2027 4119 3356 216 86 0 0 chr4 27057686 27057721 -157230941 + (T)n Simple_repeat Simple_repeat 1 35 0 1100 303 165 28 chr4 27059367 27060215 -157228447 - L1M4 LINE L1 -2973 3173 2210 1587 90 4 26 chr4 27060225 27060458 -157228204 + L1PA8A LINE L1 5901 6128 -3 21 0 0 0 chr4 27060459 27060480 -157228182 + AT_rich Low_complexity Low_complexity 1 21 0 497 290 44 58 chr4 27060700 27061065 -157227597 - HAL1 LINE L1 -219 2288 1929 3422 202 28 14 chr4 27061097 27061878 -157226784 + L1MB3 LINE L1 5392 6183 0 23 0 0 0 chr4 27062045 27062068 -157226594 + AT_rich Low_complexity Low_complexity 1 23 0 1842 192 174 0 chr4 27062072 27062515 -157226147 + MLT2B1 LTR ERVL 1 520 0 392 287 44 7 chr4 27062515 27062651 -157226011 - HAL1 LINE L1 -564 1943 1803 766 174 56 51 chr4 27062687 27062883 -157225779 - MLT1B LTR MaLR -190 200 4 2122 134 97 0 chr4 27062885 27063227 -157225435 + THE1C LTR MaLR 1 375 0 463 280 100 0 chr4 27063260 27063410 -157225252 - HAL1 LINE L1 -733 1774 1610 609 360 98 32 chr4 27063414 27063875 -157224787 - L1MEd LINE L1 -5626 493 3 219 328 0 0 chr4 27064365 27064423 -157224239 + MIR SINE MIR 48 105 -157 2039 230 44 14 chr4 27064426 27065073 -157223589 - MER63C DNA MER1_type -131 931 213 1697 118 55 118 chr4 27065073 27065473 -157223189 + THE1C LTR MaLR 1 375 0 2039 230 44 14 chr4 27065473 27065693 -157222969 - MER63C DNA MER1_type -849 213 1 25 0 0 0 chr4 27066441 27066466 -157222196 + AT_rich Low_complexity Low_complexity 1 25 0 371 119 0 0 chr4 27066488 27066555 -157222107 - L1MC2 LINE L1 -1 6343 6277 209 341 0 12 chr4 27066671 27066753 -157221909 + L2 LINE L2 3192 3272 0 681 281 64 36 chr4 27067908 27068157 -157220505 + MIR SINE MIR 7 262 0 180 309 118 0 chr4 27068284 27068352 -157220310 - MIR SINE MIR -150 112 37 1195 219 5 0 chr4 27068371 27068590 -157220072 + MER58A DNA MER1_type 5 224 0 278 120 40 0 chr4 27068667 27068717 -157219945 + MER96 DNA MER1_type? 5 56 -119 2155 98 7 0 chr4 27069535 27069844 -157218818 + AluSp SINE Alu 7 317 0 209 360 13 47 chr4 27070038 27070188 -157218474 + L2 LINE L2 2894 3038 -234 218 279 33 16 chr4 27070335 27070396 -157218266 - L2 LINE L2 -1 3271 3210 185 356 33 22 chr4 27070582 27070672 -157217990 - MIR SINE MIR -14 248 158 241 328 0 0 chr4 27070800 27070867 -157217795 + MIR SINE MIR 79 145 -117 343 258 161 0 chr4 27071143 27071267 -157217395 + MER46C DNA MER2_type 195 338 0 2110 236 18 18 chr4 27072139 27072644 -157216018 + MLT1D LTR MaLR 1 505 0 1801 103 36 0 chr4 27072689 27072942 -157215720 + AluSg SINE Alu 49 310 0 438 228 50 0 chr4 27074035 27074136 -157214526 - MIR SINE MIR -70 192 87 2507 76 0 0 chr4 27074187 27074491 -157214171 + AluY SINE Alu 1 304 -7 267 294 206 0 chr4 27074844 27074980 -157213682 + MIR SINE MIR 10 173 -89 1948 222 59 59 chr4 27075232 27075560 -157213102 - MLT1E2 LTR MaLR 0 626 296 2176 119 3 0 chr4 27075560 27075863 -157212799 - AluSg SINE Alu -6 304 1 1948 222 59 59 chr4 27075863 27076143 -157212519 - MLT1E2 LTR MaLR -329 297 18 1675 193 45 30 chr4 27076401 27076849 -157211813 + MER89 LTR ERV1 3 556 -3 227 322 40 141 chr4 27076874 27076986 -157211676 + L2 LINE L2 2948 3070 -202 643 262 35 31 chr4 27076986 27077242 -157211420 - MIR SINE MIR -4 258 2 227 322 40 141 chr4 27077242 27077433 -157211229 + L2 LINE L2 3070 3220 -52 479 258 60 26 chr4 27078129 27078280 -157210382 - L2 LINE L2 0 3313 3158 213 39 0 0 chr4 27079454 27079480 -157209182 + (TA)n Simple_repeat Simple_repeat 2 27 0 2253 92 3 0 chr4 27080968 27081261 -157207401 - AluY SINE Alu -17 294 1 2218 68 47 0 chr4 27082360 27082638 -157206024 - AluYa5 SINE Alu -16 295 5 354 314 74 0 chr4 27083186 27083307 -157205355 - MIR SINE MIR -65 197 68 180 0 0 0 chr4 27083335 27083355 -157205307 + (TTA)n Simple_repeat Simple_repeat 1 20 0 512 284 37 50 chr4 27084116 27084334 -157204328 + MIR SINE MIR 48 262 0 334 347 148 0 chr4 27085274 27085470 -157203192 + MIR SINE MIR 30 254 -8 186 43 0 0 chr4 27085481 27085504 -157203158 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 836 281 32 24 chr4 27085551 27085800 -157202862 + MIR SINE MIR 2 252 -10 222 301 55 0 chr4 27086251 27086324 -157202338 + MIR SINE MIR 87 163 -99 1997 129 0 16 chr4 27088057 27088360 -157200302 - AluSq SINE Alu -15 298 1 403 264 80 8 chr4 27088366 27088491 -157200171 - MLT1B LTR MaLR -256 134 1 1557 170 37 1 chr4 27088501 27088813 -157199849 + MLT2D LTR ERVL 6 345 -52 1786 183 27 38 chr4 27089372 27089929 -157198733 + MLT2A2 LTR ERVL 1 547 -7 264 308 44 11 chr4 27089962 27090053 -157198609 + MIR SINE MIR 56 149 -113 662 232 66 38 chr4 27090053 27090264 -157198398 + L1MB5 LINE L1 5950 6166 -8 285 272 70 26 chr4 27090264 27090378 -157198284 + MIR SINE MIR 137 255 -7 223 220 17 34 chr4 27090747 27090806 -157197856 + L2 LINE L2 3246 3303 -10 183 114 0 0 chr4 27091062 27091097 -157197565 + (T)n Simple_repeat Simple_repeat 1 35 0 21 95 0 0 chr4 27091630 27091693 -157196969 + AT_rich Low_complexity Low_complexity 1 63 0 490 276 143 22 chr4 27091766 27092081 -157196581 - MLT1K LTR MaLR -42 546 194 4438 145 3 9 chr4 27092769 27093528 -157195134 - L1PA16 LINE L1 -9 6157 5404 2331 133 0 18 chr4 27093528 27093910 -157194752 + THE1C LTR MaLR 1 375 0 460 92 11 11 chr4 27093910 27093997 -157194665 - L1PA16 LINE L1 -758 5408 5322 2003 117 0 17 chr4 27093997 27094295 -157194367 - AluSg SINE Alu -13 297 5 354 314 74 0 chr4 27094844 27094965 -157193697 - MIR SINE MIR -65 197 68 180 0 0 0 chr4 27094993 27095013 -157193649 + (TTA)n Simple_repeat Simple_repeat 1 20 0 486 289 37 50 chr4 27095779 27095997 -157192665 + MIR SINE MIR 48 262 0 319 354 22 31 chr4 27096752 27096978 -157191684 + MIR SINE MIR 34 257 -5 339 311 28 0 chr4 27097001 27097107 -157191555 + L2 LINE L2 3197 3305 -8 1784 148 47 97 chr4 27098094 27098608 -157190054 - L1MA8 LINE L1 -4 6287 5800 911 165 6 6 chr4 27098607 27098783 -157189879 - L1MA8 LINE L1 -1369 4777 4602 * 942 88 7 0 chr4 27098783 27098920 -157189742 - L1M2 LINE L1 -510 5781 5644 378 235 30 76 chr4 27099198 27099365 -157189297 + MIR SINE MIR 64 218 -44 199 327 84 9 chr4 27099435 27099542 -157189120 + MIR3 SINE MIR 89 203 -5 263 254 0 0 chr4 27099660 27099719 -157188943 + (CATA)n Simple_repeat Simple_repeat 4 62 0 2519 73 0 19 chr4 27100175 27100492 -157188170 - AluY SINE Alu 0 311 1 22 80 0 0 chr4 27100673 27100723 -157187939 + AT_rich Low_complexity Low_complexity 1 50 0 302 283 19 28 chr4 27102103 27102209 -157186453 + MIR3 SINE MIR 98 202 -6 180 0 0 0 chr4 27104091 27104111 -157184551 + (ATTG)n Simple_repeat Simple_repeat 4 23 0 1685 171 12 12 chr4 27104116 27104437 -157184225 - L1PB4 LINE L1 -13 6143 5823 207 309 49 25 chr4 27104439 27104520 -157184142 + MIR SINE MIR 20 102 -160 1867 149 0 59 chr4 27106477 27106800 -157181862 + AluSx SINE Alu 1 304 -8 1367 95 15 5 chr4 27106823 27107023 -157181639 + L1PA14 LINE L1 5958 6159 -2 2856 171 8 6 chr4 27107290 27107809 -157180853 + Tigger7 DNA MER2_type 1 520 -1967 571 122 11 0 chr4 27107811 27107901 -157180761 + Tigger7 DNA MER2_type 2401 2491 0 467 275 17 16 chr4 27108742 27108967 -157179695 - L1ME3A LINE L1 -295 5875 5688 402 349 48 0 chr4 27109015 27109161 -157179501 - MER91B DNA MER1_type 0 190 38 758 341 10 10 chr4 27110082 27110375 -157178287 + L3 LINE CR1 1229 1521 -56 5516 62 4 23 chr4 27111837 27112582 -157176080 - L1PA8 LINE L1 -10 6162 5432 702 251 11 38 chr4 27112584 27112767 -157175895 - MER5B DNA MER1_type 0 178 1 212 244 0 0 chr4 27113081 27113122 -157175540 + polypyrimidine Low_complexity Low_complexity 2 42 0 329 221 55 24 chr4 27113252 27113379 -157175283 - HAL1b LINE L1 -887 461 331 394 308 41 29 chr4 27113547 27113719 -157174943 - L1MEd LINE L1 -5002 1117 944 2111 133 67 14 chr4 27113872 27114218 -157174444 + THE1B LTR MaLR 1 364 0 180 0 0 103 chr4 27114698 27114737 -157173925 + (TTTTTA)n Simple_repeat Simple_repeat 1 35 0 5198 130 12 22 chr4 27114742 27115699 -157172963 - L1PB3 LINE L1 -8 6146 5197 2665 102 0 19 chr4 27115800 27116171 -157172491 - THE1B LTR MaLR 0 364 1 24 0 0 0 chr4 27116506 27116530 -157172132 + AT_rich Low_complexity Low_complexity 1 24 0 317 272 25 0 chr4 27117521 27117602 -157171060 - MIR3 SINE MIR -6 202 120 456 358 58 9 chr4 27117709 27117935 -157170727 + MIR SINE MIR 5 241 -21 2071 132 0 13 chr4 27117997 27118300 -157170362 - AluSc SINE Alu -10 299 1 706 281 248 17 chr4 27118382 27118802 -157169860 + L2 LINE L2 2388 2904 -410 370 108 0 84 chr4 27118885 27118968 -157169694 + L1PA16 LINE L1 5886 5961 -204 339 65 0 0 chr4 27118973 27119019 -157169643 - MLT2A1 LTR ERVL 0 444 399 3769 21 0 0 chr4 27119034 27119470 -157169192 + L1PA3 LINE L1 5718 6153 -2 27 49 0 0 chr4 27119481 27119522 -157169140 + AT_rich Low_complexity Low_complexity 1 41 0 2887 69 23 0 chr4 27119549 27119940 -157168722 - MLT2A1 LTR ERVL -44 400 1 1004 141 68 16 chr4 27119941 27120133 -157168529 + L1PA16 LINE L1 5963 6164 -2 1915 143 4 4 chr4 27120146 27120472 -157168190 + AluSx SINE Alu 6 331 0 3201 134 129 109 chr4 27120675 27122101 -157166561 - pTR5 LTR ERV1 -23 1683 31 703 184 26 37 chr4 27122108 27122298 -157166364 - L1PB4 LINE L1 -73 6083 5896 1463 112 95 16 chr4 27124204 27124508 -157164154 + L1MA8 LINE L1 5961 6288 -3 665 250 29 35 chr4 27124618 27124790 -157163872 + MIR SINE MIR 13 183 -79 * 737 291 44 45 chr4 27124783 27125249 -157163413 - L2 LINE L2 -186 3127 2658 1423 187 31 98 chr4 27125249 27125535 -157163127 - MLT1B LTR MaLR 0 390 139 2414 71 17 0 chr4 27125535 27125829 -157162833 - AluY SINE Alu -12 299 1 1423 187 31 98 chr4 27125829 27125960 -157162702 - MLT1B LTR MaLR -251 139 1 1557 170 37 1 chr4 27125970 27126282 -157162380 + MLT2D LTR ERVL 6 345 -52 1852 182 31 31 chr4 27126840 27127396 -157161266 + MLT2A2 LTR ERVL 1 554 0 316 286 44 11 chr4 27127426 27127517 -157161145 + MIR SINE MIR 56 149 -113 989 166 66 38 chr4 27127517 27127728 -157160934 + L1MB5 LINE L1 5950 6166 -8 252 228 123 79 chr4 27127728 27127842 -157160820 + MIR SINE MIR 137 255 -7 223 220 17 34 chr4 27128211 27128270 -157160392 + L2 LINE L2 3246 3303 -10 183 114 0 0 chr4 27128526 27128561 -157160101 + (T)n Simple_repeat Simple_repeat 1 35 0 21 95 0 0 chr4 27129093 27129156 -157159506 + AT_rich Low_complexity Low_complexity 1 63 0 490 276 143 22 chr4 27129229 27129544 -157159118 - MLT1K LTR MaLR -42 546 194 4535 140 3 9 chr4 27130232 27130991 -157157671 - L1PA16 LINE L1 -9 6157 5404 2411 132 0 11 chr4 27130991 27131370 -157157292 + THE1C LTR MaLR 1 375 0 7238 200 8 20 chr4 27131375 27131456 -157157206 - L1 LINE L1 -743 5403 5323 2133 120 0 7 chr4 27131456 27131755 -157156907 - AluSg SINE Alu -13 297 1 7238 200 8 20 chr4 27131755 27133479 -157155183 - L1 LINE L1 -823 5323 3620 191 326 101 45 chr4 27134749 27134927 -157153735 - MIR SINE MIR -12 250 63 197 267 67 0 chr4 27134967 27135012 -157153650 - L2 LINE L2 -77 3195 3148 462 319 9 22 chr4 27135231 27135460 -157153202 + ERVL LTR ERVL 3704 3929 -1835 3195 274 113 17 chr4 27135953 27137308 -157151354 + L2 LINE L2 1822 3313 0 205 133 44 0 chr4 27138186 27138231 -157150431 + (TG)n Simple_repeat Simple_repeat 2 48 0 22 70 0 0 chr4 27138930 27138973 -157149689 + AT_rich Low_complexity Low_complexity 1 43 0 1172 216 84 59 chr4 27139397 27139753 -157148909 + MLT1A1 LTR MaLR 1 365 0 549 297 179 0 chr4 27140274 27140486 -157148176 - MIR SINE MIR -11 251 2 846 126 42 0 chr4 27140831 27140974 -157147688 - L1PA16 LINE L1 0 6166 6018 556 231 19 69 chr4 27141267 27141427 -157147235 + MIR SINE MIR 107 258 -4 22 0 0 0 chr4 27141430 27141452 -157147210 + AT_rich Low_complexity Low_complexity 1 22 0 359 286 161 12 chr4 27141460 27141621 -157147041 + MIR SINE MIR 2 186 -76 415 339 189 0 chr4 27141810 27142064 -157146598 + L2 LINE L2 2533 2834 -480 1369 193 198 29 chr4 27142126 27142571 -157146091 + MLT2B1 LTR ERVL 1 520 0 25 31 0 0 chr4 27142895 27142927 -157145735 + AT_rich Low_complexity Low_complexity 1 32 0 407 255 5 132 chr4 27143009 27143213 -157145449 + MIR SINE MIR 74 251 -11 379 308 58 26 chr4 27143873 27143926 -157144736 + MIR SINE MIR 20 70 -192 2202 129 0 0 chr4 27143926 27144229 -157144433 - AluSg SINE Alu -7 303 1 379 308 58 26 chr4 27144229 27144331 -157144331 + MIR SINE MIR 70 180 -82 621 139 8 23 chr4 27144584 27144713 -157143949 + CT-rich Low_complexity Low_complexity 5 131 0 431 320 46 102 chr4 27145382 27145493 -157143169 + L2 LINE L2 2986 3102 -170 2300 114 3 0 chr4 27145493 27145799 -157142863 - AluSg SINE Alu -3 307 1 431 320 46 102 chr4 27145799 27145990 -157142672 + L2 LINE L2 3102 3271 -1 300 388 78 0 chr4 27147407 27147536 -157141126 - L2 LINE L2 0 3272 3134 660 176 141 0 chr4 27147734 27147876 -157140786 - MSTD LTR MaLR 0 396 235 216 0 0 0 chr4 27147901 27147925 -157140737 + (GA)n Simple_repeat Simple_repeat 1 24 0 475 226 0 0 chr4 27147925 27148027 -157140635 - MSTD LTR MaLR -294 102 1 2321 109 0 0 chr4 27148369 27148708 -157139954 - AluSx SINE Alu 0 339 1 222 242 0 0 chr4 27149370 27149436 -157139226 + CT-rich Low_complexity Low_complexity 2 67 0 650 296 134 41 chr4 27149466 27149964 -157138698 - L2 LINE L2 0 3313 2770 245 307 0 15 chr4 27150116 27150206 -157138456 + MIR SINE MIR 20 107 -101 852 315 114 38 chr4 27150257 27150895 -157137767 + L2 LINE L2 2059 2745 -569 195 42 0 0 chr4 27150900 27150924 -157137738 + (TTG)n Simple_repeat Simple_repeat 1 24 0 308 323 93 25 chr4 27151135 27151296 -157137366 + LTR67 LTR ERVL 1 172 -385 2312 103 0 0 chr4 27151536 27151838 -157136824 - AluY SINE Alu -9 302 1 651 296 55 43 chr4 27152124 27152377 -157136285 + MIR SINE MIR 2 257 -5 218 273 0 0 chr4 27152498 27152542 -157136120 + L2 LINE L2 3182 3225 -47 321 238 50 0 chr4 27152958 27153038 -157135624 - MIR SINE MIR -71 191 108 1908 208 26 29 chr4 27153918 27154364 -157134298 - MLT1C LTR MaLR 0 467 15 234 176 0 39 chr4 27154542 27154593 -157134069 - MLT1B LTR MaLR -157 233 185 385 382 29 32 chr4 27154812 27155152 -157133510 - L1MEd LINE L1 -5254 1162 824 960 292 130 47 chr4 27156000 27156216 -157132446 + MER77 LTR ERV1 53 250 -355 2585 89 24 128 chr4 27156216 27156722 -157131940 + MLT2A2 LTR ERVL 1 453 0 960 292 130 47 chr4 27156722 27157012 -157131650 + MER77 LTR ERV1 250 601 -4 249 182 0 0 chr4 27157101 27157156 -157131506 + (TG)n Simple_repeat Simple_repeat 2 56 0 2091 118 7 10 chr4 27157178 27157475 -157131187 - AluSx SINE Alu -16 296 1 327 25 0 0 chr4 27158287 27158327 -157130335 + (TA)n Simple_repeat Simple_repeat 2 41 0 2318 110 0 0 chr4 27158327 27158635 -157130027 - AluSx SINE Alu -4 308 1 23 0 0 0 chr4 27158685 27158708 -157129954 + AT_rich Low_complexity Low_complexity 1 23 0 4482 85 20 11 chr4 27158858 27159507 -157129155 + L1MA2 LINE L1 5547 6201 -103 338 169 0 0 chr4 27159501 27159560 -157129102 - L1MA2 LINE L1 -41 6263 6205 * 722 88 0 0 chr4 27159632 27159734 -157128928 + L1MA2 LINE L1 6203 6304 0 1615 173 33 36 chr4 27160554 27160918 -157127744 + MLT1A1 LTR MaLR 1 363 -2 772 124 15 7 chr4 27161370 27161507 -157127155 - L1MA8 LINE L1 -3 6288 6151 21 36 0 0 chr4 27162465 27162493 -157126169 + AT_rich Low_complexity Low_complexity 1 28 0 237 211 19 0 chr4 27162929 27162981 -157125681 - MIR SINE MIR -93 169 117 795 320 56 4 chr4 27165329 27165560 -157123102 + MIR SINE MIR 18 260 -2 1169 203 29 26 chr4 27165560 27165900 -157122762 - L1MEd LINE L1 -6098 328 20 6849 143 40 13 chr4 27166107 27167305 -157121357 + Tigger3b DNA MER2_type 1 1230 -1 993 198 63 16 chr4 27167752 27168005 -157120657 + L1MD3 LINE L1 7721 7985 -10 333 0 0 0 chr4 27168086 27168123 -157120539 + (CA)n Simple_repeat Simple_repeat 2 38 0 1627 207 43 41 chr4 27168455 27168981 -157119681 - L1MA6 LINE L1 -4 6296 5745 189 178 0 0 chr4 27168981 27169026 -157119636 + (TA)n Simple_repeat Simple_repeat 2 46 0 1294 130 0 14 chr4 27169026 27169242 -157119420 - L1M2 LINE L1 -498 5793 5581 * 6292 55 0 4 chr4 27169216 27169999 -157118663 - L1PA7 LINE L1 -1 6153 5374 751 224 20 1 chr4 27169999 27170171 -157118491 - L1P1 LINE L1 -557 5598 5425 603 285 12 12 chr4 27170354 27170526 -157118136 - MIR SINE MIR -59 203 32 384 337 54 22 chr4 27170973 27171157 -157117505 + MIR SINE MIR 63 252 -10 2139 134 21 19 chr4 27171714 27172087 -157116575 + THE1C LTR MaLR 2 375 0 213 309 32 0 chr4 27173545 27173639 -157115023 + CT-rich Low_complexity Low_complexity 1 97 0 322 339 16 16 chr4 27173660 27173787 -157114875 - L2 LINE L2 0 3313 3187 7817 268 37 16 chr4 27173886 27176675 -157111987 + L1MA9 LINE L1 7 2851 -4317 * 12255 218 41 14 chr4 27176646 27178204 -157110458 + L1MA9 LINE L1 3073 4587 -2746 2379 148 57 7 chr4 27178204 27178609 -157110053 - MSTA LTR MaLR 0 428 4 12255 218 41 14 chr4 27178609 27179084 -157109578 + L1MA9 LINE L1 4587 5048 -2285 2052 171 62 31 chr4 27179084 27179504 -157109158 - Tigger2a DNA MER2_type 0 434 2 12255 218 41 14 chr4 27179504 27181569 -157107093 + L1MA9 LINE L1 5048 7293 -40 21 36 0 0 chr4 27181570 27181598 -157107064 + AT_rich Low_complexity Low_complexity 1 28 0 745 230 12 0 chr4 27182402 27182567 -157106095 - MER5A DNA MER1_type 0 189 23 227 30 0 30 chr4 27183205 27183238 -157105424 + (CAAAAA)n Simple_repeat Simple_repeat 2 33 0 501 324 39 0 chr4 27184059 27184238 -157104424 + MIR SINE MIR 18 203 -59 2387 98 3 0 chr4 27184279 27184585 -157104077 + AluSp SINE Alu 1 307 -6 276 314 17 8 chr4 27186211 27186329 -157102333 + Charlie7 DNA MER1_type 2 120 -2492 2242 151 21 0 chr4 27186330 27186713 -157101949 + L1MA9 LINE L1 5269 5659 -653 1973 174 73 13 chr4 27186720 27187169 -157101493 + L1MA9 LINE L1 5837 6312 0 240 35 0 0 chr4 27187243 27187272 -157101390 + (TA)n Simple_repeat Simple_repeat 2 30 0 1295 225 79 98 chr4 27187347 27187818 -157100844 - MLT1F1 LTR MaLR 0 567 106 327 169 0 0 chr4 27187843 27187914 -157100748 + (GGATG)n Simple_repeat Simple_repeat 3 73 0 252 233 0 41 chr4 27187916 27187989 -157100673 - MLT1F1 LTR MaLR -485 108 39 2047 157 0 0 chr4 27188000 27188306 -157100356 - AluSx SINE Alu -6 306 1 619 264 124 6 chr4 27188405 27188583 -157100079 - MER58C DNA MER1_type -16 199 1 314 328 25 25 chr4 27188592 27188714 -157099948 + L3 LINE CR1 1343 1464 -113 417 149 201 30 chr4 27188841 27188975 -157099687 - MER103 DNA DNA -7 159 3 238 296 112 20 chr4 27189171 27189269 -157099393 - L2 LINE L2 -5 3267 3161 265 232 0 0 chr4 27189297 27189353 -157099309 + L2 LINE L2 3216 3271 -1 255 140 0 0 chr4 27189424 27189474 -157099188 + (TC)n Simple_repeat Simple_repeat 1 50 0 467 300 74 26 chr4 27190478 27190668 -157097994 - MIR3 SINE MIR -5 203 5 650 197 86 45 chr4 27191050 27191294 -157097368 + MER69 DNA AcHobo 1485 1738 -788 * 1270 289 25 17 chr4 27191280 27191637 -157097025 - MER69 DNA AcHobo -1891 635 276 326 301 39 10 chr4 27191643 27191746 -157096916 - MIR SINE MIR -60 148 43 2202 91 0 23 chr4 27191899 27192208 -157096454 - AluSq SINE Alu -11 302 1 200 309 221 49 chr4 27193284 27193488 -157095174 + L2 LINE L2 2825 3063 -250 203 250 0 0 chr4 27193632 27193672 -157094990 + polypurine Low_complexity Low_complexity 1 40 0 600 141 0 10 chr4 27195917 27196016 -157092646 + MER4A LTR ERV1 1 98 -566 371 96 19 0 chr4 27196016 27196068 -157092594 + MER4A LTR ERV1 261 313 -351 13124 116 97 4 chr4 27196076 27198730 -157089932 - L1PBa LINE L1 -3324 3538 636 632 192 30 84 chr4 27198736 27198939 -157089723 - L1PBa LINE L1 -6669 194 3 357 82 0 0 chr4 27199452 27199501 -157089161 + (GA)n Simple_repeat Simple_repeat 1 49 0 548 267 93 13 chr4 27200355 27200588 -157088074 - MIR SINE MIR -9 253 6 244 327 103 9 chr4 27200864 27200971 -157087691 + L2 LINE L2 3189 3305 -8 396 299 161 19 chr4 27201169 27201547 -157087115 + L1ME4a LINE L1 5406 5837 -284 248 266 202 9 chr4 27202157 27202266 -157086396 - L2 LINE L2 0 3313 3184 311 266 151 7 chr4 27202388 27202527 -157086135 + L1ME4a LINE L1 5960 6118 -3 23 0 0 0 chr4 27202536 27202559 -157086103 + AT_rich Low_complexity Low_complexity 1 23 0 333 0 0 0 chr4 27202695 27202732 -157085930 + (TG)n Simple_repeat Simple_repeat 1 37 0 517 303 0 37 chr4 27204188 27204376 -157084286 - MIR SINE MIR 0 262 82 1986 142 0 25 chr4 27205065 27205382 -157083280 + AluSx SINE Alu 1 309 -3 247 297 11 11 chr4 27206387 27206478 -157082184 + CT-rich Low_complexity Low_complexity 1 91 0 2811 91 11 0 chr4 27206967 27207318 -157081344 + THE1A LTR MaLR 1 355 0 285 308 5 120 chr4 27207566 27207643 -157081019 + MER5A DNA MER1_type 1 85 -104 2258 73 0 53 chr4 27207643 27207946 -157080716 + AluY SINE Alu 1 287 -24 285 308 5 120 chr4 27207946 27208076 -157080586 + MER5A DNA MER1_type 85 184 -5 2316 57 7 3 chr4 27209086 27209369 -157079293 + AluY SINE Alu 1 284 -27 234 0 0 0 chr4 27209373 27209399 -157079263 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1346 144 115 43 chr4 27209707 27209985 -157078677 - MSTA LTR MaLR 0 428 131 2179 162 25 35 chr4 27209995 27210554 -157078108 + MLT2A2 LTR ERVL 1 551 -3 624 124 0 48 chr4 27210561 27210666 -157077996 - MSTA LTR MaLR -328 100 1 297 225 96 66 chr4 27210666 27210891 -157077771 + MLT1L LTR MaLR 345 615 0 212 211 0 0 chr4 27210918 27210956 -157077706 + L2 LINE L2 3192 3229 -84 1127 247 114 97 chr4 27210960 27211386 -157077276 - MLT1J LTR MaLR -40 410 1 447 300 19 71 chr4 27211442 27211586 -157077076 - MIR SINE MIR -17 245 114 2263 102 0 7 chr4 27211586 27211890 -157076772 + AluSq SINE Alu 1 302 -11 447 300 19 71 chr4 27211890 27211955 -157076707 - MIR SINE MIR -148 114 47 273 122 0 0 chr4 27211973 27212014 -157076648 - AluSc SINE Alu -10 289 249 875 243 63 18 chr4 27212260 27212642 -157076020 + LTR50 LTR ERVL 2 451 -344 218 128 43 0 chr4 27214373 27214420 -157074242 - L2 LINE L2 0 3313 3265 251 54 27 0 chr4 27214489 27214526 -157074136 + (GA)n Simple_repeat Simple_repeat 1 38 0 844 131 66 0 chr4 27214587 27214709 -157073953 - FLAM_C SINE Alu -1 132 3 486 208 0 21 chr4 27214748 27214844 -157073818 - MIR SINE MIR -110 152 59 211 322 0 0 chr4 27215030 27215120 -157073542 + (TTA)n Simple_repeat Simple_repeat 1 90 0 2427 48 41 0 chr4 27215273 27215568 -157073094 + AluY SINE Alu 1 307 -4 281 253 13 13 chr4 27216462 27216541 -157072121 + LTR33A LTR ERVL 444 522 -1 212 298 18 0 chr4 27216693 27216750 -157071912 + L2 LINE L2 2994 3051 -221 181 384 68 0 chr4 27216841 27216914 -157071748 - L2 LINE L2 -86 3186 3109 864 248 52 97 chr4 27218048 27218077 -157070585 + MLT1C LTR MaLR 16 45 -422 1646 149 126 0 chr4 27218077 27218338 -157070324 - AluJb SINE Alu -8 294 1 864 248 52 97 chr4 27218338 27218711 -157069951 + MLT1C LTR MaLR 45 400 -67 445 237 111 18 chr4 27218882 27219077 -157069585 - MIR3 SINE MIR -51 211 1 879 280 137 55 chr4 27219233 27219921 -157068741 + L2 LINE L2 2542 3308 -5 717 280 57 5 chr4 27219938 27220185 -157068477 - MIR SINE MIR -1 261 4 208 386 43 57 chr4 27222595 27222805 -157065857 + L2 LINE L2 3024 3230 -42 222 250 52 73 chr4 27223392 27223488 -157065174 + MIR SINE MIR 156 249 -13 233 302 0 62 chr4 27223931 27224027 -157064635 - MIR3 SINE MIR -54 154 84 255 317 30 0 chr4 27224809 27224910 -157063752 + MIR3 SINE MIR 105 208 0 23 0 0 0 chr4 27224967 27224990 -157063672 + AT_rich Low_complexity Low_complexity 1 23 0 2403 119 39 30 chr4 27224991 27225352 -157063310 + THE1B LTR MaLR 1 364 0 22 0 0 0 chr4 27225366 27225388 -157063274 + AT_rich Low_complexity Low_complexity 1 22 0 602 212 118 42 chr4 27226741 27227047 -157061615 + L1ME4a LINE L1 5791 6119 -2 1191 205 151 51 chr4 27227236 27227568 -157061094 + MLT1A1 LTR MaLR 1 365 0 344 278 87 0 chr4 27227650 27227765 -157060897 - LTR33 LTR ERVL -4 517 393 1182 230 72 24 chr4 27227833 27228168 -157060494 + L1ME2 LINE L1 5794 6144 -20 363 349 115 0 chr4 27228191 27228400 -157060262 - LTR33 LTR ERVL -282 239 7 44989 39 1 0 chr4 27229134 27235281 -157053381 - L1PA4 LINE L1 0 6155 2 182 279 115 77 chr4 27236007 27236111 -157052551 - MIR SINE MIR -63 145 38 4843 22 5 7 chr4 27236371 27236927 -157051735 - L1PA3 LINE L1 -108 6047 5493 522 211 29 0 chr4 27237312 27237323 -157051339 + MER5A DNA MER1_type 6 19 -170 205 252 122 37 chr4 27237323 27237430 -157051232 - MER5A DNA MER1_type -2 187 72 1491 214 7 0 chr4 27237583 27237868 -157050794 - AluJo SINE Alu -25 287 1 2094 135 3 0 chr4 27238971 27239275 -157049387 - AluSq SINE Alu -8 305 1 2169 135 3 0 chr4 27239355 27239667 -157048995 - L1PA13 LINE L1 -2 6161 5849 242 218 73 0 chr4 27240679 27240734 -157047928 + L2 LINE L2 3214 3272 0 1978 205 54 14 chr4 27241274 27241718 -157046944 - MLT1C LTR MaLR 0 467 6 195 269 115 77 chr4 27242719 27242823 -157045839 - MIR SINE MIR -63 145 38 1179 275 138 16 chr4 27243205 27243707 -157044955 - MLT1F1 LTR MaLR -3 564 3 472 302 6 19 chr4 27244409 27244568 -157044094 - L2 LINE L2 -1 3312 3156 349 319 34 17 chr4 27244597 27244716 -157043946 + L2 LINE L2 3137 3257 -15 598 319 48 42 chr4 27244764 27245145 -157043517 - L2 LINE L2 -208 3105 2724 301 360 85 9 chr4 27245167 27245287 -157043375 - L2 LINE L2 -696 2618 2509 411 21 0 0 chr4 27245287 27245335 -157043327 + (TG)n Simple_repeat Simple_repeat 2 49 0 301 360 85 9 chr4 27245335 27245425 -157043237 - L2 LINE L2 -805 2509 2392 900 167 19 25 chr4 27245436 27245598 -157043064 - MLT1C LTR MaLR 0 467 307 1445 81 187 8 chr4 27245648 27245921 -157042741 - AluSg1 SINE Alu 0 317 3 983 218 52 65 chr4 27245921 27246228 -157042434 + MLT1A1 LTR MaLR 63 365 0 544 174 18 0 chr4 27246229 27246338 -157042324 - MLT1C LTR MaLR -158 309 199 182 276 11 46 chr4 27246338 27246425 -157042237 - L2 LINE L2 -930 2384 2301 2445 76 0 0 chr4 27247731 27248035 -157040627 - AluSc SINE Alu -5 304 1 646 307 40 9 chr4 27248183 27248411 -157040251 + MIR SINE MIR 12 246 -16 * 857 207 31 47 chr4 27248373 27248566 -157040096 - MIR SINE MIR -24 238 49 22 88 0 0 chr4 27249575 27249632 -157039030 + AT_rich Low_complexity Low_complexity 1 57 0 1678 183 90 29 chr4 27250573 27250917 -157037745 + MLT1A1 LTR MaLR 1 365 0 378 252 37 9 chr4 27251344 27251451 -157037211 + MIR3 SINE MIR 97 206 -2 379 323 41 50 chr4 27251905 27252125 -157036537 + MIR SINE MIR 14 231 -31 225 227 45 15 chr4 27252163 27252229 -157036433 + MIR SINE MIR 171 238 -24 213 330 103 10 chr4 27252290 27252387 -157036275 - MIR SINE MIR -83 179 74 2341 123 123 5 chr4 27252567 27252950 -157035712 - MSTA LTR MaLR 0 428 1 1358 202 34 43 chr4 27253042 27253369 -157035293 - MER33 DNA MER1_type 0 324 1 1286 100 0 6 chr4 27255382 27255562 -157033100 - L1P4 LINE L1 -391 5772 5594 413 345 6 18 chr4 27256068 27256239 -157032423 + GA-rich Low_complexity Low_complexity 6 174 0 192 250 91 0 chr4 27257368 27257412 -157031250 + MIR SINE MIR 123 170 -92 255 229 14 29 chr4 27257944 27258014 -157030648 + CT-rich Low_complexity Low_complexity 1 69 0 384 232 89 27 chr4 27258642 27258754 -157029908 + MER115 DNA AcHobo 489 607 -86 229 274 28 28 chr4 27258774 27258880 -157029782 - L1MC5 LINE L1 -809 7152 7047 637 239 50 25 chr4 27258967 27259205 -157029457 - L1M4 LINE L1 -3724 2422 2179 1198 193 9 21 chr4 27259238 27259471 -157029191 - AluJo SINE Alu -25 287 58 337 197 40 0 chr4 27259472 27259548 -157029114 + Zaphod DNA AcHobo 3953 4031 0 1373 161 49 176 chr4 27260133 27260668 -157027994 + MLT1C LTR MaLR 1 467 0 378 278 154 6 chr4 27261645 27261814 -157026848 + MIR SINE MIR 11 204 -58 230 328 78 16 chr4 27262536 27262664 -157025998 - L2 LINE L2 -5 3267 3132 1618 202 29 61 chr4 27262695 27263105 -157025557 - MLT2C1 LTR ERVL 0 397 1 232 281 22 0 chr4 27263567 27263656 -157025006 + (TA)n Simple_repeat Simple_repeat 2 92 0 376 277 50 7 chr4 27263668 27263809 -157024853 + MER103 DNA DNA 14 160 -6 220 264 44 66 chr4 27263966 27264057 -157024605 - L3 LINE CR1 -17 1560 1472 1320 165 19 30 chr4 27264397 27264663 -157023999 - L1MA9 LINE L1 -114 6198 5936 * 5790 99 4 14 chr4 27264656 27265138 -157023524 - L1PA13 LINE L1 -2 6161 5690 2077 141 3 0 chr4 27265138 27265444 -157023218 - AluSx SINE Alu -5 307 1 5790 99 4 14 chr4 27265444 27265798 -157022864 - L1PA13 LINE L1 -473 5690 5334 1628 152 11 7 chr4 27265795 27266072 -157022590 - L1MA9 LINE L1 -392 5920 5643 * 4621 40 0 0 chr4 27266112 27266636 -157022026 - L1PA4 LINE L1 -3 6152 5629 567 281 64 82 chr4 27266641 27267033 -157021629 + L2 LINE L2 2929 3313 0 2713 121 6 6 chr4 27268207 27268571 -157020091 + THE1B LTR MaLR 1 364 0 607 326 74 18 chr4 27268601 27268994 -157019668 + L2 LINE L2 2187 2601 -713 1620 189 99 19 chr4 27269429 27269751 -157018911 - MER7A DNA MER2_type 0 346 1 663 279 74 10 chr4 27269768 27269782 -157018880 + L1ME3A LINE L1 5634 5646 -524 1139 184 114 0 chr4 27269782 27269983 -157018679 + MER58A DNA MER1_type 1 224 0 663 279 74 10 chr4 27269983 27270266 -157018396 + L1ME3A LINE L1 5646 5950 -220 408 292 139 28 chr4 27270386 27270773 -157017889 - L1M4 LINE L1 -920 5226 4797 302 284 37 0 chr4 27270777 27270858 -157017804 + L2 LINE L2 2622 2705 -609 208 219 0 0 chr4 27270858 27270899 -157017763 + (TG)n Simple_repeat Simple_repeat 2 42 0 195 298 74 33 chr4 27271008 27271129 -157017533 - MIR SINE MIR -112 150 25 23 33 0 0 chr4 27271246 27271276 -157017386 + AT_rich Low_complexity Low_complexity 1 30 0 2381 71 7 23 chr4 27271319 27271629 -157017033 + L1PA10 LINE L1 5862 6166 -2 3279 164 47 16 chr4 27271888 27272462 -157016200 + MER6A DNA MER2_type 1 592 -13 850 206 181 36 chr4 27272911 27273187 -157015475 - LOR1a LTR ERV1 0 497 182 351 211 0 0 chr4 27273172 27273243 -157015419 - LOR1a LTR ERV1 -189 308 238 * 611 297 160 37 chr4 27273335 27273901 -157014761 + L2 LINE L2 2659 3276 -37 553 384 51 6 chr4 27274189 27274525 -157014137 + L2 LINE L2 2456 2806 -508 234 349 47 0 chr4 27274701 27274787 -157013875 + L2 LINE L2 2436 2525 -789 220 271 102 0 chr4 27274796 27274855 -157013807 - MIR SINE MIR -119 89 25 915 223 48 9 chr4 27275153 27275382 -157013280 - MIR SINE MIR -10 252 15 228 354 73 21 chr4 27275560 27275656 -157013006 + MIR SINE MIR 41 141 -67 21 0 0 0 chr4 27275678 27275699 -157012963 + AT_rich Low_complexity Low_complexity 1 21 0 370 343 55 17 chr4 27275962 27276198 -157012464 + MLT1K LTR MaLR 322 566 -22 399 332 69 22 chr4 27276298 27276575 -157012087 - L2 LINE L2 -469 2845 2556 1846 124 0 8 chr4 27277148 27277413 -157011249 - AluSg SINE Alu -8 302 40 21 57 0 0 chr4 27277762 27277797 -157010865 + AT_rich Low_complexity Low_complexity 1 35 0 553 213 44 0 chr4 27277899 27278035 -157010627 + MIR SINE MIR 120 261 -1 1412 288 93 36 chr4 27278475 27279406 -157009256 - L2 LINE L2 -10 3303 675 3419 110 23 6 chr4 27279406 27279889 -157008773 + LTR3b LTR ERVK 1 491 -9 395 119 0 75 chr4 27279889 27279956 -157008706 + LTR3b LTR ERVK 421 482 -18 * 508 125 0 0 chr4 27279932 27280004 -157008658 + LTR3b LTR ERVK 422 493 -7 1238 302 127 28 chr4 27280005 27280587 -157008075 - L2 LINE L2 -2633 681 42 2788 75 29 3 chr4 27280743 27281089 -157007573 - THE1A LTR MaLR 0 355 1 216 267 116 35 chr4 27281179 27281265 -157007397 - MIR SINE MIR -107 155 63 223 288 76 0 chr4 27281371 27281437 -157007225 + MIR SINE MIR 56 126 -136 927 234 154 46 chr4 27281444 27281815 -157006847 - LTR16B LTR ERVL -32 432 22 1731 230 42 14 chr4 27281883 27282116 -157006546 - L1MB5 LINE L1 0 6174 5942 421 279 31 49 chr4 27282116 27282317 -157006345 - L1MC4a LINE L1 -1879 5929 5731 1808 159 46 13 chr4 27282317 27282619 -157006043 - AluSx SINE Alu 0 312 1 421 279 31 49 chr4 27282619 27282643 -157006019 - L1MC4a LINE L1 -2077 5731 5708 213 154 0 0 chr4 27282912 27282951 -157005711 + T-rich Low_complexity Low_complexity 1 39 0 292 323 38 13 chr4 27283017 27283175 -157005487 + L3b LINE CR1 1304 1465 -118 466 291 135 22 chr4 27283457 27283687 -157004975 + MIR SINE MIR 5 260 -2 249 245 286 10 chr4 27283988 27284086 -157004576 + L2 LINE L2 3187 3311 -2 249 277 36 121 chr4 27284342 27284508 -157004154 - MLT1J LTR MaLR -204 307 156 207 162 0 0 chr4 27284548 27284585 -157004077 + CT-rich Low_complexity Low_complexity 3 39 0 218 158 0 123 chr4 27284678 27284735 -157003927 - MIR SINE MIR -56 152 106 2053 121 3 3 chr4 27285012 27285302 -157003360 - AluSx SINE Alu -22 290 1 849 211 6 22 chr4 27285530 27285710 -157002952 + MER5B DNA MER1_type 1 177 -1 292 296 31 0 chr4 27286299 27286397 -157002265 - MER102a DNA MER1_type -9 321 221 1122 162 17 0 chr4 27287002 27287175 -157001487 - L1PB1 LINE L1 0 6151 5976 2229 116 0 3 chr4 27287883 27288186 -157000476 + AluSq SINE Alu 1 302 -11 927 210 46 25 chr4 27289198 27289479 -156999183 - L1MC5 LINE L1 -365 7596 7310 309 240 0 0 chr4 27289479 27289575 -156999087 + CT-rich Low_complexity Low_complexity 2 97 0 426 261 63 9 chr4 27292943 27293054 -156995608 + MIR SINE MIR 30 146 -62 573 266 66 35 chr4 27293349 27293636 -156995026 - MLT1L LTR MaLR -2 613 234 22 0 0 0 chr4 27294046 27294068 -156994594 + AT_rich Low_complexity Low_complexity 1 22 0 209 296 34 54 chr4 27294414 27294474 -156994188 - MIR SINE MIR -3 259 199 1574 202 10 3 chr4 27294474 27294766 -156993896 - AluJb SINE Alu -18 294 1 209 296 34 54 chr4 27294766 27294896 -156993766 - MIR SINE MIR -63 199 12 280 294 157 0 chr4 27294929 27295031 -156993631 - L2 LINE L2 -2 3270 3153 303 159 302 0 chr4 27295295 27295358 -156993304 - MER20 DNA MER1_type -137 82 1 224 317 29 19 chr4 27295774 27295878 -156992784 + MIR3 SINE MIR 83 187 -21 189 0 0 0 chr4 27296082 27296103 -156992559 + (TC)n Simple_repeat Simple_repeat 1 21 0 311 135 0 54 chr4 27296223 27296297 -156992365 - L1MA8 LINE L1 -4 6287 6218 210 188 20 79 chr4 27296487 27296588 -156992074 + (TCTCTG)n Simple_repeat Simple_repeat 2 96 0 202 281 18 0 chr4 27296607 27296664 -156991998 + CT-rich Low_complexity Low_complexity 1 58 0 679 185 23 0 chr4 27296766 27296896 -156991766 + L1M4c LINE L1 2400 2532 -4317 * 3371 259 28 9 chr4 27296867 27297867 -156990795 + L1M4c LINE L1 2754 3776 -3072 2732 164 5 87 chr4 27298301 27298867 -156989795 + MLT2B1 LTR ERVL 1 520 0 527 312 19 13 chr4 27298871 27299025 -156989637 + MIR SINE MIR 24 178 -84 252 284 61 40 chr4 27299803 27299951 -156988711 - L1ME3A LINE L1 -218 5952 5802 * 262 221 141 80 chr4 27299932 27300095 -156988567 - L1P4 LINE L1 -383 5778 5606 236 253 20 116 chr4 27301019 27301165 -156987497 - MIR3 SINE MIR -75 133 2 541 255 7 26 chr4 27301355 27301508 -156987154 + MIR SINE MIR 31 180 -82 503 250 129 21 chr4 27301527 27301667 -156986995 + MER5A DNA MER1_type 32 186 -3 283 219 14 55 chr4 27301673 27301746 -156986916 + MIR SINE MIR 193 262 0 216 279 44 15 chr4 27301870 27301938 -156986724 + L2 LINE L2 3210 3279 -34 468 51 0 0 chr4 27302665 27302724 -156985938 + (CAT)n Simple_repeat Simple_repeat 2 60 0 468 289 51 39 chr4 27302726 27302942 -156985720 - MIR SINE MIR -13 249 33 803 264 136 51 chr4 27303919 27304389 -156984273 + MLT1J LTR MaLR 1 510 -1 335 200 80 0 chr4 27304391 27304466 -156984196 - MER117 DNA MER1_type -113 84 4 264 308 60 34 chr4 27304495 27304612 -156984050 + L2 LINE L2 3153 3272 0 1016 216 134 20 chr4 27304804 27305058 -156983604 + MLT1C LTR MaLR 185 467 0 241 353 144 7 chr4 27305438 27305577 -156983085 - MER5A DNA MER1_type -23 166 9 288 0 0 0 chr4 27305991 27306023 -156982639 + (CA)n Simple_repeat Simple_repeat 2 33 0 418 150 110 20 chr4 27306338 27306438 -156982224 + MLT1B-int LTR MaLR 1262 1370 -1 899 175 26 0 chr4 27306442 27306596 -156982066 + MLT1B LTR MaLR 6 163 -227 292 133 0 0 chr4 27306696 27306741 -156981921 - Alu SINE Alu -255 47 3 411 276 67 0 chr4 27307315 27307420 -156981242 - MIR SINE MIR -68 140 29 199 251 95 153 chr4 27307577 27307968 -156980694 - L2 LINE L2 -1 3271 2904 306 317 183 24 chr4 27308168 27308496 -156980166 - L2 LINE L2 -550 2764 2385 427 296 75 5 chr4 27308852 27309038 -156979624 + MLT1L LTR MaLR 413 611 -4 2114 95 87 38 chr4 27309224 27309571 -156979091 + THE1B LTR MaLR 1 364 0 631 277 43 0 chr4 27309571 27309755 -156978907 + MIR3 SINE MIR 7 198 -10 193 247 210 0 chr4 27310170 27310251 -156978411 + MIR SINE MIR 158 255 -7 603 308 112 58 chr4 27310800 27311401 -156977261 + L2 LINE L2 2624 3272 0 426 333 41 7 chr4 27312334 27312481 -156976181 - MIR3 SINE MIR -5 203 52 244 277 0 109 chr4 27312573 27312692 -156975970 + L2 LINE L2 2932 3037 -235 794 181 52 7 chr4 27314257 27314412 -156974250 - MIR SINE MIR -61 201 40 347 252 44 52 chr4 27314586 27314721 -156973941 + L2 LINE L2 3179 3312 -1 483 101 0 0 chr4 27314820 27314899 -156973763 + (TG)n Simple_repeat Simple_repeat 2 80 0 247 258 56 22 chr4 27315560 27315649 -156973013 - MIR3 SINE MIR -23 185 94 688 266 62 37 chr4 27316695 27316939 -156971723 + MIR SINE MIR 5 254 -8 24 39 0 0 chr4 27318024 27318050 -156970612 + AT_rich Low_complexity Low_complexity 1 26 0 510 309 88 34 chr4 27319876 27320264 -156968398 + MLT1L LTR MaLR 196 604 -11 225 180 56 101 chr4 27320265 27320354 -156968308 - MLT1J2 LTR MaLR -1 449 365 257 320 20 0 chr4 27320427 27320527 -156968135 - MLT1J2 LTR MaLR -238 212 111 317 239 57 0 chr4 27320726 27320814 -156967848 + L1ME3A LINE L1 6078 6170 0 1845 175 3 14 chr4 27320819 27321116 -156967546 + AluJo SINE Alu 1 294 -18 2096 201 29 12 chr4 27321256 27321675 -156966987 - MSTB LTR MaLR 0 426 1 484 218 26 26 chr4 27322257 27322413 -156966249 + MER103 DNA DNA 1 156 -10 271 305 85 25 chr4 27322502 27322620 -156966042 + MIR3 SINE MIR 30 154 -54 252 184 26 79 chr4 27322734 27322810 -156965852 + MLT1L LTR MaLR 1 72 -543 210 118 0 0 chr4 27323321 27323355 -156965307 + (GGGA)n Simple_repeat Simple_repeat 1 34 0 265 275 22 0 chr4 27325460 27325551 -156963111 + (TG)n Simple_repeat Simple_repeat 2 94 0 299 206 309 0 chr4 27325921 27326018 -156962644 + L2 LINE L2 3146 3272 0 508 270 137 17 chr4 27327430 27327730 -156960932 - L2 LINE L2 -169 3144 2809 1035 127 4 0 chr4 27327855 27328098 -156960564 + (TA)n Simple_repeat Simple_repeat 1 245 0 331 240 168 24 chr4 27328965 27329090 -156959572 - MIR SINE MIR -100 162 20 326 191 16 0 chr4 27330274 27330337 -156958325 - MLT1J2 LTR MaLR -44 406 343 342 233 63 69 chr4 27330383 27330542 -156958120 - MLT1J2 LTR MaLR 0 450 293 349 284 95 34 chr4 27330681 27330829 -156957833 - MIR SINE MIR -71 191 35 447 268 14 49 chr4 27331745 27331887 -156956775 + MIR SINE MIR 123 259 -3 263 315 105 11 chr4 27333099 27333280 -156955382 - MIR SINE MIR -29 233 36 403 162 90 27 chr4 27334511 27334622 -156954040 - MER106B DNA MER1_type 0 1059 942 278 257 10 69 chr4 27334618 27334719 -156953943 - MER106B DNA MER1_type -956 103 9 * 335 314 65 16 chr4 27335150 27335274 -156953388 + MIR SINE MIR 96 225 -37 188 237 0 0 chr4 27335488 27335526 -156953136 - L2 LINE L2 -37 3235 3198 513 261 76 28 chr4 27335544 27335867 -156952795 - MLT1G3 LTR MaLR 0 595 153 216 191 0 0 chr4 27335869 27335911 -156952751 + GA-rich Low_complexity Low_complexity 2 43 0 206 389 33 0 chr4 27336083 27336173 -156952489 - MIR SINE MIR -81 181 89 261 356 148 0 chr4 27336772 27336873 -156951789 + MIR SINE MIR 19 134 -74 534 288 13 7 chr4 27338181 27338334 -156950328 + MIR SINE MIR 108 261 -1 322 325 0 25 chr4 27338418 27338538 -156950124 + (ATGGTG)n Simple_repeat Simple_repeat 6 122 0 738 200 9 4 chr4 27338540 27338778 -156949884 + (ATG)n Simple_repeat Simple_repeat 1 239 0 370 305 28 0 chr4 27338947 27339088 -156949574 - LTR33 LTR ERVL -50 471 327 332 202 37 46 chr4 27339142 27339251 -156949411 - LTR33 LTR ERVL -281 240 133 856 279 167 35 chr4 27339979 27340262 -156948400 + L2 LINE L2 2853 3206 -107 2954 118 12 2 chr4 27340262 27340685 -156947977 + MSTA LTR MaLR 1 427 -1 856 279 167 35 chr4 27340685 27340803 -156947859 + L2 LINE L2 3206 3307 -6 267 79 0 0 chr4 27340893 27340931 -156947731 + (CA)n Simple_repeat Simple_repeat 1 38 0 24 0 0 0 chr4 27341086 27341110 -156947552 + AT_rich Low_complexity Low_complexity 1 24 0 33 0 0 0 chr4 27341633 27341666 -156946996 + AT_rich Low_complexity Low_complexity 1 33 0 1915 177 34 11 chr4 27342237 27342587 -156946075 - MLT1A1 LTR MaLR -7 358 1 353 294 238 0 chr4 27342588 27342731 -156945931 - MER5A DNA MER1_type 0 189 13 523 267 82 67 chr4 27343125 27343380 -156945282 + MIR SINE MIR 3 261 -1 2373 250 15 10 chr4 27343667 27344275 -156944387 + L1ME2 LINE L1 5483 6093 -71 229 232 137 11 chr4 27344402 27344497 -156944165 + L1MC4 LINE L1 7924 8030 -12 520 304 38 71 chr4 27344560 27345064 -156943598 + L2 LINE L2 2791 3272 0 210 37 0 0 chr4 27345158 27345185 -156943477 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 382 216 0 0 chr4 27345505 27345579 -156943083 - MIR SINE MIR -68 140 67 262 307 57 11 chr4 27345632 27345720 -156942942 - L2 LINE L2 -29 3243 3152 1058 250 156 9 chr4 27345781 27346121 -156942541 - LTR16C LTR ERVL -2 489 100 332 109 36 0 chr4 27346416 27346471 -156942191 + THE1C LTR MaLR 319 375 0 459 268 134 0 chr4 27346504 27346683 -156941979 - HAL1 LINE L1 -733 1774 1572 522 367 102 35 chr4 27346687 27347120 -156941542 - L1MEd LINE L1 -5655 464 3 211 328 0 0 chr4 27347610 27347668 -156940994 + MIR SINE MIR 48 105 -157 1366 245 46 11 chr4 27347671 27348319 -156940343 - MER63C DNA MER1_type 0 930 224 1629 123 58 120 chr4 27348319 27348719 -156939943 + THE1C LTR MaLR 1 375 0 695 232 41 14 chr4 27348719 27348937 -156939725 - MER63C DNA MER1_type -702 228 5 25 0 0 0 chr4 27349697 27349722 -156938940 + AT_rich Low_complexity Low_complexity 1 25 0 373 134 0 0 chr4 27349744 27349811 -156938851 - L1MC2 LINE L1 -1 6343 6277 218 341 0 12 chr4 27349927 27350009 -156938653 + L2 LINE L2 3192 3272 0 192 294 153 0 chr4 27350514 27350599 -156938063 - L2 LINE L2 -31 3241 3144 2030 170 10 31 chr4 27350875 27351292 -156937370 + MLT2D LTR ERVL 1 408 -6 194 297 109 0 chr4 27351324 27351388 -156937274 + MIR3 SINE MIR 132 202 -6 344 295 171 39 chr4 27351583 27351764 -156936898 - MIR SINE MIR -42 220 15 1240 146 139 38 chr4 27352310 27352597 -156936065 - THE1C LTR MaLR 0 375 60 1764 103 126 8 chr4 27353055 27353318 -156935344 - AluSg1 SINE Alu -15 294 1 189 74 0 0 chr4 27353604 27353631 -156935031 + (GA)n Simple_repeat Simple_repeat 1 27 0 854 276 91 16 chr4 27353637 27354068 -156934594 + LTR16B LTR ERVL 1 463 -1 213 312 21 21 chr4 27354099 27354192 -156934470 + MIR SINE MIR 96 188 -74 453 201 250 7 chr4 27356177 27356321 -156932341 + MIR3 SINE MIR 16 194 -14 516 268 52 20 chr4 27356940 27357093 -156931569 - MIR SINE MIR 0 262 105 681 231 115 60 chr4 27357106 27357570 -156931092 - LTR33A LTR ERVL -2 521 8 613 262 92 0 chr4 27358105 27358311 -156930351 - LTR16C LTR ERVL -2 489 265 305 265 21 21 chr4 27358999 27359145 -156929517 + HERVL68 LTR ERVL 2723 4660 -257 194 383 56 0 chr4 27359342 27359449 -156929213 + L2 LINE L2 3141 3253 -19 868 258 77 14 chr4 27360919 27361140 -156927522 + MIR SINE MIR 7 241 -21 392 293 16 8 chr4 27362232 27362355 -156926307 - MIR SINE MIR -65 143 20 204 206 64 19 chr4 27362997 27363075 -156925587 - MIR SINE MIR -73 135 61 523 147 35 86 chr4 27364262 27364378 -156924284 + MER81 DNA DNA 1 110 -4 235 0 0 54 chr4 27364931 27364968 -156923694 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 374 323 36 55 chr4 27365823 27366043 -156922619 - L1MC4 LINE L1 -1 8041 7826 3476 222 85 25 chr4 27366101 27368060 -156920602 - L1ME2 LINE L1 -23 6141 4063 641 180 94 144 chr4 27368065 27368321 -156920341 + LTR40a LTR ERVL 6 248 -271 1022 188 21 59 chr4 27368333 27368514 -156920148 - MLT1A2 LTR MaLR -144 230 59 2137 131 48 31 chr4 27368514 27368872 -156919790 - THE1B LTR MaLR 0 364 1 1022 188 21 59 chr4 27368872 27368929 -156919733 - MLT1A2 LTR MaLR -315 59 1 1764 244 102 7 chr4 27368944 27369521 -156919141 - L1ME2 LINE L1 -2567 3579 2948 306 0 0 0 chr4 27370382 27370416 -156918246 + (CA)n Simple_repeat Simple_repeat 2 35 0 249 83 0 0 chr4 27370466 27370502 -156918160 + (CA)n Simple_repeat Simple_repeat 1 36 0 207 69 0 0 chr4 27370546 27370575 -156918087 + (CA)n Simple_repeat Simple_repeat 2 30 0 412 164 0 0 chr4 27370647 27370708 -156917954 - MER5B DNA MER1_type -5 173 113 2558 248 53 18 chr4 27370708 27371523 -156917139 + L1ME3A LINE L1 5328 6170 0 401 268 49 24 chr4 27371523 27371646 -156917016 - MER5B DNA MER1_type -48 130 5 371 299 51 65 chr4 27371667 27371884 -156916778 + MIR SINE MIR 34 247 -15 363 311 80 0 chr4 27372658 27372809 -156915853 + MIR3 SINE MIR 30 192 -16 276 278 185 0 chr4 27374907 27375015 -156913647 - MLT1L LTR MaLR 0 615 488 * 348 253 0 22 chr4 27375008 27375099 -156913563 - MLT1H1 LTR MaLR -444 111 23 277 233 0 0 chr4 27375118 27375178 -156913484 + MLT1H LTR MaLR 477 536 -13 182 295 123 57 chr4 27375841 27375963 -156912699 - L2 LINE L2 -7 3265 3136 450 267 30 0 chr4 27376016 27376117 -156912545 - L2 LINE L2 -10 3303 3200 770 300 99 0 chr4 27376306 27376599 -156912063 + LTR16C LTR ERVL 139 460 -31 22 80 0 0 chr4 27377659 27377709 -156910953 + AT_rich Low_complexity Low_complexity 1 50 0 1815 97 0 50 chr4 27377891 27378225 -156910437 + AluSx SINE Alu 1 319 0 1379 245 34 58 chr4 27378230 27378642 -156910020 + MLT1J LTR MaLR 110 511 0 704 257 68 42 chr4 27378644 27378955 -156909707 + MER102b DNA MER1_type 23 341 0 252 365 9 19 chr4 27379182 27379289 -156909373 - MIR SINE MIR -68 140 35 216 0 0 0 chr4 27379369 27379393 -156909269 + (A)n Simple_repeat Simple_repeat 1 24 0 243 264 14 42 chr4 27379601 27379673 -156908989 + L2 LINE L2 3231 3300 -13 180 0 0 0 chr4 27379673 27379693 -156908969 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 1017 254 44 84 chr4 27381495 27381901 -156906761 + LTR16B LTR ERVL 1 390 -74 254 236 364 0 chr4 27382100 27382210 -156906452 - L2 LINE L2 -370 2944 2795 295 317 17 17 chr4 27382483 27382603 -156906059 + MIR SINE MIR 35 154 -108 310 279 0 0 chr4 27382613 27382681 -156905981 - MIR SINE MIR -1 261 194 525 310 14 8 chr4 27382934 27383084 -156905578 - MIR SINE MIR -63 145 17 478 316 26 7 chr4 27383234 27383386 -156905276 - L2 LINE L2 0 3272 3118 207 324 15 0 chr4 27383914 27383982 -156904680 + MIR SINE MIR 194 262 0 395 276 29 9 chr4 27385245 27385391 -156903271 - MIR SINE MIR -63 145 12 423 0 0 0 chr4 27385472 27385519 -156903143 + (CA)n Simple_repeat Simple_repeat 1 47 0 224 218 36 18 chr4 27385683 27385738 -156902924 - L2 LINE L2 -25 3247 3192 220 330 77 0 chr4 27386142 27386233 -156902429 + L2 LINE L2 3202 3299 -14 267 103 0 0 chr4 27386233 27386272 -156902390 + (TGAA)n Simple_repeat Simple_repeat 4 42 0 281 328 12 20 chr4 27386940 27387089 -156901573 + GA-rich Low_complexity Low_complexity 4 242 0 204 146 0 24 chr4 27387690 27387731 -156900931 + (TG)n Simple_repeat Simple_repeat 2 41 0 198 91 0 0 chr4 27387930 27387963 -156900699 + (CA)n Simple_repeat Simple_repeat 2 34 0 2276 143 69 101 chr4 27388435 27389069 -156899593 + LTR18B LTR ERVL 1 614 0 331 291 45 18 chr4 27389177 27389287 -156899375 + MIR SINE MIR 77 189 -73 579 328 108 11 chr4 27389411 27389762 -156898900 + L3 LINE CR1 1128 1512 -65 1077 269 166 9 chr4 27390264 27390295 -156898367 + LTR33A LTR ERVL 1 26 -497 1381 194 10 102 chr4 27390295 27390697 -156897965 - MLT1A1 LTR MaLR 0 365 1 1077 269 166 9 chr4 27390697 27391104 -156897558 + LTR33A LTR ERVL 26 508 -15 189 234 0 0 chr4 27392095 27392159 -156896503 + (CCA)n Simple_repeat Simple_repeat 1 64 0 2113 102 3 0 chr4 27392476 27392769 -156895893 - AluSq SINE Alu -19 294 1 583 268 80 65 chr4 27392946 27393413 -156895249 - LTR33A LTR ERVL -17 506 20 316 340 115 31 chr4 27393558 27394011 -156894651 - L2 LINE L2 -453 2861 2371 1854 179 53 68 chr4 27394810 27395284 -156893378 - MLT1C LTR MaLR 0 467 1 1183 190 14 137 chr4 27395546 27395962 -156892700 - MLT1A1 LTR MaLR 0 365 1 528 259 41 35 chr4 27396036 27396206 -156892456 - MIR3 SINE MIR -7 201 31 287 309 140 22 chr4 27396795 27396931 -156891731 - MIR3 SINE MIR -6 202 51 2171 230 74 25 chr4 27396999 27397552 -156891110 + MLT1E LTR MaLR 1 580 -13 946 179 51 64 chr4 27397676 27397910 -156890752 - MIR SINE MIR -1 261 31 498 219 118 22 chr4 27398024 27398202 -156890460 + MIR SINE MIR 63 257 -5 5812 49 1 23 chr4 27398471 27399208 -156889454 - L1PA3 LINE L1 -3 6152 5432 691 251 11 38 chr4 27399210 27399393 -156889269 - MER5B DNA MER1_type 0 178 1 220 214 0 0 chr4 27399702 27399744 -156888918 + CT-rich Low_complexity Low_complexity 1 42 0 354 221 55 24 chr4 27399874 27400001 -156888661 - HAL1b LINE L1 -887 461 331 225 291 57 7 chr4 27400169 27400310 -156888352 - L1MEd LINE L1 -5002 1117 970 2072 139 67 14 chr4 27400494 27400840 -156887822 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr4 27401319 27401340 -156887322 + AT_rich Low_complexity Low_complexity 1 21 0 5509 134 12 22 chr4 27401340 27402320 -156886342 - L1MA4A LINE L1 0 6303 5197 2396 111 3 37 chr4 27402421 27402798 -156885864 - THE1B LTR MaLR 0 364 1 24 0 0 0 chr4 27403136 27403160 -156885502 + AT_rich Low_complexity Low_complexity 1 24 0 322 272 25 0 chr4 27404153 27404234 -156884428 - MIR3 SINE MIR -6 202 120 661 87 0 0 chr4 27454407 27454499 -156834163 + THE1B LTR MaLR 273 364 0 6718 108 48 48 chr4 27454499 27455625 -156833037 + THE1B-int LTR MaLR 1 1126 -454 820 88 0 0 chr4 27455725 27455827 -156832835 - AluJ/FLAM SINE Alu -210 102 1 186 103 0 0 chr4 27458185 27458214 -156830448 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 486 268 0 24 chr4 27460039 27460166 -156828496 - MLT1K LTR MaLR -349 239 116 1801 65 0 4 chr4 27460332 27460561 -156828101 + AluY SINE Alu 1 228 -83 305 311 89 0 chr4 27460642 27460755 -156827907 + MIR SINE MIR 22 143 -65 24 0 0 0 chr4 27460834 27460858 -156827804 + AT_rich Low_complexity Low_complexity 1 24 0 686 303 52 35 chr4 27460861 27461288 -156827374 - LTR33 LTR ERVL -2 519 9 1522 144 60 4 chr4 27461292 27461542 -156827120 + AluSx SINE Alu 1 264 -48 1015 63 0 0 chr4 27461909 27462036 -156826626 + AluY SINE Alu 184 310 -1 2195 84 0 3 chr4 27462543 27462827 -156825835 - AluSx SINE Alu -7 305 23 709 270 35 5 chr4 27463782 27463982 -156824680 - MER63A DNA MER1_type -4 206 1 27 0 0 0 chr4 27464429 27464456 -156824206 + AT_rich Low_complexity Low_complexity 1 27 0 2257 121 0 0 chr4 27464643 27464950 -156823712 + AluSx SINE Alu 1 307 -5 589 236 14 40 chr4 27465095 27465243 -156823419 - MIR SINE MIR -111 151 8 268 291 97 29 chr4 27465366 27465572 -156823090 + L1ME LINE L1 5677 5896 -274 1989 162 26 0 chr4 27466404 27466743 -156821919 - MER7A DNA MER2_type 0 346 1 415 358 52 0 chr4 27467407 27467541 -156821121 + L3 LINE CR1 1434 1574 -3 205 300 0 17 chr4 27468062 27468122 -156820540 - L3 LINE CR1 -1 1576 1518 199 333 0 0 chr4 27468732 27468804 -156819858 + MIR SINE MIR 179 250 -12 1365 205 36 8 chr4 27469712 27470103 -156818559 - MER113 DNA MER1_type? -47 474 73 413 83 0 0 chr4 27470103 27470163 -156818499 + Alu SINE Alu 1 60 -251 1861 99 7 0 chr4 27470263 27470546 -156818116 - L1P4 LINE L1 -476 5690 5406 7894 188 30 33 chr4 27470547 27473081 -156815581 - L1PA15-16 LINE L1 -4546 2303 1 418 362 181 0 chr4 27473108 27473340 -156815322 + L2 LINE L2 2989 3262 -10 442 290 34 34 chr4 27473749 27473925 -156814737 - MER5B DNA MER1_type 0 178 3 795 283 120 33 chr4 27474227 27474619 -156814043 - L2 LINE L2 -6 3307 2882 230 290 16 0 chr4 27474609 27474671 -156813991 + MIR SINE MIR 91 153 -109 * 322 327 19 10 chr4 27474915 27475019 -156813643 - MIR SINE MIR -63 145 41 203 233 0 23 chr4 27475939 27475982 -156812680 - L2 LINE L2 -17 3255 3214 232 171 0 0 chr4 27476043 27476084 -156812578 - MLT2B1 LTR ERVL 0 554 514 1752 210 21 59 chr4 27476135 27476606 -156812056 - MLT2B1 LTR ERVL -67 453 1 700 190 19 102 chr4 27477013 27477229 -156811433 - MER58C DNA MER1_type -16 199 2 181 132 132 0 chr4 27477291 27477329 -156811333 - L2 LINE L2 0 3272 3230 325 283 10 30 chr4 27478020 27478119 -156810543 + MIR SINE MIR 46 142 -120 438 129 53 18 chr4 27478256 27478427 -156810235 + (TA)n Simple_repeat Simple_repeat 1 177 0 181 57 57 0 chr4 27478439 27478474 -156810188 + (TA)n Simple_repeat Simple_repeat 2 38 0 300 160 217 75 chr4 27479057 27479163 -156809499 - MIR3 SINE MIR -6 202 82 257 289 117 107 chr4 27479217 27479525 -156809137 - L2 LINE L2 -19 3253 2943 201 258 30 0 chr4 27481198 27481264 -156807398 + (CAA)n Simple_repeat Simple_repeat 2 69 0 247 218 73 0 chr4 27482477 27482532 -156806130 + L2 LINE L2 3214 3272 0 1794 219 47 7 chr4 27483072 27483516 -156805146 - MLT1C LTR MaLR 0 467 6 207 305 85 76 chr4 27484151 27484269 -156804393 + L2 LINE L2 3144 3262 -10 505 257 56 0 chr4 27484659 27484803 -156803859 + MIR SINE MIR 41 192 -70 275 241 181 0 chr4 27486047 27486130 -156802532 + L3 LINE CR1 896 993 -584 377 305 149 50 chr4 27486160 27486481 -156802181 + L2 LINE L2 2915 3267 -5 355 302 93 22 chr4 27487143 27487282 -156801380 + L2 LINE L2 2918 3066 -206 2313 105 0 0 chr4 27488280 27488584 -156800078 + AluSq SINE Alu 1 304 -9 2224 92 0 0 chr4 27489184 27489466 -156799196 + AluSx SINE Alu 1 282 -30 267 103 0 0 chr4 27489470 27489509 -156799153 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 344 315 64 41 chr4 27489724 27489943 -156798719 - MARNA DNA Mariner -348 238 15 430 247 115 75 chr4 27490524 27490698 -156797964 + MIR SINE MIR 6 186 -76 362 306 131 0 chr4 27490698 27490858 -156797804 - MIR SINE MIR -15 247 67 367 192 0 41 chr4 27491221 27491294 -156797368 - MER8 DNA MER2_type 0 239 170 * 2378 154 4 41 chr4 27491282 27491744 -156796918 + Tigger2 DNA MER2_type 2273 2717 -1 264 107 0 126 chr4 27492016 27492119 -156796543 + (TAAAA)n Simple_repeat Simple_repeat 3 92 0 591 304 90 67 chr4 27492159 27492827 -156795835 - MER21B LTR ERV1 -157 706 24 261 0 0 0 chr4 27493586 27493615 -156795047 + (A)n Simple_repeat Simple_repeat 1 29 0 277 397 35 0 chr4 27493672 27493788 -156794874 + MIR3 SINE MIR 65 184 -24 220 146 83 0 chr4 27493913 27493961 -156794701 + L2 LINE L2 2450 2501 -813 261 0 0 0 chr4 27494288 27494317 -156794345 + (A)n Simple_repeat Simple_repeat 1 29 0 433 310 35 0 chr4 27494373 27494489 -156794173 + MIR3 SINE MIR 65 184 -24 241 289 26 13 chr4 27494492 27494568 -156794094 + MIR SINE MIR 57 133 -75 * 707 217 190 0 chr4 27494553 27494774 -156793888 + L2 LINE L2 2360 2622 -692 507 196 36 58 chr4 27494825 27494963 -156793699 - MER33 DNA MER1_type -189 135 1 354 313 41 34 chr4 27495862 27496009 -156792653 - MIR3 SINE MIR -7 201 54 1236 148 37 25 chr4 27496386 27496629 -156792033 + THE1C LTR MaLR 1 246 -129 3046 106 4 9 chr4 27496732 27497185 -156791477 + THE1C-int LTR MaLR 1130 1580 0 2216 97 86 17 chr4 27497186 27497536 -156791126 + THE1C LTR MaLR 2 375 0 244 324 54 14 chr4 27498813 27498887 -156789775 - MIR SINE MIR -136 126 50 392 314 19 44 chr4 27499054 27499213 -156789449 + L2 LINE L2 3110 3264 -8 198 297 55 22 chr4 27499786 27499877 -156788785 + L3 LINE CR1 1147 1240 -337 263 395 25 62 chr4 27500034 27500310 -156788352 + L2 LINE L2 2991 3256 -16 223 271 12 47 chr4 27501683 27501768 -156786894 - MIR SINE MIR -80 128 47 1283 204 37 79 chr4 27502419 27502826 -156785836 - MLT1B LTR MaLR 0 390 1 418 265 14 126 chr4 27503048 27503271 -156785391 + L2 LINE L2 3075 3272 0 504 301 23 10 chr4 27503287 27503466 -156785196 + MIR3 SINE MIR 3 176 -32 310 238 48 38 chr4 27504217 27504322 -156784340 + MIR SINE MIR 110 215 -47 1752 120 25 15 chr4 27504604 27504878 -156783784 - AluSx SINE Alu -9 303 27 226 292 14 14 chr4 27505252 27505324 -156783338 + MIR SINE MIR 68 139 -123 208 421 95 0 chr4 27506867 27507088 -156781574 + L2 LINE L2 2232 2473 -841 810 228 5 138 chr4 27507273 27507663 -156780999 + MLT1A1 LTR MaLR 19 356 -9 741 297 62 58 chr4 27508168 27508589 -156780073 - LTR33 LTR ERVL 0 521 96 2288 96 0 3 chr4 27508589 27508881 -156779781 - AluSg SINE Alu -19 291 1 741 297 62 58 chr4 27508881 27508978 -156779684 - LTR33 LTR ERVL -425 96 1 423 321 123 14 chr4 27509134 27509346 -156779316 + MIR SINE MIR 25 259 -3 333 226 26 116 chr4 27509493 27509683 -156778979 - Charlie4a DNA MER1_type -2 506 334 354 319 29 143 chr4 27509832 27510246 -156778416 - L2 LINE L2 0 3272 2906 604 340 44 10 chr4 27510640 27510843 -156777819 + MIR SINE MIR 46 255 -7 966 100 0 0 chr4 27512183 27512323 -156776339 + (TTTC)n Simple_repeat Simple_repeat 2 141 0 7066 62 5 0 chr4 27512325 27513439 -156775223 - L1PA7 LINE L1 -8 6146 5031 214 307 39 39 chr4 27513451 27513578 -156775084 + MIR3 SINE MIR 54 180 -28 258 324 0 0 chr4 27513999 27514067 -156774595 + L2 LINE L2 3205 3272 0 278 338 106 25 chr4 27514677 27514875 -156773787 - MIR SINE MIR -48 214 1 263 282 130 8 chr4 27515081 27515212 -156773450 - L2 LINE L2 0 3313 3167 259 226 107 0 chr4 27516197 27516281 -156772381 - MER5A DNA MER1_type -85 104 12 499 224 43 149 chr4 27517236 27517491 -156771171 + MIR SINE MIR 15 242 -20 812 233 28 19 chr4 27517526 27517741 -156770921 - MIR SINE MIR -45 217 1 183 80 0 0 chr4 27517754 27517779 -156770883 + (CTA)n Simple_repeat Simple_repeat 3 27 0 272 290 30 20 chr4 27517779 27517879 -156770783 - MIR SINE MIR -161 101 1 216 67 0 0 chr4 27518252 27518282 -156770380 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 733 311 57 4 chr4 27519919 27520167 -156768495 + L2 LINE L2 2600 2860 -454 680 263 104 43 chr4 27520178 27520505 -156768157 + L2 LINE L2 2966 3312 -1 13457 237 37 22 chr4 27520586 27525525 -156763137 - L1MA4A LINE L1 -4 7001 2013 1276 195 27 16 chr4 27525528 27525784 -156762878 - L1MA4A LINE L1 -6587 262 4 276 371 101 45 chr4 27525950 27526656 -156762006 - L2 LINE L2 -337 2977 2233 7728 241 75 31 chr4 27526673 27533211 -156755451 + L1PBa LINE L1 3 5995 -867 234 105 0 0 chr4 27533212 27533250 -156755412 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 282 0 0 0 chr4 27533293 27533326 -156755336 + L1PB2 LINE L1 5867 5899 -252 692 270 40 26 chr4 27533682 27533908 -156754754 - MLT1H1 LTR MaLR 0 555 327 186 172 0 47 chr4 27533926 27533990 -156754672 + CT-rich Low_complexity Low_complexity 2 62 0 251 221 128 35 chr4 27534067 27534153 -156754509 - MLT1H1 LTR MaLR -375 174 81 270 298 46 46 chr4 27535900 27536031 -156752631 - L3 LINE CR1 -127 1450 1320 234 376 43 6 chr4 27536050 27536212 -156752450 + MIR SINE MIR 21 188 -74 373 373 55 7 chr4 27536601 27536872 -156751790 + L2 LINE L2 2352 2635 -679 306 0 0 0 chr4 27538147 27538181 -156750481 + (TG)n Simple_repeat Simple_repeat 1 34 0 381 167 0 15 chr4 27538498 27538564 -156750098 + MER105 DNA DNA 139 203 -1 302 413 32 0 chr4 27538858 27539013 -156749649 - L3 LINE CR1 -19 1558 1399 354 332 33 70 chr4 27539308 27539552 -156749110 - HERVL40 LTR ERVL -345 2692 2458 290 222 42 0 chr4 27540015 27540087 -156748575 - HERVL40 LTR ERVL -1510 4020 3946 4431 285 59 6 chr4 27540092 27541349 -156747313 - HERVL40 LTR ERVL -1685 3845 2522 2938 280 36 47 chr4 27541348 27542086 -156746576 - HERVL40 LTR ERVL -3919 1611 887 * 186 43 0 0 chr4 27542086 27542109 -156746553 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 2938 280 36 47 chr4 27542109 27542430 -156746232 - HERVL40 LTR ERVL -4643 887 564 646 260 27 130 chr4 27542468 27542837 -156745825 - HERVL40 LTR ERVL -4960 570 240 419 286 143 19 chr4 27542852 27543062 -156745600 - L2 LINE L2 0 3313 3078 201 202 12 36 chr4 27543062 27543146 -156745516 + GA-rich Low_complexity Low_complexity 2 83 0 317 284 37 0 chr4 27543332 27543413 -156745249 + L2 LINE L2 3229 3312 -1 1231 304 64 53 chr4 27543815 27544545 -156744117 - L3 LINE CR1 -206 1371 634 26 0 0 0 chr4 27544622 27544648 -156744014 + AT_rich Low_complexity Low_complexity 1 26 0 423 307 14 7 chr4 27544965 27545105 -156743557 - L2 LINE L2 -4 3309 3169 220 347 11 0 chr4 27545106 27545201 -156743461 + (TATG)n Simple_repeat Simple_repeat 4 99 0 1692 290 135 7 chr4 27545214 27545820 -156742842 + L2 LINE L2 1148 1831 -1483 2277 111 40 3 chr4 27546104 27546455 -156742207 + THE1B LTR MaLR 1 364 0 1694 264 66 39 chr4 27546467 27547014 -156741648 - L1ME3 LINE L1 -208 5954 5361 2205 63 45 0 chr4 27547014 27547301 -156741361 - AluY SINE Alu -11 300 1 1694 264 66 39 chr4 27547301 27547750 -156740912 - L1ME3 LINE L1 -801 5361 4925 827 280 89 25 chr4 27547752 27548077 -156740585 + L2 LINE L2 2968 3313 0 49 43 0 0 chr4 27548214 27548284 -156740378 + AT_rich Low_complexity Low_complexity 1 70 0 295 312 92 9 chr4 27548330 27548439 -156740223 - L2 LINE L2 -1 3271 3154 327 290 138 22 chr4 27548845 27548983 -156739679 - MIR SINE MIR -96 166 13 308 358 24 8 chr4 27549016 27549139 -156739523 - L2 LINE L2 0 3272 3148 544 315 19 6 chr4 27549751 27549913 -156738749 + MIR SINE MIR 74 237 -25 578 121 0 10 chr4 27549960 27550059 -156738603 + (GGAA)n Simple_repeat Simple_repeat 3 100 0 216 277 15 0 chr4 27551144 27551209 -156737453 + (TATATG)n Simple_repeat Simple_repeat 6 71 0 1592 251 105 16 chr4 27551517 27552011 -156736651 - MLT1F LTR MaLR -2 540 3 250 335 160 19 chr4 27552168 27552374 -156736288 - MLT1L LTR MaLR -13 602 368 257 346 71 16 chr4 27552960 27553087 -156735575 + L2 LINE L2 3136 3269 -3 436 271 54 77 chr4 27553322 27553473 -156735189 + MIR SINE MIR 47 193 -69 2304 163 34 17 chr4 27553473 27553891 -156734771 - MSTA LTR MaLR 0 428 4 436 271 54 77 chr4 27553891 27553960 -156734702 + MIR SINE MIR 193 262 0 387 327 0 0 chr4 27554124 27554234 -156734428 + MIR SINE MIR 3 112 -150 1148 255 44 5 chr4 27554234 27554614 -156734048 - MLT1E LTR MaLR 0 593 105 230 308 225 0 chr4 27554751 27554871 -156733791 + MIR SINE MIR 109 255 -7 258 363 47 19 chr4 27555741 27555956 -156732706 + L1ME2 LINE L1 92 312 -6084 912 236 27 95 chr4 27556614 27556808 -156731854 + L1ME2 LINE L1 666 872 -5346 2258 107 0 19 chr4 27556808 27557117 -156731545 + AluSg SINE Alu 1 303 -7 912 236 27 95 chr4 27557117 27557478 -156731184 + L1ME2 LINE L1 872 1181 -5037 4927 277 69 47 chr4 27557506 27560780 -156727882 + L1ME2 LINE L1 1220 4721 -1494 1488 252 50 52 chr4 27560797 27561581 -156727081 + L1ME2 LINE L1 5099 5903 -330 311 275 84 78 chr4 27561590 27561732 -156726930 - MLT1E LTR MaLR -399 143 1 228 284 37 12 chr4 27562858 27562939 -156725723 - MIR SINE MIR -4 258 176 255 326 112 41 chr4 27563139 27563335 -156725327 + LTR33 LTR ERVL 304 513 -8 485 304 68 0 chr4 27563336 27563497 -156725165 - MIR SINE MIR -79 183 12 256 213 0 0 chr4 27563952 27563999 -156724663 + MIR SINE MIR 73 119 -143 192 323 156 0 chr4 27564007 27564103 -156724559 + L2 LINE L2 3203 3313 0 1708 188 119 12 chr4 27564112 27564533 -156724129 - L1MC3 LINE L1 -1 7784 7319 1848 143 176 20 chr4 27564573 27564964 -156723698 + LTR10A LTR ERV1 97 548 -61 472 202 153 0 chr4 27564980 27565104 -156723558 - L1MC3 LINE L1 -463 7322 7180 243 242 15 15 chr4 27565112 27565178 -156723484 - MLT1F1 LTR MaLR -466 101 36 1952 174 33 30 chr4 27565179 27565412 -156723250 - L1MC3 LINE L1 -688 7097 6861 210 37 0 0 chr4 27565412 27565439 -156723223 + (TG)n Simple_repeat Simple_repeat 2 28 0 1952 174 33 30 chr4 27565439 27565602 -156723060 - L1MC3 LINE L1 -924 6861 6700 749 226 137 66 chr4 27565740 27566121 -156722541 - MER113 DNA MER1_type? -113 408 1 1713 177 0 3 chr4 27566124 27566433 -156722229 + AluJb SINE Alu 1 308 0 21 36 0 0 chr4 27566863 27566891 -156721771 + AT_rich Low_complexity Low_complexity 1 28 0 382 287 102 57 chr4 27567394 27567723 -156720939 + MLT1G LTR MaLR 19 375 -180 871 326 51 6 chr4 27567893 27568209 -156720453 + MLT1I LTR MaLR 31 360 -49 208 374 79 22 chr4 27568299 27568526 -156720136 + L2 LINE L2 2841 3080 -192 677 339 36 0 chr4 27568608 27568832 -156719830 - MIR SINE MIR -30 232 1 251 311 92 17 chr4 27568879 27568998 -156719664 + L2 LINE L2 3168 3295 -18 228 67 0 0 chr4 27570433 27570463 -156718199 + (TG)n Simple_repeat Simple_repeat 1 30 0 200 378 49 7 chr4 27570506 27570649 -156718013 - MIR3 SINE MIR -41 167 19 1990 119 7 0 chr4 27571638 27571923 -156716739 - AluSx SINE Alu -25 287 1 2093 126 0 0 chr4 27573120 27573413 -156715249 - AluSx SINE Alu -19 293 1 313 372 82 10 chr4 27573631 27573827 -156714835 + L2 LINE L2 2561 2770 -544 276 272 11 0 chr4 27574831 27574923 -156713739 + (TA)n Simple_repeat Simple_repeat 1 93 0 326 275 132 0 chr4 27576382 27576473 -156712189 + L2 LINE L2 3160 3262 -10 998 363 81 15 chr4 27576605 27577629 -156711033 - L2 LINE L2 -94 3219 2130 180 0 0 0 chr4 27578329 27578349 -156710313 + (TG)n Simple_repeat Simple_repeat 2 21 0 1533 112 5 0 chr4 27578507 27578713 -156709949 - AluSq SINE Alu -106 207 1 225 273 182 38 chr4 27578737 27578869 -156709793 - L2 LINE L2 0 3313 3163 23 33 0 0 chr4 27578869 27578899 -156709763 + AT_rich Low_complexity Low_complexity 1 30 0 32 26 0 0 chr4 27579203 27579242 -156709420 + AT_rich Low_complexity Low_complexity 1 39 0 338 248 32 70 chr4 27579242 27579399 -156709263 + MLT1I LTR MaLR 377 527 -22 215 312 142 14 chr4 27579568 27579709 -156708953 + L2 LINE L2 2996 3154 -159 336 64 0 0 chr4 27579728 27579775 -156708887 + (CA)n Simple_repeat Simple_repeat 2 48 0 300 115 0 0 chr4 27579799 27579851 -156708811 + MLT2C2 LTR ERVL 1 52 -412 2464 90 26 32 chr4 27580950 27581327 -156707335 - THE1C LTR MaLR 0 375 1 398 320 44 63 chr4 27581570 27581886 -156706776 + MLT1I LTR MaLR 68 377 -32 258 217 0 60 chr4 27582626 27582709 -156705953 - L1MC4 LINE L1 -1351 6691 6614 230 193 18 0 chr4 27582709 27582766 -156705896 + (TA)n Simple_repeat Simple_repeat 2 59 0 270 0 0 0 chr4 27583274 27583304 -156705358 + (CA)n Simple_repeat Simple_repeat 2 31 0 574 219 51 29 chr4 27584247 27584384 -156704278 + MIR SINE MIR 65 204 -58 235 241 35 0 chr4 27584417 27584475 -156704187 + L2 LINE L2 3001 3060 -212 198 240 40 0 chr4 27584657 27584707 -156703955 + L2 LINE L2 3248 3299 -14 213 39 0 0 chr4 27584710 27584736 -156703926 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 848 313 25 4 chr4 27584777 27585017 -156703645 - MIR SINE MIR -5 257 13 216 67 0 0 chr4 27585319 27585349 -156703313 + (CA)n Simple_repeat Simple_repeat 1 30 0 25 31 0 0 chr4 27585751 27585783 -156702879 + AT_rich Low_complexity Low_complexity 1 32 0 238 317 69 30 chr4 27585790 27585891 -156702771 - MIR SINE MIR -137 125 21 22 0 0 0 chr4 27586095 27586117 -156702545 + AT_rich Low_complexity Low_complexity 1 22 0 319 208 108 8 chr4 27586144 27586264 -156702398 - L1ME4a LINE L1 -33 6088 5957 371 317 81 5 chr4 27586592 27586778 -156701884 + MIR SINE MIR 21 220 -42 276 261 11 49 chr4 27586782 27586902 -156701760 - L1ME4a LINE L1 -517 5604 5491 209 290 0 32 chr4 27587404 27587466 -156701196 - L2 LINE L2 0 3272 3213 746 268 72 23 chr4 27587491 27587797 -156700865 + Charlie4a DNA MER1_type 21 341 -167 220 356 136 0 chr4 27589539 27589657 -156699005 + MIR3 SINE MIR 14 147 -61 203 88 29 0 chr4 27589766 27589800 -156698862 + (TATG)n Simple_repeat Simple_repeat 2 36 0 266 267 19 9 chr4 27589849 27589954 -156698708 + (TA)n Simple_repeat Simple_repeat 2 107 0 2321 69 0 10 chr4 27591007 27591310 -156697352 - AluY SINE Alu -11 300 1 404 336 49 0 chr4 27591355 27591498 -156697164 + L2 LINE L2 3163 3312 -1 301 288 25 25 chr4 27591745 27591863 -156696799 - L1MC/D LINE L1 -2148 5660 5543 22 88 0 0 chr4 27592025 27592082 -156696580 + AT_rich Low_complexity Low_complexity 1 57 0 404 297 15 49 chr4 27592129 27592395 -156696267 - L1MC/D LINE L1 -1300 4846 4590 1022 209 0 0 chr4 27592456 27592647 -156696015 - AluJb SINE Alu -1 311 121 2135 122 76 15 chr4 27593376 27593719 -156694943 + THE1B LTR MaLR 1 364 0 412 299 63 29 chr4 27594708 27594915 -156693747 - L2 LINE L2 -1 3312 3099 271 301 130 0 chr4 27595104 27595227 -156693435 - MIR SINE MIR -93 169 31 199 219 0 122 chr4 27597022 27597104 -156691558 - MIR SINE MIR -11 251 180 277 325 195 13 chr4 27597246 27597400 -156691262 + MIR3 SINE MIR 4 185 -23 1875 99 0 0 chr4 27598336 27598579 -156690083 + AluSc SINE Alu 4 246 -63 258 309 14 58 chr4 27600016 27600155 -156688507 + L2 LINE L2 3135 3267 -46 40 21 0 0 chr4 27600286 27600333 -156688329 + AT_rich Low_complexity Low_complexity 1 47 0 1073 194 5 0 chr4 27600333 27600539 -156688123 - L1PA16 LINE L1 -9 6157 5951 2192 119 0 0 chr4 27650539 27650834 -156637828 + AluSq SINE Alu 9 303 -10 195 365 21 10 chr4 27651087 27651183 -156637479 + MIR SINE MIR 32 128 -134 22 0 0 0 chr4 27651515 27651537 -156637125 + AT_rich Low_complexity Low_complexity 1 22 0 4961 122 42 6 chr4 27651894 27652695 -156635967 + L1PA13 LINE L1 5329 6161 -2 514 173 0 0 chr4 27653219 27653294 -156635368 - 5S rRNA rRNA -29 92 18 4197 110 13 41 chr4 27653294 27654326 -156634336 + L1PA7 LINE L1 5076 6072 -82 393 355 18 12 chr4 27654936 27655102 -156633560 - MIR SINE MIR -94 168 2 505 142 53 13 chr4 27655789 27655898 -156632764 - MLT1A2 LTR MaLR -254 111 1 23 33 0 0 chr4 27658558 27658588 -156630074 + AT_rich Low_complexity Low_complexity 1 30 0 2215 66 0 0 chr4 27659046 27659317 -156629345 - AluY SINE Alu -37 274 4 1323 98 0 0 chr4 27660573 27660792 -156627870 + AluY SINE Alu 127 311 0 424 236 50 18 chr4 27661409 27661605 -156627057 + THE1B LTR MaLR 150 348 -16 23 0 0 0 chr4 27662276 27662299 -156626363 + AT_rich Low_complexity Low_complexity 1 23 0 707 272 88 20 chr4 27662416 27663038 -156625624 - L1 LINE L1 -1177 4969 4297 22 0 0 0 chr4 27663267 27663289 -156625373 + AT_rich Low_complexity Low_complexity 1 22 0 1997 236 71 12 chr4 27664382 27665222 -156623440 + L1MCb LINE L1 649 1543 -4851 5552 101 6 28 chr4 27666201 27667634 -156621028 - L1PA7 LINE L1 -201 5953 4562 206 304 14 0 chr4 27669405 27669474 -156619188 + (CATATA)n Simple_repeat Simple_repeat 3 72 0 257 143 20 20 chr4 27670832 27670881 -156617781 - MLT2B1 LTR ERVL -471 49 1 8020 120 8 10 chr4 27670881 27672086 -156616576 - HERVL-B1 LTR ERVL 0 5654 4452 346 250 13 0 chr4 27672789 27672865 -156615797 - MLT1D LTR MaLR -428 77 1 2213 99 3 3 chr4 27672942 27673236 -156615426 + AluSx SINE Alu 1 294 -18 253 306 50 58 chr4 27674265 27674507 -156614155 + L2 LINE L2 2380 2619 -695 539 250 130 76 chr4 27674517 27674941 -156613721 - MLT1G3 LTR MaLR -26 523 75 647 330 64 29 chr4 27674993 27675338 -156613324 + L2 LINE L2 2617 2973 -341 566 189 14 81 chr4 27676070 27676218 -156612444 + MLT2A2 LTR ERVL 269 406 -47 715 303 149 20 chr4 27676334 27676776 -156611886 - LTR33 LTR ERVL -7 514 16 1693 149 64 10 chr4 27676918 27677213 -156611449 + AluSx SINE Alu 1 311 -1 1149 164 28 35 chr4 27678034 27678321 -156610341 - L1MA3 LINE L1 -30 6275 5991 864 156 0 7 chr4 27678311 27678465 -156610197 + L1MA3 LINE L1 5836 5988 -317 * 447 309 96 50 chr4 27678670 27679110 -156609552 - MER90 LTR ERV1 -38 576 78 936 209 105 14 chr4 27679693 27679903 -156608759 + MLT1D LTR MaLR 259 487 -18 180 179 0 0 chr4 27679941 27679980 -156608682 + (CA)n Simple_repeat Simple_repeat 2 40 0 245 329 132 20 chr4 27680871 27681023 -156607639 + MLT1J2 LTR MaLR 270 438 -12 1921 182 50 40 chr4 27681762 27682241 -156606421 + LTR2B LTR ERV1 7 490 0 2519 221 32 30 chr4 27682574 27682625 -156606037 + L1MCa LINE L1 922 971 -5455 2216 91 3 14 chr4 27682625 27682922 -156605740 + AluY SINE Alu 1 294 -17 2519 221 32 30 chr4 27682922 27683867 -156604795 + L1MCa LINE L1 971 2009 -4417 372 298 15 54 chr4 27684013 27684285 -156604377 - AluSg/x SINE Alu -29 271 90 3087 173 39 37 chr4 27685308 27686007 -156602655 + L1MC1 LINE L1 5634 6333 0 1552 167 15 4 chr4 27686103 27686373 -156602289 + MSTA LTR MaLR 4 276 -152 451 314 74 54 chr4 27686753 27686995 -156601667 - MIR SINE MIR -14 248 2 2133 231 58 82 chr4 27688311 27688646 -156600016 + L1MDa LINE L1 1721 2062 -4659 4910 95 24 7 chr4 27688646 27689362 -156599300 + L1PA8 LINE L1 5441 6168 -4 2133 231 58 82 chr4 27689362 27690114 -156598548 + L1MDa LINE L1 2062 2806 -3915 246 373 73 0 chr4 27690315 27690425 -156598237 - L2 LINE L2 0 3272 3155 1846 124 118 24 chr4 27690541 27690872 -156597790 - THE1B LTR MaLR -2 362 1 284 299 81 0 chr4 27691447 27691534 -156597128 + MIR SINE MIR 55 148 -60 10077 115 15 2 chr4 27691898 27693470 -156595192 - L1P LINE L1 -2676 3470 1878 5632 131 3 3 chr4 27693609 27694692 -156593970 - L1PA14 LINE L1 -11 6150 5069 299 127 0 18 chr4 27695332 27695387 -156593275 - MLT2A1 LTR ERVL -1 443 390 329 197 13 0 chr4 27695387 27695463 -156593199 + (TA)n Simple_repeat Simple_repeat 1 77 0 335 212 92 115 chr4 27696260 27696477 -156592185 - MIR SINE MIR -4 258 47 10809 107 9 32 chr4 27696500 27698248 -156590414 + L1P3 LINE L1 1 1708 -4753 417 290 83 7 chr4 27698674 27698819 -156589843 + MIR SINE MIR 97 252 -10 1834 129 7 11 chr4 27699065 27699371 -156589291 + AluSq SINE Alu 34 338 0 232 250 88 0 chr4 27699432 27699512 -156589150 + MLT1K LTR MaLR 371 457 -131 2162 243 54 89 chr4 27700148 27701879 -156586783 - L1MCa LINE L1 -2598 3828 2168 1887 138 42 0 chr4 27701879 27702168 -156586494 + AluSx SINE Alu 1 301 -11 2162 243 54 89 chr4 27702168 27702277 -156586385 - L1MCa LINE L1 -4258 2168 2057 250 348 57 28 chr4 27702762 27702903 -156585759 - MIR SINE MIR -111 151 7 26 30 0 0 chr4 27703097 27703130 -156585532 + AT_rich Low_complexity Low_complexity 1 33 0 236 345 198 0 chr4 27703356 27703472 -156585190 - L2 LINE L2 0 3272 3134 334 327 43 46 chr4 27703529 27703759 -156584903 - L2 LINE L2 -242 3030 2803 23 0 0 0 chr4 27705315 27705338 -156583324 + AT_rich Low_complexity Low_complexity 1 23 0 1440 106 4 21 chr4 27706109 27706345 -156582317 + L1PA10 LINE L1 5937 6168 0 207 0 0 0 chr4 27707202 27707225 -156581437 + (T)n Simple_repeat Simple_repeat 1 23 0 1824 136 41 7 chr4 27707257 27707552 -156581110 - AluSx SINE Alu -7 305 1 24 0 0 0 chr4 27708544 27708568 -156580094 + AT_rich Low_complexity Low_complexity 1 24 0 491 312 64 12 chr4 27709357 27709575 -156579087 + MIR SINE MIR 4 230 -32 206 303 15 15 chr4 27710702 27710768 -156577894 - L2 LINE L2 -38 3234 3169 2212 128 0 0 chr4 27710986 27711291 -156577371 - AluSx SINE Alu -7 305 1 285 241 51 13 chr4 27711422 27711501 -156577161 - L2 LINE L2 0 3313 3232 22 0 0 0 chr4 27712650 27712672 -156575990 + AT_rich Low_complexity Low_complexity 1 22 0 2078 133 0 0 chr4 27712672 27712965 -156575697 - AluJb SINE Alu -19 293 1 724 298 67 39 chr4 27713120 27713432 -156575230 - MLT1J1 LTR MaLR -100 346 26 2334 77 0 32 chr4 27714582 27714893 -156573769 - AluY SINE Alu -10 301 1 204 40 0 0 chr4 27715679 27715704 -156572958 + (GA)n Simple_repeat Simple_repeat 2 26 0 8672 162 38 10 chr4 27715987 27717525 -156571137 + Tigger1 DNA MER2_type 1 1581 -837 1673 213 5 11 chr4 27717538 27717905 -156570757 + L1PA16 LINE L1 5794 6158 -8 1006 128 94 15 chr4 27717915 27718118 -156570544 + L1P5 LINE L1 5571 5789 -367 260 284 0 0 chr4 27718120 27718208 -156570454 - L1MC4 LINE L1 -1340 6702 6615 300 233 0 0 chr4 27718209 27718282 -156570380 + (TA)n Simple_repeat Simple_repeat 2 74 0 1848 169 56 3 chr4 27718295 27718632 -156570030 + L1PB4 LINE L1 5789 6143 -13 3567 142 51 25 chr4 27718642 27719369 -156569293 + Tigger1 DNA MER2_type 1577 2418 0 276 333 83 14 chr4 27720185 27720329 -156568333 + MIR SINE MIR 30 183 -79 719 207 110 6 chr4 27720820 27720984 -156567678 + MSTC LTR MaLR 197 377 -51 369 220 11 11 chr4 27721115 27721206 -156567456 + MLT1K LTR MaLR 494 584 -4 24 0 0 0 chr4 27721287 27721311 -156567351 + AT_rich Low_complexity Low_complexity 1 24 0 496 331 54 19 chr4 27721538 27721909 -156566753 - L1ME LINE L1 -375 5795 5412 2099 100 23 0 chr4 27721975 27722275 -156566387 - AluSc SINE Alu 0 309 3 13606 151 78 33 chr4 27722489 27725091 -156563571 - Tigger2 DNA MER2_type 0 2718 1 455 391 46 24 chr4 27725119 27725709 -156562953 - L1MEd LINE L1 -5422 697 95 24 32 0 0 chr4 27727160 27727191 -156561471 + AT_rich Low_complexity Low_complexity 1 31 0 385 288 17 17 chr4 27727762 27727880 -156560782 + L2 LINE L2 3196 3313 0 1517 225 35 41 chr4 27728839 27729129 -156559533 - MLT1C LTR MaLR 0 467 180 2505 64 0 0 chr4 27729129 27729426 -156559236 - AluY SINE Alu -14 297 1 1517 225 35 41 chr4 27729426 27729597 -156559065 - MLT1C LTR MaLR -287 180 9 532 271 208 19 chr4 27729612 27729819 -156558843 - MIR SINE MIR -10 252 7 311 353 126 26 chr4 27730129 27730580 -156558082 + L2 LINE L2 2669 3167 -146 469 231 41 8 chr4 27731133 27731254 -156557408 + LTR33 LTR ERVL 397 521 0 1151 251 70 106 chr4 27731319 27731961 -156556701 - L2 LINE L2 -18 3295 2692 242 54 0 27 chr4 27731961 27731998 -156556664 + (TG)n Simple_repeat Simple_repeat 2 37 0 1151 251 70 106 chr4 27731998 27732188 -156556474 - L2 LINE L2 -621 2692 2497 1022 291 55 82 chr4 27732185 27732882 -156555780 - L2 LINE L2 0 3313 2640 * 266 224 26 95 chr4 27732960 27733076 -156555586 - L2 LINE L2 -885 2429 2322 200 281 34 67 chr4 27734546 27734635 -156554027 - L2 LINE L2 -6 3307 3222 484 199 8 8 chr4 27734645 27734776 -156553886 + GA-rich Low_complexity Low_complexity 2 132 0 1394 245 30 0 chr4 27735263 27735594 -156553068 - MLT1C LTR MaLR -124 343 3 1338 124 0 0 chr4 27735620 27735797 -156552865 + AluSq SINE Alu 1 177 -136 1117 137 0 16 chr4 27735917 27736099 -156552563 - AluSg/x SINE Alu -5 307 129 1950 252 62 96 chr4 27736220 27736510 -156552152 - L1MCb LINE L1 -5115 930 632 381 175 0 0 chr4 27736510 27736573 -156552089 + AluJ/FRAM SINE Alu 230 292 -10 1950 252 62 96 chr4 27736573 27737171 -156551491 - L1MCb LINE L1 -5413 632 12 415 277 36 0 chr4 27737200 27737337 -156551325 - L1MCa LINE L1 -4765 1661 1520 1123 261 75 21 chr4 27738658 27739078 -156549584 - MSTB2 LTR MaLR 0 457 1 4479 138 71 33 chr4 27739166 27740112 -156548550 + MER52C LTR ERV1 1 1277 -1 411 237 126 11 chr4 27740113 27740303 -156548359 + MER113 DNA MER1_type? 18 229 -292 283 132 113 0 chr4 27740377 27740430 -156548232 + MER113 DNA MER1_type? 348 406 -115 327 402 43 11 chr4 27741089 27741457 -156547205 - L3 LINE CR1 -275 1302 923 234 247 11 101 chr4 27741458 27741547 -156547115 - L3 LINE CR1 -609 968 888 34 0 0 0 chr4 27741551 27741585 -156547077 + AT_rich Low_complexity Low_complexity 1 34 0 677 321 47 0 chr4 27741620 27741832 -156546830 + MIR SINE MIR 41 262 0 837 98 0 0 chr4 27743175 27743318 -156545344 + (TA)n Simple_repeat Simple_repeat 2 144 0 209 287 11 10 chr4 27744303 27744501 -156544161 + (TA)n Simple_repeat Simple_repeat 1 198 0 224 242 30 0 chr4 27744427 27744493 -156544169 + (TATG)n Simple_repeat Simple_repeat 1 68 0 213 291 0 13 chr4 27745005 27745084 -156543578 - MIR SINE MIR -65 143 66 1927 107 73 3 chr4 27745086 27745375 -156543287 - AluSg SINE Alu 0 310 2 21 0 0 0 chr4 27745769 27745790 -156542872 + AT_rich Low_complexity Low_complexity 1 21 0 2241 112 3 0 chr4 27746898 27747202 -156541460 + AluSx SINE Alu 1 305 -7 230 289 170 15 chr4 27747223 27747358 -156541304 - L3 LINE CR1 -106 1471 1316 190 108 27 27 chr4 27747477 27747514 -156541148 - MIR SINE MIR -64 144 108 5621 109 19 1 chr4 27747645 27749035 -156539627 - L1PA13 LINE L1 -19 6144 4723 2911 210 25 30 chr4 27749040 27749802 -156538860 - L1PA13 LINE L1 -2210 3936 3179 * 5829 162 14 17 chr4 27749797 27751571 -156537091 - L1PB1 LINE L1 0 6151 4374 186 43 0 0 chr4 27751571 27751594 -156537068 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2006 133 0 0 chr4 27751595 27751874 -156536788 - AluSx SINE Alu -32 280 2 5829 162 14 17 chr4 27751874 27752224 -156536438 - L1PB1 LINE L1 -1776 4375 4033 1479 114 0 5 chr4 27752416 27752740 -156535922 - THE1C LTR MaLR 0 375 1 23 0 0 0 chr4 27754339 27754362 -156534300 + AT_rich Low_complexity Low_complexity 1 23 0 236 218 248 20 chr4 27754896 27754997 -156533665 + MER5C DNA MER1_type 1 124 -200 387 336 0 8 chr4 27755266 27755391 -156533271 + L2 LINE L2 3190 3313 0 1674 183 3 3 chr4 27755892 27756182 -156532480 - AluJb SINE Alu -22 290 1 252 0 0 0 chr4 27756193 27756221 -156532441 + (T)n Simple_repeat Simple_repeat 1 28 0 286 296 56 0 chr4 27756222 27756293 -156532369 - MIR SINE MIR -63 145 71 2212 146 24 11 chr4 27756347 27756717 -156531945 - THE1C LTR MaLR 0 375 1 213 132 0 0 chr4 27757015 27757053 -156531609 + (CAA)n Simple_repeat Simple_repeat 2 39 0 800 202 71 15 chr4 27757325 27757523 -156531139 - MER3 DNA MER1_type 0 209 1 380 298 25 8 chr4 27757600 27757721 -156530941 - MER94 DNA DNA -11 123 1 213 291 12 12 chr4 27757783 27757869 -156530793 + MIR SINE MIR 94 179 -83 193 385 31 31 chr4 27757915 27758011 -156530651 + L2 LINE L2 3160 3255 -17 370 274 97 80 chr4 27760218 27760444 -156528218 + MIR SINE MIR 33 262 0 30 27 0 0 chr4 27760444 27760481 -156528181 + AT_rich Low_complexity Low_complexity 1 37 0 245 296 85 76 chr4 27761679 27761902 -156526760 - MIR SINE MIR -11 251 27 236 331 114 25 chr4 27763140 27763319 -156525343 - MIR SINE MIR -76 186 3 597 296 76 17 chr4 27764208 27764544 -156524118 + MLT2E LTR ERVL 215 618 -10 234 0 0 0 chr4 27764639 27764665 -156523997 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 275 329 24 52 chr4 27766035 27766245 -156522417 - L2 LINE L2 -243 3070 2867 497 312 13 19 chr4 27767020 27767177 -156521485 + MLT1H LTR MaLR 199 354 -195 323 313 24 53 chr4 27767450 27767658 -156521004 + L2 LINE L2 2867 3068 -245 191 188 21 0 chr4 27767725 27767773 -156520889 + (TA)n Simple_repeat Simple_repeat 1 49 0 204 40 0 0 chr4 27767847 27767872 -156520790 + (TG)n Simple_repeat Simple_repeat 2 26 0 297 294 94 0 chr4 27767928 27768013 -156520649 - MIR3 SINE MIR -15 193 101 402 340 79 17 chr4 27768346 27768722 -156519940 + MLT1J2 LTR MaLR 67 450 0 499 372 108 17 chr4 27768731 27769027 -156519635 + L2 LINE L2 2945 3267 -5 189 0 0 0 chr4 27769724 27769745 -156518917 + (A)n Simple_repeat Simple_repeat 1 21 0 307 192 13 26 chr4 27769790 27769868 -156518794 - MER116 DNA Mariner 0 80 4 214 323 21 52 chr4 27770059 27770155 -156518507 + L2 LINE L2 3179 3271 -1 194 366 61 23 chr4 27770700 27770831 -156517831 + MIR SINE MIR 53 188 -74 363 264 179 0 chr4 27771346 27771452 -156517210 - L2 LINE L2 0 3272 3148 1209 96 0 0 chr4 27772000 27772182 -156516480 - AluY SINE Alu 0 309 128 792 187 3 114 chr4 27772308 27772640 -156516022 - AluY SINE Alu -16 295 1 857 351 138 12 chr4 27775190 27775697 -156512965 - L3 LINE CR1 -1 1576 1006 1417 268 95 24 chr4 27775792 27776468 -156512194 - L1ME3 LINE L1 -8 6154 5431 495 275 15 0 chr4 27776766 27776897 -156511765 - MER94 DNA DNA 0 134 2 2009 279 22 29 chr4 27777227 27777808 -156510854 - MLT1E LTR MaLR -16 577 1 497 75 21 32 chr4 27777973 27778067 -156510595 + (TTTTC)n Simple_repeat Simple_repeat 3 95 0 267 191 0 0 chr4 27778062 27778125 -156510537 + (TCTG)n Simple_repeat Simple_repeat 2 64 0 * 304 309 24 40 chr4 27778245 27778371 -156510291 + MIR SINE MIR 31 154 -108 332 391 6 19 chr4 27779181 27779342 -156509320 + MIR3 SINE MIR 43 201 -7 458 278 47 30 chr4 27780257 27780426 -156508236 - MIR3 SINE MIR -33 175 4 188 293 0 0 chr4 27781036 27781077 -156507585 + L3 LINE CR1 1516 1556 -21 23 33 0 0 chr4 27781796 27781826 -156506836 + AT_rich Low_complexity Low_complexity 1 30 0 346 309 75 48 chr4 27782055 27782495 -156506167 + L1ME4a LINE L1 5593 6044 -77 245 313 164 37 chr4 27784376 27784510 -156504152 - MIR3 SINE MIR -39 169 19 299 360 79 28 chr4 27785575 27785690 -156502972 - MIR SINE MIR -36 226 118 2698 102 0 0 chr4 27785690 27786053 -156502609 + THE1B LTR MaLR 2 364 0 299 360 79 28 chr4 27786053 27786151 -156502511 - MIR SINE MIR -144 118 2 957 201 0 0 chr4 27786504 27786698 -156501964 + AluJb SINE Alu 131 324 0 2011 130 0 7 chr4 27787046 27787345 -156501317 - AluSx SINE Alu -7 305 9 186 43 0 0 chr4 27787355 27787378 -156501284 + (T)n Simple_repeat Simple_repeat 1 23 0 581 242 106 19 chr4 27787378 27787539 -156501123 - FAM SINE Alu 0 175 1 256 356 7 48 chr4 27787974 27788120 -156500542 - MIR3 SINE MIR -64 144 5 386 250 0 0 chr4 27788181 27788269 -156500393 + MER94 DNA DNA 2 89 -45 480 293 102 43 chr4 27789596 27790041 -156498621 + MLT1H LTR MaLR 10 519 -30 1905 183 144 79 chr4 27790097 27790220 -156498442 + MLT1E1 LTR MaLR 10 124 -530 1866 137 3 26 chr4 27790220 27790526 -156498136 + AluSx SINE Alu 1 299 -13 1905 183 144 79 chr4 27790526 27791008 -156497654 + MLT1E1 LTR MaLR 124 654 0 235 304 173 21 chr4 27792327 27792518 -156496144 - MLT1J LTR MaLR -73 438 219 985 230 60 60 chr4 27792596 27792961 -156495701 + MLT1A1 LTR MaLR 1 365 0 249 320 52 0 chr4 27793079 27793176 -156495486 - L2 LINE L2 -3 3310 3209 364 283 0 0 chr4 27793270 27793369 -156495293 - MIR SINE MIR -18 244 146 1903 139 6 22 chr4 27793429 27793746 -156494916 - AluJb SINE Alu 0 312 1 547 243 110 17 chr4 27794157 27794330 -156494332 - MER5A DNA MER1_type 0 189 1 4423 209 69 5 chr4 27794407 27794725 -156493937 + Tigger6a DNA MER2_type 1 297 -1300 1472 235 19 22 chr4 27794725 27795091 -156493571 - MLT1A1 LTR MaLR 0 365 1 4423 209 69 5 chr4 27795091 27795790 -156492872 + Tigger6a DNA MER2_type 297 1083 0 2082 107 10 3 chr4 27795891 27796190 -156492472 - AluSc SINE Alu -8 301 1 2291 142 37 55 chr4 27796230 27796666 -156491996 - Tigger2a DNA MER2_type -6 428 1 1522 223 56 28 chr4 27796828 27797218 -156491444 - MLT1C LTR MaLR 0 467 67 181 219 123 0 chr4 27797281 27797354 -156491308 + MIR SINE MIR 105 186 -76 21 0 0 0 chr4 27797428 27797449 -156491213 + AT_rich Low_complexity Low_complexity 1 21 0 653 165 15 60 chr4 27798071 27798204 -156490458 + FLAM_A SINE Alu 1 127 -6 184 29 29 29 chr4 27798209 27798243 -156490419 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 2243 305 136 37 chr4 27798244 27799800 -156488862 + L1M4 LINE L1 2274 3983 -2163 5661 181 26 17 chr4 27799804 27801251 -156487411 - L1MA10 LINE L1 -1 6333 4869 434 278 9 0 chr4 27801276 27801391 -156487271 - MER44D DNA MER2_type -1 704 589 213 227 45 0 chr4 27801391 27801457 -156487205 + (TA)n Simple_repeat Simple_repeat 1 69 0 1413 246 36 38 chr4 27801457 27801929 -156486733 - MER44D DNA MER2_type -79 526 1 1550 213 35 8 chr4 27801929 27802329 -156486333 - L1MA10 LINE L1 -1316 4830 4420 374 214 21 91 chr4 27802330 27802517 -156486145 + L1 LINE L1 3456 3629 -2517 25 75 0 0 chr4 27803126 27803179 -156485483 + AT_rich Low_complexity Low_complexity 1 53 0 3016 209 65 44 chr4 27803293 27804344 -156484318 - L1MB8 LINE L1 -111 6067 5008 262 171 184 13 chr4 27804316 27804392 -156484270 + L1M4 LINE L1 3004 3092 -3054 * 1050 84 0 0 chr4 27804513 27804644 -156484018 - AluSg SINE Alu -179 131 1 344 289 139 50 chr4 27805263 27805443 -156483219 + L2 LINE L2 3118 3313 0 285 291 78 10 chr4 27806084 27806187 -156482475 - MIR3 SINE MIR -49 159 50 231 146 0 0 chr4 27807263 27807304 -156481358 + (TG)n Simple_repeat Simple_repeat 1 41 0 236 273 20 0 chr4 27808201 27808300 -156480362 + (TTATA)n Simple_repeat Simple_repeat 5 105 0 31 26 0 0 chr4 27809005 27809043 -156479619 + AT_rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr4 27809319 27809343 -156479319 + AT_rich Low_complexity Low_complexity 1 24 0 2328 8 0 0 chr4 27809582 27809847 -156478815 + L1PA2 LINE L1 5889 6153 -2 289 368 50 5 chr4 27810153 27810354 -156478308 + L2 LINE L2 516 725 -2589 232 318 119 40 chr4 27810535 27810686 -156477976 + MER5B DNA MER1_type 16 178 0 423 358 90 27 chr4 27810700 27811286 -156477376 + L2 LINE L2 976 1598 -1716 465 298 58 24 chr4 27811320 27811525 -156477137 + MIR SINE MIR 38 249 -13 929 362 26 22 chr4 27811592 27812128 -156476534 + L2 LINE L2 1720 2257 -1057 232 308 26 83 chr4 27812138 27812294 -156476368 + MIR SINE MIR 7 153 -109 236 349 102 18 chr4 27812384 27812550 -156476112 + L2 LINE L2 2239 2418 -896 21 0 0 0 chr4 27812637 27812658 -156476004 + AT_rich Low_complexity Low_complexity 1 21 0 52 17 0 0 chr4 27812716 27812775 -156475887 + AT_rich Low_complexity Low_complexity 1 59 0 635 333 37 9 chr4 27813028 27813596 -156475066 - L1MEd LINE L1 -3345 3037 2454 23 0 0 0 chr4 27813648 27813671 -156474991 + AT_rich Low_complexity Low_complexity 1 23 0 314 326 81 0 chr4 27813991 27814163 -156474499 - L1MEd LINE L1 -4649 1735 1550 26 30 0 0 chr4 27814213 27814246 -156474416 + AT_rich Low_complexity Low_complexity 1 33 0 291 351 51 20 chr4 27814346 27814569 -156474093 + MIR SINE MIR 18 253 -9 569 320 56 2 chr4 27814724 27815144 -156473518 - L1MEd LINE L1 -4862 1510 1159 211 294 0 0 chr4 27815637 27815705 -156472957 + (TA)n Simple_repeat Simple_repeat 2 69 0 320 386 62 45 chr4 27815751 27816173 -156472489 + L2 LINE L2 2549 2977 -337 357 366 34 75 chr4 27816233 27816501 -156472161 + L2 LINE L2 2997 3253 -19 195 100 0 0 chr4 27817564 27817594 -156471068 + (T)n Simple_repeat Simple_repeat 1 30 0 22 35 0 0 chr4 27817863 27817892 -156470770 + AT_rich Low_complexity Low_complexity 1 29 0 468 329 46 32 chr4 27819480 27819696 -156468966 + MIR SINE MIR 44 262 0 301 327 27 9 chr4 27819680 27819790 -156468872 - MIR SINE MIR -99 163 52 * 21 36 0 0 chr4 27819823 27819851 -156468811 + AT_rich Low_complexity Low_complexity 1 28 0 2591 80 24 104 chr4 27819865 27820315 -156468347 + L1PA11 LINE L1 5757 6170 -4 24 32 0 0 chr4 27820323 27820354 -156468308 + AT_rich Low_complexity Low_complexity 1 31 0 1593 282 109 60 chr4 27820380 27821060 -156467602 - HAL1 LINE L1 -130 2377 1732 2412 149 23 30 chr4 27821060 27821496 -156467166 + Tigger2a DNA MER2_type 2 434 0 1593 282 109 60 chr4 27821496 27821580 -156467082 - HAL1 LINE L1 -775 1732 1654 1655 111 0 4 chr4 27821580 27821806 -156466856 + AluSq SINE Alu 86 310 -3 1593 282 109 60 chr4 27821806 27822558 -156466104 - HAL1 LINE L1 -853 1654 786 256 244 191 23 chr4 27822959 27823090 -156465572 - HAL1 LINE L1 -2117 390 238 316 238 25 25 chr4 27823201 27823281 -156465381 + MLT1G1 LTR MaLR 1 80 -515 1061 274 128 30 chr4 27823338 27823805 -156464857 + MLT1G1 LTR MaLR 83 595 0 354 198 25 12 chr4 27823823 27823904 -156464758 + HsTC2 DNA Tc2 1807 1888 -10 302 273 149 39 chr4 27823940 27824094 -156464568 - HAL1 LINE L1 -2328 179 9 342 0 0 0 chr4 27824168 27824206 -156464456 + (TG)n Simple_repeat Simple_repeat 2 39 0 2015 88 49 14 chr4 27824917 27825201 -156463461 + AluY SINE Alu 18 311 0 279 289 0 35 chr4 27825312 27825426 -156463236 + LTR67 LTR ERVL 445 554 -3 375 182 0 0 chr4 27826494 27826571 -156462091 + CT-rich Low_complexity Low_complexity 2 78 0 361 288 54 81 chr4 27828347 27828630 -156460032 - MIR SINE MIR 0 262 2 322 331 31 15 chr4 27829464 27829594 -156459068 - MIR3 SINE MIR -16 192 61 1930 249 75 25 chr4 27829775 27830373 -156458289 + MER92B LTR ERV1 1 628 -8 454 322 25 25 chr4 27830467 27830669 -156457993 + MIR SINE MIR 49 250 -12 227 280 72 40 chr4 27830693 27830818 -156457844 - MIR SINE MIR -34 228 100 342 115 0 0 chr4 27831712 27831764 -156456898 + (TCCA)n Simple_repeat Simple_repeat 1 52 0 334 399 54 15 chr4 27832450 27832653 -156456009 + L2 LINE L2 3027 3237 -35 188 304 36 0 chr4 27832743 27832799 -156455863 + L2 LINE L2 2240 2297 -1017 222 344 43 43 chr4 27833108 27833201 -156455461 + L2 LINE L2 3106 3198 -74 268 302 123 0 chr4 27833404 27833510 -156455152 + MIR SINE MIR 138 256 -6 207 0 0 0 chr4 27834187 27834210 -156454452 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 279 306 22 15 chr4 27835276 27835410 -156453252 - MARNA DNA Mariner -305 281 147 519 272 69 16 chr4 27835460 27835706 -156452956 + MIR SINE MIR 3 261 -1 305 252 65 9 chr4 27835773 27835880 -156452782 - MIR SINE MIR -73 189 77 351 322 63 21 chr4 27837853 27837996 -156450666 - MIR3 SINE MIR -28 180 32 282 384 0 27 chr4 27838308 27838454 -156450208 + MER117 DNA MER1_type 4 145 -52 249 83 0 0 chr4 27838728 27838764 -156449898 + (TG)n Simple_repeat Simple_repeat 2 37 0 226 303 71 20 chr4 27839741 27839840 -156448822 - L2 LINE L2 -8 3305 3202 318 190 16 99 chr4 27840353 27840385 -156448277 - L1ME4a LINE L1 -43 6078 6045 978 198 90 100 chr4 27840385 27840785 -156447877 + MSTD LTR MaLR 1 396 0 318 190 16 99 chr4 27840785 27840873 -156447789 - L1ME4a LINE L1 -76 6045 5968 308 147 29 29 chr4 27841531 27841599 -156447063 - MIR SINE MIR -138 124 57 452 280 47 66 chr4 27841697 27841908 -156446754 + L2 LINE L2 3107 3313 0 7179 194 75 24 chr4 27841982 27844866 -156443796 + L1MC1 LINE L1 20 3149 -3277 5470 207 30 40 chr4 27844873 27847149 -156441513 + L1MC1 LINE L1 4341 6613 0 792 347 70 37 chr4 27848996 27849686 -156438976 - L2 LINE L2 -85 3228 2508 21 0 0 0 chr4 27849914 27849935 -156438727 + AT_rich Low_complexity Low_complexity 1 21 0 349 260 97 19 chr4 27849951 27850105 -156438557 + L1ME4a LINE L1 5835 6000 -121 21 36 0 0 chr4 27850113 27850141 -156438521 + AT_rich Low_complexity Low_complexity 1 28 0 386 298 35 40 chr4 27851419 27851648 -156437014 + MER115 DNA AcHobo 2 226 -467 598 283 50 66 chr4 27851948 27852146 -156436516 - MER63B DNA MER1_type 0 1062 16 446 183 135 0 chr4 27852160 27852264 -156436398 + MER115 DNA AcHobo 568 685 -8 553 204 96 113 chr4 27852548 27852788 -156435874 - Charlie1 DNA MER1_type -2523 238 3 368 326 9 17 chr4 27853492 27853649 -156435013 - MER5A DNA MER1_type -22 156 12 1051 171 288 29 chr4 27853782 27854091 -156434571 + MLT1B LTR MaLR 2 390 0 215 245 19 0 chr4 27855353 27855406 -156433256 - MIR SINE MIR -108 154 101 298 242 30 0 chr4 27855512 27855578 -156433084 - MER81 DNA DNA 0 114 47 2208 100 10 0 chr4 27855698 27855987 -156432675 + AluSq SINE Alu 1 292 -21 552 262 55 14 chr4 27856348 27856493 -156432169 - MIR SINE MIR -110 152 2 2387 100 0 0 chr4 27856871 27857180 -156431482 + AluSc SINE Alu 1 309 0 287 281 11 22 chr4 27857232 27857321 -156431341 + L1M3de LINE L1 928 1015 -5638 1556 297 106 0 chr4 27857353 27857777 -156430885 + L1M3de LINE L1 935 1403 -5250 520 223 154 43 chr4 27857855 27858043 -156430619 - MLT1J LTR MaLR -203 308 100 395 203 0 0 chr4 27858815 27858889 -156429773 - MLT1B LTR MaLR 0 390 317 1021 166 34 0 chr4 27858889 27859064 -156429598 - MLT1B LTR MaLR -209 181 1 1982 132 7 13 chr4 27859179 27859482 -156429180 - AluY SINE Alu -8 303 3 806 276 134 16 chr4 27860172 27860538 -156428124 - MLT1I LTR MaLR 0 409 1 980 304 123 32 chr4 27860542 27861279 -156427383 - L2 LINE L2 0 3313 2500 221 323 16 0 chr4 27861603 27861665 -156426997 - L2 LINE L2 0 3272 3210 2413 68 0 0 chr4 27861792 27862120 -156426542 + AluY SINE Alu 1 328 0 617 277 68 10 chr4 27862167 27862373 -156426289 + MER58A DNA MER1_type 7 224 0 965 230 42 5 chr4 27863535 27863748 -156424914 + MER58A DNA MER1_type 1 221 -3 261 250 15 0 chr4 27864913 27864981 -156423681 + (TATATG)n Simple_repeat Simple_repeat 5 73 0 6777 186 70 33 chr4 27865142 27866827 -156421835 + MER52A LTR ERV1 1 1755 0 218 274 62 62 chr4 27868602 27868715 -156419947 + L2 LINE L2 2766 2878 -436 274 233 33 0 chr4 27868744 27868804 -156419858 + L2 LINE L2 3243 3304 -9 181 333 53 18 chr4 27868845 27868959 -156419703 + MIR SINE MIR 105 222 -40 376 378 60 16 chr4 27869079 27869328 -156419334 - MIR SINE MIR 0 262 3 259 104 15 45 chr4 27869464 27869531 -156419131 + (TTTTTG)n Simple_repeat Simple_repeat 4 68 0 253 221 189 21 chr4 27869761 27869856 -156418806 - MIR SINE MIR -89 173 63 1104 164 68 0 chr4 27872300 27872520 -156416142 + MER96B DNA MER1_type? 1 235 -182 439 325 98 0 chr4 27872848 27873011 -156415651 + MIR SINE MIR 51 229 -33 277 386 39 13 chr4 27873528 27873681 -156414981 - L2 LINE L2 -9 3263 3107 207 292 0 0 chr4 27875006 27875054 -156413608 - MER5A DNA MER1_type -86 103 56 662 203 35 7 chr4 27875892 27876035 -156412627 + MER69 DNA AcHobo 1 147 -2379 261 320 16 49 chr4 27876090 27876212 -156412450 + MIR SINE MIR 29 146 -62 182 133 0 44 chr4 27877080 27877096 -156411566 + (GAAA)n Simple_repeat Simple_repeat 3 18 -27 3952 23 0 0 chr4 27877096 27877527 -156411135 + SVA Other Other 955 1385 -1 182 133 0 44 chr4 27877527 27877555 -156411107 + (GAAA)n Simple_repeat Simple_repeat 18 45 0 407 306 155 9 chr4 27877556 27877775 -156410887 - MIR SINE MIR -1 261 11 35 0 0 0 chr4 27877808 27877843 -156410819 + AT_rich Low_complexity Low_complexity 1 35 0 2182 110 0 49 chr4 27877866 27878194 -156410468 + AluSx SINE Alu 1 312 0 279 403 35 7 chr4 27878824 27878968 -156409694 - L2 LINE L2 0 3272 3125 276 323 108 38 chr4 27879121 27879307 -156409355 + MIR SINE MIR 21 219 -43 529 225 33 8 chr4 27879835 27879955 -156408707 - LTR67 LTR ERVL 0 557 435 2235 120 0 0 chr4 27880221 27880529 -156408133 + AluSx SINE Alu 1 308 -4 402 271 135 8 chr4 27880929 27881062 -156407600 - MER5A DNA MER1_type 0 189 40 244 291 142 24 chr4 27881557 27881684 -156406978 + MIR3 SINE MIR 66 207 -1 2121 102 7 7 chr4 27883096 27883380 -156405282 + AluSx SINE Alu 1 284 -28 201 39 0 0 chr4 27883385 27883411 -156405251 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 792 270 116 36 chr4 27883590 27884299 -156404363 - L1ME3A LINE L1 -229 5941 5165 500 283 41 47 chr4 27884669 27885178 -156403484 - L1ME3A LINE L1 -2896 3250 2745 288 267 77 9 chr4 27885251 27885472 -156403190 - L1ME3A LINE L1 -3693 2453 2218 1690 181 0 26 chr4 27885481 27885791 -156402871 - AluJo SINE Alu -10 302 1 206 256 0 51 chr4 27885896 27886013 -156402649 + T-rich Low_complexity Low_complexity 1 111 0 233 355 37 32 chr4 27886435 27886624 -156402038 - HAL1 LINE L1 -947 1560 1371 345 340 44 22 chr4 27887406 27887677 -156400985 - L1ME4a LINE L1 -156 5965 5689 420 278 24 32 chr4 27888101 27888227 -156400435 - MIR SINE MIR -117 145 21 196 125 0 42 chr4 27890465 27890513 -156398149 + (GAAAA)n Simple_repeat Simple_repeat 3 48 0 583 293 81 16 chr4 27895574 27895894 -156392768 - L2 LINE L2 -259 3054 2720 483 330 127 60 chr4 27896045 27896612 -156392050 - L2 LINE L2 -337 2977 2373 255 304 36 0 chr4 27896858 27896970 -156391692 + (TATATG)n Simple_repeat Simple_repeat 3 118 0 181 393 92 30 chr4 27897049 27897377 -156391285 - L2 LINE L2 -842 2472 2125 21592 165 34 17 chr4 27898949 27900623 -156388039 - L1 LINE L1 -1346 6219 4574 2005 125 0 13 chr4 27900623 27900927 -156387735 - AluSc SINE Alu -9 300 1 21592 165 34 17 chr4 27900927 27903254 -156385408 - L1 LINE L1 -2991 4574 2070 510 46 0 0 chr4 27903254 27903319 -156385343 + (TC)n Simple_repeat Simple_repeat 2 66 0 21592 165 34 17 chr4 27903319 27905414 -156383248 - L1 LINE L1 -5495 2070 12 38 61 0 0 chr4 27905423 27905489 -156383173 + AT_rich Low_complexity Low_complexity 1 66 0 423 296 156 45 chr4 27905596 27906019 -156382643 - L1M4 LINE L1 -1112 5034 4565 1274 186 63 39 chr4 27906565 27906850 -156381812 + AluJo SINE Alu 1 292 -20 603 281 86 17 chr4 27907290 27907813 -156380849 - L1MEc LINE L1 -3284 2845 2287 21 0 0 0 chr4 27907992 27908013 -156380649 + AT_rich Low_complexity Low_complexity 1 21 0 12403 227 40 14 chr4 27908069 27908481 -156380181 - L1PA16 LINE L1 -1 7603 7203 2278 164 48 14 chr4 27908481 27908895 -156379767 + MSTA LTR MaLR 1 428 0 12403 227 40 14 chr4 27908895 27911069 -156377593 - L1PA16 LINE L1 -401 7203 5087 201 74 0 0 chr4 27911069 27911096 -156377566 + (TTG)n Simple_repeat Simple_repeat 3 29 0 12403 227 40 14 chr4 27911096 27913732 -156374930 - L1PA16 LINE L1 -2517 5087 2214 2698 97 11 3 chr4 27913881 27914253 -156374409 - THE1C LTR MaLR 0 375 1 614 273 99 51 chr4 27914694 27915523 -156373139 - L1MEc LINE L1 -4655 1655 787 24 32 0 0 chr4 27916032 27916063 -156372599 + AT_rich Low_complexity Low_complexity 1 31 0 925 191 122 39 chr4 27916296 27916629 -156372033 - MER113 DNA MER1_type? -74 447 87 381 200 0 0 chr4 27916629 27916709 -156371953 + MER116 DNA Mariner 1 80 0 197 360 98 49 chr4 27919075 27919239 -156369423 + MIR3 SINE MIR 10 181 -27 225 351 20 7 chr4 27919652 27919803 -156368859 - L1M4 LINE L1 -556 5628 5476 226 309 0 22 chr4 27920418 27920554 -156368108 - L1M4 LINE L1 -972 5387 5255 251 281 25 99 chr4 27920751 27920872 -156367790 - MLT1H LTR MaLR -6 543 432 490 313 98 34 chr4 27920903 27921168 -156367494 - MLT1H LTR MaLR -198 351 70 12935 37 0 0 chr4 27921219 27923536 -156365126 - L1PA4 LINE L1 -11 6144 3820 983 229 130 33 chr4 27923614 27923976 -156364686 + MLT2C1 LTR ERVL 1 397 0 31 92 0 0 chr4 27924078 27924165 -156364497 + AT_rich Low_complexity Low_complexity 1 87 0 881 236 76 18 chr4 27924308 27924638 -156364024 - L1MCa LINE L1 -4928 1636 1288 2988 246 59 45 chr4 27924649 27925652 -156363010 - L1MCa LINE L1 -4851 1194 178 444 19 0 0 chr4 27925688 27925741 -156362921 + (TG)n Simple_repeat Simple_repeat 1 53 0 279 0 0 0 chr4 27925892 27925905 -156362757 + (TG)n Simple_repeat Simple_repeat 1 44 0 279 0 0 0 chr4 27925905 27925936 -156362726 + (TG)n Simple_repeat Simple_repeat 2 32 0 378 405 56 36 chr4 27925977 27926229 -156362433 - L1MEc LINE L1 -5450 669 413 402 121 0 0 chr4 27926247 27926313 -156362349 + (TG)n Simple_repeat Simple_repeat 2 67 0 28 0 0 0 chr4 27926686 27926714 -156361948 + AT_rich Low_complexity Low_complexity 1 28 0 783 304 0 36 chr4 27926787 27927037 -156361625 + MIR SINE MIR 8 248 -14 262 311 56 0 chr4 27927558 27927648 -156361014 - L2 LINE L2 -46 3226 3132 230 416 26 0 chr4 27927708 27927821 -156360841 - L1MEd LINE L1 -5468 651 536 191 333 8 65 chr4 27927939 27928062 -156360600 - L2 LINE L2 -209 3063 2948 220 387 21 16 chr4 27928337 27928523 -156360139 - L2 LINE L2 -674 2640 2454 394 250 87 0 chr4 27929167 27929271 -156359391 - L2 LINE L2 -16 3256 3144 461 240 8 58 chr4 27929338 27929459 -156359203 + L2 LINE L2 3198 3312 -1 932 273 137 62 chr4 27929815 27930364 -156358298 + MLT1G LTR MaLR 6 590 0 402 149 11 21 chr4 27930459 27930553 -156358109 + T-rich Low_complexity Low_complexity 2 94 0 1503 176 66 84 chr4 27931013 27931451 -156357211 + MSTB1 LTR MaLR 1 430 -2 1831 151 21 7 chr4 27932565 27932866 -156355796 + AluSx SINE Alu 3 307 0 194 297 27 61 chr4 27933307 27933455 -156355207 + L2 LINE L2 192 334 -2980 777 338 106 36 chr4 27933460 27933884 -156354778 + L2 LINE L2 308 806 -2508 494 114 13 0 chr4 27933884 27933963 -156354699 + MADE1 DNA Mariner 1 80 0 777 338 106 36 chr4 27933963 27934266 -156354396 + L2 LINE L2 806 1086 -2228 310 189 18 0 chr4 27934285 27934353 -156354309 - MLT1A1 LTR MaLR 0 646 489 1440 214 137 28 chr4 27934356 27934803 -156353859 - MLT1E1 LTR MaLR -42 612 97 401 322 181 56 chr4 27934862 27935344 -156353318 + L2 LINE L2 1103 1644 -1670 225 180 0 0 chr4 27935383 27935433 -156353229 + L1MD3 LINE L1 7934 7983 -12 852 330 154 25 chr4 27935473 27936188 -156352474 + L2 LINE L2 1751 2557 -757 1253 257 56 10 chr4 27936336 27936673 -156351989 - MLT1A1 LTR MaLR -22 420 1 259 301 0 0 chr4 27936823 27936896 -156351766 + MER94 DNA DNA 62 134 0 341 335 23 34 chr4 27937077 27937253 -156351409 + L2 LINE L2 2174 2347 -967 239 306 54 0 chr4 27937242 27937353 -156351309 - MIR SINE MIR 0 262 146 * 1195 225 53 82 chr4 27937430 27937808 -156350854 - MLT2D LTR ERVL -41 373 7 416 323 39 23 chr4 27937826 27937956 -156350706 - MIR SINE MIR -120 142 11 1019 212 64 29 chr4 27938497 27938843 -156349819 + MSTD LTR MaLR 3 396 0 6915 223 21 49 chr4 27938843 27940628 -156348034 + MSTD-int LTR MaLR 1 1735 0 965 207 63 47 chr4 27940628 27940985 -156347677 + MSTD LTR MaLR 1 395 -1 181 382 15 0 chr4 27941030 27941098 -156347564 + L2 LINE L2 3245 3313 0 867 285 27 19 chr4 27942039 27942299 -156346363 + MIR SINE MIR 1 262 0 30 0 0 0 chr4 27942568 27942598 -156346064 + AT_rich Low_complexity Low_complexity 1 30 0 1301 163 0 0 chr4 27942997 27943206 -156345456 + MER2 DNA MER2_type 1 209 -136 29 28 0 0 chr4 27943228 27943264 -156345398 + AT_rich Low_complexity Low_complexity 1 36 0 228 333 0 12 chr4 27943461 27943542 -156345120 + MIR SINE MIR 26 105 -157 220 286 0 0 chr4 27943582 27943631 -156345031 + L2 LINE L2 3248 3296 -17 460 205 106 66 chr4 27943868 27944019 -156344643 - MLT1H1 LTR MaLR 0 595 439 687 321 31 63 chr4 27944116 27944499 -156344163 - MLT1H1 LTR MaLR -184 371 1 2359 102 0 0 chr4 27944556 27944859 -156343803 - AluSq SINE Alu -9 304 2 341 301 37 44 chr4 27944986 27945122 -156343540 + MIR SINE MIR 57 191 -71 441 326 32 83 chr4 27946268 27946703 -156341959 + L2 LINE L2 1902 2314 -1000 190 205 48 84 chr4 27946794 27946877 -156341785 + L2 LINE L2 2331 2410 -904 230 342 125 35 chr4 27947207 27947375 -156341287 + L2 LINE L2 2580 2731 -583 2465 114 17 3 chr4 27947375 27947734 -156340928 + THE1B LTR MaLR 1 364 0 230 342 125 35 chr4 27947734 27947884 -156340778 + L2 LINE L2 2731 2927 -387 209 367 64 9 chr4 27948025 27948134 -156340528 + L2 LINE L2 3158 3272 0 373 275 18 18 chr4 27949103 27949270 -156339392 + (CA)n Simple_repeat Simple_repeat 1 167 0 216 0 0 0 chr4 27949310 27949334 -156339328 + (CA)n Simple_repeat Simple_repeat 2 25 0 349 373 27 9 chr4 27949424 27949644 -156339018 + MIR SINE MIR 13 236 -26 221 343 14 0 chr4 27949765 27949838 -156338824 + L2 LINE L2 2445 2518 -796 260 280 224 9 chr4 27950110 27950217 -156338445 + L2 LINE L2 3142 3271 -1 6164 56 0 0 chr4 27951827 27952591 -156336071 - L1PA6 LINE L1 -2 6152 5389 202 130 0 65 chr4 27952737 27952783 -156335879 - L2 LINE L2 0 3313 3271 4316 264 86 19 chr4 27952806 27955591 -156333071 - L1ME1 LINE L1 -3 6232 3250 729 254 43 47 chr4 27955653 27955684 -156332978 - L1ME1 LINE L1 -4555 1841 1811 2107 81 3 0 chr4 27955684 27955969 -156332693 - L1PA10 LINE L1 -4 6164 5879 729 254 43 47 chr4 27955969 27956216 -156332446 - L1ME1 LINE L1 -4585 1811 1564 629 224 64 0 chr4 27956318 27956443 -156332219 - FLAM_C SINE Alu 0 133 1 1138 155 93 25 chr4 27956445 27956723 -156331939 - L1MC3 LINE L1 -7 7778 7482 319 279 15 73 chr4 27956765 27956969 -156331693 - L1ME1 LINE L1 -4910 1307 1116 2327 260 17 32 chr4 27957006 27957756 -156330906 - L1ME1 LINE L1 -5424 972 234 996 289 113 20 chr4 27957788 27958238 -156330424 + L2 LINE L2 2081 2572 -742 2453 194 49 16 chr4 27958485 27959057 -156329605 - L1MD3 LINE L1 -1 7994 7404 273 250 48 48 chr4 27959057 27959141 -156329521 - MLT1F1 LTR MaLR -442 125 42 784 206 25 0 chr4 27959146 27959350 -156329312 - L1MD3 LINE L1 -920 7075 6867 207 100 0 0 chr4 27961643 27961673 -156326989 + (A)n Simple_repeat Simple_repeat 1 30 0 190 318 0 16 chr4 27962771 27962834 -156325828 + L2 LINE L2 3207 3268 -4 192 354 15 15 chr4 27962860 27962925 -156325737 - L3b LINE CR1 -5 1578 1514 * 297 284 14 92 chr4 27962921 27963062 -156325600 - MIR3 SINE MIR -43 165 36 534 154 0 28 chr4 27964425 27964568 -156324094 + CT-rich Low_complexity Low_complexity 2 140 0 1942 125 86 49 chr4 27964856 27965264 -156323398 - L1MA7 LINE L1 -6 6285 5863 389 178 20 8 chr4 27965260 27965362 -156323300 + L1MA7 LINE L1 5746 5843 -340 * 3437 149 45 16 chr4 27965608 27966254 -156322408 + L1PB4 LINE L1 5491 6155 -1 28 0 0 0 chr4 27966384 27966412 -156322250 + AT_rich Low_complexity Low_complexity 1 28 0 889 192 0 0 chr4 27966567 27966734 -156321928 + L1MB2 LINE L1 5998 6164 -7 2165 114 21 0 chr4 27967280 27967570 -156321092 + AluSx SINE Alu 1 296 -16 491 85 12 37 chr4 27967996 27968078 -156320584 - MADE1 DNA Mariner 0 80 1 2083 186 96 4 chr4 27968078 27968568 -156320094 - L1MA8 LINE L1 -12 6279 5745 3016 88 55 2 chr4 27968568 27968599 -156320063 - MLT2A1 LTR ERVL 0 444 416 252 59 0 0 chr4 27968599 27968633 -156320029 + (TA)n Simple_repeat Simple_repeat 2 35 0 3016 88 55 2 chr4 27968633 27969023 -156319639 - MLT2A1 LTR ERVL -28 416 1 42945 82 11 9 chr4 27969023 27974664 -156313998 - HERVL-A1-A1 LTR ERVL 0 5654 1 3345 76 7 11 chr4 27974664 27975110 -156313552 - MLT2A1 LTR ERVL 0 444 1 5775 184 60 8 chr4 27975114 27976806 -156311856 - L1MA8 LINE L1 -546 5745 3956 1781 168 26 45 chr4 27977341 27977723 -156310939 - THE1C LTR MaLR 0 375 1 2018 89 41 0 chr4 27977962 27978233 -156310429 - AluSx SINE Alu 0 312 31 3636 229 58 53 chr4 27978260 27979524 -156309138 + L1MC4 LINE L1 6772 8041 -1 197 345 67 17 chr4 27979550 27979669 -156308993 - L2 LINE L2 -12 3260 3136 209 300 38 25 chr4 27979743 27979823 -156308839 + L2 LINE L2 2700 2780 -534 251 250 25 25 chr4 27979842 27979922 -156308740 + MER117 DNA MER1_type 12 91 -106 1821 206 85 2 chr4 27979987 27980410 -156308252 - MLT1C LTR MaLR -2 465 8 413 339 24 6 chr4 27980640 27980808 -156307854 + L2 LINE L2 3118 3288 -25 2273 135 35 65 chr4 27983428 27983859 -156304803 - MSTB1 LTR MaLR -12 420 3 2744 243 35 6 chr4 27984127 27984760 -156303902 + MER82 DNA MER2_type 2 652 -1 213 344 46 92 chr4 27985111 27985329 -156303333 - L2 LINE L2 -36 3236 3029 785 280 0 0 chr4 27985732 27985918 -156302744 + MER5A DNA MER1_type 4 189 0 445 282 154 6 chr4 27986262 27986418 -156302244 + MER5A DNA MER1_type 11 189 0 552 294 112 11 chr4 27986543 27986730 -156301932 - MIR SINE MIR -21 241 36 1905 158 57 14 chr4 27987247 27987596 -156301066 - THE1B LTR MaLR 0 364 1 822 276 22 4 chr4 27988721 27988946 -156299716 + L3b LINE CR1 1109 1337 -246 2108 139 0 19 chr4 27989052 27989369 -156299293 + AluSx SINE Alu 1 311 -1 234 0 0 0 chr4 27990764 27990790 -156297872 + (T)n Simple_repeat Simple_repeat 1 26 0 269 268 24 47 chr4 27991076 27991203 -156297459 + LTR67 LTR ERVL 432 555 -2 358 366 26 21 chr4 27991416 27991610 -156297052 + L3 LINE CR1 586 780 -797 3656 192 47 46 chr4 27991617 27992481 -156296181 - L1MB8 LINE L1 0 6178 5303 2398 74 0 7 chr4 27992481 27992779 -156295883 - AluY SINE Alu -15 296 1 3656 192 47 46 chr4 27992779 27993472 -156295190 - L1MB8 LINE L1 -875 5303 4613 21 0 0 0 chr4 27993842 27993863 -156294799 + AT_rich Low_complexity Low_complexity 1 21 0 364 317 77 40 chr4 27994610 27995868 -156292794 - L1M4 LINE L1 -953 5193 3889 1405 230 74 35 chr4 27995889 27996388 -156292274 + L1MA9 LINE L1 5766 6289 -23 370 307 14 0 chr4 27996592 27996732 -156291930 - L1M4 LINE L1 -2581 3565 3424 477 268 24 8 chr4 27996993 27997116 -156291546 - L2 LINE L2 0 3313 3189 22 35 0 0 chr4 27997330 27997359 -156291303 + AT_rich Low_complexity Low_complexity 1 29 0 250 297 214 6 chr4 27997579 27997761 -156290901 - HAL1 LINE L1 -784 1723 1504 24 0 0 0 chr4 27997790 27997814 -156290848 + AT_rich Low_complexity Low_complexity 1 24 0 346 348 57 54 chr4 27997894 27998210 -156290452 - L1MEd LINE L1 -4886 1233 917 270 256 33 8 chr4 27999330 27999451 -156289211 + (TTATA)n Simple_repeat Simple_repeat 1 124 0 24 0 0 0 chr4 28000966 28000990 -156287672 + AT_rich Low_complexity Low_complexity 1 24 0 190 382 11 22 chr4 28001247 28001336 -156287326 - MER5A DNA MER1_type -38 151 64 301 100 0 0 chr4 28001336 28001376 -156287286 + LTR7 LTR ERV1 1 40 -410 2177 157 45 23 chr4 28001396 28001836 -156286826 + LTR7 LTR ERV1 1 450 0 932 188 188 17 chr4 28002231 28002465 -156286197 + AluSg1 SINE Alu 3 276 -33 752 121 13 32 chr4 28002468 28002625 -156286037 + (GGAA)n Simple_repeat Simple_repeat 3 156 0 229 352 11 23 chr4 28002645 28002733 -156285929 + MER5B DNA MER1_type 17 103 -75 1361 179 17 96 chr4 28002733 28003099 -156285563 + MLT1A2 LTR MaLR 1 431 -36 367 184 112 0 chr4 28003302 28003400 -156285262 + MLT1B LTR MaLR 27 135 -255 805 215 0 29 chr4 28003716 28003888 -156284774 - MLT1A1 LTR MaLR -198 167 1 2393 151 39 10 chr4 28004158 28004574 -156284088 + MSTA LTR MaLR 1 428 0 21 0 0 0 chr4 28004827 28004848 -156283814 + AT_rich Low_complexity Low_complexity 1 21 0 398 355 79 18 chr4 28004921 28005149 -156283513 + MIR SINE MIR 20 261 -1 1171 196 96 29 chr4 28005366 28005678 -156282984 - MLT1A1 LTR MaLR -31 334 2 835 295 87 38 chr4 28006517 28007046 -156281616 - MLT1H1 LTR MaLR 0 555 1 21 0 0 0 chr4 28007164 28007185 -156281477 + AT_rich Low_complexity Low_complexity 1 21 0 258 32 0 0 chr4 28008228 28008259 -156280403 + (T)n Simple_repeat Simple_repeat 1 31 0 332 266 138 9 chr4 28008449 28008558 -156280104 + MLT1K LTR MaLR 395 517 -71 230 233 0 0 chr4 28008568 28008611 -156280051 + (CA)n Simple_repeat Simple_repeat 2 44 0 201 39 0 0 chr4 28008612 28008638 -156280024 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 468 254 52 94 chr4 28009064 28009351 -156279311 - MLT1I LTR MaLR -21 388 114 601 223 40 34 chr4 28009598 28009746 -156278916 - LTR48B LTR ERV1 0 644 496 301 278 35 0 chr4 28009757 28009872 -156278790 - LTR49-int LTR ERV1 -2300 3963 3845 404 238 26 90 chr4 28009948 28010137 -156278525 - LTR49-int LTR ERV1 -2686 3577 3401 418 250 88 63 chr4 28010158 28010442 -156278220 - LTR49-int LTR ERV1 -2960 1976 1686 21 57 0 0 chr4 28010530 28010565 -156278097 + AT_rich Low_complexity Low_complexity 1 35 0 4997 156 21 25 chr4 28010567 28010932 -156277730 - L1PB3 LINE L1 -7 6147 5782 243 0 0 0 chr4 28010932 28010959 -156277703 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 2133 88 22 0 chr4 28010959 28011233 -156277429 - AluSc SINE Alu -29 280 1 4997 156 21 25 chr4 28011233 28012096 -156276566 - L1PB3 LINE L1 -370 5784 4918 407 215 128 27 chr4 28012116 28012265 -156276397 - LTR57-int LTR ERVL -3919 1424 1261 * 602 226 0 98 chr4 28012220 28012455 -156276207 - LTR49-int LTR ERV1 -3202 3129 869 897 234 88 119 chr4 28012456 28013021 -156275641 - LTR49-int LTR ERV1 -4228 2103 1556 256 288 15 0 chr4 28013959 28014025 -156274637 - tRNA-Glu-GAG tRNA tRNA -2 73 7 296 288 61 58 chr4 28014043 28014370 -156274292 - LTR49-int LTR ERV1 -5138 1193 866 6925 232 116 43 chr4 28014377 28015710 -156272952 - L1MDa LINE L1 -2852 3688 2454 243 88 0 0 chr4 28015710 28015744 -156272918 + (TG)n Simple_repeat Simple_repeat 1 34 0 6925 232 116 43 chr4 28015744 28017832 -156270830 - L1MDa LINE L1 -4086 2454 18 452 331 11 27 chr4 28018231 28018415 -156270247 - MIR SINE MIR -70 192 12 223 267 0 0 chr4 28018837 28018882 -156269780 - L2 LINE L2 -18 3254 3210 2342 72 0 3 chr4 28019088 28019420 -156269242 - AluY SINE Alu 0 331 1 1598 121 0 0 chr4 28019425 28019673 -156268989 - L1MA2 LINE L1 0 6304 6057 4594 128 24 28 chr4 28020260 28020872 -156267790 - L1MA2 LINE L1 -232 6072 5471 2383 100 0 0 chr4 28020872 28021173 -156267489 + AluSc SINE Alu 2 302 -7 4594 128 24 28 chr4 28021173 28021772 -156266890 - L1MA2 LINE L1 -833 5471 4871 1263 246 3 0 chr4 28021772 28022085 -156266577 - L1 LINE L1 -3458 4107 3794 * 4545 182 42 0 chr4 28022083 28022896 -156265766 - L1 LINE L1 -5932 1633 787 241 349 46 9 chr4 28023115 28023224 -156265438 - L2 LINE L2 -3 3310 3198 288 293 66 34 chr4 28023347 28023513 -156265149 - L2 LINE L2 -189 3083 2911 288 339 58 5 chr4 28024339 28024563 -156264099 - L2 LINE L2 -1 3312 3077 595 336 138 15 chr4 28024577 28024643 -156264019 - L2 LINE L2 -164 3149 3093 587 281 151 52 chr4 28024643 28024854 -156263808 - MLT1H1 LTR MaLR 0 555 366 192 40 0 0 chr4 28024854 28024879 -156263783 + (TC)n Simple_repeat Simple_repeat 2 26 0 587 281 151 52 chr4 28024879 28025172 -156263490 - MLT1H1 LTR MaLR -189 366 1 595 336 138 15 chr4 28025172 28025636 -156263026 - L2 LINE L2 -220 3093 2555 279 337 0 6 chr4 28025639 28025843 -156262819 + (TA)n Simple_repeat Simple_repeat 1 202 0 1032 201 112 5 chr4 28025884 28026098 -156262564 + MER8 DNA MER2_type 3 239 0 192 289 165 16 chr4 28026196 28026317 -156262345 - L2 LINE L2 -782 2532 2394 545 333 29 24 chr4 28026501 28026747 -156261915 + MIR SINE MIR 6 252 -10 1756 186 3 22 chr4 28027688 28028006 -156260656 - AluJb SINE Alu 0 312 1 16301 166 71 11 chr4 28028357 28035510 -156253152 + L1PA14 LINE L1 5 7597 -2 572 317 95 18 chr4 28035804 28036088 -156252574 + L2 LINE L2 3008 3313 0 192 306 0 20 chr4 28036227 28036276 -156252386 + MIR SINE MIR 19 66 -196 195 313 37 75 chr4 28036414 28036548 -156252114 - MER5A DNA MER1_type -6 183 55 931 353 46 15 chr4 28036918 28037437 -156251225 - L2 LINE L2 -944 2370 1836 196 268 56 0 chr4 28037467 28037538 -156251124 + MIR SINE MIR 118 192 -70 264 382 49 0 chr4 28038106 28038250 -156250412 - MIR SINE MIR -76 186 36 21 36 0 0 chr4 28038424 28038452 -156250210 + AT_rich Low_complexity Low_complexity 1 28 0 1427 221 13 45 chr4 28038662 28039037 -156249625 - MLT1A1 LTR MaLR -2 363 1 821 213 128 27 chr4 28039314 28039572 -156249090 + L1MA10 LINE L1 6050 6333 -1 767 123 0 0 chr4 28040091 28040205 -156248457 + L1PA7 LINE L1 1 114 -6347 * 3652 99 11 0 chr4 28040204 28040748 -156247914 + L1PA7 LINE L1 4259 4808 -1653 6768 72 2 1 chr4 28040749 28042461 -156246201 + L1PA7 LINE L1 4744 6458 -11 2652 84 5 10 chr4 28043055 28043448 -156245214 - THE1B-int LTR MaLR -1188 392 2 1920 140 23 26 chr4 28043449 28043791 -156244871 - THE1B LTR MaLR 0 364 24 20809 25 0 1 chr4 28043893 28046720 -156241942 + L1P1 LINE L1 2789 5614 -541 22474 42 44 3 chr4 28046820 28049792 -156238870 - L1P LINE L1 -3052 3094 1 2856 161 18 4 chr4 28049791 28050281 -156238381 - L1PA15-16 LINE L1 -5297 1552 1056 * 3346 180 22 8 chr4 28050283 28050951 -156237711 - L1MC3 LINE L1 -989 6796 6119 399 295 91 50 chr4 28051496 28051879 -156236783 - L1MC5 LINE L1 -276 7685 7287 454 238 34 27 chr4 28052013 28052222 -156236440 - L1MC4 LINE L1 -737 7224 7049 378 327 112 48 chr4 28052640 28053139 -156235523 - L1MC4a LINE L1 -1180 6628 6098 390 262 215 3 chr4 28053204 28053502 -156235160 - L1MC4a LINE L1 -1778 6030 5670 269 144 0 99 chr4 28053597 28053708 -156234954 + (TTA)n Simple_repeat Simple_repeat 1 100 0 21 36 0 0 chr4 28054363 28054391 -156234271 + AT_rich Low_complexity Low_complexity 1 28 0 1297 111 0 0 chr4 28054742 28054913 -156233749 - AluSg/x SINE Alu -7 305 135 4082 223 26 42 chr4 28056650 28057680 -156230982 + L1PA12 LINE L1 862 1907 -5677 1715 125 19 106 chr4 28057680 28058001 -156230661 + AluSx SINE Alu 1 293 -19 4082 223 26 42 chr4 28058001 28058301 -156230361 + L1PA12 LINE L1 1907 2210 -5374 2154 127 3 3 chr4 28058301 28058609 -156230053 + AluSx SINE Alu 1 308 -4 4082 223 26 42 chr4 28058609 28059183 -156229479 + L1PA12 LINE L1 2210 3541 -4043 * 6856 230 26 7 chr4 28059174 28060712 -156227950 + L1P LINE L1 3762 5329 -817 403 159 0 0 chr4 28060712 28060781 -156227881 + AluS SINE Alu 1 69 -242 349 91 15 0 chr4 28061410 28061476 -156227186 - L1P LINE L1 -845 5329 5263 420 55 0 0 chr4 28061793 28061848 -156226814 + (CA)n Simple_repeat Simple_repeat 2 56 0 334 192 0 0 chr4 28065707 28065780 -156222882 + L1MB8 LINE L1 6094 6166 -12 207 0 0 0 chr4 28066525 28066548 -156222114 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2218 118 0 0 chr4 28067242 28067538 -156221124 - AluSg SINE Alu -10 300 5 312 70 0 0 chr4 28067687 28067730 -156220932 + (CA)n Simple_repeat Simple_repeat 2 44 0 213 231 0 0 chr4 28068463 28068515 -156220147 + (CATA)n Simple_repeat Simple_repeat 3 54 0 1097 259 85 5 chr4 28068540 28068964 -156219698 + L1M4c LINE L1 1275 1732 -4652 379 263 45 64 chr4 28068970 28069289 -156219373 + L1M4c LINE L1 1923 2203 -4181 26 30 0 0 chr4 28069318 28069351 -156219311 + AT_rich Low_complexity Low_complexity 1 33 0 1155 72 0 0 chr4 28069509 28069662 -156219000 - L1PA6 LINE L1 -6 6148 5996 21 36 0 0 chr4 28069851 28069879 -156218783 + AT_rich Low_complexity Low_complexity 1 28 0 2231 102 0 10 chr4 28070604 28070898 -156217764 - AluSg SINE Alu -19 291 1 1800 293 64 7 chr4 28071221 28071828 -156216834 - L2 LINE L2 -357 2957 2316 1695 230 39 23 chr4 28071864 28072303 -156216359 + MLT1C LTR MaLR 6 451 -16 189 0 0 0 chr4 28074057 28074078 -156214584 + (TA)n Simple_repeat Simple_repeat 2 22 0 * 261 0 0 0 chr4 28074077 28074106 -156214556 + (GA)n Simple_repeat Simple_repeat 2 30 0 251 221 0 13 chr4 28074130 28074207 -156214455 + (TATG)n Simple_repeat Simple_repeat 1 76 0 255 61 0 0 chr4 28074212 28074245 -156214417 + (CA)n Simple_repeat Simple_repeat 2 34 0 213 246 0 35 chr4 28074255 28074312 -156214350 + L2 LINE L2 3259 3313 0 413 250 128 20 chr4 28074472 28074620 -156214042 + MIR SINE MIR 75 238 -24 24 0 0 0 chr4 28074990 28075014 -156213648 + AT_rich Low_complexity Low_complexity 1 24 0 1091 77 0 0 chr4 28076400 28076530 -156212132 - AluSq/x SINE Alu -181 132 3 4539 159 21 4 chr4 28076532 28077357 -156211305 - L1MA4 LINE L1 -237 6063 5229 747 213 22 6 chr4 28077562 28077745 -156210917 - L1MC3 LINE L1 -7 7778 7593 2943 12 0 12 chr4 28077847 28078170 -156210492 + L1HS LINE L1 5815 6135 -20 203 0 37 0 chr4 28078170 28078197 -156210465 + (TAA)n Simple_repeat Simple_repeat 3 30 0 2943 12 0 12 chr4 28078197 28078217 -156210445 + L1HS LINE L1 6135 6154 -1 209 0 97 0 chr4 28078611 28078642 -156210020 + A-rich Low_complexity Low_complexity 3 36 0 12751 207 32 8 chr4 28078643 28081260 -156207402 + L1PA16 LINE L1 1535 4088 -2781 273 29 0 0 chr4 28081260 28081294 -156207368 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 12751 207 32 8 chr4 28081294 28083875 -156204787 + L1PA16 LINE L1 4088 6860 -9 27 0 0 0 chr4 28083875 28083902 -156204760 + AT_rich Low_complexity Low_complexity 1 27 0 335 242 0 116 chr4 28083909 28083972 -156204690 + L1MC3 LINE L1 6793 6862 -923 246 81 0 0 chr4 28083972 28084009 -156204653 + (CA)n Simple_repeat Simple_repeat 1 37 0 335 242 0 116 chr4 28084009 28084143 -156204519 + L1MC3 LINE L1 6862 6967 -818 * 1035 160 17 0 chr4 28084137 28084312 -156204350 + L1P4 LINE L1 5523 5700 -466 471 191 82 0 chr4 28084331 28084441 -156204221 + L1MC3 LINE L1 6980 7098 -687 294 231 15 0 chr4 28084442 28084507 -156204155 + MLT1F1 LTR MaLR 37 102 -465 1598 163 41 0 chr4 28084538 28084833 -156203829 + L1MC3 LINE L1 7230 7536 -249 308 298 24 0 chr4 28084833 28084917 -156203745 + L1MC4 LINE L1 6618 6703 -1339 271 330 132 48 chr4 28086092 28086319 -156202343 - L2 LINE L2 -2 3270 3025 206 328 86 11 chr4 28086729 28086915 -156201747 - L2 LINE L2 -924 2390 2191 1536 175 60 35 chr4 28086957 28087323 -156201339 + THE1C LTR MaLR 1 375 0 228 314 15 66 chr4 28087395 28087532 -156201130 - MER5B DNA MER1_type -20 158 29 335 221 29 29 chr4 28088074 28088178 -156200484 + L1ME4a LINE L1 5808 5911 -210 299 255 61 51 chr4 28088612 28088710 -156199952 + L2 LINE L2 3184 3282 -31 4758 213 15 18 chr4 28090547 28090810 -156197852 - L1 LINE L1 -1610 4536 4274 1542 169 26 55 chr4 28090810 28090971 -156197691 - MER44D DNA MER2_type -1883 608 444 2205 134 0 0 chr4 28090971 28091278 -156197384 + AluSx SINE Alu 1 307 -5 1542 169 26 55 chr4 28091278 28091464 -156197198 - MER44D DNA MER2_type -2047 444 1 4758 213 15 18 chr4 28091464 28092304 -156196358 - L1 LINE L1 -1872 4274 3436 2607 218 17 30 chr4 28092301 28092998 -156195664 + L1 LINE L1 4552 5239 -907 * 1863 195 19 3 chr4 28093103 28093462 -156195200 - L1MC3 LINE L1 -226 7977 7613 393 209 11 11 chr4 28093465 28093556 -156195106 - MLT1F1 LTR MaLR -442 125 35 417 218 89 0 chr4 28093556 28093680 -156194982 - L1MC3 LINE L1 -692 7511 7377 272 167 0 0 chr4 28093680 28093728 -156194934 - MLT2D LTR ERVL 0 414 367 180 0 0 0 chr4 28093753 28093773 -156194889 + (TG)n Simple_repeat Simple_repeat 2 21 0 1603 190 6 35 chr4 28093773 28094089 -156194573 - MLT2D LTR ERVL -40 374 68 614 186 46 131 chr4 28094089 28094326 -156194336 - L1MC3 LINE L1 -847 7356 7140 1349 75 0 0 chr4 28094330 28094504 -156194158 + AluY SINE Alu 137 310 -1 6909 234 55 65 chr4 28094504 28095294 -156193368 - L1MC3 LINE L1 -743 5821 5025 1706 182 39 0 chr4 28095294 28095407 -156193255 + AluJb SINE Alu 7 114 -198 180 0 0 0 chr4 28095407 28095427 -156193235 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1706 182 39 0 chr4 28095427 28095593 -156193069 + AluJb SINE Alu 114 297 -15 6909 234 55 65 chr4 28095593 28096365 -156192297 - L1MC3 LINE L1 -1539 5025 4247 2165 100 29 16 chr4 28096365 28096674 -156191988 - AluSq SINE Alu 0 313 1 6909 234 55 65 chr4 28096674 28097415 -156191247 - L1MC3 LINE L1 -2317 4247 3500 637 195 35 40 chr4 28097415 28097632 -156191030 - AluJb SINE Alu 0 339 124 6909 234 55 65 chr4 28097632 28099933 -156188729 - L1MC3 LINE L1 -3064 3500 2414 479 241 9 0 chr4 28099942 28100054 -156188608 + LTR48B LTR ERV1 530 642 -2 992 222 121 70 chr4 28100091 28100447 -156188215 - MLT1A2 LTR MaLR 0 374 1 1909 243 55 48 chr4 28100447 28101758 -156186904 - L1MC3 LINE L1 -4238 2327 570 1073 262 96 19 chr4 28101856 28102169 -156186493 - L1MC3 LINE L1 -5484 561 225 660 199 21 14 chr4 28102171 28102312 -156186350 + MLT1A1 LTR MaLR 1 142 -223 2382 214 27 32 chr4 28102317 28103020 -156185642 - LTR27 LTR ERV1 -2 634 3 11038 140 14 24 chr4 28103020 28105088 -156183574 - LTR27-int LTR ERV1 -1 6995 4908 2126 89 28 17 chr4 28105088 28105379 -156183283 + AluY SINE Alu 3 296 -15 11038 140 14 24 chr4 28105379 28105440 -156183222 - LTR27-int LTR ERV1 -2088 4908 2231 1214 193 41 0 chr4 28105440 28105658 -156183004 + MLT1A1 LTR MaLR 139 365 0 338 296 39 69 chr4 28105659 28105912 -156182750 - L1MC3 LINE L1 -5819 296 1 1576 211 3 0 chr4 28105928 28106212 -156182450 - AluJb SINE Alu -27 285 1 624 158 10 0 chr4 28106358 28106459 -156182203 - LTR29 LTR ERV1 0 622 521 2948 175 50 2 chr4 28106559 28107159 -156181503 + L1MB1 LINE L1 5536 6164 -4 214 265 0 0 chr4 28107429 28107478 -156181184 - MIR3 SINE MIR -26 182 134 361 295 58 33 chr4 28107646 28107851 -156180811 + MIR SINE MIR 4 212 -50 2425 122 3 0 chr4 28108888 28109256 -156179406 - L1PB1 LINE L1 -1 6150 5782 509 163 0 30 chr4 28109256 28109391 -156179271 + (TA)n Simple_repeat Simple_repeat 2 132 0 3634 85 23 8 chr4 28109395 28109926 -156178736 - L1PB1 LINE L1 -359 5792 5254 690 312 17 13 chr4 28109984 28110215 -156178447 + MIR SINE MIR 14 245 -17 186 222 0 0 chr4 28110186 28110222 -156178440 + L2 LINE L2 3262 3297 -16 * 333 204 169 28 chr4 28110277 28110419 -156178243 - MER103 DNA DNA -2 164 3 291 54 0 0 chr4 28111111 28111148 -156177514 + (TA)n Simple_repeat Simple_repeat 1 37 0 311 364 38 23 chr4 28111972 28112104 -156176558 + L2 LINE L2 3139 3272 0 202 317 0 0 chr4 28112428 28112488 -156176174 + L2 LINE L2 3242 3301 -12 42405 36 22 1 chr4 28112489 28118517 -156170145 - L1PA3 LINE L1 0 6155 1 536 151 12 0 chr4 28118611 28118697 -156169965 + MER20 DNA MER1_type 1 87 -132 3244 223 39 18 chr4 28119269 28120121 -156168541 - L1MA9 LINE L1 -30 6282 5413 231 371 14 14 chr4 28121301 28121441 -156167221 + L2 LINE L2 2602 2741 -573 659 207 20 7 chr4 28121618 28121768 -156166894 + MER96B DNA MER1_type? 1 152 -265 21 0 0 0 chr4 28121770 28121791 -156166871 + AT_rich Low_complexity Low_complexity 1 21 0 995 223 170 33 chr4 28122092 28122421 -156166241 + MLT1E1 LTR MaLR 1 284 -370 261 0 0 0 chr4 28122421 28122450 -156166212 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 995 223 170 33 chr4 28122450 28122639 -156166023 + MLT1E1 LTR MaLR 284 654 0 246 355 78 44 chr4 28122641 28122962 -156165700 + L2 LINE L2 2610 2941 -373 21 36 0 0 chr4 28123273 28123301 -156165361 + AT_rich Low_complexity Low_complexity 1 28 0 1482 154 35 4 chr4 28123626 28123886 -156164776 - Tigger3(Golem) DNA MER2_type -2760 269 2 414 0 0 0 chr4 28123890 28123936 -156164726 + (CA)n Simple_repeat Simple_repeat 2 47 0 1102 256 86 8 chr4 28123936 28124318 -156164344 - MLT2B1 LTR ERVL -100 420 9 643 298 97 70 chr4 28124833 28125447 -156163215 + HAL1b LINE L1 71 584 -833 574 281 130 18 chr4 28125451 28125782 -156162880 + HAL1b LINE L1 635 1002 -415 28 79 0 0 chr4 28126299 28126362 -156162300 + AT_rich Low_complexity Low_complexity 1 63 0 277 305 75 10 chr4 28126606 28126914 -156161748 - L1ME4a LINE L1 -178 5943 5616 597 243 24 44 chr4 28127217 28127423 -156161239 + Charlie2 DNA MER1_type 105 306 -2476 2605 230 65 8 chr4 28127439 28128385 -156160277 + Charlie2 DNA MER1_type 1857 2855 -7 2568 55 0 3 chr4 28128695 28129007 -156159655 - AluY SINE Alu 0 311 1 188 346 64 0 chr4 28129929 28130007 -156158655 - L2 LINE L2 -46 3226 3144 1943 163 0 0 chr4 28130270 28130559 -156158103 + AluSx SINE Alu 1 289 -23 1011 213 92 0 chr4 28130708 28130915 -156157747 + AluJb SINE Alu 72 297 -15 1106 311 53 40 chr4 28131037 28131620 -156157042 + L2 LINE L2 1997 2587 -727 1382 181 56 98 chr4 28131654 28132064 -156156598 + MSTD LTR MaLR 4 396 0 2428 215 13 65 chr4 28132064 28132752 -156155910 + MSTD-int LTR MaLR 2 653 -1082 1281 209 73 12 chr4 28132752 28133082 -156155580 - MER4D LTR ERV1 0 903 554 1182 201 67 4 chr4 28133112 28133380 -156155282 - MER49 LTR ERV1 -638 285 1 3165 233 121 45 chr4 28133380 28134385 -156154277 + MSTD-int LTR MaLR 650 1731 -4 373 220 10 20 chr4 28134390 28134490 -156154172 + MSTD LTR MaLR 2 100 -296 * 889 169 17 34 chr4 28134489 28134592 -156154070 + MSTD LTR MaLR 210 310 -86 2363 169 26 9 chr4 28134592 28135011 -156153651 + MSTB LTR MaLR 1 426 0 889 169 17 34 chr4 28135011 28135084 -156153578 + MSTD LTR MaLR 310 383 -13 582 341 84 39 chr4 28135097 28135753 -156152909 + L2 LINE L2 2633 3313 0 293 326 11 0 chr4 28136193 28136282 -156152380 + MIR SINE MIR 54 143 -65 485 300 131 75 chr4 28137147 28137627 -156151035 - L2 LINE L2 0 3313 2807 2823 123 37 0 chr4 28137689 28138120 -156150542 - MLT2A2 LTR ERVL 0 453 7 303 317 10 10 chr4 28138293 28138397 -156150265 - L1MEc LINE L1 -6231 165 62 2333 60 0 0 chr4 28138820 28139147 -156149515 - AluY SINE Alu 0 327 1 1705 194 64 6 chr4 28139663 28140008 -156148654 - MLT1A1 LTR MaLR 0 365 1 764 264 117 18 chr4 28140085 28140637 -156148025 + L1ME4a LINE L1 5326 5928 -193 356 256 15 68 chr4 28140647 28140780 -156147882 + L1MDa LINE L1 2437 2562 -3978 1703 217 32 78 chr4 28140995 28141608 -156147054 + MER63C DNA MER1_type 11 661 -400 739 173 0 8 chr4 28141608 28141735 -156146927 - FLAM_C SINE Alu -7 126 1 1703 217 32 78 chr4 28141735 28141995 -156146667 + MER63C DNA MER1_type 661 931 0 333 261 59 14 chr4 28142121 28142198 -156146464 - L1MEc LINE L1 -919 1868 1796 1608 253 56 16 chr4 28142198 28142684 -156145978 + MLT1D LTR MaLR 1 505 0 333 261 59 14 chr4 28142684 28142823 -156145839 - L1MEc LINE L1 -991 1796 1723 24 96 0 0 chr4 28142886 28142959 -156145703 + AT_rich Low_complexity Low_complexity 1 73 0 373 263 89 38 chr4 28142975 28143188 -156145474 - L1MEc LINE L1 -5021 1405 1182 230 322 7 0 chr4 28143197 28143346 -156145316 - L1MEc LINE L1 -5085 1344 1195 290 254 24 79 chr4 28143856 28143982 -156144680 - L1MEc LINE L1 -5948 468 350 37 93 0 0 chr4 28144669 28144776 -156143886 + AT_rich Low_complexity Low_complexity 1 107 0 244 261 42 59 chr4 28145201 28145320 -156143342 - L3b LINE CR1 -351 1232 1116 892 276 13 63 chr4 28146389 28146769 -156141893 - MLT1K LTR MaLR -18 570 210 401 339 49 22 chr4 28147220 28147403 -156141259 - MIR SINE MIR -40 222 35 383 359 61 9 chr4 28147645 28147876 -156140786 + MIR SINE MIR 9 251 -11 1437 203 32 41 chr4 28147886 28148201 -156140461 - AluJo SINE Alu 0 312 1 222 196 0 36 chr4 28148206 28148262 -156140400 + (TTA)n Simple_repeat Simple_repeat 1 54 0 198 290 89 61 chr4 28148439 28148592 -156140070 + MIR SINE MIR 6 161 -70 2539 138 29 12 chr4 28148817 28149236 -156139426 + MSTB LTR MaLR 1 426 0 1625 175 40 55 chr4 28149825 28150226 -156138436 - MLT2C1 LTR ERVL -2 395 1 217 0 61 0 chr4 28150352 28150385 -156138277 + (TTTTTA)n Simple_repeat Simple_repeat 2 36 0 390 241 35 0 chr4 28150503 28150590 -156138072 + MER58 DNA MER1_type 10 99 -242 232 200 0 0 chr4 28150612 28150662 -156138000 + L1MB4 LINE L1 6113 6162 -18 405 155 29 29 chr4 28150686 28150789 -156137873 + MER58 DNA MER1_type 2318 2420 0 1990 156 0 6 chr4 28150898 28151212 -156137450 - AluJb SINE Alu 0 312 1 1021 279 63 34 chr4 28151337 28151468 -156137194 + L2 LINE L2 2760 2886 -427 1967 132 0 0 chr4 28151468 28151748 -156136914 - AluSx SINE Alu -2 310 31 1021 279 63 34 chr4 28151748 28152133 -156136529 + L2 LINE L2 2886 3303 -10 316 266 0 57 chr4 28152239 28152363 -156136299 - L2 LINE L2 0 3313 3197 2233 115 0 0 chr4 28152481 28152776 -156135886 - AluSg1 SINE Alu -14 295 1 2090 62 0 141 chr4 28153148 28153502 -156135160 - AluY SINE Alu -7 304 1 1259 177 35 0 chr4 28153558 28153784 -156134878 + Charlie3 DNA MER1_type 1 234 -2476 1142 73 20 0 chr4 28154607 28154758 -156133904 - AluY SINE Alu -9 302 149 3591 52 0 2 chr4 28154760 28155207 -156133455 + LTR7 LTR ERV1 3 448 -2 16349 88 29 21 chr4 28155209 28158288 -156130374 + HERVH LTR ERV1 1 2995 -4718 938 113 7 0 chr4 28158267 28158417 -156130245 + HERVH LTR ERV1 3140 3290 -4423 * 3254 111 0 6 chr4 28158407 28158912 -156129750 + HERVH LTR ERV1 3492 3993 -3720 1477 113 18 4 chr4 28158914 28159143 -156129519 + HERVH LTR ERV1 4488 4719 -2994 1156 59 0 30 chr4 28159135 28159304 -156129358 + HERVH LTR ERV1 7550 7713 0 * 3601 51 0 2 chr4 28159304 28159753 -156128909 + LTR7 LTR ERV1 1 448 -2 1285 65 0 0 chr4 28159755 28159908 -156128754 - AluY SINE Alu -158 153 1 278 324 14 0 chr4 28159959 28160030 -156128632 - L2 LINE L2 -63 3209 3138 28 0 0 0 chr4 28160063 28160091 -156128571 + AT_rich Low_complexity Low_complexity 1 28 0 264 244 198 0 chr4 28160357 28160443 -156128219 - MIR SINE MIR 0 262 160 2394 100 0 0 chr4 28160888 28161199 -156127463 + AluY SINE Alu 1 311 0 416 289 74 20 chr4 28161330 28161479 -156127183 + MIR3 SINE MIR 38 194 -14 308 229 0 0 chr4 28161576 28161659 -156127003 + L1MA10 LINE L1 6241 6323 -11 1078 175 52 10 chr4 28161935 28162129 -156126533 - AluJo SINE Alu -26 286 85 222 239 0 28 chr4 28162490 28162561 -156126101 + A-rich Low_complexity Low_complexity 3 71 0 2149 86 4 4 chr4 28162606 28162912 -156125750 - AluSg SINE Alu 0 306 1 183 100 0 0 chr4 28163208 28163238 -156125424 + (A)n Simple_repeat Simple_repeat 1 30 0 269 234 48 97 chr4 28164021 28164086 -156124576 + MIR SINE MIR 68 126 -136 2511 62 0 3 chr4 28164086 28164393 -156124269 - AluY SINE Alu -4 307 2 269 234 48 97 chr4 28164393 28164451 -156124211 + MIR SINE MIR 126 185 -77 265 240 0 0 chr4 28166288 28166338 -156122324 + MIR3 SINE MIR 111 160 -48 184 263 0 0 chr4 28166557 28166595 -156122067 - MIR SINE MIR -115 147 110 189 100 60 0 chr4 28167317 28167367 -156121295 + (TA)n Simple_repeat Simple_repeat 2 54 0 251 54 27 0 chr4 28168052 28168089 -156120573 + (TTTTTG)n Simple_repeat Simple_repeat 4 41 0 2767 23 0 0 chr4 28168131 28168441 -156120221 + AluYb8 SINE Alu 1 310 -8 2740 57 6 0 chr4 28168929 28169278 -156119384 + L1PA7 LINE L1 5802 6152 -2 2264 117 0 10 chr4 28169507 28169816 -156118846 - AluSx SINE Alu -6 306 1 273 260 14 0 chr4 28169939 28170012 -156118650 + MER112 DNA MER1_type 1 74 -186 2335 293 70 34 chr4 28170159 28171189 -156117473 - HERV16 LTR ERVL -2056 2940 1851 2000 147 46 12 chr4 28171189 28171515 -156117147 - MER1B DNA MER1_type 0 337 1 2335 293 70 34 chr4 28171515 28171714 -156116948 - HERV16 LTR ERVL -3145 1851 1661 1317 331 33 7 chr4 28171747 28172287 -156116375 - HERV16 LTR ERVL -3462 1534 981 371 242 0 42 chr4 28172704 28172799 -156115863 + L2 LINE L2 3221 3311 -2 217 225 0 0 chr4 28172817 28172857 -156115805 + (TATG)n Simple_repeat Simple_repeat 3 42 0 23 68 0 0 chr4 28172872 28172916 -156115746 + AT_rich Low_complexity Low_complexity 1 44 0 422 238 14 77 chr4 28173087 28173230 -156115432 - AluJo SINE Alu -178 134 1 348 362 44 33 chr4 28173456 28173891 -156114771 - L1 LINE L1 -2340 3806 3374 189 0 0 0 chr4 28174214 28174235 -156114427 + (TTA)n Simple_repeat Simple_repeat 1 21 0 269 274 221 0 chr4 28175783 28175896 -156112766 + MIR3 SINE MIR 58 195 -13 310 337 40 19 chr4 28176989 28177164 -156111498 + MIR SINE MIR 13 186 -57 682 264 88 0 chr4 28177253 28177446 -156111216 - MIR SINE MIR -31 231 22 2488 128 8 11 chr4 28177694 28178070 -156110592 + THE1C LTR MaLR 1 375 0 9422 105 35 47 chr4 28178070 28179664 -156108998 + THE1C-int LTR MaLR 1 1574 -6 2226 128 35 14 chr4 28179670 28180037 -156108625 + THE1C LTR MaLR 1 375 0 979 182 125 34 chr4 28180869 28181166 -156107496 + MER33 DNA MER1_type 1 324 0 678 316 85 44 chr4 28181592 28182212 -156106450 - L2 LINE L2 -20 3293 2584 1027 178 14 29 chr4 28182316 28182524 -156106138 - AluJo SINE Alu -23 289 85 636 321 47 65 chr4 28182756 28183204 -156105458 - L1ME4a LINE L1 -261 5860 5421 235 209 105 0 chr4 28183219 28183305 -156105357 - L1P LINE L1 -724 5427 5333 226 294 109 40 chr4 28183989 28184174 -156104488 + MIR3 SINE MIR 3 206 -56 278 341 29 34 chr4 28184334 28184539 -156104123 - Charlie8 DNA MER1_type -2212 205 2 199 403 71 44 chr4 28186042 28186337 -156102325 - L2 LINE L2 -2 3270 2968 316 292 55 22 chr4 28186619 28186830 -156101832 + MLT1K LTR MaLR 74 278 -337 353 341 104 6 chr4 28187828 28187992 -156100670 + MIR SINE MIR 52 231 -31 581 319 108 0 chr4 28188558 28188790 -156099872 + MIR SINE MIR 4 260 -2 27 81 0 0 chr4 28188897 28188959 -156099703 + AT_rich Low_complexity Low_complexity 1 62 0 1628 199 23 0 chr4 28189010 28189311 -156099351 + AluJo SINE Alu 5 312 0 383 236 9 38 chr4 28189430 28189536 -156099126 - AluJo SINE Alu -117 185 83 216 0 0 0 chr4 28189630 28189654 -156099008 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 488 236 55 112 chr4 28189807 28190154 -156098508 - MLT1I LTR MaLR -2 407 81 567 307 90 8 chr4 28190201 28190445 -156098217 + L2 LINE L2 3050 3313 0 277 319 78 7 chr4 28190604 28190745 -156097917 - MIR SINE MIR -56 206 56 216 274 78 20 chr4 28191153 28191255 -156097407 + MIR SINE MIR 127 234 -28 251 244 12 12 chr4 28191644 28191730 -156096932 + LTR67 LTR ERVL 472 557 0 540 125 47 0 chr4 28191797 28191925 -156096737 + (TAGA)n Simple_repeat Simple_repeat 3 136 0 613 278 59 5 chr4 28191925 28192112 -156096550 - MIR SINE MIR 0 262 66 193 385 13 0 chr4 28192605 28192683 -156095979 - MIR SINE MIR -179 83 5 392 298 70 0 chr4 28194605 28194719 -156093943 + MIR SINE MIR 24 145 -63 2011 38 0 61 chr4 28197358 28197647 -156091015 - AluY SINE Alu 0 309 37 770 114 0 0 chr4 28197647 28197761 -156090901 + AluSg/x SINE Alu 189 302 -8 205 253 53 32 chr4 28197985 28198080 -156090582 + MIR SINE MIR 77 173 -89 1501 220 3 10 chr4 28198227 28198532 -156090130 + AluJo SINE Alu 1 303 -9 392 329 133 7 chr4 28198634 28198777 -156089885 + MIR3 SINE MIR 36 196 -12 283 345 164 36 chr4 28198800 28199656 -156089006 + L2 LINE L2 2027 2988 -284 484 333 91 9 chr4 28199681 28199900 -156088762 + MIR SINE MIR 14 250 -12 209 324 67 9 chr4 28199977 28200082 -156088580 + L2 LINE L2 3150 3260 -12 180 305 84 46 chr4 28200200 28200331 -156088331 + L2 LINE L2 3137 3272 0 417 341 93 22 chr4 28202020 28202246 -156086416 - MIR SINE MIR 0 262 21 273 293 27 0 chr4 28202839 28202914 -156085748 - L2 LINE L2 -15 3257 3181 1371 166 8 4 chr4 28202933 28203168 -156085494 - MER46A DNA MER2_type 0 236 1 534 209 38 0 chr4 28203791 28203896 -156084766 + MIR SINE MIR 49 157 -105 311 208 0 10 chr4 28204346 28204442 -156084220 + GA-rich Low_complexity Low_complexity 2 96 0 198 258 268 10 chr4 28206224 28206321 -156082341 - L2 LINE L2 -15 3257 3136 273 333 86 43 chr4 28206518 28206704 -156081958 + MIR SINE MIR 57 250 -12 27 49 0 0 chr4 28206710 28206751 -156081911 + AT_rich Low_complexity Low_complexity 1 41 0 230 0 33 0 chr4 28207989 28208019 -156080643 + (TGGA)n Simple_repeat Simple_repeat 3 33 0 2393 90 3 0 chr4 28208109 28208420 -156080242 + AluSp SINE Alu 1 312 -1 398 248 46 46 chr4 28208832 28208985 -156079677 + L2 LINE L2 3161 3313 0 285 208 62 42 chr4 28210281 28210377 -156078285 - MLT1L LTR MaLR -10 605 508 2313 100 0 16 chr4 28210972 28211282 -156077380 + AluSx SINE Alu 1 305 -7 2404 77 0 6 chr4 28212288 28212599 -156076063 + AluY SINE Alu 1 309 -2 22 0 0 0 chr4 28213131 28213153 -156075509 + AT_rich Low_complexity Low_complexity 1 22 0 347 230 32 79 chr4 28213220 28213346 -156075316 - MIR SINE MIR -20 242 123 1942 169 37 33 chr4 28213404 28213949 -156074713 - MLT2A2 LTR ERVL -2 552 1 11525 96 8 6 chr4 28213949 28215908 -156072754 - ERVL-A2 LTR ERVL -7 5757 3742 3708 97 19 2 chr4 28215911 28216437 -156072225 + THE1B-int LTR MaLR 1046 1580 0 2396 133 8 0 chr4 28216437 28216798 -156071864 + THE1B LTR MaLR 1 364 0 252 59 0 0 chr4 28216818 28216852 -156071810 + (TCCA)n Simple_repeat Simple_repeat 1 34 0 370 275 25 0 chr4 28216894 28216974 -156071688 - L2 LINE L2 -50 3222 3141 506 355 53 48 chr4 28217106 28217562 -156071100 - L2 LINE L2 -357 2957 2500 189 0 0 0 chr4 28217996 28218017 -156070645 + (T)n Simple_repeat Simple_repeat 1 21 0 225 283 151 9 chr4 28218656 28218762 -156069900 + L2 LINE L2 2590 2710 -604 485 410 102 17 chr4 28218810 28219212 -156069450 + L2 LINE L2 2827 3262 -10 259 336 44 35 chr4 28219302 28219415 -156069247 - L2 LINE L2 0 3272 3159 366 325 20 60 chr4 28219872 28220124 -156068538 - L2 LINE L2 -554 2760 2519 202 255 0 0 chr4 28220377 28220428 -156068234 + L2 LINE L2 3263 3313 0 471 314 138 53 chr4 28220690 28221508 -156067154 - L2 LINE L2 -1082 2232 1345 328 284 23 0 chr4 28221901 28221989 -156066673 - L1MC4 LINE L1 -1337 6705 6616 324 237 0 41 chr4 28221902 28221999 -156066663 + L1MC4 LINE L1 6613 6705 -1337 * 3086 234 47 34 chr4 28222234 28223144 -156065518 + L1ME1 LINE L1 5239 6159 -7 1994 157 0 0 chr4 28224049 28224354 -156064308 - AluSx SINE Alu -7 305 1 204 232 18 18 chr4 28224807 28224863 -156063799 + GA-rich Low_complexity Low_complexity 3 58 0 473 338 29 24 chr4 28225555 28225765 -156062897 - LTR33 LTR ERVL -310 211 1 398 340 103 47 chr4 28225993 28226440 -156062222 - ERVL LTR ERVL -400 5364 4893 1710 190 90 45 chr4 28226562 28227005 -156061657 - MLT1C LTR MaLR -4 463 1 180 0 0 0 chr4 28228431 28228451 -156060211 + (TG)n Simple_repeat Simple_repeat 2 21 0 * 219 36 0 0 chr4 28228450 28228478 -156060184 + (TA)n Simple_repeat Simple_repeat 1 28 0 1881 188 11 0 chr4 28229797 28230148 -156058514 - L1MB7 LINE L1 -20 6164 5810 415 326 14 0 chr4 28232080 28232221 -156056441 - MIR SINE MIR -4 258 116 1638 206 10 0 chr4 28232506 28232797 -156055865 + AluJo SINE Alu 1 294 -18 286 333 31 0 chr4 28232971 28233067 -156055595 - MIR SINE MIR -77 185 87 216 333 74 48 chr4 28233306 28233495 -156055167 - L2 LINE L2 -112 3160 2967 337 276 50 49 chr4 28234459 28234660 -156054002 + MIR SINE MIR 31 229 -33 236 319 0 0 chr4 28235345 28235417 -156053245 + L1ME LINE L1 5567 5638 -532 836 282 95 38 chr4 28235616 28235963 -156052699 + L2 LINE L2 2494 2860 -454 660 342 17 0 chr4 28236079 28236313 -156052349 + MIR SINE MIR 19 256 -6 407 374 21 11 chr4 28236387 28236574 -156052088 - L2 LINE L2 -238 3075 2887 269 233 158 17 chr4 28236631 28236751 -156051911 - MIR SINE MIR -16 246 110 * 626 304 239 28 chr4 28236698 28237264 -156051398 - L2 LINE L2 -380 2934 2250 298 301 83 0 chr4 28238110 28238243 -156050419 + MER103 DNA DNA 21 164 -2 544 267 133 0 chr4 28239160 28239340 -156049322 - MIR SINE MIR -12 250 47 366 308 46 8 chr4 28239504 28239634 -156049028 - L2 LINE L2 -1 3271 3137 30 0 0 0 chr4 28240698 28240728 -156047934 + AT_rich Low_complexity Low_complexity 1 30 0 2043 113 0 0 chr4 28240729 28240995 -156047667 - AluSc SINE Alu -43 266 1 22 0 0 0 chr4 28243188 28243210 -156045452 + AT_rich Low_complexity Low_complexity 1 22 0 1215 114 6 0 chr4 28243225 28243401 -156045261 - L1PA8A LINE L1 -7 6124 5948 199 0 65 0 chr4 28243606 28243637 -156045025 + (TTG)n Simple_repeat Simple_repeat 1 33 0 653 294 37 29 chr4 28245372 28245617 -156043045 - MIR SINE MIR -4 258 12 482 306 78 23 chr4 28245768 28245987 -156042675 + MIR SINE MIR 7 237 -25 203 351 26 0 chr4 28246885 28246962 -156041700 - MIR SINE MIR -16 246 168 216 309 53 32 chr4 28246996 28247090 -156041572 - MIR SINE MIR -94 114 19 205 288 96 0 chr4 28247461 28247534 -156041128 - MIR SINE MIR -3 259 180 427 208 233 0 chr4 28247895 28248015 -156040647 - AluJo SINE Alu -152 160 13 1710 174 49 30 chr4 28248016 28248384 -156040278 - THE1C LTR MaLR 0 375 1 833 338 68 21 chr4 28249079 28249398 -156039264 + L2 LINE L2 2776 3129 -184 2212 119 0 0 chr4 28249398 28249700 -156038962 - AluSg SINE Alu -8 302 1 833 338 68 21 chr4 28249700 28249895 -156038767 + L2 LINE L2 3129 3313 0 2181 147 28 6 chr4 28250778 28251132 -156037530 - THE1B LTR MaLR 0 364 3 1826 182 22 14 chr4 28251320 28251682 -156036980 + MLT1A1 LTR MaLR 1 365 0 233 343 155 17 chr4 28252101 28252282 -156036380 - MIR SINE MIR -37 225 20 327 225 0 0 chr4 28252646 28252717 -156035945 - L1ME LINE L1 -312 5809 5739 21 0 0 0 chr4 28252853 28252874 -156035788 + AT_rich Low_complexity Low_complexity 1 21 0 312 328 8 32 chr4 28252893 28253018 -156035644 + L2 LINE L2 3162 3283 -30 186 71 0 0 chr4 28253606 28253634 -156035028 + (A)n Simple_repeat Simple_repeat 1 28 0 2102 67 35 58 chr4 28253678 28253990 -156034672 - AluY SINE Alu -6 305 1 620 315 80 5 chr4 28253993 28254206 -156034456 - MIR SINE MIR -14 248 20 474 330 34 29 chr4 28254326 28254535 -156034127 - MIR SINE MIR -36 226 17 293 269 32 0 chr4 28254544 28254637 -156034025 + CT-rich Low_complexity Low_complexity 3 98 0 439 127 25 42 chr4 28254732 28254843 -156033819 + CT-rich Low_complexity Low_complexity 4 114 -5 1747 147 0 39 chr4 28254843 28255122 -156033540 - AluJb SINE Alu -44 268 1 201 174 22 0 chr4 28255274 28255320 -156033342 + (AAATG)n Simple_repeat Simple_repeat 3 49 0 269 348 169 0 chr4 28255978 28256096 -156032566 - L2 LINE L2 -1 3271 3134 27 49 0 0 chr4 28256551 28256592 -156032070 + AT_rich Low_complexity Low_complexity 1 41 0 448 254 60 43 chr4 28256595 28256827 -156031835 + L1M4 LINE L1 3754 3989 -2157 644 327 59 32 chr4 28256844 28257251 -156031411 - LTR16A LTR ERVL -20 430 13 275 279 0 0 chr4 28257368 28257454 -156031208 + L1M4 LINE L1 4151 4236 -1910 697 288 97 64 chr4 28257835 28258305 -156030357 + HAL1b LINE L1 328 836 -512 1831 158 0 4 chr4 28258305 28258583 -156030079 + AluJo SINE Alu 15 291 -21 697 288 97 64 chr4 28258583 28258883 -156029779 + HAL1b LINE L1 836 1124 -224 30 109 0 0 chr4 28259038 28259166 -156029496 + AT_rich Low_complexity Low_complexity 1 128 0 287 336 28 5 chr4 28259252 28259463 -156029199 + L1M4 LINE L1 4397 4612 -1534 223 167 45 0 chr4 28259520 28259586 -156029076 + (TA)n Simple_repeat Simple_repeat 1 69 0 183 100 0 0 chr4 28259864 28259894 -156028768 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 330 277 148 19 chr4 28260155 28260310 -156028352 + MER69A DNA AcHobo 3 177 0 502 229 54 42 chr4 28260437 28260603 -156028059 - MIR SINE MIR -3 259 92 240 218 56 106 chr4 28260858 28261000 -156027662 + HAL1b LINE L1 1199 1333 -15 300 292 95 54 chr4 28262151 28262319 -156026343 + MIR SINE MIR 2 176 -86 509 306 8 0 chr4 28262418 28262552 -156026110 - MIR SINE MIR -106 156 22 28 48 0 0 chr4 28262553 28262595 -156026067 + AT_rich Low_complexity Low_complexity 1 42 0 226 214 0 0 chr4 28262863 28262905 -156025757 + (TG)n Simple_repeat Simple_repeat 1 42 0 1900 217 76 24 chr4 28263569 28263988 -156024674 + MLT2B1 LTR ERVL 1 441 -79 1202 185 141 0 chr4 28264011 28264309 -156024353 + MER2 DNA MER2_type 2 341 -3 3176 242 35 98 chr4 28264320 28264415 -156024247 + MLT1A1-int LTR MaLR 5 104 -1631 2463 115 11 13 chr4 28264415 28264789 -156023873 - THE1C LTR MaLR 0 375 3 9414 134 30 58 chr4 28264791 28266417 -156022245 - THE1C-int LTR MaLR -1 1579 1 2599 111 11 0 chr4 28266417 28266788 -156021874 - THE1C LTR MaLR 0 375 1 3176 242 35 98 chr4 28266788 28268160 -156020502 + MLT1A1-int LTR MaLR 103 1735 0 1128 241 88 29 chr4 28268160 28268250 -156020412 + MLT1A1 LTR MaLR 4 87 -278 2136 142 37 3 chr4 28268250 28268602 -156020060 - THE1B LTR MaLR 0 364 1 1128 241 88 29 chr4 28268602 28268852 -156019810 + MLT1A1 LTR MaLR 87 364 -1 1194 320 61 7 chr4 28269018 28269477 -156019185 - MLT1J LTR MaLR -27 484 1 379 252 164 42 chr4 28269818 28270056 -156018606 + MLT1L LTR MaLR 22 288 -327 23 0 0 0 chr4 28271538 28271561 -156017101 + AT_rich Low_complexity Low_complexity 1 23 0 293 250 75 12 chr4 28271962 28272042 -156016620 - L2 LINE L2 -40 3232 3148 195 42 0 0 chr4 28272066 28272090 -156016572 + (CAA)n Simple_repeat Simple_repeat 1 24 0 344 237 53 18 chr4 28272412 28272526 -156016136 - MLT1J1 LTR MaLR -1 445 328 363 78 0 0 chr4 28272841 28272892 -156015770 + (TGGA)n Simple_repeat Simple_repeat 3 53 0 274 235 34 109 chr4 28274094 28274213 -156014449 - MIR SINE MIR -64 198 89 377 356 44 0 chr4 28274402 28274562 -156014100 - MIR SINE MIR -18 244 78 413 244 42 25 chr4 28275331 28275450 -156013212 + MIR SINE MIR 91 211 -51 454 346 139 13 chr4 28276268 28276641 -156012021 + L2 LINE L2 2557 2976 -338 221 245 0 0 chr4 28276765 28276814 -156011848 + (TTCA)n Simple_repeat Simple_repeat 3 51 0 208 314 116 41 chr4 28276821 28276942 -156011720 + L2 LINE L2 3137 3266 -6 * 279 302 146 14 chr4 28276937 28277149 -156011513 - MIR SINE MIR 0 262 23 283 287 149 33 chr4 28278854 28279035 -156009627 - MIR SINE MIR -6 256 55 192 163 0 0 chr4 28280135 28280178 -156008484 + (CA)n Simple_repeat Simple_repeat 2 44 0 1325 96 0 0 chr4 28281177 28281343 -156007319 - AluSx SINE Alu -121 191 26 307 319 43 17 chr4 28283034 28283150 -156005512 + L2 LINE L2 3187 3305 -8 207 327 187 19 chr4 28283158 28283265 -156005397 + L2 LINE L2 3139 3263 -9 2258 81 6 50 chr4 28283635 28283958 -156004704 - AluSc SINE Alu 0 309 1 7609 24 2 1 chr4 28286212 28287667 -156000995 + L1PA3 LINE L1 4709 6155 0 2099 111 10 7 chr4 28288464 28288752 -155999910 - AluSx SINE Alu -23 289 1 450 131 30 0 chr4 28289048 28289147 -155999515 + (TAGA)n Simple_repeat Simple_repeat 1 102 0 22 0 0 0 chr4 28289192 28289214 -155999448 + AT_rich Low_complexity Low_complexity 1 22 0 349 317 37 6 chr4 28289464 28289628 -155999034 + MIR SINE MIR 92 260 -2 243 0 0 0 chr4 28297383 28297410 -155991252 + (GA)n Simple_repeat Simple_repeat 2 28 0 234 0 0 0 chr4 28297572 28297598 -155991064 + (TTGG)n Simple_repeat Simple_repeat 1 26 0 243 0 0 0 chr4 28297621 28297648 -155991014 + (TA)n Simple_repeat Simple_repeat 2 28 0 302 115 19 0 chr4 28297802 28297854 -155990808 + (CA)n Simple_repeat Simple_repeat 1 53 0 294 69 52 0 chr4 28297966 28298024 -155990638 + (TTG)n Simple_repeat Simple_repeat 3 63 0 181 351 0 0 chr4 28298527 28298601 -155990061 - MIR SINE MIR -90 118 45 2518 87 122 5 chr4 28300166 28300567 -155988095 + LTR7 LTR ERV1 1 448 -2 330 213 13 13 chr4 28300650 28300725 -155987937 + L2 LINE L2 3235 3309 -4 487 271 192 9 chr4 28301646 28301860 -155986802 - MIR SINE MIR -4 258 6 25 31 0 0 chr4 28302557 28302589 -155986073 + AT_rich Low_complexity Low_complexity 1 32 0 316 275 134 33 chr4 28302706 28302913 -155985749 + L1ME4a LINE L1 5692 5877 -244 186 71 0 0 chr4 28302913 28302941 -155985721 + (TA)n Simple_repeat Simple_repeat 1 28 0 316 275 134 33 chr4 28302941 28303122 -155985540 + L1ME4a LINE L1 5877 6119 -2 582 226 15 22 chr4 28303133 28303270 -155985392 + MIR SINE MIR 114 249 -13 24 0 0 0 chr4 28303282 28303306 -155985356 + AT_rich Low_complexity Low_complexity 1 24 0 225 211 22 39 chr4 28303509 28303689 -155984973 + (CA)n Simple_repeat Simple_repeat 2 178 0 2384 95 0 0 chr4 28304716 28305021 -155983641 + AluSg1 SINE Alu 1 305 -4 446 335 38 32 chr4 28305447 28305632 -155983030 - MER5A DNA MER1_type -1 188 3 281 328 70 30 chr4 28305924 28306125 -155982537 + L3b LINE CR1 1216 1424 -159 185 381 0 0 chr4 28306235 28306298 -155982364 + L2 LINE L2 3244 3306 -7 1082 338 56 47 chr4 28306411 28307402 -155981260 + L2 LINE L2 2262 3260 -12 195 264 126 11 chr4 28309205 28309292 -155979370 - MIR SINE MIR -10 252 156 1258 147 62 23 chr4 28309881 28310055 -155978607 - L1MA10 LINE L1 -1 6333 6140 285 29 0 0 chr4 28310055 28310089 -155978573 + (TG)n Simple_repeat Simple_repeat 1 34 0 1258 147 62 23 chr4 28310089 28310221 -155978441 - L1MA10 LINE L1 -194 6140 6015 2251 63 0 0 chr4 28310321 28310589 -155978073 + AluY SINE Alu 33 300 -11 715 216 149 3 chr4 28311852 28312134 -155976528 - MER33 DNA MER1_type -1 323 1 184 262 204 0 chr4 28312271 28312374 -155976288 + L2 LINE L2 3126 3249 -64 394 318 0 0 chr4 28313767 28313893 -155974769 + MER117 DNA MER1_type 29 154 -43 2150 101 0 76 chr4 28314210 28314538 -155974124 - AluSx SINE Alu -9 303 1 25 31 0 0 chr4 28315906 28315938 -155972724 + AT_rich Low_complexity Low_complexity 1 32 0 216 214 0 0 chr4 28316908 28316950 -155971712 + A-rich Low_complexity Low_complexity 1 42 0 231 368 0 0 chr4 28319676 28319733 -155968929 - L2 LINE L2 -7 3265 3209 234 0 0 0 chr4 28321135 28321161 -155967501 + (T)n Simple_repeat Simple_repeat 1 26 0 334 314 57 6 chr4 28321971 28322130 -155966532 + L3b LINE CR1 1307 1473 -110 593 242 38 0 chr4 28323288 28323445 -155965217 - MER117 DNA MER1_type -29 168 6 497 288 91 26 chr4 28323940 28324158 -155964504 - MIR SINE MIR -3 259 30 339 176 40 0 chr4 28324257 28324331 -155964331 - MER116 DNA Mariner -2 78 2 22 35 0 0 chr4 28325589 28325618 -155963044 + AT_rich Low_complexity Low_complexity 1 29 0 201 352 0 9 chr4 28325931 28326036 -155962626 + (TA)n Simple_repeat Simple_repeat 1 104 0 189 121 0 0 chr4 28326514 28326547 -155962115 + (CA)n Simple_repeat Simple_repeat 2 34 0 201 262 16 0 chr4 28327595 28327656 -155961006 + (TATATG)n Simple_repeat Simple_repeat 5 66 0 343 315 102 0 chr4 28327726 28327853 -155960809 - MIR3 SINE MIR -7 201 62 200 200 0 0 chr4 28328691 28328726 -155959936 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 399 197 0 25 chr4 28330101 28330223 -155958439 + GA-rich Low_complexity Low_complexity 2 120 0 28 71 0 0 chr4 28331951 28332007 -155956655 + AT_rich Low_complexity Low_complexity 1 56 0 338 231 161 35 chr4 28333220 28333475 -155955187 + L1ME4a LINE L1 5582 5868 -253 221 375 23 16 chr4 28334379 28334507 -155954155 - L3 LINE CR1 -3 1574 1446 246 295 142 35 chr4 28334533 28334794 -155953868 + L2 LINE L2 2190 2478 -836 2535 67 0 3 chr4 28334891 28335203 -155953459 - AluY SINE Alu 0 311 1 375 319 83 7 chr4 28335301 28335445 -155953217 - L2 LINE L2 -2 3270 3116 1491 159 21 110 chr4 28336177 28336311 -155952351 + AluYb8 SINE Alu 2 146 -172 2288 86 0 3 chr4 28336311 28336601 -155952061 + AluY SINE Alu 1 289 -22 1491 159 21 110 chr4 28336601 28336793 -155951869 + AluYb8 SINE Alu 146 299 -19 387 0 0 0 chr4 28337759 28337802 -155950860 + (TG)n Simple_repeat Simple_repeat 2 44 0 195 151 151 19 chr4 28339613 28339666 -155948996 + MIR SINE MIR 81 140 -122 337 336 8 49 chr4 28341809 28341931 -155946731 + MIR3 SINE MIR 1 117 -91 2028 133 24 46 chr4 28341973 28342342 -155946320 - THE1B LTR MaLR -2 362 2 856 277 78 18 chr4 28342345 28342518 -155946144 + L2 LINE L2 2626 2787 -526 316 313 39 0 chr4 28342518 28342646 -155946016 + MER94 DNA DNA 2 134 0 856 277 78 18 chr4 28342646 28342940 -155945722 + L2 LINE L2 2787 3140 -173 334 392 104 15 chr4 28343362 28343622 -155945040 + L3 LINE CR1 156 438 -1139 22 70 0 0 chr4 28343754 28343797 -155944865 + AT_rich Low_complexity Low_complexity 1 43 0 24 32 0 0 chr4 28344156 28344187 -155944475 + AT_rich Low_complexity Low_complexity 1 31 0 445 196 23 113 chr4 28344818 28344874 -155943788 + MER5A DNA MER1_type 61 120 -69 1198 159 43 0 chr4 28344874 28345082 -155943580 - MER20 DNA MER1_type -2 217 1 445 196 23 113 chr4 28345082 28345158 -155943504 + MER5A DNA MER1_type 120 181 -8 584 290 202 0 chr4 28345638 28345831 -155942831 + MIR SINE MIR 6 237 -25 375 103 46 47 chr4 28346125 28346460 -155942202 + (TTATA)n Simple_repeat Simple_repeat 1 334 0 188 364 0 0 chr4 28347847 28347924 -155940738 - MIR3 SINE MIR -44 164 88 522 236 32 57 chr4 28348223 28348380 -155940282 - L2 LINE L2 -9 3304 3152 384 237 83 47 chr4 28348570 28348739 -155939923 + MER5B DNA MER1_type 2 176 -2 23 33 0 0 chr4 28349460 28349490 -155939172 + AT_rich Low_complexity Low_complexity 1 30 0 183 247 137 27 chr4 28349578 28349651 -155939011 + MIR SINE MIR 61 141 -67 278 348 43 7 chr4 28350369 28350463 -155938199 + MIR SINE MIR 50 152 -110 2316 51 0 4 chr4 28350463 28350738 -155937924 + AluY SINE Alu 19 292 -19 278 348 43 7 chr4 28350738 28350781 -155937881 + MIR SINE MIR 152 192 -70 249 278 42 14 chr4 28351412 28351484 -155937178 - L2 LINE L2 -43 3270 3197 217 254 0 0 chr4 28351552 28351607 -155937055 + A-rich Low_complexity Low_complexity 2 56 0 577 88 0 0 chr4 28351720 28351800 -155936862 + MADE1 DNA Mariner 1 80 0 456 334 46 23 chr4 28352236 28352449 -155936213 - MIR SINE MIR -15 247 32 459 286 161 6 chr4 28353450 28353611 -155935051 - MER5A DNA MER1_type 0 189 4 997 228 50 17 chr4 28355416 28355657 -155933005 + MIR SINE MIR 13 261 -1 276 383 83 0 chr4 28356283 28356403 -155932259 + L2 LINE L2 3141 3270 -2 2011 144 39 33 chr4 28356505 28356867 -155931795 + THE1B LTR MaLR 1 364 0 181 273 0 0 chr4 28356982 28357026 -155931636 + L2 LINE L2 3268 3311 -2 282 371 39 49 chr4 28357164 28357471 -155931191 - L2 LINE L2 -3 3269 2966 442 302 36 7 chr4 28358214 28358353 -155930309 - L2 LINE L2 -2 3311 3169 225 297 0 0 chr4 28360348 28360412 -155928250 - MIR SINE MIR -29 233 170 479 214 86 26 chr4 28360413 28360530 -155928132 + L2 LINE L2 3190 3313 0 322 241 256 15 chr4 28360527 28360664 -155927998 - MIR SINE MIR -86 176 7 * 184 318 16 16 chr4 28360709 28360772 -155927890 + MIR SINE MIR 86 148 -114 344 250 29 6 chr4 28361031 28361203 -155927459 + (TA)n Simple_repeat Simple_repeat 2 177 0 2145 92 0 17 chr4 28361664 28362009 -155926653 + AluY SINE Alu 8 311 0 1599 209 3 14 chr4 28362126 28362423 -155926239 + AluJo SINE Alu 5 298 -14 1217 172 79 7 chr4 28362424 28362714 -155925948 + L1MA9 LINE L1 5962 6272 -40 180 302 48 0 chr4 28363077 28363140 -155925522 - L2 LINE L2 -2092 1222 1157 210 167 0 0 chr4 28363722 28363758 -155924904 - L2 LINE L2 -17 3296 3261 377 253 82 48 chr4 28364607 28364753 -155923909 + MIR SINE MIR 42 192 -70 227 319 69 58 chr4 28365121 28365397 -155923265 + L2 LINE L2 2371 2649 -665 322 164 82 27 chr4 28365512 28365585 -155923077 + MIR3 SINE MIR 90 166 -42 284 289 124 8 chr4 28365677 28365798 -155922864 + L2 LINE L2 3136 3270 -2 1789 173 0 0 chr4 28365878 28366179 -155922483 - AluSx SINE Alu -11 301 1 2007 139 7 3 chr4 28367244 28367539 -155921123 + AluSx SINE Alu 1 296 -16 183 275 0 0 chr4 28367862 28367902 -155920760 + L2 LINE L2 3218 3257 -15 199 282 64 82 chr4 28367966 28368076 -155920586 + L2 LINE L2 3203 3310 -3 204 40 0 0 chr4 28368295 28368320 -155920342 + (CA)n Simple_repeat Simple_repeat 2 26 0 229 348 12 81 chr4 28369579 28369740 -155918922 + L2 LINE L2 3116 3265 -7 236 337 56 0 chr4 28374988 28375077 -155913585 + L2 LINE L2 3116 3209 -63 2417 66 3 25 chr4 28375256 28375573 -155913089 + AluY SINE Alu 1 310 -1 2331 71 0 61 chr4 28379577 28379903 -155908759 + AluY SINE Alu 1 306 -5 200 159 0 23 chr4 28382375 28382419 -155906243 + (CATA)n Simple_repeat Simple_repeat 4 46 0 228 263 0 0 chr4 28382446 28382503 -155906159 + (TA)n Simple_repeat Simple_repeat 2 58 0 294 309 0 36 chr4 28382725 28382835 -155905827 - L2 LINE L2 0 3313 3208 900 189 4 103 chr4 28384730 28384973 -155903689 - MER20 DNA MER1_type 0 219 1 523 298 26 26 chr4 28385810 28386001 -155902661 + MIR SINE MIR 18 208 -54 204 250 0 0 chr4 28386024 28386072 -155902590 + (TTA)n Simple_repeat Simple_repeat 2 49 0 189 256 0 0 chr4 28386080 28386119 -155902543 - L2 LINE L2 -8 3305 3267 180 204 0 45 chr4 28386225 28386269 -155902393 + L2 LINE L2 3266 3307 -6 24 0 0 0 chr4 28386611 28386635 -155902027 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr4 28386880 28386912 -155901750 + AT_rich Low_complexity Low_complexity 1 32 0 222 205 0 0 chr4 28387984 28388023 -155900639 + (TG)n Simple_repeat Simple_repeat 2 40 0 221 246 0 0 chr4 28389190 28389255 -155899407 + A-rich Low_complexity Low_complexity 1 65 0 237 178 0 0 chr4 28392551 28392596 -155896066 + A-rich Low_complexity Low_complexity 1 45 0 21 57 0 0 chr4 28395790 28395825 -155892837 + AT_rich Low_complexity Low_complexity 1 35 0 184 331 47 47 chr4 28396209 28396336 -155892326 - MIR SINE MIR -30 232 106 24 0 0 0 chr4 28396874 28396898 -155891764 + AT_rich Low_complexity Low_complexity 1 24 0 207 100 0 0 chr4 28397634 28397664 -155890998 + (T)n Simple_repeat Simple_repeat 1 30 0 767 264 95 49 chr4 28398002 28398258 -155890404 + L1ME4a LINE L1 5525 5768 -353 351 0 0 0 chr4 28398258 28398297 -155890365 + (TG)n Simple_repeat Simple_repeat 2 40 0 767 264 95 49 chr4 28398297 28398611 -155890051 + L1ME4a LINE L1 5768 6121 0 401 365 6 0 chr4 28399678 28399837 -155888825 + MIR3 SINE MIR 39 198 -10 2228 97 0 32 chr4 28401147 28401455 -155887207 - AluSg SINE Alu -12 298 1 819 264 27 46 chr4 28401888 28402256 -155886406 + L1ME3A LINE L1 5810 6170 0 253 298 24 12 chr4 28402431 28402515 -155886147 + MIR3 SINE MIR 83 167 -41 462 304 130 24 chr4 28402642 28402849 -155885813 + MIR SINE MIR 19 247 -15 2200 113 0 46 chr4 28403250 28403393 -155885269 + AluSx SINE Alu 1 149 -163 2525 56 0 10 chr4 28403393 28403696 -155884966 + AluY SINE Alu 1 300 -11 2200 113 0 46 chr4 28403696 28403879 -155884783 + AluSx SINE Alu 149 312 0 598 245 94 10 chr4 28404255 28404551 -155884111 + MER33 DNA MER1_type 1 361 -2 263 281 73 0 chr4 28404664 28404746 -155883916 + MER91C DNA MER1_type 32 119 -21 696 350 12 4 chr4 28407901 28408158 -155880504 - MIR SINE MIR 0 262 4 2004 134 23 0 chr4 28408636 28408935 -155879727 + AluSx SINE Alu 1 306 -6 286 319 72 14 chr4 28409816 28409954 -155878708 + MIR SINE MIR 47 192 -70 22 0 0 0 chr4 28410549 28410571 -155878091 + AT_rich Low_complexity Low_complexity 1 22 0 226 320 270 0 chr4 28411951 28412129 -155876533 + MIR SINE MIR 34 259 -3 589 97 67 0 chr4 28412402 28412567 -155876095 + (TA)n Simple_repeat Simple_repeat 2 177 0 22 0 0 0 chr4 28412583 28412605 -155876057 + AT_rich Low_complexity Low_complexity 1 22 0 395 67 97 0 chr4 28412608 28412735 -155875927 + (TA)n Simple_repeat Simple_repeat 2 144 -4 2026 120 7 0 chr4 28412735 28413018 -155875644 - AluSg SINE Alu -25 285 1 395 67 97 0 chr4 28413018 28413024 -155875638 + (TA)n Simple_repeat Simple_repeat 144 148 0 628 292 129 2 chr4 28413028 28413232 -155875430 - MIR SINE MIR -27 235 11 794 138 7 0 chr4 28414054 28414192 -155874470 - L1MB1 LINE L1 0 6168 6030 343 287 65 67 chr4 28414505 28414670 -155873992 + MIR SINE MIR 19 184 -63 1686 211 57 0 chr4 28414699 28415069 -155873593 + MLT2C2 LTR ERVL 3 393 -71 2364 60 0 54 chr4 28415069 28415385 -155873277 - AluY SINE Alu -12 299 1 319 21 42 0 chr4 28415505 28415553 -155873109 + (TA)n Simple_repeat Simple_repeat 1 50 0 294 29 0 0 chr4 28415552 28415587 -155873075 + (GA)n Simple_repeat Simple_repeat 2 36 0 * 245 65 0 0 chr4 28415590 28415621 -155873041 + MLT2C2 LTR ERVL 367 397 0 185 243 71 0 chr4 28415625 28415695 -155872967 - MIR SINE MIR -8 254 180 282 333 128 0 chr4 28415890 28415992 -155872670 + L2 LINE L2 3158 3272 0 204 377 54 72 chr4 28416127 28416350 -155872312 - L2 LINE L2 0 3272 3054 264 290 14 0 chr4 28416351 28416420 -155872242 - L2 LINE L2 0 3272 3203 22 0 0 0 chr4 28416426 28416448 -155872214 + AT_rich Low_complexity Low_complexity 1 22 0 260 189 27 40 chr4 28416459 28416533 -155872129 - MIR SINE MIR -14 248 176 25 51 0 0 chr4 28417411 28417450 -155871212 + AT_rich Low_complexity Low_complexity 1 39 0 521 275 64 39 chr4 28417691 28417924 -155870738 + L2 LINE L2 3046 3284 -29 857 231 49 39 chr4 28418196 28418399 -155870263 + MIR SINE MIR 2 206 -56 228 253 84 24 chr4 28418478 28418561 -155870101 + MIR SINE MIR 127 214 -48 548 242 38 97 chr4 28418604 28418997 -155869665 - L1ME4a LINE L1 -25 6096 5727 312 335 32 6 chr4 28419313 28419471 -155869191 - MER117 DNA MER1_type -29 168 7 189 107 0 0 chr4 28419633 28419661 -155869001 + (T)n Simple_repeat Simple_repeat 1 28 0 1749 65 5 0 chr4 28419674 28419891 -155868771 - AluY SINE Alu -93 218 1 270 297 0 0 chr4 28420384 28420448 -155868214 - L2 LINE L2 -1 3271 3208 1873 161 13 10 chr4 28420484 28420788 -155867874 - AluSx SINE Alu -7 305 1 212 242 81 61 chr4 28421395 28421494 -155867168 + L2 LINE L2 3195 3295 -18 263 322 6 12 chr4 28421594 28421735 -155866927 + MIR3 SINE MIR 62 202 -6 240 35 0 0 chr4 28424227 28424256 -155864406 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 206 81 0 54 chr4 28425373 28425410 -155863252 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 181 282 107 114 chr4 28425675 28425806 -155862856 - L2 LINE L2 0 3272 3143 206 214 0 0 chr4 28425817 28425859 -155862803 + GA-rich Low_complexity Low_complexity 3 44 0 2174 95 14 3 chr4 28426614 28426897 -155861765 + AluSc SINE Alu 1 286 -23 300 290 174 63 chr4 28428283 28428697 -155859965 + L2 LINE L2 2032 2491 -823 469 278 36 92 chr4 28428899 28429205 -155859457 + L2 LINE L2 2932 3220 -52 1989 131 60 20 chr4 28429253 28429605 -155859057 - MER47A DNA MER2_type 0 366 1 336 338 76 43 chr4 28429831 28430041 -155858621 - MIR SINE MIR 0 262 46 214 304 43 0 chr4 28430569 28430638 -155858024 + L2 LINE L2 3238 3309 -4 5062 88 4 41 chr4 28430639 28431420 -155857242 + L1PA10 LINE L1 5417 6168 0 21 36 0 0 chr4 28431420 28431448 -155857214 + AT_rich Low_complexity Low_complexity 1 28 0 346 222 111 40 chr4 28432084 28432210 -155856452 - MIR SINE MIR 0 262 128 442 273 103 30 chr4 28433898 28434063 -155854599 + MIR SINE MIR 71 247 -15 593 254 94 33 chr4 28434082 28434295 -155854367 + MIR SINE MIR 10 235 -27 286 301 122 16 chr4 28434620 28434743 -155853919 - MIR SINE MIR -107 155 20 21 0 0 0 chr4 28434868 28434889 -155853773 + AT_rich Low_complexity Low_complexity 1 21 0 340 265 0 68 chr4 28436987 28437104 -155851558 - MIR SINE MIR -93 169 61 273 300 57 0 chr4 28437782 28437852 -155850810 - MER91C DNA MER1_type -33 107 34 537 239 42 80 chr4 28437899 28438112 -155850550 - MIR SINE MIR -56 206 2 669 265 132 9 chr4 28438435 28438654 -155850008 - MIR SINE MIR -1 261 16 910 119 0 0 chr4 28438728 28438854 -155849808 + AluSp SINE Alu 7 132 -181 2023 119 14 0 chr4 28438857 28439150 -155849512 + AluSx SINE Alu 1 297 -15 413 18 54 0 chr4 28439761 28439817 -155848845 + (TAAAA)n Simple_repeat Simple_repeat 2 60 0 193 359 109 39 chr4 28440650 28440778 -155847884 - L2 LINE L2 0 3272 3136 202 188 0 0 chr4 28441383 28441415 -155847247 + polypurine Low_complexity Low_complexity 5 36 0 376 342 80 47 chr4 28442425 28442700 -155845962 - L2 LINE L2 -4 3268 2985 28 0 0 26 chr4 28443310 28443331 -155845331 + AT_rich Low_complexity Low_complexity 1 22 -16 1421 206 10 34 chr4 28443331 28443623 -155845039 - AluJo SINE Alu -25 287 3 28 0 0 26 chr4 28443623 28443640 -155845022 + AT_rich Low_complexity Low_complexity 22 38 0 279 271 25 8 chr4 28445681 28445799 -155842863 + L1MC/D LINE L1 5675 5794 -2014 276 329 0 0 chr4 28445812 28445888 -155842774 + MLT1F1 LTR MaLR 36 111 -456 3063 174 20 2 chr4 28445889 28446487 -155842175 + L1MC3 LINE L1 7177 7785 0 2563 105 5 29 chr4 28446772 28447154 -155841508 + THE1C LTR MaLR 1 373 -2 628 248 127 0 chr4 28447164 28447321 -155841341 + MIR SINE MIR 60 236 -26 225 108 0 0 chr4 28447324 28447361 -155841301 + (TCTCTG)n Simple_repeat Simple_repeat 5 41 0 21 0 0 0 chr4 28447445 28447466 -155841196 + AT_rich Low_complexity Low_complexity 1 21 0 23 78 0 0 chr4 28447496 28447547 -155841115 + AT_rich Low_complexity Low_complexity 1 51 0 291 54 0 0 chr4 28449024 28449061 -155839601 + (CA)n Simple_repeat Simple_repeat 2 38 0 789 305 4 61 chr4 28449435 28449565 -155839097 - MIR SINE MIR -2 260 151 405 0 0 0 chr4 28449565 28449610 -155839052 + (TA)n Simple_repeat Simple_repeat 2 46 0 789 305 4 61 chr4 28449610 28449741 -155838921 - MIR SINE MIR -111 151 14 363 286 143 0 chr4 28450358 28450477 -155838185 - L2 LINE L2 0 3272 3137 304 243 142 47 chr4 28450585 28450733 -155837929 - MIR SINE MIR -12 250 89 418 277 23 0 chr4 28450852 28450982 -155837680 - MER94 DNA DNA 0 134 2 340 292 215 42 chr4 28453246 28453530 -155835132 - L2 LINE L2 -5 3267 2935 243 323 48 38 chr4 28454469 28454655 -155834007 + LTR33 LTR ERVL 37 224 -297 551 206 33 46 chr4 28454792 28454967 -155833695 - MER69 DNA AcHobo 0 2526 8 180 0 0 0 chr4 28455290 28455310 -155833352 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 22 0 0 0 chr4 28456927 28456949 -155831713 + AT_rich Low_complexity Low_complexity 1 22 0 438 315 89 38 chr4 28457852 28458087 -155830575 - MIR SINE MIR 0 262 16 1293 229 76 0 chr4 28458088 28458403 -155830259 - MER58B DNA MER1_type -2 339 1 594 243 155 7 chr4 28458414 28458562 -155830100 - MER5A DNA MER1_type -3 186 17 489 279 104 22 chr4 28459084 28459267 -155829395 - MIR SINE MIR -62 200 3 310 336 167 15 chr4 28459301 28459625 -155829037 + L2 LINE L2 2895 3267 -5 187 261 22 0 chr4 28459672 28459718 -155828944 + MIR3 SINE MIR 108 154 -54 422 302 31 8 chr4 28459761 28459890 -155828772 - L2 LINE L2 0 3313 3182 899 161 9 85 chr4 28462408 28462619 -155826043 + MER20 DNA MER1_type 24 218 -1 291 296 45 0 chr4 28464513 28464601 -155824061 - MIR3 SINE MIR -34 174 83 585 228 139 19 chr4 28466346 28466504 -155822158 - MIR SINE MIR -66 196 20 461 302 131 37 chr4 28466593 28467050 -155821612 - L2 LINE L2 -819 2495 1996 258 314 48 38 chr4 28467505 28467610 -155821052 + L2 LINE L2 3208 3313 0 210 264 246 0 chr4 28467718 28467828 -155820834 + MIR SINE MIR 124 260 -2 1055 188 5 24 chr4 28468450 28468663 -155819999 + MER3 DNA MER1_type 1 209 0 290 283 66 33 chr4 28468779 28468931 -155819731 - MIR SINE MIR -75 187 31 228 271 17 0 chr4 28469879 28469938 -155818724 + CT-rich Low_complexity Low_complexity 2 61 0 217 339 100 66 chr4 28469939 28470228 -155818434 - L2 LINE L2 -65 3207 2909 407 250 167 21 chr4 28470349 28470493 -155818169 + MIR SINE MIR 86 250 -12 2022 122 11 0 chr4 28470824 28471102 -155817560 + AluSq SINE Alu 1 281 -32 278 0 54 0 chr4 28471103 28471140 -155817522 + (CAAAA)n Simple_repeat Simple_repeat 1 39 0 260 311 0 86 chr4 28471251 28471376 -155817286 - MIR SINE MIR -63 145 39 475 326 58 13 chr4 28471427 28471653 -155817009 - MIR SINE MIR -3 259 22 3273 85 2 11 chr4 28473571 28474019 -155814643 - MLT2A1 LTR ERVL 0 444 1 23 33 0 0 chr4 28474111 28474141 -155814521 + AT_rich Low_complexity Low_complexity 1 30 0 2064 147 0 3 chr4 28474562 28474875 -155813787 - AluSx SINE Alu 0 312 1 367 226 212 22 chr4 28475394 28475531 -155813131 - MIR SINE MIR -16 246 84 195 100 0 0 chr4 28475786 28475816 -155812846 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 512 250 8 8 chr4 28476579 28476711 -155811951 + L1MC4 LINE L1 7910 8041 -1 277 229 0 0 chr4 28476778 28476839 -155811823 + MER96 DNA MER1_type? 1 61 -114 433 233 308 0 chr4 28476839 28476911 -155811751 - MER96 DNA MER1_type 0 175 2 189 182 227 23 chr4 28477090 28477134 -155811528 - L2 LINE L2 -50 3222 3170 2354 154 0 8 chr4 28477773 28478150 -155810512 + L1PA16 LINE L1 5793 6166 0 211 280 176 48 chr4 28478376 28478501 -155810161 + MER5B DNA MER1_type 27 167 -11 938 184 5 65 chr4 28478511 28478633 -155810029 - MER5B DNA MER1_type -4 174 65 2388 88 17 0 chr4 28478633 28478929 -155809733 - AluSx SINE Alu -11 301 1 938 184 5 65 chr4 28478929 28478991 -155809671 - MER5B DNA MER1_type -113 65 1 2044 116 10 42 chr4 28479031 28479341 -155809321 + AluSq SINE Alu 1 300 -13 442 288 134 18 chr4 28481783 28482062 -155806600 + L2 LINE L2 2716 3025 -288 341 302 70 12 chr4 28482114 28482286 -155806376 - LTR16C LTR ERVL 0 491 310 391 328 40 75 chr4 28482512 28482765 -155805897 - L2 LINE L2 -96 3176 2933 725 299 38 46 chr4 28482859 28483237 -155805425 + L1ME3 LINE L1 5455 5829 -333 31 26 0 0 chr4 28483274 28483312 -155805350 + AT_rich Low_complexity Low_complexity 1 38 0 976 133 0 0 chr4 28483446 28483581 -155805081 + AluSq SINE Alu 35 169 -144 2470 54 0 3 chr4 28483741 28484036 -155804626 - AluY SINE Alu -2 309 16 409 227 57 0 chr4 28484232 28484337 -155804325 + MIR SINE MIR 61 170 -62 449 266 191 25 chr4 28485333 28485532 -155803130 + MIR SINE MIR 21 252 -10 209 409 0 11 chr4 28485602 28485690 -155802972 - L2 LINE L2 -18 3254 3168 284 235 24 24 chr4 28486215 28486300 -155802362 + GA-rich Low_complexity Low_complexity 5 89 0 259 204 87 48 chr4 28486597 28486700 -155801962 + MER113 DNA MER1_type? 10 116 -405 821 209 134 0 chr4 28486806 28486993 -155801669 + MIR SINE MIR 1 212 -50 282 314 88 24 chr4 28487289 28487420 -155801242 - MIR SINE MIR -45 163 25 186 195 39 0 chr4 28487585 28487662 -155801000 + (TTA)n Simple_repeat Simple_repeat 2 81 0 330 230 14 2 chr4 28487874 28487960 -155800702 + MER5A DNA MER1_type 36 131 -57 190 289 0 0 chr4 28488637 28488682 -155799980 + L2 LINE L2 3269 3313 0 5818 122 13 2 chr4 28490430 28491298 -155797364 + L1PA16 LINE L1 5254 6130 -36 616 307 91 13 chr4 28491644 28491875 -155796787 + MIR SINE MIR 14 262 0 225 247 57 95 chr4 28492304 28492462 -155796200 + L1ME LINE L1 5470 5621 -543 2277 117 0 0 chr4 28492597 28492896 -155795766 - AluSx SINE Alu -13 299 1 282 271 36 50 chr4 28492910 28493050 -155795612 + MER104 DNA Tc2 39 176 -4 1159 244 67 132 chr4 28493891 28494634 -155794028 - L2 LINE L2 -1 3312 2522 1674 65 0 0 chr4 28494634 28494833 -155793829 + AluY SINE Alu 1 199 -112 439 47 0 151 chr4 28494833 28494919 -155793743 + AluY SINE Alu 239 311 0 1159 244 67 132 chr4 28494919 28495183 -155793479 - L2 LINE L2 -789 2524 2301 350 206 53 175 chr4 28495999 28496188 -155792474 + MIR SINE MIR 41 206 -2 347 302 26 79 chr4 28496370 28496426 -155792236 + MIR SINE MIR 20 77 -185 2071 119 0 7 chr4 28496426 28496712 -155791950 - AluSx SINE Alu -7 305 22 347 302 26 79 chr4 28496712 28496844 -155791818 + MIR SINE MIR 77 198 -64 210 71 0 0 chr4 28496870 28496898 -155791764 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 473 232 0 0 chr4 28496923 28497022 -155791640 - LTR33A LTR ERVL -2 521 423 1929 144 3 41 chr4 28497189 28497509 -155791153 - AluSq SINE Alu -5 308 1 35 0 0 0 chr4 28497583 28497618 -155791044 + AT_rich Low_complexity Low_complexity 1 35 0 207 206 0 0 chr4 28498053 28498087 -155790575 + L2 LINE L2 3234 3267 -46 5508 35 2 14 chr4 28498824 28499512 -155789150 + L1PA4 LINE L1 5528 6155 0 193 295 63 32 chr4 28499545 28499640 -155789022 - L2 LINE L2 -35 3278 3181 268 269 56 56 chr4 28500959 28501067 -155787595 - MIR3 SINE MIR -18 190 83 1353 232 122 28 chr4 28501106 28501572 -155787090 + MLT1H LTR MaLR 18 527 -22 23 0 0 0 chr4 28501663 28501686 -155786976 + AT_rich Low_complexity Low_complexity 1 23 0 344 223 8 92 chr4 28502012 28502142 -155786520 + MER113 DNA MER1_type? 1 119 -402 245 327 167 18 chr4 28502897 28503065 -155785597 + L3 LINE CR1 404 596 -981 518 294 71 47 chr4 28503110 28503321 -155785341 + MIR SINE MIR 47 262 0 476 313 174 30 chr4 28503347 28503807 -155784855 + L3 LINE CR1 571 1096 -481 2719 52 12 0 chr4 28503808 28504133 -155784529 - L1PA8 LINE L1 -4 6168 5840 22 35 0 0 chr4 28505329 28505358 -155783304 + AT_rich Low_complexity Low_complexity 1 29 0 183 80 0 0 chr4 28505967 28505992 -155782670 + (ATATG)n Simple_repeat Simple_repeat 1 25 0 256 159 16 16 chr4 28506049 28506112 -155782550 + CT-rich Low_complexity Low_complexity 2 64 0 462 65 0 0 chr4 28506273 28506335 -155782327 + (CA)n Simple_repeat Simple_repeat 2 63 0 26 30 0 0 chr4 28509839 28509872 -155778790 + AT_rich Low_complexity Low_complexity 1 33 0 241 301 14 0 chr4 28510487 28510560 -155778102 - MIR3 SINE MIR -29 179 106 476 271 96 27 chr4 28510609 28510797 -155777865 - MIR SINE MIR -15 247 47 471 35 0 0 chr4 28511444 28511501 -155777161 + (TG)n Simple_repeat Simple_repeat 2 58 0 395 333 92 70 chr4 28511863 28512091 -155776571 - L2 LINE L2 -1 3271 3039 387 245 19 57 chr4 28512132 28512238 -155776424 + MIR SINE MIR 44 145 -63 230 346 68 44 chr4 28515028 28515323 -155773339 + L2 LINE L2 2848 3149 -123 422 310 70 0 chr4 28515749 28515878 -155772784 + L2 LINE L2 3133 3270 -2 27 0 0 0 chr4 28515934 28515961 -155772701 + AT_rich Low_complexity Low_complexity 1 27 0 205 372 101 0 chr4 28516066 28516195 -155772467 + L3 LINE CR1 1430 1571 -6 496 281 28 12 chr4 28517116 28517280 -155771382 - MIR SINE MIR -36 172 1 878 214 71 0 chr4 28517339 28517535 -155771127 + MER20 DNA MER1_type 10 219 0 212 139 0 23 chr4 28517715 28517758 -155770904 + (GAA)n Simple_repeat Simple_repeat 1 42 0 339 296 65 41 chr4 28519014 28519183 -155769479 + MIR SINE MIR 78 250 -12 584 179 38 0 chr4 28519916 28520022 -155768640 - L2 LINE L2 -21 3292 3183 487 221 25 33 chr4 28520073 28520195 -155768467 - MIR SINE MIR -39 223 103 950 110 0 0 chr4 28520280 28520416 -155768246 + L1PB1 LINE L1 6016 6151 0 2980 88 0 3 chr4 28520439 28520804 -155767858 + THE1B LTR MaLR 1 364 0 2491 86 0 0 chr4 28521395 28521699 -155766963 - AluSg SINE Alu -6 304 1 300 53 0 0 chr4 28522972 28523010 -155765652 + (TG)n Simple_repeat Simple_repeat 1 38 0 347 266 11 0 chr4 28523174 28523268 -155765394 - MLT1L LTR MaLR 0 615 521 1068 214 142 36 chr4 28523278 28523359 -155765303 + MLT1F1 LTR MaLR 11 82 -485 1153 178 13 44 chr4 28523359 28523584 -155765078 + MER20 DNA MER1_type 1 218 -1 1068 214 142 36 chr4 28523584 28523951 -155764711 + MLT1F1 LTR MaLR 82 567 0 501 263 193 29 chr4 28523951 28524224 -155764438 - MLT1L LTR MaLR -90 525 208 458 243 0 122 chr4 28524947 28525095 -155763567 + MIR SINE MIR 9 138 -70 2151 109 7 3 chr4 28525587 28525890 -155762772 - AluSg SINE Alu -4 306 3 406 200 24 146 chr4 28526206 28526299 -155762363 + MIR SINE MIR 13 80 -182 1997 83 0 93 chr4 28526299 28526641 -155762021 - AluSx SINE Alu 0 313 1 406 200 24 146 chr4 28526641 28526711 -155761951 + MIR SINE MIR 80 157 -105 716 323 30 4 chr4 28526722 28526957 -155761705 - MIR SINE MIR -9 253 13 24 32 0 0 chr4 28527756 28527787 -155760875 + AT_rich Low_complexity Low_complexity 1 31 0 432 275 84 39 chr4 28528374 28528552 -155760110 + MIR SINE MIR 6 191 -71 759 281 113 0 chr4 28528602 28528833 -155759829 + MIR SINE MIR 6 262 0 193 229 0 66 chr4 28528892 28528953 -155759709 - L2 LINE L2 -82 3231 3175 180 255 0 21 chr4 28528950 28528997 -155759665 + MIR SINE MIR 204 249 -13 * 2611 161 21 0 chr4 28529002 28529424 -155759238 + MSTB1 LTR MaLR 1 431 -1 272 242 0 22 chr4 28530067 28530158 -155758504 + CT-rich Low_complexity Low_complexity 4 92 0 397 203 0 0 chr4 28532165 28532234 -155756428 + L2 LINE L2 3245 3313 0 1729 175 27 0 chr4 28532450 28532742 -155755920 - AluJo SINE Alu -8 304 5 414 319 35 0 chr4 28532754 28532895 -155755767 - MIR3 SINE MIR -62 146 1 1336 138 69 0 chr4 28533345 28533548 -155755114 + AluJb SINE Alu 86 302 -10 1680 208 9 9 chr4 28535928 28536269 -155752393 + MER58B DNA MER1_type 1 341 0 2410 77 3 29 chr4 28536600 28536913 -155751749 + AluSq SINE Alu 1 305 -8 354 340 45 13 chr4 28536977 28537133 -155751529 + MIR3 SINE MIR 30 190 -18 236 35 0 0 chr4 28538353 28538382 -155750280 - LTR10D LTR ERV1 0 513 485 * 514 30 0 0 chr4 28538380 28538446 -155750216 - LTR10D LTR ERV1 -446 67 2 610 302 15 25 chr4 28538773 28538975 -155749687 - MIR SINE MIR -13 249 50 2236 81 3 3 chr4 28538975 28539259 -155749403 + AluY SINE Alu 14 297 -14 1044 201 246 40 chr4 28540229 28540274 -155748388 - MLT2B2 LTR ERVL 0 515 481 258 32 0 0 chr4 28540274 28540305 -155748357 + (CA)n Simple_repeat Simple_repeat 2 32 0 252 0 0 0 chr4 28540304 28540332 -155748330 + (GA)n Simple_repeat Simple_repeat 2 29 0 * 1044 201 246 40 chr4 28540305 28540713 -155747949 - MLT2B2 LTR ERVL -34 481 1 334 293 50 29 chr4 28540745 28540885 -155747777 - MIR3 SINE MIR -65 143 1 215 100 0 25 chr4 28540955 28540995 -155747667 + (ATG)n Simple_repeat Simple_repeat 3 41 0 182 304 266 0 chr4 28541067 28541146 -155747516 - MIR SINE MIR -115 147 48 192 330 26 26 chr4 28541266 28541381 -155747281 - L3b LINE CR1 -360 1223 1109 341 234 39 94 chr4 28541665 28541793 -155746869 + L2 LINE L2 3193 3313 0 199 171 0 0 chr4 28543227 28543262 -155745400 - MIR SINE MIR -6 256 222 440 288 139 53 chr4 28543874 28544211 -155744451 + L2 LINE L2 2948 3313 0 189 245 0 0 chr4 28544725 28544774 -155743888 + CT-rich Low_complexity Low_complexity 4 52 0 348 252 65 0 chr4 28546136 28546259 -155742403 - MER103 DNA DNA -33 133 3 208 38 113 0 chr4 28547434 28547487 -155741175 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 212 214 0 24 chr4 28547823 28547865 -155740797 - L2 LINE L2 -16 3256 3216 23 33 0 0 chr4 28547954 28547984 -155740678 + AT_rich Low_complexity Low_complexity 1 30 0 2105 73 0 73 chr4 28548134 28548448 -155740214 - AluY SINE Alu -20 291 1 209 257 47 17 chr4 28548609 28548694 -155739968 + MIR3 SINE MIR 98 154 -54 2200 133 0 0 chr4 28548912 28549212 -155739450 - AluSx SINE Alu -12 300 1 414 269 13 168 chr4 28549235 28549473 -155739189 + MIR SINE MIR 8 208 -54 1539 183 57 54 chr4 28550008 28550397 -155738265 + MLT1B LTR MaLR 1 390 0 575 170 11 16 chr4 28550437 28550627 -155738035 + GA-rich Low_complexity Low_complexity 1 189 0 887 134 0 43 chr4 28551035 28551199 -155737463 + L1PA10 LINE L1 6012 6168 0 22 0 0 0 chr4 28552731 28552753 -155735909 + AT_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr4 28553680 28553704 -155734958 + (A)n Simple_repeat Simple_repeat 1 24 0 194 341 43 22 chr4 28553754 28553892 -155734770 + L2 LINE L2 2719 2859 -455 476 303 65 11 chr4 28553996 28554257 -155734405 - LTR67 LTR ERVL -6 551 277 352 288 96 16 chr4 28554295 28554420 -155734242 - LTR67 LTR ERVL -352 205 71 239 330 42 17 chr4 28554607 28554725 -155733937 - MIR SINE MIR -50 212 92 852 288 118 19 chr4 28555704 28556121 -155732541 - MLT1J LTR MaLR -43 468 11 478 332 47 37 chr4 28556150 28556364 -155732298 + MIR SINE MIR 47 262 0 1047 231 0 14 chr4 28556381 28556602 -155732060 + MER58A DNA MER1_type 7 224 0 199 326 58 0 chr4 28556647 28556733 -155731929 + MIR SINE MIR 124 214 -48 215 154 0 19 chr4 28557178 28557230 -155731432 + GA-rich Low_complexity Low_complexity 2 52 0 560 284 21 7 chr4 28558222 28558364 -155730298 - MIR SINE MIR -62 146 25 477 285 92 14 chr4 28558500 28558707 -155729955 + L3b LINE CR1 1123 1345 -238 21 0 0 0 chr4 28558963 28558984 -155729678 + AT_rich Low_complexity Low_complexity 1 21 0 423 320 17 29 chr4 28559407 28559579 -155729083 + MIR3 SINE MIR 38 207 -1 388 335 38 32 chr4 28560074 28560259 -155728403 - MIR SINE MIR -42 220 35 317 347 51 23 chr4 28560863 28561079 -155727583 + L2 LINE L2 2837 3058 -214 5232 61 12 1 chr4 28561286 28561960 -155726702 - L1PA7 LINE L1 -1 6153 5473 201 283 0 0 chr4 28562222 28562275 -155726387 + (TA)n Simple_repeat Simple_repeat 2 54 0 334 83 70 38 chr4 28562352 28562509 -155726153 + (TA)n Simple_repeat Simple_repeat 1 162 0 24 0 0 0 chr4 28563016 28563040 -155725622 + AT_rich Low_complexity Low_complexity 1 24 0 219 241 194 74 chr4 28563078 28563186 -155725476 + L2 LINE L2 3193 3313 0 333 164 57 0 chr4 28563466 28563625 -155725037 + (TA)n Simple_repeat Simple_repeat 2 169 0 349 356 23 5 chr4 28565063 28565280 -155723382 - MIR SINE MIR -21 241 20 216 177 0 48 chr4 28565742 28565866 -155722796 + (TTA)n Simple_repeat Simple_repeat 2 119 0 518 341 27 27 chr4 28565872 28566095 -155722567 - MIR SINE MIR -26 236 14 235 274 16 0 chr4 28566701 28566763 -155721899 - MIR SINE MIR -10 252 190 499 239 61 49 chr4 28567056 28567219 -155721443 - MIR SINE MIR -90 172 8 231 295 105 75 chr4 28569127 28569327 -155719335 + L2 LINE L2 2956 3161 -111 796 230 85 0 chr4 28570181 28570381 -155718281 - MER58A DNA MER1_type -5 219 3 564 253 48 16 chr4 28570392 28570578 -155718084 + MER117 DNA MER1_type 2 193 -4 1869 133 41 3 chr4 28570993 28571287 -155717375 - AluSx SINE Alu -7 305 1 180 0 0 0 chr4 28573009 28573029 -155715633 + (TTG)n Simple_repeat Simple_repeat 2 21 0 290 195 13 0 chr4 28573536 28573613 -155715049 + CT-rich Low_complexity Low_complexity 2 79 0 270 0 0 0 chr4 28575564 28575594 -155713068 + (CA)n Simple_repeat Simple_repeat 1 30 0 261 0 0 0 chr4 28575593 28575622 -155713040 + (GA)n Simple_repeat Simple_repeat 2 30 0 * 1932 112 0 4 chr4 28575663 28575921 -155712741 - AluSc SINE Alu -52 257 1 330 336 22 29 chr4 28576606 28576743 -155711919 - MIR SINE MIR -57 151 16 641 289 97 36 chr4 28577026 28577372 -155711290 - L2 LINE L2 -292 3021 2662 220 228 53 18 chr4 28578287 28578344 -155710318 + MIR SINE MIR 36 94 -168 300 337 64 45 chr4 28578844 28579046 -155709616 + MIR3 SINE MIR 3 208 0 230 296 86 0 chr4 28579413 28579494 -155709168 - MIR SINE MIR -83 125 38 185 83 28 0 chr4 28579509 28579545 -155709117 + (TTTTTG)n Simple_repeat Simple_repeat 5 41 0 2132 131 7 0 chr4 28579547 28579844 -155708818 - AluSx SINE Alu -13 299 1 684 183 6 72 chr4 28580457 28580637 -155708025 + MER104 DNA Tc2 10 177 -3 209 305 0 0 chr4 28580708 28580767 -155707895 + CT-rich Low_complexity Low_complexity 2 60 0 407 309 179 45 chr4 28580767 28581213 -155707449 - L2 LINE L2 -1 3312 2807 21 0 0 0 chr4 28582626 28582647 -155706015 + AT_rich Low_complexity Low_complexity 1 21 0 541 277 45 55 chr4 28583583 28583803 -155704859 + MIR SINE MIR 31 248 -14 446 261 134 13 chr4 28583938 28584095 -155704567 - L2 LINE L2 0 3313 3138 203 250 0 0 chr4 28584857 28584905 -155703757 + (CA)n Simple_repeat Simple_repeat 1 48 0 234 353 47 0 chr4 28586589 28586674 -155701988 - L2 LINE L2 -27 3245 3157 25 0 0 0 chr4 28586701 28586726 -155701936 + AT_rich Low_complexity Low_complexity 1 25 0 2434 206 96 5 chr4 28587889 28588482 -155700180 - MLT1E1 LTR MaLR 0 654 8 226 218 0 18 chr4 28588599 28588654 -155700008 + MER116 DNA Mariner 4 57 -23 266 260 0 26 chr4 28588657 28588734 -155699928 + (CATATA)n Simple_repeat Simple_repeat 2 76 0 187 254 0 73 chr4 28589943 28589998 -155698664 - L2 LINE L2 -1 3312 3262 312 298 159 31 chr4 28590495 28590753 -155697909 - MER102b DNA MER1_type 0 341 51 343 269 167 21 chr4 28592518 28592752 -155695910 - L1ME4a LINE L1 -218 5903 5636 325 285 194 7 chr4 28592775 28592919 -155695743 - MIR SINE MIR -3 259 89 647 238 41 17 chr4 28595120 28595292 -155693370 + MIR SINE MIR 63 238 -24 249 298 37 78 chr4 28595832 28596050 -155692612 + L2 LINE L2 3079 3287 -26 367 232 10 10 chr4 28596289 28596388 -155692274 + MLT1I LTR MaLR 304 402 -7 358 313 188 14 chr4 28597680 28597888 -155690774 - MIR SINE MIR -7 255 12 536 309 43 0 chr4 28599506 28599736 -155688926 + Charlie8 DNA MER1_type 36 275 -2142 208 326 95 0 chr4 28599906 28600001 -155688661 + MIR3 SINE MIR 88 191 -17 300 330 54 9 chr4 28600547 28600659 -155688003 - MIR3 SINE MIR -3 205 89 375 73 0 0 chr4 28600692 28600747 -155687915 + (TG)n Simple_repeat Simple_repeat 1 55 0 658 286 80 9 chr4 28600788 28601012 -155687650 + MIR SINE MIR 23 262 0 191 375 8 33 chr4 28601056 28601176 -155687486 + MIR SINE MIR 34 150 -112 716 304 13 22 chr4 28601383 28601610 -155687052 - MIR SINE MIR -10 252 28 351 293 75 0 chr4 28602076 28602209 -155686453 + MIR SINE MIR 10 152 -110 632 213 170 32 chr4 28602265 28602518 -155686144 + MER5C DNA MER1_type 34 321 -3 290 322 81 13 chr4 28602961 28603110 -155685552 + MIR SINE MIR 48 206 -56 219 279 186 12 chr4 28604365 28604451 -155684211 - L2 LINE L2 0 3272 3172 272 298 19 48 chr4 28604589 28604693 -155683969 + L2 LINE L2 3172 3272 0 472 215 50 0 chr4 28605076 28605197 -155683465 - MER20 DNA MER1_type -9 210 84 383 285 93 13 chr4 28605342 28605493 -155683169 - MIR3 SINE MIR -10 198 36 197 62 0 31 chr4 28605602 28605634 -155683028 + (TAA)n Simple_repeat Simple_repeat 3 33 0 321 296 56 97 chr4 28605635 28605902 -155682760 - MIR SINE MIR -6 256 1 222 253 0 67 chr4 28606102 28606177 -155682485 - L2 LINE L2 -1 3271 3202 330 278 99 60 chr4 28606215 28606366 -155682296 + L2 LINE L2 3116 3272 0 215 271 119 25 chr4 28606411 28606529 -155682133 - MIR SINE MIR -64 198 70 792 277 42 47 chr4 28606588 28606825 -155681837 + MIR SINE MIR 5 235 -27 210 91 0 0 chr4 28606898 28606931 -155681731 + (CA)n Simple_repeat Simple_repeat 2 34 0 969 238 60 43 chr4 28607752 28608172 -155680490 + L1MC5 LINE L1 7455 7881 -80 26 0 0 0 chr4 28608685 28608711 -155679951 + AT_rich Low_complexity Low_complexity 1 26 0 2049 138 0 19 chr4 28608753 28609071 -155679591 + AluSx SINE Alu 1 312 0 22 0 0 0 chr4 28609224 28609246 -155679416 + AT_rich Low_complexity Low_complexity 1 22 0 980 190 58 0 chr4 28609481 28609655 -155679007 + MIR SINE MIR 6 189 -73 1760 274 28 15 chr4 28609683 28610288 -155678374 + L1ME3 LINE L1 5439 6051 -111 184 344 0 0 chr4 28610376 28610437 -155678225 + MIR SINE MIR 200 260 -2 390 257 87 60 chr4 28610607 28610790 -155677872 + MIR SINE MIR 8 195 -67 326 346 52 15 chr4 28611302 28611438 -155677224 + L2 LINE L2 3122 3262 -10 608 321 5 16 chr4 28611460 28611647 -155677015 - MER91A DNA MER1_type -3 193 9 269 309 25 12 chr4 28612950 28613031 -155675631 - MIR3 SINE MIR -16 192 111 214 274 16 16 chr4 28613153 28613215 -155675447 + MIR SINE MIR 92 153 -109 240 167 0 0 chr4 28613341 28613389 -155675273 + (CAT)n Simple_repeat Simple_repeat 1 48 0 1506 270 63 2 chr4 28614585 28615074 -155673588 + LTR33 LTR ERVL 1 519 -2 32 43 0 0 chr4 28618729 28618775 -155669887 + AT_rich Low_complexity Low_complexity 1 46 0 1696 201 77 29 chr4 28618865 28619308 -155669354 - MLT1C LTR MaLR -3 464 1 926 287 103 15 chr4 28620132 28620529 -155668133 + MLT1J2 LTR MaLR 13 444 -6 486 257 120 6 chr4 28620726 28620909 -155667753 + L2 LINE L2 3108 3311 -2 900 186 37 28 chr4 28620930 28621145 -155667517 - MIR SINE MIR -31 231 15 226 279 33 0 chr4 28622391 28622452 -155666210 + MIR SINE MIR 89 151 -111 222 91 0 0 chr4 28622624 28622657 -155666005 + (TG)n Simple_repeat Simple_repeat 2 34 0 210 118 0 0 chr4 28622688 28622722 -155665940 + (TA)n Simple_repeat Simple_repeat 1 34 0 362 219 0 62 chr4 28622723 28622819 -155665843 + L1MC4 LINE L1 6614 6703 -1339 2323 93 0 7 chr4 28623690 28623991 -155664671 - AluSg SINE Alu -11 299 1 2410 88 0 3 chr4 28624401 28624708 -155663954 + AluY SINE Alu 1 306 -5 651 301 22 26 chr4 28624888 28625117 -155663545 - MIR SINE MIR 0 262 35 218 191 0 0 chr4 28625729 28625771 -155662891 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 2291 113 0 0 chr4 28625850 28626150 -155662512 + AluSx SINE Alu 1 300 -12 2472 67 0 25 chr4 28626350 28626666 -155661996 - AluY SINE Alu -3 308 1 674 241 108 22 chr4 28627101 28627333 -155661329 + MIR SINE MIR 11 262 0 211 280 0 0 chr4 28628352 28628402 -155660260 + (TAG)n Simple_repeat Simple_repeat 1 50 0 713 298 30 25 chr4 28628411 28628646 -155660016 - MIR SINE MIR -26 236 1 377 288 34 8 chr4 28629526 28629644 -155659018 - MIR SINE MIR -94 168 48 437 267 19 0 chr4 28630121 28630226 -155658436 + MIR SINE MIR 76 182 -80 3909 170 10 16 chr4 28630243 28630950 -155657712 + L1MB3 LINE L1 5442 6144 -39 183 286 20 0 chr4 28631028 28631077 -155657585 + MIR SINE MIR 204 253 -9 2023 94 8 0 chr4 28632160 28632425 -155656237 + AluSx SINE Alu 1 267 -45 414 231 63 28 chr4 28634306 28634449 -155654213 - MIR SINE MIR 0 262 115 205 352 79 48 chr4 28634445 28634672 -155653990 - MIR SINE MIR -22 240 7 * 232 286 62 54 chr4 28636031 28636143 -155652519 + L2 LINE L2 3118 3230 -42 362 230 43 76 chr4 28636924 28637095 -155651567 + MIR SINE MIR 49 215 -47 280 353 7 13 chr4 28639129 28639282 -155649380 - MIR SINE MIR -6 256 105 257 74 0 56 chr4 28640313 28640367 -155648295 + (T)n Simple_repeat Simple_repeat 1 51 0 21 36 0 0 chr4 28640705 28640733 -155647929 + AT_rich Low_complexity Low_complexity 1 28 0 228 111 0 0 chr4 28641488 28641524 -155647138 + (TG)n Simple_repeat Simple_repeat 1 36 0 292 330 135 42 chr4 28641574 28641862 -155646800 - L2 LINE L2 -45 3227 2913 320 303 13 0 chr4 28641890 28641966 -155646696 - L2 LINE L2 -14 3258 3182 573 308 86 5 chr4 28642528 28642726 -155645936 - MIR SINE MIR -9 253 40 221 290 60 50 chr4 28643423 28643523 -155645139 + MIR3 SINE MIR 10 110 -98 1670 215 18 3 chr4 28644167 28644497 -155644165 + MER58B DNA MER1_type 6 340 -1 246 357 58 13 chr4 28645237 28645391 -155643271 + MIR3 SINE MIR 45 205 -3 97 25 0 0 chr4 28645596 28645714 -155642948 + AT_rich Low_complexity Low_complexity 1 118 0 28 29 0 0 chr4 28646093 28646128 -155642534 + AT_rich Low_complexity Low_complexity 1 35 0 2031 148 0 7 chr4 28646527 28646837 -155641825 - AluSc SINE Alu -1 308 1 195 162 0 0 chr4 28647091 28647128 -155641534 + (ATG)n Simple_repeat Simple_repeat 1 37 0 498 232 15 69 chr4 28647153 28647335 -155641327 - MIR SINE MIR -65 143 5 269 232 53 32 chr4 28647705 28647800 -155640862 + MIR SINE MIR 67 163 -99 231 180 164 0 chr4 28647804 28647865 -155640797 + MIR SINE MIR 120 190 -72 351 165 24 24 chr4 28647952 28648037 -155640625 - L1MA9 LINE L1 0 6312 6228 2812 88 14 8 chr4 28649014 28649376 -155639286 + THE1B LTR MaLR 1 364 0 549 258 90 6 chr4 28649653 28649831 -155638831 - MIR SINE MIR -22 240 48 3533 271 122 52 chr4 28650229 28651120 -155637542 - HAL1 LINE L1 -214 2293 1466 432 0 0 0 chr4 28651120 28651168 -155637494 + (TG)n Simple_repeat Simple_repeat 2 49 0 3533 271 122 52 chr4 28651168 28652369 -155636293 - HAL1 LINE L1 -1041 1466 53 432 281 103 38 chr4 28652497 28652989 -155635673 - L1ME LINE L1 -327 5794 5270 373 321 55 43 chr4 28653367 28654018 -155634644 - L1ME LINE L1 -1313 4833 4175 236 245 0 38 chr4 28654051 28654104 -155634558 - L1ME LINE L1 -2044 4102 4052 630 299 39 13 chr4 28654114 28654348 -155634314 - MIR SINE MIR 0 262 23 213 258 31 78 chr4 28655360 28655488 -155633174 + MIR SINE MIR 91 212 -50 208 311 27 14 chr4 28656607 28656681 -155631981 - L2 LINE L2 -30 3242 3168 729 261 5 5 chr4 28657375 28657563 -155631099 - MIR SINE MIR -5 257 70 471 315 92 27 chr4 28657784 28658076 -155630586 + L3b LINE CR1 1117 1427 -156 251 294 203 0 chr4 28658881 28658990 -155629672 - MIR SINE MIR -59 149 33 423 250 169 22 chr4 28659320 28659504 -155629158 + MIR SINE MIR 31 241 -21 237 293 137 72 chr4 28659798 28660061 -155628601 + L2 LINE L2 2817 3096 -176 779 260 43 17 chr4 28660284 28660515 -155628147 - MIR SINE MIR -21 241 5 221 303 92 0 chr4 28661099 28661175 -155627487 - MIR SINE MIR -57 151 69 1681 169 6 47 chr4 28661562 28661882 -155626780 + AluJo SINE Alu 1 307 -5 210 171 0 0 chr4 28661888 28661929 -155626733 + GA-rich Low_complexity Low_complexity 2 42 0 407 335 157 0 chr4 28661970 28662167 -155626495 + MIR SINE MIR 22 249 -13 441 257 29 0 chr4 28662392 28662497 -155626165 + MIR SINE MIR 81 188 -74 2543 48 7 7 chr4 28662976 28663305 -155625357 - AluY SINE Alu 0 329 1 282 95 0 0 chr4 28665424 28665466 -155623196 + (CA)n Simple_repeat Simple_repeat 2 43 0 351 229 125 31 chr4 28665886 28665982 -155622680 - MER5B DNA MER1_type -71 107 3 621 336 114 33 chr4 28666073 28666469 -155622193 - L3 LINE CR1 -134 1443 1016 379 301 98 16 chr4 28666513 28666737 -155621925 - MIR SINE MIR -6 256 20 220 345 97 9 chr4 28666723 28666836 -155621826 - L3 LINE CR1 -562 1015 893 * 463 302 39 0 chr4 28667244 28667373 -155621289 + MIR SINE MIR 13 146 -116 335 315 94 47 chr4 28667396 28667631 -155621031 + MLT1I LTR MaLR 10 255 -154 1982 155 45 79 chr4 28668552 28668611 -155620051 + MLT1C LTR MaLR 35 94 -373 2236 104 3 23 chr4 28668611 28668919 -155619743 - AluSx SINE Alu -10 302 1 1982 155 45 79 chr4 28668919 28669135 -155619527 + MLT1C LTR MaLR 94 316 -151 1173 241 77 31 chr4 28669135 28669484 -155619178 - MLT1A1 LTR MaLR 0 365 1 2032 130 179 16 chr4 28669488 28669856 -155618806 + MSTA LTR MaLR 1 428 0 1982 155 45 79 chr4 28669856 28670018 -155618644 + MLT1C LTR MaLR 319 463 -4 920 212 0 0 chr4 28670443 28670594 -155618068 + FRAM SINE Alu 1 151 -15 198 0 0 0 chr4 28672783 28672805 -155615857 + (A)n Simple_repeat Simple_repeat 1 22 0 281 122 14 149 chr4 28673377 28673405 -155615257 + MER5A DNA MER1_type 33 63 -126 1868 33 0 5 chr4 28673405 28673617 -155615045 + L1PA5 LINE L1 5931 6141 -13 281 122 14 149 chr4 28673617 28673662 -155615000 + MER5A DNA MER1_type 63 96 -93 2509 117 104 15 chr4 28674544 28674937 -155613725 + MSTA LTR MaLR 1 428 0 753 184 0 0 chr4 28674968 28675109 -155613553 + L1MA4A LINE L1 6152 6292 -11 287 340 48 0 chr4 28675305 28675408 -155613254 - L2 LINE L2 -1 3271 3164 289 323 98 30 chr4 28676589 28676753 -155611909 - MIR SINE MIR -74 188 14 189 263 70 18 chr4 28677942 28677999 -155610663 - L2 LINE L2 0 3272 3213 571 251 69 17 chr4 28678374 28678549 -155610113 + MIR SINE MIR 67 250 -12 390 250 23 55 chr4 28679011 28679139 -155609523 - MER5A DNA MER1_type -53 136 13 1042 201 300 43 chr4 28680057 28680494 -155608168 + MLT1H LTR MaLR 1 549 0 209 327 38 44 chr4 28681145 28681304 -155607358 - L2 LINE L2 -473 2841 2684 220 322 99 13 chr4 28681316 28681468 -155607194 - L2 LINE L2 -1281 2033 1869 29 0 0 0 chr4 28681851 28681880 -155606782 + AT_rich Low_complexity Low_complexity 1 29 0 508 280 43 33 chr4 28682006 28682217 -155606445 - MIR SINE MIR -8 254 42 469 0 33 0 chr4 28682492 28682553 -155606109 + (CA)n Simple_repeat Simple_repeat 1 63 0 606 233 84 101 chr4 28682676 28682794 -155605868 + L2 LINE L2 3023 3141 -172 378 0 0 0 chr4 28682794 28682836 -155605826 + (CA)n Simple_repeat Simple_repeat 2 43 0 606 233 84 101 chr4 28682836 28683013 -155605649 + L2 LINE L2 3141 3313 0 433 335 30 26 chr4 28684215 28684460 -155604202 - MIR SINE MIR -17 245 4 700 257 12 82 chr4 28685641 28685898 -155602764 - MER102b DNA MER1_type 0 341 103 309 26 0 0 chr4 28686776 28686814 -155601848 + (TGGA)n Simple_repeat Simple_repeat 3 40 0 908 242 88 75 chr4 28687041 28687337 -155601325 + MLT1L LTR MaLR 150 456 -159 2173 125 0 0 chr4 28687337 28687641 -155601021 + AluSx SINE Alu 1 304 -8 908 242 88 75 chr4 28687641 28687799 -155600863 + MLT1L LTR MaLR 456 610 -5 291 171 79 26 chr4 28689723 28689799 -155598863 - L2 LINE L2 -1 3312 3233 335 296 115 46 chr4 28689899 28690203 -155598459 - L2 LINE L2 -100 3213 2889 204 115 0 58 chr4 28690473 28690525 -155598137 + (CAAAAA)n Simple_repeat Simple_repeat 2 50 0 426 330 67 21 chr4 28690686 28690880 -155597782 + MIR SINE MIR 35 237 -25 22 56 0 0 chr4 28693110 28693146 -155595516 + AT_rich Low_complexity Low_complexity 1 36 0 217 279 215 38 chr4 28693568 28693726 -155594936 - MIR SINE MIR -50 212 27 592 286 49 16 chr4 28693894 28694079 -155594583 - MIR SINE MIR -4 258 68 2214 151 31 14 chr4 28694079 28694437 -155594225 + MLT1A1 LTR MaLR 2 365 0 370 224 153 0 chr4 28694515 28694613 -155594049 + MIR SINE MIR 73 185 -77 399 113 0 0 chr4 28695849 28695911 -155592751 + (TG)n Simple_repeat Simple_repeat 1 62 0 189 0 0 0 chr4 28695912 28695933 -155592729 + (TA)n Simple_repeat Simple_repeat 2 22 0 * 225 0 0 0 chr4 28695932 28695957 -155592705 + (GA)n Simple_repeat Simple_repeat 2 26 0 433 300 111 76 chr4 28696032 28696402 -155592260 - L2 LINE L2 -6 3266 2884 183 80 0 0 chr4 28696508 28696533 -155592129 + (TG)n Simple_repeat Simple_repeat 1 25 0 230 252 84 76 chr4 28697277 28697408 -155591254 + MER102a DNA MER1_type 193 324 -6 493 241 35 65 chr4 28699489 28699659 -155589003 - MIR SINE MIR -70 192 28 324 0 0 0 chr4 28699763 28699799 -155588863 + (CA)n Simple_repeat Simple_repeat 1 36 0 203 300 12 12 chr4 28701021 28701101 -155587561 + (TA)n Simple_repeat Simple_repeat 1 80 0 630 234 43 72 chr4 28701701 28701910 -155586752 + MIR SINE MIR 59 261 -1 441 0 0 0 chr4 28702027 28702076 -155586586 + (TG)n Simple_repeat Simple_repeat 1 49 0 197 105 0 26 chr4 28703022 28703046 -155585616 + (TAA)n Simple_repeat Simple_repeat 1 25 -12 5239 40 0 5 chr4 28703046 28703652 -155585010 + L1PA4 LINE L1 5548 6150 -5 197 105 0 26 chr4 28703652 28703665 -155584997 + (TAA)n Simple_repeat Simple_repeat 25 37 0 598 293 63 9 chr4 28703673 28703895 -155584767 - MIR SINE MIR -12 250 17 319 264 7 107 chr4 28703925 28704065 -155584597 - MIR SINE MIR -41 221 96 243 276 0 0 chr4 28704167 28704225 -155584437 + MIR3 SINE MIR 97 154 -54 342 331 203 19 chr4 28704338 28704698 -155583964 + L2 LINE L2 2846 3271 -1 368 275 108 30 chr4 28705543 28705710 -155582952 - MIR SINE MIR -20 242 63 275 260 187 0 chr4 28710083 28710206 -155578456 + MIR SINE MIR 21 166 -96 2420 129 17 50 chr4 28710213 28710331 -155578331 + MLT1B LTR MaLR 1 121 -269 2340 101 0 0 chr4 28710331 28710628 -155578034 + AluSg SINE Alu 3 299 -11 2420 129 17 50 chr4 28710628 28710912 -155577750 + MLT1B LTR MaLR 121 390 0 2071 63 4 4 chr4 28712633 28712885 -155575777 - AluY SINE Alu -16 295 44 758 281 62 57 chr4 28715638 28715886 -155572776 - L2 LINE L2 -4 3309 3057 2048 141 0 3 chr4 28715886 28716192 -155572470 + AluSx SINE Alu 1 305 -7 758 281 62 57 chr4 28716192 28716331 -155572331 - L2 LINE L2 -256 3057 2920 206 258 0 76 chr4 28716389 28716455 -155572207 - L2 LINE L2 -377 2937 2877 396 291 157 22 chr4 28716703 28716971 -155571691 - L2 LINE L2 -5 3308 3005 372 86 43 0 chr4 28717083 28717153 -155571509 + (TAGA)n Simple_repeat Simple_repeat 1 73 0 247 330 116 9 chr4 28717198 28717310 -155571352 - L2 LINE L2 -5 3267 3144 197 396 101 0 chr4 28717498 28717647 -155571015 - L2 LINE L2 0 3272 3109 227 343 15 0 chr4 28717916 28717983 -155570679 - L2 LINE L2 -219 3053 2986 306 0 0 0 chr4 28718574 28718608 -155570054 + (TG)n Simple_repeat Simple_repeat 2 35 0 406 204 259 19 chr4 28718625 28718787 -155569875 - MIR SINE MIR -30 232 32 392 256 44 19 chr4 28719506 28719666 -155568996 + MER103 DNA DNA 1 164 -2 679 300 86 4 chr4 28720272 28720529 -155568133 + L2 LINE L2 3024 3301 -12 1244 132 24 5 chr4 28721259 28721464 -155567198 + AluSg/x SINE Alu 99 307 -5 185 262 155 24 chr4 28721977 28722061 -155566601 - L2 LINE L2 -18 3295 3201 399 323 23 8 chr4 28724207 28724340 -155564322 - MIR SINE MIR -122 140 6 1608 203 33 15 chr4 28724716 28725046 -155563616 - MLT1A2 LTR MaLR -38 336 1 546 198 97 123 chr4 28725078 28725305 -155563357 - MIR SINE MIR -32 230 10 214 343 0 0 chr4 28727394 28727467 -155561195 + GA-rich Low_complexity Low_complexity 1 73 0 235 330 59 17 chr4 28728498 28728616 -155560046 + MIR3 SINE MIR 5 127 -81 1563 169 88 0 chr4 28728836 28729108 -155559554 + AluJb SINE Alu 1 296 -16 185 245 41 0 chr4 28729144 28729193 -155559469 - L2 LINE L2 -98 3215 3165 552 214 18 18 chr4 28729227 28729339 -155559323 + MER81 DNA DNA 1 112 -2 324 305 124 19 chr4 28729584 28729689 -155558973 - MIR SINE MIR -63 145 30 458 308 0 0 chr4 28730542 28730659 -155558003 + MIR SINE MIR 4 120 -142 745 304 144 59 chr4 28730880 28731962 -155556700 + L2 LINE L2 2119 3305 -8 198 419 41 12 chr4 28732091 28732263 -155556399 + L3b LINE CR1 1253 1429 -154 579 222 78 30 chr4 28732384 28732551 -155556111 + MER104 DNA MER2_type 4 178 -2 444 295 66 53 chr4 28732567 28732702 -155555960 - MIR SINE MIR -11 251 110 2261 106 3 0 chr4 28732702 28733004 -155555658 - AluSg SINE Alu -7 303 1 444 295 66 53 chr4 28733004 28733112 -155555550 - MIR SINE MIR -152 110 5 356 206 167 10 chr4 28733705 28733807 -155554855 - L2 LINE L2 -5 3308 3191 224 256 182 58 chr4 28734034 28734276 -155554386 + L2 LINE L2 3025 3296 -17 300 283 46 101 chr4 28734881 28735100 -155553562 + MIR SINE MIR 20 226 -36 217 373 0 13 chr4 28735264 28735339 -155553323 - L2 LINE L2 -39 3233 3160 3523 83 21 4 chr4 28735341 28735457 -155553205 + L1PB1 LINE L1 5666 5779 -390 468 0 0 0 chr4 28735457 28735509 -155553153 + (CA)n Simple_repeat Simple_repeat 2 53 0 3523 83 21 4 chr4 28735509 28735888 -155552774 + L1PB1 LINE L1 5779 6169 0 229 320 105 29 chr4 28735888 28736060 -155552602 + MIR SINE MIR 28 212 -50 2162 119 0 7 chr4 28736087 28736389 -155552273 - AluSq SINE Alu -13 300 1 209 216 0 0 chr4 28738041 28738078 -155550584 + (CATATA)n Simple_repeat Simple_repeat 6 42 0 23 0 0 0 chr4 28738599 28738622 -155550040 + AT_rich Low_complexity Low_complexity 1 23 0 40 0 0 0 chr4 28738676 28738716 -155549946 + AT_rich Low_complexity Low_complexity 1 40 0 287 173 36 100 chr4 28738935 28738954 -155549708 - MIR SINE MIR -55 153 134 15786 130 14 38 chr4 28738954 28741233 -155547429 + Tigger1 DNA MER2_type 1 2219 -199 1822 167 6 22 chr4 28741233 28741550 -155547112 - AluSx SINE Alu 0 312 1 15786 130 14 38 chr4 28741550 28741745 -155546917 + Tigger1 DNA MER2_type 2219 2417 -1 287 173 36 100 chr4 28741745 28741835 -155546827 - MIR SINE MIR -74 134 51 5456 186 36 11 chr4 28741925 28742107 -155546555 + L1MC3 LINE L1 6670 6846 -939 384 71 0 0 chr4 28742107 28742163 -155546499 + (CA)n Simple_repeat Simple_repeat 1 56 0 5456 186 36 11 chr4 28742163 28743069 -155545593 + L1MC3 LINE L1 6846 7785 0 1686 142 127 0 chr4 28743084 28743344 -155545318 + AluSx SINE Alu 2 294 -8 364 296 94 25 chr4 28744200 28744359 -155544303 - L3 LINE CR1 -1 1576 1407 1376 249 63 40 chr4 28744389 28744625 -155544037 + L2 LINE L2 2829 3058 -255 2257 87 14 0 chr4 28744625 28744911 -155543751 + AluSc SINE Alu 1 290 -19 1376 249 63 40 chr4 28744911 28745148 -155543514 + L2 LINE L2 3058 3313 0 311 221 47 35 chr4 28745845 28745931 -155542731 - L2 LINE L2 0 3272 3186 424 313 61 0 chr4 28746620 28746751 -155541911 + L3 LINE CR1 1435 1573 -4 231 36 0 0 chr4 28746834 28746862 -155541800 + (A)n Simple_repeat Simple_repeat 1 28 0 643 234 0 0 chr4 28746911 28747039 -155541623 + FLAM_A SINE Alu 1 128 -5 543 217 89 45 chr4 28747175 28747332 -155541330 + MIR SINE MIR 48 211 -51 339 274 6 97 chr4 28747773 28747955 -155540707 - MER5A DNA MER1_type -5 176 6 250 252 194 15 chr4 28748070 28748217 -155540445 - MIR SINE MIR -62 146 20 549 320 77 0 chr4 28748998 28749220 -155539442 - MIR SINE MIR -4 258 20 703 255 39 20 chr4 28750585 28750789 -155537873 + MIR SINE MIR 17 224 -38 295 253 0 71 chr4 28750868 28750967 -155537695 - MIR SINE MIR -65 197 106 438 319 158 27 chr4 28751719 28752054 -155536608 + L3 LINE CR1 1083 1461 -116 277 306 8 58 chr4 28753080 28753201 -155535461 - MIR SINE MIR -56 206 92 266 250 29 103 chr4 28753657 28753793 -155534869 - L2 LINE L2 0 3313 3188 553 301 121 0 chr4 28754049 28754255 -155534407 + L2 LINE L2 2840 3070 -243 1016 137 62 52 chr4 28754256 28754467 -155534195 + MER7A DNA MER2_type 1 211 -135 279 266 168 21 chr4 28754743 28754886 -155533776 + MIR3 SINE MIR 24 187 -21 471 154 273 0 chr4 28757394 28757504 -155531158 - Charlie4 DNA MER1_type 0 1961 1822 190 244 50 144 chr4 28757935 28758095 -155530567 - L2 LINE L2 -36 3277 3133 261 0 0 0 chr4 28758258 28758287 -155530375 + (CA)n Simple_repeat Simple_repeat 2 30 0 441 176 0 0 chr4 28758288 28758356 -155530306 + Tigger2 DNA MER2_type 2 69 -2649 * 1253 109 31 10 chr4 28758346 28758539 -155530123 + Tigger2 DNA MER2_type 2273 2469 -249 700 186 8 0 chr4 28758539 28758668 -155529994 - FRAM SINE Alu 0 40 1 244 265 60 43 chr4 28758845 28758962 -155529700 - L2 LINE L2 0 3313 3195 274 260 43 61 chr4 28759603 28759798 -155528864 - L1ME4a LINE L1 -146 5975 5785 1844 125 88 0 chr4 28759798 28760070 -155528592 - AluSx SINE Alu -16 296 1 274 260 43 61 chr4 28760070 28760151 -155528511 - L1ME4a LINE L1 -336 5785 5704 1682 109 0 0 chr4 28761149 28761360 -155527302 + AluSq SINE Alu 1 211 -102 277 282 0 12 chr4 28761414 28761499 -155527163 + A-rich Low_complexity Low_complexity 3 86 0 384 237 153 17 chr4 28762208 28762326 -155526336 + L2 LINE L2 3179 3312 -1 335 129 12 35 chr4 28762343 28762428 -155526234 + GA-rich Low_complexity Low_complexity 3 85 0 2015 134 6 16 chr4 28762703 28763017 -155525645 - AluSx SINE Alu -1 311 1 1177 132 0 42 chr4 28764446 28764635 -155524027 + AluSx SINE Alu 5 185 -127 1612 187 14 14 chr4 28765786 28766075 -155522587 + AluJo SINE Alu 1 289 -23 266 167 17 0 chr4 28766081 28766141 -155522521 + GA-rich Low_complexity Low_complexity 1 61 0 319 243 81 36 chr4 28766337 28766448 -155522214 - L2 LINE L2 -4 3309 3194 224 77 26 0 chr4 28766472 28766511 -155522151 + (TA)n Simple_repeat Simple_repeat 2 41 0 231 240 90 50 chr4 28766527 28766627 -155522035 - MIR SINE MIR -13 249 146 349 285 58 29 chr4 28766673 28766810 -155521852 - MIR SINE MIR -113 149 9 1103 211 9 44 chr4 28767139 28767366 -155521296 + MER20 DNA MER1_type 1 219 0 597 284 0 25 chr4 28767489 28767686 -155520976 + Charlie7 DNA MER1_type 2420 2611 -1 335 237 141 22 chr4 28767742 28767877 -155520785 + MIR SINE MIR 102 252 -10 233 267 48 38 chr4 28767920 28768025 -155520637 + MIR SINE MIR 87 192 -70 212 310 50 20 chr4 28768639 28768739 -155519923 - MIR SINE MIR -110 152 50 739 265 31 31 chr4 28769032 28769289 -155519373 + MIR SINE MIR 6 262 0 740 290 41 41 chr4 28769764 28770009 -155518653 + MIR SINE MIR 6 250 -12 2545 56 0 0 chr4 28770591 28770897 -155517765 - AluY SINE Alu -5 306 1 222 91 0 0 chr4 28771139 28771172 -155517490 + (TG)n Simple_repeat Simple_repeat 2 34 0 203 229 43 71 chr4 28773212 28773282 -155515380 - L2 LINE L2 -11 3302 3235 1736 150 0 0 chr4 28773575 28773829 -155514833 - AluSx SINE Alu -7 305 52 3245 54 0 0 chr4 28773929 28774319 -155514343 - L1P3 LINE L1 -374 5798 5409 386 293 21 48 chr4 28774444 28774632 -155514030 - L2 LINE L2 -16 3297 3115 212 267 13 0 chr4 28774682 28774757 -155513905 + MIR SINE MIR 178 253 -9 502 256 159 19 chr4 28774782 28774989 -155513673 - MIR SINE MIR -21 241 6 229 174 0 0 chr4 28775794 28775840 -155512822 - MIR SINE MIR -97 165 120 240 226 11 54 chr4 28776401 28776494 -155512168 + GA-rich Low_complexity Low_complexity 3 91 0 207 0 0 0 chr4 28776810 28776833 -155511829 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 773 0 11 0 chr4 28777311 28777404 -155511258 - L1HS LINE L1 -98 6057 5964 750 27 0 7 chr4 28777403 28777496 -155511166 + L1HS LINE L1 6062 6165 -3 * 228 276 11 11 chr4 28777733 28777820 -155510842 + GA-rich Low_complexity Low_complexity 2 88 0 649 275 66 37 chr4 28777967 28778211 -155510451 + MIR SINE MIR 12 262 0 235 167 19 0 chr4 28778386 28778440 -155510222 + A-rich Low_complexity Low_complexity 3 57 0 713 291 46 12 chr4 28778777 28778998 -155509664 - MIR SINE MIR -1 261 34 408 246 20 116 chr4 28779026 28779225 -155509437 + MIR3 SINE MIR 19 198 -10 385 320 79 63 chr4 28779234 28779628 -155509034 - L2 LINE L2 0 3313 2914 4202 161 26 20 chr4 28780172 28780907 -155507755 + L1MB3 LINE L1 5444 6182 -1 241 221 44 29 chr4 28781080 28781148 -155507514 + L2 LINE L2 2985 3053 -219 28 0 0 26 chr4 28781788 28781809 -155506853 + AT_rich Low_complexity Low_complexity 1 22 -16 2438 75 0 7 chr4 28781809 28782114 -155506548 + AluY SINE Alu 1 303 -8 28 0 0 26 chr4 28782114 28782131 -155506531 + AT_rich Low_complexity Low_complexity 22 38 0 429 297 29 35 chr4 28782167 28782341 -155506321 - MIR SINE MIR -63 145 7 421 316 43 7 chr4 28782913 28783052 -155505610 - MIR SINE MIR -118 144 1 184 91 30 0 chr4 28783398 28783431 -155505231 - L2 LINE L2 0 3313 3280 400 311 59 10 chr4 28783753 28783959 -155504703 + MIR SINE MIR 36 251 -11 324 248 178 51 chr4 28785193 28785407 -155503255 + L2 LINE L2 3007 3247 -25 2434 90 0 0 chr4 28785422 28785721 -155502941 + AluSq SINE Alu 1 299 -14 399 127 0 0 chr4 28786182 28786245 -155502417 + (CA)n Simple_repeat Simple_repeat 1 63 0 494 278 139 19 chr4 28786712 28786921 -155501741 + MIR SINE MIR 11 244 -18 327 279 189 46 chr4 28788072 28788352 -155500310 + HAL1 LINE L1 981 1300 -1207 286 213 74 65 chr4 28788825 28788933 -155499729 - MIR SINE MIR -139 123 15 181 208 181 0 chr4 28788976 28789048 -155499614 + MIR SINE MIR 140 224 -38 336 152 48 9 chr4 28790451 28790556 -155498106 + (TA)n Simple_repeat Simple_repeat 2 110 0 327 146 0 0 chr4 28790780 28790835 -155497827 + (TATATG)n Simple_repeat Simple_repeat 6 60 0 225 178 0 0 chr4 28790839 28790884 -155497778 - LTR66 LTR ERVL -171 439 395 233 108 0 242 chr4 28790889 28791009 -155497653 - L1MC4 LINE L1 -1339 6703 6613 * 267 290 0 11 chr4 28790917 28791010 -155497652 + L1MC4 LINE L1 6614 6705 -1337 728 169 7 0 chr4 28791010 28791146 -155497516 + MER53 DNA DNA 20 156 -33 271 227 248 21 chr4 28791509 28791650 -155497012 - MIR SINE MIR -32 230 58 287 268 108 76 chr4 28791994 28792151 -155496511 - MIR SINE MIR -95 167 6 943 273 56 4 chr4 28793045 28793294 -155495368 + MIR SINE MIR 1 262 0 238 118 0 0 chr4 28793340 28793374 -155495288 + MLT1I LTR MaLR 370 403 -6 26 0 0 0 chr4 28794119 28794145 -155494517 + AT_rich Low_complexity Low_complexity 1 26 0 387 0 0 0 chr4 28795115 28795158 -155493504 + (T)n Simple_repeat Simple_repeat 1 43 0 853 269 68 64 chr4 28795429 28795868 -155492794 + MLT1J LTR MaLR 17 457 -54 265 329 0 0 chr4 28796195 28796277 -155492385 - MIR SINE MIR -86 176 95 425 188 0 0 chr4 28796484 28796569 -155492093 - L1MA7 LINE L1 0 6291 6207 223 296 56 74 chr4 28796600 28796708 -155491954 + L2 LINE L2 3164 3269 -3 814 258 50 21 chr4 28799149 28799389 -155489273 - MIR SINE MIR -2 260 14 447 323 8 0 chr4 28799451 28799581 -155489081 + MER94 DNA DNA 3 133 -1 458 252 16 63 chr4 28799698 28799825 -155488837 - L2 LINE L2 -6 3266 3146 228 204 0 0 chr4 28799894 28799948 -155488714 - LTR66 LTR ERVL -159 451 398 * 232 143 0 0 chr4 28799916 28799958 -155488704 + LTR66 LTR ERVL 398 439 -171 424 289 46 23 chr4 28800073 28800259 -155488403 + MIR SINE MIR 2 185 -66 2253 104 3 0 chr4 28800321 28800610 -155488052 + AluSp SINE Alu 2 291 -22 216 345 24 12 chr4 28800924 28801008 -155487654 - MIR SINE MIR -72 136 52 935 264 37 0 chr4 28801350 28801566 -155487096 - MER58A DNA MER1_type 0 224 1 2168 138 0 0 chr4 28802799 28803110 -155485552 + AluSx SINE Alu 1 311 -1 313 319 64 11 chr4 28803585 28803679 -155484983 - MIR SINE MIR -58 150 52 405 341 122 33 chr4 28803847 28804367 -155484295 - L2 LINE L2 -44 3269 2714 1161 123 0 0 chr4 28804381 28804536 -155484126 - FRAM SINE Alu -23 153 1 994 308 87 26 chr4 28804536 28805043 -155483619 - L2 LINE L2 -593 2721 2184 604 239 6 31 chr4 28805071 28805234 -155483428 - L1ME LINE L1 -5865 205 47 1037 259 26 83 chr4 28805320 28805826 -155482836 + L1ME LINE L1 396 872 -5198 2148 43 0 8 chr4 28805876 28806131 -155482531 - AluY SINE Alu 0 311 59 1250 128 0 24 chr4 28806816 28807027 -155481635 - AluY SINE Alu -105 206 1 1865 87 0 21 chr4 28807032 28807274 -155481388 + AluY SINE Alu 53 289 -22 566 246 60 0 chr4 28807300 28807467 -155481195 + L1ME LINE L1 899 1075 -5008 297 274 48 24 chr4 28807485 28807609 -155481053 + MER65B LTR ERV1 1 127 -404 279 247 123 0 chr4 28808055 28808136 -155480526 - L2 LINE L2 -1154 2160 2070 653 264 107 19 chr4 28809282 28809621 -155479041 + L1ME1 LINE L1 5501 5864 -302 1427 208 69 58 chr4 28809860 28810221 -155478441 + MLT1A1 LTR MaLR 1 365 0 403 281 51 66 chr4 28810782 28810978 -155477684 + MER117 DNA MER1_type 1 193 -4 1272 159 27 36 chr4 28811220 28811440 -155477222 + MER20 DNA MER1_type 1 218 -1 464 269 130 6 chr4 28812243 28812420 -155476242 + MIR SINE MIR 45 241 -21 597 178 82 48 chr4 28812644 28812790 -155475872 - MIR SINE MIR -42 220 70 271 260 26 0 chr4 28812889 28812966 -155475696 - L2 LINE L2 -1 3312 3234 360 0 0 0 chr4 28813182 28813222 -155475440 + (A)n Simple_repeat Simple_repeat 1 40 0 272 181 19 124 chr4 28813894 28813999 -155474663 + MIR3 SINE MIR 111 204 -4 207 0 0 0 chr4 28814617 28814640 -155474022 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1632 169 17 17 chr4 28814691 28814993 -155473669 + AluJo SINE Alu 1 302 -10 589 268 38 34 chr4 28818219 28818428 -155470234 - MER63A DNA MER1_type 0 210 1 870 37 0 9 chr4 28818910 28819019 -155469643 + LTR7 LTR ERV1 1 108 -342 11613 91 12 10 chr4 28819121 28820751 -155467911 + HERVH LTR ERV1 1355 2987 -4726 816 145 41 0 chr4 28820745 28820890 -155467772 + HERVH LTR ERV1 3140 3290 -4423 * 950 137 0 0 chr4 28820889 28821028 -155467634 + HERVH LTR ERV1 3500 3638 -4075 * 1224 150 0 1 chr4 28821018 28821379 -155467283 + HERVH LTR ERV1 4744 5149 -2564 1194 118 88 10 chr4 28821380 28821584 -155467078 + HERVH LTR ERV1 5600 5819 -1894 * 2620 71 48 13 chr4 28821582 28821961 -155466701 + HERVH LTR ERV1 7322 7713 0 1806 100 43 9 chr4 28821961 28822349 -155466313 + LTR7 LTR ERV1 1 448 -2 340 325 59 13 chr4 28823462 28823739 -155464923 + L2 LINE L2 2743 3031 -241 196 295 164 0 chr4 28823863 28823924 -155464738 + L2 LINE L2 3212 3282 -31 561 303 87 30 chr4 28824179 28824268 -155464394 - MIR SINE MIR -10 252 169 1062 240 90 90 chr4 28824268 28824823 -155463839 + MLT1H1 LTR MaLR 1 555 0 561 303 87 30 chr4 28824823 28824964 -155463698 - MIR SINE MIR -93 169 9 799 296 103 5 chr4 28825361 28825729 -155462933 + L2 LINE L2 2910 3313 0 23 0 0 0 chr4 28825899 28825922 -155462740 + AT_rich Low_complexity Low_complexity 1 23 0 1860 60 0 0 chr4 28825922 28826139 -155462523 - L1PA8 LINE L1 -17 6155 5939 202 27 0 54 chr4 28826248 28826285 -155462377 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 932 155 0 0 chr4 28826287 28826416 -155462246 - FLAM_C SINE Alu -4 129 1 252 344 0 11 chr4 28826558 28826648 -155462014 + L2 LINE L2 3224 3312 -1 246 311 30 19 chr4 28826886 28827015 -155461647 + MIR SINE MIR 20 150 -62 2179 117 0 7 chr4 28827098 28827397 -155461265 + AluSx SINE Alu 1 297 -15 26 64 0 0 chr4 28827461 28827508 -155461154 + AT_rich Low_complexity Low_complexity 1 47 0 2040 141 0 3 chr4 28827790 28828103 -155460559 + AluSx SINE Alu 1 312 0 613 171 31 194 chr4 28828140 28828362 -155460300 - MER5A DNA MER1_type 0 189 4 266 192 269 13 chr4 28828372 28828450 -155460212 - MIR SINE MIR -55 207 110 222 325 0 24 chr4 28828461 28828544 -155460118 + MIR SINE MIR 54 134 -128 198 280 0 0 chr4 28829270 28829320 -155459342 + MIR SINE MIR 201 250 -12 277 335 114 44 chr4 28829339 28829566 -155459096 - MIR SINE MIR -19 243 1 23 0 0 0 chr4 28830025 28830048 -155458614 + AT_rich Low_complexity Low_complexity 1 23 0 268 250 188 46 chr4 28830552 28830920 -155457742 - L1ME4a LINE L1 -3 6118 5699 762 169 0 24 chr4 28830926 28831050 -155457612 + FLAM_A SINE Alu 7 127 -15 21 0 0 0 chr4 28831050 28831071 -155457591 + AT_rich Low_complexity Low_complexity 1 21 0 413 294 85 13 chr4 28831071 28831224 -155457438 - L1ME4a LINE L1 -404 5717 5554 373 280 88 57 chr4 28831461 28831654 -155457008 - L2 LINE L2 0 3272 3074 353 257 62 69 chr4 28831763 28831907 -155456755 - MIR SINE MIR -57 205 63 1081 198 120 3 chr4 28833048 28833331 -155455331 - L1MB2 LINE L1 -8 6163 5848 189 0 0 0 chr4 28833331 28833352 -155455310 + (TG)n Simple_repeat Simple_repeat 2 22 0 * 207 0 0 0 chr4 28833351 28833374 -155455288 + (TA)n Simple_repeat Simple_repeat 1 23 0 261 0 0 0 chr4 28833481 28833510 -155455152 + (CA)n Simple_repeat Simple_repeat 2 30 0 315 67 0 0 chr4 28833510 28833555 -155455107 - L1MB2 LINE L1 -350 5833 5789 2320 82 3 0 chr4 28833974 28834280 -155454382 - AluY SINE Alu -4 307 1 207 167 0 0 chr4 28835449 28835491 -155453171 + (TA)n Simple_repeat Simple_repeat 1 42 0 631 324 83 25 chr4 28835614 28836012 -155452650 - L2 LINE L2 -1 3312 2892 340 258 108 0 chr4 28836021 28836114 -155452548 + L2 LINE L2 3204 3306 -7 225 355 19 9 chr4 28836134 28836241 -155452421 - L2 LINE L2 -425 2889 2782 213 376 55 9 chr4 28836338 28836447 -155452215 + L2 LINE L2 3154 3267 -5 454 198 4 203 chr4 28836454 28836681 -155451981 - MIR SINE MIR -15 247 66 1059 215 30 116 chr4 28837479 28837875 -155450787 + MLT1A1 LTR MaLR 4 365 0 14258 195 57 9 chr4 28837998 28839749 -155448913 - L1PB1 LINE L1 0 6867 5201 186 71 0 0 chr4 28839749 28839777 -155448885 + (TTTAG)n Simple_repeat Simple_repeat 3 30 0 14258 195 57 9 chr4 28839777 28844465 -155444197 - L1PB1 LINE L1 -1666 5201 105 505 118 26 0 chr4 28844468 28844544 -155444118 - AluS SINE Alu -231 82 5 180 287 356 17 chr4 28844778 28844952 -155443710 - MIR SINE MIR -1 261 29 1679 177 9 58 chr4 28845091 28845241 -155443421 + AluJb SINE Alu 1 128 -184 1455 173 0 4 chr4 28845241 28845490 -155443172 + AluJb SINE Alu 51 298 -14 1679 177 9 58 chr4 28845490 28845667 -155442995 + AluJb SINE Alu 128 312 0 182 121 61 0 chr4 28847090 28847123 -155441539 - L2 LINE L2 -94 3219 3185 212 280 178 8 chr4 28847838 28847956 -155440706 + MIR SINE MIR 120 257 -5 1351 197 85 61 chr4 28848158 28848651 -155440011 - MLT1D LTR MaLR 0 505 1 2332 81 13 3 chr4 28848848 28849155 -155439507 + AluY SINE Alu 1 310 -1 2394 96 0 0 chr4 28850158 28850461 -155438201 + AluSx SINE Alu 1 303 -9 288 354 16 16 chr4 28850963 28851090 -155437572 - MIR SINE MIR -24 238 112 493 283 68 34 chr4 28851188 28851425 -155437237 + LTR16C LTR ERVL 134 378 -113 335 343 10 0 chr4 28851533 28851632 -155437030 - MIR SINE MIR -162 100 1 2174 132 36 36 chr4 28851846 28852209 -155436453 + THE1B LTR MaLR 2 364 0 878 253 71 4 chr4 28852257 28852482 -155436180 - MIR SINE MIR -3 259 20 841 209 84 14 chr4 28852496 28852711 -155435951 - MIR SINE MIR -21 241 12 262 345 195 6 chr4 28852756 28853104 -155435558 - L3 LINE CR1 -203 1374 961 243 345 134 21 chr4 28853337 28853479 -155435183 - L2 LINE L2 -5 3267 3110 1581 282 133 13 chr4 28853484 28853753 -155434909 + L2 LINE L2 2090 2325 -989 1837 200 65 16 chr4 28853753 28854198 -155434464 + MLT1C LTR MaLR 1 467 0 1581 282 133 13 chr4 28854198 28854637 -155434025 + L2 LINE L2 2325 2883 -431 447 287 121 27 chr4 28854666 28854889 -155433773 + L2 LINE L2 3067 3310 -3 203 216 0 59 chr4 28854967 28855018 -155433644 + MIR SINE MIR 123 170 -92 189 196 0 0 chr4 28855718 28855769 -155432893 + CT-rich Low_complexity Low_complexity 1 51 0 405 0 0 0 chr4 28856594 28856639 -155432023 + (TGGA)n Simple_repeat Simple_repeat 1 45 0 233 341 0 0 chr4 28858927 28859018 -155429644 + (TA)n Simple_repeat Simple_repeat 2 92 0 289 337 0 0 chr4 28859024 28859113 -155429549 + MIR SINE MIR 174 262 0 245 288 30 0 chr4 28859129 28859195 -155429467 + L2 LINE L2 3242 3309 -4 * 271 305 3 90 chr4 28859193 28859359 -155429303 - MIR SINE MIR -71 137 4 374 241 7 83 chr4 28861269 28861414 -155427248 - MIR SINE MIR -48 214 81 795 255 43 14 chr4 28861774 28862056 -155426606 - MER113 DNA MER1_type? -122 399 110 284 229 0 48 chr4 28862069 28862152 -155426510 - MER116 DNA Mariner -1 79 1 4117 55 2 2 chr4 28862575 28863100 -155425562 - L1PA8 LINE L1 0 6172 5648 2149 115 0 32 chr4 28863470 28863782 -155424880 + AluSx SINE Alu 1 302 -10 397 283 12 81 chr4 28863967 28864081 -155424581 + MIR3 SINE MIR 46 146 -62 478 244 71 36 chr4 28864081 28864249 -155424413 - MER5B DNA MER1_type 0 178 5 397 283 12 81 chr4 28864249 28864307 -155424355 + MIR3 SINE MIR 146 206 -2 579 235 117 31 chr4 28864473 28864635 -155424027 + MIR SINE MIR 15 190 -72 363 285 42 18 chr4 28865236 28865401 -155423261 + L1ME4a LINE L1 5953 6121 0 1434 98 5 0 chr4 28866181 28866385 -155422277 + L1PA13 LINE L1 5958 6162 -1 1934 207 14 7 chr4 28866385 28866815 -155421847 + L1M4 LINE L1 5324 5756 -422 429 237 123 9 chr4 28867353 28867467 -155421195 - L2 LINE L2 -4 3309 3183 2121 127 0 0 chr4 28869866 28870176 -155418486 + AluSx SINE Alu 1 310 0 529 248 128 78 chr4 28870890 28871035 -155417627 + L1ME4a LINE L1 5689 5825 -296 2056 105 46 8 chr4 28871035 28871386 -155417276 + L1MA4A LINE L1 5940 6303 0 529 248 128 78 chr4 28871386 28871590 -155417072 + L1ME4a LINE L1 5825 6068 -53 2223 97 10 0 chr4 28871590 28871888 -155416774 - AluSq SINE Alu -12 301 1 529 248 128 78 chr4 28871888 28871936 -155416726 + L1ME4a LINE L1 6068 6112 -9 556 336 162 42 chr4 28872025 28873136 -155415526 - L2 LINE L2 -202 3070 1824 28802 110 9 15 chr4 28874544 28879255 -155409407 + L1P3 LINE L1 748 5506 -955 1985 118 7 43 chr4 28879255 28879559 -155409103 + AluSc SINE Alu 1 293 -16 1279 60 0 22 chr4 28879559 28879579 -155409083 + (GAAA)n Simple_repeat Simple_repeat 1 199 0 1279 60 0 22 chr4 28879579 28879763 -155408899 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 6930 46 24 0 chr4 28879835 28880783 -155407879 + L1PA7 LINE L1 5176 6144 -10 28 29 0 0 chr4 28880927 28880962 -155407700 + AT_rich Low_complexity Low_complexity 1 35 0 738 279 62 12 chr4 28881169 28881409 -155407253 + MIR SINE MIR 11 262 0 218 300 89 0 chr4 28881535 28881625 -155407037 - MIR SINE MIR -56 206 109 23 33 0 0 chr4 28882175 28882205 -155406457 + AT_rich Low_complexity Low_complexity 1 30 0 254 191 36 91 chr4 28882451 28882561 -155406101 - L1ME4a LINE L1 -209 5912 5809 315 0 0 0 chr4 28884825 28884860 -155403802 + (CA)n Simple_repeat Simple_repeat 1 35 0 196 313 30 20 chr4 28885382 28885481 -155403181 - L2 LINE L2 -263 3009 2910 332 228 53 0 chr4 28885514 28885628 -155403034 + MER113 DNA MER1_type? 30 149 -372 859 164 0 0 chr4 28885649 28885777 -155402885 + FLAM_C SINE Alu 2 129 -14 474 318 89 4 chr4 28885886 28886122 -155402540 + MER113 DNA MER1_type? 262 517 -4 1025 153 11 23 chr4 28886515 28886691 -155401971 - MER104 DNA MER2_type -4 176 3 375 291 87 8 chr4 28886832 28886959 -155401703 + MIR SINE MIR 1 137 -125 392 289 35 35 chr4 28887505 28887695 -155400967 - MIR SINE MIR -69 139 2 304 302 7 50 chr4 28888849 28888988 -155399674 + L1ME LINE L1 5299 5431 -731 1271 224 58 52 chr4 28889183 28889513 -155399149 + MLT1J LTR MaLR 22 353 -158 339 266 13 76 chr4 28889730 28889888 -155398774 + MLT1F LTR MaLR 40 187 -355 1434 269 87 78 chr4 28890209 28891147 -155397515 - L1MEd LINE L1 -5169 950 4 23 0 0 0 chr4 28891453 28891476 -155397186 + AT_rich Low_complexity Low_complexity 1 23 0 2199 110 14 3 chr4 28891603 28891895 -155396767 - AluSx SINE Alu -15 297 3 3052 107 18 31 chr4 28891959 28892409 -155396253 + MLT2A1 LTR ERVL 1 444 0 201 228 88 0 chr4 28892518 28892575 -155396087 + MIR SINE MIR 176 237 -25 238 208 0 0 chr4 28892583 28892631 -155396031 + (ATG)n Simple_repeat Simple_repeat 2 49 0 2672 49 0 0 chr4 28892822 28893129 -155395533 - AluY SINE Alu -4 307 1 358 282 81 20 chr4 28893349 28893498 -155395164 - MIR SINE MIR -1 261 104 545 242 79 24 chr4 28893528 28893693 -155394969 + MIR SINE MIR 89 262 0 466 209 181 0 chr4 28893685 28893790 -155394872 - MIR SINE MIR -107 155 32 * 476 291 74 30 chr4 28894196 28894426 -155394236 - MIR SINE MIR 0 262 23 235 255 0 0 chr4 28894623 28894670 -155393992 - L2 LINE L2 -18 3254 3208 * 468 317 0 0 chr4 28894666 28894789 -155393873 + L2 LINE L2 3150 3272 0 451 329 66 0 chr4 28894802 28894988 -155393674 - MIR SINE MIR -64 198 3 185 330 230 0 chr4 28895283 28895383 -155393279 - L3 LINE CR1 -2 1575 1453 2221 99 0 3 chr4 28895793 28896115 -155392547 + AluSg SINE Alu 1 321 0 336 167 19 0 chr4 28896528 28896582 -155392080 - Charlie8 DNA MER1_type -2238 179 125 350 338 39 45 chr4 28896719 28896899 -155391763 + MIR SINE MIR 25 196 -65 207 157 39 0 chr4 28896936 28896987 -155391675 + A-rich Low_complexity Low_complexity 2 54 0 400 216 0 16 chr4 28897670 28897795 -155390867 + CT-rich Low_complexity Low_complexity 2 124 0 652 252 0 0 chr4 28899531 28899670 -155388992 + MIR SINE MIR 112 250 -12 642 245 80 51 chr4 28899791 28900239 -155388423 + L1MC5 LINE L1 7259 7638 -323 793 281 160 41 chr4 28900242 28900730 -155387932 + MLT1F1 LTR MaLR 14 559 -8 464 254 78 19 chr4 28900741 28900946 -155387716 + L1MC5 LINE L1 7709 7925 -36 286 304 78 9 chr4 28901130 28901245 -155387417 + MIR SINE MIR 17 139 -123 192 257 0 0 chr4 28902095 28902165 -155386497 + (CATATA)n Simple_repeat Simple_repeat 3 72 0 27 0 0 0 chr4 28902285 28902312 -155386350 + AT_rich Low_complexity Low_complexity 1 27 0 2260 145 33 34 chr4 28902315 28902834 -155385828 + MLT2A2 LTR ERVL 1 517 -37 335 117 67 192 chr4 28902844 28902964 -155385698 + MER103 DNA DNA 15 119 -47 5810 123 13 2 chr4 28903157 28903998 -155384664 - L1MC1 LINE L1 0 6333 5484 1523 212 17 38 chr4 28904103 28904284 -155384378 + MER58B DNA MER1_type 1 173 -2247 2144 107 7 7 chr4 28904284 28904592 -155384070 - AluSq SINE Alu -5 308 1 1523 212 17 38 chr4 28904592 28904755 -155383907 + MER58B DNA MER1_type 173 338 -3 509 291 128 26 chr4 28905650 28905877 -155382785 - MIR SINE MIR -12 250 1 363 210 340 0 chr4 28906249 28906349 -155382313 - MER94 DNA DNA 0 134 1 549 246 34 17 chr4 28906352 28906527 -155382135 - MER5B DNA MER1_type 0 178 1 534 178 149 136 chr4 28906609 28906719 -155381943 + MLT1J LTR MaLR 214 321 -190 2230 129 7 0 chr4 28906719 28907028 -155381634 + AluSx SINE Alu 1 311 -1 534 178 149 136 chr4 28907028 28907159 -155381503 + MLT1J LTR MaLR 321 458 -53 226 381 79 62 chr4 28907624 28908078 -155380584 - L2 LINE L2 -2 3270 2809 2284 98 3 0 chr4 28908560 28908855 -155379807 + AluSx SINE Alu 1 296 -16 252 250 0 26 chr4 28908915 28908991 -155379671 + GA-rich Low_complexity Low_complexity 3 76 0 537 317 40 18 chr4 28909339 28909577 -155379085 + L1ME4a LINE L1 5653 5898 -223 37 69 0 0 chr4 28909809 28909881 -155378781 + AT_rich Low_complexity Low_complexity 1 72 0 195 278 96 35 chr4 28909962 28910077 -155378585 + MIR SINE MIR 88 209 -53 315 303 10 40 chr4 28910212 28910311 -155378351 - L2 LINE L2 -12 3260 3165 187 312 153 19 chr4 28910393 28910550 -155378112 + MIR SINE MIR 83 260 -2 270 0 0 0 chr4 28911164 28911194 -155377468 + (TG)n Simple_repeat Simple_repeat 2 31 0 1989 200 19 6 chr4 28912585 28912945 -155375717 - MLT1A1 LTR MaLR 0 365 1 715 150 20 34 chr4 28912966 28913113 -155375549 + MER53 DNA DNA 15 159 -30 2432 50 7 3 chr4 28913125 28913422 -155375240 - AluY SINE Alu -13 298 1 576 245 39 52 chr4 28913632 28913865 -155374797 - MER113 DNA MER1_type? -288 233 4 1303 175 8 51 chr4 28913876 28914110 -155374552 + MER58A DNA MER1_type 1 224 0 21 0 0 0 chr4 28914777 28914798 -155373864 + AT_rich Low_complexity Low_complexity 1 21 0 2650 45 0 0 chr4 28916075 28916386 -155372276 - AluY SINE Alu 0 311 1 22 0 0 0 chr4 28917190 28917212 -155371450 + AT_rich Low_complexity Low_complexity 1 22 0 224 284 74 53 chr4 28918785 28918880 -155369782 - MIR SINE MIR -70 192 96 1530 172 4 0 chr4 28919083 28919339 -155369323 - AluJb SINE Alu -3 309 53 691 160 141 113 chr4 28919472 28919640 -155369022 + MER20 DNA MER1_type 1 178 -41 1725 151 10 51 chr4 28919640 28919952 -155368710 + AluJo SINE Alu 1 299 -13 691 160 141 113 chr4 28919952 28919996 -155368666 + MER20 DNA MER1_type 178 219 0 230 211 14 42 chr4 28920148 28920219 -155368443 + CT-rich Low_complexity Low_complexity 2 70 0 232 331 65 24 chr4 28920266 28920435 -155368227 - MIR SINE MIR -66 196 21 232 297 144 82 chr4 28921118 28921463 -155367199 - L2 LINE L2 -17 3255 2886 2262 104 10 0 chr4 28921463 28921762 -155366900 - AluSx SINE Alu -10 302 1 675 254 77 9 chr4 28921921 28922063 -155366599 + MER112 DNA MER1_type 8 172 -88 2256 56 3 14 chr4 28922063 28922350 -155366312 - AluY SINE Alu -5 306 23 675 254 77 9 chr4 28922350 28922427 -155366235 + MER112 DNA MER1_type 172 242 -18 2191 107 0 22 chr4 28922647 28922966 -155365696 + AluSx SINE Alu 1 312 0 411 370 40 32 chr4 28923061 28923464 -155365198 - L2 LINE L2 -862 2452 2047 346 208 13 26 chr4 28923555 28923632 -155365030 + L2 LINE L2 3238 3313 0 255 302 228 31 chr4 28923650 28924101 -155364561 - L2 LINE L2 -1294 2020 1481 535 261 149 64 chr4 28927136 28927511 -155361151 + L2 LINE L2 2866 3272 0 418 309 11 25 chr4 28927509 28927694 -155360968 - MIR SINE MIR -65 143 17 * 993 200 68 9 chr4 28927953 28928173 -155360489 + MER96B DNA MER1_type? 5 237 -180 248 320 172 36 chr4 28929132 28929406 -155359256 - L2 LINE L2 -246 3067 2832 396 0 0 0 chr4 28929406 28929450 -155359212 + (TTG)n Simple_repeat Simple_repeat 2 45 0 248 320 172 36 chr4 28929450 28929471 -155359191 - L2 LINE L2 -481 2832 2815 1452 104 92 126 chr4 28929471 28929788 -155358874 - AluSg1 SINE Alu -3 306 1 248 320 172 36 chr4 28929788 28930103 -155358559 - L2 LINE L2 -498 2815 2371 280 138 181 11 chr4 28930763 28930857 -155357805 - Charlie7 DNA MER1_type -69 2543 2434 231 158 0 0 chr4 28932091 28932129 -155356533 + L2 LINE L2 3268 3305 -8 2067 145 7 0 chr4 28932331 28932641 -155356021 + AluSx SINE Alu 1 312 0 436 194 84 105 chr4 28932652 28932843 -155355819 + Charlie8 DNA MER1_type 90 276 -2141 438 151 66 13 chr4 28933462 28933614 -155355048 + GA-rich Low_complexity Low_complexity 3 162 0 26 0 0 0 chr4 28935066 28935092 -155353570 + AT_rich Low_complexity Low_complexity 1 26 0 2170 115 0 16 chr4 28935353 28935665 -155352997 - AluSg SINE Alu -3 307 1 1806 134 29 11 chr4 28935837 28936144 -155352518 - AluSx SINE Alu 0 312 1 34 0 0 0 chr4 28936247 28936281 -155352381 + AT_rich Low_complexity Low_complexity 1 34 0 1839 151 26 3 chr4 28936589 28936894 -155351768 + AluJb SINE Alu 1 312 0 2120 131 7 0 chr4 28937597 28937903 -155350759 + AluSx SINE Alu 1 308 -4 1467 117 15 38 chr4 28938016 28938280 -155350382 - L1M3 LINE L1 -814 5520 5263 2274 95 7 10 chr4 28938403 28938709 -155349953 - AluSx SINE Alu -5 307 3 2739 182 104 34 chr4 28989856 28990862 -155297800 - LTR12 LTR ERV1 -193 2245 26 535 94 0 0 chr4 28990862 28990926 -155297736 + AluSp SINE Alu 147 210 -103 226 189 94 0 chr4 28991360 28991413 -155297249 - MER112 DNA MER1_type -185 75 18 2110 121 0 32 chr4 28991424 28991739 -155296923 + AluSx SINE Alu 1 305 -7 1732 104 0 21 chr4 28992147 28992388 -155296274 + AluSg/x SINE Alu 70 305 -7 2294 84 3 10 chr4 28994533 28994829 -155293833 + AluSp SINE Alu 1 294 -19 1154 130 97 0 chr4 28994934 28995119 -155293543 - AluJb SINE Alu -109 203 1 901 275 89 48 chr4 28995421 28995808 -155292854 + L2 LINE L2 2182 2589 -725 2152 189 29 0 chr4 28995808 28996157 -155292505 - MLT1A1 LTR MaLR -4 361 3 901 275 89 48 chr4 28996157 28996183 -155292479 + L2 LINE L2 2589 2612 -702 654 148 0 0 chr4 28996285 28996386 -155292276 + AluSp/q SINE Alu 210 310 -3 338 291 59 35 chr4 28996453 28996656 -155292006 + L1MC4a LINE L1 5191 5398 -748 241 338 20 27 chr4 28996679 28996827 -155291835 + L1MC4a LINE L1 5449 5595 -2213 400 237 51 74 chr4 28996876 28996961 -155291701 + L1MC4a LINE L1 5701 5786 -2022 1797 222 37 6 chr4 28996961 28997313 -155291349 + MLT1A1 LTR MaLR 3 365 0 400 237 51 74 chr4 28997313 28997442 -155291220 + L1MC4a LINE L1 5786 5910 -1898 2210 126 0 0 chr4 28997617 28997919 -155290743 - AluSx SINE Alu -6 306 5 406 263 0 0 chr4 28998065 28998160 -155290502 - MER96B DNA MER1_type? 0 417 323 800 159 36 7 chr4 28998165 28998303 -155290359 - L1MC1 LINE L1 0 6333 6192 1565 142 19 15 chr4 28998306 28998566 -155290096 + MER1B DNA MER1_type 1 261 -78 315 115 39 0 chr4 28998587 28998639 -155290023 - L1MC1 LINE L1 -137 6196 6143 2521 59 10 3 chr4 28999848 29000154 -155288508 + AluY SINE Alu 1 308 -3 527 249 79 32 chr4 29000159 29000348 -155288314 - L1ME LINE L1 -309 5812 5615 1948 134 7 29 chr4 29000359 29000665 -155287997 + AluSx SINE Alu 2 300 -12 2167 82 0 0 chr4 29000808 29001078 -155287584 - AluSc SINE Alu -39 270 1 629 122 31 0 chr4 29001081 29001179 -155287483 - L1MC1 LINE L1 -191 6142 6042 493 313 79 28 chr4 29001181 29001395 -155287267 - HsTC2 DNA Tc2 -1197 701 477 295 253 13 0 chr4 29001378 29001453 -155287209 - HsTC2 DNA Tc2 -1598 300 225 * 223 392 54 0 chr4 29001672 29001802 -155286860 + L2 LINE L2 3136 3272 0 844 217 49 10 chr4 29002360 29002563 -155286099 - MLT1H1 LTR MaLR -7 548 338 341 143 0 63 chr4 29002668 29002731 -155285931 - MER103 DNA DNA -77 89 31 1278 237 176 15 chr4 29003469 29003945 -155284717 + MLT1H1 LTR MaLR 3 555 0 182 292 42 14 chr4 29003949 29004021 -155284641 - MIR SINE MIR -14 248 175 840 161 63 0 chr4 29004228 29004371 -155284291 - FRAM SINE Alu -10 156 5 2226 107 20 0 chr4 29004409 29004708 -155283954 + AluSg SINE Alu 1 305 -5 194 353 39 20 chr4 29005018 29005120 -155283542 + L2 LINE L2 3169 3272 0 311 275 48 85 chr4 29005220 29005656 -155283006 + L1M4 LINE L1 4487 4906 -1240 25 0 0 0 chr4 29005890 29005915 -155282747 + AT_rich Low_complexity Low_complexity 1 25 0 964 195 6 23 chr4 29006653 29006827 -155281835 + FAM SINE Alu 4 174 -1 2347 88 0 3 chr4 29006971 29007276 -155281386 - AluSg SINE Alu -6 304 1 385 258 105 21 chr4 29007285 29007475 -155281187 - L1MC5 LINE L1 -77 7884 7679 27 0 0 0 chr4 29009725 29009752 -155278910 + AT_rich Low_complexity Low_complexity 1 27 0 25 0 0 28 chr4 29010386 29010405 -155278257 + AT_rich Low_complexity Low_complexity 1 20 -15 2349 97 7 0 chr4 29010405 29010714 -155277948 + AluSp SINE Alu 1 311 -2 25 0 0 28 chr4 29010714 29010730 -155277932 + AT_rich Low_complexity Low_complexity 20 35 0 2080 104 0 57 chr4 29010856 29011173 -155277489 + AluSx SINE Alu 1 299 -13 2083 75 0 0 chr4 29011301 29011554 -155277108 + AluY SINE Alu 1 253 -58 911 189 24 24 chr4 29011675 29011844 -155276818 + FRAM SINE Alu 1 161 -15 403 245 93 26 chr4 29011882 29012033 -155276629 + MIR SINE MIR 21 181 -81 1507 238 96 22 chr4 29013490 29013800 -155274862 - MER119 DNA MER1_type -2 581 226 2440 69 3 10 chr4 29013800 29014103 -155274559 - AluY SINE Alu -10 301 1 1507 238 96 22 chr4 29014103 29014242 -155274420 - MER119 DNA MER1_type -357 226 99 2141 145 0 0 chr4 29014959 29015270 -155273392 - AluSq SINE Alu -2 311 1 477 203 59 8 chr4 29015961 29016079 -155272583 - L2 LINE L2 0 3313 3190 1927 137 3 58 chr4 29016141 29016469 -155272193 + AluSx SINE Alu 1 310 -2 588 229 86 0 chr4 29016764 29016904 -155271758 + MER96 DNA MER1_type? 24 175 0 343 143 17 12 chr4 29017034 29017104 -155271558 + AluJ/FLAM SINE Alu 1 60 -242 2298 96 3 0 chr4 29018680 29018981 -155269681 - AluSx SINE Alu -10 302 1 2158 130 0 0 chr4 29019509 29019816 -155268846 + AluSg SINE Alu 1 307 -3 404 145 0 13 chr4 29019816 29019892 -155268770 + (GGAA)n Simple_repeat Simple_repeat 1 75 0 417 293 209 5 chr4 29020256 29020471 -155268191 - MIR SINE MIR -2 260 2 191 270 95 32 chr4 29020621 29020684 -155267978 - MIR SINE MIR -187 75 9 815 275 83 45 chr4 29020703 29021004 -155267658 - L2 LINE L2 0 3313 2994 2163 100 4 0 chr4 29021004 29021283 -155267379 + AluSp SINE Alu 24 303 -10 815 275 83 45 chr4 29021283 29021356 -155267306 - L2 LINE L2 -319 2994 2925 545 238 169 43 chr4 29021757 29021988 -155266674 + LTR16A LTR ERVL 57 316 -134 * 1071 253 130 93 chr4 29021985 29022546 -155266116 - MER21B LTR ERV1 -149 714 133 466 305 26 13 chr4 29022809 29022960 -155265702 + LTR16A LTR ERVL 292 444 -6 523 171 191 26 chr4 29022967 29023119 -155265543 + HERV16 LTR ERVL 2 178 -4818 2091 115 24 0 chr4 29023261 29023549 -155265113 - AluSx SINE Alu -17 295 1 358 300 7 47 chr4 29024918 29025068 -155263594 + MIR SINE MIR 36 179 -83 486 268 70 6 chr4 29025232 29025392 -155263270 + MIR SINE MIR 19 189 -62 2328 82 7 0 chr4 29026671 29026965 -155261697 - AluSg SINE Alu -14 296 1 457 248 57 28 chr4 29026983 29027124 -155261538 + MIR SINE MIR 7 151 -111 272 211 14 14 chr4 29027333 29027404 -155261258 + (CACG)n Simple_repeat Simple_repeat 3 73 0 331 286 171 88 chr4 29027624 29028179 -155260483 - L1M2 LINE L1 -5532 1317 717 180 111 0 0 chr4 29031077 29031104 -155257558 + (GGAGAA)n Simple_repeat Simple_repeat 2 28 0 254 185 93 0 chr4 29031929 29031983 -155256679 - L1MC/D LINE L1 -2020 5788 5730 323 271 101 0 chr4 29031987 29032126 -155256536 - L1MC/D LINE L1 -488 5633 5523 714 271 55 6 chr4 29033499 29033680 -155254982 + HERV16 LTR ERVL 535 724 -4272 2909 88 3 3 chr4 29033994 29034358 -155254304 + THE1B LTR MaLR 1 364 0 2027 298 30 35 chr4 29034391 29034459 -155254203 + HERV16 LTR ERVL 848 915 -4081 2531 79 3 0 chr4 29034459 29034764 -155253898 - AluSp SINE Alu -7 306 1 2027 298 30 35 chr4 29034764 29036052 -155252610 + HERV16 LTR ERVL 915 2269 -2727 3569 254 92 47 chr4 29036071 29036721 -155251941 + L1MCa LINE L1 1 620 -5944 1788 132 9 69 chr4 29036721 29037039 -155251623 + AluJb SINE Alu 1 299 -13 3569 254 92 47 chr4 29037039 29037879 -155250783 + L1MCa LINE L1 620 1420 -5144 743 169 0 70 chr4 29037879 29038021 -155250641 + FLAM_C SINE Alu 2 133 0 3569 254 92 47 chr4 29038021 29038543 -155250119 + L1MCa LINE L1 1420 2354 -4210 5604 171 74 20 chr4 29038554 29038868 -155249794 + L1M4c LINE L1 29 325 -6059 1882 123 49 3 chr4 29038868 29039153 -155249509 - AluSx SINE Alu -14 298 1 5604 171 74 20 chr4 29039153 29039987 -155248675 + L1M4c LINE L1 325 1239 -5145 389 322 55 30 chr4 29039987 29040189 -155248473 + PABL_B LTR ERV1 1 207 -460 609 191 15 44 chr4 29040235 29040371 -155248291 + AluJ SINE Alu 2 133 -169 1182 92 61 0 chr4 29040388 29040552 -155248110 - LTR12 LTR ERV1 0 714 541 465 190 35 17 chr4 29040652 29040826 -155247836 + (TGGA)n Simple_repeat Simple_repeat 1 177 0 1604 196 3 7 chr4 29040922 29041213 -155247449 - AluJo SINE Alu -22 290 1 660 120 0 0 chr4 29041375 29041467 -155247195 + AluJb SINE Alu 42 133 -179 22 0 0 0 chr4 29041467 29041489 -155247173 + AT_rich Low_complexity Low_complexity 1 22 0 384 22 0 0 chr4 29041489 29041534 -155247128 + (CA)n Simple_repeat Simple_repeat 2 46 0 232 129 0 0 chr4 29041534 29041565 -155247097 + AluJb SINE Alu 131 161 -142 243 0 0 0 chr4 29041565 29041592 -155247070 + (CA)n Simple_repeat Simple_repeat 2 28 0 1093 158 0 0 chr4 29041592 29041750 -155246912 + AluJb SINE Alu 131 288 -24 450 253 20 143 chr4 29042203 29042293 -155246369 - MIR SINE MIR -31 231 186 1924 118 37 0 chr4 29042293 29042563 -155246099 - AluSx SINE Alu -26 286 7 450 253 20 143 chr4 29042563 29042697 -155245965 - MIR SINE MIR -76 186 37 194 299 131 56 chr4 29042751 29042901 -155245761 + L3 LINE CR1 1325 1497 -80 467 275 115 95 chr4 29042901 29043447 -155245215 + LTR67 LTR ERVL 1 557 0 194 299 131 56 chr4 29043447 29043510 -155245152 + L3 LINE CR1 1497 1554 -23 258 168 0 0 chr4 29043627 29043679 -155244983 - MLT2D LTR ERVL -2 412 374 404 208 31 9 chr4 29043698 29043925 -155244737 + GA-rich Low_complexity Low_complexity 1 232 0 2102 158 22 25 chr4 29043928 29044295 -155244367 - MLT2D LTR ERVL -48 366 1 2059 148 0 0 chr4 29044577 29044882 -155243780 + AluSx SINE Alu 1 305 -7 2863 108 0 29 chr4 29045167 29045622 -155243040 + HERVH LTR ERV1 2554 2995 -4718 888 136 27 0 chr4 29045601 29045748 -155242914 + HERVH LTR ERV1 3140 3290 -4423 * 3358 122 8 2 chr4 29045738 29046237 -155242425 + HERVH LTR ERV1 3492 3993 -3720 4184 149 6 8 chr4 29046239 29046902 -155241760 + HERVH LTR ERV1 4488 5149 -2564 1406 127 19 0 chr4 29046903 29047116 -155241546 + HERVH LTR ERV1 5600 5816 -1897 2596 72 48 3 chr4 29047117 29047492 -155241170 + HERVH LTR ERV1 7322 7713 0 3631 64 0 7 chr4 29047492 29047943 -155240719 + LTR7 LTR ERV1 1 448 -2 1625 92 0 0 chr4 29047945 29048152 -155240510 - AluSg SINE Alu -103 207 1 414 243 0 27 chr4 29048157 29048268 -155240394 + MLT1K LTR MaLR 463 570 -18 517 130 26 0 chr4 29048270 29048347 -155240315 - AluJ/FRAM SINE Alu -10 302 224 1798 126 0 0 chr4 29048469 29048716 -155239946 - AluSq SINE Alu -66 247 1 204 382 48 10 chr4 29049029 29049236 -155239426 + L3b LINE CR1 1270 1484 -99 1676 149 127 0 chr4 29049690 29049958 -155238704 + AluSx SINE Alu 1 302 0 1694 129 19 8 chr4 29050636 29050900 -155237762 - L1MA5A LINE L1 -8 6289 6023 1374 254 71 88 chr4 29051131 29051606 -155237056 - L2 LINE L2 0 3313 2832 300 27 0 0 chr4 29051606 29051643 -155237019 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2189 90 4 0 chr4 29051646 29051925 -155236737 - AluSp SINE Alu -33 280 1 1374 254 71 88 chr4 29051925 29052460 -155236202 - L2 LINE L2 -483 2830 2311 1270 181 43 47 chr4 29052565 29052864 -155235798 + PABL_B LTR ERV1 370 667 0 972 247 28 48 chr4 29052881 29053172 -155235490 + PABL_B-int LTR ERV1 28 312 -6810 3706 62 18 0 chr4 29053172 29053607 -155235055 + MLT2A1 LTR ERVL 2 444 0 1856 268 64 13 chr4 29053727 29054479 -155234183 + PABL_B-int LTR ERV1 490 1369 -5753 * 7386 232 6 4 chr4 29054477 29055850 -155232812 + PABL_B-int LTR ERV1 2690 4065 -3057 3194 231 40 13 chr4 29055843 29056549 -155232113 + PABL_B-int LTR ERV1 4926 5650 -1472 * 14813 100 25 23 chr4 29056659 29058946 -155229716 - HERVH LTR ERV1 -5421 2292 1 3700 58 0 7 chr4 29058948 29059399 -155229263 - LTR7 LTR ERV1 -2 448 1 801 71 0 0 chr4 29059399 29059498 -155229164 + AluSg/x SINE Alu 202 300 -9 331 256 12 0 chr4 29059503 29059589 -155229073 - MLT1K LTR MaLR -128 460 374 458 305 52 6 chr4 29059685 29059859 -155228803 - MLT1K LTR MaLR -353 235 54 433 237 91 71 chr4 29059861 29059989 -155228673 + MIR SINE MIR 59 194 -68 1978 151 44 41 chr4 29059989 29060353 -155228309 - MLT1A1 LTR MaLR 0 365 1 433 237 91 71 chr4 29060353 29060422 -155228240 + MIR SINE MIR 194 260 -2 872 291 66 40 chr4 29060555 29061511 -155227151 - L1ME LINE L1 -676 5486 4498 * 1468 260 116 61 chr4 29061506 29062565 -155226097 - L1MC5 LINE L1 -286 7675 6554 2417 64 10 0 chr4 29062889 29063186 -155225476 - AluY SINE Alu -11 300 1 266 283 30 24 chr4 29063265 29063431 -155225231 + L1M4 LINE L1 4576 4742 -1404 702 268 47 19 chr4 29063453 29063828 -155224834 + L1MEc LINE L1 177 728 -5835 1501 206 60 33 chr4 29063828 29064192 -155224470 - MLT1A2 LTR MaLR 0 374 1 702 268 47 19 chr4 29064192 29064335 -155224327 + L1MEc LINE L1 728 866 -5697 3191 262 15 15 chr4 29064339 29065080 -155223582 + L1M3c LINE L1 13 753 -5388 1101 217 45 4 chr4 29065082 29065271 -155223391 + L1M3c LINE L1 837 1040 -5101 203 0 0 36 chr4 29065271 29065299 -155223363 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1101 217 45 4 chr4 29065299 29065353 -155223309 + L1M3c LINE L1 1040 1090 -5051 1506 101 19 0 chr4 29065406 29065613 -155223049 + Harlequin LTR ERV1 5883 6093 -803 873 205 103 13 chr4 29065948 29066182 -155222480 - LTR16C LTR ERVL -2 489 235 390 258 77 66 chr4 29067042 29067224 -155221438 - L2 LINE L2 -184 3129 2946 2460 202 66 0 chr4 29067279 29067749 -155220913 - MLT1D LTR MaLR -4 501 1 313 293 29 68 chr4 29068071 29068351 -155220311 + L1MC5 LINE L1 7639 7907 -54 269 199 78 21 chr4 29068435 29068558 -155220104 + L1ME LINE L1 5375 5513 -649 521 208 50 0 chr4 29068979 29069080 -155219582 + MER58A DNA MER1_type 1 106 -1 442 257 25 114 chr4 29069769 29069971 -155218691 - MIR SINE MIR -18 244 61 241 274 164 20 chr4 29069988 29070134 -155218528 - MIR SINE MIR -87 175 9 2206 101 17 0 chr4 29070575 29070873 -155217789 - AluSx SINE Alu -9 303 1 913 263 9 0 chr4 29070978 29071206 -155217456 - L1M1 LINE L1 -4465 3100 2871 1369 231 25 18 chr4 29071250 29071832 -155216830 + L1MEc LINE L1 2025 2614 -3768 * 5725 155 44 47 chr4 29071820 29072170 -155216492 + L1MA9 LINE L1 4266 4616 -1696 1952 142 72 31 chr4 29072170 29072530 -155216132 - THE1C LTR MaLR 0 375 1 5725 155 44 47 chr4 29072530 29073181 -155215481 + L1MA9 LINE L1 4616 5267 -1045 2155 150 32 41 chr4 29073181 29073521 -155215141 + MER1B DNA MER1_type 1 337 0 5725 155 44 47 chr4 29073521 29074565 -155214097 + L1MA9 LINE L1 5267 6311 -1 630 240 41 27 chr4 29074566 29074787 -155213875 + L1MEc LINE L1 811 1034 -5362 2089 137 7 3 chr4 29074882 29075182 -155213480 + AluSx SINE Alu 1 301 -11 476 273 13 32 chr4 29075796 29075950 -155212712 + MER115 DNA AcHobo 1 151 -542 233 278 19 0 chr4 29076019 29076073 -155212589 + Zaphod DNA AcHobo 3977 4031 0 365 293 98 0 chr4 29076239 29076263 -155212399 + L2 LINE L2 1778 1798 -1516 1945 180 26 0 chr4 29076263 29076602 -155212060 + MER7A DNA MER2_type 1 346 0 365 293 98 0 chr4 29076602 29076710 -155211952 + L2 LINE L2 1798 1923 -1391 1534 270 87 26 chr4 29076714 29077206 -155211456 - MLT1E2 LTR MaLR 0 626 105 236 211 367 0 chr4 29077364 29077454 -155211208 - MIR SINE MIR -114 148 26 280 270 63 48 chr4 29077461 29077587 -155211075 + MER5B DNA MER1_type 1 128 -50 23 0 0 0 chr4 29077752 29077775 -155210887 + AT_rich Low_complexity Low_complexity 1 23 0 256 283 83 42 chr4 29078250 29078370 -155210292 + MIR SINE MIR 73 197 -65 833 199 110 22 chr4 29078685 29079030 -155209632 - MLT1I LTR MaLR -3 406 1 314 201 8 149 chr4 29080092 29080192 -155208470 + L1MEd LINE L1 4 82 -6037 2658 25 0 29 chr4 29080192 29080508 -155208154 - AluY SINE Alu -3 308 2 314 201 8 149 chr4 29080508 29080541 -155208121 + L1MEd LINE L1 82 118 -6001 254 239 0 0 chr4 29080643 29080689 -155207973 + L1MEd LINE L1 311 356 -5763 2083 105 11 0 chr4 29081304 29081611 -155207051 + AluSx SINE Alu 1 310 0 268 294 109 8 chr4 29081667 29081786 -155206876 + MIR3 SINE MIR 75 205 -3 1535 168 117 7 chr4 29083562 29083836 -155204826 + 7SLRNA srpRNA srpRNA 2 305 -15 214 156 31 0 chr4 29083836 29083900 -155204762 + (TA)n Simple_repeat Simple_repeat 1 66 0 267 299 175 32 chr4 29084415 29084632 -155204030 - MIR SINE MIR -12 250 3 975 230 106 63 chr4 29084752 29084785 -155203877 - L1MC4a LINE L1 -1972 5836 5806 4070 137 73 21 chr4 29084785 29084867 -155203795 - L1PA15 LINE L1 -7 6158 6082 1828 125 17 21 chr4 29084867 29085154 -155203508 - AluSx SINE Alu -6 306 21 4070 137 73 21 chr4 29085154 29085784 -155202878 - L1PA15 LINE L1 -83 6082 5409 975 230 106 63 chr4 29085784 29086224 -155202438 - L1MC4a LINE L1 -2002 5806 5343 288 268 45 36 chr4 29086247 29086359 -155202303 - HsTC2 DNA Tc2 -1781 117 5 260 242 158 17 chr4 29086363 29086483 -155202179 - L1PA15 LINE L1 -801 5345 5209 215 170 21 0 chr4 29086782 29086829 -155201833 + (TA)n Simple_repeat Simple_repeat 2 49 0 717 236 27 0 chr4 29087130 29087278 -155201384 - MER5A DNA MER1_type -1 188 37 204 40 0 0 chr4 29087622 29087647 -155201015 + (T)n Simple_repeat Simple_repeat 1 25 0 1232 216 46 56 chr4 29087648 29088041 -155200621 - MLT1C LTR MaLR -45 422 34 222 333 111 22 chr4 29088107 29088287 -155200375 + MIR3 SINE MIR 6 201 -7 1476 239 75 41 chr4 29088774 29089335 -155199327 + HsTC2c DNA Tc2 104 683 -46 23 54 0 0 chr4 29091871 29091908 -155196754 + AT_rich Low_complexity Low_complexity 1 37 0 293 87 0 0 chr4 29092790 29092836 -155195826 - Alu SINE Alu -5 296 251 5364 135 99 44 chr4 29093034 29093959 -155194703 + Tigger3b DNA MER2_type 2 1006 -2022 2458 74 3 3 chr4 29093959 29094270 -155194392 - AluSp SINE Alu -1 312 2 5364 135 99 44 chr4 29094270 29094510 -155194152 + Tigger3b DNA MER2_type 1006 1231 0 24 53 0 0 chr4 29096590 29096628 -155192034 + AT_rich Low_complexity Low_complexity 1 38 0 1634 191 14 7 chr4 29097900 29098183 -155190479 - AluJb SINE Alu -27 285 1 1333 195 66 35 chr4 29101404 29101826 -155186836 - Tigger7 DNA MER2_type -1980 507 2 28 61 0 0 chr4 29103696 29103745 -155184917 + AT_rich Low_complexity Low_complexity 1 49 0 437 272 129 37 chr4 29105991 29106285 -155182377 + L1ME4a LINE L1 5534 5854 -267 362 301 0 0 chr4 29110253 29110346 -155178316 - MER58 DNA MER1_type -122 93 1 1768 129 10 54 chr4 29110919 29111214 -155177448 + AluJo SINE Alu 1 282 -30 26 0 0 0 chr4 29111237 29111263 -155177399 + AT_rich Low_complexity Low_complexity 1 26 0 201 39 0 0 chr4 29111333 29111359 -155177303 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 21 0 0 0 chr4 29112850 29112871 -155175791 + AT_rich Low_complexity Low_complexity 1 21 0 2407 81 0 7 chr4 29114189 29114499 -155174163 - AluY SINE Alu -3 308 1 490 366 148 16 chr4 29114977 29115463 -155173199 - L3 LINE CR1 -98 1479 930 325 226 165 23 chr4 29115954 29115969 -155172693 - L1MA10 LINE L1 -2 6332 6318 640 213 136 6 chr4 29115969 29116138 -155172524 - L1ME1 LINE L1 -5 6161 5971 763 213 124 16 chr4 29116139 29116397 -155172265 - L1ME1 LINE L1 -250 5916 5631 260 53 26 0 chr4 29117570 29117590 -155171072 + (CA)n Simple_repeat Simple_repeat 1 59 0 260 53 26 0 chr4 29117590 29117628 -155171034 + (CA)n Simple_repeat Simple_repeat 1 39 0 257 128 21 0 chr4 29117732 29117779 -155170883 + (CA)n Simple_repeat Simple_repeat 1 48 0 282 56 0 0 chr4 29117845 29117881 -155170781 + (CGG)n Simple_repeat Simple_repeat 2 37 0 21 57 0 0 chr4 29118520 29118555 -155170107 + GC_rich Low_complexity Low_complexity 1 35 0 291 177 0 0 chr4 29119163 29119225 -155169437 + (TG)n Simple_repeat Simple_repeat 1 62 0 329 264 42 139 chr4 29119318 29119534 -155169128 + L1M2 LINE L1 818 1012 -5837 435 63 0 0 chr4 29120205 29120268 -155168394 + (TG)n Simple_repeat Simple_repeat 2 64 0 677 196 53 151 chr4 29122232 29122518 -155166144 + PABL_B-int LTR ERV1 4787 5015 0 233 337 30 56 chr4 29122681 29122951 -155165711 - PABL_B LTR ERV1 -401 266 4 657 138 0 0 chr4 29122955 29123064 -155165598 + L1MB3 LINE L1 1233 1341 -5043 * 1791 166 18 21 chr4 29123061 29123536 -155165126 + L1MB3 LINE L1 5373 5851 -568 803 223 87 27 chr4 29123539 29123888 -155164774 - MSTD LTR MaLR 0 396 2 3081 138 16 30 chr4 29123888 29124119 -155164543 + L1MB3 LINE L1 5849 6082 -337 1523 128 0 17 chr4 29124119 29124353 -155164309 + MER30 DNA MER1_type 1 230 0 3081 138 16 30 chr4 29124353 29124692 -155163970 + L1MB3 LINE L1 6082 6411 -8 1948 298 38 47 chr4 29124716 29125476 -155163186 + HERV16 LTR ERVL 2300 3110 -2263 2523 68 0 0 chr4 29125476 29125786 -155162876 - AluY SINE Alu 0 311 2 1948 298 38 47 chr4 29125786 29126141 -155162521 + HERV16 LTR ERVL 3110 3467 -1906 546 302 40 20 chr4 29126281 29126483 -155162179 - MER63A DNA MER1_type -4 206 1 341 267 78 71 chr4 29126654 29126950 -155161712 + HERV16 LTR ERVL 3746 4043 -1721 402 363 0 0 chr4 29127224 29127384 -155161278 + HERV16 LTR ERVL 4671 4830 -824 2066 155 0 0 chr4 29127434 29127743 -155160919 - AluSc SINE Alu 0 309 1 312 252 21 49 chr4 29127848 29127991 -155160671 + HERV16 LTR ERVL 4534 4672 -324 1897 111 36 18 chr4 29128323 29128708 -155159954 + AluSp SINE Alu 1 390 0 1345 284 43 19 chr4 29128753 29129032 -155159630 + LTR16A LTR ERVL 19 313 -137 1915 107 21 7 chr4 29129032 29129312 -155159350 + AluSp SINE Alu 1 284 -29 1345 284 43 19 chr4 29129312 29129454 -155159208 + LTR16A LTR ERVL 313 450 0 2223 124 7 0 chr4 29129539 29129846 -155158816 + AluSx SINE Alu 1 309 -3 675 274 30 25 chr4 29129859 29130056 -155158606 - L2 LINE L2 -2 3311 3114 882 263 72 36 chr4 29130229 29130674 -155157988 - LTR16C LTR ERVL -30 461 1 235 220 34 0 chr4 29130679 29130738 -155157924 - MIR SINE MIR -65 197 137 811 252 49 56 chr4 29130771 29131239 -155157423 + MLT1K LTR MaLR 5 544 -44 345 289 18 35 chr4 29131249 29131363 -155157299 - MIR SINE MIR -150 112 1 2128 124 6 40 chr4 29131660 29132099 -155156563 + AluSx SINE Alu 1 428 0 717 53 0 0 chr4 29132099 29132193 -155156469 + (GGGAA)n Simple_repeat Simple_repeat 1 94 0 666 214 139 75 chr4 29132269 29132550 -155156112 - MLT1K LTR MaLR 0 588 290 249 33 0 0 chr4 29132585 29132615 -155156047 + (TCCC)n Simple_repeat Simple_repeat 3 32 0 559 284 44 78 chr4 29132615 29132911 -155155751 - MLT1K LTR MaLR -302 286 1 23 0 0 0 chr4 29133030 29133053 -155155609 + AT_rich Low_complexity Low_complexity 1 23 0 357 262 156 0 chr4 29133078 29133200 -155155462 - LTR67 LTR ERVL -12 545 405 199 297 102 34 chr4 29133643 29133761 -155154901 + L3 LINE CR1 1055 1180 -397 343 336 132 14 chr4 29133821 29134041 -155154621 + L2 LINE L2 2550 2795 -519 213 267 38 120 chr4 29134126 29134449 -155154213 + L2 LINE L2 2796 3109 -163 417 153 0 0 chr4 29134946 29135018 -155153644 + (TG)n Simple_repeat Simple_repeat 1 72 0 322 299 14 48 chr4 29135779 29135926 -155152736 - MER5A DNA MER1_type -39 150 9 301 288 96 8 chr4 29135946 29136071 -155152591 + MIR SINE MIR 27 162 -100 25 0 0 0 chr4 29136251 29136276 -155152386 + AT_rich Low_complexity Low_complexity 1 25 0 208 250 16 31 chr4 29136327 29136391 -155152271 + GA-rich Low_complexity Low_complexity 2 64 0 1880 148 0 40 chr4 29136405 29136709 -155151953 + AluSx SINE Alu 1 292 -20 2366 84 7 0 chr4 29136710 29137018 -155151644 + AluY SINE Alu 2 311 0 716 262 89 0 chr4 29137191 29137411 -155151251 - MIR SINE MIR 0 262 24 301 304 35 17 chr4 29137443 29137558 -155151104 - L1ME4a LINE L1 -207 5914 5798 294 221 71 22 chr4 29137564 29137692 -155150970 - MIR SINE MIR -107 155 19 257 329 131 47 chr4 29137703 29138001 -155150661 - L2 LINE L2 -23 3290 2968 269 273 186 11 chr4 29138103 29138286 -155150376 + MIR SINE MIR 1 215 -47 1988 127 0 19 chr4 29138379 29138686 -155149976 + AluSx SINE Alu 3 303 -9 247 213 0 0 chr4 29139094 29139141 -155149521 - MIR SINE MIR -111 151 105 217 241 46 46 chr4 29139219 29139306 -155149356 + L2 LINE L2 2950 3036 -236 566 354 13 9 chr4 29139411 29139640 -155149022 + MIR SINE MIR 4 233 -29 286 232 207 12 chr4 29139796 29139878 -155148784 - MIR SINE MIR -109 153 56 23 0 0 0 chr4 29140481 29140504 -155148158 + AT_rich Low_complexity Low_complexity 1 23 0 242 279 16 0 chr4 29140952 29141013 -155147649 + L2 LINE L2 3205 3266 -6 589 305 62 26 chr4 29141057 29141283 -155147379 + MIR SINE MIR 15 248 -14 288 0 0 0 chr4 29192131 29192163 -155096499 + (CA)n Simple_repeat Simple_repeat 2 33 0 484 282 31 18 chr4 29192346 29192509 -155096153 + MIR3 SINE MIR 44 208 0 673 247 58 50 chr4 29193158 29193417 -155095245 - MLT1L LTR MaLR -348 267 7 212 269 19 0 chr4 29193453 29193505 -155095157 + GA-rich Low_complexity Low_complexity 4 56 0 498 336 77 6 chr4 29193505 29193741 -155094921 + MIR SINE MIR 4 254 -8 232 287 99 20 chr4 29194168 29194269 -155094393 - L2 LINE L2 -8 3305 3197 188 222 0 0 chr4 29194399 29194435 -155094227 + L3 LINE CR1 1519 1554 -23 405 0 0 0 chr4 29194620 29194665 -155093997 + (TGAG)n Simple_repeat Simple_repeat 2 46 0 420 256 33 16 chr4 29196123 29196244 -155092418 + L2 LINE L2 3184 3306 -7 2178 109 3 28 chr4 29196369 29196689 -155091973 + AluJb SINE Alu 1 312 0 420 289 47 27 chr4 29196713 29196862 -155091800 - L2 LINE L2 0 3313 3162 1144 226 63 47 chr4 29196993 29197373 -155091289 - MLT1J1 LTR MaLR 0 446 61 601 207 0 9 chr4 29197912 29198023 -155090639 - MER20 DNA MER1_type -1 218 109 1104 206 32 36 chr4 29198033 29198286 -155090376 - THE1C LTR MaLR -50 325 74 581 194 16 48 chr4 29198280 29198404 -155090258 - MER20 DNA MER1_type -99 120 1 * 360 64 0 0 chr4 29199716 29199763 -155088899 + (TTCC)n Simple_repeat Simple_repeat 2 48 0 2173 116 10 0 chr4 29199764 29200074 -155088588 - AluSq SINE Alu 0 313 1 584 268 69 27 chr4 29200193 29200454 -155088208 - L1ME4a LINE L1 -69 6052 5781 559 265 38 27 chr4 29200475 29200660 -155088002 - MIR SINE MIR -27 235 49 570 296 20 5 chr4 29200716 29200912 -155087750 - L1ME4a LINE L1 -347 5774 5576 273 256 50 59 chr4 29201872 29202091 -155086571 - L1MC4 LINE L1 0 8042 7826 1021 217 92 40 chr4 29202115 29202442 -155086220 - L1ME2 LINE L1 -14 6150 5807 350 335 31 6 chr4 29202448 29202609 -155086053 + MLT1L LTR MaLR 451 615 0 552 65 0 0 chr4 29203600 29203677 -155084985 + (TTCC)n Simple_repeat Simple_repeat 4 80 0 2128 144 3 0 chr4 29203698 29204004 -155084658 - AluSx SINE Alu -5 307 1 472 226 66 0 chr4 29204059 29204165 -155084497 - L2 LINE L2 0 3313 3201 711 264 102 25 chr4 29204172 29204456 -155084206 + MLT1G1 LTR MaLR 7 312 -283 530 188 165 18 chr4 29204502 29204672 -155083990 + MLT1G1 LTR MaLR 394 588 -2 825 318 89 25 chr4 29204813 29205273 -155083389 - L2 LINE L2 -260 3053 2558 632 249 143 9 chr4 29205295 29205512 -155083150 - MIR SINE MIR 0 262 17 250 290 37 86 chr4 29205561 29205617 -155083045 - L2 LINE L2 -805 2509 2452 965 129 34 0 chr4 29205617 29205764 -155082898 + L1MA5A LINE L1 6144 6295 -2 250 290 37 86 chr4 29205764 29205869 -155082793 - L2 LINE L2 -862 2452 2356 632 291 69 14 chr4 29205928 29206154 -155082508 - MIR SINE MIR -7 255 14 220 280 0 0 chr4 29206186 29206236 -155082426 + MIR SINE MIR 213 262 0 342 249 230 0 chr4 29206988 29207153 -155081509 - L1ME4a LINE L1 -38 6083 5881 701 264 132 14 chr4 29207359 29207579 -155081083 + MIR SINE MIR 17 262 0 1829 154 0 11 chr4 29207679 29207964 -155080698 + AluJb SINE Alu 1 282 -30 314 314 95 69 chr4 29209155 29209429 -155079233 - L2 LINE L2 -2 3270 2990 521 248 0 129 chr4 29210064 29210274 -155078388 + LTR67 LTR ERVL 3 185 -372 437 239 12 12 chr4 29210293 29210460 -155078202 + CT-rich Low_complexity Low_complexity 3 169 0 217 233 0 0 chr4 29210475 29210518 -155078144 + CT-rich Low_complexity Low_complexity 1 43 0 356 203 0 0 chr4 29210709 29210778 -155077884 - FLAM_A SINE Alu 0 133 65 549 204 99 28 chr4 29210837 29210979 -155077683 - L1MD2 LINE L1 -10 6743 6592 3508 221 49 25 chr4 29210981 29212155 -155076507 - L1MD2 LINE L1 -214 6539 5343 2221 78 0 0 chr4 29212155 29212425 -155076237 - AluSc SINE Alu -6 303 34 3508 221 49 25 chr4 29212425 29212544 -155076118 - L1MD2 LINE L1 -1410 5343 5228 1251 251 36 8 chr4 29212541 29212927 -155075735 - L1MD2 LINE L1 -2781 3759 3363 * 2038 186 14 0 chr4 29212949 29213309 -155075353 + MLT1B LTR MaLR 26 390 0 467 113 0 0 chr4 29213333 29213395 -155075267 - AluS SINE Alu -242 68 7 1499 123 9 0 chr4 29213395 29213606 -155075056 + AluSg/x SINE Alu 85 297 -15 9392 213 87 43 chr4 29213606 29214247 -155074415 - L1MD2 LINE L1 -3300 3240 2629 2189 114 10 0 chr4 29214247 29214544 -155074118 - AluSc SINE Alu -7 302 3 9392 213 87 43 chr4 29214544 29215296 -155073366 - L1MD2 LINE L1 -3911 2629 1912 593 168 72 48 chr4 29215296 29215421 -155073241 + FLAM_C SINE Alu 1 128 -5 9392 213 87 43 chr4 29215421 29216737 -155071925 - L1MD2 LINE L1 -4628 1912 364 279 0 0 0 chr4 29216737 29216768 -155071894 + (TG)n Simple_repeat Simple_repeat 1 31 0 9392 213 87 43 chr4 29216768 29217129 -155071533 - L1MD2 LINE L1 -6176 364 20 279 215 38 13 chr4 29217138 29217217 -155071445 + LTR67 LTR ERVL 477 557 0 3231 132 40 8 chr4 29217308 29217456 -155071206 - L1MA9 LINE L1 0 7272 7130 180 97 0 0 chr4 29217456 29217487 -155071175 + (TG)n Simple_repeat Simple_repeat 2 32 0 3231 132 40 8 chr4 29217487 29217839 -155070823 - L1MA9 LINE L1 -142 7130 6756 297 123 0 62 chr4 29217881 29217946 -155070716 - L1MA9 LINE L1 -1850 5256 5196 3241 240 70 62 chr4 29217949 29219903 -155068759 - L1MA9 LINE L1 -3360 3746 2146 2089 134 0 13 chr4 29219903 29220216 -155068446 - AluSq SINE Alu -3 310 2 3241 240 70 62 chr4 29220216 29221187 -155067475 - L1MA9 LINE L1 -4960 2146 1184 1526 249 21 21 chr4 29221303 29221677 -155066985 + MLT1A2 LTR MaLR 1 374 0 2846 115 38 35 chr4 29222152 29222195 -155066467 - MSTA LTR MaLR 0 428 387 2285 105 20 0 chr4 29222195 29222499 -155066163 + AluSg SINE Alu 1 310 0 2846 115 38 35 chr4 29222499 29222882 -155065780 - MSTA LTR MaLR -41 387 1 1084 252 5 3 chr4 29224646 29224895 -155063767 + MIR SINE MIR 15 257 -5 1866 128 39 0 chr4 29226446 29226727 -155061935 + AluSx SINE Alu 1 292 -20 270 289 82 23 chr4 29226742 29226887 -155061775 - MIR SINE MIR -62 146 10 230 211 14 42 chr4 29227847 29227918 -155060744 + MLT1L LTR MaLR 327 395 -220 22 70 0 0 chr4 29228038 29228081 -155060581 + AT_rich Low_complexity Low_complexity 1 43 0 2434 102 0 0 chr4 29228384 29228697 -155059965 - AluSq SINE Alu 0 313 1 480 283 81 6 chr4 29229351 29229524 -155059138 + MIR SINE MIR 65 250 -12 360 223 112 99 chr4 29229988 29230221 -155058441 + L2 LINE L2 3074 3309 -4 2065 151 0 3 chr4 29230262 29230567 -155058095 - AluJb SINE Alu -8 304 1 917 255 56 40 chr4 29230750 29231052 -155057610 + MLT1I LTR MaLR 95 401 -8 357 150 0 0 chr4 29231203 29231263 -155057399 - FLAM SINE Alu -2 131 72 2197 119 0 0 chr4 29232617 29232920 -155055742 - AluSx SINE Alu -9 303 1 2570 124 2 100 chr4 29233002 29233461 -155055201 + MLT2D LTR ERVL 1 414 0 234 333 56 11 chr4 29233562 29233652 -155055010 - MIR SINE MIR -69 139 46 360 286 163 25 chr4 29235107 29235310 -155053352 + MIR SINE MIR 30 260 -2 1174 205 67 0 chr4 29235494 29235704 -155052958 + MER58A DNA MER1_type 1 224 0 220 253 165 44 chr4 29236296 29236387 -155052275 - L2 LINE L2 -30 3242 3141 525 264 103 94 chr4 29236653 29237069 -155051593 - MER115 DNA AcHobo -245 448 29 2305 101 0 3 chr4 29237240 29237547 -155051115 + AluSg1 SINE Alu 1 306 -3 197 65 32 0 chr4 29237942 29237973 -155050689 + (TG)n Simple_repeat Simple_repeat 1 32 0 2483 236 28 8 chr4 29238834 29239342 -155049320 + LTR53 LTR ERVL 2 519 0 395 286 95 20 chr4 29239345 29239492 -155049170 + MIR SINE MIR 35 192 -70 2293 116 0 0 chr4 29239511 29239813 -155048849 - AluSq SINE Alu -11 302 1 793 268 72 41 chr4 29239813 29240231 -155048431 - L2 LINE L2 -6 3307 2877 2227 128 128 28 chr4 29240247 29240413 -155048249 + MSTA LTR MaLR 1 149 -279 1996 108 0 14 chr4 29240413 29240692 -155047970 + AluY SINE Alu 20 294 -17 2227 128 128 28 chr4 29240692 29240914 -155047748 + MSTA LTR MaLR 149 428 0 6078 158 6 44 chr4 29240916 29242004 -155046658 + MSTA-int LTR MaLR 3 1048 -532 240 83 21 62 chr4 29242005 29242053 -155046609 + MSTA-int LTR MaLR 1535 1580 0 2259 139 131 11 chr4 29242062 29242444 -155046218 + MSTA LTR MaLR 1 428 0 2251 121 3 0 chr4 29242807 29243113 -155045549 - AluSp SINE Alu -6 307 1 417 258 11 108 chr4 29243185 29243371 -155045291 + MIR SINE MIR 44 211 -51 359 215 103 89 chr4 29243644 29244028 -155044634 - L1ME4a LINE L1 -12 6109 5685 864 235 97 5 chr4 29244148 29244344 -155044318 + MER58A DNA MER1_type 1 214 -10 33 73 0 0 chr4 29244442 29244510 -155044152 + AT_rich Low_complexity Low_complexity 1 68 0 1440 183 105 68 chr4 29244832 29244975 -155043687 - Charlie4a DNA MER1_type -1485 476 340 2201 119 60 9 chr4 29244975 29245311 -155043351 + THE1A LTR MaLR 1 353 -2 1440 183 105 68 chr4 29245311 29245625 -155043037 - Charlie4a DNA MER1_type -1621 340 2 503 301 66 48 chr4 29245767 29246041 -155042621 + L1ME LINE L1 5209 5489 -672 1755 180 24 7 chr4 29246041 29246336 -155042326 + AluJb SINE Alu 1 300 -12 503 301 66 48 chr4 29246336 29246567 -155042095 + L1ME LINE L1 5489 5714 -447 3096 194 20 7 chr4 29246820 29247372 -155041290 + MER89 LTR ERV1 1 559 0 2126 107 24 13 chr4 29247564 29247862 -155040800 + AluSq SINE Alu 1 301 -12 407 269 126 47 chr4 29248987 29249288 -155039374 + L2 LINE L2 2988 3312 -1 2015 156 13 50 chr4 29249523 29249763 -155038899 - MLT1A1 LTR MaLR 0 365 143 2554 119 31 19 chr4 29249763 29250123 -155038539 + THE1B LTR MaLR 1 364 0 2015 156 13 50 chr4 29250123 29250261 -155038401 - MLT1A1 LTR MaLR -222 143 1 1017 104 0 0 chr4 29250340 29250474 -155038188 - AluSg/x SINE Alu -21 291 158 2220 111 7 0 chr4 29250895 29251192 -155037470 - AluSq SINE Alu -14 299 1 203 247 140 11 chr4 29251252 29251345 -155037317 - MIR SINE MIR -50 212 108 226 341 62 8 chr4 29252097 29252226 -155036436 + MIR3 SINE MIR 12 147 -61 394 323 79 0 chr4 29252377 29252541 -155036121 + MIR SINE MIR 14 190 -72 334 73 0 0 chr4 29253361 29253402 -155035260 - MLT2C1 LTR ERVL 0 397 357 360 0 0 0 chr4 29253405 29253445 -155035217 + (TG)n Simple_repeat Simple_repeat 2 41 0 3058 101 14 20 chr4 29253446 29253884 -155034778 - MLT2A1 LTR ERVL -8 436 2 201 39 0 0 chr4 29253886 29253912 -155034750 + (TG)n Simple_repeat Simple_repeat 1 26 0 225 0 0 0 chr4 29253912 29253937 -155034725 + (GA)n Simple_repeat Simple_repeat 1 25 0 1619 230 27 66 chr4 29253939 29254422 -155034240 - MLT2B1 LTR ERVL -56 464 1 2327 187 65 16 chr4 29254445 29254888 -155033774 + MLT1C LTR MaLR 3 467 0 673 265 91 16 chr4 29254889 29255142 -155033520 + MLT1L LTR MaLR 340 611 -4 385 319 29 14 chr4 29255615 29255753 -155032909 + L2 LINE L2 2916 3055 -217 244 314 97 24 chr4 29255849 29255973 -155032689 + MIR3 SINE MIR 25 157 -51 288 276 60 26 chr4 29256940 29257056 -155031606 + MER5B DNA MER1_type 1 120 -58 395 339 18 9 chr4 29257056 29257168 -155031494 + L2 LINE L2 3158 3270 -2 324 322 89 7 chr4 29257211 29257357 -155031305 + MIR SINE MIR 96 253 -9 724 248 209 27 chr4 29257429 29257760 -155030902 - MLT1I LTR MaLR 0 409 19 2246 125 0 3 chr4 29257928 29258241 -155030421 - AluSx SINE Alu 0 312 1 1022 266 57 3 chr4 29258278 29258594 -155030068 - L1MB7 LINE L1 -10 6672 6340 861 254 29 25 chr4 29258597 29258841 -155029821 - LTR55 LTR ERV -5 543 299 6713 239 45 30 chr4 29258846 29262098 -155026564 - L1MB7 LINE L1 -1443 5201 524 309 287 84 38 chr4 29262270 29262531 -155026131 - L1MB7 LINE L1 -6257 285 13 425 246 16 16 chr4 29262819 29262945 -155025717 + LTR67 LTR ERVL 432 557 0 739 313 79 63 chr4 29263459 29263964 -155024698 + L3 LINE CR1 859 1371 -206 509 353 60 6 chr4 29264623 29264790 -155023872 - MER91A DNA MER1_type 0 196 21 189 292 112 34 chr4 29264944 29265033 -155023629 + L3 LINE CR1 1370 1465 -112 634 212 192 0 chr4 29265133 29265284 -155023378 - MER5A DNA MER1_type -2 187 8 555 183 242 26 chr4 29265294 29265447 -155023215 - MER5A DNA MER1_type 0 189 4 414 302 48 0 chr4 29265551 29265677 -155022985 - L2 LINE L2 0 3313 3182 497 258 66 13 chr4 29266156 29266345 -155022317 + MIR SINE MIR 4 204 -58 454 326 44 0 chr4 29266711 29266892 -155021770 + L1ME LINE L1 5476 5664 -457 1639 174 0 47 chr4 29267051 29267368 -155021294 + AluJb SINE Alu 1 302 -10 1446 67 114 0 chr4 29267403 29267596 -155021066 - AluY SINE Alu -16 295 81 1049 259 65 45 chr4 29267602 29268092 -155020570 - MLT1G LTR MaLR -76 479 1 281 270 232 27 chr4 29268106 29268369 -155020293 - MLT1H1-int LTR MaLR -30 1705 1028 237 386 74 0 chr4 29268629 29268805 -155019857 - MLT1H1-int LTR MaLR -477 894 706 545 314 18 9 chr4 29269159 29269388 -155019274 - MLT1H1-int LTR MaLR -847 524 294 1506 231 80 76 chr4 29269527 29270078 -155018584 - MLT1H1 LTR MaLR -2 553 1 1941 172 28 46 chr4 29270844 29271239 -155017423 + MLT1B LTR MaLR 1 388 -2 550 207 9 9 chr4 29271244 29271355 -155017307 - L1MC4a LINE L1 -931 6877 6767 372 216 0 0 chr4 29271355 29271429 -155017233 + MLT1D LTR MaLR 1 74 -431 489 279 71 26 chr4 29272432 29272586 -155016076 + MIR SINE MIR 9 169 -93 421 201 15 0 chr4 29275263 29275371 -155013291 + MLT2C2 LTR ERVL 1 72 -342 2168 39 0 16 chr4 29276681 29276939 -155011723 - AluY SINE Alu -13 298 45 1057 214 68 65 chr4 29276975 29277311 -155011351 + MLT2C2 LTR ERVL 59 395 -69 250 149 0 43 chr4 29277270 29277317 -155011345 + MSTD LTR MaLR 288 332 -64 * 220 143 36 18 chr4 29277327 29277383 -155011279 + (CATATA)n Simple_repeat Simple_repeat 1 57 0 226 286 0 22 chr4 29277385 29277476 -155011186 + L1MC4 LINE L1 6614 6702 -1340 * 255 255 0 43 chr4 29277417 29277511 -155011151 - L1MC4 LINE L1 -1339 6703 6614 246 281 73 0 chr4 29277477 29277559 -155011103 + L1MC4 LINE L1 6616 6703 -1339 * 180 176 0 0 chr4 29277560 29277594 -155011068 + (CATATA)n Simple_repeat Simple_repeat 3 36 0 180 152 0 0 chr4 29277615 29277648 -155011014 + (CA)n Simple_repeat Simple_repeat 2 34 0 784 182 7 39 chr4 29277729 29277786 -155010876 - MER5B DNA MER1_type -6 172 115 2165 112 3 0 chr4 29277786 29278106 -155010556 + AluSp SINE Alu 1 321 0 784 182 7 39 chr4 29278106 29278201 -155010461 - MER5B DNA MER1_type -63 115 24 276 236 0 0 chr4 29278202 29278257 -155010405 + Tigger5 DNA MER2_type 1 55 -2268 273 288 0 0 chr4 29278225 29278298 -155010364 + Tigger5 DNA MER2_type 2250 2322 -1 * 244 175 0 0 chr4 29278301 29278341 -155010321 + Tigger5 DNA MER2_type 16 55 -2268 233 245 0 0 chr4 29278310 29278359 -155010303 + Tigger5 DNA MER2_type 2251 2299 -24 * 428 167 26 0 chr4 29278361 29278439 -155010223 + Tigger5 DNA MER2_type 2244 2323 0 886 267 17 31 chr4 29278940 29279137 -155009525 + L1MC4a LINE L1 5655 5848 -1960 590 284 98 16 chr4 29279137 29279331 -155009331 - MER63A DNA MER1_type 0 210 1 886 267 17 31 chr4 29279331 29279425 -155009237 + L1MC4a LINE L1 5848 5942 -1866 2639 185 52 12 chr4 29279446 29279964 -155008698 + L1MB5 LINE L1 5585 6123 -51 1846 154 7 3 chr4 29279964 29280262 -155008400 + AluJb SINE Alu 14 312 0 320 284 103 52 chr4 29280697 29280852 -155007810 + MIR SINE MIR 79 241 -21 436 236 230 6 chr4 29281106 29281280 -155007382 - MIR SINE MIR -13 249 37 438 254 227 22 chr4 29281361 29281546 -155007116 - L3 LINE CR1 -5 1572 1350 676 251 191 53 chr4 29282771 29283189 -155005473 + MLT1H1 LTR MaLR 78 553 -2 1831 209 30 24 chr4 29283244 29283613 -155005049 + MLT1A2 LTR MaLR 2 372 -2 444 261 218 38 chr4 29284688 29285150 -155003512 + MLT1L LTR MaLR 1 604 -11 180 111 0 0 chr4 29285387 29285414 -155003248 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 469 329 84 19 chr4 29286415 29286628 -155002034 + MLT1K LTR MaLR 54 280 -308 425 255 20 10 chr4 29286654 29286756 -155001906 + MLT1K LTR MaLR 486 588 0 249 276 112 37 chr4 29286957 29287091 -155001571 - MIR SINE MIR -17 245 102 595 181 188 0 chr4 29287422 29287560 -155001102 - L1ME1 LINE L1 -5 6161 5998 390 162 0 0 chr4 29287561 29287635 -155001027 + (CA)n Simple_repeat Simple_repeat 2 75 0 234 91 0 0 chr4 29287634 29287667 -155000995 + (TC)n Simple_repeat Simple_repeat 1 33 0 * 225 249 52 88 chr4 29287667 29287860 -155000802 - L1MC2 LINE L1 -316 6028 5843 * 5263 228 57 61 chr4 29287710 29289515 -154999147 - L1ME1 LINE L1 -169 5995 4185 1826 179 0 10 chr4 29289515 29289828 -154998834 - AluJb SINE Alu -2 310 1 5263 228 57 61 chr4 29289828 29289892 -154998770 - L1ME1 LINE L1 -1979 4185 4122 406 0 0 0 chr4 29289892 29289937 -154998725 + (TTTA)n Simple_repeat Simple_repeat 2 84 0 1986 108 29 11 chr4 29289937 29290215 -154998447 - AluSx SINE Alu -29 283 1 5263 228 57 61 chr4 29290215 29291813 -154996849 - L1ME1 LINE L1 -2041 4123 2510 2014 62 12 0 chr4 29291813 29292069 -154996593 - AluY SINE Alu -9 302 44 5263 228 57 61 chr4 29292069 29292392 -154996270 - L1ME1 LINE L1 -3654 2510 2187 2483 138 73 0 chr4 29292519 29292916 -154995746 - MSTB LTR MaLR 0 426 1 248 290 29 0 chr4 29292930 29292999 -154995663 + Charlie8 DNA MER1_type 2347 2417 0 1706 141 9 0 chr4 29293455 29293756 -154994906 - Tigger4(Zombi) DNA MER2_type 0 2731 38 199 312 116 29 chr4 29294585 29294723 -154993939 + MIR3 SINE MIR 31 180 -28 720 311 114 11 chr4 29294821 29295197 -154993465 - MLT1L LTR MaLR 0 615 201 1433 192 34 10 chr4 29295959 29296251 -154992411 - AluJo SINE Alu -13 299 1 492 369 22 9 chr4 29296925 29297147 -154991515 + MIR SINE MIR 3 227 -35 964 141 0 7 chr4 29297262 29297411 -154991251 - FAM SINE Alu -15 170 23 839 274 151 30 chr4 29297460 29297792 -154990870 - MLT1K LTR MaLR -189 399 28 231 324 176 17 chr4 29298429 29298605 -154990057 + L2 LINE L2 3107 3310 -3 387 338 35 10 chr4 29298828 29299029 -154989633 - MIR SINE MIR -1 261 56 183 156 0 0 chr4 29300332 29300364 -154988298 + CT-rich Low_complexity Low_complexity 2 33 0 1627 142 22 53 chr4 29300364 29300682 -154987980 - AluJb SINE Alu -4 308 1 206 237 34 0 chr4 29300795 29300854 -154987808 + L3 LINE CR1 1371 1431 -146 236 306 0 0 chr4 29301117 29301179 -154987483 - MIR SINE MIR -2 260 199 594 300 89 8 chr4 29301185 29301422 -154987240 + MIR SINE MIR 4 259 -3 443 231 7 61 chr4 29301373 29301520 -154987142 - MIR SINE MIR -21 241 103 * 232 378 14 0 chr4 29301593 29301667 -154986995 - MIR SINE MIR -186 76 2 229 333 111 19 chr4 29301818 29301926 -154986736 - MIR SINE MIR -117 145 28 282 139 13 51 chr4 29301960 29302039 -154986623 + CT-rich Low_complexity Low_complexity 4 79 0 378 214 83 0 chr4 29302044 29302128 -154986534 + MER5B DNA MER1_type 88 178 0 406 270 42 98 chr4 29302623 29302838 -154985824 + L2 LINE L2 2954 3156 -116 280 311 59 34 chr4 29302847 29302966 -154985696 - L2 LINE L2 -15 3298 3177 294 309 0 0 chr4 29303222 29303303 -154985359 + L2 LINE L2 3187 3267 -5 204 163 0 0 chr4 29304836 29304879 -154983783 + T-rich Low_complexity Low_complexity 1 43 0 226 293 95 41 chr4 29304990 29305137 -154983525 + MER5A DNA MER1_type 14 168 -21 285 253 0 0 chr4 29306141 29306224 -154982438 + A-rich Low_complexity Low_complexity 1 83 0 476 265 148 35 chr4 29306267 29306497 -154982165 + MIR SINE MIR 5 260 -2 341 326 57 7 chr4 29306534 29306675 -154981987 + L3 LINE CR1 1404 1551 -26 2295 86 13 0 chr4 29308139 29308441 -154980221 + AluSg SINE Alu 1 306 -4 212 289 0 26 chr4 29308898 29308974 -154979688 + GA-rich Low_complexity Low_complexity 1 74 0 571 273 157 73 chr4 29309501 29309967 -154978695 + MLT1L LTR MaLR 111 615 0 223 298 73 40 chr4 29313847 29313971 -154974691 + L2 LINE L2 2718 2845 -469 239 309 29 0 chr4 29314070 29314138 -154974524 - MIR SINE MIR -6 256 187 197 196 370 0 chr4 29314125 29314217 -154974445 + L2 LINE L2 3173 3298 -15 * 991 208 95 52 chr4 29314243 29314570 -154974092 - L1ME3A LINE L1 -13 6157 5817 463 295 80 8 chr4 29314612 29314849 -154973813 + L1MC/D LINE L1 5318 5571 -2237 273 265 15 0 chr4 29314879 29314947 -154973715 + L1MC/D LINE L1 5694 5762 -2046 1819 175 112 48 chr4 29315409 29315519 -154973143 - MLT1D LTR MaLR 0 505 403 2245 100 0 0 chr4 29315519 29315819 -154972843 + AluSx SINE Alu 1 300 -12 1819 175 112 48 chr4 29315819 29316183 -154972479 - MLT1D LTR MaLR -102 403 1 2379 135 22 0 chr4 29316553 29316909 -154971753 - THE1B LTR MaLR 0 364 1 1781 181 26 47 chr4 29316916 29317298 -154971364 + MLT1A2 LTR MaLR 1 374 0 351 0 0 0 chr4 29317418 29317457 -154971205 + (TA)n Simple_repeat Simple_repeat 2 40 0 644 216 130 0 chr4 29318429 29318590 -154970072 + MER5A DNA MER1_type 5 189 0 293 344 36 10 chr4 29318595 29318790 -154969872 + L2 LINE L2 2700 2899 -415 29 28 0 0 chr4 29319987 29320023 -154968639 + AT_rich Low_complexity Low_complexity 1 36 0 1744 136 7 14 chr4 29320023 29320310 -154968352 - AluJo SINE Alu -17 295 11 260 204 182 34 chr4 29321516 29321604 -154967058 - MLT1H LTR MaLR -44 505 405 544 192 160 0 chr4 29321643 29321768 -154966894 + MLT1H LTR MaLR 405 549 0 1748 239 126 10 chr4 29322387 29322873 -154965789 - MLT1F LTR MaLR 0 542 1 360 246 92 80 chr4 29323120 29323254 -154965408 - MIR SINE MIR -67 141 30 2022 119 3 0 chr4 29323254 29323548 -154965114 - AluSx SINE Alu -16 296 2 360 246 92 80 chr4 29323548 29323578 -154965084 - MIR SINE MIR -178 30 2 252 122 0 0 chr4 29324433 29324474 -154964188 + (GGA)n Simple_repeat Simple_repeat 3 43 0 180 111 0 0 chr4 29326374 29326401 -154962261 + (A)n Simple_repeat Simple_repeat 1 27 0 522 254 66 44 chr4 29326732 29326913 -154961749 - MARNA DNA Mariner -86 500 316 220 407 12 0 chr4 29326995 29327081 -154961581 + L2 LINE L2 3186 3272 0 288 333 88 13 chr4 29327088 29327247 -154961415 - MARNA DNA Mariner -373 213 43 520 318 17 22 chr4 29328363 29328542 -154960120 - MIR SINE MIR -6 256 79 317 311 40 66 chr4 29328590 29328741 -154959921 - MIR SINE MIR -114 148 2 390 236 57 36 chr4 29329041 29329181 -154959481 - L2 LINE L2 -8 3264 3122 516 318 107 5 chr4 29329213 29329411 -154959251 - MIR SINE MIR 0 262 45 2400 58 0 0 chr4 29329420 29329714 -154958948 + AluY SINE Alu 1 294 -17 328 326 81 62 chr4 29329737 29329871 -154958791 - L2 LINE L2 -437 2877 2747 1921 123 6 25 chr4 29329871 29330188 -154958474 - AluSx SINE Alu -1 311 1 328 326 81 62 chr4 29330188 29330375 -154958287 - L2 LINE L2 -567 2747 2550 386 344 74 34 chr4 29330493 29330871 -154957791 - L2 LINE L2 -1224 2090 1698 30 0 0 0 chr4 29331809 29331839 -154956823 + AT_rich Low_complexity Low_complexity 1 30 0 264 239 76 22 chr4 29332092 29332184 -154956478 + L1MC4a LINE L1 5834 5930 -1878 209 222 0 0 chr4 29332224 29332269 -154956393 + (TA)n Simple_repeat Simple_repeat 1 45 0 22 0 0 0 chr4 29332395 29332417 -154956245 + AT_rich Low_complexity Low_complexity 1 22 0 1819 147 7 10 chr4 29332424 29332730 -154955932 + AluSx SINE Alu 1 305 -7 204 214 0 36 chr4 29332756 29332812 -154955850 + A-rich Low_complexity Low_complexity 2 55 0 180 319 43 14 chr4 29333617 29333686 -154954976 - MER5A DNA MER1_type -21 168 98 183 286 24 48 chr4 29334081 29334165 -154954497 - L2 LINE L2 -1903 1411 1330 764 190 127 13 chr4 29334630 29334788 -154953874 - MER45A DNA AcHobo 0 178 3 270 234 76 108 chr4 29335826 29335984 -154952678 - MIR SINE MIR -42 220 68 300 230 20 10 chr4 29336217 29336317 -154952345 - MER113 DNA MER1_type? -415 106 6 454 333 36 18 chr4 29336619 29336838 -154951824 - L3 LINE CR1 -498 1079 857 517 240 45 169 chr4 29337168 29337270 -154951392 - L1ME4a LINE L1 -230 5891 5778 2007 128 7 0 chr4 29337270 29337559 -154951103 + AluSx SINE Alu 1 291 -21 517 240 45 169 chr4 29337559 29337922 -154950740 - L1ME4a LINE L1 -343 5778 5484 1002 184 27 5 chr4 29338575 29338760 -154949902 + MER5A DNA MER1_type 1 189 0 349 274 48 0 chr4 29339356 29339440 -154949222 + MER117 DNA MER1_type 109 196 -1 287 140 105 0 chr4 29339469 29339526 -154949136 + L2 LINE L2 3210 3272 0 24 0 0 0 chr4 29342350 29342374 -154946288 + AT_rich Low_complexity Low_complexity 1 24 0 411 292 40 71 chr4 29342558 29342911 -154945751 + L1ME4a LINE L1 5573 5914 -207 261 0 0 0 chr4 29342929 29342958 -154945704 + (TC)n Simple_repeat Simple_repeat 1 29 0 * 306 0 0 0 chr4 29342957 29342991 -154945671 + (CA)n Simple_repeat Simple_repeat 1 34 0 282 56 0 0 chr4 29342991 29343027 -154945635 + (GA)n Simple_repeat Simple_repeat 1 36 0 2614 54 0 0 chr4 29343111 29343407 -154945255 - AluY SINE Alu -15 296 1 182 200 73 0 chr4 29344179 29344234 -154944428 - L2 LINE L2 -335 2978 2920 3473 179 6 25 chr4 29344288 29344920 -154943742 - MER82 DNA MER2_type -4 649 30 230 343 19 19 chr4 29345606 29345714 -154942948 + MIR SINE MIR 33 140 -122 236 213 0 0 chr4 29346975 29347022 -154941640 + MER91 DNA MER1_type 1 47 -93 411 308 109 24 chr4 29347705 29348196 -154940466 + L2 LINE L2 2739 3272 -41 2062 125 4 0 chr4 29348419 29348735 -154939927 + AluSx SINE Alu 1 317 0 557 258 54 21 chr4 29348801 29349020 -154939642 - MIR SINE MIR -34 228 11 279 215 156 76 chr4 29349138 29349375 -154939287 + L2 LINE L2 2900 3155 -158 232 240 94 10 chr4 29349375 29349471 -154939191 - HsTC2 DNA Tc2 0 1900 1797 340 118 0 0 chr4 29349480 29349531 -154939131 - HsTC2 DNA Tc2 -1846 52 2 297 192 192 48 chr4 29349532 29349657 -154939005 + L2 LINE L2 3167 3309 -4 478 220 0 10 chr4 29349670 29349770 -154938892 - MIR SINE MIR -91 171 73 290 304 40 27 chr4 29351310 29351458 -154937204 + L2 LINE L2 3104 3253 -60 422 242 86 0 chr4 29351552 29351680 -154936982 - MIR SINE MIR -86 176 38 428 224 10 10 chr4 29351770 29351868 -154936794 - MER63 DNA MER1_type -291 771 674 4302 140 21 28 chr4 29351916 29352218 -154936444 + MER44D DNA MER2_type 32 201 -2286 2242 90 4 0 chr4 29352218 29352535 -154936127 + AluSc SINE Alu 1 318 0 4302 140 21 28 chr4 29352535 29352938 -154935724 + MER44D DNA MER2_type 201 605 0 201 64 0 64 chr4 29354116 29354163 -154934499 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 270 320 86 36 chr4 29354334 29354556 -154934106 - L2 LINE L2 -233 3039 2807 204 213 0 0 chr4 29355131 29355178 -154933484 + (CA)n Simple_repeat Simple_repeat 2 48 0 1035 165 0 24 chr4 29355186 29355356 -154933306 - AluJb SINE Alu -11 301 136 416 19 19 0 chr4 29356207 29356260 -154932402 + (CA)n Simple_repeat Simple_repeat 2 55 0 1019 81 0 0 chr4 29357411 29357535 -154931127 + AluSg/x SINE Alu 176 299 -11 225 286 0 66 chr4 29358431 29358522 -154930140 - MIR3 SINE MIR -32 176 92 654 298 80 30 chr4 29358698 29359061 -154929601 + L2 LINE L2 2879 3259 -54 1955 143 3 34 chr4 29359211 29359533 -154929129 + AluSx SINE Alu 1 312 0 280 263 166 23 chr4 29359837 29360012 -154928650 + MIR SINE MIR 58 257 -5 867 265 90 45 chr4 29360149 29360504 -154928158 - L2 LINE L2 0 3313 2943 1183 200 98 0 chr4 29361160 29361455 -154927207 - MER5C DNA MER1_type 0 324 1 1738 182 65 3 chr4 29362992 29363316 -154925346 + MER47A DNA MER2_type 1 344 -22 6940 165 3 10 chr4 29363317 29365192 -154923470 + L1PB1 LINE L1 3932 5792 -359 189 0 0 0 chr4 29365192 29365213 -154923449 + (CA)n Simple_repeat Simple_repeat 1 21 0 6940 165 3 10 chr4 29365213 29365571 -154923091 + L1PB1 LINE L1 5792 6151 0 510 272 35 40 chr4 29365777 29366005 -154922657 + MER34 LTR ERV1 1 227 -315 323 235 158 65 chr4 29366609 29366856 -154921806 + MER34 LTR ERV1 225 494 -48 2181 129 3 0 chr4 29366939 29367250 -154921412 + AluSx SINE Alu 1 312 0 308 143 238 60 chr4 29367402 29367486 -154921176 + LTR8 LTR ERV1 1 99 -592 2281 165 179 20 chr4 29367490 29368036 -154920626 + LTR10E LTR ERV1 1 633 0 2661 194 46 47 chr4 29368039 29368653 -154920009 + LTR8A LTR ERV1 115 727 0 1467 201 0 0 chr4 29368686 29368925 -154919737 - MER8 DNA MER2_type 0 239 1 232 339 31 23 chr4 29369654 29369784 -154918878 + MIR SINE MIR 58 188 -74 291 28 0 0 chr4 29370737 29370773 -154917889 + (CA)n Simple_repeat Simple_repeat 2 37 0 196 287 205 0 chr4 29370838 29370960 -154917702 + MIR3 SINE MIR 54 200 -8 232 282 51 26 chr4 29370987 29371065 -154917597 + MIR SINE MIR 25 104 -104 204 381 94 5 chr4 29371075 29371298 -154917364 - MIR SINE MIR 0 262 20 181 268 42 0 chr4 29372414 29372485 -154916177 + L2 LINE L2 3115 3188 -125 345 289 29 0 chr4 29372503 29372607 -154916055 + MER94 DNA DNA 6 112 -22 566 293 16 60 chr4 29372732 29372981 -154915681 + MIR SINE MIR 10 247 -15 542 258 22 22 chr4 29373592 29373774 -154914888 - MIR SINE MIR -11 251 70 376 308 76 20 chr4 29373988 29374026 -154914636 + MLT1L LTR MaLR 401 435 -180 690 179 20 77 chr4 29374026 29374222 -154914440 - MER53 DNA DNA 0 189 5 376 308 76 20 chr4 29374222 29374381 -154914281 + MLT1L LTR MaLR 435 609 -6 21 0 0 0 chr4 29374585 29374606 -154914056 + AT_rich Low_complexity Low_complexity 1 21 0 1686 86 9 0 chr4 29374774 29374995 -154913667 + AluY SINE Alu 83 305 -6 198 0 0 0 chr4 29375117 29375139 -154913523 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 189 74 0 0 chr4 29375534 29375561 -154913101 + (TC)n Simple_repeat Simple_repeat 1 27 0 346 261 63 74 chr4 29375843 29376127 -154912535 + L1M4 LINE L1 4565 4845 -1301 294 125 0 0 chr4 29378033 29378081 -154910581 + (GA)n Simple_repeat Simple_repeat 2 49 0 246 95 0 0 chr4 29378169 29378211 -154910451 + (T)n Simple_repeat Simple_repeat 1 42 0 2003 123 3 7 chr4 29378227 29378511 -154910151 + AluSx SINE Alu 1 283 -29 2318 57 0 69 chr4 29378955 29379272 -154909390 + AluY SINE Alu 1 295 -16 27 49 0 0 chr4 29379382 29379423 -154909239 + AT_rich Low_complexity Low_complexity 1 41 0 709 186 16 8 chr4 29379432 29379561 -154909101 - FLAM_C SINE Alu -2 131 2 770 226 57 0 chr4 29379563 29379740 -154908922 + MER3 DNA MER1_type 12 198 -11 1276 230 60 0 chr4 29379811 29380063 -154908599 + Tigger7 DNA MER2_type 1 267 -2220 564 168 0 30 chr4 29380062 29380163 -154908499 + Tigger7 DNA MER2_type 2390 2487 0 * 489 76 0 0 chr4 29380204 29380270 -154908392 + (CA)n Simple_repeat Simple_repeat 1 66 0 34 24 0 0 chr4 29380950 29380991 -154907671 + AT_rich Low_complexity Low_complexity 1 41 0 2012 134 14 7 chr4 29381098 29381412 -154907250 - AluSx SINE Alu 0 316 1 213 39 0 0 chr4 29382145 29382171 -154906491 + (A)n Simple_repeat Simple_repeat 1 26 0 2141 100 7 10 chr4 29383163 29383464 -154905198 + AluSq SINE Alu 2 301 -12 1330 112 0 0 chr4 29383464 29383642 -154905020 + AluSg/x SINE Alu 132 309 -1 466 204 42 42 chr4 29383660 29383802 -154904860 + MER5A DNA MER1_type 43 184 -5 1961 161 45 9 chr4 29384021 29384357 -154904305 + MER7A DNA MER2_type 1 346 0 505 284 59 87 chr4 29385163 29385554 -154903108 + MLT1I LTR MaLR 28 407 -2 389 248 101 20 chr4 29385709 29385858 -154902804 - MIR SINE MIR -54 208 48 265 234 16 16 chr4 29386322 29386386 -154902276 - L2 LINE L2 -2 3270 3207 882 249 114 4 chr4 29386471 29386744 -154901918 + MER46C DNA MER2_type 27 329 -9 412 185 99 0 chr4 29387141 29387222 -154901440 - MER112 DNA MER1_type -78 182 94 220 362 37 3 chr4 29387743 29387868 -154900794 - MIR SINE MIR -59 149 16 1977 177 0 0 chr4 29388092 29388408 -154900254 + MER7A DNA MER2_type 29 342 -4 782 255 62 5 chr4 29388521 29388729 -154899933 + MIR SINE MIR 2 221 -41 457 299 57 0 chr4 29389851 29390055 -154898607 - MIR SINE MIR 0 262 48 270 291 120 8 chr4 29390055 29390172 -154898490 - LTR67 LTR ERVL 0 557 428 295 322 50 33 chr4 29392050 29392171 -154896491 + L2 LINE L2 3146 3268 -4 483 266 131 34 chr4 29394145 29394366 -154894296 - MIR SINE MIR -9 253 12 1837 159 0 13 chr4 29395645 29395953 -154892709 + AluJb SINE Alu 2 305 -7 647 263 18 58 chr4 29396093 29396317 -154892345 + MIR SINE MIR 19 233 -29 410 159 23 34 chr4 29396518 29396606 -154892056 - MIR SINE MIR -34 228 142 1338 212 90 40 chr4 29396706 29397083 -154891579 - MSTD LTR MaLR 0 396 1 381 291 69 26 chr4 29397133 29397322 -154891340 + MLT1J LTR MaLR 307 503 -8 2025 107 41 3 chr4 29397541 29397831 -154890831 - AluSx SINE Alu -9 303 3 228 111 0 0 chr4 29397886 29397922 -154890740 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 220 220 0 51 chr4 29397938 29397997 -154890665 + MIR3 SINE MIR 15 70 -138 249 226 16 16 chr4 29398212 29398274 -154890388 + (TAG)n Simple_repeat Simple_repeat 1 62 0 318 132 0 0 chr4 29398946 29398999 -154889663 + (ATG)n Simple_repeat Simple_repeat 3 55 0 835 200 16 60 chr4 29399054 29399290 -154889372 + L1ME3 LINE L1 5934 6162 -8 264 203 95 0 chr4 29399353 29399427 -154889235 + L1ME4a LINE L1 6000 6080 -41 238 304 14 14 chr4 29400231 29400300 -154888362 + L2 LINE L2 3199 3267 -5 221 81 0 27 chr4 29400582 29400619 -154888043 + (GGAA)n Simple_repeat Simple_repeat 1 36 0 231 316 119 68 chr4 29400883 29401177 -154887485 - L2 LINE L2 -32 3240 2932 302 280 17 86 chr4 29402166 29402338 -154886324 - MIR SINE MIR -53 209 50 216 339 0 0 chr4 29402525 29402584 -154886078 - L2 LINE L2 -9 3263 3205 337 296 50 36 chr4 29402818 29403038 -154885624 - L2 LINE L2 -425 2889 2667 266 352 66 11 chr4 29403837 29404019 -154884643 + L2 LINE L2 2897 3088 -184 262 254 180 74 chr4 29405895 29406017 -154882645 - L2 LINE L2 0 3272 3138 208 321 0 0 chr4 29406177 29406233 -154882429 + L2 LINE L2 3201 3256 -16 1540 195 0 7 chr4 29406668 29406975 -154881687 + AluJb SINE Alu 1 305 -7 874 277 25 4 chr4 29407506 29407713 -154880949 - L1ME1 LINE L1 -5 6161 5947 2203 92 3 10 chr4 29407713 29408027 -154880635 - AluSq SINE Alu -1 312 1 874 277 25 4 chr4 29408027 29408057 -154880605 - L1ME1 LINE L1 -219 5947 5919 665 137 8 16 chr4 29408057 29408181 -154880481 + L1MA10 LINE L1 6212 6334 0 457 111 0 0 chr4 29408304 29408367 -154880295 + MER66B LTR ERV1 295 357 -129 1656 225 37 31 chr4 29408439 29408817 -154879845 - L1ME1 LINE L1 -491 5675 5281 2185 104 3 0 chr4 29408817 29409126 -154879536 - AluSg SINE Alu 0 310 1 1656 225 37 31 chr4 29409126 29409317 -154879345 - L1ME1 LINE L1 -885 5281 5093 405 58 0 0 chr4 29409331 29409383 -154879279 + (TG)n Simple_repeat Simple_repeat 1 52 0 1988 118 0 0 chr4 29409383 29409663 -154878999 - AluSq SINE Alu -33 280 1 846 257 107 65 chr4 29409665 29410077 -154878585 + MLT1J LTR MaLR 41 469 -42 1844 133 14 0 chr4 29410292 29410625 -154878037 - AluSq SINE Alu 0 337 1 455 178 23 62 chr4 29411106 29411235 -154877427 - MIR SINE MIR -34 228 105 296 277 12 0 chr4 29411252 29411335 -154877327 + MLT1K LTR MaLR 26 109 -479 1836 154 36 109 chr4 29411637 29412131 -154876531 - MLT1C LTR MaLR -9 458 1 1683 167 10 16 chr4 29412343 29412654 -154876008 + AluJo SINE Alu 1 309 -3 184 255 21 85 chr4 29413387 29413481 -154875181 - MER5A DNA MER1_type -10 179 92 1541 178 36 111 chr4 29413481 29413504 -154875158 - MLT1C LTR MaLR 0 467 444 2130 104 7 126 chr4 29413504 29413917 -154874745 + THE1B LTR MaLR 1 364 0 1541 178 36 111 chr4 29413917 29414374 -154874288 - MLT1C LTR MaLR -23 444 18 314 333 10 10 chr4 29414411 29414507 -154874155 - MER5A DNA MER1_type -91 98 3 217 407 93 7 chr4 29414507 29414641 -154874021 - L2 LINE L2 -50 3222 3077 665 212 143 25 chr4 29414656 29414859 -154873803 + MIR SINE MIR 36 262 0 274 314 12 12 chr4 29415013 29415099 -154873563 - L2 LINE L2 -4 3268 3183 377 313 18 9 chr4 29415274 29415386 -154873276 + L2 LINE L2 3159 3271 -1 195 256 0 0 chr4 29416198 29416241 -154872421 + L2 LINE L2 3267 3309 -4 31 76 0 0 chr4 29416674 29416740 -154871922 + GC_rich Low_complexity Low_complexity 1 66 0 210 265 20 20 chr4 29416827 29416974 -154871688 + (CCG)n Simple_repeat Simple_repeat 1 147 0 29 84 0 0 chr4 29416989 29417060 -154871602 + GC_rich Low_complexity Low_complexity 1 71 0 353 274 123 0 chr4 29417258 29417364 -154871298 + L2 LINE L2 3191 3309 -4 758 141 0 16 chr4 29417601 29417729 -154870933 + AluJb SINE Alu 13 138 -174 331 301 68 28 chr4 29417737 29417913 -154870749 + MER113 DNA MER1_type? 339 521 0 272 277 79 10 chr4 29417989 29418090 -154870572 - MIR SINE MIR -56 206 99 240 35 0 0 chr4 29418313 29418342 -154870320 + (A)n Simple_repeat Simple_repeat 1 29 0 795 232 98 54 chr4 29418374 29418689 -154869973 + MLT1H LTR MaLR 217 545 -4 342 0 0 0 chr4 29420715 29420753 -154867909 + (TG)n Simple_repeat Simple_repeat 2 39 0 221 242 187 22 chr4 29423121 29423212 -154865450 - L2 LINE L2 -3 3269 3164 374 39 0 0 chr4 29423357 29423408 -154865254 + L1MB4 LINE L1 6118 6168 -12 239 314 0 0 chr4 29423658 29423728 -154864934 + MIR3 SINE MIR 104 173 -35 439 319 0 35 chr4 29423861 29424002 -154864660 - MIR3 SINE MIR -60 148 13 1035 219 102 104 chr4 29424037 29424624 -154864038 - MLT1H1 LTR MaLR -2 553 1 370 141 370 22 chr4 29424963 29425055 -154863607 + L2 LINE L2 3180 3303 -10 322 245 41 31 chr4 29425083 29425181 -154863481 - MIR SINE MIR 0 262 164 196 296 104 72 chr4 29425651 29425776 -154862886 - MIR SINE MIR -112 150 22 1006 210 39 63 chr4 29425805 29426158 -154862504 - MLT1B LTR MaLR -1 389 4 400 277 39 92 chr4 29427212 29427418 -154861244 - L2 LINE L2 -7 3306 3112 272 195 24 37 chr4 29427705 29427787 -154860875 - MLT1J LTR MaLR -8 503 423 513 248 68 31 chr4 29427934 29428095 -154860567 - MLT1J LTR MaLR -268 243 77 185 289 0 22 chr4 29428183 29428228 -154860434 - L3 LINE CR1 -27 1550 1507 1746 249 91 75 chr4 29428255 29428837 -154859825 - MLT1G LTR MaLR -4 583 1 490 304 39 67 chr4 29428863 29429175 -154859487 - MLT1G-int LTR MaLR -31 1340 1038 213 121 0 0 chr4 29429425 29429458 -154859204 + (TTTTG)n Simple_repeat Simple_repeat 5 37 0 2048 106 10 13 chr4 29429838 29430139 -154858523 + AluSq SINE Alu 1 300 -13 507 270 122 39 chr4 29430141 29430371 -154858291 - MLT1G-int LTR MaLR -833 538 290 2175 230 72 22 chr4 29430518 29431070 -154857592 - MLT1G LTR MaLR 0 590 11 193 283 0 0 chr4 29432500 29432553 -154856109 + L2 LINE L2 2838 2890 -424 533 161 14 1 chr4 29432581 29432680 -154855982 + MLT1D LTR MaLR 367 505 0 979 288 60 62 chr4 29433961 29434394 -154854268 + MLT1J2 LTR MaLR 21 447 -3 318 222 0 91 chr4 29435119 29435218 -154853444 + L1MC4 LINE L1 6614 6703 -1339 32 0 0 0 chr4 29435221 29435253 -154853409 + AT_rich Low_complexity Low_complexity 1 32 0 461 214 47 107 chr4 29435253 29435504 -154853158 - MLT1I LTR MaLR 0 413 202 255 235 88 0 chr4 29435515 29435583 -154853079 - MLT1J2 LTR MaLR -304 146 73 344 337 101 17 chr4 29435838 29436016 -154852646 + MLT1K LTR MaLR 54 246 -342 198 0 0 0 chr4 29436627 29436649 -154852013 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 1589 86 9 0 chr4 29436770 29436990 -154851672 - AluY SINE Alu -7 304 83 2086 249 57 29 chr4 29487735 29488788 -154799874 + L1MEc LINE L1 2001 3052 -3488 435 306 9 0 chr4 29488788 29488899 -154799763 + MER81 DNA DNA 1 112 -2 2086 249 57 29 chr4 29488899 29489015 -154799647 + L1MEc LINE L1 3052 3163 -3377 7309 57 12 5 chr4 29489021 29490349 -154798313 + L1PA4 LINE L1 112 6056 -493 3325 31 0 0 chr4 29490371 29490763 -154797899 + L1PA4 LINE L1 6157 6548 -1 21 0 0 0 chr4 29490763 29490784 -154797878 + AT_rich Low_complexity Low_complexity 1 21 0 2472 211 123 152 chr4 29490855 29491748 -154796914 + L1MEc LINE L1 273 1191 -5349 408 153 0 0 chr4 29491748 29491807 -154796855 + AluJ/FLAM SINE Alu 1 59 -253 1482 190 7 7 chr4 29491807 29492076 -154796586 + AluJo SINE Alu 28 296 -16 2472 211 123 152 chr4 29492076 29493289 -154795373 + L1MEc LINE L1 1189 2374 -4166 1188 225 38 12 chr4 29493283 29493625 -154795037 + L1MEc LINE L1 3156 3506 -3034 * 2365 109 64 0 chr4 29493642 29493972 -154794690 + LTR18A LTR ERVL 7 357 0 33713 168 9 3 chr4 29493996 29499222 -154789440 + HERVL18 LTR ERVL 791 6047 0 2137 155 38 0 chr4 29499223 29499540 -154789122 + LTR18A LTR ERVL 1 329 -28 * 2692 143 65 10 chr4 29499534 29500054 -154788608 + MER4B LTR ERV1 47 772 -7 644 234 0 41 chr4 29500075 29500132 -154788530 + L1MA10 LINE L1 6171 6229 -105 3998 173 26 29 chr4 29500132 29500152 -154788510 + MER4E LTR ERV1 1 20 -759 1646 154 14 0 chr4 29500152 29500471 -154788191 - AluJb SINE Alu 0 323 1 3998 173 26 29 chr4 29500471 29501231 -154787431 + MER4E LTR ERV1 20 779 0 644 234 0 41 chr4 29501231 29501344 -154787318 + L1MA10 LINE L1 6229 6334 0 630 293 50 33 chr4 29501347 29501647 -154787015 + MLT1K LTR MaLR 275 579 -9 266 293 129 26 chr4 29502451 29502567 -154786095 + L2 LINE L2 3137 3264 -8 429 226 0 32 chr4 29502754 29502909 -154785753 + G-rich Low_complexity Low_complexity 1 150 0 297 143 20 0 chr4 29502931 29502980 -154785682 - MLT1K LTR MaLR -343 245 196 277 191 9 38 chr4 29503244 29503349 -154785313 + GA-rich Low_complexity Low_complexity 2 103 0 322 234 174 36 chr4 29503355 29503522 -154785140 + MLT1K LTR MaLR 396 585 -3 2189 94 0 23 chr4 29503737 29504046 -154784616 + AluSx SINE Alu 1 302 -10 780 259 137 50 chr4 29504471 29504830 -154783832 + MLT1K LTR MaLR 197 586 -2 1491 191 11 3 chr4 29505150 29505460 -154783202 + AluJo SINE Alu 1 312 0 1287 197 24 45 chr4 29505460 29505790 -154782872 + MER33 DNA MER1_type 1 323 -1 779 287 109 39 chr4 29506252 29506709 -154781953 - LTR16C LTR ERVL -2 489 1 469 260 73 11 chr4 29506713 29506890 -154781772 + MLT1K LTR MaLR 395 582 -6 21 0 0 0 chr4 29508060 29508081 -154780581 + AT_rich Low_complexity Low_complexity 1 21 0 423 262 29 0 chr4 29508662 29508765 -154779897 + MIR SINE MIR 51 156 -106 2476 130 31 0 chr4 29508772 29509125 -154779537 + THE1B LTR MaLR 1 364 0 273 89 0 0 chr4 29509183 29509228 -154779434 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 188 163 0 20 chr4 29509230 29509279 -154779383 + (CA)n Simple_repeat Simple_repeat 1 48 0 384 22 0 0 chr4 29509333 29509378 -154779284 + (TG)n Simple_repeat Simple_repeat 1 45 0 352 200 0 0 chr4 29509463 29509533 -154779129 - MIR SINE MIR 0 262 193 1083 180 57 87 chr4 29509727 29509964 -154778698 + MER33 DNA MER1_type 2 228 -2357 2270 81 7 3 chr4 29509964 29510272 -154778390 - AluSx SINE Alu -3 309 1 1083 180 57 87 chr4 29510272 29510367 -154778295 + MER33 DNA MER1_type 228 324 0 435 266 50 52 chr4 29510540 29510783 -154777879 + MLT1J LTR MaLR 205 367 -144 268 308 0 0 chr4 29510940 29511018 -154777644 + LTR67 LTR ERVL 32 109 -448 263 253 13 13 chr4 29511105 29511184 -154777478 + LTR67 LTR ERVL 471 549 -8 443 255 0 20 chr4 29511595 29511697 -154776965 + MIR SINE MIR 35 134 -128 685 264 6 13 chr4 29511713 29511872 -154776790 + MER45A DNA AcHobo 21 178 0 226 344 56 0 chr4 29511872 29511997 -154776665 + MIR SINE MIR 128 259 -3 427 261 82 46 chr4 29513082 29513264 -154775398 + MIR3 SINE MIR 6 197 -11 2535 29 7 3 chr4 29513264 29513571 -154775091 - AluY SINE Alu -3 308 1 427 261 82 46 chr4 29513571 29513583 -154775079 + MIR3 SINE MIR 197 207 -1 343 208 22 131 chr4 29513706 29513889 -154774773 - L2 LINE L2 -76 3237 3075 495 222 49 25 chr4 29513964 29514126 -154774536 - MLT1G LTR MaLR 0 542 402 501 248 20 34 chr4 29514172 29514317 -154774345 - MLT1G LTR MaLR -286 304 162 1727 206 134 79 chr4 29514317 29514646 -154774016 + MLT1E1 LTR MaLR 1 310 -344 255 31 0 0 chr4 29514646 29514678 -154773984 + (TC)n Simple_repeat Simple_repeat 1 32 0 2042 153 12 52 chr4 29514688 29515094 -154773568 + MLT1B LTR MaLR 1 390 0 1727 206 134 79 chr4 29515094 29515373 -154773289 + MLT1E1 LTR MaLR 318 654 0 343 221 27 41 chr4 29515373 29515516 -154773146 - MLT1G LTR MaLR -400 155 1 311 216 157 49 chr4 29516108 29516210 -154772452 - L3 LINE CR1 -21 1556 1444 494 240 16 16 chr4 29516898 29517019 -154771643 - MIR SINE MIR -16 246 126 375 244 81 16 chr4 29517497 29517620 -154771042 + MIR SINE MIR 37 167 -95 847 285 9 0 chr4 29517627 29517848 -154770814 - MER58A DNA MER1_type -1 223 1 557 198 23 79 chr4 29517859 29517914 -154770748 - MLT1J LTR MaLR -22 489 432 2001 125 0 10 chr4 29517914 29518210 -154770452 + AluSc SINE Alu 1 293 -16 557 198 23 79 chr4 29518210 29518331 -154770331 - MLT1J LTR MaLR -79 432 323 942 278 92 46 chr4 29518336 29518419 -154770243 - L2 LINE L2 -407 2907 2829 302 0 26 0 chr4 29518419 29518457 -154770205 + (TG)n Simple_repeat Simple_repeat 2 40 0 942 278 92 46 chr4 29518457 29518743 -154769919 - L2 LINE L2 -485 2829 2521 349 293 0 0 chr4 29518900 29518982 -154769680 + L2 LINE L2 3160 3241 -31 1014 103 0 0 chr4 29518982 29519118 -154769544 - AluSc SINE Alu -158 151 16 288 218 64 13 chr4 29519465 29519543 -154769119 + MIR3 SINE MIR 90 171 -37 1386 149 116 11 chr4 29519714 29519982 -154768680 + AluSg SINE Alu 1 296 -14 1110 259 8 4 chr4 29520228 29520483 -154768179 + MIR SINE MIR 7 262 0 216 245 19 0 chr4 29520504 29520557 -154768105 + MIR SINE MIR 73 126 -136 671 258 45 0 chr4 29520557 29520735 -154767927 + MIR SINE MIR 59 244 -18 242 276 126 11 chr4 29520751 29520838 -154767824 - L2 LINE L2 -3 3269 3173 2029 224 171 4 chr4 29522578 29523064 -154765598 - MLT1F1 LTR MaLR 0 567 1 387 294 111 8 chr4 29524970 29525096 -154763566 + MLT1E LTR MaLR 1 139 -454 1798 141 7 10 chr4 29525166 29525456 -154763206 - AluJo SINE Alu -21 291 3 211 281 91 74 chr4 29525515 29525636 -154763026 + L2 LINE L2 3177 3299 -14 3728 161 25 0 chr4 29531617 29531790 -154756872 + L1MB3 LINE L1 5524 5691 -492 1843 174 80 3 chr4 29531790 29532129 -154756533 + MLT1A1 LTR MaLR 1 365 0 3728 161 25 0 chr4 29532129 29532599 -154756063 + L1MB3 LINE L1 5691 6183 0 593 105 0 9 chr4 29532743 29532848 -154755814 + L1MA8 LINE L1 6185 6288 -3 605 293 13 47 chr4 29533097 29533329 -154755333 + MIR SINE MIR 39 262 0 1033 205 13 61 chr4 29533942 29534171 -154754491 - MIR SINE MIR -30 232 15 641 304 93 23 chr4 29534223 29534694 -154753968 - L1ME4a LINE L1 -108 6013 5510 351 0 0 0 chr4 29534862 29534901 -154753761 + (TG)n Simple_repeat Simple_repeat 2 40 0 2058 103 17 13 chr4 29535545 29535847 -154752815 + AluSx SINE Alu 1 303 -9 358 305 78 21 chr4 29535897 29536038 -154752624 - MIR SINE MIR -95 167 19 1238 258 31 80 chr4 29536199 29536900 -154751762 + L2 LINE L2 2553 3214 -99 2265 102 0 0 chr4 29536900 29537205 -154751457 - AluSg SINE Alu -5 305 1 1238 258 31 80 chr4 29537205 29537301 -154751361 + L2 LINE L2 3214 3313 0 1714 121 0 0 chr4 29537330 29537579 -154751083 + AluSg SINE Alu 60 308 -2 198 297 81 0 chr4 29537754 29537828 -154750834 - MIR SINE MIR -72 190 111 2000 135 3 6 chr4 29538072 29538384 -154750278 + AluJo SINE Alu 1 311 -1 251 309 138 0 chr4 29539223 29539317 -154749345 + L3 LINE CR1 918 1024 -553 205 156 0 0 chr4 29540433 29540465 -154748197 + MIR SINE MIR 221 252 -10 368 301 141 13 chr4 29540849 29541005 -154747657 + MIR SINE MIR 71 246 -16 257 304 0 29 chr4 29541756 29541827 -154746835 + A-rich Low_complexity Low_complexity 2 71 -29 1729 164 10 7 chr4 29541827 29542120 -154746542 + AluJo SINE Alu 6 299 -13 257 304 0 29 chr4 29542120 29542150 -154746512 + A-rich Low_complexity Low_complexity 71 100 0 2433 101 0 0 chr4 29544527 29544835 -154743827 + AluSg SINE Alu 1 308 -2 2210 125 0 0 chr4 29545845 29546140 -154742522 + AluSx SINE Alu 1 295 -17 1045 220 156 42 chr4 29546728 29547257 -154741405 + L2 LINE L2 2729 3313 0 2330 108 0 0 chr4 29548915 29549220 -154739442 + AluY SINE Alu 1 305 -6 231 61 0 0 chr4 29550325 29550358 -154738304 + (ATG)n Simple_repeat Simple_repeat 1 33 0 282 248 103 34 chr4 29550369 29550486 -154738176 - MIR SINE MIR -18 244 120 2368 96 0 0 chr4 29551492 29551785 -154736877 + AluSx SINE Alu 1 293 -19 281 209 88 77 chr4 29554548 29554639 -154734023 - MIR3 SINE MIR -39 169 78 198 0 0 0 chr4 29554655 29554677 -154733985 + (A)n Simple_repeat Simple_repeat 1 22 0 399 296 38 21 chr4 29555160 29555387 -154733275 + MIR SINE MIR 18 248 -14 195 42 0 0 chr4 29557356 29557380 -154731282 + (CA)n Simple_repeat Simple_repeat 2 25 0 285 264 129 12 chr4 29557384 29557547 -154731115 - MER5A DNA MER1_type -7 182 1 201 291 0 18 chr4 29557961 29558071 -154730591 + C-rich Low_complexity Low_complexity 6 113 0 * 215 200 24 35 chr4 29557991 29558076 -154730586 + (CCG)n Simple_repeat Simple_repeat 1 84 0 23 86 0 0 chr4 29558145 29558203 -154730459 + GC_rich Low_complexity Low_complexity 1 58 0 38 89 0 0 chr4 29558267 29558368 -154730294 + GC_rich Low_complexity Low_complexity 1 101 0 236 276 53 0 chr4 29558939 29559015 -154729647 - MIR SINE MIR -74 188 109 316 261 117 0 chr4 29559636 29559747 -154728915 - MIR SINE MIR -58 204 81 197 235 86 12 chr4 29560065 29560146 -154728516 + MIR SINE MIR 2 88 -174 252 242 234 8 chr4 29560152 29560280 -154728382 + MIR SINE MIR 57 213 -49 630 213 247 0 chr4 29560422 29560596 -154728066 + MER20 DNA MER1_type 3 219 0 214 207 35 0 chr4 29560681 29560739 -154727923 + MIR SINE MIR 90 149 -113 23 0 0 0 chr4 29560975 29560998 -154727664 + AT_rich Low_complexity Low_complexity 1 23 0 1037 333 98 23 chr4 29561339 29561520 -154727142 - L2 LINE L2 -16 3297 3131 2144 138 27 41 chr4 29561520 29561889 -154726773 - THE1B LTR MaLR 0 364 1 1037 333 98 23 chr4 29561889 29562391 -154726271 - L2 LINE L2 -182 3131 2499 2459 55 0 7 chr4 29562391 29562682 -154725980 - AluY SINE Alu -16 295 7 1037 333 98 23 chr4 29562682 29562988 -154725674 - L2 LINE L2 -814 2499 2217 429 347 42 33 chr4 29563835 29564048 -154724614 + MLT1K LTR MaLR 38 252 -336 371 286 6 0 chr4 29564148 29564316 -154724346 - L1M4 LINE L1 -2873 3273 3105 734 80 24 8 chr4 29565537 29565662 -154723000 + (TAGA)n Simple_repeat Simple_repeat 4 130 0 315 260 40 0 chr4 29565844 29565944 -154722718 - L2 LINE L2 -1 3271 3168 236 308 54 8 chr4 29567872 29568002 -154720660 - LTR16A LTR ERVL -314 136 1 1090 151 0 0 chr4 29568510 29568801 -154719861 - FRAM SINE Alu 0 301 11 437 342 71 18 chr4 29569040 29569138 -154719524 - MIR SINE MIR 0 262 171 2163 146 36 33 chr4 29569138 29569501 -154719161 - THE1B LTR MaLR 0 364 1 437 342 71 18 chr4 29569501 29569627 -154719035 - MIR SINE MIR -91 171 26 183 405 0 0 chr4 29569766 29569850 -154718812 - L2 LINE L2 -986 2328 2245 582 299 52 34 chr4 29571436 29571704 -154716958 + L2 LINE L2 2997 3269 -44 223 324 49 10 chr4 29571761 29571863 -154716799 + L2 LINE L2 3167 3272 0 671 211 0 8 chr4 29572102 29572235 -154716427 + FLAM_A SINE Alu 1 132 -1 195 42 0 0 chr4 29572346 29572370 -154716292 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 207 205 24 72 chr4 29573193 29573276 -154715386 + L2 LINE L2 2909 2987 -285 2209 89 0 7 chr4 29573319 29573600 -154715062 + AluSx SINE Alu 1 279 -33 428 0 19 0 chr4 29573601 29573653 -154715009 + (CA)n Simple_repeat Simple_repeat 2 54 0 785 191 38 108 chr4 29573763 29573888 -154714774 - Charlie5 DNA MER1_type -1 2623 2491 2361 169 39 28 chr4 29573888 29574350 -154714312 - MLT1C LTR MaLR 0 467 1 785 191 38 108 chr4 29574350 29574565 -154714097 - Charlie5 DNA MER1_type -133 2491 2307 7483 189 32 17 chr4 29574565 29574601 -154714061 - L1P4 LINE L1 -650 5516 5482 1707 167 0 57 chr4 29574601 29574919 -154713743 - AluJo SINE Alu -12 300 1 7483 189 32 17 chr4 29574919 29575400 -154713262 - L1P4 LINE L1 -684 5482 5009 1407 110 10 0 chr4 29575400 29575609 -154713053 - L1PB2 LINE L1 0 6151 5941 7483 189 32 17 chr4 29575609 29576855 -154711807 - L1P4 LINE L1 -1157 5009 3728 4079 123 5 16 chr4 29576857 29577492 -154711170 + L1PA16 LINE L1 5532 6159 -7 397 223 0 11 chr4 29577492 29577586 -154711076 - Charlie5 DNA MER1_type -312 2300 2208 1581 217 104 7 chr4 29577752 29578167 -154710495 - LTR43 LTR ERV1 -21 581 127 296 137 20 0 chr4 29578269 29578320 -154710342 - LTR60 LTR ERV1 -534 52 1 289 296 130 12 chr4 29578448 29578621 -154710041 - MIR SINE MIR -67 141 3 2746 82 6 0 chr4 29579316 29579669 -154708993 + THE1A LTR MaLR 1 355 0 398 218 30 60 chr4 29579743 29579877 -154708785 - MIR SINE MIR -22 186 56 310 260 32 52 chr4 29580225 29580379 -154708283 + MIR SINE MIR 32 182 -80 240 54 108 0 chr4 29580396 29580433 -154708229 - MER106A DNA MER1_type -47 189 149 1861 169 3 3 chr4 29580535 29580837 -154707825 - AluJo SINE Alu -5 307 6 505 275 183 50 chr4 29581392 29581504 -154707158 - L2 LINE L2 -4 3309 3213 1919 164 0 3 chr4 29581504 29581803 -154706859 - AluJo SINE Alu -13 299 2 505 275 183 50 chr4 29581803 29582328 -154706334 - L2 LINE L2 -100 3213 2568 354 251 211 0 chr4 29582526 29582697 -154705965 - MIR SINE MIR -10 252 46 195 69 0 0 chr4 29582944 29582973 -154705689 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 2348 187 37 24 chr4 29584087 29584578 -154704084 - MLT1D LTR MaLR -8 497 1 256 265 176 24 chr4 29584706 29584876 -154703786 + LTR33A LTR ERVL 9 204 -319 436 128 115 0 chr4 29585018 29585096 -154703566 + MER4A LTR ERV1 1 87 -577 1876 116 0 32 chr4 29585132 29585417 -154703245 + MER4A LTR ERV1 388 663 -1 392 221 32 0 chr4 29585418 29585513 -154703149 + LTR33A LTR ERVL 416 513 -10 243 320 39 33 chr4 29585542 29585695 -154702967 + MARNA DNA Mariner 95 248 -338 1306 211 124 75 chr4 29585764 29585953 -154702709 - MLT1D LTR MaLR -27 467 289 4016 114 62 3 chr4 29585953 29586531 -154702131 + LTR9 LTR ERV1 1 612 0 1306 211 124 75 chr4 29586531 29586711 -154701951 - MLT1D LTR MaLR -205 289 79 5308 62 3 12 chr4 29586711 29587377 -154701285 - PABL_A LTR ERV1 0 660 1 1306 211 124 75 chr4 29587377 29587461 -154701201 - MLT1D LTR MaLR -415 79 1 288 77 0 0 chr4 29587497 29587536 -154701126 + (CA)n Simple_repeat Simple_repeat 1 39 0 264 292 11 0 chr4 29587539 29587628 -154701034 + MARNA DNA Mariner 262 351 -235 245 261 261 0 chr4 29588652 29588767 -154699895 - MIR SINE MIR -34 228 84 276 280 33 71 chr4 29588773 29588955 -154699707 - MER104 DNA Tc2 -4 176 2 274 278 89 11 chr4 29589239 29589329 -154699333 - L2 LINE L2 -33 3280 3184 302 250 0 0 chr4 29589707 29589771 -154698891 + MIR SINE MIR 19 82 -180 435 300 88 19 chr4 29589890 29590150 -154698512 - L2 LINE L2 -538 2776 2499 1220 230 111 35 chr4 29590310 29590744 -154697918 + MLT1C LTR MaLR 1 467 0 538 275 6 35 chr4 29590932 29591103 -154697559 + MLT1J LTR MaLR 20 185 -326 1395 191 48 29 chr4 29591172 29591487 -154697175 + MER33 DNA MER1_type 1 321 -3 330 250 0 14 chr4 29591498 29591570 -154697092 + MER58A DNA MER1_type 1 71 -36 2190 122 0 0 chr4 29591592 29591886 -154696776 - AluJb SINE Alu -18 294 1 789 257 6 0 chr4 29591891 29592066 -154696596 + MER58A DNA MER1_type 40 215 -9 296 231 61 61 chr4 29592063 29592210 -154696452 + MLT1J LTR MaLR 321 467 -44 * 2061 144 39 33 chr4 29593215 29593577 -154695085 - THE1B LTR MaLR 0 364 1 2181 144 36 25 chr4 29594199 29594559 -154694103 + THE1B LTR MaLR 1 364 0 414 316 94 8 chr4 29594617 29594861 -154693801 + L2 LINE L2 2818 3082 -190 468 224 110 68 chr4 29595064 29595323 -154693339 - L1ME LINE L1 -502 5619 5353 248 300 46 39 chr4 29596045 29596175 -154692487 + L2 LINE L2 3179 3309 -4 213 283 33 0 chr4 29596175 29596235 -154692427 + (AATTG)n Simple_repeat Simple_repeat 1 62 0 1045 219 218 27 chr4 29596305 29596736 -154691926 - LTR33A LTR ERVL 0 523 48 430 237 244 6 chr4 29597340 29597496 -154691166 + MIR SINE MIR 67 259 -3 2112 109 7 0 chr4 29597513 29597817 -154690845 - AluY SINE Alu -4 307 2 707 303 38 41 chr4 29597863 29598206 -154690456 + L2 LINE L2 2931 3272 0 2093 123 0 0 chr4 29598455 29598757 -154689905 + AluSx SINE Alu 5 306 -6 376 261 48 0 chr4 29599080 29599198 -154689464 - MIR SINE MIR -60 148 65 685 262 89 11 chr4 29599284 29599475 -154689187 - MIR SINE MIR -11 251 46 771 182 62 17 chr4 29599494 29599670 -154688992 - MER53 DNA DNA -4 185 2 2326 122 42 14 chr4 29600550 29600904 -154687758 + THE1B LTR MaLR 1 364 0 554 273 94 28 chr4 29600927 29601272 -154687390 - MLT1J2 LTR MaLR -8 401 54 1317 148 15 38 chr4 29601435 29601584 -154687078 + L1MB3 LINE L1 5925 6067 -116 2365 107 11 29 chr4 29601584 29601966 -154686696 - THE1C LTR MaLR 0 375 1 1317 148 15 38 chr4 29601966 29602079 -154686583 + L1MB3 LINE L1 6067 6181 -2 414 0 0 0 chr4 29602088 29602134 -154686528 + (TA)n Simple_repeat Simple_repeat 1 46 0 607 234 17 17 chr4 29602477 29602652 -154686010 + MER5B DNA MER1_type 4 178 0 283 310 101 8 chr4 29602690 29602819 -154685843 + MIR SINE MIR 9 149 -113 583 290 43 6 chr4 29603966 29604128 -154684534 + MIR SINE MIR 84 251 -11 360 267 114 0 chr4 29604627 29604732 -154683930 + MER5B DNA MER1_type 5 121 -57 971 148 0 0 chr4 29604733 29604919 -154683743 - AluSg/x SINE Alu 0 320 135 195 227 23 0 chr4 29604919 29604963 -154683699 + MER5B DNA MER1_type 112 156 -22 339 113 0 0 chr4 29605085 29605138 -154683524 + (GGAA)n Simple_repeat Simple_repeat 4 56 0 510 231 70 48 chr4 29605675 29606007 -154682655 + MLT1H LTR MaLR 73 453 -96 1855 149 62 37 chr4 29606007 29606362 -154682300 - THE1B LTR MaLR 0 364 1 510 231 70 48 chr4 29606362 29606458 -154682204 + MLT1H LTR MaLR 453 545 -4 789 192 31 92 chr4 29606618 29606847 -154681815 + Charlie4 DNA MER1_type 1 215 -1746 * 914 208 38 0 chr4 29606846 29607058 -154681604 + Charlie4 DNA MER1_type 1742 1961 0 801 251 15 5 chr4 29607428 29607623 -154681039 - MIR SINE MIR 0 262 66 563 150 24 203 chr4 29607641 29607848 -154680814 + MER5B DNA MER1_type 1 170 -8 2797 144 19 0 chr4 29608318 29608734 -154679928 + MSTB LTR MaLR 1 424 -2 344 143 18 0 chr4 29608877 29608933 -154679729 - LTR40a LTR ERVL -2 517 461 1329 130 0 5 chr4 29608933 29609125 -154679537 + AluSx SINE Alu 1 191 -121 1227 226 112 25 chr4 29609160 29609554 -154679108 - LTR40c LTR ERVL -37 428 1 455 283 110 21 chr4 29609565 29609756 -154678906 + L2 LINE L2 3106 3313 0 775 219 6 12 chr4 29610152 29610324 -154678338 + MIR SINE MIR 55 224 -38 2234 170 66 25 chr4 29610564 29611005 -154677657 - LTR2B LTR ERV1 0 490 32 409 174 221 74 chr4 29611309 29611458 -154677204 - MIR SINE MIR -42 220 50 1821 181 132 50 chr4 29611473 29611585 -154677077 + MLT1D LTR MaLR 5 106 -399 2034 100 0 4 chr4 29611585 29611866 -154676796 - AluSg SINE Alu -23 287 8 1821 181 132 50 chr4 29611866 29612216 -154676446 + MLT1D LTR MaLR 106 505 0 644 261 206 9 chr4 29612383 29612601 -154676061 + MIR SINE MIR 2 262 0 963 122 0 0 chr4 29612622 29612769 -154675893 - AluJb SINE Alu -2 310 164 530 168 0 137 chr4 29613375 29613506 -154675156 + MER81 DNA DNA 2 114 0 264 276 94 16 chr4 29613764 29613891 -154674771 - MLT1L LTR MaLR -13 602 466 634 231 26 6 chr4 29614235 29614391 -154674271 + MER5B DNA MER1_type 3 161 -17 813 209 110 16 chr4 29614403 29614594 -154674068 - MER3 DNA MER1_type 0 209 1 681 312 32 12 chr4 29614685 29614938 -154673724 + MIR SINE MIR 2 259 -3 203 237 85 0 chr4 29615264 29615323 -154673339 + MIR SINE MIR 85 148 -60 411 38 0 0 chr4 29616481 29616534 -154672128 + (GA)n Simple_repeat Simple_repeat 2 54 0 656 284 5 5 chr4 29616730 29616920 -154671742 + MIR SINE MIR 23 212 -50 1692 175 0 3 chr4 29617112 29617398 -154671264 + AluJo SINE Alu 1 285 -27 694 236 50 16 chr4 29617772 29617954 -154670708 - MER5A DNA MER1_type -1 188 1 1666 161 7 3 chr4 29618366 29618651 -154670011 + AluJo SINE Alu 1 286 -26 435 212 179 57 chr4 29618815 29619132 -154669530 - MLT1H LTR MaLR 0 590 151 2144 158 40 21 chr4 29619161 29619590 -154669072 - LTR56 LTR ERV1 0 445 9 307 230 167 32 chr4 29619595 29619721 -154668941 + LTR50 LTR ERVL 154 296 -499 742 212 161 43 chr4 29619723 29619942 -154668720 + LTR50 LTR ERVL 503 758 -37 2080 126 0 0 chr4 29619942 29620244 -154668418 + AluSx SINE Alu 1 302 -10 742 212 161 43 chr4 29620244 29620279 -154668383 + LTR50 LTR ERVL 758 787 -8 573 259 98 92 chr4 29620308 29620776 -154667886 - MLT1L LTR MaLR -22 593 123 2569 132 47 0 chr4 29621654 29622063 -154666599 + MSTA LTR MaLR 1 428 0 205 95 24 24 chr4 29622183 29622225 -154666437 + (TATATG)n Simple_repeat Simple_repeat 5 46 0 281 164 100 0 chr4 29622282 29622392 -154666270 + (TA)n Simple_repeat Simple_repeat 1 121 0 2183 82 10 0 chr4 29622438 29622732 -154665930 - AluSg1 SINE Alu -12 297 1 195 302 0 0 chr4 29622786 29622829 -154665833 - MIR SINE MIR -164 98 56 197 347 116 16 chr4 29624138 29624259 -154664403 - MER5A DNA MER1_type -3 186 54 396 228 86 41 chr4 29624824 29625021 -154663641 + L1ME4a LINE L1 5463 5668 -453 203 365 24 0 chr4 29625042 29625127 -154663535 - L2 LINE L2 -1 3312 3226 274 317 0 0 chr4 29625186 29625290 -154663372 + L1ME4a LINE L1 5721 5824 -297 805 161 0 0 chr4 29625296 29625426 -154663236 + AluJo/FLAM SINE Alu 2 131 -171 1826 99 92 0 chr4 29625428 29625690 -154662972 + AluSg SINE Alu 1 286 -24 27 0 0 0 chr4 29625699 29625726 -154662936 + AT_rich Low_complexity Low_complexity 1 27 0 1978 147 0 0 chr4 29625735 29626041 -154662621 + AluSx SINE Alu 1 306 -6 329 245 185 46 chr4 29626069 29626285 -154662377 + L1ME4a LINE L1 5850 6095 -26 954 93 11 33 chr4 29626338 29626521 -154662141 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 356 0 0 22 chr4 29626522 29626567 -154662095 + (GAAAA)n Simple_repeat Simple_repeat 1 44 0 183 156 0 0 chr4 29627858 29627890 -154660772 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 2012 194 13 18 chr4 29627942 29628334 -154660328 - MLT2D LTR ERVL -14 400 11 821 230 0 0 chr4 29628351 29628529 -154660133 - L1PB4 LINE L1 -2 6154 5977 467 312 113 23 chr4 29629575 29629796 -154658866 - MIR SINE MIR -2 260 20 1985 144 0 3 chr4 29629829 29630141 -154658521 + AluSx SINE Alu 1 311 -1 757 96 16 8 chr4 29630141 29630266 -154658396 + (GGAA)n Simple_repeat Simple_repeat 2 127 0 383 291 16 16 chr4 29630290 29630417 -154658245 - MER5B DNA MER1_type -51 127 1 216 0 0 0 chr4 29631044 29631068 -154657594 + (A)n Simple_repeat Simple_repeat 1 24 0 348 24 0 0 chr4 29631353 29631394 -154657268 + (TTTTG)n Simple_repeat Simple_repeat 5 45 0 459 339 192 32 chr4 29631733 29632228 -154656434 - L3 LINE CR1 -970 607 34 655 203 165 0 chr4 29632405 29632563 -154656099 - MIR SINE MIR -77 185 2 2828 143 26 0 chr4 29632975 29633430 -154655232 + MLT1C LTR MaLR 1 467 0 1735 181 0 0 chr4 29634010 29634313 -154654349 + AluJo SINE Alu 1 303 -9 294 314 16 33 chr4 29634323 29634444 -154654218 + GA-rich Low_complexity Low_complexity 2 120 0 555 185 161 19 chr4 29634565 29634727 -154653935 - MER46C DNA MER2_type -127 211 27 484 324 44 5 chr4 29635356 29635539 -154653123 + MIR SINE MIR 11 200 -62 355 157 0 0 chr4 29636208 29636259 -154652403 - MLT1J LTR MaLR -202 309 259 409 282 87 32 chr4 29636348 29636550 -154652112 + MLT1H1 LTR MaLR 48 264 -326 2041 110 31 0 chr4 29636594 29636886 -154651776 + AluSq SINE Alu 1 301 -12 621 299 40 5 chr4 29636985 29637186 -154651476 + MIR SINE MIR 17 224 -38 244 237 39 135 chr4 29637233 29637389 -154651273 + L2 LINE L2 3118 3258 -14 1150 274 60 62 chr4 29637422 29637923 -154650739 - MLT1J LTR MaLR -6 505 6 494 232 32 24 chr4 29639024 29639149 -154649513 - MIR SINE MIR -48 214 89 281 283 18 18 chr4 29639295 29639408 -154649254 - MIR3 SINE MIR -2 206 94 289 348 99 25 chr4 29639706 29639867 -154648795 - MIR SINE MIR -29 233 61 1613 164 85 35 chr4 29639877 29640195 -154648467 + MER58B DNA MER1_type 4 337 -4 540 219 152 44 chr4 29643153 29643495 -154645167 + L1MC5 LINE L1 7547 7925 -36 511 249 200 24 chr4 29643911 29644116 -154644546 - MIR SINE MIR 0 262 22 408 304 88 11 chr4 29644491 29644672 -154643990 - LTR16A LTR ERVL -6 444 250 187 344 0 16 chr4 29644867 29644928 -154643734 - L2 LINE L2 -526 2788 2729 509 226 73 37 chr4 29644980 29645144 -154643518 - L2 LINE L2 -2 3311 3142 396 240 260 0 chr4 29645158 29645304 -154643358 + MER5A DNA MER1_type 4 187 -2 1557 213 76 126 chr4 29645353 29646266 -154642396 - L2 LINE L2 -226 3087 2223 394 302 127 21 chr4 29646713 29646902 -154641760 - MIR SINE MIR -4 258 50 32 26 0 0 chr4 29647289 29647328 -154641334 + AT_rich Low_complexity Low_complexity 1 39 0 29 28 0 0 chr4 29648275 29648311 -154640351 + AT_rich Low_complexity Low_complexity 1 36 0 246 222 0 0 chr4 29649792 29649846 -154638816 + MER103 DNA DNA 48 101 -65 1108 149 85 0 chr4 29650495 29650696 -154637966 - MER20 DNA MER1_type -1 218 1 810 145 8 0 chr4 29654105 29654222 -154634440 - AluJb SINE Alu -194 118 1 544 271 159 62 chr4 29654840 29655546 -154633116 + L2 LINE L2 2521 3283 -30 316 135 37 0 chr4 29655658 29655722 -154632940 + FLAM SINE Alu 63 107 -26 21 82 0 0 chr4 29655772 29655821 -154632841 + AT_rich Low_complexity Low_complexity 1 49 0 1752 107 8 4 chr4 29656607 29656849 -154631813 + AluSx SINE Alu 1 243 -69 680 59 0 0 chr4 29656849 29656934 -154631728 - AluSq/x SINE Alu -204 108 24 714 266 62 17 chr4 29660126 29660369 -154628293 + MIR SINE MIR 6 256 -6 1861 154 3 35 chr4 29661099 29661418 -154627244 + AluJb SINE Alu 1 309 -3 711 197 0 16 chr4 29661465 29661587 -154627075 + FLAM_A SINE Alu 2 121 -12 297 0 0 0 chr4 29661587 29661620 -154627042 + (TG)n Simple_repeat Simple_repeat 2 34 0 254 311 68 0 chr4 29661723 29661797 -154626865 - L2 LINE L2 -1 3271 3193 15728 128 10 2 chr4 29662093 29665489 -154623173 + L1PA10 LINE L1 2746 6155 -13 828 110 0 25 chr4 29665617 29665735 -154622927 + FLAM_C SINE Alu 14 128 -15 27 0 0 0 chr4 29665735 29665762 -154622900 + AT_rich Low_complexity Low_complexity 1 27 0 226 309 4 64 chr4 29666036 29666147 -154622515 + MER5A DNA MER1_type 1 116 -73 216 257 276 19 chr4 29666450 29666555 -154622107 + L2 LINE L2 3182 3313 0 2063 95 4 0 chr4 29666651 29666915 -154621747 - AluSc SINE Alu -9 300 36 225 357 38 38 chr4 29666915 29667100 -154621562 - L2 LINE L2 -605 2709 2525 473 279 201 5 chr4 29667712 29667916 -154620746 + MIR SINE MIR 3 246 -16 349 225 34 0 chr4 29668028 29668117 -154620545 + L2 LINE L2 1912 2003 -1311 1621 199 10 0 chr4 29668117 29668413 -154620249 - MER2 DNA MER2_type 0 345 47 2258 225 190 26 chr4 29668428 29669261 -154619401 + L2 LINE L2 2015 3065 -248 2165 113 0 0 chr4 29669261 29669554 -154619108 + AluSx SINE Alu 1 293 -19 2258 225 190 26 chr4 29669554 29669830 -154618832 + L2 LINE L2 3065 3295 -18 1323 173 72 36 chr4 29670463 29670899 -154617763 - L1ME1 LINE L1 -6 6160 5342 2153 83 45 3 chr4 29671325 29671613 -154617049 + AluSg SINE Alu 1 300 -10 521 145 65 16 chr4 29672466 29672590 -154616072 + L1MA8 LINE L1 6150 6279 -12 238 276 29 57 chr4 29672703 29672808 -154615854 - MIR SINE MIR -6 256 155 985 263 219 19 chr4 29674018 29674689 -154613973 + L2 LINE L2 2489 3308 -5 28 79 0 0 chr4 29675017 29675080 -154613582 + AT_rich Low_complexity Low_complexity 1 63 0 425 278 116 37 chr4 29675174 29675337 -154613325 + MIR SINE MIR 28 214 -48 2631 46 0 3 chr4 29675337 29675643 -154613019 + AluY SINE Alu 1 305 -6 425 278 116 37 chr4 29675643 29675695 -154612967 + MIR SINE MIR 214 260 -2 1206 157 9 9 chr4 29675894 29676123 -154612539 + L1MA4A LINE L1 6063 6291 -12 1645 159 10 30 chr4 29676330 29676632 -154612030 - AluY SINE Alu -15 296 1 458 254 33 16 chr4 29677198 29677320 -154611342 + MLT1K LTR MaLR 465 588 0 517 271 141 17 chr4 29677616 29677793 -154610869 - L2 LINE L2 0 3313 3115 495 216 39 20 chr4 29677795 29677948 -154610714 - MER104 DNA Tc2 -18 162 7 1712 151 68 4 chr4 29677990 29678268 -154610394 + AluJb SINE Alu 1 296 -16 438 329 96 10 chr4 29678473 29678728 -154609934 - L2 LINE L2 -271 3042 2750 22 103 0 0 chr4 29679539 29679617 -154609045 + AT_rich Low_complexity Low_complexity 1 78 0 24 0 0 0 chr4 29681875 29681899 -154606763 + AT_rich Low_complexity Low_complexity 1 24 0 2554 42 0 13 chr4 29683687 29683994 -154604668 + AluY SINE Alu 1 303 -8 2352 83 0 13 chr4 29684317 29684630 -154604032 + AluY SINE Alu 1 309 -2 513 207 44 30 chr4 29685066 29685238 -154603424 + MLT1F LTR MaLR 13 198 -351 * 623 227 81 22 chr4 29685232 29685417 -154603245 + MLT1F LTR MaLR 347 542 0 2324 72 0 3 chr4 29685434 29685739 -154602923 - AluY SINE Alu -7 304 1 577 116 21 0 chr4 29685885 29685980 -154602682 - L1M4 LINE L1 -748 5436 5340 1692 174 3 10 chr4 29685981 29686274 -154602388 + AluJo SINE Alu 1 291 -21 746 239 75 43 chr4 29686361 29686549 -154602113 - MIR SINE MIR -49 213 20 756 234 87 64 chr4 29686950 29687197 -154601465 + MLT1K LTR MaLR 260 517 -71 2339 102 0 0 chr4 29687197 29687501 -154601161 - AluSg1 SINE Alu -5 304 1 756 234 87 64 chr4 29687501 29687565 -154601097 + MLT1K LTR MaLR 517 578 -10 825 158 23 0 chr4 29687604 29687737 -154600925 - FRAM SINE Alu -5 171 36 1480 182 22 4 chr4 29687824 29688093 -154600569 + AluJo SINE Alu 1 274 -38 1224 120 0 0 chr4 29688196 29688363 -154600299 + AluSg/x SINE Alu 129 295 -17 1662 253 37 6 chr4 29688639 29688669 -154599993 - L1ME1 LINE L1 0 6166 6138 2064 135 0 0 chr4 29688669 29688958 -154599704 - AluSg SINE Alu -21 289 1 1662 253 37 6 chr4 29688958 29689409 -154599253 - L1ME1 LINE L1 -28 6138 5670 1177 122 0 17 chr4 29689410 29689582 -154599080 - AluSg/x SINE Alu -9 301 133 1230 228 56 0 chr4 29689582 29689885 -154598777 - L1ME1 LINE L1 -475 5691 5372 1455 201 101 16 chr4 29689932 29690342 -154598320 - MER114 LTR ERV -76 572 123 1973 133 38 62 chr4 29690342 29690742 -154597920 - MLT1B LTR MaLR 0 390 1 1455 201 101 16 chr4 29690742 29690759 -154597903 - MER114 LTR ERV -525 123 109 298 208 134 59 chr4 29690999 29691201 -154597461 - L1ME4a LINE L1 -2 6119 5903 305 158 48 26 chr4 29691217 29691307 -154597355 - L1MA9 LINE L1 -24 6267 6169 1078 137 11 0 chr4 29691382 29691557 -154597105 + AluSq SINE Alu 137 313 0 2261 116 0 0 chr4 29692211 29692513 -154596149 - AluSx SINE Alu -10 302 1 249 108 0 0 chr4 29692516 29692553 -154596109 + (TTC)n Simple_repeat Simple_repeat 2 38 0 25 51 0 0 chr4 29693569 29693608 -154595054 + AT_rich Low_complexity Low_complexity 1 39 0 2061 117 0 13 chr4 29693946 29694254 -154594408 + AluSx SINE Alu 1 304 -8 275 0 29 0 chr4 29694944 29694979 -154593683 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 243 241 113 120 chr4 29695356 29695622 -154593040 + L2 LINE L2 3050 3313 0 1857 253 64 19 chr4 29695636 29696213 -154592449 + LTR26 LTR ERV1 1 603 0 1623 171 146 22 chr4 29696340 29696709 -154591953 - MER63B DNA MER1_type -21 415 1 281 288 198 27 chr4 29696798 29696909 -154591753 + L2 LINE L2 3137 3266 -6 281 298 79 0 chr4 29697573 29697687 -154590975 - MIR SINE MIR -71 191 69 277 219 16 31 chr4 29697687 29697751 -154590911 + MLT1L LTR MaLR 1 63 -552 869 175 0 25 chr4 29697813 29697973 -154590689 - AluJb SINE Alu -19 293 138 472 289 41 91 chr4 29698008 29698350 -154590312 + MLT1L LTR MaLR 197 521 -94 2133 99 7 26 chr4 29698408 29698712 -154589950 - AluSx SINE Alu -14 298 1 1357 224 62 9 chr4 29698750 29699089 -154589573 + L1ME3 LINE L1 5581 5937 -225 516 102 20 61 chr4 29699092 29699190 -154589472 + THE1C LTR MaLR 199 292 -83 864 214 43 51 chr4 29699465 29699699 -154588963 + L1ME3 LINE L1 5925 6156 -6 486 254 77 86 chr4 29699786 29699931 -154588731 - MIR SINE MIR -49 213 69 2137 130 3 3 chr4 29699931 29700230 -154588432 - AluSx SINE Alu -13 299 1 486 254 77 86 chr4 29700230 29700293 -154588369 - MIR SINE MIR -193 69 7 875 153 0 29 chr4 29700400 29700537 -154588125 + FLAM_C SINE Alu 1 133 0 389 264 166 5 chr4 29700572 29700765 -154587897 + L1ME4a LINE L1 5684 5907 -214 1923 199 5 5 chr4 29700849 29701251 -154587411 - L1PB1 LINE L1 -1640 4506 4105 * 6636 134 6 2 chr4 29701250 29702879 -154585783 + L1PB1 LINE L1 4520 6151 0 258 279 93 16 chr4 29703104 29703233 -154585429 + L1ME4a LINE L1 5967 6105 -16 388 230 206 8 chr4 29703555 29703681 -154584981 - MER5B DNA MER1_type -2 176 26 329 269 74 67 chr4 29704308 29704457 -154584205 - MIR SINE MIR -106 156 7 240 111 0 0 chr4 29705177 29705213 -154583449 + (TCCA)n Simple_repeat Simple_repeat 2 37 0 247 227 173 40 chr4 29705427 29705577 -154583085 + L1ME4a LINE L1 5947 6116 -5 1737 167 3 7 chr4 29705725 29706007 -154582655 + AluJo SINE Alu 1 281 -31 447 68 0 0 chr4 29706018 29706033 -154582629 + (CA)n Simple_repeat Simple_repeat 1 74 0 447 68 0 0 chr4 29706033 29706092 -154582570 + (CA)n Simple_repeat Simple_repeat 2 60 0 2505 151 5 3 chr4 29706160 29706550 -154582112 + MER89 LTR ERV1 167 557 -2 2078 135 7 0 chr4 29706711 29707014 -154581648 - AluSx SINE Alu -7 305 1 196 194 0 0 chr4 29707179 29707215 -154581447 + L2 LINE L2 3195 3230 -83 343 280 182 15 chr4 29707576 29707708 -154580954 + MIR SINE MIR 39 192 -70 1706 156 36 26 chr4 29707737 29708143 -154580519 + MER89 LTR ERV1 2 510 -49 4974 241 58 65 chr4 29708148 29709815 -154578847 + MER89-int LTR ERV1 1 1654 -5147 1658 197 67 11 chr4 29709855 29710230 -154578432 + MER89-int LTR ERV1 1650 2045 -4756 1473 214 84 49 chr4 29710231 29710601 -154578061 + MSTD LTR MaLR 1 383 -13 2173 226 39 22 chr4 29710604 29711095 -154577567 + MER89-int LTR ERV1 2033 2531 -4270 362 326 39 34 chr4 29711151 29711384 -154577278 + MER89-int LTR ERV1 139 372 -4275 2377 219 71 56 chr4 29711493 29712137 -154576525 + MER89-int LTR ERV1 2603 3256 -3545 1465 122 0 0 chr4 29712155 29712351 -154576311 + AluSg/x SINE Alu 88 283 -27 26 0 0 0 chr4 29712351 29712377 -154576285 + AT_rich Low_complexity Low_complexity 1 26 0 203 266 47 16 chr4 29712576 29712640 -154576022 + MER5A DNA MER1_type 124 189 0 2249 96 0 10 chr4 29713153 29713454 -154575208 + AluSq SINE Alu 1 298 -15 2145 253 53 42 chr4 29713474 29714459 -154574203 + L1M4 LINE L1 2204 3199 -2947 589 306 105 54 chr4 29714492 29715011 -154573651 + L2 LINE L2 2550 3123 -149 2113 128 3 0 chr4 29715011 29715308 -154573354 - AluSx SINE Alu -13 299 2 589 306 105 54 chr4 29715308 29715464 -154573198 + L2 LINE L2 3123 3270 -2 300 328 38 23 chr4 29716279 29716410 -154572252 + MIR SINE MIR 22 154 -108 3314 117 54 14 chr4 29716858 29717378 -154571284 - LTR38B LTR ERV1 -12 598 58 611 256 19 25 chr4 29718574 29718734 -154569928 + MIR SINE MIR 15 173 -89 1898 143 3 7 chr4 29718772 29719065 -154569597 + AluJo SINE Alu 1 292 -20 778 278 78 46 chr4 29719275 29719386 -154569276 + MLT1H LTR MaLR 123 229 -320 1875 177 55 3 chr4 29719386 29719713 -154568949 + MER2 DNA MER2_type 1 344 0 778 278 78 46 chr4 29719713 29720011 -154568651 + MLT1H LTR MaLR 229 545 -4 188 228 18 0 chr4 29720185 29720242 -154568420 + CT-rich Low_complexity Low_complexity 3 60 0 368 276 199 6 chr4 29720332 29720488 -154568174 + MER5A DNA MER1_type 3 188 -1 246 32 0 0 chr4 29720670 29720701 -154567961 + (TG)n Simple_repeat Simple_repeat 2 32 0 2041 134 3 3 chr4 29721287 29721586 -154567076 - AluJb SINE Alu -13 299 1 1132 227 174 8 chr4 29721957 29722122 -154566540 + L1MD2 LINE L1 5944 6080 -279 234 0 0 0 chr4 29722122 29722148 -154566514 + (CA)n Simple_repeat Simple_repeat 1 26 0 1132 227 174 8 chr4 29722148 29722339 -154566323 + L1MD2 LINE L1 6080 6359 0 1517 129 43 56 chr4 29722344 29722646 -154566016 + AluSx SINE Alu 1 298 -14 346 318 45 19 chr4 29723232 29723386 -154565276 + MER5A DNA MER1_type 9 166 -23 * 510 293 18 18 chr4 29723253 29723417 -154565245 - MER5A DNA MER1_type -22 167 4 192 77 0 0 chr4 29724507 29724533 -154564129 + (A)n Simple_repeat Simple_repeat 1 26 0 683 183 0 0 chr4 29724540 29724644 -154564018 + FLAM_A SINE Alu 21 124 -18 189 263 0 0 chr4 29724773 29724830 -154563832 - MIR SINE MIR -42 220 164 214 174 22 22 chr4 29724932 29724978 -154563684 - MIR SINE MIR -62 146 101 506 216 140 77 chr4 29725304 29725526 -154563136 + MLT1C LTR MaLR 5 240 -227 826 169 8 0 chr4 29725616 29725746 -154562916 + AluSg SINE Alu 1 131 -179 290 306 41 20 chr4 29726127 29726225 -154562437 - L2 LINE L2 0 3313 3214 1961 168 43 27 chr4 29726806 29727175 -154561487 + THE1C LTR MaLR 1 375 0 242 252 67 59 chr4 29728107 29728226 -154560436 - MER20 DNA MER1_type -18 201 82 918 150 13 7 chr4 29728452 29728605 -154560057 + FRAM SINE Alu 1 150 -26 339 248 111 0 chr4 29728648 29728765 -154559897 + MIR SINE MIR 48 177 -85 841 256 8 23 chr4 29729039 29729305 -154559357 + L1ME2 LINE L1 4936 5197 -949 1229 247 11 96 chr4 29729347 29729439 -154559223 + L1ME2 LINE L1 5743 5841 -323 2121 112 17 17 chr4 29729439 29729735 -154558927 + AluSx SINE Alu 3 298 -14 2397 94 0 0 chr4 29729735 29730033 -154558629 + AluSg SINE Alu 1 298 -12 1229 247 11 96 chr4 29730033 29730208 -154558454 + L1ME2 LINE L1 5840 5960 -204 1946 163 3 3 chr4 29730208 29730509 -154558153 + AluJb SINE Alu 1 301 -11 1229 247 11 96 chr4 29730509 29730688 -154557974 + L1ME2 LINE L1 5960 6153 -11 1449 178 82 4 chr4 29731015 29731296 -154557366 - AluJb SINE Alu -9 303 1 1748 138 55 38 chr4 29731720 29732010 -154556652 + AluSx SINE Alu 1 295 -17 306 50 0 0 chr4 29733680 29733720 -154554942 + (CA)n Simple_repeat Simple_repeat 2 41 0 307 340 61 14 chr4 29733780 29733927 -154554735 + MIR3 SINE MIR 7 160 -48 * 337 346 68 92 chr4 29733925 29734217 -154554445 - L2 LINE L2 0 3272 2988 5679 136 23 32 chr4 29734291 29734878 -154553784 - MER4D LTR ERV1 0 903 312 1849 148 3 20 chr4 29734878 29735175 -154553487 + AluJb SINE Alu 9 300 -12 2127 107 37 3 chr4 29735177 29735476 -154553186 + AluSq SINE Alu 1 309 -4 5679 136 23 32 chr4 29735476 29735796 -154552866 - MER4D LTR ERV1 -592 311 1 2942 133 25 11 chr4 29735796 29736270 -154552392 - LTR29 LTR ERV1 -5 617 137 528 327 20 39 chr4 29736448 29736702 -154551960 + MLT1L LTR MaLR 8 256 -359 2856 179 56 6 chr4 29736705 29737225 -154551437 - MER21A LTR ERV1 -14 917 372 1116 169 56 60 chr4 29737223 29737489 -154551173 - MER21A LTR ERV1 -666 265 1 * 1955 139 52 3 chr4 29737489 29737796 -154550866 + MLT2C1 LTR ERVL 25 346 -51 281 74 463 0 chr4 29737797 29737851 -154550811 - MADE1 DNA Mariner -1 79 1 270 344 79 16 chr4 29737912 29738101 -154550561 - L2 LINE L2 -437 2877 2677 1308 110 105 5 chr4 29738103 29738312 -154550350 + MER30 DNA MER1_type 1 230 0 1346 300 50 37 chr4 29738349 29738943 -154549719 + MLT1L LTR MaLR 8 609 -6 362 322 34 7 chr4 29738950 29739096 -154549566 - L2 LINE L2 -656 2658 2509 1778 192 92 32 chr4 29739982 29740267 -154548395 + MLT1C LTR MaLR 5 272 -195 1968 129 81 31 chr4 29740267 29740624 -154548038 - THE1C LTR MaLR 0 375 1 10541 120 13 55 chr4 29740625 29741704 -154546958 - THE1C-int LTR MaLR -1 1579 593 1905 100 8 8 chr4 29741704 29741963 -154546699 - AluSp SINE Alu -1 312 54 10541 120 13 55 chr4 29741963 29742530 -154546132 - THE1C-int LTR MaLR -987 593 3 1890 110 99 71 chr4 29742532 29742602 -154546060 - THE1C LTR MaLR 0 375 308 2086 124 7 20 chr4 29742602 29742900 -154545762 - AluSx SINE Alu -18 294 1 1890 110 99 71 chr4 29742900 29743194 -154545468 - THE1C LTR MaLR -67 308 1 1778 192 92 32 chr4 29743194 29743340 -154545322 + MLT1C LTR MaLR 272 467 0 1860 153 3 7 chr4 29743508 29743796 -154544866 - AluJb SINE Alu -25 287 1 36 62 0 0 chr4 29743907 29743971 -154544691 + AT_rich Low_complexity Low_complexity 1 64 0 180 311 0 0 chr4 29744079 29744124 -154544538 + L2 LINE L2 3213 3257 -15 526 266 8 31 chr4 29744361 29744489 -154544173 + MIR SINE MIR 25 149 -113 1183 124 0 0 chr4 29744756 29744937 -154543725 + AluSq SINE Alu 131 311 0 2185 136 0 132 chr4 29744982 29745481 -154543181 - Tigger2a DNA MER2_type -1 433 1 1422 197 114 57 chr4 29745537 29745706 -154542956 + MER110A LTR ERV1 22 180 -288 930 153 0 0 chr4 29745706 29745837 -154542825 + FLAM_C SINE Alu 1 131 -2 1422 197 114 57 chr4 29745837 29746088 -154542574 + MER110A LTR ERV1 180 466 -2 3081 167 65 0 chr4 29746101 29746627 -154542035 + MER68 LTR ERV1 3 562 0 282 378 91 0 chr4 29746987 29747130 -154541532 - L2 LINE L2 -206 3066 2911 554 283 47 33 chr4 29747343 29747468 -154541194 + MIR SINE MIR 13 144 -118 3220 69 0 0 chr4 29747468 29747843 -154540819 - THE1C LTR MaLR 0 375 1 554 283 47 33 chr4 29747843 29747929 -154540733 + MIR SINE MIR 144 227 -35 987 209 0 71 chr4 29748371 29748596 -154540066 + AluJo SINE Alu 3 211 -101 1658 191 17 0 chr4 29748699 29748993 -154539669 + AluJo SINE Alu 1 299 -13 767 196 38 119 chr4 29749193 29749484 -154539178 - MLT1D LTR MaLR -170 297 25 869 159 0 14 chr4 29749505 29749650 -154539012 + FLAM_C SINE Alu 1 143 0 880 198 12 77 chr4 29749692 29749940 -154538722 - LTR4 LTR ERV1 0 596 365 712 258 85 74 chr4 29750052 29750405 -154538257 - LTR4 LTR ERV1 -239 357 1 717 202 0 0 chr4 29750412 29750536 -154538126 + FRAM SINE Alu 41 164 -12 1418 110 19 0 chr4 29750726 29750935 -154537727 + LTR24C LTR ERV1 1 213 -422 * 2524 90 8 31 chr4 29750931 29751286 -154537376 - THE1B LTR MaLR -17 347 1 2090 139 82 31 chr4 29751286 29751639 -154537023 + LTR24C LTR ERV1 225 601 -34 2149 133 7 0 chr4 29751639 29751941 -154536721 + AluSx SINE Alu 1 304 -8 2090 139 82 31 chr4 29751941 29751976 -154536686 + LTR24C LTR ERV1 601 633 -2 207 296 61 76 chr4 29752084 29752216 -154536446 + L2 LINE L2 2925 3054 -218 502 263 43 62 chr4 29752499 29752708 -154535954 + MER21B LTR ERV1 508 712 -151 444 317 48 0 chr4 29752733 29752900 -154535762 + Charlie2b DNA MER1_type 233 407 -2455 322 242 0 0 chr4 29752923 29752989 -154535673 + Charlie2b DNA MER1_type 575 640 -2142 1237 209 92 31 chr4 29753017 29753103 -154535559 + Charlie2a DNA MER1_type 1466 1545 -1317 1522 176 23 33 chr4 29753103 29753404 -154535258 - AluJo SINE Alu -14 298 1 1237 209 92 31 chr4 29753404 29754014 -154534648 + Charlie2a DNA MER1_type 1545 2267 -595 2224 263 35 45 chr4 29754046 29755127 -154533535 + L1ME LINE L1 59 1127 -4953 2822 118 25 9 chr4 29755127 29755558 -154533104 + MER57-int LTR ERV1 3165 3602 -3935 2407 201 113 35 chr4 29755558 29756224 -154532438 - MER50 LTR ERV1 0 734 17 781 81 57 0 chr4 29756238 29756361 -154532301 + MER57-int LTR ERV1 3600 3729 -3808 1063 261 61 52 chr4 29756375 29756756 -154531906 + L1ME LINE L1 1174 1550 -4711 1987 145 60 23 chr4 29756756 29757107 -154531555 - THE1B LTR MaLR 0 364 1 1063 261 61 52 chr4 29757107 29757463 -154531199 + L1ME LINE L1 1550 1956 -4305 2175 125 7 0 chr4 29757463 29757760 -154530902 + AluSq SINE Alu 1 299 -14 1063 261 61 52 chr4 29757760 29757964 -154530698 + L1ME LINE L1 1956 2157 -4104 1351 108 0 6 chr4 29757970 29758146 -154530516 + AluSq SINE Alu 1 175 -138 1973 152 43 137 chr4 29758146 29758751 -154529911 - LTR34 LTR ERV1 -151 548 1 914 240 131 3 chr4 29758751 29758822 -154529840 + L1ME LINE L1 2825 2886 -3194 1541 182 6 59 chr4 29758822 29759146 -154529516 + AluJo SINE Alu 1 307 -5 914 240 131 3 chr4 29759146 29759432 -154529230 + L1ME LINE L1 2886 3228 -2852 221 202 173 0 chr4 29759435 29759539 -154529123 - L2 LINE L2 -76 3237 3116 186 43 0 0 chr4 29759723 29759746 -154528916 + (CCG)n Simple_repeat Simple_repeat 2 24 0 669 137 16 48 chr4 29761684 29761808 -154526854 + FLAM_C SINE Alu 8 127 -16 22 0 0 0 chr4 29761938 29761960 -154526702 + AT_rich Low_complexity Low_complexity 1 22 0 271 57 0 170 chr4 29761962 29762051 -154526611 + Alu SINE Alu 239 318 0 2126 110 0 10 chr4 29762064 29762355 -154526307 + AluSx SINE Alu 5 292 -20 278 328 86 0 chr4 29763029 29763145 -154525517 - MIR SINE MIR 0 262 137 1834 128 53 0 chr4 29763186 29763452 -154525210 - AluSq SINE Alu -33 280 1 358 125 0 0 chr4 29763482 29763530 -154525132 + Alu SINE Alu 1 48 -254 926 148 0 56 chr4 29763534 29763696 -154524966 + FRAM SINE Alu 12 164 -12 193 179 8 0 chr4 29763696 29763738 -154524924 - MIR SINE MIR -89 119 75 6882 93 182 50 chr4 29764227 29766472 -154522190 - Harlequin LTR ERV1 0 8399 505 839 155 22 84 chr4 29766470 29766792 -154521870 - Harlequin LTR ERV1 -5755 1141 840 * 36278 80 35 5 chr4 29766793 29771576 -154517086 - Harlequin LTR ERV1 -3455 4944 17 329 100 140 0 chr4 29771576 29771599 -154517063 - Harlequin LTR ERV1 -8331 68 39 4305 101 217 102 chr4 29771599 29772965 -154515697 - pTR5 LTR ERV1 0 2438 172 253 311 53 99 chr4 29773166 29773449 -154515213 - L2 LINE L2 -6 3266 2997 1982 151 7 0 chr4 29773502 29773793 -154514869 - AluJo SINE Alu -15 297 5 323 245 99 80 chr4 29774093 29774305 -154514357 - L2 LINE L2 -6 3307 3092 9974 65 13 62 chr4 29774607 29776047 -154512615 - SVA Other Other -3 1383 14 1765 106 12 4 chr4 29776057 29776313 -154512349 + L1PA12 LINE L1 5808 6065 -103 389 78 0 0 chr4 29776342 29776393 -154512269 + U2 snRNA snRNA 1 51 -137 693 84 84 0 chr4 29776393 29776500 -154512162 + L1PA13 LINE L1 6048 6163 0 1410 218 77 20 chr4 29776506 29776947 -154511715 - L2 LINE L2 -625 2689 2224 396 250 8 16 chr4 29777001 29777125 -154511537 - L2 LINE L2 -1845 1469 1347 1082 264 138 9 chr4 29777125 29777568 -154511094 - L2 LINE L2 -2091 1223 724 2178 94 3 10 chr4 29777607 29777930 -154510732 - AluSq SINE Alu 0 321 1 1729 156 7 20 chr4 29778414 29778716 -154509946 - AluJo SINE Alu -14 298 1 2002 107 43 0 chr4 29779583 29779863 -154508799 - AluSx SINE Alu -20 292 1 318 326 92 0 chr4 29779992 29780133 -154508529 - L2 LINE L2 0 3313 3160 2517 63 3 0 chr4 29780216 29780516 -154508146 - AluY SINE Alu -10 301 1 691 209 0 15 chr4 29781434 29781568 -154507094 - FLAM_A SINE Alu -1 132 1 507 174 0 31 chr4 29781617 29781715 -154506947 - AluJb SINE Alu -81 231 137 1727 185 24 0 chr4 29781725 29782022 -154506640 - AluJb SINE Alu -8 304 1 1760 171 13 26 chr4 29782862 29783167 -154505495 - AluJb SINE Alu -11 301 1 303 234 203 0 chr4 29783167 29783295 -154505367 + MIR SINE MIR 97 250 -12 2219 108 7 7 chr4 29784019 29784315 -154504347 - AluSx SINE Alu -16 296 1 27 0 0 0 chr4 29784321 29784348 -154504314 + AT_rich Low_complexity Low_complexity 1 27 0 25 51 0 0 chr4 29784374 29784413 -154504249 + AT_rich Low_complexity Low_complexity 1 39 0 1307 86 27 16 chr4 29785431 29785617 -154503045 + MER30 DNA MER1_type 43 230 0 675 259 12 6 chr4 29785652 29785822 -154502840 + MER5A DNA MER1_type 19 189 0 451 222 19 0 chr4 29786030 29786138 -154502524 + MIR SINE MIR 147 256 -6 303 28 0 0 chr4 29786402 29786433 -154502229 + (CA)n Simple_repeat Simple_repeat 1 67 0 303 28 0 0 chr4 29786433 29786469 -154502193 + (CA)n Simple_repeat Simple_repeat 2 37 0 846 158 0 0 chr4 29786666 29786799 -154501863 - FLAM_C SINE Alu 0 133 1 639 191 191 0 chr4 29787429 29787617 -154501045 + L1ME2 LINE L1 5804 6027 -137 314 218 13 0 chr4 29787632 29787710 -154500952 + L1MA10 LINE L1 6247 6325 -9 560 153 0 0 chr4 29787806 29787891 -154500771 + AluJ/FLAM SINE Alu 2 86 -226 1116 162 0 0 chr4 29787980 29788147 -154500515 + AluJb SINE Alu 131 297 -15 1857 135 94 15 chr4 29788679 29789019 -154499643 - THE1C LTR MaLR 0 375 9 23 0 0 0 chr4 29789461 29789484 -154499178 + AT_rich Low_complexity Low_complexity 1 23 0 26 50 0 0 chr4 29789896 29789936 -154498726 + AT_rich Low_complexity Low_complexity 1 40 0 1971 143 3 10 chr4 29790382 29790683 -154497979 + AluJb SINE Alu 1 299 -13 2403 97 3 0 chr4 29790706 29791014 -154497648 + AluSq SINE Alu 1 309 -4 395 251 152 81 chr4 29791372 29791779 -154496883 - L1M4 LINE L1 -3235 2911 2476 989 161 6 12 chr4 29791980 29792141 -154496521 - AluJo SINE Alu -32 280 121 189 147 0 0 chr4 29792519 29792553 -154496109 + (T)n Simple_repeat Simple_repeat 1 34 0 236 228 53 0 chr4 29792665 29792722 -154495940 + L2 LINE L2 3213 3272 0 * 344 343 77 14 chr4 29792721 29793007 -154495655 - L2 LINE L2 -1147 2167 1864 849 174 0 0 chr4 29793201 29793333 -154495329 + FRAM SINE Alu 1 132 -44 909 191 0 13 chr4 29793733 29793885 -154494777 + FRAM SINE Alu 2 151 -15 2454 80 0 7 chr4 29795148 29795450 -154493212 + AluSq SINE Alu 1 300 -13 587 61 12 0 chr4 29795594 29795676 -154492986 - AluY SINE Alu -227 84 2 2314 113 0 6 chr4 29795996 29796307 -154492355 - AluSg SINE Alu -1 309 1 373 227 118 0 chr4 29796605 29796724 -154491938 - L2 LINE L2 0 3313 3181 21 0 0 0 chr4 29797498 29797519 -154491143 + AT_rich Low_complexity Low_complexity 1 21 0 1827 157 7 14 chr4 29797524 29797818 -154490844 + AluJb SINE Alu 3 294 -18 1063 181 0 16 chr4 29798182 29798370 -154490292 + FAM SINE Alu 1 49 0 1010 170 19 0 chr4 29798381 29798540 -154490122 + FRAM SINE Alu 1 162 -14 2030 119 0 30 chr4 29800464 29800766 -154487896 - AluSx SINE Alu -19 293 1 1710 121 8 20 chr4 29801117 29801398 -154487264 + AluSx SINE Alu 36 313 0 676 227 195 16 chr4 29801593 29801901 -154486761 + MLT1J2 LTR MaLR 67 429 -21 485 138 43 32 chr4 29802058 29802152 -154486510 + AluJ/FLAM SINE Alu 2 96 -216 1674 150 19 0 chr4 29802255 29802555 -154486107 + AluJo SINE Alu 13 317 0 807 155 9 0 chr4 29802684 29802800 -154485862 + FLAM_C SINE Alu 2 118 -25 279 79 0 0 chr4 29802800 29802838 -154485824 + (CAAT)n Simple_repeat Simple_repeat 1 38 0 833 249 24 19 chr4 29803270 29803479 -154485183 + L2 LINE L2 3104 3313 0 321 89 0 0 chr4 29803661 29803706 -154484956 + (TG)n Simple_repeat Simple_repeat 2 46 0 2407 108 0 0 chr4 29806061 29806367 -154482295 - AluSx SINE Alu -6 306 1 1705 149 43 11 chr4 29807350 29807632 -154481030 + AluJo SINE Alu 4 294 -18 892 121 0 8 chr4 29807635 29807759 -154480903 + FLAM_C SINE Alu 1 123 -20 249 232 0 0 chr4 29807799 29807855 -154480807 + L1ME2 LINE L1 4006 4061 -2085 1468 214 51 37 chr4 29807857 29808277 -154480385 - MLT1D LTR MaLR -1 504 88 2659 210 105 50 chr4 29808331 29809414 -154479248 + L1ME2 LINE L1 4058 5293 -885 1895 136 36 0 chr4 29809414 29809693 -154478969 + AluSx SINE Alu 1 289 -23 2659 210 105 50 chr4 29809693 29809844 -154478818 + L1ME2 LINE L1 5293 5434 -744 1389 215 123 12 chr4 29809848 29810253 -154478409 + L1ME2 LINE L1 5594 6043 -121 3554 118 2 29 chr4 29810253 29810771 -154477891 - L1PA10 LINE L1 -9 6474 5971 2344 73 0 10 chr4 29810772 29811075 -154477587 + AluY SINE Alu 1 300 -11 22410 177 14 17 chr4 29811184 29815103 -154473559 - L1PA10 LINE L1 -1251 5210 1287 180 77 0 0 chr4 29815103 29815129 -154473533 + (TTG)n Simple_repeat Simple_repeat 2 27 0 22410 177 14 17 chr4 29815129 29815724 -154472938 - L1PA10 LINE L1 -5174 1287 692 908 234 15 54 chr4 29815732 29815993 -154472669 - L1PA10 LINE L1 -5366 509 259 808 198 115 10 chr4 29816428 29816620 -154472042 - L1PA10 LINE L1 -5656 219 8 323 266 50 0 chr4 29816619 29816738 -154471924 + L1ME1 LINE L1 6037 6164 -6 * 1477 179 0 12 chr4 29816794 29817084 -154471578 - AluJb SINE Alu 0 312 43 642 299 15 20 chr4 29817151 29817355 -154471307 + L1ME3A LINE L1 5681 5883 -287 1661 154 7 25 chr4 29817581 29817885 -154470777 + AluJb SINE Alu 9 307 0 1489 139 5 0 chr4 29817898 29818114 -154470548 + AluSg/x SINE Alu 85 301 -11 1759 151 148 20 chr4 29818300 29818644 -154470018 - MLT1B LTR MaLR -2 388 1 2134 109 0 55 chr4 29819451 29819780 -154468882 - AluSx SINE Alu -1 311 1 303 283 90 0 chr4 29819850 29819995 -154468667 - L1MC5 LINE L1 -542 7419 7262 4652 153 72 30 chr4 29820255 29820339 -154468323 - L1MA9 LINE L1 -22 6290 6211 234 0 0 0 chr4 29820339 29820365 -154468297 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 2115 102 29 0 chr4 29820365 29820639 -154468023 - AluSx SINE Alu -30 282 1 4652 153 72 30 chr4 29820639 29820672 -154467990 - L1MA9 LINE L1 -101 6211 6181 315 0 0 0 chr4 29820672 29820707 -154467955 + (TG)n Simple_repeat Simple_repeat 2 36 0 4652 153 72 30 chr4 29820707 29820749 -154467913 - L1MA9 LINE L1 -131 6181 6142 1707 201 0 10 chr4 29820749 29821063 -154467599 - AluJo SINE Alu -1 311 1 4652 153 72 30 chr4 29821063 29821093 -154467569 - L1MA9 LINE L1 -170 6142 6115 1714 189 3 25 chr4 29821093 29821411 -154467251 + AluJb SINE Alu 2 312 0 4652 153 72 30 chr4 29821411 29822693 -154465969 - L1MA9 LINE L1 -197 6115 4758 22 0 0 0 chr4 29822916 29822938 -154465724 + AT_rich Low_complexity Low_complexity 1 22 0 265 302 82 40 chr4 29823200 29823351 -154465311 + MIR SINE MIR 34 192 -67 2532 59 0 3 chr4 29824671 29824975 -154463687 - AluY SINE Alu -8 303 1 321 327 88 9 chr4 29824995 29825026 -154463636 - MIR SINE MIR -26 236 209 1499 261 54 56 chr4 29825026 29825544 -154463118 + LTR33 LTR ERVL 5 521 0 321 327 88 9 chr4 29825544 29825729 -154462933 - MIR SINE MIR -53 209 3 382 187 166 0 chr4 29825773 29825912 -154462750 - MER20B DNA MER1_type -30 753 592 571 236 81 0 chr4 29825913 29826036 -154462626 + MER7C DNA MER2_type 2 134 -468 953 226 3 132 chr4 29826036 29826354 -154462308 - AluSp SINE Alu -9 304 28 2944 135 11 19 chr4 29826354 29826829 -154461833 + MER7C DNA MER2_type 131 601 -1 2480 52 0 29 chr4 29826971 29827280 -154461382 - AluY SINE Alu -11 300 1 255 247 68 96 chr4 29827638 29827784 -154460878 + MLT1H LTR MaLR 406 547 -2 * 1409 256 97 11 chr4 29827784 29828228 -154460434 - MER20B DNA MER1_type -275 508 27 186 302 136 84 chr4 29828308 29828349 -154460313 - L2 LINE L2 -4 3268 3231 1579 156 28 45 chr4 29828349 29828637 -154460025 - AluJb SINE Alu -18 294 12 186 302 136 84 chr4 29828637 29828903 -154459759 - L2 LINE L2 -41 3231 2945 822 215 47 33 chr4 29829031 29829245 -154459417 - MIR SINE MIR -1 261 45 266 153 0 83 chr4 29829498 29829570 -154459092 + Charlie5 DNA MER1_type 2544 2609 -3 490 88 0 0 chr4 29829570 29829638 -154459024 - L1PB4 LINE L1 0 6156 6089 597 202 65 73 chr4 29829755 29829806 -154458856 - MLT1J LTR MaLR -22 489 439 2376 65 24 0 chr4 29829806 29830097 -154458565 - AluY SINE Alu -13 298 1 2172 122 3 6 chr4 29830097 29830408 -154458254 - AluSx SINE Alu -2 310 1 597 202 65 73 chr4 29830408 29830642 -154458020 - MLT1J LTR MaLR -70 441 166 386 199 160 51 chr4 29830652 29830808 -154457854 + LTR16A1 LTR ERVL 165 337 -120 719 196 119 55 chr4 29830843 29831078 -154457584 - MLT1C LTR MaLR -165 302 53 2138 123 3 3 chr4 29831135 29831435 -154457227 - AluSx SINE Alu -7 305 6 432 0 0 0 chr4 29831495 29831543 -154457119 + (CA)n Simple_repeat Simple_repeat 2 49 0 699 231 122 31 chr4 29832321 29832550 -154456112 - MLT1K LTR MaLR -1 587 338 423 275 78 78 chr4 29832660 29832846 -154455816 + MLT1H LTR MaLR 133 321 -228 1101 31 78 0 chr4 29832846 29832974 -154455688 - MER85 DNA T2_type -1 138 1 423 275 78 78 chr4 29832974 29833005 -154455657 + MLT1H LTR MaLR 320 350 -199 290 231 26 26 chr4 29833191 29833269 -154455393 - MLT1K LTR MaLR -477 111 34 2163 112 0 22 chr4 29833422 29833735 -154454927 + AluSg SINE Alu 3 308 -2 1360 179 108 54 chr4 29833826 29834251 -154454411 - LTR7 LTR ERV1 -2 448 1 242 226 19 0 chr4 29834892 29834945 -154453717 - MER4D LTR ERV1 -72 800 747 889 241 34 30 chr4 29835271 29835536 -154453126 - L1M4 LINE L1 -1380 4766 4501 2459 64 0 49 chr4 29835537 29835864 -154452798 - AluY SINE Alu 0 311 1 845 144 0 0 chr4 29835900 29836025 -154452637 - FLAM_C SINE Alu -18 125 1 834 220 57 40 chr4 29836030 29836326 -154452336 - L1M4 LINE L1 -1663 4483 4183 1457 156 42 26 chr4 29837596 29837903 -154450759 + AluJb SINE Alu 1 312 0 1670 207 23 20 chr4 29838430 29838783 -154449879 - MLT1A1 LTR MaLR -11 354 1 354 212 92 13 chr4 29839005 29839141 -154449521 - L1M2 LINE L1 -358 5816 5666 4891 176 34 6 chr4 29839497 29839704 -154448958 - L1MB4 LINE L1 -1 6179 5979 1790 161 3 25 chr4 29839704 29840020 -154448642 - AluJo SINE Alu -3 309 1 4891 176 34 6 chr4 29840020 29840924 -154447738 - L1MB4 LINE L1 -201 5979 5040 317 333 74 0 chr4 29841133 29841268 -154447394 + MER117 DNA MER1_type 5 149 -48 2166 121 23 0 chr4 29841431 29841736 -154446926 + AluSx SINE Alu 1 312 0 243 282 230 0 chr4 29841741 29841915 -154446747 - MIR SINE MIR -17 245 32 222 37 0 0 chr4 29842655 29842682 -154445980 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 2589 49 0 7 chr4 29842814 29843122 -154445540 + AluY SINE Alu 1 306 -5 930 210 19 15 chr4 29844633 29844838 -154443824 - HsTC2 DNA Tc2 -1298 600 395 296 148 20 40 chr4 29844860 29844961 -154443701 + CT-rich Low_complexity Low_complexity 1 99 0 1116 197 167 23 chr4 29844963 29845083 -154443579 - AluJo SINE Alu 0 302 201 180 0 0 0 chr4 29845083 29845103 -154443559 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2186 96 0 0 chr4 29845103 29845384 -154443278 - AluSx SINE Alu -31 281 1 1116 197 167 23 chr4 29845384 29845526 -154443136 - AluJo SINE Alu -100 202 1 802 253 177 7 chr4 29845529 29845829 -154442833 - HsTC2 DNA Tc2 -1544 354 4 479 191 0 0 chr4 29845872 29845961 -154442701 - AluJ/FRAM SINE Alu -3 309 221 1101 163 23 20 chr4 29845961 29846179 -154442483 - L1MB7 LINE L1 -92 6092 5879 390 71 11 153 chr4 29846202 29846224 -154442438 + L1MB7 LINE L1 6102 6125 -53 2043 151 0 10 chr4 29846224 29846529 -154442133 - AluSx SINE Alu -10 302 1 390 71 11 153 chr4 29846529 29846591 -154442071 + L1MB7 LINE L1 6125 6178 0 239 260 41 0 chr4 29846722 29846795 -154441867 - L1MC4 LINE L1 -612 7430 7355 656 242 95 40 chr4 29846849 29847101 -154441561 - L1MC5 LINE L1 -728 7233 6968 367 277 7 57 chr4 29847253 29847394 -154441268 + MER94 DNA DNA 1 134 0 3039 210 63 53 chr4 29847438 29847725 -154440937 - L1ME1 LINE L1 0 6166 5883 2151 108 9 29 chr4 29847725 29848040 -154440622 - AluSc SINE Alu 0 309 1 3039 210 63 53 chr4 29848040 29848688 -154439974 - L1ME1 LINE L1 -283 5883 5243 2397 36 23 7 chr4 29848688 29848990 -154439672 + AluY SINE Alu 1 307 -4 3039 210 63 53 chr4 29848990 29849043 -154439619 - L1ME1 LINE L1 -923 5243 5192 1662 114 18 0 chr4 29849043 29849270 -154439392 - AluSx SINE Alu -65 247 17 3039 210 63 53 chr4 29849270 29849355 -154439307 - L1ME1 LINE L1 -974 5192 5127 3902 206 36 103 chr4 29849359 29849714 -154438948 - L1M4 LINE L1 -956 5190 4813 1858 228 66 29 chr4 29849714 29850201 -154438461 - MLT1D LTR MaLR 0 505 1 3902 206 36 103 chr4 29850201 29851204 -154437458 - L1M4 LINE L1 -1333 4813 3972 1691 178 27 7 chr4 29851204 29851502 -154437160 - AluJo SINE Alu -8 304 1 3902 206 36 103 chr4 29851502 29851877 -154436785 - L1M4 LINE L1 -2174 3972 3573 445 235 104 97 chr4 29851880 29851966 -154436696 - L1MEc LINE L1 -4850 1576 1492 2092 136 0 0 chr4 29851966 29852260 -154436402 - AluSx SINE Alu -18 294 1 445 235 104 97 chr4 29852260 29852304 -154436358 - L1MEc LINE L1 -4934 1492 1450 1956 155 0 3 chr4 29852304 29852601 -154436061 - AluJb SINE Alu -14 298 3 445 235 104 97 chr4 29852601 29852626 -154436036 - L1MEc LINE L1 -4976 1450 1427 1880 179 3 0 chr4 29852626 29852928 -154435734 + AluJb SINE Alu 1 303 -9 445 235 104 97 chr4 29852928 29853060 -154435602 - L1MEc LINE L1 -4999 1427 1303 734 249 32 60 chr4 29853094 29853248 -154435414 - L1MEc LINE L1 -5231 1376 1219 2507 75 0 3 chr4 29853248 29853554 -154435108 - AluSc SINE Alu -4 305 1 734 249 32 60 chr4 29853554 29853708 -154434954 - L1MEc LINE L1 -5388 1219 1083 1997 152 3 7 chr4 29853708 29854011 -154434651 - AluSx SINE Alu -10 302 1 734 249 32 60 chr4 29854011 29854166 -154434496 - L1MEc LINE L1 -5524 1083 925 475 208 108 15 chr4 29854227 29854357 -154434305 + MER58B DNA MER1_type 197 338 -3 1297 219 65 78 chr4 29854359 29855022 -154433640 - L1MEc LINE L1 -5705 902 249 2015 141 0 7 chr4 29855031 29855328 -154433334 - AluJo SINE Alu -17 295 1 2021 147 3 0 chr4 29855747 29856040 -154432622 + AluSx SINE Alu 1 294 -18 505 214 57 0 chr4 29856129 29856269 -154432393 + L1M4 LINE L1 3573 3720 -2426 1584 107 47 0 chr4 29856370 29856585 -154432077 + AluSg/x SINE Alu 78 302 -10 1405 195 62 0 chr4 29859107 29859379 -154429283 - AluJo SINE Alu -13 299 11 2072 132 0 3 chr4 29859433 29859722 -154428940 + AluSx SINE Alu 1 288 -24 1964 150 3 3 chr4 29859747 29860041 -154428621 + AluJb SINE Alu 1 294 -18 833 179 70 35 chr4 29860286 29860627 -154428035 - L1MB7 LINE L1 -19 6165 5781 2030 145 0 0 chr4 29860756 29861053 -154427609 - AluSx SINE Alu -13 299 3 846 251 118 5 chr4 29861064 29861267 -154427395 - MIR SINE MIR -14 248 23 729 280 34 45 chr4 29861488 29861842 -154426820 - MLT1K LTR MaLR -63 525 176 1891 163 0 10 chr4 29862369 29862663 -154425999 - AluJb SINE Alu -21 291 1 2679 146 54 14 chr4 29862679 29863179 -154425483 - L1MB7 LINE L1 -19 6165 5646 2118 127 26 47 chr4 29863179 29863566 -154425096 - MLT1B LTR MaLR -5 385 7 3928 172 88 4 chr4 29863567 29864142 -154424520 - L1MB7 LINE L1 -538 5646 5120 2325 78 10 0 chr4 29864142 29864435 -154424227 - AluY SINE Alu -15 296 1 3928 172 88 4 chr4 29864435 29865051 -154423611 - L1MB7 LINE L1 -1064 5120 4358 772 175 115 11 chr4 29865099 29865282 -154423380 + Tigger2a DNA MER2_type 1 202 -232 480 157 22 22 chr4 29865282 29865371 -154423291 - FLAM SINE Alu -17 126 38 1085 111 116 28 chr4 29865371 29865519 -154423143 + Tigger2a DNA MER2_type 200 374 -2334 2277 156 45 26 chr4 29865519 29865937 -154422725 + MSTB LTR MaLR 1 426 0 1085 111 116 28 chr4 29865937 29866004 -154422658 + Tigger2a DNA MER2_type 374 434 0 501 170 20 0 chr4 29866007 29866107 -154422555 - L1MB2 LINE L1 -28 6143 6042 329 261 148 21 chr4 29867569 29867711 -154420951 + L3b LINE CR1 1243 1402 -181 951 264 46 4 chr4 29867750 29867989 -154420673 - MIR SINE MIR 0 262 14 346 307 193 8 chr4 29868274 29868512 -154420150 + L1MC/D LINE L1 5260 5541 -2267 2794 24 9 0 chr4 29868531 29868914 -154419748 + L1PA3 LINE L1 5791 6176 0 1824 182 0 0 chr4 29869074 29869370 -154419292 - AluJb SINE Alu -16 296 1 292 327 101 30 chr4 29870076 29870379 -154418283 + L2 LINE L2 2749 3069 -203 570 168 0 0 chr4 29870411 29870512 -154418150 + L1MC1 LINE L1 6233 6333 0 336 238 104 74 chr4 29870581 29870850 -154417812 + Charlie7 DNA MER1_type 472 748 -1864 565 193 77 50 chr4 29870855 29871036 -154417626 + Charlie7 DNA MER1_type 2108 2293 -319 23 0 0 0 chr4 29872576 29872599 -154416063 + AT_rich Low_complexity Low_complexity 1 23 0 2002 143 24 0 chr4 29872690 29873026 -154415636 - MER2 DNA MER2_type 0 344 1 498 244 17 17 chr4 29874181 29874300 -154414362 - L2 LINE L2 -2 3270 3152 2133 113 3 27 chr4 29874517 29874817 -154413845 - AluSx SINE Alu -3 309 17 430 226 226 13 chr4 29875087 29875246 -154413416 + MIR SINE MIR 49 241 -21 221 247 14 68 chr4 29875448 29875521 -154413141 - MIR SINE MIR -123 85 17 267 384 46 13 chr4 29876104 29876255 -154412407 + MER5A DNA MER1_type 34 189 0 2045 133 7 23 chr4 29876677 29876979 -154411683 - AluSx SINE Alu -15 297 1 330 294 17 17 chr4 29877396 29877573 -154411089 - L1ME LINE L1 -355 5766 5590 203 361 0 0 chr4 29877845 29877906 -154410756 + L2 LINE L2 3212 3272 0 * 428 309 184 10 chr4 29877896 29878097 -154410565 + MIR SINE MIR 6 241 -21 462 62 0 186 chr4 29878234 29878331 -154410331 + MADE1 DNA Mariner 2 80 0 873 114 0 23 chr4 29878931 29879062 -154409600 - FLAM_C SINE Alu -5 128 1 376 344 53 13 chr4 29879424 29879575 -154409087 + MIR3 SINE MIR 3 159 -49 301 244 165 8 chr4 29879577 29879704 -154408958 + MER117 DNA MER1_type 2 148 -49 224 345 126 0 chr4 29880209 29880296 -154408366 + L2 LINE L2 3159 3256 -16 1477 286 142 21 chr4 29881151 29881801 -154406861 - L3 LINE CR1 -7 1570 843 182 250 56 69 chr4 29882042 29882071 -154406591 + L3 LINE CR1 463 491 -1086 1034 159 74 0 chr4 29882071 29882247 -154406415 - MER5A DNA MER1_type 0 189 1 182 250 56 69 chr4 29882247 29882289 -154406373 + L3 LINE CR1 491 533 -1044 246 279 29 0 chr4 29882512 29882580 -154406082 - MIR SINE MIR -26 236 167 2372 114 14 46 chr4 29882892 29883259 -154405403 + LTR18A LTR ERVL 3 357 0 2643 191 23 19 chr4 29883285 29883809 -154404853 + HERVL18 LTR ERVL 9 534 -5513 2018 208 63 9 chr4 29883778 29884220 -154404442 + HERVL18 LTR ERVL 1149 1614 -4433 * 259 57 0 0 chr4 29884218 29884253 -154404409 + HERVL18 LTR ERVL 1776 1810 -4237 * 1157 112 77 2 chr4 29884252 29884509 -154404153 + HERVL18 LTR ERVL 2119 2452 -3595 * 4826 177 12 5 chr4 29884508 29885355 -154403307 + HERVL18 LTR ERVL 2720 3572 -2475 643 128 11 0 chr4 29885365 29885459 -154403203 + HERVL18 LTR ERVL 4394 4488 -1559 514 172 30 0 chr4 29885518 29885617 -154403045 + HERVL18 LTR ERVL 5946 6047 0 2185 129 13 76 chr4 29885618 29885999 -154402663 + LTR18A LTR ERVL 1 357 0 21 89 0 0 chr4 29886666 29886722 -154401940 + AT_rich Low_complexity Low_complexity 1 56 0 605 155 54 47 chr4 29886921 29887069 -154401593 - MIR SINE MIR 0 262 114 3557 130 26 16 chr4 29887103 29887719 -154400943 - L1MC1 LINE L1 0 6333 5712 326 303 112 13 chr4 29888126 29888278 -154400384 + L1ME3A LINE L1 5989 6155 -15 344 276 0 0 chr4 29888448 29888524 -154400138 - MIR3 SINE MIR -24 184 109 33 43 0 0 chr4 29888662 29888709 -154399953 + AT_rich Low_complexity Low_complexity 1 47 0 2434 69 0 3 chr4 29890571 29890876 -154397786 - AluY SINE Alu -7 304 1 2331 112 0 0 chr4 29893690 29893994 -154394668 - AluSx SINE Alu -8 304 1 30 27 0 0 chr4 29894259 29894296 -154394366 + AT_rich Low_complexity Low_complexity 1 37 0 323 253 126 77 chr4 29894456 29894638 -154394024 + MIR SINE MIR 2 192 -70 2002 138 3 0 chr4 29895553 29895842 -154392820 - AluSx SINE Alu -22 290 1 199 327 97 12 chr4 29896618 29896754 -154391908 + L3b LINE CR1 1287 1441 -142 2847 131 35 33 chr4 29896754 29897243 -154391419 - LTR2B LTR ERV1 0 490 1 199 327 97 12 chr4 29897243 29897271 -154391391 + L3b LINE CR1 1441 1465 -118 1932 82 47 72 chr4 29898251 29898570 -154390092 + AluSq SINE Alu 1 311 -2 252 263 109 0 chr4 29898811 29898948 -154389714 - L1ME LINE L1 -295 5826 5675 1259 85 149 5 chr4 29899212 29899413 -154389249 - MER30 DNA MER1_type 0 230 1 2011 58 0 149 chr4 29900327 29900675 -154387987 - AluY SINE Alu -15 296 1 404 223 89 27 chr4 29900796 29900908 -154387754 - MER5B DNA MER1_type -14 164 46 390 249 22 50 chr4 29901226 29901407 -154387255 + (CCCCG)n Simple_repeat Simple_repeat 4 179 0 3526 261 121 16 chr4 29902757 29904017 -154384645 - L2 LINE L2 -1772 1542 150 358 318 9 0 chr4 29904185 29904292 -154384370 - MIR SINE MIR -68 140 33 22 35 0 0 chr4 29905467 29905496 -154383166 + AT_rich Low_complexity Low_complexity 1 29 0 1607 148 0 79 chr4 29905567 29905872 -154382790 - AluSx SINE Alu -31 281 1 272 128 26 0 chr4 29906035 29906074 -154382588 + AluJo/FLAM SINE Alu 76 115 -187 848 136 7 21 chr4 29906076 29906216 -154382446 - AluJb SINE Alu -174 138 1 2069 131 3 7 chr4 29906986 29907292 -154381370 + AluSg SINE Alu 1 305 -5 1217 120 0 6 chr4 29907784 29907959 -154380703 + AluSc SINE Alu 135 308 -1 230 223 204 0 chr4 29907960 29908063 -154380599 - Charlie5 DNA MER1_type -2238 374 251 1918 140 6 22 chr4 29908068 29908383 -154380279 + AluSx SINE Alu 1 310 -2 2477 59 0 50 chr4 29909030 29909352 -154379310 - AluY SINE Alu -5 306 1 222 37 0 0 chr4 29909484 29909511 -154379151 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 29 60 0 0 chr4 29909716 29909766 -154378896 + AT_rich Low_complexity Low_complexity 1 50 0 2096 121 13 0 chr4 29909799 29910104 -154378558 + AluSq SINE Alu 1 309 -4 243 282 230 0 chr4 29910540 29910714 -154377948 + MIR SINE MIR 32 245 -17 1757 149 28 0 chr4 29910718 29911007 -154377655 - AluSx SINE Alu 0 312 16 2047 133 3 0 chr4 29911517 29911811 -154376851 - AluSx SINE Alu -13 299 5 242 188 21 94 chr4 29911811 29911907 -154376755 + LTR33A LTR ERVL 434 522 -1 324 305 38 9 chr4 29911924 29912029 -154376633 - L2 LINE L2 0 3313 3206 7328 159 74 32 chr4 29912059 29912120 -154376542 - Charlie5 DNA MER1_type 0 2624 2567 2371 88 3 0 chr4 29912120 29912415 -154376247 + AluSx SINE Alu 1 296 -16 7328 159 74 32 chr4 29912415 29913145 -154375517 - Charlie5 DNA MER1_type -57 2567 1869 1895 173 0 3 chr4 29913145 29913457 -154375205 - AluJb SINE Alu -1 311 1 7328 159 74 32 chr4 29913457 29914302 -154374360 - Charlie5 DNA MER1_type -755 1869 918 1357 101 5 29 chr4 29914496 29914703 -154373959 + AluSg/x SINE Alu 73 274 -36 330 26 0 0 chr4 29914704 29914743 -154373919 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 578 313 13 22 chr4 29915342 29915566 -154373096 - MIR SINE MIR -40 222 1 837 130 0 0 chr4 29915567 29915690 -154372972 - AluJ SINE Alu -7 305 183 884 133 39 0 chr4 29915700 29915828 -154372834 - AluJ SINE Alu -169 133 1 1858 142 0 28 chr4 29915841 29916150 -154372512 - AluSx SINE Alu 0 301 1 409 282 53 18 chr4 29916286 29916456 -154372206 + MIR SINE MIR 33 208 -54 1754 167 103 42 chr4 29916566 29916973 -154371689 - MLT1C LTR MaLR 0 467 36 1300 158 5 5 chr4 29916974 29917183 -154371479 - AluJb SINE Alu -9 303 95 352 103 17 35 chr4 29917285 29917343 -154371319 - LTR6A LTR ERV1 -505 59 3 572 196 51 38 chr4 29917426 29917584 -154371078 + MER106B DNA MER1_type 897 1056 -3 1490 134 0 13 chr4 29917746 29917769 -154370893 - AluSg/x SINE Alu 0 312 290 1488 28 0 0 chr4 29917769 29917946 -154370716 + (TCTCC)n Simple_repeat Simple_repeat 2 178 0 198 0 0 0 chr4 29917953 29917975 -154370687 + (TTTTC)n Simple_repeat Simple_repeat 4 25 0 1490 134 0 13 chr4 29917975 29918174 -154370488 - AluSg/x SINE Alu -28 284 85 192 40 0 0 chr4 29918293 29918318 -154370344 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 563 128 22 172 chr4 29918329 29918509 -154370153 - L2 LINE L2 -50 3263 3111 1567 156 28 38 chr4 29918530 29918850 -154369812 + L1MC2 LINE L1 6025 6341 -3 282 29 0 0 chr4 29918871 29918906 -154369756 + (A)n Simple_repeat Simple_repeat 1 35 0 223 284 21 84 chr4 29919639 29919734 -154368928 - L2 LINE L2 -56 3216 3128 1382 231 46 9 chr4 29919797 29919975 -154368687 + MLT1A2 LTR MaLR 1 171 -203 243 0 0 0 chr4 29919975 29920002 -154368660 + (TC)n Simple_repeat Simple_repeat 2 28 0 1382 231 46 9 chr4 29920002 29920173 -154368489 + MLT1A2 LTR MaLR 171 363 -11 330 340 51 7 chr4 29920615 29920762 -154367900 + MIR SINE MIR 23 179 -29 803 226 12 0 chr4 29920763 29920927 -154367735 + L1ME LINE L1 5504 5669 -493 2243 89 7 0 chr4 29920928 29921346 -154367316 + AluSp SINE Alu 1 420 0 6009 113 13 11 chr4 29921353 29922537 -154366125 + L1MA3 LINE L1 4859 6139 -166 756 104 0 0 chr4 29922540 29922636 -154366026 + AluJ/FLAM SINE Alu 5 100 -212 2034 71 8 11 chr4 29922745 29923013 -154365649 - AluSp SINE Alu -46 267 1 992 104 7 0 chr4 29923013 29923148 -154365514 - AluSq/x SINE Alu -177 136 1 394 241 0 0 chr4 29923212 29923299 -154365363 + L2 LINE L2 3187 3273 -40 216 300 88 0 chr4 29923393 29923473 -154365189 + L2 LINE L2 3134 3220 -52 446 254 0 18 chr4 29923493 29923603 -154365059 - L2 LINE L2 -4 3309 3202 242 317 78 42 chr4 29923609 29923751 -154364911 - L2 LINE L2 -9 3304 3158 1827 158 63 20 chr4 29923842 29924189 -154364473 + MLT1A1 LTR MaLR 1 362 -3 335 313 133 24 chr4 29924191 29924357 -154364305 + MIR SINE MIR 17 200 -62 2004 127 3 10 chr4 29925386 29925678 -154362984 - AluSx SINE Alu -22 290 1 1269 107 95 196 chr4 29925686 29926022 -154362640 - AluJo SINE Alu 0 302 1 264 282 20 40 chr4 29926149 29926298 -154362364 + L1ME4a LINE L1 5976 6121 0 378 101 27 0 chr4 29926700 29926775 -154361887 + L1P5 LINE L1 5409 5488 -666 2039 87 80 0 chr4 29926777 29927053 -154361609 + AluSg SINE Alu 1 298 -12 310 223 133 85 chr4 29927081 29927292 -154361370 - AluSq SINE Alu 0 303 83 1587 114 188 8 chr4 29927854 29928109 -154360553 - AluSx SINE Alu -11 301 1 207 0 0 0 chr4 29928137 29928160 -154360502 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1358 133 127 112 chr4 29928189 29928444 -154360218 + Charlie5 DNA MER1_type 426 691 -1933 2010 103 21 3 chr4 29928444 29928734 -154359928 + AluSp SINE Alu 1 295 -18 1358 133 127 112 chr4 29928734 29928905 -154359757 + Charlie5 DNA MER1_type 691 858 -1766 1143 229 7 58 chr4 29928970 29929280 -154359382 - AluJb SINE Alu -8 294 1 251 154 46 31 chr4 29929319 29929384 -154359278 + Charlie5 DNA MER1_type 855 920 -1692 2237 91 11 0 chr4 29929573 29929859 -154358803 + AluSq SINE Alu 5 293 -20 400 323 41 25 chr4 29929875 29930194 -154358468 - L1ME4a LINE L1 -103 6018 5695 13737 149 39 28 chr4 29931478 29932447 -154356215 - Tigger1 DNA MER2_type -1 2417 1461 1564 146 109 4 chr4 29932447 29932714 -154355948 + AluJb SINE Alu 1 295 -17 13737 149 39 28 chr4 29932714 29933819 -154354843 - Tigger1 DNA MER2_type -957 1461 370 2031 105 61 0 chr4 29933819 29934114 -154354548 - AluSp SINE Alu 0 313 1 1963 150 10 3 chr4 29934117 29934411 -154354251 - AluSx SINE Alu -16 296 1 13737 149 39 28 chr4 29934411 29934720 -154353942 - Tigger1 DNA MER2_type -2049 369 1 25 51 0 0 chr4 29934873 29934912 -154353750 + AT_rich Low_complexity Low_complexity 1 39 0 1540 159 72 14 chr4 29935756 29936032 -154352630 + AluJo SINE Alu 1 292 -20 2183 104 13 19 chr4 29936891 29937061 -154351601 - AluSx SINE Alu -7 305 136 2429 71 0 0 chr4 29937061 29937358 -154351304 - AluSc SINE Alu -12 297 1 2183 104 13 19 chr4 29937358 29937494 -154351168 - AluSx SINE Alu -176 136 1 573 263 125 18 chr4 29939215 29939439 -154349223 - MIR SINE MIR 0 262 15 741 259 140 35 chr4 29940714 29941021 -154347641 - MLT1H LTR MaLR -182 367 1 2239 121 0 0 chr4 29941281 29941587 -154347075 + AluSx SINE Alu 1 306 -6 350 111 95 0 chr4 29942388 29942451 -154346211 - L1MA4A LINE L1 -6 6297 6229 273 314 113 24 chr4 29943180 29943304 -154345358 - MIR3 SINE MIR -66 142 8 2207 102 26 7 chr4 29943346 29943649 -154345013 - AluSx SINE Alu -1 311 3 476 326 117 61 chr4 29943880 29944257 -154344405 + L2 LINE L2 2866 3263 -9 342 253 50 91 chr4 29944905 29945126 -154343536 - HAL1 LINE L1 -4 2503 2292 1005 286 87 43 chr4 29945301 29945838 -154342824 - HAL1 LINE L1 -668 1839 1264 788 188 0 0 chr4 29945838 29945966 -154342696 - FLAM_A SINE Alu -5 128 1 1005 286 87 43 chr4 29945966 29946107 -154342555 - HAL1 LINE L1 -1243 1264 1131 1230 261 148 31 chr4 29946166 29946880 -154341782 - L2 LINE L2 -174 3139 2335 1292 233 120 69 chr4 29946895 29947535 -154341127 - L1MC4 LINE L1 -4 8038 7366 2941 245 196 12 chr4 29947544 29948898 -154339764 - L2 LINE L2 -961 2353 750 325 310 55 21 chr4 29948901 29949046 -154339616 - HAL1 LINE L1 -1394 1113 964 188 200 80 0 chr4 29949892 29949942 -154338720 - MIR SINE MIR -98 164 111 295 305 57 0 chr4 29951010 29951115 -154337547 - L1MC5 LINE L1 -46 7915 7805 682 190 35 0 chr4 29951145 29951287 -154337375 - L1MA4 LINE L1 -5 6295 6149 211 267 44 56 chr4 29951402 29951492 -154337170 - L2 LINE L2 -36 3277 3189 658 235 117 0 chr4 29951519 29951685 -154336977 - MER3 DNA MER1_type 0 209 25 201 244 37 73 chr4 29952574 29952656 -154336006 + MIR SINE MIR 17 95 -113 245 213 250 19 chr4 29952656 29952764 -154335898 + L2 LINE L2 3179 3311 -2 355 169 0 0 chr4 29955279 29955338 -154333324 - Charlie1a DNA MER1_type 0 1455 1397 1298 131 0 0 chr4 29955338 29955521 -154333141 + AluSg/x SINE Alu 118 300 -12 2886 166 70 56 chr4 29955521 29955650 -154333012 - Charlie1a DNA MER1_type -1356 1405 1279 750 204 80 0 chr4 29955650 29955812 -154332850 + FAM SINE Alu 1 175 0 2886 166 70 56 chr4 29955812 29956429 -154332233 - Charlie1a DNA MER1_type -1482 1279 649 1340 157 142 11 chr4 29956439 29956700 -154331962 - AluJb SINE Alu -17 295 1 1493 225 129 10 chr4 29956715 29957101 -154331561 - Charlie1a DNA MER1_type -1023 432 1 427 196 214 12 chr4 29958325 29958493 -154330169 - MIR SINE MIR -5 257 56 2077 94 101 3 chr4 29958534 29958862 -154329800 + MER46B DNA MER2_type 1 235 -1 243 0 0 0 chr4 29958901 29958928 -154329734 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 800 294 17 4 chr4 29959436 29959667 -154328995 + MIR SINE MIR 2 235 -27 2699 219 68 55 chr4 29959713 29960403 -154328259 - MER21B LTR ERV1 -62 801 98 1783 140 49 0 chr4 29960403 29960668 -154327994 + AluSx SINE Alu 25 302 -10 2699 219 68 55 chr4 29960668 29960746 -154327916 - MER21B LTR ERV1 -765 98 23 329 310 69 25 chr4 29960852 29961055 -154327607 + MIR SINE MIR 8 219 -43 192 77 0 0 chr4 29961508 29961534 -154327128 + (TTTTTG)n Simple_repeat Simple_repeat 4 29 0 373 192 26 0 chr4 29961724 29961802 -154326860 + MER116 DNA Mariner 1 80 0 198 0 0 0 chr4 29961828 29961850 -154326812 + (TG)n Simple_repeat Simple_repeat 2 23 0 23 33 0 0 chr4 29962190 29962220 -154326442 + AT_rich Low_complexity Low_complexity 1 30 0 1955 154 13 0 chr4 29965019 29965318 -154323344 - AluJo SINE Alu -9 303 1 1969 149 3 13 chr4 29966502 29966804 -154321858 + AluSx SINE Alu 1 299 -13 466 68 41 0 chr4 29968213 29968286 -154320376 - L1MA3 LINE L1 0 6305 6230 303 304 92 4 chr4 29969377 29969523 -154319139 + MER5A DNA MER1_type 22 188 -1 1544 150 82 0 chr4 29970365 29970632 -154318030 + AluJb SINE Alu 1 289 -23 357 82 0 0 chr4 29970633 29970648 -154318014 + (TG)n Simple_repeat Simple_repeat 1 64 0 357 82 0 0 chr4 29970648 29970697 -154317965 + (TG)n Simple_repeat Simple_repeat 2 50 0 888 310 93 2 chr4 29970905 29971389 -154317273 - L2 LINE L2 -1326 1988 1461 289 311 141 28 chr4 29971423 29971786 -154316876 - L2 LINE L2 -2304 1010 607 231 61 0 0 chr4 29972093 29972126 -154316536 + (TTTAA)n Simple_repeat Simple_repeat 3 35 0 1430 181 47 29 chr4 29972127 29972403 -154316259 - AluJo SINE Alu -31 281 1 347 266 101 41 chr4 29973141 29973310 -154315352 - MIR SINE MIR -52 210 32 622 304 36 24 chr4 29973314 29973561 -154315101 - MIR SINE MIR 0 262 13 1402 136 15 0 chr4 29973907 29974113 -154314549 - AluSg/x SINE Alu -19 293 85 297 0 0 0 chr4 29974222 29974255 -154314407 + (TG)n Simple_repeat Simple_repeat 2 34 0 1237 151 184 25 chr4 29974272 29974511 -154314151 - AluJo SINE Alu -35 277 1 472 279 14 43 chr4 29975488 29975696 -154312966 - MIR SINE MIR -5 257 56 245 217 34 16 chr4 29976364 29976436 -154312226 + MER45A DNA AcHobo 2 64 -114 2056 105 26 61 chr4 29976452 29976796 -154311866 - THE1B LTR MaLR -32 332 1 1633 163 30 13 chr4 29976822 29977122 -154311540 - MER89 LTR ERV1 -2 557 253 335 183 21 11 chr4 29977122 29977363 -154311299 + AluJo SINE Alu 1 299 -3 2374 97 0 0 chr4 29977375 29977684 -154310978 - AluSq SINE Alu -3 310 2 817 252 91 9 chr4 29977684 29977914 -154310748 - MER89 LTR ERV1 -304 255 7 449 165 153 0 chr4 29977929 29978014 -154310648 + MER45A DNA AcHobo 81 178 0 350 293 83 13 chr4 29978838 29978995 -154309667 + MIR SINE MIR 31 198 -64 432 290 6 19 chr4 29979201 29979363 -154309299 + MARNA DNA Mariner 340 499 -87 273 233 0 14 chr4 29979736 29979809 -154308853 + MER63 DNA MER1_type 953 1024 -36 2074 127 10 3 chr4 29979813 29980112 -154308550 + AluSq SINE Alu 1 301 -12 1099 243 131 44 chr4 29980152 29980724 -154307938 - HAL1 LINE L1 -1174 1333 712 580 256 154 43 chr4 29980725 29980959 -154307703 - MLT1H LTR MaLR -2 547 288 319 252 45 54 chr4 29980959 29981070 -154307592 - HAL1 LINE L1 -2397 110 1 547 290 86 15 chr4 29981106 29981242 -154307420 - L2 LINE L2 -345 2927 2802 2187 129 3 0 chr4 29981242 29981551 -154307111 - AluSx SINE Alu -2 310 1 547 290 86 15 chr4 29981551 29981751 -154306911 - L2 LINE L2 -470 2802 2572 304 229 24 0 chr4 29982559 29982642 -154306020 - MIR SINE MIR -108 154 70 2102 133 0 0 chr4 29983013 29983307 -154305355 + AluSx SINE Alu 1 294 -18 214 271 72 72 chr4 29983378 29983585 -154305077 + MIR SINE MIR 35 241 -21 708 259 34 43 chr4 29983621 29983831 -154304831 + MIR SINE MIR 23 228 -34 379 221 106 0 chr4 29984147 29984251 -154304411 - L1ME4a LINE L1 -1 6120 6006 2321 105 0 6 chr4 29984369 29984682 -154303980 + AluSx SINE Alu 1 311 -1 2437 174 102 15 chr4 29984877 29985177 -154303485 - L1PA16 LINE L1 -16 6150 5878 2630 59 0 0 chr4 29985177 29985482 -154303180 - AluY SINE Alu -6 305 1 2437 174 102 15 chr4 29985482 29985518 -154303144 - L1PA16 LINE L1 -288 5878 5847 366 23 0 0 chr4 29985518 29985561 -154303101 + (TG)n Simple_repeat Simple_repeat 2 44 0 2437 174 102 15 chr4 29985561 29985752 -154302910 - L1PA16 LINE L1 -319 5847 5576 2719 221 90 20 chr4 29986246 29987036 -154301626 - L1ME3A LINE L1 -1 6169 5325 333 308 126 13 chr4 29987591 29987750 -154300912 + MIR SINE MIR 32 208 -54 1991 130 47 13 chr4 29988980 29989281 -154299381 + AluSx SINE Alu 1 311 -1 411 334 146 13 chr4 29989411 29989719 -154298943 - L2 LINE L2 -1 3271 2923 583 262 108 68 chr4 29989862 29990325 -154298337 - L2 LINE L2 0 3313 2740 1790 141 31 21 chr4 29990325 29990615 -154298047 - AluJo SINE Alu -19 293 1 583 262 108 68 chr4 29990615 29990829 -154297833 - L2 LINE L2 -573 2740 2536 605 193 18 48 chr4 29990844 29991010 -154297652 + MER5A DNA MER1_type 1 161 -28 2410 95 0 0 chr4 29991261 29991566 -154297096 + AluSx SINE Alu 1 305 -7 309 344 46 0 chr4 29991566 29991717 -154296945 - MIR SINE MIR -5 257 100 371 168 40 30 chr4 29991728 29991829 -154296833 + L1MB3 LINE L1 6082 6183 0 2436 85 13 0 chr4 29992381 29992686 -154295976 - AluSx SINE Alu -3 309 1 23 33 0 0 chr4 29992692 29992722 -154295940 + AT_rich Low_complexity Low_complexity 1 30 0 605 274 58 61 chr4 29993137 29993447 -154295215 + MER46C DNA MER2_type 30 338 0 190 278 111 19 chr4 29993484 29993592 -154295070 + MIR SINE MIR 23 140 -68 368 269 62 66 chr4 29993731 29993988 -154294674 + L2 LINE L2 3015 3270 -43 26 50 0 0 chr4 29995312 29995352 -154293310 + AT_rich Low_complexity Low_complexity 1 40 0 2133 96 7 36 chr4 29995395 29995698 -154292964 - AluSq SINE Alu -19 294 1 667 306 53 42 chr4 29995706 29996138 -154292524 - L1ME3A LINE L1 -285 5885 5449 283 264 207 11 chr4 29996195 29996409 -154292253 - MIR SINE MIR -7 255 2 194 350 48 10 chr4 29996409 29996512 -154292150 - MIR3 SINE MIR -51 157 51 254 264 189 0 chr4 29996701 29996807 -154291855 - MIR SINE MIR -31 231 106 3039 138 40 108 chr4 29997028 29997227 -154291435 - L1MC3 LINE L1 -6 7779 7568 1882 151 30 7 chr4 29997227 29997532 -154291130 - AluSx SINE Alu 0 312 1 3039 138 40 108 chr4 29997532 29998029 -154290633 - L1MC3 LINE L1 -217 7568 7130 1904 153 14 14 chr4 29998029 29998324 -154290338 + AluJb SINE Alu 1 295 -17 328 290 36 22 chr4 29998526 29998668 -154289994 - MIR SINE MIR -60 148 18 210 290 101 36 chr4 29999029 29999167 -154289495 - MER5A DNA MER1_type -6 183 37 583 198 9 0 chr4 29999186 29999292 -154289370 + AluJb SINE Alu 193 299 -13 437 250 14 0 chr4 29999337 29999481 -154289181 + GA-rich Low_complexity Low_complexity 3 148 0 906 152 0 0 chr4 29999485 29999803 -154288859 + FLAM_C SINE Alu 1 318 0 3592 138 69 12 chr4 29999814 30000483 -154288179 + L1MB3 LINE L1 5477 6183 0 636 173 12 93 chr4 30000495 30000604 -154288058 - MIR SINE MIR -74 188 72 2132 94 22 0 chr4 30000604 30000881 -154287781 + AluSq SINE Alu 1 283 -30 207 0 0 0 chr4 30000884 30000907 -154287755 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 636 173 12 93 chr4 30000907 30000955 -154287707 - MIR SINE MIR -192 70 40 367 259 78 92 chr4 30000957 30001109 -154287553 + L2 LINE L2 2971 3124 -189 213 39 0 0 chr4 30001109 30001135 -154287527 + (TTA)n Simple_repeat Simple_repeat 2 27 0 367 259 78 92 chr4 30001135 30001329 -154287333 + L2 LINE L2 3124 3312 -1 575 275 64 49 chr4 30001330 30001675 -154286987 - L2 LINE L2 -14 3258 2909 363 68 0 0 chr4 30001731 30001775 -154286887 + MER57B LTR ERV1 324 367 -67 25 0 0 0 chr4 30001775 30001800 -154286862 + AT_rich Low_complexity Low_complexity 1 25 0 342 308 58 47 chr4 30002071 30002243 -154286419 - MIR SINE MIR -62 200 27 1768 193 82 37 chr4 30003163 30003542 -154285120 - MSTD LTR MaLR 0 396 1 258 333 138 24 chr4 30003775 30004066 -154284596 + L2 LINE L2 334 657 -2657 993 243 194 19 chr4 30004150 30004682 -154283980 + L2 LINE L2 1320 1944 -1370 721 217 60 18 chr4 30005451 30005617 -154283045 - AluJo SINE Alu -20 292 120 1019 85 8 0 chr4 30005691 30005821 -154282841 - AluSg SINE Alu -179 131 1 214 320 13 0 chr4 30005826 30005904 -154282758 + L2 LINE L2 3234 3312 -1 1102 124 56 6 chr4 30006518 30006696 -154281966 - L1PB4 LINE L1 -2 6154 5968 1086 190 5 9 chr4 30006696 30006907 -154281755 - AluSq SINE Alu -20 293 84 3021 125 55 50 chr4 30006907 30007400 -154281262 - L1PB4 LINE L1 -168 5988 5490 1849 105 98 25 chr4 30007400 30007685 -154280977 - AluSq SINE Alu -7 306 1 3021 125 55 50 chr4 30007685 30007753 -154280909 - L1PB4 LINE L1 -666 5490 5424 252 282 20 40 chr4 30008164 30008313 -154280349 - L1ME4a LINE L1 0 6121 5976 1152 107 95 196 chr4 30008440 30008776 -154279886 + AluJo SINE Alu 1 302 0 2067 126 0 10 chr4 30008784 30009077 -154279585 + AluSx SINE Alu 1 290 -22 297 317 126 24 chr4 30010105 30010272 -154278390 - MIR SINE MIR -62 200 17 1756 164 58 17 chr4 30010274 30010622 -154278040 - MLT1A1 LTR MaLR -3 362 1 210 317 78 42 chr4 30010713 30010855 -154277807 + L2 LINE L2 3158 3304 -9 411 254 0 18 chr4 30010861 30010971 -154277691 + L2 LINE L2 3202 3309 -4 189 300 88 0 chr4 30010991 30011071 -154277591 - L2 LINE L2 -52 3220 3134 366 241 0 0 chr4 30011165 30011252 -154277410 - L2 LINE L2 -40 3273 3187 1996 105 22 38 chr4 30011316 30011451 -154277211 + AluSx SINE Alu 1 137 -175 2520 77 0 0 chr4 30011451 30011761 -154276901 + AluSp SINE Alu 1 310 -3 1996 105 22 38 chr4 30011761 30011939 -154276723 + AluSx SINE Alu 137 309 -3 1413 178 34 60 chr4 30012381 30012679 -154275983 + AluJb SINE Alu 5 294 -18 401 248 208 58 chr4 30013027 30013301 -154275361 - L2 LINE L2 -21 3292 2978 475 251 145 67 chr4 30013488 30013901 -154274761 - L2 LINE L2 -321 2992 2550 2056 143 7 79 chr4 30014161 30014579 -154274083 - MLT1B LTR MaLR 0 390 3 1960 129 23 13 chr4 30014598 30014901 -154273761 + AluSx SINE Alu 7 312 0 411 303 45 7 chr4 30015550 30015705 -154272957 - MIR SINE MIR -57 205 45 12186 112 166 84 chr4 30016104 30016449 -154272213 - Tigger4(Zombi) DNA MER2_type -1 2730 2415 2301 102 3 3 chr4 30016449 30016762 -154271900 - AluSq SINE Alu 0 313 1 12186 112 166 84 chr4 30016762 30016993 -154271669 - Tigger4(Zombi) DNA MER2_type -316 2415 2204 207 0 0 0 chr4 30016993 30017016 -154271646 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 12186 112 166 84 chr4 30017016 30017088 -154271574 - Tigger4(Zombi) DNA MER2_type -527 2204 2139 2012 138 0 0 chr4 30017088 30017378 -154271284 - AluSg SINE Alu 0 310 21 12186 112 166 84 chr4 30017378 30017622 -154271040 - Tigger4(Zombi) DNA MER2_type -592 2139 1916 919 152 7 0 chr4 30017622 30017760 -154270902 + AluJo SINE Alu 1 139 -173 12186 112 166 84 chr4 30017760 30017777 -154270885 - Tigger4(Zombi) DNA MER2_type -815 1916 1902 1467 106 0 10 chr4 30017777 30017976 -154270686 - AluSq SINE Alu -116 197 1 12186 112 166 84 chr4 30017976 30018566 -154270096 - Tigger4(Zombi) DNA MER2_type -829 1902 1362 2517 71 0 0 chr4 30018566 30018863 -154269799 - AluSc SINE Alu -12 297 1 12186 112 166 84 chr4 30018863 30019734 -154268928 - Tigger4(Zombi) DNA MER2_type -1369 1362 11 2159 103 0 0 chr4 30020522 30020794 -154267868 + AluSx SINE Alu 36 307 -5 226 0 0 56 chr4 30020848 30020884 -154267778 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 318 105 0 53 chr4 30020888 30020945 -154267717 - AluSp/q SINE Alu -17 286 233 1935 122 0 7 chr4 30021132 30021402 -154267260 - AluSx SINE Alu -44 268 1 587 199 20 0 chr4 30021430 30021576 -154267086 + GA-rich Low_complexity Low_complexity 3 151 0 1985 108 0 8 chr4 30022063 30022331 -154266331 - AluSq SINE Alu -33 280 15 517 140 320 0 chr4 30022559 30022659 -154266003 + FLAM_C SINE Alu 1 132 -1 1859 116 19 0 chr4 30023165 30023423 -154265239 + AluSq SINE Alu 50 312 -1 1935 140 23 7 chr4 30023776 30024076 -154264586 - AluSq SINE Alu -8 305 1 795 155 0 23 chr4 30024108 30024237 -154264425 + FLAM_C SINE Alu 1 126 -7 200 214 0 24 chr4 30024989 30025031 -154263631 + (TAAG)n Simple_repeat Simple_repeat 2 42 0 2292 107 0 7 chr4 30025048 30025358 -154263304 + AluSq SINE Alu 1 308 -5 1639 264 75 19 chr4 30025360 30025929 -154262733 + L1MC1 LINE L1 5352 5956 -1852 2112 144 0 0 chr4 30025929 30026228 -154262434 + AluSq SINE Alu 2 300 -13 1639 264 75 19 chr4 30026228 30026244 -154262418 + L1MC1 LINE L1 5956 5970 -1838 243 61 0 0 chr4 30026259 30026292 -154262370 + (CA)n Simple_repeat Simple_repeat 2 34 0 4989 153 3 16 chr4 30026292 30027272 -154261390 + L1PA15 LINE L1 4502 5476 -689 1390 136 5 0 chr4 30027278 30027484 -154261178 - AluSg/x SINE Alu -20 290 84 3643 97 12 15 chr4 30027484 30028002 -154260660 + L1PA15 LINE L1 5461 5976 -189 1928 94 14 11 chr4 30028117 30028404 -154260258 + L1PA15 LINE L1 5875 6162 -3 252 261 0 0 chr4 30028475 30028544 -154260118 + (TA)n Simple_repeat Simple_repeat 1 69 0 1222 213 141 32 chr4 30028700 30029104 -154259558 - MLT1C LTR MaLR -19 448 1 1066 224 42 102 chr4 30029571 30029992 -154258670 - MLT1A2 LTR MaLR 0 374 1 732 237 60 5 chr4 30030272 30030487 -154258175 + MIR SINE MIR 36 262 0 2383 90 7 0 chr4 30030752 30031051 -154257611 + AluSp SINE Alu 3 303 -10 790 142 8 15 chr4 30031052 30031186 -154257476 + L1MC1 LINE L1 6192 6324 -9 1646 157 10 51 chr4 30031187 30031271 -154257391 + AluJo SINE Alu 1 87 -225 2593 62 0 0 chr4 30031271 30031575 -154257087 + AluY SINE Alu 1 304 -7 1646 157 10 51 chr4 30031575 30031784 -154256878 + AluJo SINE Alu 87 282 -30 204 40 0 0 chr4 30031787 30031812 -154256850 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 1294 105 6 0 chr4 30032263 30032435 -154256227 - AluSg/x SINE Alu -20 290 118 335 304 0 0 chr4 30032457 30032559 -154256103 + MIR SINE MIR 148 249 -13 23 33 0 0 chr4 30033265 30033295 -154255367 + AT_rich Low_complexity Low_complexity 1 30 0 2822 116 16 12 chr4 30033389 30033821 -154254841 + MER57B LTR ERV1 1 434 0 528 244 140 64 chr4 30033836 30033930 -154254732 - MARNA DNA Mariner -162 424 339 2214 97 31 0 chr4 30033930 30034220 -154254442 - AluSq SINE Alu -14 299 1 528 244 140 64 chr4 30034220 30034375 -154254287 - MARNA DNA Mariner -247 339 156 324 340 19 0 chr4 30034433 30034536 -154254126 - MER81 DNA DNA -3 111 7 260 225 98 46 chr4 30034890 30035036 -154253626 + MIR SINE MIR 54 205 -57 4340 111 18 66 chr4 30035215 30035938 -154252724 + LTR8 LTR ERV1 4 691 0 230 296 24 72 chr4 30035944 30036069 -154252593 - L2 LINE L2 -186 3086 2968 2469 82 0 0 chr4 30036187 30036491 -154252171 + AluY SINE Alu 1 304 -7 186 250 33 92 chr4 30036521 30036673 -154251989 - L2 LINE L2 -618 2696 2554 207 243 22 140 chr4 30036704 30036840 -154251822 + L2 LINE L2 3024 3143 -170 495 234 42 42 chr4 30037000 30037167 -154251495 + L2 LINE L2 3147 3313 0 1142 138 0 95 chr4 30038394 30038480 -154250182 + L1PA15 LINE L1 5954 6047 -118 2133 125 10 13 chr4 30038480 30038793 -154249869 + AluSx SINE Alu 1 312 0 1142 138 0 95 chr4 30038793 30038810 -154249852 + L1PA15 LINE L1 6047 6064 -101 2126 131 0 19 chr4 30038810 30039122 -154249540 + AluSx SINE Alu 1 306 -6 1142 138 0 95 chr4 30039122 30039249 -154249413 + L1PA15 LINE L1 6064 6163 -2 28 0 0 0 chr4 30039250 30039278 -154249384 + AT_rich Low_complexity Low_complexity 1 28 0 1076 104 94 30 chr4 30039287 30039488 -154249174 + L1PA16 LINE L1 5952 6165 -1 192 97 0 0 chr4 30039530 30039561 -154249101 + (CAAAAA)n Simple_repeat Simple_repeat 4 34 0 341 271 126 0 chr4 30039870 30040021 -154248641 - L1MEd LINE L1 -4969 1150 981 405 333 80 30 chr4 30040208 30040598 -154248064 - L1MEd LINE L1 -5626 493 81 2051 110 23 36 chr4 30040598 30040906 -154247756 + AluSx SINE Alu 1 304 -8 2810 195 33 20 chr4 30041038 30041203 -154247459 + L1M4 LINE L1 3622 3783 -2363 2169 125 3 10 chr4 30041203 30041515 -154247147 + AluSx SINE Alu 1 310 -2 2810 195 33 20 chr4 30041515 30041948 -154246714 + L1M4 LINE L1 3783 4228 -1918 862 199 44 44 chr4 30041964 30042170 -154246492 + L1MB8 LINE L1 5964 6169 -9 2108 122 0 0 chr4 30042223 30042509 -154246153 - AluSx SINE Alu -26 286 1 250 227 17 118 chr4 30042694 30042882 -154245780 + L1P LINE L1 3584 3753 -2393 1786 161 6 50 chr4 30042882 30043376 -154245286 + AluSx SINE Alu 1 480 0 261 283 9 0 chr4 30043401 30043507 -154245155 + L1M4 LINE L1 3867 3973 -2173 1810 156 16 25 chr4 30043528 30043843 -154244819 + AluJo SINE Alu 1 312 0 2842 10 0 0 chr4 30043892 30044194 -154244468 + AluYa5 SINE Alu 1 302 -9 2054 134 0 10 chr4 30044423 30044715 -154243947 - AluSq SINE Alu -24 289 1 222 362 53 13 chr4 30044715 30044867 -154243795 - MIR SINE MIR -70 192 35 1550 190 6 55 chr4 30045364 30045690 -154242972 - AluJb SINE Alu -2 310 1 401 259 65 35 chr4 30046007 30046177 -154242485 + Charlie7 DNA MER1_type 46 220 -2392 448 256 134 0 chr4 30047166 30047330 -154241332 + MIR SINE MIR 44 229 -33 270 106 0 0 chr4 30047334 30047381 -154241281 + (TG)n Simple_repeat Simple_repeat 2 48 0 242 180 82 0 chr4 30047389 30047450 -154241212 + Charlie7 DNA MER1_type 1452 1517 -1095 431 220 65 24 chr4 30047460 30047628 -154241034 - MER113 DNA MER1_type? -337 184 10 2100 113 20 3 chr4 30047727 30048019 -154240643 - AluSc SINE Alu -12 297 1 672 261 105 8 chr4 30048209 30048447 -154240215 + MIR SINE MIR 1 261 -1 23 33 0 0 chr4 30048476 30048506 -154240156 + AT_rich Low_complexity Low_complexity 1 30 0 1908 107 0 19 chr4 30048520 30048819 -154239843 + AluSx SINE Alu 25 318 0 258 262 60 12 chr4 30048833 30048917 -154239745 - Charlie7 DNA MER1_type -2524 88 1 190 304 0 0 chr4 30049650 30049696 -154238966 - L3 LINE CR1 -5 1572 1527 2082 116 31 0 chr4 30049831 30050124 -154238538 + AluSx SINE Alu 1 302 -10 313 301 84 30 chr4 30050192 30050358 -154238304 + MIR3 SINE MIR 10 184 -24 695 316 30 23 chr4 30050403 30050669 -154237993 - L3 LINE CR1 -97 1480 1213 821 220 75 9 chr4 30050919 30051133 -154237529 - MIR SINE MIR -10 252 25 628 159 145 14 chr4 30051136 30051274 -154237388 + AluJb SINE Alu 137 292 -20 1959 132 28 0 chr4 30051274 30051562 -154237100 + AluJb SINE Alu 1 296 -16 2274 116 0 0 chr4 30051739 30052042 -154236620 - AluSx SINE Alu -9 303 1 1374 236 36 21 chr4 30052047 30052433 -154236229 - L1ME2 LINE L1 0 6164 5773 267 324 37 29 chr4 30052503 30052639 -154236023 - L2 LINE L2 0 3272 3136 1006 144 176 0 chr4 30052749 30052936 -154235726 - AluJo SINE Alu -12 300 81 373 233 133 0 chr4 30053068 30053156 -154235506 - MIR SINE MIR -116 146 47 388 295 132 11 chr4 30053156 30053346 -154235316 + MIR SINE MIR 2 214 -48 2456 91 0 0 chr4 30055199 30055497 -154233165 + AluSx SINE Alu 1 298 -14 390 297 176 43 chr4 30055514 30055770 -154232892 - L2 LINE L2 0 3272 2983 241 100 0 0 chr4 30056147 30056187 -154232475 - Alu SINE Alu -3 297 258 222 194 0 90 chr4 30057557 30057624 -154231038 - MIR SINE MIR -130 132 72 1892 129 44 27 chr4 30057783 30058077 -154230585 + AluJo SINE Alu 6 304 -8 548 60 0 0 chr4 30058376 30058443 -154230219 - Charlie3 DNA MER1_type 0 2712 2646 234 227 0 53 chr4 30059538 30059613 -154229049 + CT-rich Low_complexity Low_complexity 1 71 0 612 269 41 29 chr4 30059927 30060169 -154228493 + MER112 DNA MER1_type 8 252 -8 430 368 89 10 chr4 30060590 30060993 -154227669 + L2 LINE L2 2725 3187 -85 1602 191 11 14 chr4 30061335 30061618 -154227044 - AluJo SINE Alu -10 302 21 266 290 14 0 chr4 30062223 30062292 -154226370 - MIR SINE MIR -57 151 82 300 387 0 7 chr4 30062528 30062670 -154225992 + L3 LINE CR1 1391 1531 -46 314 270 0 0 chr4 30062672 30062746 -154225916 + MER5A DNA MER1_type 1 74 -115 551 300 6 6 chr4 30062746 30062906 -154225756 - MER52A LTR ERV1 0 1755 1596 890 247 34 119 chr4 30062906 30063346 -154225316 - MER52A LTR ERV1 -23 478 343 2189 140 0 3 chr4 30063475 30063782 -154224880 + AluSx SINE Alu 1 306 -6 521 231 17 0 chr4 30063814 30063931 -154224731 - LTR28 LTR ERV1 -871 149 31 2016 129 21 0 chr4 30064811 30065091 -154223571 + AluSx SINE Alu 1 286 -26 180 0 0 0 chr4 30065656 30065676 -154222986 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1696 147 17 51 chr4 30065678 30065970 -154222692 - AluJo SINE Alu -30 282 1 229 326 68 23 chr4 30066500 30066632 -154222030 + MIR SINE MIR 50 187 -75 686 174 36 18 chr4 30066712 30066879 -154221783 + L1M4 LINE L1 4560 4729 -1417 2034 196 42 74 chr4 30066879 30067445 -154221217 - MLT2B3 LTR ERVL -6 548 1 702 259 99 18 chr4 30067445 30067812 -154220850 + L1M4 LINE L1 4750 5154 -992 279 293 30 36 chr4 30068133 30068275 -154220387 - MIR SINE MIR -65 143 21 476 271 113 23 chr4 30068614 30068791 -154219871 - MIR3 SINE MIR 0 208 16 502 221 0 0 chr4 30069244 30069348 -154219314 + MSTD LTR MaLR 23 126 -270 182 309 75 64 chr4 30070341 30070435 -154218227 - L3b LINE CR1 -73 1510 1416 2311 122 0 3 chr4 30070747 30071051 -154217611 + AluSx SINE Alu 1 303 -9 1959 141 0 7 chr4 30071210 30071507 -154217155 + AluSx SINE Alu 1 295 -17 197 297 141 45 chr4 30071641 30071817 -154216845 + MIR SINE MIR 21 212 -50 354 275 0 58 chr4 30072166 30072286 -154216376 - L3 LINE CR1 -666 911 799 247 374 28 8 chr4 30072343 30072571 -154216091 - L3 LINE CR1 -916 661 361 606 219 139 33 chr4 30073521 30073736 -154214926 + MIR SINE MIR 13 250 -12 261 295 189 33 chr4 30075271 30075393 -154213269 + MIR SINE MIR 48 188 -74 585 313 0 0 chr4 30075522 30075685 -154212977 - MIR SINE MIR -98 164 2 309 232 7 56 chr4 30076402 30076544 -154212118 + G-rich Low_complexity Low_complexity 5 139 0 21 0 0 0 chr4 30076579 30076600 -154212062 + GC_rich Low_complexity Low_complexity 1 21 0 191 236 18 36 chr4 30077713 30077768 -154210894 - MIR SINE MIR -12 250 197 184 227 0 0 chr4 30077760 30077804 -154210858 - L2 LINE L2 -5 3308 3265 * 229 220 0 20 chr4 30077885 30077935 -154210727 - L2 LINE L2 -8 3305 3257 1382 132 5 0 chr4 30078250 30078447 -154210215 + AluSq SINE Alu 104 301 -12 349 289 51 66 chr4 30078618 30078732 -154209930 - L1MEc LINE L1 -4688 1708 1594 2472 52 0 7 chr4 30078732 30079022 -154209640 + AluY SINE Alu 8 295 -16 349 289 51 66 chr4 30079022 30079163 -154209499 - L1MEc LINE L1 -4802 1594 1457 539 327 156 30 chr4 30080639 30081533 -154207129 - L2 LINE L2 -4 3309 2310 3014 211 70 42 chr4 30081757 30082273 -154206389 + L1ME2 LINE L1 4886 5386 -778 2185 111 7 7 chr4 30082273 30082579 -154206083 + AluSg SINE Alu 5 310 0 3014 211 70 42 chr4 30082579 30083307 -154205355 + L1ME2 LINE L1 5386 6163 -1 299 277 50 0 chr4 30083328 30083429 -154205233 + L1MEd LINE L1 905 1010 -5109 1332 69 0 6 chr4 30084707 30084881 -154203781 - MER107 DNA MER1_type 0 197 25 1032 130 34 39 chr4 30084984 30085192 -154203470 - L1MD3 LINE L1 -385 7610 7404 262 163 20 0 chr4 30085192 30085241 -154203421 - MLT1F1 LTR MaLR -442 125 76 1910 165 10 3 chr4 30085567 30085876 -154202786 - AluSx SINE Alu -1 311 1 251 271 100 57 chr4 30086509 30086649 -154202013 - MIR3 SINE MIR -59 149 4 330 327 37 0 chr4 30086670 30086777 -154201885 - MIR SINE MIR -68 140 30 1849 172 0 3 chr4 30087320 30087617 -154201045 - AluJo SINE Alu -16 296 1 234 148 56 19 chr4 30087621 30087675 -154200987 - MLT1K LTR MaLR -14 574 519 421 244 0 11 chr4 30087845 30087935 -154200727 - MER5B DNA MER1_type -89 89 1 1066 191 5 5 chr4 30088686 30088875 -154199787 - MER5A DNA MER1_type 0 189 1 223 320 98 74 chr4 30089019 30089425 -154199237 - L2 LINE L2 -4 3268 2853 893 286 102 16 chr4 30089716 30090100 -154198562 - LTR16A LTR ERVL -10 440 24 200 271 120 53 chr4 30090632 30090765 -154197897 - MIR3 SINE MIR -23 185 44 622 290 68 52 chr4 30090881 30091246 -154197416 + L2 LINE L2 2373 2743 -571 3620 136 38 31 chr4 30091361 30092046 -154196616 + L1MB8 LINE L1 5488 6177 -1 2554 93 0 0 chr4 30092053 30092366 -154196296 + AluSq SINE Alu 1 313 0 2309 90 13 16 chr4 30092989 30093299 -154195363 - AluSx SINE Alu -3 309 1 231 36 0 0 chr4 30093341 30093369 -154195293 + (CA)n Simple_repeat Simple_repeat 2 29 0 387 228 70 18 chr4 30093746 30093860 -154194802 + MIR SINE MIR 19 138 -70 22 56 0 0 chr4 30093937 30093973 -154194689 + AT_rich Low_complexity Low_complexity 1 36 0 502 303 107 8 chr4 30095298 30095559 -154193103 - L1ME3 LINE L1 -7 6155 5869 311 345 51 39 chr4 30095701 30095956 -154192706 - L2 LINE L2 0 3272 3015 2695 207 47 24 chr4 30096423 30097003 -154191659 + MLT1E LTR MaLR 1 593 0 186 289 0 0 chr4 30099396 30099441 -154189221 + MIR SINE MIR 218 262 0 205 266 16 62 chr4 30099796 30099860 -154188802 - MIR3 SINE MIR -38 170 110 481 218 36 0 chr4 30100256 30100366 -154188296 + MLT1F LTR MaLR 426 539 -3 336 250 11 23 chr4 30100507 30100595 -154188067 + L2 LINE L2 3209 3295 -18 451 311 50 0 chr4 30102424 30102604 -154186058 - MER117 DNA MER1_type 0 197 9 215 305 38 48 chr4 30102709 30102814 -154185848 - MIR SINE MIR -8 254 151 291 233 78 22 chr4 30102901 30102991 -154185671 - MIR SINE MIR -147 115 21 228 316 69 52 chr4 30103137 30103311 -154185351 + L2 LINE L2 2829 3005 -267 1100 133 6 6 chr4 30103314 30103479 -154185183 - AluJo/FRAM SINE Alu -8 304 140 385 190 51 0 chr4 30303482 30303561 -153985101 + MIR3 SINE MIR 100 182 -26 951 130 7 0 chr4 30305723 30305869 -153982793 - AluJb SINE Alu -165 147 1 502 273 42 30 chr4 30305931 30305944 -153982718 - L2 LINE L2 -15 3298 3287 722 183 8 30 chr4 30305944 30306075 -153982587 + FLAM_A SINE Alu 4 131 -2 502 273 42 30 chr4 30306075 30306226 -153982436 - L2 LINE L2 -26 3287 3132 2123 113 3 3 chr4 30306307 30306616 -153982046 + AluSc SINE Alu 1 309 0 1425 81 0 0 chr4 30306852 30307038 -153981624 - AluY SINE Alu -9 302 117 1496 114 188 8 chr4 30307159 30307414 -153981248 + AluSx SINE Alu 1 301 -11 284 224 133 86 chr4 30307977 30308187 -153980475 + AluSq SINE Alu 84 303 0 * 545 144 133 61 chr4 30308184 30308214 -153980448 + Charlie5 DNA MER1_type 53 79 -2545 1906 103 8 0 chr4 30308214 30308477 -153980185 - AluSg SINE Alu -12 298 34 545 144 133 61 chr4 30308477 30308627 -153980035 + Charlie5 DNA MER1_type 79 246 -2378 585 150 8 55 chr4 30308638 30308765 -153979897 - AluSg/x SINE Alu 0 309 189 276 30 0 0 chr4 30308872 30308905 -153979757 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 608 323 9 18 chr4 30309504 30309721 -153978941 - MIR SINE MIR -40 222 8 797 152 0 0 chr4 30309727 30309852 -153978810 - AluJ SINE Alu -5 307 183 827 136 48 0 chr4 30309861 30309986 -153978676 - AluJ SINE Alu -171 131 1 1847 145 0 26 chr4 30309998 30310308 -153978354 - AluSx SINE Alu -10 302 1 440 289 54 12 chr4 30310445 30310611 -153978051 + MIR SINE MIR 33 205 -57 187 261 22 0 chr4 30310666 30310712 -153977950 - L3 LINE CR1 -204 1373 1327 1171 178 15 5 chr4 30310726 30310923 -153977739 - MLT1C LTR MaLR 0 467 269 315 49 0 0 chr4 30311119 30311160 -153977502 + (TG)n Simple_repeat Simple_repeat 2 42 0 1818 122 0 34 chr4 30311160 30311455 -153977207 - AluSx SINE Alu -27 285 1 306 339 0 57 chr4 30311463 30311559 -153977103 - L3 LINE CR1 -820 757 668 2290 173 106 36 chr4 30311559 30312086 -153976576 - LTR6A LTR ERV1 0 564 1 306 339 0 57 chr4 30312086 30312113 -153976549 - L3 LINE CR1 -909 668 641 560 196 51 38 chr4 30312168 30312326 -153976336 + MER106B DNA MER1_type 897 1056 -3 636 81 0 0 chr4 30312506 30312593 -153976069 + (TCTCC)n Simple_repeat Simple_repeat 2 88 0 1475 137 0 4 chr4 30312593 30312819 -153975843 - AluSg/x SINE Alu -3 307 83 21 0 0 0 chr4 30312995 30313016 -153975646 + AT_rich Low_complexity Low_complexity 1 21 0 1241 118 0 6 chr4 30313126 30313304 -153975358 + AluSg/x SINE Alu 112 288 -24 2122 135 0 0 chr4 30313419 30313731 -153974931 + AluJb SINE Alu 1 312 0 219 246 123 0 chr4 30313779 30313836 -153974826 - MIR SINE MIR -2 260 197 216 0 0 0 chr4 30314225 30314249 -153974413 + (T)n Simple_repeat Simple_repeat 1 24 0 691 185 0 8 chr4 30314300 30314419 -153974243 + AluSq/x SINE Alu 33 150 -162 951 118 139 145 chr4 30314524 30314683 -153973979 + Charlie5 DNA MER1_type 530 688 -1936 1936 116 10 3 chr4 30314683 30314976 -153973686 + AluSp SINE Alu 1 295 -18 951 118 139 145 chr4 30314976 30315147 -153973515 + Charlie5 DNA MER1_type 688 858 -1766 1334 189 3 46 chr4 30315210 30315517 -153973145 - AluJo SINE Alu -18 294 1 323 178 0 27 chr4 30315536 30315609 -153973053 + Charlie5 DNA MER1_type 834 904 -1708 1965 131 3 7 chr4 30315793 30316099 -153972563 + AluSg SINE Alu 1 305 -5 1153 132 0 0 chr4 30316591 30316765 -153971897 + AluSg/x SINE Alu 137 310 -2 1132 95 12 12 chr4 30316874 30317043 -153971619 + AluSq SINE Alu 1 169 -144 1146 104 0 0 chr4 30317143 30317326 -153971336 + AluSq SINE Alu 130 312 0 1361 251 81 26 chr4 30317348 30317453 -153971209 + L1ME3A LINE L1 5383 5481 -689 2077 126 10 0 chr4 30317453 30317747 -153970915 + AluSx SINE Alu 1 297 -15 1361 251 81 26 chr4 30317747 30318174 -153970488 + L1ME3A LINE L1 5481 5944 -226 1069 221 108 82 chr4 30318340 30318720 -153969942 - L2 LINE L2 0 3313 2924 276 261 238 0 chr4 30319004 30319147 -153969515 + MIR SINE MIR 24 203 -59 2169 106 0 3 chr4 30319299 30319600 -153969062 - AluSx SINE Alu -12 300 1 669 191 23 118 chr4 30319752 30319788 -153968874 + MER4D LTR ERV1 684 722 -181 1737 158 6 22 chr4 30319788 30320105 -153968557 - AluJb SINE Alu 0 312 1 669 191 23 118 chr4 30320105 30320288 -153968374 + MER4D LTR ERV1 722 882 -21 2258 43 4 0 chr4 30320289 30320568 -153968094 + AluY SINE Alu 1 280 -31 207 0 0 0 chr4 30320571 30320594 -153968068 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2089 106 0 0 chr4 30320814 30321106 -153967556 + AluSx SINE Alu 1 292 -20 189 0 0 0 chr4 30321156 30321177 -153967485 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 287 273 0 61 chr4 30321640 30321772 -153966890 - L2 LINE L2 -223 3049 2926 696 212 106 20 chr4 30322047 30322100 -153966562 - L1MC4 LINE L1 -399 7643 7596 489 34 0 0 chr4 30322100 30322159 -153966503 + (TCTA)n Simple_repeat Simple_repeat 1 59 0 696 212 106 20 chr4 30322159 30322303 -153966359 - L1MC4 LINE L1 -446 7596 7429 2182 109 0 0 chr4 30322854 30323156 -153965506 + AluSx SINE Alu 1 302 -10 599 185 17 34 chr4 30323156 30323275 -153965387 - FLAM_A SINE Alu -16 117 1 620 266 18 53 chr4 30323281 30323507 -153965155 + L2 LINE L2 3095 3312 -1 2011 119 3 0 chr4 30323873 30324168 -153964494 + AluSx SINE Alu 2 297 -15 340 244 131 50 chr4 30324698 30324858 -153963804 + MIR SINE MIR 89 261 -1 2108 122 0 0 chr4 30324934 30325230 -153963432 - AluSx SINE Alu -16 296 1 21 36 0 0 chr4 30325310 30325338 -153963324 + AT_rich Low_complexity Low_complexity 1 28 0 198 77 19 39 chr4 30325432 30325484 -153963178 + (TTTTTA)n Simple_repeat Simple_repeat 3 53 0 1934 210 60 29 chr4 30325585 30326071 -153962591 - L1ME1 LINE L1 -279 5887 5387 2142 116 0 10 chr4 30326071 30326381 -153962281 - AluSx SINE Alu -5 307 1 2372 94 0 0 chr4 30326381 30326688 -153961974 - AluSc SINE Alu -1 308 1 1825 129 14 7 chr4 30326794 30327118 -153961544 - AluSx SINE Alu 0 333 8 854 150 0 0 chr4 30327609 30327736 -153960926 + FLAM_C SINE Alu 1 127 -6 2067 52 37 80 chr4 30327757 30328081 -153960581 + AluY SINE Alu 1 310 -1 535 221 111 102 chr4 30328164 30328252 -153960410 - MIR SINE MIR -33 229 143 2104 100 0 7 chr4 30328252 30328543 -153960119 - AluSg SINE Alu -21 289 1 535 221 111 102 chr4 30328543 30328680 -153959982 - MIR SINE MIR -119 143 2 2046 112 0 10 chr4 30328946 30329249 -153959413 - AluSq SINE Alu -13 300 1 1840 139 0 27 chr4 30329257 30329552 -153959110 - AluSx SINE Alu -25 287 1 563 152 0 0 chr4 30329552 30329631 -153959031 - AluJ/FLAM SINE Alu -230 82 4 1858 139 10 7 chr4 30330815 30331110 -153957552 + AluSx SINE Alu 1 296 -16 32 0 0 0 chr4 30331220 30331252 -153957410 + AT_rich Low_complexity Low_complexity 1 32 0 545 147 0 20 chr4 30331257 30331359 -153957303 + AluJb SINE Alu 208 307 -5 1998 106 0 7 chr4 30331359 30331643 -153957019 - AluSx SINE Alu -30 282 1 1799 274 183 20 chr4 30331775 30332071 -153956591 + L2 LINE L2 1772 2018 -1295 869 225 120 0 chr4 30332071 30332271 -153956391 + MER58A DNA MER1_type 1 224 0 1799 274 183 20 chr4 30332271 30333030 -153955632 + L2 LINE L2 2018 2997 -316 898 91 8 0 chr4 30333036 30333157 -153955505 - AluSq/x SINE Alu -179 133 12 1771 164 3 7 chr4 30333171 30333481 -153955181 - AluSc SINE Alu 0 309 1 571 133 22 172 chr4 30333774 30333954 -153954708 - L2 LINE L2 -50 3263 3111 1476 156 28 38 chr4 30333975 30334295 -153954367 + L1MC2 LINE L1 6025 6341 -3 213 65 0 0 chr4 30334316 30334347 -153954315 + (A)n Simple_repeat Simple_repeat 1 31 0 221 284 21 84 chr4 30335078 30335173 -153953489 - L2 LINE L2 -56 3216 3128 1411 234 46 9 chr4 30335236 30335414 -153953248 + MLT1A2 LTR MaLR 1 171 -203 297 0 0 0 chr4 30335414 30335447 -153953215 + (TC)n Simple_repeat Simple_repeat 2 34 0 1411 234 46 9 chr4 30335447 30335618 -153953044 + MLT1A2 LTR MaLR 171 363 -11 346 349 34 0 chr4 30336060 30336203 -153952459 + MIR SINE MIR 23 176 -32 799 226 12 0 chr4 30336208 30336372 -153952290 + L1ME LINE L1 5504 5669 -493 2139 89 7 0 chr4 30336373 30336809 -153951853 + AluSp SINE Alu 1 438 0 4759 113 9 11 chr4 30336816 30337874 -153950788 + L1MA3 LINE L1 4859 6092 -213 1921 88 3 103 chr4 30338070 30338401 -153950261 + AluSc SINE Alu 1 298 -11 1290 173 90 25 chr4 30338406 30338683 -153949979 - AluJb SINE Alu -16 296 2 275 256 135 38 chr4 30339542 30339675 -153948987 + MIR SINE MIR 46 191 -71 1560 190 31 0 chr4 30339792 30340081 -153948581 + AluJo SINE Alu 1 298 -14 804 140 0 22 chr4 30340083 30340219 -153948443 + AluJo/FLAM SINE Alu 1 133 -169 2144 108 13 3 chr4 30340219 30340526 -153948136 + AluSg SINE Alu 1 310 0 535 306 52 5 chr4 30340887 30341080 -153947582 - MIR SINE MIR -42 220 19 1750 95 0 28 chr4 30341124 30341204 -153947458 + AluSx SINE Alu 60 141 -171 2360 63 3 0 chr4 30341204 30341504 -153947158 + AluY SINE Alu 1 301 -10 1750 95 0 28 chr4 30341504 30341675 -153946987 + AluSx SINE Alu 141 304 -8 744 146 24 0 chr4 30342016 30342139 -153946523 - FLAM_A SINE Alu -4 129 4 185 271 84 56 chr4 30342893 30343000 -153945662 - MIR SINE MIR -116 146 37 362 193 0 12 chr4 30343041 30343124 -153945538 + GA-rich Low_complexity Low_complexity 5 86 0 550 255 138 11 chr4 30344205 30344393 -153944269 + MIR SINE MIR 9 220 -42 23 0 0 0 chr4 30344654 30344677 -153943985 + AT_rich Low_complexity Low_complexity 1 23 0 747 154 0 8 chr4 30344685 30344802 -153943860 + FLAM_C SINE Alu 10 125 -18 375 234 109 63 chr4 30344840 30345015 -153943647 - L1ME3 LINE L1 -70 6092 5910 245 167 125 0 chr4 30345016 30345064 -153943598 + MER63B DNA MER1_type 1 54 -382 491 178 0 9 chr4 30345071 30345178 -153943484 + GA-rich Low_complexity Low_complexity 3 108 0 1322 228 41 33 chr4 30345178 30345215 -153943447 + MER63B DNA MER1_type 40 75 -987 2432 56 0 0 chr4 30345215 30345517 -153943145 - AluY SINE Alu -9 302 1 1322 228 41 33 chr4 30345517 30345873 -153942789 + MER63B DNA MER1_type 75 436 0 1373 218 50 82 chr4 30345873 30345947 -153942715 - L1ME3 LINE L1 -246 5916 5841 1639 183 7 0 chr4 30345947 30346237 -153942425 - AluJb SINE Alu -20 292 1 1373 218 50 82 chr4 30346237 30346685 -153941977 - L1ME3 LINE L1 -321 5841 5411 473 167 0 0 chr4 30346707 30346779 -153941883 - AluJ/FLAM SINE Alu -239 73 2 386 319 34 8 chr4 30346784 30346903 -153941759 - L1ME4a LINE L1 -5 6116 5995 336 210 190 0 chr4 30346918 30347018 -153941644 - L1ME4a LINE L1 -237 5884 5766 1873 114 62 3 chr4 30347255 30347544 -153941118 + AluSx SINE Alu 1 306 -6 1003 144 0 17 chr4 30347544 30347717 -153940945 + AluSc SINE Alu 132 301 -8 518 224 121 24 chr4 30347806 30347971 -153940691 + MIR SINE MIR 32 212 -50 1734 131 33 33 chr4 30348930 30349235 -153939427 - AluSq SINE Alu -6 307 3 317 347 67 20 chr4 30349269 30349569 -153939093 + L2 LINE L2 1804 2117 -1197 440 283 18 60 chr4 30350266 30350348 -153938314 + MER20B DNA MER1_type 95 168 -615 1995 122 17 0 chr4 30350348 30350643 -153938019 + AluSx SINE Alu 3 302 -10 440 283 18 60 chr4 30350643 30350726 -153937936 + MER20B DNA MER1_type 168 253 -530 2022 116 10 0 chr4 30350726 30351019 -153937643 + AluSx SINE Alu 1 296 -16 364 323 83 47 chr4 30351221 30351413 -153937249 + MER20B DNA MER1_type 355 553 -230 280 400 44 0 chr4 30351547 30351707 -153936955 + L2 LINE L2 3076 3242 -30 635 180 29 43 chr4 30352455 30352594 -153936068 - FLAM_C SINE Alu -2 141 5 310 273 148 23 chr4 30352597 30352725 -153935937 + MIR SINE MIR 113 256 -6 1829 138 7 10 chr4 30352941 30353245 -153935417 + AluJo SINE Alu 1 303 -9 484 234 81 24 chr4 30353481 30353605 -153935057 + L2 LINE L2 3142 3272 0 329 138 31 0 chr4 30354491 30354556 -153934106 + GA-rich Low_complexity Low_complexity 2 68 0 27 62 0 0 chr4 30354579 30354627 -153934035 + AT_rich Low_complexity Low_complexity 1 48 0 1736 121 0 4 chr4 30354799 30355048 -153933614 + AluSq SINE Alu 1 248 -65 27 0 0 0 chr4 30355266 30355293 -153933369 + AT_rich Low_complexity Low_complexity 1 27 0 330 127 48 55 chr4 30355317 30355389 -153933273 + (TATAA)n Simple_repeat Simple_repeat 1 72 -494 1866 135 0 7 chr4 30355389 30355686 -153932976 - AluSx SINE Alu -17 295 1 330 127 48 55 chr4 30355686 30355887 -153932775 + (TATAA)n Simple_repeat Simple_repeat 72 566 0 436 163 60 36 chr4 30355950 30356156 -153932506 + (TATAA)n Simple_repeat Simple_repeat 1 210 0 1583 186 7 0 chr4 30356260 30356551 -153932111 + AluJb SINE Alu 6 298 -14 299 264 48 40 chr4 30356613 30356738 -153931924 - L1M4 LINE L1 -387 5791 5666 2102 110 7 0 chr4 30356813 30357114 -153931548 - AluSx SINE Alu -1 311 9 460 324 86 33 chr4 30357736 30357946 -153930716 - L1MEd LINE L1 -5054 1065 845 853 200 17 6 chr4 30358215 30358440 -153930222 - AluJb SINE Alu 0 335 109 1713 174 10 3 chr4 30358522 30358821 -153929841 - AluJo SINE Alu -11 301 1 295 295 33 25 chr4 30359242 30359364 -153929298 + MIR SINE MIR 93 215 -47 1802 106 4 15 chr4 30359539 30359813 -153928849 + AluSx SINE Alu 1 271 -41 1784 134 7 14 chr4 30359941 30360262 -153928400 + AluSx SINE Alu 1 319 0 716 228 0 0 chr4 30360298 30360425 -153928237 + AluJo SINE Alu 1 127 -175 1134 174 5 10 chr4 30360441 30360642 -153928020 + AluJb SINE Alu 1 200 -112 225 0 0 0 chr4 30360781 30360806 -153927856 + (T)n Simple_repeat Simple_repeat 1 25 0 1295 33 5 27 chr4 30361498 30361682 -153926980 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 812 168 7 27 chr4 30361796 30361945 -153926717 + AluJo SINE Alu 137 282 -30 227 79 26 0 chr4 30361947 30361985 -153926677 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1960 131 3 16 chr4 30362076 30362389 -153926273 - AluSx SINE Alu -3 309 1 258 256 61 12 chr4 30362460 30362542 -153926120 - MIR SINE MIR 0 262 177 253 261 65 22 chr4 30362559 30362651 -153926011 + MIR SINE MIR 142 237 -25 252 268 179 27 chr4 30362675 30362787 -153925875 - MIR SINE MIR -105 157 29 1400 173 87 10 chr4 30363623 30363912 -153924750 - AluJo SINE Alu 0 312 2 387 0 0 0 chr4 30363976 30364019 -153924643 + (TG)n Simple_repeat Simple_repeat 2 44 0 758 206 40 58 chr4 30364029 30364252 -153924410 - L1ME1 LINE L1 -5 6161 5943 2035 103 14 0 chr4 30364257 30364548 -153924114 - AluSx SINE Alu -17 295 1 1021 117 7 0 chr4 30364672 30364817 -153923845 - AluSq/x SINE Alu -167 146 1 22 56 0 0 chr4 30364870 30364906 -153923756 + AT_rich Low_complexity Low_complexity 1 36 0 1708 118 46 102 chr4 30364965 30365288 -153923374 + MER7A DNA MER2_type 1 303 -43 2068 120 3 25 chr4 30365290 30365606 -153923056 - AluSg SINE Alu -1 309 1 686 179 247 12 chr4 30365606 30365768 -153922894 - AluSc SINE Alu -108 201 2 459 252 243 0 chr4 30365768 30365974 -153922688 + L2 LINE L2 3051 3306 -7 866 197 0 0 chr4 30365975 30366127 -153922535 + AluJb SINE Alu 138 289 -23 1939 121 7 0 chr4 30366353 30366658 -153922004 - AluSq SINE Alu 0 307 1 459 224 6 126 chr4 30366862 30366928 -153921734 + MIR SINE MIR 2 74 -188 543 234 138 0 chr4 30366928 30367073 -153921589 - FRAM SINE Alu -1 165 1 459 224 6 126 chr4 30367073 30367143 -153921519 + MIR SINE MIR 74 113 -149 1737 129 6 31 chr4 30367143 30367460 -153921202 - AluSg SINE Alu -1 309 1 459 224 6 126 chr4 30367460 30367505 -153921157 + MIR SINE MIR 113 162 -100 1958 144 0 0 chr4 30367608 30367913 -153920749 + AluSq SINE Alu 2 306 -7 368 308 99 17 chr4 30368020 30368192 -153920470 + MIR SINE MIR 7 192 -70 1991 143 7 0 chr4 30368363 30368670 -153919992 + AluSx SINE Alu 3 311 -1 281 293 96 60 chr4 30368842 30369009 -153919653 - L3 LINE CR1 -72 1505 1333 2259 67 7 3 chr4 30369391 30369690 -153918972 - AluY SINE Alu -11 300 1 833 270 91 59 chr4 30369965 30370404 -153918258 - MARNA DNA Mariner -68 518 60 2244 94 10 0 chr4 30370404 30370711 -153917951 - AluSx SINE Alu -2 310 1 833 270 91 59 chr4 30370711 30370764 -153917898 - MARNA DNA Mariner -526 60 10 1911 129 13 19 chr4 30371266 30371575 -153917087 - AluSx SINE Alu -5 307 1 2228 95 3 0 chr4 30372004 30372300 -153916362 + AluSg SINE Alu 1 297 -13 2252 94 3 0 chr4 30372592 30372890 -153915772 + AluSx SINE Alu 5 303 -9 1121 148 0 0 chr4 30372890 30373066 -153915596 + AluSp SINE Alu 134 309 -4 244 222 37 0 chr4 30373067 30373121 -153915541 - MIR SINE MIR -165 97 42 646 215 7 22 chr4 30373473 30373608 -153915054 + MIR SINE MIR 32 164 -98 204 40 0 0 chr4 30373746 30373771 -153914891 + (T)n Simple_repeat Simple_repeat 1 25 0 625 162 86 0 chr4 30373784 30373889 -153914773 + AluSg SINE Alu 2 115 -195 306 155 8 59 chr4 30373899 30373998 -153914664 - Alu SINE Alu 0 302 243 817 263 48 82 chr4 30374574 30374928 -153913734 + L2 LINE L2 2931 3272 0 563 194 56 0 chr4 30375019 30375127 -153913535 + FRAM SINE Alu 1 113 -63 660 143 0 0 chr4 30375234 30375374 -153913288 + (CA)n Simple_repeat Simple_repeat 2 141 0 182 45 0 0 chr4 30375673 30375695 -153912967 - MIR SINE MIR -119 143 122 2071 103 13 0 chr4 30375986 30376286 -153912376 - AluSp SINE Alu -9 304 1 968 172 0 11 chr4 30376695 30376869 -153911793 - AluJb SINE Alu -4 308 137 199 358 150 8 chr4 30376872 30376992 -153911670 - MER5B DNA MER1_type -39 139 3 386 230 115 0 chr4 30377011 30377098 -153911564 + MER5A DNA MER1_type 10 106 -83 466 197 98 23 chr4 30377438 30377570 -153911092 + MER51B LTR ERV1 1 142 -235 1813 136 15 67 chr4 30377624 30377889 -153910773 + MER51B LTR ERV1 64 341 -36 252 0 0 0 chr4 30377889 30377917 -153910745 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 2044 84 3 28 chr4 30377925 30378209 -153910453 - AluSx SINE Alu -35 277 1 1813 136 15 67 chr4 30378209 30378265 -153910397 + MER51B LTR ERV1 348 377 0 623 218 6 86 chr4 30378445 30378572 -153910090 - MER5B DNA MER1_type 0 178 67 2135 104 7 0 chr4 30378572 30378870 -153909792 - AluSx SINE Alu -12 300 1 623 218 6 86 chr4 30378870 30378916 -153909746 - MER5B DNA MER1_type -111 67 19 2033 116 3 19 chr4 30378985 30379295 -153909367 - AluSx SINE Alu -7 305 1 1727 156 31 3 chr4 30379297 30379585 -153909077 - AluSx SINE Alu -16 296 1 569 165 34 117 chr4 30379712 30379918 -153908744 + MER53 DNA DNA 1 189 0 2050 106 3 0 chr4 30380497 30380809 -153907853 + AluSx SINE Alu 1 313 0 380 299 128 62 chr4 30380843 30381531 -153907131 - L2 LINE L2 -76 3196 2450 232 330 31 10 chr4 30381577 30381674 -153906988 + L2 LINE L2 2251 2349 -965 757 185 0 0 chr4 30381707 30381826 -153906836 + AluSq/x SINE Alu 2 120 -192 27 0 0 0 chr4 30381826 30381853 -153906809 + AT_rich Low_complexity Low_complexity 1 27 0 787 193 158 68 chr4 30381853 30382145 -153906517 - MER34 LTR ERV1 -12 530 202 2080 118 0 0 chr4 30382145 30382441 -153906221 + AluSx SINE Alu 3 298 -14 787 193 158 68 chr4 30382441 30382655 -153906007 - MER34 LTR ERV1 -340 202 9 242 311 68 61 chr4 30382750 30382882 -153905780 + MIR3 SINE MIR 55 187 -21 533 338 93 4 chr4 30382908 30383145 -153905517 + MIR SINE MIR 3 260 -2 2104 120 3 3 chr4 30383161 30383470 -153905192 + AluSc SINE Alu 1 309 0 955 257 41 8 chr4 30383557 30383802 -153904860 - MIR SINE MIR 0 262 10 1348 136 0 9 chr4 30383835 30384049 -153904613 + AluSx SINE Alu 1 212 -100 228 74 0 0 chr4 30384049 30384076 -153904586 + AluSg/x SINE Alu 76 102 -198 4033 117 98 27 chr4 30384076 30385072 -153903590 - MER11A LTR ERVK 0 1266 6 1133 115 5 50 chr4 30385072 30385272 -153903390 + AluSg/x SINE Alu 95 285 -27 315 49 0 0 chr4 30385272 30385313 -153903349 + (CA)n Simple_repeat Simple_repeat 2 42 0 1363 181 100 0 chr4 30385438 30385708 -153902954 + AluJo SINE Alu 1 297 -15 343 118 20 0 chr4 30385809 30385860 -153902802 - U7 snRNA snRNA -2 61 10 2200 94 0 25 chr4 30385875 30386195 -153902467 - AluSx SINE Alu 0 312 1 2057 124 0 19 chr4 30386205 30386519 -153902143 - AluSx SINE Alu 0 312 5 1725 162 7 10 chr4 30386523 30386820 -153901842 - AluJo SINE Alu -16 296 1 1613 172 0 36 chr4 30386849 30387151 -153901511 + AluJo SINE Alu 1 291 -21 1927 126 0 24 chr4 30387154 30387447 -153901215 + AluSx SINE Alu 2 287 -25 444 307 6 18 chr4 30387481 30387510 -153901152 + MER103 DNA DNA 2 30 -136 1551 53 0 0 chr4 30387510 30387698 -153900964 + L1PA5 LINE L1 5962 6149 -5 444 307 6 18 chr4 30387698 30387834 -153900828 + MER103 DNA DNA 30 165 -1 808 172 0 0 chr4 30387980 30388114 -153900548 - AluJo SINE Alu -178 134 1 184 324 59 15 chr4 30388292 30388360 -153900302 - MER5B DNA MER1_type -39 139 69 310 268 42 0 chr4 30388426 30388497 -153900165 + MER5A DNA MER1_type 3 76 -113 1995 131 0 3 chr4 30388497 30388795 -153899867 + AluSx SINE Alu 1 297 -15 447 209 209 80 chr4 30388821 30388930 -153899732 + MER102a DNA MER1_type 144 282 -1135 489 34 0 0 chr4 30388930 30388989 -153899673 + (TTATA)n Simple_repeat Simple_repeat 1 59 0 447 209 209 80 chr4 30388989 30389042 -153899620 + MER102a DNA MER1_type 282 327 -3 282 216 81 34 chr4 30389137 30389285 -153899377 - L1ME4a LINE L1 -1 6120 5966 1487 185 7 30 chr4 30389700 30390003 -153898659 + AluJb SINE Alu 1 296 -16 2139 103 10 7 chr4 30390120 30390421 -153898241 + AluSx SINE Alu 1 302 -10 180 77 0 0 chr4 30390473 30390499 -153898163 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 2051 103 0 0 chr4 30390503 30390785 -153897877 - AluSg1 SINE Alu -27 282 1 1353 181 15 7 chr4 30390788 30391059 -153897603 - AluJo SINE Alu -15 297 25 1298 172 26 63 chr4 30391088 30391391 -153897271 - AluJb SINE Alu -20 292 1 1889 158 7 0 chr4 30391455 30391765 -153896897 - AluSx SINE Alu 0 312 1 703 311 111 26 chr4 30391786 30391972 -153896690 - L3 LINE CR1 -4 1573 1404 2205 88 0 10 chr4 30391972 30392267 -153896395 + AluSx SINE Alu 1 292 -20 703 311 111 26 chr4 30392267 30392466 -153896196 - L3 LINE CR1 -173 1404 1155 308 214 41 41 chr4 30392618 30392716 -153895946 - MLT1K LTR MaLR -2 586 489 2297 68 10 16 chr4 30392754 30393064 -153895598 + AluY SINE Alu 1 308 -3 1570 162 236 78 chr4 30393099 30393220 -153895442 - LTR29 LTR ERV1 0 622 521 2022 113 3 3 chr4 30393220 30393511 -153895151 - AluSx SINE Alu -21 291 1 1570 162 236 78 chr4 30393511 30393686 -153894976 - LTR29 LTR ERV1 -101 521 375 2093 122 0 3 chr4 30393686 30393990 -153894672 + AluSx SINE Alu 1 303 -9 1570 162 236 78 chr4 30393990 30394229 -153894433 - LTR29 LTR ERV1 -247 375 1 1962 133 7 3 chr4 30394328 30394629 -153894033 + AluSx SINE Alu 1 302 -10 865 138 17 72 chr4 30394629 30394810 -153893852 + AluJb SINE Alu 134 304 -8 526 329 79 20 chr4 30394823 30395115 -153893547 - MLT1K LTR MaLR -244 344 36 1976 140 0 25 chr4 30395140 30395461 -153893201 - AluSq SINE Alu 0 313 1 286 340 0 0 chr4 30395462 30395562 -153893100 - MIR SINE MIR -102 160 61 709 112 0 0 chr4 30395562 30395660 -153893002 + AluS SINE Alu 2 99 -214 336 143 0 0 chr4 30395908 30395964 -153892698 + (A)n Simple_repeat Simple_repeat 1 56 0 2075 96 3 3 chr4 30396579 30396870 -153891792 + AluSg SINE Alu 1 291 -19 477 0 0 0 chr4 30396873 30396926 -153891736 + (CA)n Simple_repeat Simple_repeat 2 54 0 4942 78 38 0 chr4 30397197 30397860 -153890802 - LTR12 LTR ERV1 0 688 1 575 250 30 0 chr4 30398245 30398377 -153890285 + MER113 DNA MER1_type? 234 369 -152 2212 94 0 3 chr4 30398458 30398757 -153889905 + AluSc SINE Alu 1 298 -11 328 221 39 0 chr4 30398925 30399002 -153889660 - MER45A DNA AcHobo 0 178 99 2264 92 0 10 chr4 30399003 30399317 -153889345 + AluSp SINE Alu 1 311 -2 2236 88 13 0 chr4 30399340 30399646 -153889016 + AluSx SINE Alu 1 310 -2 406 336 0 0 chr4 30399651 30399755 -153888907 - MER45A DNA AcHobo -71 107 4 877 154 0 0 chr4 30399921 30400064 -153888598 - FLAM_C SINE Alu 0 143 1 256 291 12 139 chr4 30400138 30400187 -153888475 - L2 LINE L2 -83 3189 3135 1869 136 20 13 chr4 30400187 30400488 -153888174 - AluSx SINE Alu -9 303 1 256 291 12 139 chr4 30400488 30400610 -153888052 - L2 LINE L2 -137 3135 3040 1735 150 3 30 chr4 30400691 30400991 -153887671 + AluJb SINE Alu 1 292 -20 2101 112 16 0 chr4 30400993 30401296 -153887366 + AluSx SINE Alu 1 308 -4 3856 107 37 90 chr4 30401368 30401915 -153886747 + LTR8 LTR ERV1 1 501 -190 1531 79 120 0 chr4 30401915 30402131 -153886531 + AluY SINE Alu 47 288 -23 3856 107 37 90 chr4 30402131 30402313 -153886349 + LTR8 LTR ERV1 501 691 0 1746 143 0 14 chr4 30402403 30402690 -153885972 + AluSx SINE Alu 1 283 -29 777 148 0 42 chr4 30402728 30402870 -153885792 + FLAM_C SINE Alu 5 140 -3 1047 136 0 0 chr4 30403906 30404068 -153884594 + AluSg/x SINE Alu 139 300 -12 2130 119 3 0 chr4 30404280 30404590 -153884072 - AluSx SINE Alu -1 311 1 807 146 0 76 chr4 30404704 30404848 -153883814 - FLAM_C SINE Alu -17 116 1 1621 158 0 52 chr4 30406028 30406319 -153882343 - AluSx SINE Alu -8 304 29 2303 110 0 3 chr4 30406843 30407152 -153881510 + AluSx SINE Alu 1 308 -4 24 0 0 0 chr4 30407860 30407884 -153880778 + AT_rich Low_complexity Low_complexity 1 24 0 445 235 12 100 chr4 30407888 30407942 -153880720 + L2 LINE L2 3159 3216 -97 2113 118 11 0 chr4 30407942 30408252 -153880410 + AluSx SINE Alu 1 313 0 445 235 12 100 chr4 30408252 30408271 -153880391 + L2 LINE L2 3216 3235 -78 828 191 0 0 chr4 30408271 30408397 -153880265 - FLAM_A SINE Alu -3 130 5 445 235 12 100 chr4 30408397 30408491 -153880171 + L2 LINE L2 3235 3313 0 915 201 0 18 chr4 30409403 30409572 -153879090 + FRAM SINE Alu 1 166 0 837 177 0 108 chr4 30409577 30409780 -153878882 + AluJo SINE Alu 120 300 -12 220 211 0 0 chr4 30409844 30409882 -153878780 - L2 LINE L2 -51 3262 3225 1106 239 13 32 chr4 30410078 30410454 -153878208 + MER113 DNA MER1_type? 1 369 -152 747 179 0 8 chr4 30410505 30410622 -153878040 + AluJ SINE Alu 2 117 -195 1208 133 6 0 chr4 30410623 30410796 -153877866 - AluSq SINE Alu -4 309 136 1098 122 11 75 chr4 30410802 30410829 -153877833 + AluJ SINE Alu 108 135 -172 2104 121 30 3 chr4 30410829 30411126 -153877536 + AluSx SINE Alu 3 307 -5 1098 122 11 75 chr4 30411126 30411310 -153877352 + AluJ SINE Alu 135 307 0 189 0 0 0 chr4 30411330 30411351 -153877311 + (TTTTA)n Simple_repeat Simple_repeat 3 23 0 895 138 0 38 chr4 30411352 30411512 -153877150 - L1PA10 LINE L1 -20 6148 5995 1077 141 86 0 chr4 30411673 30411871 -153876791 - MLT1B LTR MaLR 0 390 176 1142 158 0 0 chr4 30411871 30412036 -153876626 - AluSg/x SINE Alu -18 294 130 2185 116 0 3 chr4 30412042 30412336 -153876326 - AluSx SINE Alu -19 293 1 182 250 28 0 chr4 30412598 30412634 -153876028 + MER5B DNA MER1_type 9 45 -133 1127 192 28 14 chr4 30412634 30412848 -153875814 - AluJo SINE Alu -9 303 87 1982 142 14 0 chr4 30412886 30413174 -153875488 + AluJb SINE Alu 1 292 -20 1203 209 112 43 chr4 30413195 30413472 -153875190 + AluJo SINE Alu 2 297 -5 357 333 17 0 chr4 30413473 30413590 -153875072 + MER5B DNA MER1_type 57 175 -3 224 181 24 36 chr4 30413894 30413948 -153874714 + (TA)n Simple_repeat Simple_repeat 2 56 -27 2344 98 3 0 chr4 30413948 30414243 -153874419 - AluSp SINE Alu -17 296 1 224 181 24 36 chr4 30414243 30414271 -153874391 + (TA)n Simple_repeat Simple_repeat 56 83 0 425 186 233 0 chr4 30414292 30414378 -153874284 - FLAM_A SINE Alu -36 106 1 1750 191 0 16 chr4 30414413 30414717 -153873945 - AluJo SINE Alu -12 300 2 1565 184 42 0 chr4 30414729 30415017 -153873645 - AluJb SINE Alu -12 300 1 361 393 78 16 chr4 30415018 30415275 -153873387 - L2 LINE L2 -14 3258 2986 242 200 0 0 chr4 30415325 30415370 -153873292 + L2 LINE L2 3262 3306 -7 311 324 152 25 chr4 30415372 30415807 -153872855 - L2 LINE L2 -453 2861 2372 25 0 0 0 chr4 30415826 30415851 -153872811 + AT_rich Low_complexity Low_complexity 1 25 0 2178 141 0 0 chr4 30415851 30416163 -153872499 - AluJo SINE Alu 0 312 1 651 246 22 39 chr4 30416286 30416465 -153872197 + MIR SINE MIR 65 240 -22 323 289 33 0 chr4 30416516 30416606 -153872056 - MIR SINE MIR -85 177 85 602 152 0 45 chr4 30416645 30416757 -153871905 - AluSx SINE Alu 0 310 204 2200 82 41 10 chr4 30416757 30417051 -153871611 - AluYa5 SINE Alu -8 303 1 1563 113 9 5 chr4 30417053 30417265 -153871397 - AluSx SINE Alu -98 214 2 1338 179 19 4 chr4 30417707 30418026 -153870636 - MLT1A1 LTR MaLR 0 365 3 2212 127 7 0 chr4 30418284 30418592 -153870070 - AluSx SINE Alu -2 310 1 1351 133 25 0 chr4 30418849 30418891 -153869771 + AluSp SINE Alu 85 124 -193 2424 95 3 9 chr4 30418891 30419206 -153869456 + AluSp SINE Alu 1 313 0 1351 133 25 0 chr4 30419206 30419391 -153869271 + AluSp SINE Alu 124 317 0 289 0 0 0 chr4 30419359 30419416 -153869246 + (TAA)n Simple_repeat Simple_repeat 2 58 0 868 173 0 0 chr4 30419428 30419561 -153869101 + FLAM_C SINE Alu 1 133 -10 611 199 12 35 chr4 30419620 30419778 -153868884 - MER96B DNA MER1_type? -1 416 261 2184 117 0 0 chr4 30419778 30420061 -153868601 - AluSx SINE Alu -29 283 1 611 199 12 35 chr4 30420061 30420073 -153868589 - MER96B DNA MER1_type? -156 261 250 471 300 196 19 chr4 30421017 30421200 -153867462 + L2 LINE L2 2349 2498 -815 584 191 27 0 chr4 30421200 30421310 -153867352 - MER81 DNA DNA 0 114 2 471 300 196 19 chr4 30421310 30421749 -153866913 + L2 LINE L2 2498 3084 -229 1222 130 0 0 chr4 30421855 30422017 -153866645 + AluSx SINE Alu 2 163 -149 977 181 86 19 chr4 30422261 30422471 -153866191 - AluJo SINE Alu -1 311 88 2126 141 3 3 chr4 30422633 30422945 -153865717 + AluSx SINE Alu 1 312 0 23 0 0 0 chr4 30423473 30423496 -153865166 + AT_rich Low_complexity Low_complexity 1 23 0 2106 151 0 0 chr4 30423496 30423795 -153864867 - AluSx SINE Alu -13 299 1 2428 55 34 7 chr4 30423797 30424089 -153864573 - AluY SINE Alu -11 300 1 1866 120 58 0 chr4 30424143 30424441 -153864221 - AluSx SINE Alu 0 312 1 21 36 0 0 chr4 30424714 30424742 -153863920 + AT_rich Low_complexity Low_complexity 1 28 0 2170 117 7 13 chr4 30424946 30425254 -153863408 - AluSp SINE Alu -7 306 1 2003 151 0 6 chr4 30425289 30425600 -153863062 + AluSx SINE Alu 1 309 -3 182 61 0 30 chr4 30425605 30425638 -153863024 + (TAAAAA)n Simple_repeat Simple_repeat 4 35 0 189 338 14 40 chr4 30426324 30426472 -153862190 - L2 LINE L2 -1201 2113 1970 2267 113 0 0 chr4 30426472 30426763 -153861899 + AluSg SINE Alu 1 291 -19 2289 125 0 0 chr4 30426786 30427098 -153861564 + AluSx SINE Alu 1 312 0 1003 185 28 32 chr4 30427565 30427781 -153860881 - MER20 DNA MER1_type 0 219 5 278 294 54 22 chr4 30428031 30428123 -153860539 + MIR SINE MIR 40 134 -128 239 167 0 0 chr4 30428473 30428521 -153860141 - MLT1A1 LTR MaLR -14 351 304 2309 110 0 0 chr4 30428521 30428861 -153859801 + AluSq SINE Alu 1 340 0 1313 182 13 63 chr4 30428874 30429031 -153859631 - MLT1A1 LTR MaLR -63 302 167 1627 149 8 0 chr4 30429031 30429273 -153859389 - AluSg/x SINE Alu -2 310 67 1313 182 13 63 chr4 30429273 30429433 -153859229 - MLT1A1 LTR MaLR -198 167 1 2136 116 3 0 chr4 30429540 30429825 -153858837 - AluY SINE Alu -25 286 1 1073 90 0 0 chr4 30429825 30429959 -153858703 - AluYb8 SINE Alu -184 134 1 371 344 92 40 chr4 30429971 30430198 -153858464 - L1ME LINE L1 -302 5819 5581 1766 110 12 0 chr4 30430223 30430468 -153858194 + AluSg SINE Alu 1 248 -62 1063 162 0 5 chr4 30430578 30430763 -153857899 + AluSg/x SINE Alu 128 311 -1 302 306 87 37 chr4 30431391 30431633 -153857029 - L1M2 LINE L1 -4852 1997 1744 554 231 75 15 chr4 30431675 30431809 -153856853 - FLAM_A SINE Alu 0 142 1 303 232 74 0 chr4 30432884 30432979 -153855683 + MIR SINE MIR 90 191 -71 1309 209 8 15 chr4 30433001 30433269 -153855393 - AluJo SINE Alu -23 289 24 2198 113 0 10 chr4 30433304 30433596 -153855066 + AluSg1 SINE Alu 1 289 -20 29 84 0 0 chr4 30433800 30433871 -153854791 + AT_rich Low_complexity Low_complexity 1 71 0 744 150 110 8 chr4 30434089 30434216 -153854446 - AluSq/x SINE Alu -171 141 2 274 299 55 8 chr4 30434217 30434344 -153854318 + Charlie8 DNA MER1_type 96 228 -2189 1368 172 28 88 chr4 30434398 30434718 -153853944 - AluJo SINE Alu -11 301 1 2071 108 14 0 chr4 30434770 30435048 -153853614 + AluSg SINE Alu 1 282 -28 384 22 0 0 chr4 30435048 30435093 -153853569 + (CA)n Simple_repeat Simple_repeat 2 46 0 1120 116 0 72 chr4 30435104 30435285 -153853377 + AluSg/x SINE Alu 137 304 -8 410 264 81 7 chr4 30436885 30437033 -153851629 + Charlie8 DNA MER1_type 118 276 -2141 2410 72 0 10 chr4 30437106 30437399 -153851263 - AluY SINE Alu -19 292 3 1514 149 138 0 chr4 30437426 30437694 -153850968 - AluSx SINE Alu -7 305 1 22 0 0 0 chr4 30437886 30437908 -153850754 + AT_rich Low_complexity Low_complexity 1 22 0 346 298 282 0 chr4 30438641 30438822 -153849840 - MIR SINE MIR -17 245 14 25 31 0 0 chr4 30439694 30439726 -153848936 + GC_rich Low_complexity Low_complexity 1 32 0 246 371 35 0 chr4 30440336 30440452 -153848210 + MIR SINE MIR 33 152 -56 761 202 0 0 chr4 30441896 30442015 -153846647 - FLAM_C SINE Alu -23 120 2 295 191 79 0 chr4 30442197 30442260 -153846402 + MIR SINE MIR 81 148 -114 365 252 108 18 chr4 30442354 30442465 -153846197 - L2 LINE L2 -9 3263 3143 204 139 0 23 chr4 30443021 30443064 -153845598 + (CCCCCA)n Simple_repeat Simple_repeat 5 46 0 361 276 166 20 chr4 30443265 30443464 -153845198 + MIR SINE MIR 14 241 -21 495 225 135 34 chr4 30443673 30443851 -153844811 - MIR SINE MIR 0 262 67 207 385 42 21 chr4 30444272 30444368 -153844294 - L2 LINE L2 -37 3235 3138 240 150 100 62 chr4 30444482 30444562 -153844100 - L1ME LINE L1 -475 5646 5564 2295 102 3 0 chr4 30444674 30444968 -153843694 - AluSq SINE Alu -18 295 1 425 270 120 40 chr4 30445243 30445443 -153843219 - MIR SINE MIR 0 262 47 2015 142 0 3 chr4 30445523 30445811 -153842851 - AluSq SINE Alu -26 287 1 2384 97 3 0 chr4 30445992 30446292 -153842370 - AluSq SINE Alu -9 304 4 2057 92 70 0 chr4 30447106 30447377 -153841285 - AluSg SINE Alu -20 290 1 283 267 67 27 chr4 30447513 30447588 -153841074 - L2 LINE L2 -39 3274 3197 305 246 94 58 chr4 30448550 30448688 -153839974 - MIR3 SINE MIR -11 197 55 2333 92 0 3 chr4 30449287 30449591 -153839071 - AluSp SINE Alu -10 303 1 196 255 75 75 chr4 30449644 30449738 -153838924 + MIR3 SINE MIR 79 172 -36 893 172 5 68 chr4 30450638 30450859 -153837803 - MER3 DNA MER1_type 0 209 3 686 102 102 55 chr4 30451025 30451152 -153837510 - FLAM_C SINE Alu 0 133 1 2182 138 3 0 chr4 30451353 30451664 -153836998 + AluSx SINE Alu 1 312 0 227 258 32 32 chr4 30451672 30451734 -153836928 - MER91A DNA MER1_type -134 62 1 286 260 87 47 chr4 30452292 30452419 -153836243 + MIR SINE MIR 119 250 -12 2302 81 37 0 chr4 30452494 30452789 -153835873 + AluSx SINE Alu 1 306 -6 825 160 0 0 chr4 30453255 30453405 -153835257 - L1MA4A LINE L1 -4 6299 6150 192 303 10 50 chr4 30453553 30453652 -153835010 + MIR SINE MIR 109 203 -59 1725 161 14 10 chr4 30454064 30454356 -153834306 + AluSx SINE Alu 1 293 -19 349 226 86 11 chr4 30455988 30456081 -153832581 - MIR SINE MIR -67 141 42 364 164 9 21 chr4 30456175 30456411 -153832251 + AluSx SINE Alu 1 294 -8 350 325 66 7 chr4 30457007 30457158 -153831504 - MLT1J LTR MaLR -343 168 9 272 326 163 31 chr4 30458823 30459019 -153829643 + L3 LINE CR1 1279 1500 -77 2084 125 0 3 chr4 30459143 30459454 -153829208 - AluSg SINE Alu 0 310 1 459 292 58 15 chr4 30459456 30459593 -153829069 + MIR SINE MIR 50 192 -70 353 184 116 21 chr4 30459634 30459827 -153828835 - Charlie5 DNA MER1_type -44 2568 2364 379 297 158 15 chr4 30459891 30460093 -153828569 + MIR SINE MIR 13 243 -19 250 244 12 12 chr4 30460648 30460734 -153827928 + (CTG)n Simple_repeat Simple_repeat 3 88 0 776 134 0 0 chr4 30462683 30462795 -153825867 - FLAM_C SINE Alu -23 120 9 23 0 0 0 chr4 30462807 30462830 -153825832 + AT_rich Low_complexity Low_complexity 1 23 0 275 146 0 0 chr4 30463324 30463365 -153825297 - MER45A DNA AcHobo -44 134 94 * 1612 179 150 43 chr4 30463360 30463529 -153825133 - MER45B DNA AcHobo -226 814 664 2111 113 0 0 chr4 30463529 30463822 -153824840 - AluSx SINE Alu -19 293 1 1612 179 150 43 chr4 30463822 30464066 -153824596 - MER45B DNA AcHobo -376 664 357 1909 93 7 18 chr4 30464108 30464388 -153824274 + AluSq SINE Alu 1 277 -36 231 311 264 5 chr4 30464507 30464700 -153823962 + MIR SINE MIR 8 250 -12 2230 101 0 0 chr4 30465036 30465334 -153823328 - AluSx SINE Alu -14 298 1 1825 155 23 0 chr4 30465728 30466032 -153822630 + AluSx SINE Alu 1 311 -1 812 203 7 0 chr4 30466144 30466297 -153822365 - FRAM SINE Alu -12 154 1 180 330 88 22 chr4 30466303 30466394 -153822268 - MIR SINE MIR -49 213 117 1951 123 0 0 chr4 30466610 30466928 -153821734 + AluSx SINE Alu 1 312 0 2106 124 0 0 chr4 30467165 30467472 -153821190 + AluSx SINE Alu 1 307 -5 1065 186 132 8 chr4 30468201 30468321 -153820341 + AluJb SINE Alu 1 105 -207 279 0 0 0 chr4 30468321 30468352 -153820310 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1065 186 132 8 chr4 30468352 30468473 -153820189 + AluJb SINE Alu 105 272 -40 1522 166 22 50 chr4 30468473 30468579 -153820083 + AluJo SINE Alu 1 108 -204 2262 81 0 16 chr4 30468579 30468889 -153819773 - AluSq SINE Alu -8 305 1 1522 166 22 50 chr4 30468889 30469102 -153819560 + AluJo SINE Alu 108 311 -1 2053 142 0 0 chr4 30469316 30469627 -153819035 - AluSx SINE Alu -1 311 1 1863 117 7 10 chr4 30469628 30469944 -153818718 - AluSx SINE Alu 0 312 1 2055 116 0 7 chr4 30470220 30470522 -153818140 + AluSx SINE Alu 2 301 -11 310 268 42 0 chr4 30470755 30470826 -153817836 + MER5A DNA MER1_type 3 76 -113 1727 158 10 7 chr4 30470826 30471118 -153817544 + AluSx SINE Alu 1 293 -19 276 201 151 7 chr4 30471213 30471352 -153817310 - AluSc SINE Alu -20 279 121 380 153 111 0 chr4 30471508 30471580 -153817082 - AluSc SINE Alu -44 255 176 821 118 0 0 chr4 30471584 30471703 -153816959 - AluJb SINE Alu -193 119 1 3784 142 10 10 chr4 30472120 30472738 -153815924 - L1PA15 LINE L1 -125 6040 5423 1545 170 7 20 chr4 30473904 30474210 -153814452 + AluSx SINE Alu 1 302 -10 188 182 68 23 chr4 30474547 30474591 -153814071 - MER5B DNA MER1_type -108 70 25 1239 99 0 0 chr4 30474791 30474952 -153813710 - AluSq SINE Alu -130 183 23 1276 204 38 14 chr4 30474969 30475258 -153813404 - AluJo SINE Alu -11 301 6 719 140 28 84 chr4 30475379 30475558 -153813104 - AluSg/x SINE Alu -25 284 116 293 225 6 129 chr4 30475569 30475747 -153812915 - AluSg/x SINE Alu -13 287 132 1844 127 4 4 chr4 30477501 30477776 -153810886 + AluSx SINE Alu 1 275 -37 180 0 0 0 chr4 30477783 30477803 -153810859 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 355 200 89 0 chr4 30477803 30477893 -153810769 + L1M4 LINE L1 4989 5086 -1060 831 169 69 12 chr4 30477894 30478054 -153810608 - FRAM SINE Alu -8 168 1 559 178 9 0 chr4 30478054 30478161 -153810501 + L1M4 LINE L1 5080 5187 -959 449 156 220 0 chr4 30478195 30478304 -153810358 - MER51C LTR ERV1 0 640 508 1268 120 0 5 chr4 30478308 30478492 -153810170 - AluSg/x SINE Alu -25 287 105 2173 107 0 0 chr4 30478969 30479267 -153809395 - AluSx SINE Alu -14 298 1 1803 123 32 32 chr4 30479562 30479876 -153808786 - AluSx SINE Alu 0 314 1 487 180 11 0 chr4 30480211 30480300 -153808362 - AluS SINE Alu -218 94 5 2152 88 10 3 chr4 30480358 30480652 -153808010 + AluSx SINE Alu 1 296 -16 281 266 35 71 chr4 30480652 30480821 -153807841 - HAL1 LINE L1 -42 2465 2303 324 194 16 31 chr4 30481056 30481185 -153807477 + CT-rich Low_complexity Low_complexity 4 130 0 315 209 196 88 chr4 30481191 30481339 -153807323 - HAL1 LINE L1 -817 1690 1527 371 221 108 49 chr4 30481373 30481591 -153807071 + MLT1H LTR MaLR 301 549 0 1588 155 0 82 chr4 30481776 30481907 -153806755 + AluJo SINE Alu 1 141 -171 1516 140 41 62 chr4 30481907 30482199 -153806463 + AluSx SINE Alu 1 286 -26 1588 155 0 82 chr4 30482199 30482386 -153806276 + AluJo SINE Alu 141 294 -18 2009 134 3 0 chr4 30482386 30482684 -153805978 - AluSq SINE Alu -12 301 3 24 0 0 0 chr4 30483684 30483708 -153804954 + AT_rich Low_complexity Low_complexity 1 24 0 306 303 36 72 chr4 30484196 30484391 -153804271 + L1ME LINE L1 4281 4468 -1678 1212 95 0 0 chr4 30484403 30484561 -153804101 + AluSg SINE Alu 1 158 -152 1357 173 0 0 chr4 30484569 30484817 -153803845 + AluJb SINE Alu 57 304 0 227 288 0 0 chr4 30484817 30484883 -153803779 + L1ME LINE L1 4989 5054 -1092 1904 100 50 11 chr4 30484887 30485167 -153803495 + AluSq SINE Alu 1 291 -22 30 0 0 0 chr4 30485167 30485197 -153803465 + AT_rich Low_complexity Low_complexity 1 30 0 261 318 68 9 chr4 30485377 30485597 -153803065 + L1ME LINE L1 5259 5491 -671 1981 130 13 0 chr4 30485598 30485898 -153802764 + AluSq SINE Alu 1 304 -9 2028 136 3 3 chr4 30485914 30486223 -153802439 + AluSx SINE Alu 1 309 -3 305 252 117 108 chr4 30486238 30486549 -153802113 + L1ME LINE L1 5504 5820 -350 2239 101 3 0 chr4 30486549 30486847 -153801815 - AluSx SINE Alu -13 299 1 305 252 117 108 chr4 30486847 30486876 -153801786 + L1ME LINE L1 5820 5847 -323 811 114 0 79 chr4 30486899 30487023 -153801639 + FLAM_C SINE Alu 1 114 -198 183 42 0 0 chr4 30487023 30487047 -153801615 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 811 114 0 79 chr4 30487047 30487062 -153801600 + FLAM_C SINE Alu 114 129 -183 297 0 0 0 chr4 30487205 30487238 -153801424 + (CA)n Simple_repeat Simple_repeat 2 34 0 1985 82 11 11 chr4 30487268 30487550 -153801112 - AluSc SINE Alu -3 306 25 1121 162 25 0 chr4 30487654 30487776 -153800886 + MER2 DNA MER2_type 136 266 -79 1857 154 3 0 chr4 30487776 30488074 -153800588 - AluSx SINE Alu -13 299 1 1121 162 25 0 chr4 30488074 30488149 -153800513 + MER2 DNA MER2_type 266 338 -7 907 148 29 135 chr4 30488742 30488809 -153799853 + MER20 DNA MER1_type 2 75 -144 1980 114 3 19 chr4 30488809 30489124 -153799538 + AluSg SINE Alu 1 310 0 907 148 29 135 chr4 30489124 30489300 -153799362 + MER20 DNA MER1_type 75 219 0 2153 85 10 10 chr4 30489310 30489616 -153799046 + AluSc SINE Alu 1 306 -3 297 0 0 0 chr4 30489646 30489679 -153798983 + (TG)n Simple_repeat Simple_repeat 2 34 0 183 42 0 0 chr4 30489837 30489861 -153798801 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 841 108 0 8 chr4 30489861 30489981 -153798681 - AluSg SINE Alu -191 119 1 306 303 36 72 chr4 30489993 30490188 -153798474 - L1 LINE L1 -1678 4468 4281 758 271 104 0 chr4 30490445 30490666 -153797996 - Charlie8 DNA MER1_type -2141 276 33 1978 130 3 24 chr4 30490765 30491118 -153797544 - MER4A LTR ERV1 0 664 261 664 111 0 10 chr4 30491118 30491217 -153797445 - MER4A LTR ERV1 -566 98 1 1740 164 31 68 chr4 30491589 30491734 -153796928 + MLT1B LTR MaLR 1 150 -240 2123 97 0 17 chr4 30491734 30492033 -153796629 - AluSx SINE Alu -12 300 7 1740 164 31 68 chr4 30492033 30492391 -153796271 + MLT1B LTR MaLR 150 390 0 1942 150 0 0 chr4 30492498 30492798 -153795864 + AluSx SINE Alu 1 300 -12 297 242 153 33 chr4 30492798 30492943 -153795719 - LTR16A LTR ERVL -97 360 182 705 137 43 81 chr4 30492981 30493142 -153795520 + MER20B DNA MER1_type 65 219 0 340 333 45 6 chr4 30493142 30493319 -153795343 - LTR16A1 LTR ERVL -255 202 19 1188 139 26 5 chr4 30493390 30493584 -153795078 + MSTA LTR MaLR 1 198 -230 27 0 0 0 chr4 30493584 30493611 -153795051 + AT_rich Low_complexity Low_complexity 1 27 0 1624 134 38 4 chr4 30493621 30493883 -153794779 + AluSx SINE Alu 1 271 -41 203 193 18 0 chr4 30493886 30493943 -153794719 + (TA)n Simple_repeat Simple_repeat 1 58 0 1552 148 12 8 chr4 30493966 30494210 -153794452 + MSTA LTR MaLR 184 428 0 642 259 45 25 chr4 30494210 30494411 -153794251 - MIR SINE MIR -38 224 20 243 0 0 0 chr4 30494913 30494940 -153793722 + (CA)n Simple_repeat Simple_repeat 2 28 0 286 235 111 12 chr4 30496506 30496587 -153792075 + MIR3 SINE MIR 111 199 -9 1283 200 97 29 chr4 30497103 30497286 -153791376 + MER58B DNA MER1_type 11 225 -2195 2267 93 0 3 chr4 30497286 30497599 -153791063 + AluSx SINE Alu 1 312 0 1283 200 97 29 chr4 30497599 30497725 -153790937 + MER58B DNA MER1_type 225 341 0 231 176 33 0 chr4 30498960 30499051 -153789611 + (TA)n Simple_repeat Simple_repeat 2 95 0 2175 91 3 0 chr4 30499163 30499450 -153789212 + AluSp SINE Alu 1 288 -25 189 0 0 0 chr4 30499456 30499477 -153789185 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 265 225 0 36 chr4 30499731 30499866 -153788796 + AluJ/monomer SINE Alu 244 297 -5 2020 108 0 0 chr4 30499895 30500181 -153788481 + AluSx SINE Alu 19 304 -8 1902 131 28 0 chr4 30500365 30500655 -153788007 - AluSq SINE Alu -15 298 1 686 272 34 15 chr4 30500665 30500871 -153787791 - MIR SINE MIR -45 217 8 1965 128 7 0 chr4 30501444 30501763 -153786899 + AluSx SINE Alu 1 321 0 2109 104 3 0 chr4 30501763 30502050 -153786612 + AluSp SINE Alu 1 288 -25 189 0 0 0 chr4 30502056 30502077 -153786585 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 1007 157 0 0 chr4 30502094 30502253 -153786409 - AluSg/x SINE Alu -15 295 137 494 279 109 12 chr4 30502377 30502542 -153786120 + MER5A DNA MER1_type 9 189 0 809 201 38 0 chr4 30502546 30502755 -153785907 + MER20B DNA MER1_type 567 783 0 1459 192 51 10 chr4 30502819 30502994 -153785668 - AluJo SINE Alu -8 304 111 315 0 0 0 chr4 30502994 30503029 -153785633 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 1459 192 51 10 chr4 30503029 30503145 -153785517 - AluJo SINE Alu -201 111 1 427 219 19 48 chr4 30503166 30503271 -153785391 + MIR3 SINE MIR 92 193 -15 551 282 75 55 chr4 30504171 30504426 -153784236 - MIR SINE MIR -1 261 2 2293 99 0 0 chr4 30504728 30505040 -153783622 + AluSx SINE Alu 1 312 0 207 0 0 0 chr4 30505200 30505223 -153783439 + (A)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr4 30505230 30505251 -153783411 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 30505809 30505830 -153782832 + AT_rich Low_complexity Low_complexity 1 21 0 1949 149 0 0 chr4 30505932 30506228 -153782434 + AluSx SINE Alu 2 297 -15 879 158 0 0 chr4 30506423 30506556 -153782106 - AluSq/x SINE Alu -179 133 1 4686 114 48 7 chr4 30507660 30508385 -153780277 - L1PA13 LINE L1 -1 6162 5408 955 219 26 17 chr4 30508535 30508768 -153779894 - MIR SINE MIR -18 244 10 1794 123 0 0 chr4 30508947 30509198 -153779464 - AluSq SINE Alu -62 251 1 254 251 34 86 chr4 30509322 30509655 -153779007 + L1M2 LINE L1 5265 5586 -656 2125 131 16 7 chr4 30509685 30509991 -153778671 - AluSx SINE Alu -3 309 1 224 333 45 38 chr4 30510137 30510269 -153778393 + L2 LINE L2 3140 3272 0 350 216 11 23 chr4 30510810 30510898 -153777764 + FLAM SINE Alu 47 133 0 780 200 7 0 chr4 30510935 30511085 -153777577 - MLT1B LTR MaLR -213 177 27 697 225 77 28 chr4 30511143 30511349 -153777313 - MLT1G3 LTR MaLR -107 435 180 368 224 0 0 chr4 30511357 30511424 -153777238 - MLT1G3 LTR MaLR -500 67 1 2059 88 78 0 chr4 30511536 30511820 -153776842 - AluSg SINE Alu -4 306 1 701 153 221 0 chr4 30512514 30512585 -153776077 + MER96 DNA MER1_type? 13 67 -108 1115 219 132 47 chr4 30512585 30512950 -153775712 - MSTD LTR MaLR 0 396 1 701 153 221 0 chr4 30512950 30513009 -153775653 + MER96 DNA MER1_type? 67 172 -3 1682 132 0 0 chr4 30513133 30513368 -153775294 - AluSx SINE Alu -15 297 63 464 225 58 0 chr4 30514425 30514545 -153774117 + MIR SINE MIR 37 163 -99 2132 122 3 0 chr4 30514846 30515164 -153773498 + AluSq SINE Alu 1 319 0 251 277 36 0 chr4 30515165 30515248 -153773414 - MIR SINE MIR -48 214 129 2017 121 18 0 chr4 30515368 30515648 -153773014 + AluSx SINE Alu 1 285 -27 654 105 11 0 chr4 30515677 30515772 -153772890 - L1MB5 LINE L1 -15 6159 6064 1000 185 12 0 chr4 30515773 30515946 -153772716 - AluJb SINE Alu -4 308 134 2437 92 0 0 chr4 30515946 30516250 -153772412 - AluSg SINE Alu -6 304 1 1042 190 5 24 chr4 30516250 30516461 -153772201 - L1MB5 LINE L1 -104 6070 5864 1084 139 6 0 chr4 30516468 30516634 -153772028 - AluSg/x SINE Alu -12 300 134 201 256 26 39 chr4 30516681 30516759 -153771903 - MIR SINE MIR -57 205 129 528 127 59 51 chr4 30516789 30516907 -153771755 - L1M LINE L1 -811 5373 5255 2613 164 34 69 chr4 30516967 30517247 -153771415 - L1MB5 LINE L1 -294 5880 5592 2225 108 0 40 chr4 30517247 30517571 -153771091 + AluSx SINE Alu 1 311 -1 2613 164 34 69 chr4 30517571 30518032 -153770630 - L1MB5 LINE L1 -582 5592 5179 2117 145 0 0 chr4 30518032 30518335 -153770327 - AluSx SINE Alu -9 303 1 1775 173 3 28 chr4 30518336 30518654 -153770008 - AluJo SINE Alu -1 311 2 457 238 0 0 chr4 30518656 30518757 -153769905 - AluJo/FLAM SINE Alu -181 131 31 2992 162 26 95 chr4 30518777 30519314 -153769348 + MER51C LTR ERV1 1 573 -67 2306 113 0 3 chr4 30519314 30519623 -153769039 - AluSg SINE Alu -2 308 1 2992 162 26 95 chr4 30519623 30519658 -153769004 + MER51C LTR ERV1 573 522 -118 2102 122 0 7 chr4 30519658 30519946 -153768716 + AluSx SINE Alu 2 287 -25 2992 162 26 95 chr4 30519946 30520059 -153768603 + MER51C LTR ERV1 521 640 0 563 178 9 0 chr4 30520093 30520200 -153768462 - L1MB5 LINE L1 -959 5187 5080 824 161 71 13 chr4 30520200 30520355 -153768307 + FRAM SINE Alu 1 163 -13 781 199 37 65 chr4 30520356 30520451 -153768211 - L1MB5 LINE L1 -1055 5091 4995 180 0 0 0 chr4 30520451 30520471 -153768191 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2244 79 0 18 chr4 30520478 30520758 -153767904 - AluSx SINE Alu -37 275 1 781 199 37 65 chr4 30520758 30520870 -153767792 - L1MB5 LINE L1 -1157 4989 4882 22 0 0 0 chr4 30521108 30521130 -153767532 + AT_rich Low_complexity Low_complexity 1 22 0 1919 145 35 0 chr4 30521284 30521574 -153767088 - AluSx SINE Alu -10 302 3 195 276 40 0 chr4 30521576 30521652 -153767010 + MIR SINE MIR 161 239 -23 251 27 0 27 chr4 30521670 30521707 -153766955 + (ATG)n Simple_repeat Simple_repeat 2 37 0 2185 114 3 3 chr4 30521807 30522114 -153766548 - AluSx SINE Alu -5 307 1 250 323 38 19 chr4 30522546 30522704 -153765958 + L1ME LINE L1 4795 4955 -1191 1994 131 3 3 chr4 30522705 30523101 -153765561 - AluSx SINE Alu 0 396 1 665 168 0 0 chr4 30523440 30523547 -153765115 + FLAM_C SINE Alu 2 108 -35 25 0 0 0 chr4 30523555 30523580 -153765082 + AT_rich Low_complexity Low_complexity 1 25 0 1593 219 74 39 chr4 30523580 30524096 -153764566 + L1MC4a LINE L1 5409 5942 -1866 893 278 127 9 chr4 30524262 30524870 -153763792 + L1ME LINE L1 5128 5814 -348 2048 159 0 0 chr4 30525074 30525383 -153763279 + AluSx SINE Alu 1 309 -3 329 58 19 0 chr4 30525383 30525435 -153763227 + L1MA3 LINE L1 6253 6305 0 2256 102 0 0 chr4 30525614 30525907 -153762755 + AluSx SINE Alu 2 294 -18 529 228 117 33 chr4 30525956 30526136 -153762526 + MIR SINE MIR 45 239 -23 2141 110 3 0 chr4 30527124 30527406 -153761256 + AluSp SINE Alu 1 283 -30 225 0 0 0 chr4 30527410 30527435 -153761227 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 276 261 34 11 chr4 30530012 30530100 -153758562 + MLT1I LTR MaLR 57 146 -263 831 262 118 42 chr4 30530162 30530662 -153758000 - MER34 LTR ERV1 -4 538 1 4035 159 30 13 chr4 30530726 30530854 -153757808 - LTR62 LTR ERVK -2 717 593 917 137 0 0 chr4 30530854 30530985 -153757677 - FLAM_C SINE Alu -1 132 2 4035 159 30 13 chr4 30530985 30531561 -153757101 - LTR62 LTR ERVK -126 593 1 2014 140 0 31 chr4 30532366 30532688 -153755974 + AluJb SINE Alu 1 312 0 2375 85 13 0 chr4 30532689 30533041 -153755621 + AluY SINE Alu 1 356 0 3709 137 9 67 chr4 30533367 30533547 -153755115 - MER41B LTR ERV1 0 635 446 2145 115 7 0 chr4 30533547 30533842 -153754820 - AluSx SINE Alu -15 297 1 3709 137 9 67 chr4 30533842 30534333 -153754329 - MER41B LTR ERV1 -189 446 3 21 0 0 0 chr4 30534455 30534476 -153754186 + AT_rich Low_complexity Low_complexity 1 21 0 2458 87 0 10 chr4 30534476 30534786 -153753876 + AluSg SINE Alu 1 307 -3 1211 158 30 107 chr4 30535034 30535273 -153753389 - MLT1B LTR MaLR -2 388 181 2319 88 0 13 chr4 30535273 30535580 -153753082 - AluSc SINE Alu -6 303 1 1211 158 30 107 chr4 30535580 30535676 -153752986 - MLT1B LTR MaLR -209 181 79 238 280 53 15 chr4 30536674 30536806 -153751856 + L2 LINE L2 2885 3021 -251 1193 122 269 12 chr4 30536873 30537118 -153751544 + AluSg1 SINE Alu 1 308 -1 1733 221 89 63 chr4 30537118 30537660 -153751002 + MER49 LTR ERV1 19 756 -167 2225 119 0 0 chr4 30537660 30537963 -153750699 + AluSx SINE Alu 1 303 -9 1733 221 89 63 chr4 30537963 30538136 -153750526 + MER49 LTR ERV1 756 923 0 303 93 0 0 chr4 30538139 30538182 -153750480 + (TTC)n Simple_repeat Simple_repeat 3 45 0 1764 78 149 30 chr4 30538184 30538452 -153750210 - AluSq SINE Alu -13 300 1 2220 107 0 7 chr4 30538975 30539274 -153749388 + AluSx SINE Alu 1 297 -15 1524 234 47 38 chr4 30539567 30540019 -153748643 - L1ME2 LINE L1 -9 6155 5700 1870 154 0 4 chr4 30540019 30540299 -153748363 + AluSx SINE Alu 1 279 -33 198 191 0 0 chr4 30540299 30540341 -153748321 + GA-rich Low_complexity Low_complexity 1 42 0 387 208 104 0 chr4 30540348 30540444 -153748218 - L1ME2 LINE L1 -459 5707 5602 594 204 49 21 chr4 30540444 30540586 -153748076 + MER53 DNA DNA 4 149 -40 1232 185 56 79 chr4 30540612 30540968 -153747694 - L1ME2 LINE L1 -553 5613 5266 1940 125 0 28 chr4 30540986 30541273 -153747389 - AluSx SINE Alu -32 280 2 4160 223 108 88 chr4 30541273 30541752 -153746910 - L1ME2 LINE L1 -1427 4719 4251 2112 89 31 14 chr4 30541752 30542043 -153746619 - AluSg SINE Alu -14 296 1 4160 223 108 88 chr4 30542043 30542239 -153746423 - L1ME2 LINE L1 -1895 4251 4060 2185 98 19 26 chr4 30542239 30542419 -153746243 - AluSx SINE Alu -7 305 126 181 0 69 0 chr4 30542419 30542448 -153746214 + (TTTG)n Simple_repeat Simple_repeat 4 34 0 2185 98 19 26 chr4 30542448 30542574 -153746088 - AluSx SINE Alu -186 126 1 4160 223 108 88 chr4 30542574 30542795 -153745867 - L1ME2 LINE L1 -2086 4060 3845 2065 136 7 0 chr4 30542795 30543097 -153745565 - AluSx SINE Alu -8 304 1 4160 223 108 88 chr4 30543097 30543434 -153745228 - L1ME2 LINE L1 -2301 3845 3516 781 199 0 0 chr4 30543434 30543565 -153745097 - FLAM_C SINE Alu -4 139 9 4160 223 108 88 chr4 30543565 30544052 -153744610 - L1ME2 LINE L1 -2630 3516 3040 2553 66 0 0 chr4 30544052 30544357 -153744305 - AluY SINE Alu -6 305 1 4160 223 108 88 chr4 30544357 30544442 -153744220 - L1ME2 LINE L1 -3106 3040 2958 237 33 0 0 chr4 30544442 30544472 -153744190 + (TG)n Simple_repeat Simple_repeat 1 30 0 2205 96 0 0 chr4 30544472 30544752 -153743910 - AluSq SINE Alu -33 280 1 4160 223 108 88 chr4 30544752 30545173 -153743489 - L1ME2 LINE L1 -3187 2959 2310 2351 107 7 0 chr4 30545203 30545511 -153743151 - AluSg SINE Alu 0 310 1 1387 213 14 60 chr4 30545513 30545865 -153742797 - MLT1A2 LTR MaLR -38 336 1 1501 144 45 0 chr4 30545871 30546114 -153742548 + MER2 DNA MER2_type 1 254 -91 1978 158 3 0 chr4 30546119 30546417 -153742245 - AluSx SINE Alu -13 299 1 1889 134 7 0 chr4 30546584 30546887 -153741775 + AluSx SINE Alu 14 312 0 2145 126 0 7 chr4 30547558 30547859 -153740803 - AluSx SINE Alu -13 299 1 1495 175 175 20 chr4 30547963 30548274 -153740388 + MER93a LTR ERV1 1 373 -29 3247 140 8 14 chr4 30548274 30548696 -153739966 - MER75 DNA T2_type -2 512 92 2220 119 0 3 chr4 30548696 30548999 -153739663 + AluSg1 SINE Alu 3 304 -5 3247 140 8 14 chr4 30548999 30549091 -153739571 - MER75 DNA T2_type -422 92 1 1495 175 175 20 chr4 30549091 30549127 -153739535 + MER93a LTR ERV1 373 402 0 2312 121 54 56 chr4 30549375 30549474 -153739188 + MSTC LTR MaLR 1 99 -329 1751 157 4 4 chr4 30549474 30549763 -153738899 + AluSg SINE Alu 14 302 0 2312 121 54 56 chr4 30549763 30550091 -153738571 + MSTC LTR MaLR 99 428 0 2204 109 0 0 chr4 30550241 30550553 -153738109 + AluSx SINE Alu 1 312 0 615 139 15 17 chr4 30550608 30550754 -153737908 - Charlie5 DNA MER1_type -180 2432 2330 289 203 17 0 chr4 30550787 30550846 -153737816 + MLT1H1 LTR MaLR 6 65 -490 1563 163 54 7 chr4 30550854 30551130 -153737532 - AluSx SINE Alu -21 291 3 884 227 0 32 chr4 30551146 30551331 -153737331 + AluJb SINE Alu 123 301 -11 581 200 9 0 chr4 30551344 30551459 -153737203 + Charlie5 DNA MER1_type 1 116 -2496 1875 143 35 7 chr4 30551461 30551747 -153736915 - AluSx SINE Alu -18 294 1 1465 143 15 61 chr4 30551797 30552056 -153736606 + Charlie5 DNA MER1_type 2290 2560 -64 1894 129 54 0 chr4 30552056 30552334 -153736328 - AluSx SINE Alu -19 293 1 5302 140 137 42 chr4 30552335 30553464 -153735198 - MER11B LTR ERVK 0 1236 1 1465 143 15 61 chr4 30553464 30553544 -153735118 + Charlie5 DNA MER1_type 2559 2615 -9 2364 97 6 3 chr4 30553641 30553952 -153734710 + AluSq SINE Alu 2 313 0 625 129 10 10 chr4 30553985 30554086 -153734576 + Tigger2a DNA MER2_type 1 101 -333 1326 191 5 5 chr4 30554088 30554308 -153734354 + AluJo SINE Alu 1 220 -92 309 163 0 0 chr4 30554308 30554357 -153734305 + AluJo SINE Alu 86 134 -168 461 280 29 63 chr4 30554473 30554712 -153733950 - MIR SINE MIR 0 262 32 2020 112 4 0 chr4 30554768 30555037 -153733625 + AluSq SINE Alu 1 270 -43 1677 120 0 8 chr4 30555046 30555280 -153733382 + AluJb SINE Alu 1 232 -80 1309 105 0 0 chr4 30555280 30555451 -153733211 + AluSq SINE Alu 131 301 -12 762 136 16 0 chr4 30555451 30555576 -153733086 + L1MC1 LINE L1 6064 6190 -143 1812 155 10 13 chr4 30556078 30556382 -153732280 + AluJo SINE Alu 1 303 -9 2313 91 7 3 chr4 30556398 30556696 -153731966 + AluSx SINE Alu 1 299 -13 202 338 98 8 chr4 30556759 30556892 -153731770 - L2 LINE L2 0 3313 3169 386 281 41 0 chr4 30556963 30557084 -153731578 + MIR SINE MIR 67 192 -70 370 132 0 85 chr4 30557596 30557701 -153730961 + AluS SINE Alu 3 74 -229 2256 118 0 10 chr4 30558199 30558505 -153730157 - AluSx SINE Alu -9 303 1 492 265 26 58 chr4 30558673 30558781 -153729881 + MIR SINE MIR 78 179 -83 3559 118 8 4 chr4 30558781 30559290 -153729372 - MER9 LTR ERVK 0 511 1 492 265 26 58 chr4 30559290 30559370 -153729292 + MIR SINE MIR 179 260 -2 21 0 0 0 chr4 30559417 30559438 -153729224 + AT_rich Low_complexity Low_complexity 1 21 0 1548 183 14 28 chr4 30559440 30559750 -153728912 + AluJo SINE Alu 2 307 0 697 197 8 15 chr4 30559787 30559919 -153728743 + AluJb SINE Alu 7 137 -175 851 247 50 44 chr4 30559919 30560294 -153728368 - MLT1G3 LTR MaLR -47 548 83 2647 68 31 6 chr4 30560294 30560647 -153728015 + MER4E LTR ERV1 1 362 -404 300 25 0 50 chr4 30560674 30560714 -153727948 - MER4E LTR ERV1 -380 386 349 2060 91 0 0 chr4 30560716 30560968 -153727694 + AluSg SINE Alu 2 253 -57 1427 98 0 0 chr4 30560969 30561143 -153727519 - AluSc SINE Alu -133 176 3 3403 55 2 5 chr4 30561144 30561566 -153727096 + MER4E LTR ERV1 346 766 0 2065 134 3 13 chr4 30561567 30561872 -153726790 - AluSx SINE Alu -6 306 5 393 281 36 7 chr4 30561872 30562004 -153726658 - MLT1F1 LTR MaLR -425 142 4 530 240 39 144 chr4 30562007 30562292 -153726370 - MLT1F1-int LTR MaLR 0 1371 1135 2211 109 0 3 chr4 30562292 30562586 -153726076 - AluSg SINE Alu -17 293 1 530 240 39 144 chr4 30562586 30562683 -153725979 - MLT1F1-int LTR MaLR -236 1135 1029 2080 120 33 0 chr4 30562791 30563092 -153725570 - AluSx SINE Alu -1 311 1 725 251 0 0 chr4 30563131 30563294 -153725368 + FRAM SINE Alu 8 170 -6 2010 150 3 3 chr4 30563353 30563659 -153725003 - AluSx SINE Alu -6 306 1 594 158 0 0 chr4 30563673 30563768 -153724894 + FLAM_C SINE Alu 47 141 -2 356 220 68 49 chr4 30563788 30563928 -153724734 - MLT1B LTR MaLR -211 179 51 2343 78 10 0 chr4 30564228 30564521 -153724141 + AluSc SINE Alu 1 296 -13 21 36 0 0 chr4 30564700 30564728 -153723934 + AT_rich Low_complexity Low_complexity 1 28 0 504 253 38 38 chr4 30564851 30565037 -153723625 - MIR SINE MIR -32 230 45 23 0 0 0 chr4 30565063 30565086 -153723576 + AT_rich Low_complexity Low_complexity 1 23 0 1878 148 36 0 chr4 30565095 30565373 -153723289 + AluJb SINE Alu 1 288 -24 435 273 0 0 chr4 30565534 30565633 -153723029 + L1MD3 LINE L1 7085 7183 -812 * 2227 184 19 9 chr4 30565629 30566059 -153722603 + L1MD3 LINE L1 7553 7986 -9 2105 124 3 0 chr4 30566533 30566823 -153721839 - AluJb SINE Alu -21 291 1 2068 122 16 13 chr4 30567162 30567466 -153721196 - AluJb SINE Alu -5 307 3 2117 133 0 3 chr4 30567686 30567986 -153720676 + AluSx SINE Alu 1 299 -13 1384 242 109 40 chr4 30567993 30568456 -153720206 - LTR33A LTR ERVL 0 523 45 1990 120 37 7 chr4 30568539 30568839 -153719823 + AluSx SINE Alu 1 309 -3 23 33 0 0 chr4 30569487 30569517 -153719145 + AT_rich Low_complexity Low_complexity 1 30 0 871 266 104 74 chr4 30569800 30570562 -153718100 + L1ME4a LINE L1 5314 6081 -40 1843 141 7 14 chr4 30571373 30571670 -153716992 + AluSx SINE Alu 1 295 -17 2475 103 0 0 chr4 30571987 30572298 -153716364 + AluSx SINE Alu 1 311 -1 454 327 46 0 chr4 30573867 30574084 -153714578 + L1ME3 LINE L1 5493 5719 -451 360 163 57 8 chr4 30574089 30574212 -153714450 + GA-rich Low_complexity Low_complexity 3 131 0 329 263 92 106 chr4 30574214 30574319 -153714343 + L1ME3 LINE L1 5738 5843 -319 2318 111 3 0 chr4 30574319 30574625 -153714037 - AluSx SINE Alu -4 308 2 329 263 92 106 chr4 30574625 30574736 -153713926 + L1ME3 LINE L1 5843 5951 -211 306 50 0 0 chr4 30575940 30575980 -153712682 + (CCAA)n Simple_repeat Simple_repeat 4 43 0 1968 104 59 0 chr4 30576110 30576380 -153712282 + AluSx SINE Alu 3 288 -24 1820 252 21 79 chr4 30578282 30579235 -153709427 + L1MEc LINE L1 2048 2921 -3294 2261 219 77 58 chr4 30579369 30579401 -153709261 + HAL1 LINE L1 1597 1627 -880 946 218 69 5 chr4 30579401 30579603 -153709059 - MER58C DNA MER1_type 0 215 1 2261 219 77 58 chr4 30579603 30580386 -153708276 + HAL1 LINE L1 1627 2428 -79 31 26 0 0 chr4 30580427 30580465 -153708197 + AT_rich Low_complexity Low_complexity 1 38 0 254 224 35 0 chr4 30580465 30580523 -153708139 + HAL1 LINE L1 2447 2506 -1 694 285 5 5 chr4 30581339 30581546 -153707116 + MIR SINE MIR 18 224 -38 1223 260 121 19 chr4 30581580 30582234 -153706428 + L2 LINE L2 2371 3092 -221 268 144 53 8 chr4 30582236 30582368 -153706294 + (TA)n Simple_repeat Simple_repeat 1 138 0 1902 137 0 62 chr4 30582368 30582674 -153705988 - AluSx SINE Alu -25 287 1 570 279 66 20 chr4 30582675 30582872 -153705790 + L2 LINE L2 3101 3306 -7 1467 134 0 0 chr4 30582885 30583086 -153705576 + AluSx SINE Alu 1 201 -111 406 275 45 45 chr4 30583160 30583338 -153705324 + MIR SINE MIR 71 248 -14 272 351 11 0 chr4 30585091 30585185 -153703477 + (TG)n Simple_repeat Simple_repeat 1 95 0 251 315 45 0 chr4 30586866 30586955 -153701707 - MIR SINE MIR -156 106 14 239 293 49 41 chr4 30587301 30587424 -153701238 - MIR3 SINE MIR -7 201 78 221 271 0 0 chr4 30587576 30587624 -153701038 + L2 LINE L2 3266 3313 0 199 266 70 47 chr4 30588151 30588279 -153700383 + L2 LINE L2 3137 3267 -5 657 215 20 62 chr4 30588624 30588819 -153699843 + MIR SINE MIR 22 208 -54 2307 96 3 0 chr4 30588856 30589149 -153699513 - AluSx SINE Alu -18 294 1 468 0 0 0 chr4 30590098 30590150 -153698512 + (TG)n Simple_repeat Simple_repeat 2 53 0 236 270 0 16 chr4 30590679 30590742 -153697920 + CT-rich Low_complexity Low_complexity 1 62 0 1842 149 20 17 chr4 30590832 30591133 -153697529 + AluJo SINE Alu 1 302 -10 662 283 157 25 chr4 30591666 30591952 -153696710 + MLT1I LTR MaLR 84 407 -2 1109 113 0 4 chr4 30592107 30592367 -153696295 + (GGAA)n Simple_repeat Simple_repeat 1 258 0 1069 306 51 42 chr4 30592452 30593004 -153695658 + MARNA DNA Mariner 10 566 -20 1801 126 8 0 chr4 30593192 30593455 -153695207 + AluSx SINE Alu 33 297 -15 239 247 65 0 chr4 30593744 30593821 -153694841 - MIR SINE MIR -72 190 109 291 329 71 0 chr4 30594231 30594371 -153694291 - MIR SINE MIR -95 167 18 226 151 57 0 chr4 30594373 30594426 -153694236 + T-rich Low_complexity Low_complexity 4 59 0 640 305 44 0 chr4 30594533 30594736 -153693926 - MIR SINE MIR -31 231 20 1663 109 0 13 chr4 30594820 30595049 -153693613 - AluJb SINE Alu -22 290 65 276 357 49 0 chr4 30595134 30595277 -153693385 + MIR SINE MIR 18 167 -95 334 213 27 13 chr4 30595319 30595394 -153693268 + MIR SINE MIR 36 111 -151 6412 72 17 43 chr4 30595429 30596738 -153691924 + L1PA10 LINE L1 4868 6154 -14 213 200 0 0 chr4 30596771 30596816 -153691846 + L2 LINE L2 3210 3254 -18 355 265 88 29 chr4 30597042 30597212 -153691450 - MIR SINE MIR -54 208 29 825 137 0 15 chr4 30597844 30597975 -153690687 + FLAM_C SINE Alu 5 133 0 24 0 0 0 chr4 30597993 30598017 -153690645 + AT_rich Low_complexity Low_complexity 1 24 0 1620 110 57 4 chr4 30598052 30598280 -153690382 + AluSq SINE Alu 15 254 -59 211 0 57 29 chr4 30598298 30598333 -153690329 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 180 191 0 44 chr4 30598482 30598550 -153690112 + GA-rich Low_complexity Low_complexity 3 67 0 350 247 27 0 chr4 30598573 30598719 -153689943 + GA-rich Low_complexity Low_complexity 1 150 0 335 262 113 51 chr4 30599263 30599599 -153689063 - L2 LINE L2 -10 3262 2906 277 271 31 0 chr4 30599913 30600009 -153688653 + MER5B DNA MER1_type 61 159 -19 2395 104 0 3 chr4 30600072 30600381 -153688281 + AluSx SINE Alu 1 308 -4 992 192 61 0 chr4 30600404 30600602 -153688060 - MLT1B LTR MaLR -8 382 173 9947 43 3 4 chr4 30600808 30602029 -153686633 + L1P LINE L1 3350 4569 -1577 2011 120 18 4 chr4 30602370 30602692 -153685970 - AluSc SINE Alu 0 326 1 2512 167 25 4 chr4 30603383 30603868 -153684794 - L1P LINE L1 -1596 4550 4056 2232 110 53 11 chr4 30603868 30604209 -153684453 + L1PA13 LINE L1 5790 6159 -4 1566 172 8 0 chr4 30604255 30604517 -153684145 - AluSx SINE Alu -14 298 35 2311 92 0 13 chr4 30604801 30605134 -153683528 - AluSc SINE Alu 0 309 1 649 244 91 14 chr4 30606263 30606472 -153682190 + MIR SINE MIR 14 238 -24 21 0 0 0 chr4 30607499 30607520 -153681142 + AT_rich Low_complexity Low_complexity 1 21 0 27 81 0 0 chr4 30608830 30608892 -153679770 + GC_rich Low_complexity Low_complexity 1 62 0 1706 147 7 11 chr4 30609139 30609424 -153679238 - AluSx SINE Alu -28 284 1 802 162 0 22 chr4 30609427 30609563 -153679099 - AluJo/FLAM SINE Alu -169 133 1 256 286 0 0 chr4 30609597 30609653 -153679009 + polypyrimidine Low_complexity Low_complexity 2 57 0 183 129 0 0 chr4 30611716 30611747 -153676915 + (T)n Simple_repeat Simple_repeat 1 31 0 1970 130 27 0 chr4 30612418 30612711 -153675951 + AluSq SINE Alu 1 301 -12 2200 103 3 0 chr4 30612716 30613016 -153675646 + AluSx SINE Alu 6 306 -6 3490 168 19 26 chr4 30613016 30613708 -153674954 + L1MB2 LINE L1 5483 6169 -2 191 244 0 0 chr4 30614275 30614316 -153674346 + L2 LINE L2 3226 3266 -6 508 240 45 26 chr4 30615049 30615203 -153673459 + MIR SINE MIR 29 185 -77 198 71 0 0 chr4 30616130 30616158 -153672504 + (T)n Simple_repeat Simple_repeat 1 28 0 2150 100 0 17 chr4 30616977 30617278 -153671384 - AluSx SINE Alu -16 296 1 251 372 0 0 chr4 30617285 30617363 -153671299 - L2 LINE L2 -1 3312 3235 2044 103 3 3 chr4 30618174 30618465 -153670197 + AluSx SINE Alu 1 291 -21 530 191 9 27 chr4 30618490 30618600 -153670062 + MER58A DNA MER1_type 10 117 0 254 185 0 108 chr4 30618609 30618674 -153669988 + MER58A DNA MER1_type 165 222 -2 1292 166 39 75 chr4 30618685 30618780 -153669882 - MER33 DNA MER1_type -2262 323 226 2352 88 0 0 chr4 30618780 30619087 -153669575 + AluSx SINE Alu 1 307 -5 1292 166 39 75 chr4 30619087 30619322 -153669340 - MER33 DNA MER1_type -2359 226 5 809 234 0 18 chr4 30619485 30619656 -153669006 - FRAM SINE Alu -8 168 1 353 306 81 6 chr4 30620457 30620617 -153668045 + MIR3 SINE MIR 31 202 -6 2287 81 3 0 chr4 30620843 30621141 -153667521 - AluSc SINE Alu -10 299 1 712 155 23 52 chr4 30621409 30621583 -153667079 + L1MB8 LINE L1 6001 6169 -9 2354 93 0 0 chr4 30621599 30621909 -153666753 + AluSx SINE Alu 1 310 -2 1440 284 55 6 chr4 30621963 30622453 -153666209 - L1MC4a LINE L1 -1953 5855 5342 445 337 26 5 chr4 30622635 30622825 -153665837 + L2 LINE L2 2877 3070 -202 2936 168 25 7 chr4 30623033 30623587 -153665075 - L1MB3 LINE L1 0 6183 5620 1765 118 8 0 chr4 30623601 30623855 -153664807 - AluSx SINE Alu -21 291 36 894 200 6 6 chr4 30623957 30624117 -153664545 - MLT1B LTR MaLR -226 164 5 2088 111 0 0 chr4 30625690 30625979 -153662683 + AluSx SINE Alu 2 290 -22 1905 110 0 0 chr4 30627159 30627423 -153661239 - AluY SINE Alu -21 290 27 21 0 0 0 chr4 30627432 30627453 -153661209 + AT_rich Low_complexity Low_complexity 1 21 0 613 239 0 0 chr4 30627706 30627844 -153660818 - MIR3 SINE MIR -15 193 56 2071 201 45 69 chr4 30628073 30628606 -153660056 + MLT2B1 LTR ERVL 1 520 0 722 272 30 25 chr4 30629806 30630008 -153658654 - MIR SINE MIR 0 262 60 260 254 68 0 chr4 30630287 30630346 -153658316 - L2 LINE L2 -1 3271 3209 2398 55 3 0 chr4 30630596 30630904 -153657758 - AluY SINE Alu -1 310 2 353 257 29 14 chr4 30631714 30631854 -153656808 - L1MC/D LINE L1 -1984 5824 5683 23 0 0 0 chr4 30632549 30632572 -153656090 + AT_rich Low_complexity Low_complexity 1 23 0 1015 59 0 15 chr4 30633356 30633492 -153655170 + AluY SINE Alu 1 134 -177 2058 75 0 14 chr4 30633492 30633774 -153654888 + AluY SINE Alu 1 278 -33 2184 161 79 25 chr4 30634146 30634587 -153654075 + MLT1C LTR MaLR 1 465 -2 212 270 110 68 chr4 30634624 30634787 -153653875 + L2 LINE L2 2822 2991 -322 3645 172 62 47 chr4 30635119 30635970 -153652692 + L1MB2 LINE L1 5260 6121 -50 2193 93 0 3 chr4 30635970 30636261 -153652401 + AluSq SINE Alu 7 296 -17 3645 172 62 47 chr4 30636261 30636306 -153652356 + L1MB2 LINE L1 6121 6164 -7 740 163 64 7 chr4 30636671 30636812 -153651850 + MLT1C LTR MaLR 1 149 -318 319 296 23 0 chr4 30637321 30637409 -153651253 + CT-rich Low_complexity Low_complexity 6 95 0 1019 179 29 57 chr4 30637448 30637759 -153650903 + MLT1A1 LTR MaLR 6 365 0 698 252 47 95 chr4 30637831 30638193 -153650469 - L1MC5 LINE L1 -30 7931 7610 1969 125 17 0 chr4 30638193 30638490 -153650172 + AluSx SINE Alu 1 302 -10 698 252 47 95 chr4 30638490 30638761 -153649901 - L1MC5 LINE L1 -351 7610 7328 325 326 68 0 chr4 30638768 30638915 -153649747 - L1MC4 LINE L1 -565 7477 7321 * 438 271 53 0 chr4 30638909 30639042 -153649620 - L1MC4a LINE L1 -632 7176 7037 537 323 67 30 chr4 30639054 30639354 -153649308 + MARNA DNA Mariner 268 578 -8 317 170 0 0 chr4 30639354 30639401 -153649261 - L1MC4 LINE L1 -1338 6704 6658 203 245 0 0 chr4 30639948 30640001 -153648661 - MIR3 SINE MIR -5 203 151 486 245 138 19 chr4 30640018 30640177 -153648485 - MIR3 SINE MIR -25 183 6 438 294 20 33 chr4 30640541 30640694 -153647968 + MIR3 SINE MIR 19 169 -39 432 245 122 27 chr4 30641187 30641454 -153647208 - LTR16C LTR ERVL -3 488 145 696 275 96 95 chr4 30641635 30642291 -153646371 - L2 LINE L2 0 3313 2657 1442 235 138 11 chr4 30642292 30642738 -153645924 - MLT1E3 LTR MaLR 0 608 122 482 277 69 35 chr4 30642818 30643078 -153645584 - L2 LINE L2 -646 2668 2400 411 323 32 8 chr4 30643228 30643352 -153645310 - MIR SINE MIR -116 146 20 2127 97 0 0 chr4 30643369 30643657 -153645005 - AluSx SINE Alu 0 312 25 1564 146 76 7 chr4 30643951 30644226 -153644436 - AluJo SINE Alu -18 294 1 2111 121 88 36 chr4 30644406 30644769 -153643893 - MLT1B LTR MaLR -8 382 1 1474 74 26 0 chr4 30645316 30645506 -153643156 - AluSx SINE Alu -117 195 1 604 256 150 24 chr4 30645664 30646128 -153642534 + MLT1H1 LTR MaLR 1 555 0 732 257 104 27 chr4 30646581 30646949 -153641713 + L2 LINE L2 2731 3146 -167 1587 150 18 18 chr4 30646957 30647237 -153641425 + AluJo SINE Alu 1 280 -32 249 109 0 0 chr4 30647237 30647283 -153641379 + (TCTA)n Simple_repeat Simple_repeat 3 48 0 1214 149 5 0 chr4 30647283 30647478 -153641184 + AluYa5 SINE Alu 108 303 -8 306 250 207 43 chr4 30647497 30647613 -153641049 + L2 LINE L2 3179 3313 0 2510 99 48 14 chr4 30648179 30648531 -153640131 - THE1B LTR MaLR 0 364 1 319 329 35 7 chr4 30649475 30649618 -153639044 - LTR67 LTR ERVL 0 557 411 552 226 149 6 chr4 30649822 30649990 -153638672 + MIR SINE MIR 1 192 -70 415 259 37 37 chr4 30650184 30650319 -153638343 + L2 LINE L2 3179 3313 0 261 270 0 27 chr4 30650331 30650405 -153638257 + L2 LINE L2 3238 3309 -4 202 212 91 15 chr4 30650890 30650956 -153637706 + MIR SINE MIR 80 150 -112 697 250 114 116 chr4 30651027 30651604 -153637058 - MLT1K LTR MaLR -11 577 2 2204 92 0 7 chr4 30651616 30651919 -153636743 - AluSg SINE Alu 0 310 10 236 373 59 26 chr4 30652132 30652285 -153636377 + L2 LINE L2 3115 3272 0 252 220 0 0 chr4 30652734 30652784 -153635878 + GA-rich Low_complexity Low_complexity 4 53 0 257 339 9 18 chr4 30653281 30653393 -153635269 + C-rich Low_complexity Low_complexity 3 113 0 393 221 80 18 chr4 30653706 30653819 -153634843 + MIR SINE MIR 20 139 -123 557 270 98 28 chr4 30653932 30654147 -153634515 - MIR SINE MIR -4 258 29 1055 145 17 90 chr4 30654972 30655206 -153633456 + MER20 DNA MER1_type 3 219 0 2023 102 41 3 chr4 30655418 30655711 -153632951 - AluSq SINE Alu -9 304 1 1691 142 8 0 chr4 30655764 30656032 -153632630 - AluSx SINE Alu -19 293 24 779 301 1 23 chr4 30656135 30656357 -153632305 - MIR SINE MIR -10 252 35 330 273 40 53 chr4 30656428 30656578 -153632084 + MIR SINE MIR 73 220 -42 186 286 0 0 chr4 30656953 30657009 -153631653 + L2 LINE L2 2641 2696 -618 271 301 35 55 chr4 30657009 30657133 -153631529 - L1MDa LINE L1 -3302 3238 3118 2560 42 0 0 chr4 30657133 30657441 -153631221 - AluY SINE Alu -3 308 1 271 301 35 55 chr4 30657441 30657515 -153631147 - L1MDa LINE L1 -3422 3118 3044 569 294 98 51 chr4 30657545 30657710 -153630952 - L1MDa LINE L1 -3640 2900 2744 2017 96 0 33 chr4 30657710 30658013 -153630649 - AluSq SINE Alu -20 293 1 569 294 98 51 chr4 30658013 30658089 -153630573 - L1MDa LINE L1 -3796 2744 2673 2977 6 0 0 chr4 30658089 30658403 -153630259 - AluYb8 SINE Alu -4 314 1 569 294 98 51 chr4 30658403 30658533 -153630129 - L1MDa LINE L1 -3867 2673 2551 1981 124 13 35 chr4 30658533 30658847 -153629815 - AluSx SINE Alu -5 307 1 569 294 98 51 chr4 30658847 30658967 -153629695 - L1MDa LINE L1 -3989 2551 2386 552 196 49 0 chr4 30659414 30659516 -153629146 + Tigger3(Golem) DNA MER2_type 2 108 -2921 * 4520 121 37 12 chr4 30659507 30660241 -153628421 + Tigger3(Golem) DNA MER2_type 2278 3029 0 501 318 107 58 chr4 30660251 30660455 -153628207 - L2 LINE L2 -583 2731 2538 809 130 8 23 chr4 30660455 30660586 -153628076 + FLAM_C SINE Alu 5 133 0 501 318 107 58 chr4 30660586 30661682 -153626980 - L2 LINE L2 -776 2538 1367 221 308 39 0 chr4 30662669 30662747 -153625915 - MIR SINE MIR -103 105 25 961 112 0 0 chr4 30663564 30663698 -153624964 + AluSg/x SINE Alu 176 309 -3 966 200 5 152 chr4 30663699 30664028 -153624634 - L1MC4 LINE L1 -19 8023 7754 1578 136 106 12 chr4 30664028 30664358 -153624304 + MER46B DNA MER2_type 1 236 0 966 200 5 152 chr4 30664358 30664403 -153624259 - L1MC4 LINE L1 -288 7754 7704 188 0 74 0 chr4 30664419 30664446 -153624216 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2253 101 3 0 chr4 30664448 30664735 -153623927 - AluSq SINE Alu -24 289 2 1848 115 7 7 chr4 30668199 30668468 -153620194 + AluSx SINE Alu 23 291 -21 2157 102 78 3 chr4 30669466 30669799 -153618863 - MER46B DNA MER2_type -3 233 1 271 152 15 30 chr4 30669802 30669868 -153618794 + CT-rich Low_complexity Low_complexity 3 67 0 746 292 12 19 chr4 30670294 30670551 -153618111 + MIR SINE MIR 8 262 0 631 276 174 39 chr4 30670605 30671037 -153617625 - LTR33 LTR ERVL -29 492 3 401 285 124 30 chr4 30671201 30671468 -153617194 + MLT1I LTR MaLR 118 409 0 205 212 158 103 chr4 30672528 30672581 -153616081 - MER5B DNA MER1_type -4 174 125 2073 137 0 3 chr4 30672581 30672888 -153615774 + AluSx SINE Alu 1 306 -6 205 212 158 103 chr4 30672888 30672999 -153615663 - MER5B DNA MER1_type -53 125 1 909 150 15 75 chr4 30673008 30673067 -153615595 + MER5A DNA MER1_type 2 63 -126 1642 191 45 17 chr4 30673067 30673422 -153615240 + MLT1A1 LTR MaLR 1 365 0 909 150 15 75 chr4 30673422 30673562 -153615100 + MER5A DNA MER1_type 63 189 0 377 249 93 80 chr4 30673623 30673848 -153614814 - MIR SINE MIR -7 255 28 1654 192 32 118 chr4 30674441 30675008 -153613654 - MLT2B1 LTR ERVL -2 518 1 1035 190 4 58 chr4 30675039 30675265 -153613397 - MER20 DNA MER1_type -5 214 1 317 263 109 115 chr4 30675584 30675915 -153612747 + MLT1K LTR MaLR 205 533 -55 4271 178 44 32 chr4 30675935 30676630 -153612032 + MER21B LTR ERV1 6 714 -149 183 80 0 0 chr4 30676630 30676655 -153612007 + (AATTG)n Simple_repeat Simple_repeat 2 26 0 4271 178 44 32 chr4 30676655 30676796 -153611866 + MER21B LTR ERV1 714 852 -11 558 218 69 63 chr4 30676872 30677000 -153611662 + MER96 DNA MER1_type? 1 133 -42 4212 13 0 0 chr4 30677000 30677487 -153611175 + L1PA3 LINE L1 5682 6168 0 558 218 69 63 chr4 30677487 30677531 -153611131 + MER96 DNA MER1_type? 133 175 0 441 0 0 0 chr4 30677859 30677908 -153610754 + (TG)n Simple_repeat Simple_repeat 2 50 0 281 314 66 54 chr4 30678037 30678279 -153610383 - L2 LINE L2 -95 3177 2933 677 214 144 0 chr4 30678801 30678974 -153609688 + MIR SINE MIR 18 215 -47 332 212 0 0 chr4 30679643 30679709 -153608953 + MER5A DNA MER1_type 9 74 -115 2201 116 0 16 chr4 30679710 30680028 -153608634 + AluSq SINE Alu 1 313 0 747 185 8 0 chr4 30680046 30680166 -153608496 + AluSq/x SINE Alu 2 125 -187 246 32 0 0 chr4 30680166 30680197 -153608465 + (CATA)n Simple_repeat Simple_repeat 2 32 0 180 339 0 0 chr4 30680219 30680281 -153608381 + MER5A DNA MER1_type 128 189 0 2144 113 0 36 chr4 30680529 30680668 -153607994 + AluSg SINE Alu 1 143 -167 2438 74 0 0 chr4 30680668 30680965 -153607697 + AluY SINE Alu 1 297 -14 2144 113 0 36 chr4 30680965 30681134 -153607528 + AluSg SINE Alu 143 298 -12 240 227 80 0 chr4 30681180 30681255 -153607407 + L1MC4 LINE L1 6612 6692 -1350 6550 128 66 26 chr4 30681329 30681917 -153606745 - Tigger3b DNA MER2_type -1802 1226 663 1801 156 28 10 chr4 30681917 30682205 -153606457 - AluJo SINE Alu -19 293 1 6550 128 66 26 chr4 30682205 30682569 -153606093 - Tigger3b DNA MER2_type -2365 663 216 1835 141 105 3 chr4 30682569 30682875 -153605787 - MER1B DNA MER1_type 0 337 1 6550 128 66 26 chr4 30682875 30683100 -153605562 - Tigger3b DNA MER2_type -2812 216 1 397 230 152 36 chr4 30683178 30683343 -153605319 - HAL1 LINE L1 -186 2321 2138 283 288 0 0 chr4 30683340 30683420 -153605242 - HAL1 LINE L1 -1154 1353 1274 * 2243 139 10 21 chr4 30683956 30684321 -153604341 + MLT1A1 LTR MaLR 2 355 -9 2333 104 0 0 chr4 30684671 30684969 -153603693 + AluSc SINE Alu 1 298 -11 1140 146 19 29 chr4 30685821 30686026 -153602636 + MER20 DNA MER1_type 15 217 -2 221 342 93 43 chr4 30686796 30687194 -153601468 + L2 LINE L2 2844 3261 -11 240 143 0 0 chr4 30687215 30687257 -153601405 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 1491 264 36 36 chr4 30688622 30689121 -153599541 + L1ME3A LINE L1 5504 6002 -168 229 270 0 0 chr4 30689146 30689220 -153599442 + L1ME3A LINE L1 6086 6159 -11 1159 205 21 4 chr4 30689764 30689998 -153598664 + MER115 DNA AcHobo 445 682 -11 351 369 96 29 chr4 30690060 30690477 -153598185 - L3 LINE CR1 -789 788 344 219 214 0 0 chr4 30690488 30690530 -153598132 + CT-rich Low_complexity Low_complexity 2 43 0 980 208 35 44 chr4 30690692 30690918 -153597744 - MER58A DNA MER1_type 0 224 1 1797 169 13 29 chr4 30692534 30692847 -153595815 + AluJo SINE Alu 1 308 -4 259 325 8 16 chr4 30694060 30694186 -153594476 + MIR SINE MIR 16 140 -122 2428 103 0 0 chr4 30694195 30694544 -153594118 + AluSx SINE Alu 1 349 0 1299 169 1 109 chr4 30694546 30694709 -153593953 - MER58 DNA MER1_type -3 2417 2238 1755 156 69 9 chr4 30694709 30695055 -153593607 + L1MA9 LINE L1 5946 6312 0 1299 169 1 109 chr4 30695055 30695098 -153593564 - MER58 DNA MER1_type -182 2238 2192 758 161 0 0 chr4 30695098 30695216 -153593446 - FLAM_C SINE Alu -15 118 1 1299 169 1 109 chr4 30695216 30695433 -153593229 - MER58 DNA MER1_type -228 2192 3 594 262 36 0 chr4 30696020 30696188 -153592474 + MIR SINE MIR 47 220 -42 697 225 106 14 chr4 30696219 30696261 -153592401 - MIR SINE MIR -11 251 214 1691 165 0 81 chr4 30696261 30696583 -153592079 - AluJo SINE Alu -16 296 1 697 225 106 14 chr4 30696583 30696758 -153591904 - MIR SINE MIR -48 214 14 871 216 188 50 chr4 30697904 30698266 -153590396 + LTR16A1 LTR ERVL 43 454 -3 1334 254 43 47 chr4 30700344 30700832 -153587830 + MLT1H LTR MaLR 57 542 -7 2006 117 7 3 chr4 30701238 30701557 -153587105 + AluSq SINE Alu 1 320 0 1485 174 58 16 chr4 30701557 30701878 -153586784 - MLT2D LTR ERVL -7 390 16 1652 146 52 4 chr4 30701878 30702146 -153586516 - AluJo SINE Alu -10 302 22 1856 195 39 47 chr4 30702196 30702663 -153585999 + MLT1C LTR MaLR 3 465 -2 191 250 36 18 chr4 30703059 30703115 -153585547 + MIR SINE MIR 26 82 -180 319 259 99 61 chr4 30703187 30703318 -153585344 - MIR SINE MIR -118 144 9 2223 120 10 0 chr4 30703424 30703724 -153584938 + AluSx SINE Alu 1 303 -9 2274 166 63 14 chr4 30704652 30705097 -153583565 - MLT1C LTR MaLR 0 467 1 315 286 92 34 chr4 30705120 30705239 -153583423 + L2 LINE L2 3145 3270 -2 340 322 115 0 chr4 30705298 30705472 -153583190 + MIR SINE MIR 57 250 -12 2285 114 0 0 chr4 30705476 30705774 -153582888 - AluSx SINE Alu -14 298 1 1865 153 58 22 chr4 30705795 30706155 -153582507 + THE1C LTR MaLR 1 373 -2 423 309 89 44 chr4 30706282 30706667 -153581995 - MLT1K LTR MaLR -2 586 151 331 223 246 0 chr4 30707661 30707791 -153580871 - MIR SINE MIR -69 193 32 219 244 56 11 chr4 30707839 30707929 -153580733 - MIR SINE MIR -73 189 96 577 309 116 16 chr4 30708895 30709166 -153579496 - L2 LINE L2 -1 3312 3069 1902 142 192 0 chr4 30709166 30709525 -153579137 - MSTC LTR MaLR 0 428 1 577 309 116 16 chr4 30709525 30709720 -153578942 - L2 LINE L2 -244 3069 2760 351 0 0 0 chr4 30709748 30709787 -153578875 + (TG)n Simple_repeat Simple_repeat 1 39 0 1341 179 0 91 chr4 30709787 30710094 -153578568 - AluJo SINE Alu -33 279 1 2001 150 32 12 chr4 30710312 30710653 -153578009 - MER7A DNA MER2_type 0 346 1 3382 134 12 39 chr4 30710677 30711246 -153577416 - MLT2B3 LTR ERVL 0 554 1 27 29 0 0 chr4 30711615 30711649 -153577013 + AT_rich Low_complexity Low_complexity 1 34 0 1111 220 20 16 chr4 30712341 30712586 -153576076 + MLT1A2 LTR MaLR 1 246 -128 232 132 26 0 chr4 30712586 30712624 -153576038 - Tigger3(Golem) DNA MER2_type -190 2839 2801 * 614 199 13 45 chr4 30712603 30712789 -153575873 + MLT1A2 LTR MaLR 189 372 -2 411 248 124 9 chr4 30712828 30712941 -153575721 + MIR SINE MIR 19 144 -118 2344 71 31 0 chr4 30713087 30713381 -153575281 + AluSg SINE Alu 1 303 -7 292 288 0 12 chr4 30713512 30713592 -153575070 + MLT1H1 LTR MaLR 1 79 -476 971 183 31 54 chr4 30715130 30715354 -153573308 + MER20 DNA MER1_type 1 219 0 500 136 58 7 chr4 30715428 30715582 -153573080 + (TA)n Simple_repeat Simple_repeat 1 162 0 739 217 90 0 chr4 30715584 30715750 -153572912 - MIR SINE MIR -58 204 24 305 274 10 10 chr4 30716184 30716286 -153572376 + L2 LINE L2 2952 3053 -219 233 323 20 0 chr4 30716693 30716792 -153571870 - L3 LINE CR1 -325 1252 1152 357 245 139 118 chr4 30716914 30717245 -153571417 - MER102b DNA MER1_type 0 341 4 444 271 20 45 chr4 30719883 30720082 -153568580 - MER112 DNA MER1_type -1 259 66 1386 112 208 19 chr4 30720120 30720380 -153568282 - AluSg1 SINE Alu 0 309 1 298 250 0 0 chr4 30720447 30720511 -153568151 + L2 LINE L2 3248 3311 -2 21 0 0 0 chr4 30720993 30721014 -153567648 + AT_rich Low_complexity Low_complexity 1 21 0 482 250 62 50 chr4 30721604 30721828 -153566834 + MIR SINE MIR 16 246 -16 427 269 157 27 chr4 30722155 30722378 -153566284 + L1MC4a LINE L1 5683 5934 -1874 2213 123 3 3 chr4 30722587 30722895 -153565767 + AluSx SINE Alu 2 309 -3 485 272 8 16 chr4 30723752 30723877 -153564785 + MIR SINE MIR 117 240 -22 518 125 0 0 chr4 30724001 30724073 -153564589 + AluJ/FLAM SINE Alu 2 73 -239 535 299 62 38 chr4 30724978 30725020 -153563642 + L2 LINE L2 3016 3056 -257 2578 66 3 0 chr4 30725020 30725325 -153563337 - AluSc SINE Alu -3 306 1 535 299 62 38 chr4 30725325 30725573 -153563089 + L2 LINE L2 3056 3313 0 1812 122 91 0 chr4 30726031 30726317 -153562345 - AluSx SINE Alu 0 312 1 568 152 0 9 chr4 30726422 30726534 -153562128 - MER96B DNA MER1_type? -233 184 74 1880 201 92 25 chr4 30726535 30726968 -153561694 + MLT1C LTR MaLR 6 467 0 276 129 226 0 chr4 30726972 30727034 -153561628 - MER96B DNA MER1_type? -341 76 1 25 31 0 0 chr4 30727646 30727678 -153560984 + AT_rich Low_complexity Low_complexity 1 32 0 238 229 0 0 chr4 30727680 30727728 -153560934 - MER5A DNA MER1_type -80 109 62 1820 150 17 10 chr4 30727728 30728028 -153560634 - AluSx SINE Alu 0 312 11 2023 140 3 0 chr4 30728333 30728626 -153560036 - AluSx SINE Alu -18 294 1 489 211 0 0 chr4 30728652 30728742 -153559920 - Tigger5 DNA MER2_type 0 2323 2234 236 273 0 18 chr4 30728749 30728804 -153559858 - Tigger5 DNA MER2_type -2268 55 2 198 0 0 0 chr4 30730895 30730917 -153557745 + (TAA)n Simple_repeat Simple_repeat 1 22 0 2086 91 29 0 chr4 30730928 30731204 -153557458 - AluSx SINE Alu -28 284 1 543 291 174 0 chr4 30734829 30735042 -153553620 - MIR SINE MIR 0 262 13 259 294 198 8 chr4 30735091 30735217 -153553445 - MIR SINE MIR 0 262 113 520 224 200 5 chr4 30735224 30735429 -153553233 - MIR SINE MIR 0 262 18 2220 102 0 17 chr4 30735750 30736045 -153552617 + AluSx SINE Alu 1 290 -22 254 182 55 18 chr4 30737228 30737283 -153551379 + MER117 DNA MER1_type 115 171 -26 186 283 0 0 chr4 30737310 30737356 -153551306 - MIR SINE MIR -68 140 95 * 423 282 69 0 chr4 30737341 30737472 -153551190 + L2 LINE L2 3174 3313 0 196 396 97 21 chr4 30738383 30738714 -153549948 + L3b LINE CR1 1113 1468 -115 469 313 125 7 chr4 30738715 30738996 -153549666 + L1MD3 LINE L1 5624 5937 -1871 307 290 0 61 chr4 30739469 30739600 -153549062 + MIR SINE MIR 98 220 -42 575 268 10 31 chr4 30740098 30740292 -153548370 - MER117 DNA MER1_type -6 191 2 2168 144 0 3 chr4 30740407 30740720 -153547942 - AluSx SINE Alu 0 312 1 213 191 0 21 chr4 30740747 30740794 -153547868 + L2 LINE L2 3001 3046 -267 459 280 76 42 chr4 30740889 30741059 -153547603 + MIR SINE MIR 3 185 -77 2057 109 3 20 chr4 30741059 30741353 -153547309 + AluSx SINE Alu 1 289 -23 459 280 76 42 chr4 30741353 30741418 -153547244 + MIR SINE MIR 185 246 -16 247 279 0 15 chr4 30741482 30741550 -153547112 + L2 LINE L2 3206 3272 0 667 308 100 25 chr4 30742153 30742896 -153545766 - L2 LINE L2 -77 3236 2430 656 241 93 12 chr4 30744404 30744619 -153544043 + L1MD3 LINE L1 6116 7978 -17 1767 158 0 4 chr4 30744628 30744893 -153543769 + AluJo SINE Alu 32 295 -17 454 262 37 48 chr4 30745290 30745477 -153543185 - MER5A DNA MER1_type -4 185 1 512 179 119 8 chr4 30745778 30745912 -153542750 - MIR SINE MIR -70 192 44 2441 89 0 13 chr4 30746013 30746327 -153542335 + AluSx SINE Alu 3 312 0 225 284 34 0 chr4 30746445 30746533 -153542129 + CT-rich Low_complexity Low_complexity 3 93 0 575 138 0 146 chr4 30748041 30748171 -153540491 + L1M3 LINE L1 5444 5554 -629 2224 178 95 6 chr4 30749144 30749616 -153539046 - Charlie1b DNA MER1_type 0 523 10 1706 187 6 19 chr4 30749986 30750301 -153538361 - AluJb SINE Alu -1 311 1 1619 226 118 48 chr4 30750586 30750934 -153537728 + L1ME3A LINE L1 5585 5986 -184 2281 103 3 3 chr4 30750934 30751235 -153537427 - AluSg SINE Alu -8 302 2 1619 226 118 48 chr4 30751235 30751426 -153537236 + L1ME3A LINE L1 5986 6162 -8 1728 186 3 22 chr4 30751460 30751778 -153536884 + AluJb SINE Alu 1 312 0 190 346 25 0 chr4 30752116 30752197 -153536465 + L2 LINE L2 3176 3258 -14 530 227 132 28 chr4 30752425 30752676 -153535986 + MER5C DNA MER1_type 47 323 -1 329 186 93 23 chr4 30753344 30753430 -153535232 - MLT1K LTR MaLR -12 576 485 255 191 111 0 chr4 30753567 30753630 -153535032 + L1ME LINE L1 5677 5746 -375 26 64 0 0 chr4 30753703 30753750 -153534912 + AT_rich Low_complexity Low_complexity 1 47 0 2116 121 7 13 chr4 30753932 30754239 -153534423 + AluSq SINE Alu 1 305 -8 519 17 0 0 chr4 30754239 30754299 -153534363 + (GGAA)n Simple_repeat Simple_repeat 1 60 0 934 275 146 38 chr4 30754489 30754940 -153533722 + MLT1K LTR MaLR 82 581 -7 2241 155 31 10 chr4 30754943 30755331 -153533331 - MSTD LTR MaLR 0 396 1 195 69 0 0 chr4 30755844 30755873 -153532789 + (T)n Simple_repeat Simple_repeat 1 29 0 476 317 0 28 chr4 30756448 30756649 -153532013 + C-rich Low_complexity Low_complexity 1 195 0 770 211 61 33 chr4 30757680 30757860 -153530802 - MER5A DNA MER1_type -4 185 1 2354 98 0 7 chr4 30759145 30759452 -153529210 - AluSg SINE Alu -5 305 1 2118 146 3 0 chr4 30759643 30759944 -153528718 + AluJb SINE Alu 5 306 -6 294 271 68 120 chr4 30760218 30760484 -153528178 + L2 LINE L2 3021 3272 0 277 271 14 0 chr4 30760491 30760561 -153528101 + CT-rich Low_complexity Low_complexity 3 73 0 2226 105 10 7 chr4 30761788 30762093 -153526569 + AluSg SINE Alu 3 308 -2 532 308 81 32 chr4 30762598 30762783 -153525879 - MIR SINE MIR -66 196 3 289 311 89 50 chr4 30762880 30763060 -153525602 + MIR SINE MIR 14 200 -62 607 263 84 53 chr4 30763315 30763638 -153525024 + MLT1F LTR MaLR 210 542 0 382 346 27 21 chr4 30763807 30763995 -153524667 - L3b LINE CR1 -86 1497 1309 1257 201 54 125 chr4 30764832 30764961 -153523701 + MLT1C LTR MaLR 1 138 -329 2108 131 7 13 chr4 30764961 30765266 -153523396 + AluSx SINE Alu 1 303 -9 1257 201 54 125 chr4 30765266 30765326 -153523336 + MLT1C LTR MaLR 138 201 -266 2203 127 10 0 chr4 30765326 30765634 -153523028 + AluSx SINE Alu 1 311 -1 1257 201 54 125 chr4 30765634 30765946 -153522716 + MLT1C LTR MaLR 201 467 0 228 340 31 0 chr4 30766196 30766293 -153522369 - MIR3 SINE MIR -2 206 107 24 32 0 0 chr4 30767871 30767902 -153520760 + AT_rich Low_complexity Low_complexity 1 31 0 892 172 80 18 chr4 30768896 30769059 -153519603 - FRAM SINE Alu -4 172 1 198 0 0 0 chr4 30769065 30769087 -153519575 + (GAAAA)n Simple_repeat Simple_repeat 2 23 0 390 236 107 29 chr4 30769266 30769406 -153519256 - HAL1 LINE L1 -1345 1162 1012 463 304 53 31 chr4 30769596 30769823 -153518839 - HAL1 LINE L1 -1915 592 361 1650 223 49 29 chr4 30770415 30770438 -153518224 - MLT1C LTR MaLR 0 467 446 2029 107 35 98 chr4 30770438 30770804 -153517858 + MER61A LTR ERV1 1 343 0 1650 223 49 29 chr4 30770804 30771233 -153517429 - MLT1C LTR MaLR -21 446 6 2485 86 0 0 chr4 30771385 30771686 -153516976 - AluSg SINE Alu -9 301 1 262 214 18 36 chr4 30771741 30771797 -153516865 + L2 LINE L2 3201 3255 -17 321 303 24 79 chr4 30771990 30772244 -153516418 + L2 LINE L2 2853 3092 -180 761 128 0 26 chr4 30772552 30772669 -153515993 + FLAM_C SINE Alu 19 132 -11 1316 248 49 27 chr4 30773021 30773428 -153515234 + LTR16C LTR ERVL 74 489 -2 1955 81 24 0 chr4 30773528 30773775 -153514887 + AluSx SINE Alu 1 253 -59 455 247 147 17 chr4 30774613 30774722 -153513940 - L1ME4a LINE L1 -31 6090 5997 255 61 0 0 chr4 30774722 30774755 -153513907 + (TG)n Simple_repeat Simple_repeat 2 34 0 455 247 147 17 chr4 30774755 30774876 -153513786 - L1ME4a LINE L1 -124 5997 5830 237 361 72 0 chr4 30775198 30775378 -153513284 - MIR3 SINE MIR -9 199 7 819 211 23 0 chr4 30777086 30777257 -153511405 - MER45A DNA AcHobo -1 177 3 593 295 14 17 chr4 30777380 30777641 -153511021 - MIR SINE MIR 0 262 45 307 320 145 13 chr4 30777861 30778089 -153510573 - MIR SINE MIR -1 261 4 180 286 0 0 chr4 30778093 30778135 -153510527 + L3 LINE CR1 1533 1574 -3 1329 240 35 9 chr4 30778752 30778981 -153509681 - MLT1C LTR MaLR -43 424 182 1927 158 23 0 chr4 30778981 30779285 -153509377 - AluJo SINE Alu -1 311 1 1329 240 35 9 chr4 30779285 30779401 -153509261 - MLT1C LTR MaLR -285 182 70 536 270 46 49 chr4 30779401 30779686 -153508976 - MER34B LTR ERV1 0 565 282 292 264 104 9 chr4 30779781 30779887 -153508775 - MER34B LTR ERV1 -449 116 1 658 187 110 87 chr4 30780013 30780232 -153508430 - MIR SINE MIR -11 251 28 7854 87 7 19 chr4 30780478 30781561 -153507101 + MER11C LTR ERVK 3 1071 0 745 291 141 6 chr4 30781624 30781944 -153506718 + L2 LINE L2 2951 3313 0 213 243 0 0 chr4 30782007 30782044 -153506618 + L2 LINE L2 3183 3219 -94 237 267 19 27 chr4 30782998 30783101 -153505561 + MIR SINE MIR 16 114 -94 580 125 0 31 chr4 30783290 30783386 -153505276 - MER8 DNA MER2_type 0 239 147 1688 119 16 4 chr4 30783387 30783638 -153505024 + AluSx SINE Alu 1 254 -58 1197 165 0 30 chr4 30784432 30784632 -153504030 + AluJo SINE Alu 85 278 -34 180 0 0 0 chr4 30784632 30784652 -153504010 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 332 253 79 105 chr4 30784747 30784937 -153503725 + MLT1L LTR MaLR 22 206 -409 2292 107 0 0 chr4 30785153 30785453 -153503209 - AluSx SINE Alu -12 300 1 580 125 0 31 chr4 30785454 30785550 -153503112 + MER8 DNA MER2_type 147 239 0 237 267 19 27 chr4 30785740 30785843 -153502819 - MIR SINE MIR -94 114 16 435 303 20 25 chr4 30786140 30786367 -153502295 + CT-rich Low_complexity Low_complexity 1 225 0 1531 188 52 4 chr4 30786802 30787073 -153501589 - AluJo SINE Alu -15 297 14 532 291 6 18 chr4 30787188 30787353 -153501309 - L2 LINE L2 -317 2996 2834 1577 237 100 59 chr4 30787386 30787481 -153501181 - L2 LINE L2 -958 2356 2266 2128 142 30 0 chr4 30787481 30787784 -153500878 + AluJo SINE Alu 1 312 0 1577 237 100 59 chr4 30787784 30788379 -153500283 - L2 LINE L2 -1048 2266 1638 273 286 0 0 chr4 30790687 30790750 -153497912 - MIR SINE MIR -107 155 93 2637 64 0 0 chr4 30791800 30792111 -153496551 + AluY SINE Alu 1 311 0 412 252 102 118 chr4 30792139 30792385 -153496277 - MIR SINE MIR 0 262 21 310 315 241 5 chr4 30792435 30792638 -153496024 + MIR SINE MIR 1 251 -11 228 217 19 0 chr4 30792760 30792812 -153495850 + MIR SINE MIR 104 155 -58 180 271 0 42 chr4 30793297 30793345 -153495317 + L2 LINE L2 3262 3307 -6 213 132 0 0 chr4 30793535 30793573 -153495089 + (GA)n Simple_repeat Simple_repeat 1 38 0 278 213 12 25 chr4 30793685 30793765 -153494897 + MLT1L LTR MaLR 6 84 -531 808 243 200 14 chr4 30793785 30794290 -153494372 + MLT2F LTR ERVL 3 660 -3 688 256 182 9 chr4 30794312 30794659 -153494003 + MLT1L LTR MaLR 130 536 -79 2521 165 50 42 chr4 30794665 30794814 -153493848 - MER44D DNA MER2_type -1882 605 459 2216 131 34 22 chr4 30794814 30795172 -153493490 + THE1B LTR MaLR 1 362 -2 2521 165 50 42 chr4 30795172 30795568 -153493094 - MER44D DNA MER2_type -2028 459 1 272 194 16 16 chr4 30795570 30795632 -153493030 + MLT1L LTR MaLR 544 605 -10 244 232 73 12 chr4 30796055 30796137 -153492525 + LTR50 LTR ERVL 128 214 -581 248 171 122 0 chr4 30796515 30796597 -153492065 + LTR33A LTR ERVL 417 508 -15 290 315 62 70 chr4 30796616 30796712 -153491950 - MLT1K LTR MaLR -71 517 422 1668 171 0 59 chr4 30796712 30796894 -153491768 - AluJo SINE Alu -10 302 146 2068 142 0 13 chr4 30796894 30797197 -153491465 - AluSx SINE Alu -13 299 1 1668 171 0 59 chr4 30797197 30797335 -153491327 - AluJo SINE Alu -166 146 1 290 315 62 70 chr4 30797335 30797641 -153491021 - MLT1K LTR MaLR -166 422 118 1334 151 14 5 chr4 30797817 30798036 -153490626 - MSTB LTR MaLR -4 422 202 1956 146 17 14 chr4 30798095 30798409 -153490253 - AluSx SINE Alu 0 312 1 218 246 59 42 chr4 30798901 30799019 -153489643 + L2 LINE L2 2939 3058 -214 1054 276 50 31 chr4 30799502 30799894 -153488768 - LTR16C LTR ERVL 0 491 87 1816 171 16 68 chr4 30799894 30800279 -153488383 + MLT1A1 LTR MaLR 1 365 0 1054 276 50 31 chr4 30800279 30800367 -153488295 - LTR16C LTR ERVL -404 87 2 423 263 71 45 chr4 30801249 30801447 -153487215 - MIR SINE MIR -48 214 12 437 267 85 23 chr4 30801923 30802099 -153486563 - MIR3 SINE MIR -17 191 5 279 150 0 0 chr4 30802117 30802177 -153486485 + (TG)n Simple_repeat Simple_repeat 2 61 0 2175 116 7 3 chr4 30802641 30802935 -153485727 + AluSx SINE Alu 1 295 -17 493 196 162 17 chr4 30802939 30803118 -153485544 + MLT1K LTR MaLR 261 465 -123 4127 126 172 97 chr4 30803120 30804551 -153484111 - pTR5 LTR ERV1 0 2438 743 1067 197 10 15 chr4 30804639 30804842 -153483820 + MIR SINE MIR 37 238 -24 1038 260 25 1 chr4 30804878 30805176 -153483486 - MLT1I LTR MaLR -24 385 41 25 0 0 0 chr4 30805278 30805303 -153483359 + AT_rich Low_complexity Low_complexity 1 25 0 1585 170 21 35 chr4 30805303 30805591 -153483071 - AluJo SINE Alu -24 288 5 1297 201 33 41 chr4 30805895 30806263 -153482399 - LTR16A1 LTR ERVL -91 366 2 652 267 134 43 chr4 30806924 30807156 -153481506 - MIR SINE MIR 0 262 10 246 226 0 0 chr4 30807229 30807282 -153481380 + MLT1J1 LTR MaLR 3 55 -391 188 275 0 0 chr4 30807289 30807329 -153481333 - MER5A DNA MER1_type 0 189 150 226 310 96 50 chr4 30807460 30807506 -153481156 - L2 LINE L2 -213 3059 3017 2190 120 13 3 chr4 30807506 30807814 -153480848 - AluSq SINE Alu -2 311 1 226 310 96 50 chr4 30807814 30808006 -153480656 - L2 LINE L2 -255 3017 2810 652 333 12 32 chr4 30808660 30808906 -153479756 + MIR SINE MIR 21 261 -1 303 303 154 34 chr4 30809549 30809906 -153478756 + L2 LINE L2 2565 2964 -350 420 301 56 42 chr4 30809983 30810126 -153478536 + L2 LINE L2 3126 3270 -2 2411 77 20 3 chr4 30810131 30810430 -153478232 - AluSp SINE Alu -9 304 1 3662 176 52 54 chr4 30811441 30812313 -153476349 + L1MC4 LINE L1 7168 8037 -5 1959 113 8 0 chr4 30812322 30812578 -153476084 + AluSx SINE Alu 1 258 -54 249 33 0 0 chr4 30812582 30812612 -153476050 + (TAA)n Simple_repeat Simple_repeat 1 30 0 219 296 34 34 chr4 30812618 30812706 -153475956 + MIR SINE MIR 35 122 -86 196 204 23 0 chr4 30812944 30812988 -153475674 - MIR SINE MIR -5 257 213 2041 144 0 0 chr4 30813341 30813646 -153475016 + AluSx SINE Alu 1 305 -7 201 305 12 49 chr4 30814028 30814110 -153474552 - MIR SINE MIR -135 127 49 280 293 164 29 chr4 30814447 30814609 -153474053 + MIR SINE MIR 1 183 -79 269 241 0 0 chr4 30816292 30816350 -153472312 - MIR SINE MIR -69 139 82 183 80 0 0 chr4 30817775 30817800 -153470862 + (A)n Simple_repeat Simple_repeat 1 25 0 420 257 35 0 chr4 30818420 30818533 -153470129 - MER117 DNA MER1_type -74 123 7 395 257 64 36 chr4 30818898 30819038 -153469624 + MIR SINE MIR 113 256 -6 1018 169 22 0 chr4 30819130 30819313 -153469349 + MER53 DNA DNA 1 187 -2 570 257 46 46 chr4 30819404 30819622 -153469040 + MER112 DNA MER1_type 4 221 -39 1250 206 20 19 chr4 30819628 30819717 -153468945 + MER58B DNA MER1_type 2 89 -2331 1743 180 23 3 chr4 30819717 30820023 -153468639 + AluSx SINE Alu 1 312 0 1250 206 20 19 chr4 30820023 30820316 -153468346 + MER58B DNA MER1_type 89 340 -1 761 212 145 6 chr4 30821060 30821239 -153467423 + MER58A DNA MER1_type 21 224 0 334 308 44 10 chr4 30822270 30822407 -153466255 + MIR SINE MIR 13 153 -55 517 260 6 44 chr4 30822495 30822676 -153465986 + L1ME LINE L1 5502 5675 -446 323 331 22 38 chr4 30822849 30823033 -153465629 - MIR SINE MIR -16 246 66 1406 208 77 55 chr4 30824454 30824906 -153463756 - MLT1C LTR MaLR 0 467 6 212 358 17 17 chr4 30825164 30825284 -153463378 + L2 LINE L2 2583 2702 -612 1615 186 64 59 chr4 30825542 30825998 -153462664 + MLT1C LTR MaLR 6 463 -4 454 325 45 0 chr4 30826014 30826171 -153462491 + MER91A DNA MER1_type 1 164 -32 295 272 162 98 chr4 30826181 30826446 -153462216 + L2 LINE L2 2989 3270 -2 303 210 51 35 chr4 30827467 30827591 -153461071 + MIR SINE MIR 19 146 -62 1959 107 0 52 chr4 30827604 30827894 -153460768 - AluSx SINE Alu -37 275 1 2034 176 19 3 chr4 30829119 30829478 -153459184 + MER47A DNA MER2_type 2 366 0 295 202 45 45 chr4 30829551 30829640 -153459022 - MIR SINE MIR -29 233 145 623 313 22 31 chr4 30829727 30829954 -153458708 - MIR SINE MIR -33 229 5 368 211 137 48 chr4 30830001 30830132 -153458530 - MER57B LTR ERV1 -243 160 42 4236 91 23 0 chr4 30831159 30831720 -153456942 - L1PB2 LINE L1 -4 6147 5574 2004 132 6 26 chr4 30831919 30832230 -153456432 - AluSx SINE Alu -7 305 1 445 293 98 32 chr4 30832509 30832725 -153455937 + MLT1G1 LTR MaLR 83 333 -262 1801 153 13 13 chr4 30832725 30833025 -153455637 + AluJb SINE Alu 9 308 -4 445 293 98 32 chr4 30833025 30833087 -153455575 + MLT1G1 LTR MaLR 333 389 -206 281 172 149 23 chr4 30833157 30833244 -153455418 + MLT1G1 LTR MaLR 498 595 0 205 321 70 95 chr4 30833252 30833769 -153454893 - L2 LINE L2 -1105 2209 1706 259 287 125 37 chr4 30833948 30834084 -153454578 + MIR3 SINE MIR 50 197 -11 4501 137 34 4 chr4 30834658 30835375 -153453287 - L1PB4 LINE L1 -7 6149 5412 610 233 31 31 chr4 30835497 30835626 -153453036 + FLAM_A SINE Alu 1 129 -4 225 94 0 0 chr4 30835626 30835658 -153453004 + (GA)n Simple_repeat Simple_repeat 1 32 0 * 300 107 0 67 chr4 30835655 30835730 -153452932 + (GGAA)n Simple_repeat Simple_repeat 4 73 0 797 246 8 90 chr4 30836168 30836424 -153452238 + MIR SINE MIR 7 241 -21 186 43 0 0 chr4 30836462 30836485 -153452177 + (T)n Simple_repeat Simple_repeat 1 23 0 900 293 54 103 chr4 30836696 30837591 -153451071 - L2 LINE L2 -1 3312 2464 1696 204 23 15 chr4 30837593 30837655 -153451007 + L1M4 LINE L1 903 963 -5579 2535 98 55 6 chr4 30837655 30838002 -153450660 - THE1B LTR MaLR 0 364 1 1696 204 23 15 chr4 30838002 30838335 -153450327 + L1M4 LINE L1 963 1301 -5241 2078 205 80 21 chr4 30838533 30839006 -153449656 - MLT1F1 LTR MaLR 0 567 67 2559 173 33 69 chr4 30839822 30840361 -153448301 + MLT2B1 LTR ERVL 1 520 0 261 341 8 16 chr4 30840970 30841099 -153447563 - L2 LINE L2 -2 3311 3184 358 310 67 50 chr4 30841143 30841382 -153447280 + L2 LINE L2 3003 3245 -68 212 288 34 0 chr4 30842725 30842784 -153445878 - MIR SINE MIR -73 189 129 1160 165 0 30 chr4 30843070 30843270 -153445392 + AluJo SINE Alu 85 278 -34 180 0 0 0 chr4 30843270 30843290 -153445372 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 358 253 79 105 chr4 30843385 30843575 -153445087 + MLT1L LTR MaLR 22 206 -409 1162 261 66 52 chr4 30843810 30844312 -153444350 + MLT1J LTR MaLR 3 511 0 288 231 0 15 chr4 30844365 30844430 -153444232 + MLT1L LTR MaLR 552 615 0 34 24 0 0 chr4 30845130 30845171 -153443491 + AT_rich Low_complexity Low_complexity 1 41 0 2031 156 0 0 chr4 30847620 30847915 -153440747 + AluSx SINE Alu 3 297 -15 650 274 97 15 chr4 30848459 30848693 -153439969 + MIR SINE MIR 2 248 -14 396 336 41 36 chr4 30848767 30848969 -153439693 + MIR SINE MIR 21 221 -27 2161 129 7 0 chr4 30849106 30849408 -153439254 - AluSx SINE Alu -8 304 1 381 22 0 0 chr4 30849414 30849460 -153439202 + (TC)n Simple_repeat Simple_repeat 2 47 0 198 0 0 0 chr4 30849499 30849521 -153439141 + (TC)n Simple_repeat Simple_repeat 2 23 0 245 343 20 0 chr4 30850712 30850811 -153437851 + LTR67 LTR ERVL 450 550 -7 1911 125 37 10 chr4 30852541 30852838 -153435824 - AluSq SINE Alu -8 305 1 230 173 0 19 chr4 30853953 30853962 -153434700 + (TATG)n Simple_repeat Simple_repeat 1 9 -42 2287 94 10 0 chr4 30853962 30854259 -153434403 + AluSq SINE Alu 1 300 -13 230 173 0 19 chr4 30854259 30854301 -153434361 + (TATG)n Simple_repeat Simple_repeat 9 51 0 202 133 0 67 chr4 30854491 30854551 -153434111 + (TATATG)n Simple_repeat Simple_repeat 5 60 0 1810 193 90 10 chr4 30854568 30854968 -153433694 - MER63B DNA MER1_type -1 435 4 2256 67 0 0 chr4 30855175 30855443 -153433219 - AluY SINE Alu -17 294 27 462 291 107 21 chr4 30857384 30857618 -153431044 + MIR SINE MIR 2 255 -7 21 0 0 0 chr4 30857647 30857668 -153430994 + AT_rich Low_complexity Low_complexity 1 21 0 235 203 16 23 chr4 30857708 30857836 -153430826 + (TA)n Simple_repeat Simple_repeat 1 127 0 208 279 29 67 chr4 30857916 30858020 -153430642 - L2 LINE L2 -4 3268 3169 523 332 32 32 chr4 30858735 30858988 -153429674 + MIR SINE MIR 10 262 0 234 0 0 0 chr4 30860501 30860527 -153428135 + (T)n Simple_repeat Simple_repeat 1 26 0 518 159 9 0 chr4 30860727 30860834 -153427828 + GA-rich Low_complexity Low_complexity 5 112 0 314 320 134 43 chr4 30861186 30861349 -153427313 - MIR SINE MIR -30 178 14 212 276 0 0 chr4 30861656 30861714 -153426948 + T-rich Low_complexity Low_complexity 1 58 0 469 286 161 30 chr4 30861776 30862143 -153426519 + MLT1K LTR MaLR 164 578 -10 935 227 84 0 chr4 30862516 30862719 -153425943 - MER58A DNA MER1_type -1 223 4 6903 117 64 26 chr4 30862819 30863842 -153424820 - Tigger3b DNA MER2_type -1797 1231 155 4321 114 31 1 chr4 30863842 30864201 -153424461 - L1PB1 LINE L1 -1 6150 5762 315 0 0 0 chr4 30864201 30864236 -153424426 + (TA)n Simple_repeat Simple_repeat 1 35 0 4321 114 31 1 chr4 30864236 30864527 -153424135 - L1PB1 LINE L1 -389 5762 5481 6903 117 64 26 chr4 30864527 30864689 -153423973 - Tigger3b DNA MER2_type -2873 155 1 1335 211 55 49 chr4 30864689 30865015 -153423647 - MLT1J LTR MaLR -109 402 75 2145 122 0 0 chr4 30865290 30865586 -153423076 + AluSx SINE Alu 1 296 -16 301 235 112 20 chr4 30865954 30866052 -153422610 - L2 LINE L2 -27 3286 3180 843 267 0 6 chr4 30866829 30867005 -153421657 - LTR16A LTR ERVL -260 190 16 235 329 101 57 chr4 30867415 30867573 -153421089 - L2 LINE L2 -190 3082 2918 700 253 48 11 chr4 30868164 30868350 -153420312 - MIR SINE MIR 0 262 70 2135 138 41 39 chr4 30868463 30868826 -153419836 + THE1B LTR MaLR 1 364 0 331 248 130 50 chr4 30868865 30869057 -153419605 - MIR SINE MIR -56 206 3 430 306 52 16 chr4 30869213 30869406 -153419256 + MIR3 SINE MIR 7 206 -2 2101 112 3 0 chr4 30869629 30869933 -153418729 - AluSx SINE Alu -7 305 1 307 217 70 77 chr4 30871037 30871180 -153417482 - MER112 DNA MER1_type -9 251 110 213 65 0 0 chr4 30871194 30871225 -153417437 + (CA)n Simple_repeat Simple_repeat 2 32 0 929 175 32 16 chr4 30871286 30871475 -153417187 + MLT1D LTR MaLR 6 197 -308 608 261 13 7 chr4 30871483 30871636 -153417026 + MLT1D LTR MaLR 350 503 -2 180 0 0 0 chr4 30872494 30872514 -153416148 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 196 355 21 21 chr4 30872972 30873065 -153415597 - MIR SINE MIR -56 206 114 670 219 22 0 chr4 30873067 30873204 -153415458 + FLAM_C SINE Alu 2 141 -2 183 288 40 64 chr4 30873204 30873248 -153415414 - MIR3 SINE MIR -84 124 80 1862 177 24 12 chr4 30873248 30873581 -153415081 + MER1B DNA MER1_type 1 337 0 183 288 40 64 chr4 30873581 30873661 -153415001 - MIR3 SINE MIR -128 80 3 205 297 139 10 chr4 30873980 30874081 -153414581 + MIR SINE MIR 23 136 -126 685 208 8 0 chr4 30874117 30874242 -153414420 - MER45A DNA AcHobo -52 126 1 222 295 89 18 chr4 30874343 30874455 -153414207 + MER5A DNA MER1_type 45 164 -25 186 333 74 25 chr4 30874399 30874480 -153414182 - MER5A DNA MER1_type -98 91 7 * 373 270 40 0 chr4 30875055 30875155 -153413507 - MIR SINE MIR -41 221 118 532 262 35 47 chr4 30875195 30875367 -153413295 - MIR SINE MIR -73 189 20 2099 147 45 17 chr4 30875658 30876012 -153412650 - THE1B LTR MaLR 0 364 1 296 299 91 86 chr4 30876497 30876718 -153411944 - MIR SINE MIR -27 235 14 251 281 66 41 chr4 30877275 30877396 -153411266 + MIR SINE MIR 30 153 -109 631 292 92 77 chr4 30877550 30878070 -153410592 + MLT1K LTR MaLR 39 566 -22 422 259 75 20 chr4 30878965 30879112 -153409550 + MIR SINE MIR 106 260 -2 271 291 13 13 chr4 30879794 30879873 -153408789 + MIR SINE MIR 72 150 -112 732 245 115 36 chr4 30880076 30880329 -153408333 - MLT1K LTR MaLR 0 615 316 351 0 0 0 chr4 30880606 30880645 -153408017 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 575 321 110 5 chr4 30880783 30880992 -153407670 + MIR SINE MIR 15 245 -17 1899 165 18 3 chr4 30881289 30881628 -153407034 - L1MA5 LINE L1 -5 6295 5952 240 35 0 0 chr4 30882622 30882651 -153406011 + (TG)n Simple_repeat Simple_repeat 1 29 0 1951 114 0 0 chr4 30882664 30882928 -153405734 - AluSx SINE Alu -30 282 19 915 271 51 26 chr4 30883031 30883304 -153405358 + L2 LINE L2 2537 2816 -498 604 220 215 16 chr4 30883309 30883495 -153405167 + MLT1G1 LTR MaLR 343 588 -2 1760 167 0 3 chr4 30883509 30883809 -153404853 + AluJb SINE Alu 1 299 -13 2089 131 3 0 chr4 30884130 30884436 -153404226 - AluSx SINE Alu -5 307 1 634 291 64 37 chr4 30884819 30885115 -153403547 - L3 LINE CR1 -636 941 638 1936 212 18 20 chr4 30885736 30885800 -153402862 + L1M4 LINE L1 4787 4850 -1296 1598 189 3 31 chr4 30885800 30886117 -153402545 - AluJb SINE Alu -4 308 1 1936 212 18 20 chr4 30886117 30886501 -153402161 + L1M4 LINE L1 4850 5234 -912 458 296 83 92 chr4 30886501 30886956 -153401706 - L2 LINE L2 -89 3224 2777 486 231 50 31 chr4 30887024 30887184 -153401478 - LTR67 LTR ERVL 0 557 395 445 314 0 8 chr4 30887364 30887485 -153401177 - LTR67 LTR ERVL -391 166 47 786 81 18 0 chr4 30887489 30887600 -153401062 - AluY SINE Alu -10 301 189 966 306 77 38 chr4 30887664 30887763 -153400899 - L2 LINE L2 -660 2654 2560 803 191 73 11 chr4 30887763 30887941 -153400721 + MER5A DNA MER1_type 1 189 0 966 306 77 38 chr4 30887941 30888504 -153400158 - L2 LINE L2 -754 2560 1966 280 318 68 23 chr4 30889060 30889192 -153399470 + MIR3 SINE MIR 11 148 -60 1883 168 115 6 chr4 30889328 30889685 -153398977 + MSTD LTR MaLR 1 396 0 234 300 27 40 chr4 30890123 30890273 -153398389 - MIR3 SINE MIR -35 173 26 390 297 0 0 chr4 30890327 30890418 -153398244 - MIR SINE MIR -5 257 167 * 511 268 176 0 chr4 30890415 30890557 -153398105 + MIR SINE MIR 77 243 -19 318 336 6 0 chr4 30891456 30891570 -153397092 - MIR SINE MIR -55 153 41 272 242 15 0 chr4 30892248 30892314 -153396348 + MLT1I LTR MaLR 327 393 -16 196 318 0 0 chr4 30892328 30892372 -153396290 - MIR SINE MIR -161 101 58 564 291 143 14 chr4 30892382 30892605 -153396057 - MIR SINE MIR -9 253 2 5592 114 28 12 chr4 30892795 30893642 -153395020 - Tigger4(Zombi) DNA MER2_type 0 2731 1871 512 111 14 0 chr4 30893641 30893713 -153394949 - Tigger4(Zombi) DNA MER2_type -2587 144 72 * 884 78 0 0 chr4 30893713 30893828 -153394834 + AluSg/x SINE Alu 178 292 -20 330 190 0 0 chr4 30893828 30893886 -153394776 - Tigger4(Zombi) DNA MER2_type -2673 58 1 570 307 84 31 chr4 30894059 30894284 -153394378 + MIR SINE MIR 20 256 -6 1621 206 130 3 chr4 30894488 30894866 -153393796 - MSTB LTR MaLR 0 426 1 2127 96 0 0 chr4 30895305 30895586 -153393076 - AluSx SINE Alu -12 300 20 324 313 120 19 chr4 30895877 30896085 -153392577 + MIR SINE MIR 34 262 0 195 184 0 0 chr4 30896342 30896380 -153392282 + (TA)n Simple_repeat Simple_repeat 2 39 0 2106 129 0 0 chr4 30896437 30896746 -153391916 + AluSx SINE Alu 1 309 -3 388 265 169 7 chr4 30896894 30897030 -153391632 - MIR SINE MIR -77 185 28 269 249 7 74 chr4 30897526 30897659 -153391003 + AluJ/FRAM SINE Alu 227 291 -11 1297 250 165 56 chr4 30897690 30897805 -153390857 + L2 LINE L2 2355 2456 -857 2379 69 13 0 chr4 30897805 30898110 -153390552 - AluY SINE Alu -2 309 1 1297 250 165 56 chr4 30898110 30898848 -153389814 + L2 LINE L2 2456 3309 -4 2161 114 62 28 chr4 30899797 30900149 -153388513 - THE1B LTR MaLR 0 364 1 1013 182 223 31 chr4 30900491 30900557 -153388105 + L1ME1 LINE L1 5808 5860 -306 1280 171 9 0 chr4 30900557 30900774 -153387888 + MER20 DNA MER1_type 1 219 0 1013 182 223 31 chr4 30900774 30900998 -153387664 + L1ME1 LINE L1 5860 6154 -12 1811 156 0 28 chr4 30901132 30901452 -153387210 + AluJb SINE Alu 1 311 -1 579 227 25 12 chr4 30901562 30901576 -153387086 - L1MA10 LINE L1 0 6334 6321 384 323 46 26 chr4 30901576 30901771 -153386891 - L1ME1 LINE L1 -5 6161 5963 1946 151 0 0 chr4 30902326 30902638 -153386024 - AluJb SINE Alu 0 312 1 2749 162 32 0 chr4 30902990 30903490 -153385172 - L1MB3 LINE L1 -7 6176 5661 212 0 36 0 chr4 30903589 30903617 -153385045 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 211 333 42 0 chr4 30905565 30905661 -153383001 + L2 LINE L2 2745 2844 -470 * 268 313 107 27 chr4 30905638 30905750 -153382912 + L2 LINE L2 3102 3222 -50 215 146 24 0 chr4 30905761 30905802 -153382860 + GA-rich Low_complexity Low_complexity 2 43 0 682 171 9 0 chr4 30906188 30906299 -153382363 - FRAM SINE Alu -11 165 54 1313 244 132 28 chr4 30906338 30906777 -153381885 - L2 LINE L2 -1145 2169 1670 2218 76 0 20 chr4 30906777 30907081 -153381581 + AluSg1 SINE Alu 1 298 -11 1313 244 132 28 chr4 30907081 30907140 -153381522 - L2 LINE L2 -1644 1670 1619 24 32 0 0 chr4 30907432 30907463 -153381199 + AT_rich Low_complexity Low_complexity 1 31 0 355 241 149 0 chr4 30907567 30907654 -153381008 - L2 LINE L2 -1 3312 3213 333 353 75 6 chr4 30908399 30908572 -153380090 + MIR SINE MIR 12 196 -66 206 261 0 0 chr4 30908675 30908721 -153379941 + (TATG)n Simple_repeat Simple_repeat 1 46 0 859 293 79 38 chr4 30909319 30909711 -153378951 + LTR33A LTR ERVL 2 409 -114 253 162 15 73 chr4 30910145 30910213 -153378449 + MLT1H LTR MaLR 20 83 -459 700 222 122 71 chr4 30910355 30910666 -153377996 + MLT1H LTR MaLR 217 543 -6 263 305 43 105 chr4 30912077 30912287 -153376375 + L2 LINE L2 3075 3271 -1 232 307 59 30 chr4 30912309 30912410 -153376252 - MIR SINE MIR -147 115 12 300 328 9 17 chr4 30912492 30912608 -153376054 - MIR3 SINE MIR -5 203 89 2000 112 0 17 chr4 30912689 30912985 -153375677 - AluSx SINE Alu -20 292 2 208 189 0 38 chr4 30916202 30916255 -153372407 + CT-rich Low_complexity Low_complexity 4 54 0 394 310 121 55 chr4 30916288 30916488 -153372174 + L2 LINE L2 1776 1961 -1353 1621 138 0 50 chr4 30916488 30916786 -153371876 - AluJb SINE Alu -17 295 13 394 310 121 55 chr4 30916786 30917166 -153371496 + L2 LINE L2 1961 2394 -920 463 278 204 21 chr4 30917294 30917485 -153371177 - MIR SINE MIR 0 262 37 820 250 56 49 chr4 30917832 30918116 -153370546 - MLT1J LTR MaLR -2 509 224 242 158 0 0 chr4 30918238 30918276 -153370386 - L1MD3 LINE L1 -228 7767 7730 2219 254 84 33 chr4 30918286 30919011 -153369651 - MER69B DNA AcHobo -258 968 207 684 167 83 5 chr4 30919023 30919215 -153369447 + MER69B DNA AcHobo 1004 1210 -16 1737 148 0 3 chr4 30919225 30919508 -153369154 + AluJo SINE Alu 1 282 -30 276 30 0 0 chr4 30919508 30919541 -153369121 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 357 204 169 38 chr4 30920127 30920355 -153368307 + LTR16C LTR ERVL 158 467 -24 734 229 78 33 chr4 30922255 30922666 -153365996 + MLT1K LTR MaLR 100 576 -12 213 39 0 0 chr4 30922666 30922692 -153365970 + (CA)n Simple_repeat Simple_repeat 1 26 0 2327 158 35 5 chr4 30923278 30923336 -153365326 - MER41B LTR ERV1 0 635 580 1760 141 30 3 chr4 30923336 30923633 -153365029 + AluSx SINE Alu 1 305 -7 2327 158 35 5 chr4 30923633 30923980 -153364682 - MER41B LTR ERV1 -55 580 218 446 81 0 0 chr4 30923981 30924043 -153364619 + Alu SINE Alu 240 301 -11 369 305 93 13 chr4 30924679 30924830 -153363832 + L2 LINE L2 3110 3272 0 315 323 0 0 chr4 30924925 30925021 -153363641 + MER34 LTR ERV1 1 96 -446 1594 195 98 30 chr4 30925026 30925487 -153363175 + LTR48B LTR ERV1 151 642 -2 602 219 178 56 chr4 30925540 30925782 -153362880 + MLT1H LTR MaLR 222 506 -43 2283 116 48 20 chr4 30925782 30926136 -153362526 + THE1B LTR MaLR 1 364 0 602 219 178 56 chr4 30926136 30926180 -153362482 + MLT1H LTR MaLR 506 543 -6 238 329 24 12 chr4 30926190 30926272 -153362390 - MIR SINE MIR -63 145 63 758 183 71 24 chr4 30926458 30926627 -153362035 + MER5B DNA MER1_type 2 178 0 260 255 57 66 chr4 30926660 30926766 -153361896 + L3 LINE CR1 1186 1290 -287 1921 176 32 19 chr4 30927054 30927423 -153361239 - MLT1A2 LTR MaLR 0 374 1 443 282 173 0 chr4 30927759 30927915 -153360747 + MER5A DNA MER1_type 7 189 0 845 283 55 0 chr4 30930116 30930335 -153358327 - MIR SINE MIR -27 235 5 362 236 32 71 chr4 30930493 30930663 -153357999 + MER5B DNA MER1_type 9 173 -16 297 309 40 47 chr4 30930538 30930687 -153357975 - MER5A DNA MER1_type -41 148 1 * 247 345 56 25 chr4 30930844 30931041 -153357621 - L2 LINE L2 -188 3084 2882 360 0 0 0 chr4 30931473 30931513 -153357149 + (CA)n Simple_repeat Simple_repeat 2 41 0 351 282 126 24 chr4 30931855 30932061 -153356601 - MLT1K LTR MaLR -3 585 359 263 254 32 0 chr4 30932148 30932211 -153356451 - MLT1K LTR MaLR -367 221 157 210 315 81 34 chr4 30932364 30932513 -153356149 - L2 LINE L2 -185 3087 2932 685 124 25 58 chr4 30932676 30932797 -153355865 + AluJ SINE Alu 6 122 -190 396 243 0 0 chr4 30932797 30932908 -153355754 + (TA)n Simple_repeat Simple_repeat 1 111 0 946 169 18 0 chr4 30932910 30933076 -153355586 + AluJ SINE Alu 131 299 -13 349 300 107 29 chr4 30933448 30933588 -153355074 - L2 LINE L2 0 3272 3122 189 0 0 0 chr4 30933755 30933776 -153354886 + (GA)n Simple_repeat Simple_repeat 2 22 0 499 271 70 73 chr4 30933906 30934220 -153354442 - L1MDa LINE L1 -1805 4324 4012 526 266 126 33 chr4 30934462 30935331 -153353331 - L1MDa LINE L1 -3139 2990 2031 2157 97 0 57 chr4 30935520 30935851 -153352811 + AluSx SINE Alu 1 312 0 22 0 0 0 chr4 30935874 30935896 -153352766 + AT_rich Low_complexity Low_complexity 1 22 0 231 275 0 0 chr4 30936068 30936137 -153352525 - HAL1 LINE L1 -901 1606 1538 981 277 40 8 chr4 30936147 30936400 -153352262 + MIR SINE MIR 2 262 0 326 261 35 70 chr4 30936403 30936510 -153352152 - L1MDa LINE L1 -4844 1466 1364 1192 40 0 14 chr4 30936510 30936658 -153352004 + L1PA5 LINE L1 6005 6150 -4 326 261 35 70 chr4 30936658 30936692 -153351970 - L1MDa LINE L1 -4946 1364 1330 229 283 50 68 chr4 30936701 30937023 -153351639 - L1MDa LINE L1 -4885 1234 908 2028 141 3 3 chr4 30937023 30937336 -153351326 - AluSp SINE Alu 0 313 1 229 283 50 68 chr4 30937336 30937361 -153351301 - L1MDa LINE L1 -5211 908 884 1599 82 0 32 chr4 30937361 30937581 -153351081 + AluY SINE Alu 86 298 -13 229 283 50 68 chr4 30937581 30937631 -153351031 - L1MDa LINE L1 -5235 884 843 258 351 65 7 chr4 30938483 30938637 -153350025 - L2 LINE L2 -1403 1911 1749 344 270 195 45 chr4 30938739 30938939 -153349723 + MIR SINE MIR 13 242 -20 2000 191 12 11 chr4 30938967 30939347 -153349315 + MLT2D LTR ERVL 8 534 -20 417 179 20 20 chr4 30939350 30939501 -153349161 + (TCTA)n Simple_repeat Simple_repeat 3 153 0 364 286 67 82 chr4 30939508 30939850 -153348812 - L1MEd LINE L1 -4938 1181 845 189 0 0 0 chr4 30939850 30939871 -153348791 + (TCTA)n Simple_repeat Simple_repeat 1 21 0 268 136 15 91 chr4 30939871 30939937 -153348725 + MLT2B3 LTR ERVL 458 552 -2 2357 86 0 0 chr4 30941549 30941853 -153346809 - AluSx SINE Alu -8 304 1 333 259 83 139 chr4 30941944 30942403 -153346259 - MLT1K LTR MaLR 0 588 156 626 226 65 45 chr4 30943030 30943229 -153345433 - MLT1K LTR MaLR -1 587 385 816 281 87 8 chr4 30944022 30944264 -153344398 + MIR SINE MIR 2 262 0 348 269 97 28 chr4 30944340 30944485 -153344177 + MIR SINE MIR 102 256 -6 376 299 147 43 chr4 30944544 30944775 -153343887 - MLT1K LTR MaLR -7 581 327 416 134 0 15 chr4 30944780 30944847 -153343815 + MIR SINE MIR 96 161 -101 620 318 41 34 chr4 30944892 30945159 -153343503 - MLT1K LTR MaLR -276 312 44 320 273 45 45 chr4 30945192 30945324 -153343338 + MIR SINE MIR 13 144 -118 1022 216 56 42 chr4 30945356 30945783 -153342879 - L1MC5 LINE L1 -35 7926 7494 2035 121 3 7 chr4 30945806 30946111 -153342551 - AluSx SINE Alu -8 304 1 524 189 60 153 chr4 30946116 30946213 -153342449 - L1MC5 LINE L1 -135 7826 7722 1957 123 3 20 chr4 30946213 30946514 -153342148 - AluSx SINE Alu -16 296 1 524 189 60 153 chr4 30946514 30946912 -153341750 - L1MC5 LINE L1 -239 7722 7377 479 313 56 0 chr4 30946913 30947108 -153341554 + MIR SINE MIR 16 221 -41 2032 183 27 36 chr4 30947149 30947370 -153341292 + L1MB3 LINE L1 5731 5952 -231 2025 116 18 0 chr4 30947370 30947654 -153341008 + AluSq SINE Alu 3 291 -22 2032 183 27 36 chr4 30947654 30947881 -153340781 + L1MB3 LINE L1 5952 6175 -8 440 267 56 0 chr4 30948754 30948915 -153339747 - LTR16A LTR ERVL -5 445 276 1837 157 26 50 chr4 30948918 30949044 -153339618 - MLT1B LTR MaLR 0 390 263 2165 114 0 13 chr4 30949044 30949359 -153339303 - AluSx SINE Alu -1 311 1 1837 157 26 50 chr4 30949359 30949456 -153339206 - MLT1B LTR MaLR -127 263 165 2177 88 26 3 chr4 30949456 30949761 -153338901 - AluSp SINE Alu -1 312 1 1837 157 26 50 chr4 30949761 30949913 -153338749 - MLT1B LTR MaLR -225 165 23 860 268 61 0 chr4 30949945 30950158 -153338504 - LTR16A LTR ERVL -168 282 57 1478 228 18 73 chr4 30950708 30950953 -153337709 + MLT1C LTR MaLR 42 252 -215 2212 98 3 0 chr4 30950953 30951248 -153337414 + AluSp SINE Alu 1 296 -17 1478 228 18 73 chr4 30951248 30951453 -153337209 + MLT1C LTR MaLR 252 467 0 643 138 0 0 chr4 30951550 30951644 -153337018 + AluJ/FLAM SINE Alu 3 96 -216 2020 133 3 0 chr4 30951644 30951944 -153336718 + AluSx SINE Alu 1 301 -11 180 357 30 60 chr4 30952078 30952378 -153336284 - L2 LINE L2 -338 2976 2686 292 277 209 14 chr4 30952898 30953046 -153335616 + MIR SINE MIR 37 213 -49 240 227 45 73 chr4 30953301 30953411 -153335251 + L1ME LINE L1 5764 5870 -300 498 313 86 15 chr4 30953418 30953616 -153335046 - MIR SINE MIR -17 245 34 267 103 0 0 chr4 30953636 30953675 -153334987 + (CA)n Simple_repeat Simple_repeat 1 39 0 1971 78 3 71 chr4 30953679 30954013 -153334649 - AluSp SINE Alu 0 313 1 1329 247 93 21 chr4 30954075 30954561 -153334101 + LTR33A LTR ERVL 1 521 -2 184 358 12 12 chr4 30954598 30954679 -153333983 + MIR SINE MIR 17 97 -111 1399 162 45 42 chr4 30954710 30955019 -153333643 - AluJo SINE Alu -2 310 1 198 0 0 0 chr4 30955102 30955124 -153333538 + (TG)n Simple_repeat Simple_repeat 1 22 0 1937 111 0 3 chr4 30955272 30955560 -153333102 + AluSx SINE Alu 1 287 -25 198 93 0 116 chr4 30957340 30957383 -153331279 - L2 LINE L2 0 3272 3235 616 264 111 0 chr4 30957427 30957643 -153331019 - L2 LINE L2 -342 2972 2733 620 276 62 58 chr4 30958188 30958359 -153330303 + MIR SINE MIR 37 211 -51 2103 114 7 0 chr4 30958359 30958657 -153330005 + AluSx SINE Alu 1 300 -12 620 276 62 58 chr4 30958657 30958710 -153329952 + MIR SINE MIR 211 262 0 254 324 29 9 chr4 30959023 30959128 -153329534 + MIR SINE MIR 30 136 -72 1560 103 65 0 chr4 30959200 30959432 -153329230 - AluSx SINE Alu -23 289 43 550 231 41 8 chr4 30959432 30959553 -153329109 + MIR SINE MIR 35 159 -103 1960 129 90 31 chr4 30959557 30959914 -153328748 + MLT1B LTR MaLR 1 378 -12 302 318 11 0 chr4 30959924 30960012 -153328650 + MIR SINE MIR 161 249 -13 1993 119 3 17 chr4 30960137 30960439 -153328223 + AluSx SINE Alu 1 298 -14 815 218 78 22 chr4 30960848 30961027 -153327635 + MSTD LTR MaLR 208 396 0 391 199 47 170 chr4 30961035 30961130 -153327532 + MIR SINE MIR 113 179 -83 1958 119 11 0 chr4 30961130 30961416 -153327246 + AluSx SINE Alu 1 289 -23 391 199 47 170 chr4 30961416 30961491 -153327171 + MIR SINE MIR 179 262 0 609 298 132 10 chr4 30961501 30961706 -153326956 - MIR SINE MIR 0 262 33 1171 289 12 56 chr4 30962383 30962881 -153325781 - MLT1J LTR MaLR 0 511 36 272 221 44 0 chr4 30963107 30963175 -153325487 + MIR SINE MIR 118 188 -74 499 252 87 0 chr4 30963216 30963343 -153325319 + MIR SINE MIR 90 227 -35 1339 203 44 15 chr4 30963375 30963646 -153325016 + AluJo SINE Alu 12 290 -22 935 198 142 81 chr4 30963717 30964112 -153324550 - LTR37B LTR ERV1 -2 466 48 713 199 8 0 chr4 30964139 30964270 -153324392 + FLAM_A SINE Alu 1 132 -1 262 95 0 0 chr4 30964284 30964326 -153324336 + L1MA7 LINE L1 6249 6290 -1 231 167 67 17 chr4 30964331 30964391 -153324271 - LTR37B LTR ERV1 -405 63 1 666 244 19 12 chr4 30964560 30964720 -153323942 + MER8 DNA MER2_type 1 161 -78 62 0 0 0 chr4 30964733 30964795 -153323867 + AT_rich Low_complexity Low_complexity 1 62 0 2545 43 3 17 chr4 30964802 30965103 -153323559 + AluY SINE Alu 1 297 -14 697 263 63 70 chr4 30965207 30965538 -153323124 + MLT1H LTR MaLR 212 540 -9 450 53 0 0 chr4 30966371 30966428 -153322234 + (TC)n Simple_repeat Simple_repeat 1 57 0 291 289 33 0 chr4 30966649 30966739 -153321923 - MIR SINE MIR -86 176 84 247 254 14 28 chr4 30967055 30967126 -153321536 + MER103 DNA DNA 64 133 -33 2505 68 0 0 chr4 30967368 30967662 -153321000 - AluY SINE Alu -17 294 1 599 299 39 19 chr4 30967668 30967875 -153320787 - MLT1J LTR MaLR -292 219 9 728 248 78 14 chr4 30967954 30968172 -153320490 - MLT1I LTR MaLR 0 409 178 1237 238 41 33 chr4 30968467 30968838 -153319824 + MLT1H LTR MaLR 90 549 0 408 239 172 75 chr4 30968838 30969082 -153319580 - LTR67 LTR ERVL -46 511 242 424 214 60 119 chr4 30969365 30969566 -153319096 - MLT1L LTR MaLR -421 194 6 487 259 18 0 chr4 30969687 30969799 -153318863 + MER81 DNA DNA 1 114 0 938 234 36 0 chr4 30969971 30970193 -153318469 - MIR SINE MIR -32 230 1 250 192 29 48 chr4 30971698 30971802 -153316860 + (CATATA)n Simple_repeat Simple_repeat 3 104 0 12063 25 2 0 chr4 30973160 30975321 -153313341 - L1PA3 LINE L1 0 6155 3993 19308 50 1 3 chr4 30975321 30977668 -153310994 - L1PA3 LINE L1 -3800 2346 5 1844 169 3 13 chr4 30977703 30978016 -153310646 + AluJb SINE Alu 1 310 -2 338 366 83 24 chr4 30978242 30978447 -153310215 + MIR SINE MIR 46 262 0 849 166 43 7 chr4 30978860 30978999 -153309663 + AluJb SINE Alu 131 274 -38 268 204 48 29 chr4 30979179 30979282 -153309380 - MIR3 SINE MIR -23 185 81 22 0 0 0 chr4 30980021 30980043 -153308619 + AT_rich Low_complexity Low_complexity 1 22 0 314 224 71 12 chr4 30980083 30980168 -153308494 + MIR SINE MIR 146 235 -27 480 281 46 13 chr4 30980203 30980356 -153308306 - MIR SINE MIR -101 161 4 2465 97 0 0 chr4 30980572 30980880 -153307782 - AluSx SINE Alu -4 308 1 1409 267 115 18 chr4 31031172 31031669 -153256993 + L2 LINE L2 2467 3008 -305 330 211 164 19 chr4 31031696 31031800 -153256862 - L1MC4 LINE L1 -1069 6973 6855 22 0 0 0 chr4 31032054 31032076 -153256586 + AT_rich Low_complexity Low_complexity 1 22 0 192 188 0 0 chr4 31032165 31032197 -153256465 + L2 LINE L2 3268 3299 -14 243 0 0 0 chr4 31034392 31034419 -153254243 + (TG)n Simple_repeat Simple_repeat 2 28 0 259 329 12 0 chr4 31034489 31034571 -153254091 - L2 LINE L2 -218 3054 2972 708 160 11 48 chr4 31035275 31035463 -153253199 + L1 LINE L1 2859 3039 -3107 4262 241 91 5 chr4 31035473 31036511 -153252151 + L1PA13 LINE L1 1 1127 -5660 338 119 0 0 chr4 31036511 31036570 -153252092 + L1PA13 LINE L1 1648 1706 -5081 404 251 63 63 chr4 31036670 31036861 -153251801 + MER112 DNA MER1_type 70 260 0 337 167 225 0 chr4 31037372 31037482 -153251180 + MIR SINE MIR 50 189 -73 4698 144 8 13 chr4 31037822 31038602 -153250060 + THE1B-int LTR MaLR 568 1343 -237 1648 113 0 4 chr4 31038602 31038841 -153249821 + THE1B LTR MaLR 127 364 0 987 218 0 0 chr4 31038844 31039050 -153249612 - L1P LINE L1 -3347 2799 2594 6020 139 36 6 chr4 31039150 31040241 -153248421 - Tigger1 DNA MER2_type -531 1887 765 398 95 16 0 chr4 31040356 31040419 -153248243 - MER31A LTR ERV1 -420 65 2 1422 111 10 14 chr4 31041178 31041385 -153247277 - AluSg/x SINE Alu -14 298 93 391 313 89 18 chr4 31041486 31041710 -153246952 - L1MEc LINE L1 -4246 2150 1911 21 36 0 0 chr4 31042384 31042412 -153246250 + AT_rich Low_complexity Low_complexity 1 28 0 185 344 0 0 chr4 31042492 31042553 -153246109 + L2 LINE L2 3247 3307 -6 4304 40 8 0 chr4 31042688 31043469 -153245193 - L1P2 LINE L1 -354 5801 5017 3278 50 5 0 chr4 31043465 31043903 -153244759 + L1P LINE L1 3666 4105 -2041 * 5926 131 19 20 chr4 31044003 31045021 -153243641 + MER11C LTR ERVK 55 1071 0 1937 109 0 4 chr4 31045021 31045297 -153243365 + HERVK11 LTR ERVK 1 275 -7678 222 37 0 0 chr4 31045401 31045428 -153243234 + (TG)n Simple_repeat Simple_repeat 2 28 0 2172 160 75 55 chr4 31046789 31047295 -153241367 + LTR44 LTR ERV1 2 517 -2 321 318 16 0 chr4 31047997 31048126 -153240536 + L1ME2 LINE L1 5535 5665 -2330 1087 265 106 26 chr4 31048141 31048631 -153240031 - MLT1H1 LTR MaLR -15 540 12 1255 193 105 55 chr4 31048643 31049100 -153239562 + L1ME2 LINE L1 5676 6155 -9 228 289 167 18 chr4 31049964 31050078 -153238584 + L2 LINE L2 3142 3272 0 4342 75 0 61 chr4 31050937 31051663 -153236999 + MER11A LTR ERVK 439 1261 -5 654 13 0 0 chr4 31051665 31051740 -153236922 + (TA)n Simple_repeat Simple_repeat 1 75 0 985 248 11 7 chr4 31051744 31052014 -153236648 - AluSx SINE Alu -1 311 41 312 314 51 17 chr4 31052239 31052357 -153236305 - MIR SINE MIR -23 239 118 382 335 79 29 chr4 31053737 31054055 -153234607 - L2 LINE L2 -196 3076 2742 209 369 41 16 chr4 31054084 31054206 -153234456 - L2 LINE L2 -655 2659 2535 344 273 63 42 chr4 31054275 31054418 -153234244 - MER5B DNA MER1_type -19 159 14 1152 304 54 25 chr4 31054440 31054923 -153233739 + L2 LINE L2 2146 2642 -672 1346 123 0 0 chr4 31054930 31055109 -153233553 - AluSg/x SINE Alu -15 297 119 245 358 20 13 chr4 31055366 31055517 -153233145 + L1MEd LINE L1 595 746 -5373 498 276 77 35 chr4 31055777 31056063 -153232599 + L1MEd LINE L1 958 1255 -4864 4492 28 1 1 chr4 31056447 31057210 -153231452 - L1P2 LINE L1 -570 5584 4822 * 7962 33 0 0 chr4 31057209 31058214 -153230448 + L1P LINE L1 4346 5350 -796 278 22 0 67 chr4 31058338 31058383 -153230279 + MADE1 DNA Mariner 2 43 -37 2082 114 0 4 chr4 31058394 31058675 -153229987 - AluSx SINE Alu -32 280 1 497 179 0 0 chr4 31058675 31058759 -153229903 - MLT1A1 LTR MaLR -281 84 1 320 196 0 0 chr4 31058939 31058995 -153229667 - L2 LINE L2 -4 3309 3254 32 57 0 0 chr4 31060286 31060339 -153228323 + AT_rich Low_complexity Low_complexity 1 53 0 534 272 0 0 chr4 31060918 31061080 -153227582 + (TATATG)n Simple_repeat Simple_repeat 6 167 0 301 333 0 0 chr4 31061086 31061176 -153227486 + L1MC4 LINE L1 6614 6703 -1339 46 67 0 33 chr4 31061234 31061289 -153227373 + AT_rich Low_complexity Low_complexity 1 56 -89 1855 135 14 35 chr4 31061289 31061577 -153227085 - AluSx SINE Alu -14 298 17 46 67 0 33 chr4 31061577 31061671 -153226991 + AT_rich Low_complexity Low_complexity 56 145 0 877 169 33 16 chr4 31061675 31061858 -153226804 - L1MB7 LINE L1 -29 6155 5970 335 149 15 0 chr4 31061865 31061932 -153226730 - Alu SINE Alu 0 302 235 253 191 0 0 chr4 31062473 31062520 -153226142 - L2 LINE L2 -1 3312 3266 234 163 0 0 chr4 31063841 31063884 -153224778 - MLT1G3 LTR MaLR -228 302 260 2226 214 14 40 chr4 31064067 31064586 -153224076 + MLT1D LTR MaLR 1 505 0 199 299 124 55 chr4 31064652 31064853 -153223809 - MIR SINE MIR -37 225 11 1247 281 54 20 chr4 31064905 31065346 -153223316 + LTR68 LTR ERV1 1 456 -284 2173 110 0 0 chr4 31065448 31065740 -153222922 + AluSp SINE Alu 21 312 -1 198 0 0 0 chr4 31066092 31066114 -153222548 + (A)n Simple_repeat Simple_repeat 1 22 0 2221 90 0 4 chr4 31066673 31066981 -153221681 + AluSq SINE Alu 5 311 0 323 193 0 0 chr4 31067039 31067096 -153221566 + MSTA LTR MaLR 321 377 -51 258 258 106 33 chr4 31067227 31067378 -153221284 - Charlie1 DNA MER1_type -297 2464 2303 285 75 0 0 chr4 31067537 31067577 -153221085 + (GA)n Simple_repeat Simple_repeat 1 40 0 350 280 34 34 chr4 31067615 31067733 -153220929 - L1ME3 LINE L1 -66 6096 5979 2786 186 59 9 chr4 31067736 31068263 -153220399 - MER68 LTR ERV1 0 562 10 345 230 72 86 chr4 31068268 31068312 -153220350 - L1ME3 LINE L1 -181 5981 5938 2259 94 10 3 chr4 31068312 31068609 -153220053 - AluSx SINE Alu -13 299 1 345 230 72 86 chr4 31068609 31068703 -153219959 - L1ME3 LINE L1 -224 5938 5845 468 285 159 14 chr4 31068814 31069028 -153219634 - MIR SINE MIR -3 259 15 1397 178 122 21 chr4 31069101 31069388 -153219274 + MLT1D LTR MaLR 3 318 -187 5274 129 1 9 chr4 31070098 31070896 -153217766 + L1PA14 LINE L1 5370 6161 0 2238 157 23 3 chr4 31070931 31071281 -153217381 - MLT1A1 LTR MaLR -8 357 1 911 147 0 0 chr4 31071452 31071581 -153217081 + THE1B LTR MaLR 85 213 -151 246 184 20 0 chr4 31071681 31071730 -153216932 - MER53 DNA DNA -137 52 3 236 333 120 40 chr4 31071731 31071881 -153216781 - MIR SINE MIR -78 184 23 2043 151 0 3 chr4 31072808 31073182 -153215480 + AluSq SINE Alu 1 373 0 467 206 50 35 chr4 31073233 31073374 -153215288 - L1ME4a LINE L1 0 6121 5979 406 249 103 47 chr4 31073407 31073620 -153215042 - L1ME4a LINE L1 -207 5914 5690 1392 169 122 21 chr4 31073868 31074147 -153214515 + AluJo SINE Alu 1 307 -5 262 150 0 0 chr4 31074440 31074480 -153214182 + MER53 DNA DNA 150 189 0 2207 90 3 30 chr4 31075708 31076009 -153212653 + AluSp SINE Alu 1 293 -20 418 324 125 18 chr4 31076012 31076339 -153212323 + L1M4 LINE L1 4414 4775 -1371 805 105 19 0 chr4 31076339 31076444 -153212218 + AluJb SINE Alu 195 301 -11 186 361 48 0 chr4 31076653 31076736 -153211926 - L2 LINE L2 -43 3229 3143 302 186 51 0 chr4 31076962 31077021 -153211641 - Charlie1a DNA MER1_type 0 1455 1394 3575 215 40 6 chr4 31077021 31077864 -153210798 + L1M4 LINE L1 4309 5180 -966 251 237 26 0 chr4 31077965 31078041 -153210621 + (CATATA)n Simple_repeat Simple_repeat 3 80 0 255 287 0 43 chr4 31078044 31078138 -153210524 - L1MC4 LINE L1 -1339 6703 6614 232 344 0 0 chr4 31078084 31078174 -153210488 + L1MC4 LINE L1 6614 6703 -1339 * 237 188 0 0 chr4 31078178 31078226 -153210436 - LTR66 LTR ERVL -171 439 392 * 4243 204 39 48 chr4 31078223 31078246 -153210416 - Charlie1a DNA MER1_type -1694 1067 1045 1756 171 3 19 chr4 31078246 31078555 -153210107 - AluJb SINE Alu -8 304 1 4243 204 39 48 chr4 31078555 31079130 -153209532 - Charlie1a DNA MER1_type -1716 1045 479 2236 77 0 11 chr4 31079130 31079417 -153209245 - AluSp SINE Alu -23 290 7 4243 204 39 48 chr4 31079417 31079882 -153208780 - Charlie1a DNA MER1_type -2282 479 12 2435 68 3 3 chr4 31079891 31080202 -153208460 - AluY SINE Alu 0 311 1 325 274 7 67 chr4 31080219 31080354 -153208308 + L2 LINE L2 3183 3309 -4 1472 146 54 44 chr4 31080945 31081240 -153207422 + AluJo SINE Alu 1 298 -14 244 135 0 0 chr4 31081969 31082006 -153206656 - L2 LINE L2 -16 3297 3261 922 188 17 153 chr4 31082174 31082526 -153206136 - LTR37A LTR ERV1 -12 414 111 689 238 92 0 chr4 31082927 31083091 -153205571 + MIR SINE MIR 81 259 -3 2237 93 10 0 chr4 31083236 31083526 -153205136 - AluSc SINE Alu -16 293 1 841 96 0 0 chr4 31083757 31083861 -153204801 - AluSg/x SINE Alu -16 293 190 252 135 0 0 chr4 31083892 31083929 -153204733 + MER21A LTR ERV1 162 198 -733 * 2478 180 102 118 chr4 31083905 31084698 -153203964 + MER21A LTR ERV1 131 910 -21 1165 336 43 12 chr4 31084745 31085334 -153203328 - L2 LINE L2 -312 3001 2392 712 144 0 0 chr4 31085340 31085437 -153203225 + FLAM_C SINE Alu 22 118 -25 583 212 15 17 chr4 31085451 31085801 -153202861 + GA-rich Low_complexity Low_complexity 1 349 0 186 43 0 0 chr4 31085806 31085829 -153202833 + (GGGA)n Simple_repeat Simple_repeat 2 24 0 2133 145 0 0 chr4 31086977 31087287 -153201375 - AluSg SINE Alu 0 310 1 2167 115 0 0 chr4 31087292 31087588 -153201074 - AluSx SINE Alu -16 296 1 25 51 0 0 chr4 31087597 31087636 -153201026 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr4 31087752 31087773 -153200889 + AT_rich Low_complexity Low_complexity 1 21 0 1724 145 13 46 chr4 31088203 31088507 -153200155 + AluJo SINE Alu 3 296 -16 651 284 97 1 chr4 31088575 31088789 -153199873 - MIR SINE MIR -26 236 2 225 293 13 27 chr4 31088789 31088864 -153199798 - L2 LINE L2 -44 3269 3196 24 32 0 0 chr4 31088864 31088895 -153199767 + AT_rich Low_complexity Low_complexity 1 31 0 274 247 129 0 chr4 31089016 31089109 -153199553 - L1ME LINE L1 -322 5799 5695 189 0 0 0 chr4 31089122 31089143 -153199519 + (T)n Simple_repeat Simple_repeat 1 21 0 201 135 81 0 chr4 31090006 31090043 -153198619 - L2 LINE L2 -1 3312 3273 1986 92 38 89 chr4 31090305 31090620 -153198042 - AluSx SINE Alu -13 299 1 306 50 0 0 chr4 31090755 31090795 -153197867 + (TG)n Simple_repeat Simple_repeat 2 41 0 1066 169 47 67 chr4 31091812 31092066 -153196596 - Tigger3(Golem) DNA MER2_type -2780 249 1 2303 98 0 7 chr4 31092438 31092743 -153195919 + AluSx SINE Alu 1 303 -9 1211 136 0 0 chr4 31092743 31092920 -153195742 + AluSg/x SINE Alu 134 310 -2 1568 165 90 97 chr4 31092922 31093376 -153195286 - MER31B LTR ERV1 -15 451 1 2251 110 0 3 chr4 31093570 31093871 -153194791 + AluSx SINE Alu 1 300 -12 2128 120 47 0 chr4 31094487 31094786 -153193876 + AluSq SINE Alu 1 313 0 207 0 0 0 chr4 31094902 31094925 -153193737 + (A)n Simple_repeat Simple_repeat 1 23 0 998 215 0 5 chr4 31094940 31095140 -153193522 + MIR SINE MIR 57 255 -7 351 78 0 0 chr4 31095857 31095908 -153192754 + (TG)n Simple_repeat Simple_repeat 1 51 0 1625 184 0 35 chr4 31097622 31097938 -153190724 + AluJo SINE Alu 1 305 -7 189 0 0 0 chr4 31097944 31097965 -153190697 + (TG)n Simple_repeat Simple_repeat 2 22 0 324 48 0 0 chr4 31097967 31098009 -153190653 + (GA)n Simple_repeat Simple_repeat 1 42 0 2298 82 14 0 chr4 31098336 31098630 -153190032 - AluSp SINE Alu -15 298 1 2256 156 22 27 chr4 31098630 31098873 -153189789 - L1MB4 LINE L1 -118 6062 5820 2186 123 3 3 chr4 31098873 31099175 -153189487 - AluSx SINE Alu -9 303 2 2256 156 22 27 chr4 31099175 31099341 -153189321 - L1MB4 LINE L1 -360 5820 5655 291 274 39 0 chr4 31099347 31099449 -153189213 - L1MC4a LINE L1 -1922 5886 5781 1917 134 23 10 chr4 31099898 31100197 -153188465 + AluSx SINE Alu 1 303 -9 1710 108 0 0 chr4 31100198 31100420 -153188242 + AluSg/x SINE Alu 89 310 -2 793 160 26 39 chr4 31100625 31100781 -153187881 - L1PB4 LINE L1 -1 6155 6002 1520 197 34 3 chr4 31100858 31101152 -153187510 + AluJb SINE Alu 1 303 -9 230 193 18 18 chr4 31101747 31101804 -153186858 + A-rich Low_complexity Low_complexity 3 59 0 2460 29 0 0 chr4 31101848 31102126 -153186536 - AluYa5 SINE Alu -4 307 30 1843 157 16 23 chr4 31102844 31103149 -153185513 - AluJo SINE Alu -4 308 6 183 354 0 31 chr4 31103368 31103464 -153185198 + L2 LINE L2 2791 2883 -431 1009 167 34 12 chr4 31103481 31103680 -153184982 + L1MA9 LINE L1 5592 5793 -519 2110 114 0 3 chr4 31103784 31104074 -153184588 + AluSx SINE Alu 1 289 -23 2913 168 12 8 chr4 31104079 31104591 -153184071 + L1MA9 LINE L1 5799 6312 0 2191 115 3 0 chr4 31104629 31104924 -153183738 + AluSx SINE Alu 1 296 -16 1600 161 67 30 chr4 31106158 31106457 -153182205 - AluJo SINE Alu -2 310 1 1395 210 40 0 chr4 31107074 31107406 -153181256 - AluSx SINE Alu 0 344 1 21 0 0 0 chr4 31107479 31107500 -153181162 + AT_rich Low_complexity Low_complexity 1 21 0 878 138 0 7 chr4 31107613 31107765 -153180897 + (TCCC)n Simple_repeat Simple_repeat 4 154 0 1365 61 0 0 chr4 31108553 31108733 -153179929 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 433 147 20 98 chr4 31109397 31109499 -153179163 - L1MB7 LINE L1 -20 6164 6071 439 273 29 14 chr4 31109515 31109654 -153179008 - L2 LINE L2 -19 3294 3154 2183 168 144 7 chr4 31109661 31110072 -153178590 + MLT1C LTR MaLR 1 467 0 597 171 21 50 chr4 31110195 31110335 -153178327 + MER21A LTR ERV1 8 143 -788 362 123 31 0 chr4 31110447 31110512 -153178150 + G-rich Low_complexity Low_complexity 5 71 0 711 105 24 0 chr4 31110518 31110642 -153178020 + GA-rich Low_complexity Low_complexity 4 130 0 230 287 157 0 chr4 31110656 31110771 -153177891 + MER5A DNA MER1_type 54 186 -3 478 164 86 86 chr4 31110847 31110987 -153177675 - LTR48 LTR ERV1 -3 784 645 1209 140 16 5 chr4 31111005 31111198 -153177464 + MER44D DNA MER2_type 8 472 -137 828 168 0 22 chr4 31111198 31111335 -153177327 - FLAM_A SINE Alu -8 134 1 807 159 29 7 chr4 31111335 31111473 -153177189 + MER44D DNA MER2_type 465 605 0 556 223 90 32 chr4 31111473 31111777 -153176885 - LTR48B LTR ERV1 -141 616 128 349 307 9 26 chr4 31111750 31111864 -153176798 - MER34 LTR ERV1 -430 112 1 * 1658 165 18 32 chr4 31112415 31112700 -153175962 + AluJo SINE Alu 1 281 -31 183 27 54 27 chr4 31112708 31112745 -153175917 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 593 264 120 57 chr4 31114106 31114405 -153174257 + L2 LINE L2 2996 3313 0 1479 198 3 23 chr4 31114476 31114784 -153173878 + AluJo SINE Alu 1 302 -10 1901 147 6 10 chr4 31114784 31115097 -153173565 + AluSx SINE Alu 1 312 0 434 242 21 0 chr4 31115230 31115325 -153173337 - MIR SINE MIR -108 154 58 274 352 0 0 chr4 31115417 31115532 -153173130 + MIR SINE MIR 41 155 -53 690 95 11 0 chr4 31115749 31115868 -153172794 - AluSc SINE Alu 0 305 186 417 316 91 34 chr4 31115978 31116246 -153172416 + L2 LINE L2 2766 3047 -266 1520 174 10 35 chr4 31116401 31116712 -153171950 - AluSx SINE Alu -9 303 1 2662 20 0 0 chr4 31116833 31117137 -153171525 + AluY SINE Alu 1 304 -7 2545 52 0 0 chr4 31117231 31117541 -153171121 + AluY SINE Alu 1 310 -1 407 274 85 26 chr4 31117548 31117701 -153170961 + MIR3 SINE MIR 47 208 0 357 276 122 32 chr4 31118487 31118658 -153170004 - MIR3 SINE MIR -62 146 6 334 327 50 0 chr4 31118801 31118902 -153169760 - MIR SINE MIR 0 262 157 450 237 64 32 chr4 31118902 31119058 -153169604 - MIR SINE MIR 0 262 102 2027 126 3 0 chr4 31119059 31119352 -153169310 + AluSp SINE Alu 2 295 -18 7161 136 20 10 chr4 31120272 31120493 -153168169 - HSMAR2 DNA Mariner 0 1302 1085 2044 100 4 4 chr4 31120493 31120808 -153167854 - AluSc SINE Alu 0 315 1 7161 136 20 10 chr4 31120808 31121707 -153166955 - HSMAR2 DNA Mariner -217 1085 170 1271 135 42 9 chr4 31122063 31122278 -153166384 - AluJo SINE Alu -4 308 87 808 206 56 6 chr4 31123018 31123198 -153165464 - MER53 DNA DNA 0 189 1 278 177 0 16 chr4 31123529 31123591 -153165071 + CT-rich Low_complexity Low_complexity 3 63 0 276 256 70 12 chr4 31124654 31124740 -153163922 + MIR SINE MIR 6 96 -166 444 274 30 42 chr4 31124753 31124921 -153163741 - MIR SINE MIR -1 261 96 1918 162 0 0 chr4 31124925 31125228 -153163434 + AluJb SINE Alu 1 303 -9 672 214 0 36 chr4 31125270 31125410 -153163252 + FLAM_C SINE Alu 2 136 -7 212 324 27 0 chr4 31125410 31125484 -153163178 - MIR SINE MIR -168 94 19 387 297 21 59 chr4 31125516 31125673 -153162989 - MIR SINE MIR -66 142 38 356 211 32 42 chr4 31125825 31125920 -153162742 + MER103 DNA DNA 67 160 -6 277 61 0 0 chr4 31126079 31126112 -153162550 - AluY SINE Alu -210 91 59 186 312 182 0 chr4 31126427 31126504 -153162158 - MIR SINE MIR 0 262 172 1907 199 111 11 chr4 31126535 31126978 -153161684 + MLT1F LTR MaLR 56 542 0 362 190 0 38 chr4 31126978 31127057 -153161605 - MIR SINE MIR -103 159 84 230 209 0 0 chr4 31127690 31127733 -153160929 - MIR SINE MIR -116 92 50 813 284 16 73 chr4 31127897 31128054 -153160608 - L2 LINE L2 -5 3308 3144 2189 78 4 0 chr4 31128054 31128369 -153160293 + AluSx SINE Alu 1 316 0 813 284 16 73 chr4 31128369 31128580 -153160082 - L2 LINE L2 -169 3144 2960 184 347 14 0 chr4 31130026 31130098 -153158564 + MIR SINE MIR 82 154 -108 368 289 102 16 chr4 31130165 31130293 -153158369 - MIR SINE MIR -55 207 69 221 139 0 0 chr4 31130351 31130387 -153158275 + MIR SINE MIR 226 261 -1 191 203 17 0 chr4 31130693 31130752 -153157910 + (TA)n Simple_repeat Simple_repeat 1 60 0 362 255 21 32 chr4 31130760 31130854 -153157808 - L1MC4 LINE L1 -1336 6706 6614 315 311 0 11 chr4 31130780 31130870 -153157792 + L1MC4 LINE L1 6615 6703 -1339 * 252 0 0 0 chr4 31130971 31130999 -153157663 + (T)n Simple_repeat Simple_repeat 1 28 0 1274 266 120 12 chr4 31131153 31132004 -153156658 - L2 LINE L2 -3 3310 2356 306 50 0 0 chr4 31132255 31132295 -153156367 + (CA)n Simple_repeat Simple_repeat 2 41 0 207 0 0 0 chr4 31132784 31132807 -153155855 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2305 63 7 3 chr4 31132862 31133162 -153155500 + AluY SINE Alu 2 302 -9 265 240 10 19 chr4 31133532 31133636 -153155026 + (CCCCG)n Simple_repeat Simple_repeat 1 103 0 206 311 40 0 chr4 31134582 31134656 -153154006 + L2 LINE L2 3195 3271 -1 244 252 0 37 chr4 31135295 31135455 -153153207 + (CGG)n Simple_repeat Simple_repeat 1 154 0 23 0 0 0 chr4 31136228 31136251 -153152411 + GC_rich Low_complexity Low_complexity 1 23 0 202 208 42 0 chr4 31136778 31136826 -153151836 + (TA)n Simple_repeat Simple_repeat 1 50 0 2407 53 0 0 chr4 31137452 31137753 -153150909 + AluY SINE Alu 1 301 -10 23 0 0 0 chr4 31137781 31137804 -153150858 + AT_rich Low_complexity Low_complexity 1 23 0 332 255 10 39 chr4 31138015 31138117 -153150545 + MIR SINE MIR 59 157 -105 503 271 0 23 chr4 31138304 31138433 -153150229 + L2 LINE L2 3188 3313 0 581 273 70 66 chr4 31138692 31138759 -153149903 + MIR SINE MIR 1 66 -196 2195 94 0 22 chr4 31138759 31139077 -153149585 + AluY SINE Alu 1 311 0 581 273 70 66 chr4 31139077 31139251 -153149411 + MIR SINE MIR 66 243 -19 282 292 62 22 chr4 31139302 31139410 -153149252 - MIR SINE MIR -82 126 15 204 238 0 0 chr4 31140225 31140267 -153148395 + (CAA)n Simple_repeat Simple_repeat 3 44 0 185 268 188 27 chr4 31140668 31140780 -153147882 - MIR3 SINE MIR -50 158 29 189 265 29 44 chr4 31140906 31140974 -153147688 - L2 LINE L2 -10 3262 3196 374 294 51 89 chr4 31141729 31141915 -153146747 + L2 LINE L2 2550 2721 -593 1654 167 0 34 chr4 31141915 31142208 -153146454 - AluJb SINE Alu -29 283 1 374 294 51 89 chr4 31142208 31142337 -153146325 + L2 LINE L2 2721 2853 -461 1115 231 113 54 chr4 31142508 31142949 -153145713 + MLT1C LTR MaLR 1 467 0 353 338 78 22 chr4 31143986 31144354 -153144308 + L2 LINE L2 2638 3020 -252 412 249 333 34 chr4 31144710 31144887 -153143775 - MIR SINE MIR -1 261 32 261 283 66 66 chr4 31144956 31145062 -153143600 + L2 LINE L2 3075 3180 -92 1384 156 9 4 chr4 31145398 31145623 -153143039 + AluJo SINE Alu 1 226 -86 427 173 74 0 chr4 31145632 31145713 -153142949 + L1MB8 LINE L1 5739 5825 -353 422 138 0 0 chr4 31145713 31145771 -153142891 + AluJo SINE Alu 228 285 -27 2256 97 0 3 chr4 31145894 31146203 -153142459 - AluSg SINE Alu -2 308 1 214 29 57 0 chr4 31146301 31146336 -153142326 + (GA)n Simple_repeat Simple_repeat 2 38 0 2187 204 5 7 chr4 31146384 31146815 -153141847 + L1MB8 LINE L1 5638 6067 -111 208 333 208 24 chr4 31146818 31146986 -153141676 - MIR SINE MIR -61 201 3 205 62 0 31 chr4 31147607 31147639 -153141023 + MIR SINE MIR 124 154 -108 270 160 0 0 chr4 31148107 31148157 -153140505 + G-rich Low_complexity Low_complexity 5 54 0 209 351 0 43 chr4 31148186 31148280 -153140382 - MIR SINE MIR -13 249 160 2350 61 13 16 chr4 31148280 31148593 -153140069 + AluSp SINE Alu 1 312 -1 476 221 179 7 chr4 31148608 31148753 -153139909 + L2 LINE L2 3131 3300 -13 855 266 60 20 chr4 31148820 31149072 -153139590 - MIR SINE MIR 0 262 1 1008 121 33 22 chr4 31149201 31149383 -153139279 - L1MB3 LINE L1 -1 6182 5999 1490 106 46 0 chr4 31149465 31149682 -153138980 + AluY SINE Alu 1 227 -84 721 155 0 45 chr4 31150024 31150179 -153138483 + L1MB8 LINE L1 6029 6176 -2 439 221 145 23 chr4 31150555 31150686 -153137976 - MIR SINE MIR -74 188 42 1487 186 41 14 chr4 31150688 31150983 -153137679 + AluJb SINE Alu 1 303 -9 249 338 35 95 chr4 31151052 31151283 -153137379 + L2 LINE L2 3006 3222 -50 210 37 0 0 chr4 31151306 31151333 -153137329 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 951 291 85 6 chr4 31152208 31152548 -153136114 + L2 LINE L2 1888 2254 -1060 424 196 28 56 chr4 31152553 31152660 -153136002 - L2 LINE L2 -777 2537 2434 368 191 43 21 chr4 31152674 31152768 -153135894 + L2 LINE L2 2291 2386 -928 1681 154 13 31 chr4 31152874 31153192 -153135470 + AluSx SINE Alu 1 312 0 503 141 11 0 chr4 31153192 31153284 -153135378 + GA-rich Low_complexity Low_complexity 4 96 0 902 316 73 30 chr4 31153294 31153885 -153134777 + L2 LINE L2 2552 3313 0 246 341 11 11 chr4 31154096 31154187 -153134475 + MIR SINE MIR 33 123 -85 1846 118 14 21 chr4 31154212 31154492 -153134170 - AluJb SINE Alu -34 278 1 407 289 102 0 chr4 31154946 31155074 -153133588 + MIR SINE MIR 112 252 -10 329 132 264 28 chr4 31155738 31155835 -153132827 + AluJo/FLAM SINE Alu 2 127 -175 2034 149 0 0 chr4 31155835 31156137 -153132525 - AluSx SINE Alu -10 302 1 402 309 7 22 chr4 31157825 31157964 -153130698 - L2 LINE L2 -13 3300 3164 291 355 90 19 chr4 31158190 31158345 -153130317 - MIR SINE MIR -48 214 49 797 262 9 36 chr4 31158349 31158570 -153130092 - MIR SINE MIR 0 262 48 192 274 85 92 chr4 31159026 31159179 -153129483 + L2 LINE L2 3121 3272 0 318 236 79 63 chr4 31159295 31159422 -153129240 + MER63 DNA MER1_type 6 760 -76 253 306 14 0 chr4 31159420 31159492 -153129170 + MER63 DNA MER1_type 984 1056 -5 * 384 169 0 0 chr4 31159780 31159857 -153128805 + CT-rich Low_complexity Low_complexity 2 78 0 1300 112 6 0 chr4 31159958 31160136 -153128526 - AluSc SINE Alu -130 179 1 1934 135 10 0 chr4 31160657 31160954 -153127708 - AluSx SINE Alu -8 304 5 2281 98 0 0 chr4 31161051 31161347 -153127315 - AluSg SINE Alu -14 296 1 364 194 0 0 chr4 31161531 31161603 -153127059 - MLT1F1 LTR MaLR -4 563 492 234 0 0 0 chr4 31161872 31161898 -153126764 + (A)n Simple_repeat Simple_repeat 1 26 0 877 130 80 31 chr4 31162100 31162262 -153126400 + AluJo SINE Alu 79 248 -64 349 175 0 16 chr4 31162262 31162325 -153126337 + AluJo SINE Alu 225 286 -16 1532 176 26 7 chr4 31162415 31162721 -153125941 + AluJo SINE Alu 1 312 0 1243 132 5 5 chr4 31163007 31163212 -153125450 - AluSg/x SINE Alu -13 299 95 694 120 8 32 chr4 31163313 31163438 -153125224 - HSMAR2 DNA Mariner -1173 129 8 191 275 0 0 chr4 31164344 31164384 -153124278 - MIR SINE MIR -109 153 114 1954 159 3 13 chr4 31165202 31165517 -153123145 - AluJb SINE Alu 0 312 1 739 210 0 0 chr4 31165522 31165646 -153123016 - FLAM_A SINE Alu -9 124 1 463 347 88 37 chr4 31165755 31166302 -153122360 + L2 LINE L2 2009 2583 -731 577 230 34 27 chr4 31166599 31166747 -153121915 - MLT1J1 LTR MaLR -297 149 1 226 246 0 18 chr4 31166778 31166835 -153121827 + L2 LINE L2 3160 3215 -98 2169 120 0 0 chr4 31166843 31167142 -153121520 - AluSg SINE Alu -11 299 1 2157 103 3 29 chr4 31167142 31167454 -153121208 - AluSx SINE Alu -7 305 2 231 164 58 67 chr4 31167513 31167617 -153121045 + (TTAA)n Simple_repeat Simple_repeat 3 105 0 267 323 121 0 chr4 31167628 31167727 -153120935 + L2 LINE L2 2594 2704 -610 3099 179 116 26 chr4 31168103 31168519 -153120143 - LTR48 LTR ERV1 0 787 410 1972 127 48 0 chr4 31168519 31168810 -153119852 + AluSx SINE Alu 1 305 -7 3099 179 116 26 chr4 31168810 31169029 -153119633 - LTR48 LTR ERV1 -377 410 212 1994 122 21 3 chr4 31169029 31169315 -153119347 + AluSg SINE Alu 1 291 -19 3099 179 116 26 chr4 31169315 31169400 -153119262 - LTR48 LTR ERV1 -575 212 1 1117 195 49 95 chr4 31169546 31169935 -153118727 - MER39 LTR ERV1 -66 641 271 305 241 56 19 chr4 31169911 31170019 -153118643 - LTR29 LTR ERV1 -507 115 4 * 228 260 41 0 chr4 31170804 31170877 -153117785 + LTR66 LTR ERVL 369 444 -166 2198 96 14 0 chr4 31170879 31171180 -153117482 - AluSx SINE Alu 0 305 1 2104 114 0 0 chr4 31172480 31172827 -153115835 - AluSx SINE Alu 0 348 2 237 277 143 18 chr4 31172885 31172997 -153115665 + L2 LINE L2 3138 3263 -9 1813 149 4 7 chr4 31173272 31173553 -153115109 + AluSx SINE Alu 1 280 -32 1387 80 0 6 chr4 31173693 31173868 -153114794 + L1PA11 LINE L1 6000 6173 -1 2169 129 0 13 chr4 31173908 31174218 -153114444 + AluSx SINE Alu 5 310 -2 27 0 0 0 chr4 31174218 31174245 -153114417 + AT_rich Low_complexity Low_complexity 1 27 0 1051 105 0 0 chr4 31174251 31174384 -153114278 + AluSq/x SINE Alu 1 133 -180 2410 84 0 0 chr4 31174388 31174685 -153113977 + AluSq SINE Alu 1 297 -16 918 216 26 56 chr4 31175477 31175746 -153112916 + MIR SINE MIR 2 262 0 309 115 19 0 chr4 31175835 31175887 -153112775 - L1M4 LINE L1 -441 5743 5691 1854 174 0 3 chr4 31175896 31176194 -153112468 - AluJb SINE Alu -15 297 1 230 313 0 73 chr4 31176230 31176326 -153112336 + MIR SINE MIR 5 93 -169 407 251 147 43 chr4 31176355 31176518 -153112144 - MIR SINE MIR -81 181 2 233 200 0 0 chr4 31177704 31177749 -153110913 + (TG)n Simple_repeat Simple_repeat 2 46 0 478 256 194 14 chr4 31178629 31178840 -153109822 - MIR SINE MIR 0 262 14 207 206 79 48 chr4 31179517 31179580 -153109082 + MIR3 SINE MIR 115 179 -29 1556 205 0 33 chr4 31179611 31179918 -153108744 - AluJo SINE Alu -15 297 1 2215 125 6 3 chr4 31179924 31180235 -153108427 - AluSx SINE Alu 0 312 1 2869 149 46 8 chr4 31180315 31180812 -153107850 - L1MC2 LINE L1 0 6344 5829 191 308 19 0 chr4 31181339 31181391 -153107271 - L2 LINE L2 -3 3269 3217 855 104 0 0 chr4 31181443 31181558 -153107104 + AluSx SINE Alu 1 115 -198 773 47 0 28 chr4 31181566 31181673 -153106989 + MER11A LTR ERVK 1163 1266 0 1367 111 0 32 chr4 31181673 31181863 -153106799 + AluSx SINE Alu 109 292 -20 589 213 124 45 chr4 31182023 31182225 -153106437 - MIR SINE MIR -3 259 42 288 329 126 35 chr4 31182477 31182708 -153105954 + L2 LINE L2 2840 3091 -181 2360 90 0 3 chr4 31182924 31183225 -153105437 - AluSg SINE Alu -10 300 1 204 179 0 0 chr4 31183360 31183399 -153105263 + (TTCA)n Simple_repeat Simple_repeat 4 42 0 261 0 0 0 chr4 31183440 31183469 -153105193 + (TA)n Simple_repeat Simple_repeat 1 29 0 530 208 0 0 chr4 31183476 31183582 -153105080 - L1MA4 LINE L1 -16 6284 6179 2348 94 0 3 chr4 31183582 31183891 -153104771 - AluSx SINE Alu -4 308 1 555 198 45 0 chr4 31184259 31184370 -153104292 - L1MA4 LINE L1 -113 6187 6072 272 218 18 82 chr4 31185317 31185427 -153103235 + MIR SINE MIR 77 179 -83 287 24 0 24 chr4 31185693 31185734 -153102928 + (TG)n Simple_repeat Simple_repeat 1 40 0 2056 141 7 0 chr4 31185832 31186136 -153102526 - AluSx SINE Alu -6 306 1 324 348 124 11 chr4 31186432 31186699 -153101963 + L2 LINE L2 2460 2756 -558 569 248 94 35 chr4 31186768 31186970 -153101692 + MIR SINE MIR 48 261 -1 249 292 0 71 chr4 31187885 31187998 -153100664 + MIR SINE MIR 92 196 -66 216 0 0 0 chr4 31188850 31188874 -153099788 + (T)n Simple_repeat Simple_repeat 1 24 0 920 176 0 0 chr4 31189012 31189160 -153099502 + FRAM SINE Alu 8 155 -21 21 36 0 0 chr4 31189601 31189629 -153099033 + AT_rich Low_complexity Low_complexity 1 28 0 1167 150 25 101 chr4 31189945 31190231 -153098431 - AluJo SINE Alu -23 289 26 2143 110 13 0 chr4 31190298 31190598 -153098064 - AluSp SINE Alu -8 305 2 273 254 103 55 chr4 31190800 31190919 -153097743 + MIR SINE MIR 84 215 -47 2586 50 0 0 chr4 31190919 31191219 -153097443 + AluY SINE Alu 1 300 -11 273 254 103 55 chr4 31191219 31191264 -153097398 + MIR SINE MIR 215 256 -6 210 315 0 63 chr4 31192259 31192370 -153096292 - MIR3 SINE MIR -6 202 99 1392 199 63 0 chr4 31192419 31192690 -153095972 - AluJb SINE Alu -20 292 5 1637 187 14 7 chr4 31193961 31194255 -153094407 - AluJo SINE Alu -16 296 1 1101 187 153 0 chr4 31194341 31194544 -153094118 - MER8 DNA MER2_type -3 236 3 26 64 0 0 chr4 31194821 31194868 -153093794 + AT_rich Low_complexity Low_complexity 1 47 0 653 244 0 8 chr4 31194868 31194995 -153093667 - FLAM_A SINE Alu -7 126 1 1606 171 84 0 chr4 31194999 31195273 -153093389 - AluJb SINE Alu -15 297 1 2117 127 7 3 chr4 31195349 31195649 -153093013 - AluSx SINE Alu -11 301 1 329 285 113 26 chr4 31195741 31195892 -153092770 + MIR SINE MIR 81 244 -18 2310 88 3 7 chr4 31196479 31196787 -153091875 - AluSc SINE Alu -2 307 1 2238 91 0 13 chr4 31196922 31197229 -153091433 - AluY SINE Alu -7 304 2 274 208 0 0 chr4 31197660 31197708 -153090954 + FRAM/FAM SINE Alu 20 67 -108 1123 166 128 34 chr4 31197718 31197792 -153090870 + AluJo SINE Alu 42 108 -204 288 0 0 0 chr4 31197792 31197824 -153090838 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 1123 166 128 34 chr4 31197824 31197984 -153090678 + AluJo SINE Alu 108 298 -14 1835 113 46 30 chr4 31198281 31198583 -153090079 - AluSx SINE Alu -5 307 1 1235 180 0 9 chr4 31198996 31199213 -153089449 - AluJo SINE Alu -12 300 86 2470 88 0 0 chr4 31199458 31199765 -153088897 - AluSc SINE Alu -2 307 1 2131 107 0 0 chr4 31199889 31200169 -153088493 - AluSg1 SINE Alu -14 295 16 1227 155 50 5 chr4 31200213 31200432 -153088230 - AluJb SINE Alu -83 229 1 1055 287 118 20 chr4 31200733 31201189 -153087473 + Charlie2a DNA MER1_type 181 681 -2181 260 196 20 0 chr4 31201200 31201251 -153087411 + MIR SINE MIR 211 262 0 640 195 205 68 chr4 31201388 31201616 -153087046 + Charlie2a DNA MER1_type 693 888 -1974 2163 135 0 0 chr4 31201616 31201919 -153086743 - AluSx SINE Alu -9 303 1 640 195 205 68 chr4 31201919 31202075 -153086587 + Charlie2a DNA MER1_type 888 1130 -1732 824 208 19 0 chr4 31202078 31202237 -153086425 - AluJo SINE Alu -30 282 121 2579 206 147 6 chr4 31202267 31203059 -153085603 + Charlie2a DNA MER1_type 1195 2097 -765 240 35 0 0 chr4 31203060 31203089 -153085573 + (TG)n Simple_repeat Simple_repeat 1 29 0 974 158 0 0 chr4 31203089 31203235 -153085427 - AluSg/x SINE Alu -33 279 134 2183 125 3 10 chr4 31203235 31203546 -153085116 - AluSg SINE Alu 0 310 2 373 302 148 45 chr4 31203546 31203604 -153085058 + L1MC/D LINE L1 5515 5566 -2242 2452 138 97 3 chr4 31203604 31203995 -153084667 - MSTA LTR MaLR 0 428 1 373 302 148 45 chr4 31203995 31204138 -153084524 + L1MC/D LINE L1 5566 5737 -2071 1276 181 0 0 chr4 31204553 31204774 -153083888 - AluSq SINE Alu -8 305 85 926 137 0 0 chr4 31204774 31204905 -153083757 - AluY SINE Alu -62 249 119 565 247 53 7 chr4 31205029 31205179 -153083483 + MIR SINE MIR 74 230 -32 2304 96 0 7 chr4 31205293 31205596 -153083066 + AluSx SINE Alu 1 301 -11 398 255 235 0 chr4 31206676 31206825 -153081837 + MIR SINE MIR 66 249 -13 245 272 68 19 chr4 31206827 31206930 -153081732 + MIR SINE MIR 90 197 -65 1775 133 65 4 chr4 31206949 31207228 -153081434 + AluJo SINE Alu 5 300 -12 22 35 0 0 chr4 31207739 31207768 -153080894 + AT_rich Low_complexity Low_complexity 1 29 0 2358 65 0 0 chr4 31207974 31208267 -153080395 - AluY SINE Alu -18 293 1 244 232 139 46 chr4 31209014 31209165 -153079497 - MIR SINE MIR -28 234 70 27 0 0 0 chr4 31209208 31209235 -153079427 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr4 31209273 31209301 -153079361 + AT_rich Low_complexity Low_complexity 1 28 0 45 19 0 0 chr4 31209350 31209402 -153079260 + AT_rich Low_complexity Low_complexity 1 52 0 22 0 0 0 chr4 31209488 31209510 -153079152 + AT_rich Low_complexity Low_complexity 1 22 0 2139 100 7 0 chr4 31209513 31209832 -153078830 + AluY SINE Alu 1 321 0 5750 185 53 34 chr4 31209845 31210188 -153078474 + L1MB8 LINE L1 3686 4021 -2157 2205 121 0 19 chr4 31210188 31210503 -153078159 + AluSq SINE Alu 3 311 -2 5750 185 53 34 chr4 31210503 31212402 -153076260 + L1MB8 LINE L1 4021 6174 -4 881 87 0 9 chr4 31212485 31212600 -153076062 - FLAM_C SINE Alu -25 118 5 731 197 162 0 chr4 31212798 31212940 -153075722 - FRAM SINE Alu -1 165 1 216 119 34 34 chr4 31212951 31213010 -153075652 + (TA)n Simple_repeat Simple_repeat 2 60 0 389 66 16 0 chr4 31213020 31213081 -153075581 + (TTTA)n Simple_repeat Simple_repeat 2 63 0 1763 179 0 0 chr4 31213084 31213364 -153075298 - AluSx SINE Alu -32 280 1 338 287 114 34 chr4 31213434 31213671 -153074991 - MIR SINE MIR 0 262 7 2641 50 0 0 chr4 31214353 31214655 -153074007 - AluY SINE Alu -9 302 1 274 163 20 0 chr4 31214621 31214670 -153073992 - AluSg/x SINE Alu -133 169 120 309 252 158 0 chr4 31214761 31214888 -153073774 + MIR SINE MIR 89 235 -27 290 259 119 75 chr4 31215154 31215355 -153073307 - L2 LINE L2 0 3313 3104 277 290 37 19 chr4 31215736 31215843 -153072819 - MIR SINE MIR -88 174 66 2184 81 26 39 chr4 31215981 31216289 -153072373 + AluSq SINE Alu 1 304 -9 207 200 0 0 chr4 31218113 31218158 -153070504 + T-rich Low_complexity Low_complexity 1 45 0 192 152 0 0 chr4 31218232 31218265 -153070397 + T-rich Low_complexity Low_complexity 1 33 0 2030 120 43 3 chr4 31218713 31219013 -153069649 - AluSx SINE Alu 0 312 1 21 0 0 0 chr4 31219086 31219107 -153069555 + AT_rich Low_complexity Low_complexity 1 21 0 355 305 142 16 chr4 31219227 31219417 -153069245 + MIR SINE MIR 48 261 -1 2235 234 71 10 chr4 31219494 31220012 -153068650 + MLT1F1 LTR MaLR 14 563 -4 332 297 97 32 chr4 31220122 31220277 -153068385 - MIR3 SINE MIR -2 206 42 374 181 30 30 chr4 31220297 31220463 -153068199 + CT-rich Low_complexity Low_complexity 2 167 0 557 69 97 0 chr4 31220600 31220672 -153067990 - AluSg SINE Alu -230 80 2 1184 159 51 5 chr4 31220709 31220923 -153067739 - AluJb SINE Alu -83 229 6 268 325 13 0 chr4 31221081 31221158 -153067504 - MIR SINE MIR -103 105 28 2205 113 0 0 chr4 31221172 31221464 -153067198 + AluSx SINE Alu 14 305 -7 2183 104 3 0 chr4 31221553 31221840 -153066822 + AluSx SINE Alu 9 296 -16 421 305 170 9 chr4 31221846 31222361 -153066301 - L2 LINE L2 0 3313 2591 2427 87 0 3 chr4 31222385 31222695 -153065967 + AluSc SINE Alu 1 309 0 2042 251 169 20 chr4 31222706 31223140 -153065522 - L2 LINE L2 -910 2404 2036 1959 136 4 0 chr4 31223140 31223477 -153065185 + AluSx SINE Alu 1 338 0 2042 251 169 20 chr4 31223477 31223809 -153064853 - L2 LINE L2 -1278 2036 1508 1129 200 0 5 chr4 31223809 31223999 -153064663 - MER5A DNA MER1_type 0 189 1 2042 251 169 20 chr4 31223999 31224039 -153064623 - L2 LINE L2 -1806 1508 1475 235 324 27 0 chr4 31224177 31224251 -153064411 - MIR SINE MIR -103 105 30 1812 145 3 78 chr4 31225345 31225544 -153063118 - AluSx SINE Alu -5 307 141 2285 109 0 3 chr4 31225544 31225857 -153062805 - AluSq SINE Alu -1 312 1 1812 145 3 78 chr4 31225857 31225989 -153062673 - AluSx SINE Alu -171 141 1 2492 56 0 3 chr4 31226038 31226341 -153062321 - AluY SINE Alu -9 302 1 201 202 28 138 chr4 31226481 31226590 -153062072 - L2 LINE L2 -2793 521 425 23 54 0 0 chr4 31226776 31226813 -153061849 + AT_rich Low_complexity Low_complexity 1 37 0 3469 131 86 31 chr4 31227906 31228486 -153060176 - LTR9 LTR ERV1 0 612 1 2476 83 0 10 chr4 31228512 31228826 -153059836 + AluSx SINE Alu 1 311 -1 555 294 216 26 chr4 31228909 31229566 -153059096 - L2 LINE L2 -906 2408 1627 2294 108 3 9 chr4 31229754 31230069 -153058593 - AluSq SINE Alu 0 313 1 300 211 205 39 chr4 31230302 31230458 -153058204 - Charlie7 DNA MER1_type -5 2607 2426 1743 192 0 10 chr4 31230499 31230812 -153057850 - AluJo SINE Alu -2 310 1 1551 155 0 23 chr4 31230914 31231179 -153057483 - AluJo SINE Alu -53 259 1 426 199 20 73 chr4 31231195 31231346 -153057316 - Charlie7 DNA MER1_type -263 2349 2207 1293 244 133 20 chr4 31231367 31231817 -153056845 - Charlie7 DNA MER1_type -881 1731 1231 341 235 59 29 chr4 31231826 31231928 -153056734 + L2 LINE L2 3203 3307 -6 1203 247 88 38 chr4 31231928 31232373 -153056289 - Charlie7 DNA MER1_type -1381 1231 765 242 276 86 26 chr4 31232408 31232524 -153056138 - L2 LINE L2 -280 3033 2911 * 475 265 17 0 chr4 31232510 31232627 -153056035 - L2 LINE L2 -799 2515 2397 499 90 290 10 chr4 31232764 31232864 -153055798 + MER85 DNA T2_type 1 128 -11 21 0 0 0 chr4 31232875 31232896 -153055766 + AT_rich Low_complexity Low_complexity 1 21 0 1495 165 77 0 chr4 31233229 31233489 -153055173 - AluJb SINE Alu -32 280 1 1985 185 51 11 chr4 31233950 31234301 -153054361 - MLT1A1 LTR MaLR 0 365 1 804 135 0 5 chr4 31234327 31234529 -153054133 + AluSx SINE Alu 2 300 -12 471 279 76 6 chr4 31235178 31235350 -153053312 + MIR SINE MIR 32 215 -47 2188 99 7 16 chr4 31235415 31235719 -153052943 - AluSx SINE Alu -11 301 1 2530 51 0 6 chr4 31235725 31236038 -153052624 - AluY SINE Alu 0 311 1 1900 143 17 3 chr4 31236253 31236553 -153052109 - AluSx SINE Alu -8 304 1 596 194 42 141 chr4 31236863 31237054 -153051608 - AluJb SINE Alu -23 289 118 1300 181 92 8 chr4 31237181 31237441 -153051221 + AluJo SINE Alu 1 282 -30 518 279 111 17 chr4 31238372 31238679 -153049983 - L1MC4a LINE L1 -323 5798 5573 2487 145 54 2 chr4 31239358 31239785 -153048877 - L1MB3 LINE L1 -1 6182 5734 342 0 0 0 chr4 31239824 31239862 -153048800 + (TG)n Simple_repeat Simple_repeat 2 39 0 710 125 17 50 chr4 31290097 31290242 -152998420 + FLAM_C SINE Alu 6 146 0 656 175 0 45 chr4 31290788 31290942 -152997720 + AluSc SINE Alu 1 147 -162 7876 191 35 11 chr4 31291051 31291148 -152997514 + L1 LINE L1 2416 2509 -3637 2086 108 3 51 chr4 31291148 31291464 -152997198 + AluSp SINE Alu 1 301 -12 204 40 0 0 chr4 31291464 31291489 -152997173 + (TA)n Simple_repeat Simple_repeat 2 26 0 7876 191 35 11 chr4 31291489 31293138 -152995524 + L1 LINE L1 2508 4206 -1940 231 36 0 0 chr4 31293142 31293170 -152995492 + (CCTG)n Simple_repeat Simple_repeat 2 29 0 411 83 0 28 chr4 31293172 31293244 -152995418 + (TC)n Simple_repeat Simple_repeat 2 71 0 548 139 12 0 chr4 31293244 31293330 -152995332 - AluSx SINE Alu -34 275 189 909 143 0 34 chr4 31293330 31293477 -152995185 - AluSx SINE Alu -171 142 1 3859 187 73 50 chr4 31293478 31294620 -152994042 + L1 LINE L1 4199 5366 -780 25 31 0 0 chr4 31294763 31294795 -152993867 + AT_rich Low_complexity Low_complexity 1 32 0 4420 235 100 26 chr4 31294955 31295880 -152992782 + L1ME1 LINE L1 3544 4400 -1944 1740 182 0 7 chr4 31295880 31296171 -152992491 + AluJb SINE Alu 1 289 -23 4420 235 100 26 chr4 31296171 31296920 -152991742 + L1ME1 LINE L1 4400 5441 -903 1382 184 164 10 chr4 31296920 31297224 -152991438 - MLT1A1 LTR MaLR 0 365 15 2175 237 49 24 chr4 31297295 31297932 -152990730 + L1ME1 LINE L1 5509 6161 -5 243 67 0 0 chr4 31298023 31298089 -152990573 - AluSq SINE Alu 0 316 251 1221 110 6 0 chr4 31298090 31298254 -152990408 - AluSq SINE Alu -148 165 1 1894 163 0 0 chr4 31298481 31298782 -152989880 - AluSx SINE Alu -11 301 1 2392 67 0 7 chr4 31299133 31299433 -152989229 - AluY SINE Alu -13 298 1 193 308 0 64 chr4 31299916 31299994 -152988668 - L3 LINE CR1 -75 1502 1430 1498 212 27 0 chr4 31300280 31300573 -152988089 + AluJo SINE Alu 1 301 -11 419 211 22 0 chr4 31300607 31300697 -152987965 + MSTB1 LTR MaLR 1 92 -340 * 704 175 147 0 chr4 31300692 31300869 -152987793 + MSTB1 LTR MaLR 193 395 -37 669 226 42 12 chr4 31302629 31302734 -152985928 - MER58C DNA MER1_type -2205 215 102 2275 102 0 0 chr4 31302734 31303037 -152985625 - AluY SINE Alu -7 304 2 669 226 42 12 chr4 31303037 31303099 -152985563 - MER58C DNA MER1_type -2318 102 43 216 0 0 0 chr4 31303176 31303200 -152985462 + (TG)n Simple_repeat Simple_repeat 1 24 0 2083 130 0 0 chr4 31303725 31304017 -152984645 - AluSg SINE Alu -18 292 1 1943 113 46 0 chr4 31304790 31305072 -152983590 - AluSx SINE Alu -5 307 13 24 53 0 0 chr4 31305242 31305280 -152983382 + AT_rich Low_complexity Low_complexity 1 38 0 810 230 22 11 chr4 31305373 31305551 -152983111 + MER20 DNA MER1_type 39 218 -1 202 194 0 0 chr4 31305974 31306010 -152982652 + MIR SINE MIR 217 252 -10 198 252 0 0 chr4 31306304 31306348 -152982314 - MIR SINE MIR -61 147 110 367 217 298 0 chr4 31306433 31306594 -152982068 + MIR SINE MIR 37 245 -17 2294 106 3 0 chr4 31306981 31307293 -152981369 - AluSp SINE Alu 0 313 1 370 350 38 6 chr4 31307847 31308007 -152980655 + L2 LINE L2 2178 2342 -972 6063 86 37 53 chr4 31308487 31309478 -152979184 - L1PA14 LINE L1 -1 6160 5162 402 228 26 44 chr4 31309702 31309816 -152978846 + MIR SINE MIR 137 248 -14 373 302 25 31 chr4 31310197 31310356 -152978306 - MIR SINE MIR -49 213 56 29 0 0 0 chr4 31310693 31310722 -152977940 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 31311170 31311191 -152977471 + AT_rich Low_complexity Low_complexity 1 21 0 2175 152 24 34 chr4 31311566 31312101 -152976561 - LTR10E LTR ERV1 -43 590 1 21 0 0 0 chr4 31312545 31312566 -152976096 + AT_rich Low_complexity Low_complexity 1 21 0 1788 133 91 0 chr4 31312989 31313274 -152975388 - AluJb SINE Alu -1 311 1 422 331 36 57 chr4 31313692 31313940 -152974722 - MIR SINE MIR -16 246 4 568 182 15 38 chr4 31314390 31314522 -152974140 + FLAM_C SINE Alu 1 129 -4 2393 92 0 0 chr4 31314600 31314903 -152973759 - AluSg SINE Alu -7 303 1 876 126 0 47 chr4 31316234 31316362 -152972300 + FLAM_C SINE Alu 1 121 -12 217 0 0 0 chr4 31316362 31316386 -152972276 + (TAAA)n Simple_repeat Simple_repeat 1 172 0 2519 49 0 26 chr4 31316931 31317237 -152971425 + AluY SINE Alu 1 298 -13 812 170 195 20 chr4 31317286 31317362 -152971300 + MER46A DNA MER2_type 2 63 -2668 1942 138 4 0 chr4 31317362 31317637 -152971025 - AluSx SINE Alu -36 276 1 812 170 195 20 chr4 31317637 31317760 -152970902 + MER46A DNA MER2_type 63 236 0 1091 244 123 71 chr4 31318197 31318677 -152969985 + L2 LINE L2 2809 3313 0 440 197 76 23 chr4 31318938 31319070 -152969592 + Charlie8 DNA MER1_type 57 195 -2222 342 321 79 0 chr4 31319116 31319281 -152969381 + Charlie8 DNA MER1_type 295 472 -1945 1804 168 10 0 chr4 31319282 31319574 -152969088 - AluJb SINE Alu -17 295 1 1235 200 122 15 chr4 31321365 31321635 -152967027 - AluJo SINE Alu -13 299 1 21 36 0 0 chr4 31322638 31322666 -152965996 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr4 31323082 31323117 -152965545 + AT_rich Low_complexity Low_complexity 1 35 0 1888 174 3 0 chr4 31324073 31324383 -152964279 - AluJb SINE Alu -1 311 1 335 271 49 84 chr4 31326006 31326231 -152962431 + MER20 DNA MER1_type 2 218 -1 2161 101 7 7 chr4 31326410 31326708 -152961954 - AluSx SINE Alu -14 298 1 671 204 137 152 chr4 31326744 31327650 -152961012 - L1MC5 LINE L1 -107 7854 6963 200 200 0 0 chr4 31327655 31327695 -152960967 + T-rich Low_complexity Low_complexity 1 40 0 210 91 0 0 chr4 31327703 31327736 -152960926 + (TTG)n Simple_repeat Simple_repeat 2 34 0 424 234 113 65 chr4 31327779 31328213 -152960449 - L1MC5 LINE L1 -33 7928 7342 1170 183 249 22 chr4 31328214 31328587 -152960075 - MER31B LTR ERV1 -1 660 5 1201 173 49 124 chr4 31330408 31330715 -152957947 + AluJb SINE Alu 1 284 -28 1849 263 222 27 chr4 31331638 31332966 -152955696 - L2 LINE L2 -84 3229 1636 306 242 141 0 chr4 31333141 31333240 -152955422 + MIR SINE MIR 33 145 -63 573 247 146 6 chr4 31333392 31333550 -152955112 + MER5A DNA MER1_type 10 189 0 312 27 0 0 chr4 31336289 31336326 -152952336 + (A)n Simple_repeat Simple_repeat 1 37 0 2142 119 0 7 chr4 31340475 31340770 -152947892 - AluSx SINE Alu -19 293 1 23 0 0 0 chr4 31341012 31341035 -152947627 + AT_rich Low_complexity Low_complexity 1 23 0 1143 106 182 20 chr4 31342190 31342388 -152946274 - MER30 DNA MER1_type 0 230 1 1976 141 3 16 chr4 31343677 31343983 -152944679 - AluSx SINE Alu -10 302 1 1760 175 0 16 chr4 31343983 31344286 -152944376 - AluJb SINE Alu -14 298 1 201 247 143 13 chr4 31344354 31344431 -152944231 - L2 LINE L2 -54 3259 3173 789 226 45 34 chr4 31345045 31345311 -152943351 - L2 LINE L2 -905 2409 2141 321 247 0 34 chr4 31345338 31345427 -152943235 - MER5A DNA MER1_type -95 94 9 560 230 164 0 chr4 31346710 31346862 -152941800 + L2 LINE L2 1966 2142 -1172 1255 263 109 90 chr4 31347059 31348170 -152940492 + L2 LINE L2 2158 3311 -2 334 268 104 56 chr4 31348396 31348665 -152939997 - HAL1 LINE L1 -223 2284 2003 368 275 33 0 chr4 31348707 31348798 -152939864 - L2 LINE L2 -25 3288 3195 572 271 77 51 chr4 31348972 31349363 -152939299 - HAL1 LINE L1 -1045 1462 1062 1642 133 12 0 chr4 31349426 31349675 -152938987 - MER67A LTR ERV1 -291 252 1 2856 209 102 16 chr4 31349767 31350613 -152938049 + L1PB3 LINE L1 2287 3206 -3656 995 114 0 0 chr4 31350635 31350767 -152937895 + AluSp SINE Alu 1 132 -181 5459 153 64 38 chr4 31350787 31352698 -152935964 + L1PB3 LINE L1 4915 6869 -1 550 298 93 25 chr4 31352993 31353194 -152935468 - MIR SINE MIR -36 226 17 2298 70 0 0 chr4 31353602 31353889 -152934773 + L1PA8 LINE L1 5866 6152 -20 717 179 123 0 chr4 31354011 31354173 -152934489 - MER5A DNA MER1_type -4 185 4 192 77 0 0 chr4 31354279 31354305 -152934357 + (A)n Simple_repeat Simple_repeat 1 26 0 296 306 48 0 chr4 31354405 31354529 -152934133 + MIR3 SINE MIR 78 207 -1 544 306 35 15 chr4 31354563 31354762 -152933900 - MIR SINE MIR 0 262 60 339 283 103 54 chr4 31354798 31355012 -152933650 + MIR SINE MIR 24 243 -19 1262 119 11 0 chr4 31356538 31356715 -152931947 - AluSg/x SINE Alu -1 311 133 668 212 29 0 chr4 31356784 31356921 -152931741 + L1ME1 LINE L1 5647 5787 -379 1426 226 122 28 chr4 31356922 31357356 -152931306 + MLT1D LTR MaLR 1 475 -30 1303 239 53 6 chr4 31357361 31357716 -152930946 + L1ME1 LINE L1 5787 6158 -8 927 338 65 23 chr4 31358424 31358990 -152929672 - ERVL LTR ERVL -846 4918 4329 2323 98 0 19 chr4 31359022 31359338 -152929324 - AluSq SINE Alu -1 312 3 735 265 67 52 chr4 31359375 31359703 -152928959 - LTR16C LTR ERVL -1 490 158 758 221 47 21 chr4 31360191 31360381 -152928281 + MIR SINE MIR 18 212 -50 694 269 175 44 chr4 31360388 31360753 -152927909 + L2 LINE L2 2897 3309 -4 228 135 0 0 chr4 31360863 31360900 -152927762 + (CATA)n Simple_repeat Simple_repeat 4 40 0 213 121 0 0 chr4 31361397 31361430 -152927232 + (CA)n Simple_repeat Simple_repeat 1 33 0 288 0 0 0 chr4 31361709 31361741 -152926921 + (T)n Simple_repeat Simple_repeat 1 32 0 2215 113 0 10 chr4 31361885 31362187 -152926475 - AluSx SINE Alu -13 299 1 198 260 260 0 chr4 31362501 31362597 -152926065 - L2 LINE L2 -3 3310 3190 2250 105 0 0 chr4 31363421 31363716 -152924946 + AluSg SINE Alu 1 295 -15 315 190 141 124 chr4 31363748 31363818 -152924844 - MER5A DNA MER1_type -53 136 62 1983 144 0 25 chr4 31363818 31364137 -152924525 - AluSx SINE Alu -1 311 1 315 190 141 124 chr4 31364137 31364187 -152924475 - MER5A DNA MER1_type -127 62 14 437 266 62 62 chr4 31364291 31364532 -152924130 - MIR SINE MIR -9 253 13 777 168 0 8 chr4 31364592 31364711 -152923951 + FLAM_C SINE Alu 11 128 -15 227 377 13 0 chr4 31364712 31364789 -152923873 - L2 LINE L2 -35 3278 3201 314 296 20 0 chr4 31364842 31364940 -152923722 + L2 LINE L2 2530 2629 -685 800 290 22 4 chr4 31365031 31365262 -152923400 + MIR SINE MIR 4 238 -24 478 278 75 28 chr4 31365287 31365542 -152923120 + L2 LINE L2 3047 3313 0 251 162 116 93 chr4 31366485 31366597 -152922065 - MLT1J2 LTR MaLR 0 450 285 413 147 0 27 chr4 31366707 31366782 -152921880 - MLT1H LTR MaLR -341 208 136 229 139 0 0 chr4 31368265 31368301 -152920361 - L2 LINE L2 -8 3305 3270 1368 103 0 0 chr4 31368399 31368584 -152920078 - AluSg/x SINE Alu -16 296 112 525 307 73 18 chr4 31368609 31368827 -152919835 - MIR SINE MIR -5 257 28 2278 98 0 0 chr4 31369274 31369580 -152919082 + AluSx SINE Alu 1 306 -6 501 295 108 6 chr4 31369615 31369781 -152918881 + MER5A DNA MER1_type 1 183 -6 351 280 93 9 chr4 31370245 31370352 -152918310 + MIR SINE MIR 51 166 -96 446 175 18 57 chr4 31370471 31370642 -152918020 + MLT1D LTR MaLR 3 235 -270 976 132 0 22 chr4 31370652 31370698 -152917964 + (GGAGAA)n Simple_repeat Simple_repeat 1 222 0 976 132 0 22 chr4 31370698 31370880 -152917782 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 1089 239 62 26 chr4 31370968 31371274 -152917388 + MLT1D LTR MaLR 181 497 -8 485 185 11 0 chr4 31371552 31371644 -152917018 + MER53 DNA DNA 96 188 -1 999 174 0 0 chr4 31372058 31372225 -152916437 - MLT1B LTR MaLR -42 348 182 261 313 0 0 chr4 31372366 31372433 -152916229 - MER63B DNA MER1_type 0 435 369 1381 166 0 17 chr4 31372458 31372792 -152915870 - MSTA LTR MaLR -2 426 1 1098 206 28 32 chr4 31372793 31373046 -152915616 - MER63B DNA MER1_type -167 269 18 351 283 10 10 chr4 31373049 31373148 -152915514 - MLT1L LTR MaLR -390 225 127 2013 160 70 11 chr4 31373181 31373555 -152915107 - MSTD LTR MaLR 0 396 1 216 275 145 14 chr4 31374196 31374265 -152914397 - MIR SINE MIR -1 261 184 315 0 0 0 chr4 31374543 31374578 -152914084 + (TC)n Simple_repeat Simple_repeat 2 36 0 1640 194 36 17 chr4 31374924 31375280 -152913382 + MLT1A1 LTR MaLR 3 365 0 23 68 0 0 chr4 31375753 31375797 -152912865 + AT_rich Low_complexity Low_complexity 1 44 0 4420 124 5 0 chr4 31375822 31376459 -152912203 + L1PA16 LINE L1 5519 6158 -8 204 321 186 14 chr4 31376478 31376618 -152912044 - MIR SINE MIR -86 176 13 203 354 62 8 chr4 31376640 31376770 -152911892 - L2 LINE L2 -849 2465 2329 1526 175 15 4 chr4 31377064 31377338 -152911324 + AluJo SINE Alu 1 277 -35 33 25 0 0 chr4 31377338 31377378 -152911284 + AT_rich Low_complexity Low_complexity 1 40 0 515 253 61 0 chr4 31377626 31377785 -152910877 + MIR SINE MIR 36 205 -57 2299 77 3 3 chr4 31377924 31378223 -152910439 - AluSp SINE Alu -14 299 1 1742 164 13 7 chr4 31378481 31378791 -152909871 - AluJo SINE Alu 0 312 1 363 366 15 8 chr4 31378848 31378979 -152909683 - MIR SINE MIR -61 147 16 196 339 0 15 chr4 31379221 31379286 -152909376 - L2 LINE L2 0 3272 3209 3013 123 25 53 chr4 31379949 31380219 -152908443 + MER41E LTR ERV1 1 277 -235 2298 97 0 0 chr4 31380219 31380530 -152908132 + AluSq SINE Alu 1 311 -2 3013 123 25 53 chr4 31380530 31380624 -152908038 + MER41E LTR ERV1 277 372 -140 2368 70 0 0 chr4 31380624 31380924 -152907738 - AluY SINE Alu -11 300 1 3013 123 25 53 chr4 31380924 31381085 -152907577 + MER41E LTR ERV1 372 512 0 1828 140 6 37 chr4 31383555 31383876 -152904786 + AluJb SINE Alu 1 311 -1 236 202 24 60 chr4 31384452 31384536 -152904126 + CT-rich Low_complexity Low_complexity 2 82 0 21 36 0 0 chr4 31385281 31385309 -152903353 + AT_rich Low_complexity Low_complexity 1 28 0 722 274 27 39 chr4 31386549 31386808 -152901854 - MIR SINE MIR -3 259 4 392 243 14 93 chr4 31387420 31387560 -152901102 - MIR SINE MIR -81 181 53 839 145 0 0 chr4 31387683 31387800 -152900862 + FLAM_C SINE Alu 2 118 -15 2342 89 0 6 chr4 31387832 31388146 -152900516 + AluSp SINE Alu 1 312 -1 565 235 43 31 chr4 31388229 31388391 -152900271 + MIR SINE MIR 65 228 -34 225 244 148 15 chr4 31389383 31389518 -152899144 + L1ME4a LINE L1 5966 6118 -3 1977 139 0 0 chr4 31389554 31389855 -152898807 + AluSx SINE Alu 1 301 -11 22 0 0 0 chr4 31389887 31389909 -152898753 + AT_rich Low_complexity Low_complexity 1 22 0 365 137 123 22 chr4 31390594 31390683 -152897979 - L1MB5 LINE L1 0 6180 6076 665 311 19 9 chr4 31391233 31391445 -152897217 + MIR SINE MIR 48 261 -1 210 244 0 0 chr4 31393538 31393579 -152895083 + (CA)n Simple_repeat Simple_repeat 2 42 0 431 245 57 116 chr4 31393965 31394130 -152894532 - L2 LINE L2 -7 3306 3133 1749 134 14 0 chr4 31394130 31394406 -152894256 - AluJo SINE Alu -32 280 1 431 245 57 116 chr4 31394406 31394686 -152893976 - L2 LINE L2 -180 3133 2798 274 355 0 11 chr4 31395071 31395164 -152893498 + MIR SINE MIR 14 105 -157 441 54 0 0 chr4 31395164 31395220 -152893442 + (TTCC)n Simple_repeat Simple_repeat 4 59 0 279 79 0 0 chr4 31396319 31396357 -152892305 + (TTCC)n Simple_repeat Simple_repeat 2 39 0 1857 162 3 0 chr4 31396357 31396666 -152891996 - AluSx SINE Alu -2 310 1 330 233 203 15 chr4 31396666 31396799 -152891863 + MIR SINE MIR 92 249 -13 185 326 0 0 chr4 31396843 31396892 -152891770 - MIR SINE MIR -64 144 96 219 69 0 0 chr4 31397353 31397382 -152891280 + (TTCCC)n Simple_repeat Simple_repeat 1 29 0 308 346 57 31 chr4 31397513 31397672 -152890990 - MER5A DNA MER1_type -10 179 17 513 254 136 31 chr4 31397710 31397918 -152890744 + MIR SINE MIR 35 262 0 236 277 77 15 chr4 31397989 31398054 -152890608 + L2 LINE L2 3203 3271 -1 2710 93 3 6 chr4 31398171 31398536 -152890126 + THE1B LTR MaLR 1 364 0 341 328 38 8 chr4 31398639 31398770 -152889892 - L2 LINE L2 -1 3271 3137 21 36 0 0 chr4 31399163 31399191 -152889471 + AT_rich Low_complexity Low_complexity 1 28 0 2082 106 3 7 chr4 31399191 31399505 -152889157 + AluSp SINE Alu 1 313 0 370 297 26 73 chr4 31400055 31400247 -152888415 + MIR SINE MIR 68 250 -12 322 253 162 58 chr4 31400258 31400499 -152888163 - L1ME4a LINE L1 -55 6066 5801 2224 95 0 0 chr4 31400659 31400953 -152887709 - AluSg SINE Alu -16 294 1 2033 102 0 27 chr4 31401221 31401514 -152887148 - AluSx SINE Alu -5 307 23 1276 204 38 14 chr4 31401531 31401820 -152886842 - AluJo SINE Alu -11 301 6 1095 117 0 0 chr4 31401941 31402095 -152886567 - AluSg/x SINE Alu -25 285 132 183 42 0 0 chr4 31402095 31402119 -152886543 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1932 95 11 35 chr4 31402119 31402404 -152886258 - AluSx SINE Alu -28 284 7 651 269 58 31 chr4 31402534 31402757 -152885905 - L2 LINE L2 0 3313 3085 1455 243 60 62 chr4 31402930 31403287 -152885375 + MLT1J LTR MaLR 1 359 -152 2046 109 0 7 chr4 31403287 31403600 -152885062 - AluSx SINE Alu 0 311 1 1455 243 60 62 chr4 31403600 31403739 -152884923 + MLT1J LTR MaLR 359 497 -14 815 160 23 0 chr4 31403961 31404092 -152884570 - AluJb SINE Alu -178 134 1 1799 172 0 0 chr4 31404104 31404400 -152884262 - AluSx SINE Alu -16 296 1 3603 50 9 7 chr4 31405113 31405556 -152883106 - MLT2A1 LTR ERVL 0 444 1 247 235 59 24 chr4 31405667 31405752 -152882910 - MIR SINE MIR -76 186 99 303 317 40 0 chr4 31406178 31406279 -152882383 + MIR SINE MIR 103 207 -55 218 383 17 40 chr4 31407427 31407602 -152881060 + L2 LINE L2 3102 3272 0 465 231 266 7 chr4 31407802 31407945 -152880717 - MIR SINE MIR -2 260 81 2131 171 8 3 chr4 31407999 31408362 -152880300 + MLT1A1 LTR MaLR 1 365 0 327 105 15 59 chr4 31408541 31408636 -152880026 + AluSx SINE Alu 1 47 -255 1559 105 22 49 chr4 31408657 31408924 -152879738 + AluSx SINE Alu 42 301 -11 938 286 73 22 chr4 31409144 31409333 -152879329 - L1MC4a LINE L1 -743 5403 5677 486 112 0 101 chr4 31409333 31409422 -152879240 + MADE1 DNA Mariner 1 80 0 938 286 73 22 chr4 31409422 31409926 -152878736 - L1MC4a LINE L1 -468 5678 5201 630 298 58 5 chr4 31409941 31410146 -152878516 + MIR SINE MIR 47 262 0 194 323 135 31 chr4 31410155 31410251 -152878411 - L3 LINE CR1 -185 1392 1287 182 322 93 8 chr4 31410788 31410906 -152877756 + L2 LINE L2 3130 3257 -56 683 160 23 0 chr4 31410914 31411089 -152877573 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 2283 195 68 35 chr4 31411228 31411402 -152877260 - L1MD2 LINE L1 -213 6146 5979 1427 167 14 54 chr4 31411402 31411729 -152876933 - AluJo SINE Alu 0 315 1 2283 195 68 35 chr4 31411729 31412122 -152876540 - L1MD2 LINE L1 -380 5979 5558 1954 116 3 3 chr4 31412426 31412731 -152875931 + AluSp SINE Alu 1 305 0 195 250 62 0 chr4 31414215 31414263 -152874399 - L2 LINE L2 -18 3254 3204 1621 163 10 23 chr4 31414395 31414701 -152873961 - AluJo SINE Alu -10 302 1 329 281 29 65 chr4 31415336 31415475 -152873187 + MIR SINE MIR 1 134 -128 736 293 98 25 chr4 31415799 31416116 -152872546 - LTR16B LTR ERVL 0 464 125 381 58 0 0 chr4 31416438 31416490 -152872172 + (TA)n Simple_repeat Simple_repeat 1 52 0 5312 149 26 3 chr4 31416490 31417407 -152871255 - L1MA5 LINE L1 -22 6278 5341 225 308 84 9 chr4 31417396 31417503 -152871159 + MIR SINE MIR 104 218 -44 * 260 395 0 1 chr4 31417495 31417601 -152871061 - L2 LINE L2 -10 3292 3158 525 250 97 23 chr4 31417796 31417972 -152870690 - MIR SINE MIR -56 206 18 1475 135 71 7 chr4 31418445 31418731 -152869931 - L1MC3 LINE L1 -81 7704 5937 386 274 42 0 chr4 31418956 31419051 -152869611 - MIR SINE MIR -76 186 88 872 117 22 0 chr4 31419654 31419791 -152868871 + L1PB1 LINE L1 6012 6151 0 433 344 54 57 chr4 31419837 31420154 -152868508 - L3 LINE CR1 -1258 319 4 705 299 37 45 chr4 31420787 31421093 -152867569 - L1MC4a LINE L1 -1983 5825 5523 2291 102 0 7 chr4 31421093 31421397 -152867265 + AluSq SINE Alu 1 302 -11 705 299 37 45 chr4 31421397 31421652 -152867010 - L1MC4a LINE L1 -2285 5523 5268 2175 106 33 3 chr4 31421854 31422155 -152866507 - AluSx SINE Alu -2 310 1 311 355 47 34 chr4 31422158 31422392 -152866270 - L1MC4a LINE L1 -1162 4984 4748 865 269 13 26 chr4 31422394 31422628 -152866034 + MIR SINE MIR 1 231 -31 2394 88 3 0 chr4 31422701 31422997 -152865665 - AluSp SINE Alu -16 297 1 188 324 118 52 chr4 31423011 31423147 -152865515 - MIR SINE MIR -115 147 3 412 283 46 13 chr4 31423651 31423803 -152864859 + MLT1J2 LTR MaLR 11 167 -283 1668 193 26 48 chr4 31423819 31424234 -152864428 + MLT2D LTR ERVL 1 406 -8 275 243 69 69 chr4 31424291 31424435 -152864227 + MLT1J2 LTR MaLR 264 407 -43 1868 196 56 25 chr4 31425126 31425575 -152863087 + MLT1C LTR MaLR 1 463 -4 268 292 0 0 chr4 31425625 31425690 -152862972 - MIR SINE MIR -110 98 34 22 35 0 0 chr4 31426350 31426379 -152862283 + AT_rich Low_complexity Low_complexity 1 29 0 1010 277 52 54 chr4 31426446 31426947 -152861715 - LTR67 LTR ERVL 0 557 58 342 0 0 0 chr4 31426951 31426989 -152861673 + (CA)n Simple_repeat Simple_repeat 2 39 0 724 165 17 0 chr4 31428343 31428458 -152860204 - FLAM_A SINE Alu -13 129 13 604 271 135 54 chr4 31428512 31428955 -152859707 + MLT1G1 LTR MaLR 110 588 -7 464 291 62 17 chr4 31429509 31429687 -152858975 - MIR SINE MIR -63 145 3 2226 108 0 3 chr4 31429831 31430127 -152858535 + AluSp SINE Alu 1 295 -18 258 105 0 0 chr4 31430129 31430167 -152858495 + (TA)n Simple_repeat Simple_repeat 2 39 0 739 279 25 37 chr4 31430195 31430439 -152858223 + MIR SINE MIR 12 252 -10 755 158 0 0 chr4 31431007 31431140 -152857522 - MER82 DNA MER2_type -437 216 84 234 267 48 9 chr4 31431144 31431249 -152857413 + L1ME4a LINE L1 5998 6106 -15 182 316 13 13 chr4 31431440 31431516 -152857146 - L3b LINE CR1 -362 1221 1146 2155 192 22 16 chr4 31431919 31432362 -152856300 + MER82 DNA MER2_type 1 446 -207 2150 204 166 41 chr4 31432362 31433096 -152855566 - LTR1B LTR ERV1 0 826 1 1018 242 5 0 chr4 31433096 31433305 -152855357 + MER82 DNA MER2_type 444 653 0 313 369 0 0 chr4 31433318 31433429 -152855233 - MIR SINE MIR -8 254 144 943 258 77 19 chr4 31433430 31433857 -152854805 + LTR1 LTR ERV1 4 455 -330 1611 173 50 21 chr4 31433990 31434273 -152854389 - AluJb SINE Alu -17 295 5 1949 138 3 0 chr4 31434342 31434652 -152854010 - AluSx SINE Alu 0 311 1 489 339 28 6 chr4 31435488 31435668 -152852994 - MIR SINE MIR -32 230 47 2168 103 0 56 chr4 31435695 31435868 -152852794 - AluSx SINE Alu -10 302 154 2405 61 7 7 chr4 31435868 31436178 -152852484 - AluY SINE Alu -1 310 1 2168 103 0 56 chr4 31436178 31436324 -152852338 - AluSx SINE Alu -158 154 1 606 217 138 69 chr4 31437084 31437462 -152851200 + MLT1J2 LTR MaLR 47 450 0 625 236 53 49 chr4 31437942 31438188 -152850474 - L1MC/D LINE L1 -2065 5743 5497 908 240 65 31 chr4 31438196 31438517 -152850145 - MLT1C LTR MaLR 0 467 136 234 188 0 0 chr4 31438511 31438559 -152850103 - Alu SINE Alu -72 94 47 * 769 197 7 0 chr4 31438559 31438696 -152849966 - AluJo SINE Alu -161 151 14 321 192 26 51 chr4 31438706 31438784 -152849878 - MLT1C LTR MaLR -429 76 1 2469 137 25 23 chr4 31438848 31439280 -152849382 + Tigger2a DNA MER2_type 1 433 -1 512 278 139 20 chr4 31439291 31439586 -152849076 + L2 LINE L2 1989 2318 -996 254 146 0 0 chr4 31439586 31439627 -152849035 - MER96B DNA MER1_type? -182 235 195 746 210 6 11 chr4 31439888 31440064 -152848598 - MER96B DNA MER1_type? -242 175 1 1079 292 151 20 chr4 31440064 31440897 -152847765 + L2 LINE L2 2337 3281 -32 1436 185 100 4 chr4 31440959 31441107 -152847555 - AluJo SINE Alu -16 296 164 189 0 0 0 chr4 31441107 31441128 -152847534 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1436 185 100 4 chr4 31441128 31441249 -152847413 - AluJo SINE Alu -148 164 1 216 226 38 0 chr4 31441418 31441471 -152847191 + (TCTCTG)n Simple_repeat Simple_repeat 4 58 0 387 168 65 47 chr4 31441972 31442079 -152846583 - MIR SINE MIR -89 173 65 656 154 0 9 chr4 31442378 31442488 -152846174 - MLT1A1 LTR MaLR 0 365 257 461 117 0 26 chr4 31442510 31442587 -152846075 - MLT1A1 LTR MaLR -281 84 10 237 200 0 0 chr4 31442695 31442750 -152845912 - MLT2B3 LTR ERVL 0 520 466 1609 128 15 158 chr4 31442780 31443172 -152845490 + Tigger3(Golem) DNA MER2_type 11 3026 -3 2661 168 47 18 chr4 31443184 31443678 -152844984 - MLT2B3 LTR ERVL -46 508 1 3472 51 7 0 chr4 31444086 31444520 -152844142 + L1PA8 LINE L1 5727 6163 -9 2196 114 30 0 chr4 31444827 31445124 -152843538 + AluSx SINE Alu 3 308 -4 212 380 20 20 chr4 31445745 31445845 -152842817 + L2 LINE L2 3179 3278 -35 444 223 17 109 chr4 31446459 31446634 -152842028 + MER5B DNA MER1_type 20 178 0 4561 123 14 46 chr4 31446919 31447045 -152841617 - L1PA15 LINE L1 -40 6125 5996 14517 137 14 5 chr4 31447045 31450288 -152838374 - L1PA10 LINE L1 -11 6157 2886 4561 123 14 46 chr4 31450288 31450973 -152837689 - L1PA15 LINE L1 -169 5996 5340 * 5309 179 13 6 chr4 31450971 31452012 -152836650 - L1PA15 LINE L1 -1485 4661 3613 1865 212 46 48 chr4 31452763 31453414 -152835248 - Charlie7 DNA MER1_type -3 2609 1960 348 290 31 0 chr4 31453474 31453636 -152835026 - Charlie7 DNA MER1_type -648 1964 1798 324 43 0 0 chr4 31453637 31453683 -152834979 + MADE1 DNA Mariner 1 46 -34 247 233 14 0 chr4 31453706 31453779 -152834883 - Charlie7 DNA MER1_type -823 1789 1716 29204 112 14 56 chr4 31453780 31460210 -152828452 - L1PA7 LINE L1 -1 6153 1 446 212 75 14 chr4 31460218 31460364 -152828298 - Charlie7 DNA MER1_type -899 1713 1559 905 154 48 5 chr4 31460956 31461253 -152827409 - THE1B LTR MaLR 0 364 1 1077 264 25 43 chr4 31461304 31461792 -152826870 - Charlie7 DNA MER1_type -1374 1238 760 4662 196 24 7 chr4 31461825 31462512 -152826150 - L1MB3 LINE L1 -2 6417 5743 306 0 0 0 chr4 31462512 31462546 -152826116 + (TG)n Simple_repeat Simple_repeat 1 34 0 4662 196 24 7 chr4 31462546 31463847 -152824815 - L1MB3 LINE L1 -676 5743 4392 257 292 75 13 chr4 31463871 31464179 -152824483 + L1M4 LINE L1 3168 3494 -2652 240 100 0 0 chr4 31464536 31464576 -152824086 + (CA)n Simple_repeat Simple_repeat 2 41 0 5777 206 41 37 chr4 31464599 31465850 -152822812 - L1MB3 LINE L1 -1966 4416 3171 1612 154 54 18 chr4 31465850 31466129 -152822533 + AluJo SINE Alu 1 289 -23 5777 206 41 37 chr4 31466129 31467459 -152821203 - L1MB3 LINE L1 -3211 3171 1735 1107 141 58 0 chr4 31467454 31467645 -152821017 - L1MB3 LINE L1 -6159 225 24 * 748 306 70 16 chr4 31467645 31468142 -152820520 - Charlie7 DNA MER1_type -1876 736 213 2783 72 3 6 chr4 31468213 31468562 -152820100 + THE1B LTR MaLR 17 364 0 1786 164 7 4 chr4 31468730 31469034 -152819628 + AluJo SINE Alu 1 305 0 213 341 22 0 chr4 31470282 31470373 -152818289 - MIR3 SINE MIR -5 203 111 2049 135 10 0 chr4 31470670 31470966 -152817696 - AluSg SINE Alu -11 299 1 1607 152 52 38 chr4 31471152 31471441 -152817221 - AluJb SINE Alu -19 293 1 366 246 174 36 chr4 31471441 31471598 -152817064 - MIR3 SINE MIR -8 200 17 2457 63 0 0 chr4 31472680 31472982 -152815680 - AluY SINE Alu -9 302 1 475 296 87 45 chr4 31473286 31473550 -152815112 + L2 LINE L2 3024 3298 -15 240 296 204 0 chr4 31473983 31474071 -152814591 + MIR SINE MIR 32 137 -71 1837 213 25 3 chr4 31474071 31474428 -152814234 - MLT1A1 LTR MaLR 0 365 1 1687 226 37 3 chr4 31474930 31475307 -152813355 + MLT1B LTR MaLR 1 390 0 2225 152 69 12 chr4 31475408 31475830 -152812832 + L1MA6 LINE L1 5679 6124 -176 2741 126 5 0 chr4 31475841 31476246 -152812416 - L1PB1 LINE L1 -3 6148 5742 859 158 33 11 chr4 31476246 31476428 -152812234 + L1MA6 LINE L1 6110 6297 -3 27 0 0 0 chr4 31476428 31476455 -152812207 + AT_rich Low_complexity Low_complexity 1 27 0 304 344 91 5 chr4 31476768 31476954 -152811708 + LTR67 LTR ERVL 356 557 0 207 285 145 89 chr4 31477035 31477214 -152811448 - MER5A DNA MER1_type 0 189 1 694 296 6 0 chr4 31477219 31477398 -152811264 - MIR SINE MIR -10 252 73 1572 144 186 55 chr4 31477410 31477487 -152811175 - MSTB1 LTR MaLR 0 432 366 2116 117 7 0 chr4 31477487 31477778 -152810884 + AluSq SINE Alu 1 293 -20 1572 144 186 55 chr4 31477778 31478082 -152810580 - MSTB1 LTR MaLR -66 366 1 316 229 100 50 chr4 31478938 31479078 -152809584 + MIR SINE MIR 55 201 -61 192 97 0 0 chr4 31479113 31479144 -152809518 + (GAAAA)n Simple_repeat Simple_repeat 2 32 0 212 348 11 22 chr4 31479172 31479264 -152809398 + MIR SINE MIR 16 106 -102 27 29 0 0 chr4 31479363 31479397 -152809265 + AT_rich Low_complexity Low_complexity 1 34 0 2510 172 15 17 chr4 31480087 31480506 -152808156 + MLT2C2 LTR ERVL 1 420 -44 360 43 0 0 chr4 31480506 31480552 -152808110 + (TG)n Simple_repeat Simple_repeat 2 47 0 2510 172 15 17 chr4 31480552 31480597 -152808065 + MLT2C2 LTR ERVL 420 464 0 853 209 15 15 chr4 31480787 31480988 -152807674 - LTR16C LTR ERVL -6 485 285 198 0 0 0 chr4 31481799 31481821 -152806841 + (GA)n Simple_repeat Simple_repeat 2 23 0 916 247 86 49 chr4 31482555 31482716 -152805946 + MLT1L LTR MaLR 111 265 -350 2372 84 3 6 chr4 31482716 31483049 -152805613 - L1PA8 LINE L1 -2 6170 5839 916 247 86 49 chr4 31483049 31483277 -152805385 + MLT1L LTR MaLR 265 581 -34 2984 56 13 8 chr4 31484437 31484830 -152803832 - L1PA8 LINE L1 -6 6166 5772 29 0 0 0 chr4 31485421 31485450 -152803212 + AT_rich Low_complexity Low_complexity 1 29 0 392 286 20 0 chr4 31486148 31486246 -152802416 + MER5A DNA MER1_type 10 109 -80 205 185 56 0 chr4 31486602 31486656 -152802006 + (TGAA)n Simple_repeat Simple_repeat 1 57 0 180 378 61 0 chr4 31486656 31486738 -152801924 + L2 LINE L2 3150 3236 -36 246 260 135 29 chr4 31486843 31486947 -152801715 - MIR SINE MIR -33 229 115 357 17 34 34 chr4 31487636 31487695 -152800967 + (CAAAAA)n Simple_repeat Simple_repeat 2 60 0 4349 214 65 37 chr4 31488083 31488815 -152799847 - L1ME1 LINE L1 -224 6737 6027 2074 130 0 3 chr4 31488815 31489108 -152799554 - AluSx SINE Alu -20 292 1 4349 214 65 37 chr4 31489108 31490519 -152798143 - L1ME1 LINE L1 -934 6027 4658 2018 148 3 0 chr4 31490519 31490817 -152797845 + AluJb SINE Alu 1 299 -13 4349 214 65 37 chr4 31490817 31491245 -152797417 - L1ME1 LINE L1 -2303 4658 4244 2445 82 0 0 chr4 31491245 31491548 -152797114 - AluY SINE Alu -8 303 1 4349 214 65 37 chr4 31491548 31492141 -152796521 - L1ME1 LINE L1 -2717 4244 3386 2754 265 92 51 chr4 31492140 31492254 -152796408 - L1ME1 LINE L1 -5202 1221 1113 * 1886 121 0 0 chr4 31492254 31492503 -152796159 + AluSx SINE Alu 39 287 -25 207 0 0 0 chr4 31492507 31492530 -152796132 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2754 265 92 51 chr4 31492530 31493568 -152795094 - L1ME1 LINE L1 -5312 1111 17 681 204 55 41 chr4 31493600 31493820 -152794842 - L1M4 LINE L1 -2428 3718 3496 1522 160 61 77 chr4 31493832 31494035 -152794627 - L1MC2 LINE L1 -38 6306 6110 522 225 0 36 chr4 31494035 31494173 -152794489 - FLAM_A SINE Alu 0 133 1 1522 160 61 77 chr4 31494173 31494344 -152794318 - L1MC2 LINE L1 -234 6110 5938 323 313 81 25 chr4 31494560 31494758 -152793904 - L1MC2 LINE L1 -23 6390 6182 641 162 0 44 chr4 31494771 31494907 -152793755 - FLAM_A SINE Alu 0 142 13 2125 157 32 20 chr4 31494921 31495323 -152793339 - L1MC2 LINE L1 -238 6175 5769 805 102 8 0 chr4 31495345 31495463 -152793199 + LTR15 LTR ERV1 1 119 -374 18571 31 1 1 chr4 31495463 31498398 -152790264 + L1PA4 LINE L1 3146 6080 -75 2613 77 32 13 chr4 31498417 31498794 -152789868 + LTR15 LTR ERV1 104 487 -6 342 139 0 42 chr4 31498787 31498859 -152789803 + AluSc SINE Alu 231 299 0 * 2486 164 48 44 chr4 31498860 31499894 -152788768 - L1MC2 LINE L1 -637 5776 4747 26 0 0 0 chr4 31499910 31499936 -152788726 + AT_rich Low_complexity Low_complexity 1 26 0 2003 141 0 0 chr4 31499936 31500226 -152788436 - AluSx SINE Alu -22 290 1 2576 273 79 19 chr4 31500240 31500425 -152788237 - L1MC2 LINE L1 -2669 3546 3373 297 0 0 0 chr4 31500425 31500458 -152788204 + (TG)n Simple_repeat Simple_repeat 1 33 0 2576 273 79 19 chr4 31500458 31501462 -152787200 - L1MC2 LINE L1 -2842 3373 2286 986 83 8 0 chr4 31501501 31501633 -152787029 - AluSq/x SINE Alu -180 133 1 584 258 115 85 chr4 31501651 31502051 -152786611 - L1MC2 LINE L1 -4105 2291 1880 854 200 77 91 chr4 31502158 31502363 -152786299 - MER46C DNA MER2_type -3 335 135 2443 63 0 0 chr4 31502363 31502663 -152785999 - AluY SINE Alu -11 300 1 854 200 77 91 chr4 31502663 31502797 -152785865 - MER46C DNA MER2_type -203 135 1 245 231 10 39 chr4 31502845 31502949 -152785713 + GA-rich Low_complexity Low_complexity 2 102 0 2127 121 3 19 chr4 31503633 31503948 -152784714 + AluSx SINE Alu 1 310 -2 235 130 37 0 chr4 31505073 31505127 -152783535 + (TA)n Simple_repeat Simple_repeat 1 56 0 1290 174 17 14 chr4 31505141 31505403 -152783259 - L1MB3 LINE L1 -164 6019 5756 253 279 115 39 chr4 31506092 31506196 -152782466 - L2 LINE L2 -13 3300 3189 4859 197 72 30 chr4 31506196 31506402 -152782260 + Charlie1a DNA MER1_type 1 197 -2564 2450 78 3 0 chr4 31506402 31506709 -152781953 - AluY SINE Alu -3 308 1 4859 197 72 30 chr4 31506709 31507754 -152780908 + Charlie1a DNA MER1_type 197 1305 -150 2014 159 17 0 chr4 31507766 31508112 -152780550 - L1MB3 LINE L1 -9 6174 5823 707 69 0 0 chr4 31508112 31508213 -152780449 - AluY SINE Alu -1 310 210 210 37 0 0 chr4 31508239 31508266 -152780396 + (TAA)n Simple_repeat Simple_repeat 2 28 0 586 173 53 23 chr4 31508266 31508399 -152780263 - L1MB3 LINE L1 -475 5708 5572 7215 35 0 1 chr4 31508407 31509267 -152779395 - L1PA3 LINE L1 0 6155 5297 407 186 52 0 chr4 31509283 31509380 -152779282 + Charlie1a DNA MER1_type 1304 1405 -50 569 196 0 0 chr4 31509380 31509482 -152779180 - FLAM_A SINE Alu -20 122 21 267 128 85 0 chr4 31509510 31509557 -152779105 + Charlie1a DNA MER1_type 1396 1446 -9 503 314 54 74 chr4 31509630 31510091 -152778571 + L3 LINE CR1 1118 1569 -8 335 333 120 0 chr4 31510779 31510929 -152777733 - MIR SINE MIR -73 189 22 25 0 0 0 chr4 31510996 31511021 -152777641 + AT_rich Low_complexity Low_complexity 1 25 0 2215 46 8 29 chr4 31512204 31512577 -152776085 + L1PA4 LINE L1 5663 6152 -3 185 348 201 26 chr4 31512631 31512970 -152775692 - L2 LINE L2 -40 3232 2835 674 235 23 86 chr4 31513158 31513460 -152775202 - L2 LINE L2 -1 3312 3030 209 319 75 11 chr4 31513429 31513523 -152775139 - L2 LINE L2 -661 2653 2554 * 5346 94 20 3 chr4 31513807 31514573 -152774089 - L1PA15 LINE L1 0 6165 5387 1522 230 50 45 chr4 31514649 31515188 -152773474 - L1MC5 LINE L1 -430 7531 6990 213 335 54 38 chr4 31515660 31515845 -152772817 - L2 LINE L2 -813 2501 2314 21 0 0 0 chr4 31516501 31516522 -152772140 + AT_rich Low_complexity Low_complexity 1 21 0 1546 71 5 0 chr4 31516673 31516869 -152771793 - MER107 DNA MER1_type 0 197 1 1958 149 0 3 chr4 31518035 31518336 -152770326 - AluSx SINE Alu -12 300 1 466 257 46 0 chr4 31518680 31518789 -152769873 - L2 LINE L2 -14 3299 3186 524 213 77 30 chr4 31520240 31520383 -152768279 - MIR SINE MIR 0 262 113 1400 181 211 18 chr4 31520386 31520718 -152767944 - MSTD LTR MaLR 0 396 1 352 337 32 0 chr4 31520723 31520818 -152767844 - MIR SINE MIR -155 107 10 695 357 71 38 chr4 31521464 31521993 -152766669 - L2 LINE L2 -22 3250 2701 350 272 29 48 chr4 31521989 31522092 -152766570 - L2 LINE L2 -1 3271 3171 * 184 333 11 33 chr4 31522115 31522205 -152766457 - L2 LINE L2 -661 2653 2566 361 179 179 9 chr4 31522320 31522426 -152766236 + L2 LINE L2 3190 3313 0 2323 93 0 3 chr4 31522562 31522863 -152765799 - AluY SINE Alu -11 300 1 1020 301 108 12 chr4 31523396 31523802 -152764860 + L2 LINE L2 2820 3264 -49 241 152 43 0 chr4 31524853 31524899 -152763763 - L1MC5 LINE L1 -89 7872 7825 22 0 0 0 chr4 31524972 31524994 -152763668 + AT_rich Low_complexity Low_complexity 1 22 0 3498 38 0 2 chr4 31525183 31525608 -152763054 + L1PA4 LINE L1 5724 6147 -8 1312 195 73 34 chr4 31525899 31526227 -152762435 + MER58B DNA MER1_type 1 341 0 253 340 150 0 chr4 31526227 31526327 -152762335 + L2 LINE L2 3148 3262 -10 186 42 0 0 chr4 31526966 31526990 -152761672 + L2 LINE L2 2332 2355 -959 180 152 0 0 chr4 31527133 31527166 -152761496 + (ATG)n Simple_repeat Simple_repeat 1 33 0 656 124 0 0 chr4 31527731 31527828 -152760834 - AluSg/x SINE Alu -8 302 206 320 116 0 0 chr4 31527828 31527887 -152760775 - Alu SINE Alu -262 40 1 189 315 0 0 chr4 31527959 31528013 -152760649 + L2 LINE L2 3211 3264 -8 221 383 74 40 chr4 31528057 31528232 -152760430 - L2 LINE L2 -4 3268 3088 3366 126 39 14 chr4 31528728 31529298 -152759364 - L1MC3 LINE L1 -13 7772 7189 395 264 0 0 chr4 31529298 31529389 -152759273 - MLT1F1 LTR MaLR -442 125 35 784 115 64 13 chr4 31529389 31529546 -152759116 - L1MC3 LINE L1 -688 7097 6933 492 206 11 0 chr4 31529547 31529639 -152759023 - MER103 DNA DNA -72 94 2 489 257 251 5 chr4 31529751 31529938 -152758724 - MIR SINE MIR 0 262 30 370 81 54 0 chr4 31530173 31530247 -152758415 + T-rich Low_complexity Low_complexity 2 79 0 7718 20 5 0 chr4 31530250 31531804 -152756858 - L1PA3 LINE L1 -3 6152 4595 4570 19 0 0 chr4 31531804 31532329 -152756333 + L1PA3 LINE L1 4077 4601 -1545 340 332 61 89 chr4 31532521 31532882 -152755780 + L2 LINE L2 2922 3272 0 584 269 141 29 chr4 31532908 31533291 -152755371 + L1ME4a LINE L1 5597 6022 -99 353 290 63 63 chr4 31533968 31534175 -152754487 - L3 LINE CR1 -74 1503 1297 188 268 174 58 chr4 31534704 31534842 -152753820 + L2 LINE L2 3160 3313 0 250 247 94 0 chr4 31535097 31535182 -152753480 + MIR SINE MIR 122 214 -48 16519 136 14 18 chr4 31535559 31538287 -152750375 - Tigger2 DNA MER2_type 0 2718 2 187 229 0 0 chr4 31539036 31539071 -152749591 - L2 LINE L2 -18 3295 3261 228 257 0 140 chr4 31539084 31539220 -152749442 - L2 LINE L2 -164 3108 2992 371 318 0 16 chr4 31539336 31539465 -152749197 - MIR SINE MIR 0 262 136 799 231 68 81 chr4 31539686 31540130 -152748532 + L1MC4 LINE L1 7321 7854 -188 445 311 62 10 chr4 31540239 31540448 -152748214 + L2 LINE L2 3094 3313 0 2116 96 4 4 chr4 31540729 31541031 -152747631 - AluY SINE Alu 0 302 1 1712 165 3 38 chr4 31542404 31542719 -152745943 - AluJo SINE Alu -8 304 1 25 31 0 0 chr4 31542744 31542776 -152745886 + AT_rich Low_complexity Low_complexity 1 32 0 21 82 0 0 chr4 31542885 31542934 -152745728 + AT_rich Low_complexity Low_complexity 1 49 0 189 162 0 0 chr4 31543619 31543656 -152745006 - L2 LINE L2 -310 2962 2926 222 323 135 0 chr4 31543663 31543759 -152744903 - L2 LINE L2 -580 2734 2626 32413 89 8 9 chr4 31543798 31548363 -152740299 + L1PA6 LINE L1 11 4571 -1575 6745 61 48 16 chr4 31548363 31549201 -152739461 + L1PA6 LINE L1 4489 5299 -855 2811 3 0 0 chr4 31549201 31549504 -152739158 + AluYa5 SINE Alu 1 303 -8 6745 61 48 16 chr4 31549504 31550302 -152738360 + L1PA6 LINE L1 5299 6154 0 550 365 93 3 chr4 31550393 31550703 -152737959 - L2 LINE L2 -691 2623 2286 942 303 152 14 chr4 31550726 31551391 -152737271 + L2 LINE L2 2464 3242 -71 233 203 141 0 chr4 31551869 31551933 -152736729 + L2 LINE L2 3226 3298 -15 234 62 0 0 chr4 31551935 31551967 -152736695 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 21 57 0 0 chr4 31552507 31552542 -152736120 + AT_rich Low_complexity Low_complexity 1 35 0 1679 153 20 35 chr4 31552706 31553052 -152735610 - L1MB8 LINE L1 -1 6177 5837 14392 92 10 2 chr4 31553071 31555745 -152732917 - L1PA4 LINE L1 0 6155 3465 1130 50 7 0 chr4 31555745 31555884 -152732778 - BC200 scRNA scRNA -60 140 1 26975 64 1 2 chr4 31555884 31559364 -152729298 - L1PA4 LINE L1 -2669 3477 1 30 0 0 0 chr4 31559408 31559438 -152729224 + AT_rich Low_complexity Low_complexity 1 30 0 380 268 98 68 chr4 31559615 31559880 -152728782 - L1ME4a LINE L1 -239 5882 5610 1951 143 3 3 chr4 31559907 31560200 -152728462 - AluSx SINE Alu -17 295 3 815 90 8 0 chr4 31560302 31560424 -152728238 + (TTC)n Simple_repeat Simple_repeat 1 123 0 9341 81 5 1 chr4 31560429 31562485 -152726177 - L1PA7 LINE L1 0 6154 4094 21 71 0 0 chr4 31563368 31563410 -152725252 + AT_rich Low_complexity Low_complexity 1 42 0 795 201 5 62 chr4 31563797 31563991 -152724671 + LTR41 LTR ERVL 3 185 -588 257 230 158 43 chr4 31564113 31564252 -152724410 + LTR50 LTR ERVL 488 642 -153 797 297 122 55 chr4 31564308 31564947 -152723715 + HAL1 LINE L1 237 918 -1589 2416 240 152 39 chr4 31565550 31566766 -152721896 + HAL1 LINE L1 945 2298 -209 268 333 37 100 chr4 31567363 31567633 -152721029 - L2 LINE L2 -16 3256 3004 2336 94 0 9 chr4 31567987 31568316 -152720346 - LTR17 LTR ERV1 -454 326 1 1623 65 0 0 chr4 31568316 31568516 -152720146 - HERV17 LTR ERV1 0 8626 8427 21 0 0 0 chr4 31568821 31568842 -152719820 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr4 31569430 31569463 -152719199 + AT_rich Low_complexity Low_complexity 1 33 0 498 311 45 0 chr4 31570278 31570410 -152718252 + MIR SINE MIR 16 153 -55 2197 250 58 50 chr4 31570559 31571320 -152717342 - L1ME3A LINE L1 0 6170 5398 630 169 99 16 chr4 31571323 31571479 -152717183 - MIR SINE MIR -94 114 1 25 83 0 0 chr4 31571486 31571546 -152717116 + AT_rich Low_complexity Low_complexity 1 60 0 229 289 26 70 chr4 31571730 31571844 -152716818 - L2 LINE L2 0 3272 3164 330 26 0 0 chr4 31572326 31572365 -152716297 + (CA)n Simple_repeat Simple_repeat 2 40 0 240 247 56 34 chr4 31572628 31572717 -152715945 - MER103 DNA DNA -9 157 67 247 164 16 16 chr4 31573532 31573593 -152715069 + (TA)n Simple_repeat Simple_repeat 2 62 0 3240 219 64 21 chr4 31573901 31574910 -152713752 - L1ME3A LINE L1 0 6170 5125 29 0 0 0 chr4 31575462 31575491 -152713171 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr4 31576140 31576175 -152712487 + AT_rich Low_complexity Low_complexity 1 35 0 208 174 0 22 chr4 31576346 31576392 -152712270 + T-rich Low_complexity Low_complexity 4 48 0 189 0 0 0 chr4 31576768 31576789 -152711873 + (TA)n Simple_repeat Simple_repeat 1 21 0 * 315 0 0 0 chr4 31576788 31576823 -152711839 + (CA)n Simple_repeat Simple_repeat 2 36 0 567 293 50 37 chr4 31577899 31578141 -152710521 + MIR SINE MIR 7 251 -11 35 71 0 0 chr4 31578174 31578244 -152710418 + AT_rich Low_complexity Low_complexity 1 70 0 23 0 0 0 chr4 31579364 31579387 -152709275 + AT_rich Low_complexity Low_complexity 1 23 0 298 360 126 9 chr4 31579517 31579739 -152708923 + L2 LINE L2 1233 1480 -1834 1974 136 7 3 chr4 31579783 31580085 -152708577 + AluSx SINE Alu 1 303 -9 186 363 12 25 chr4 31581061 31581141 -152707521 + MIR SINE MIR 2 80 -182 1805 146 35 0 chr4 31582200 31582371 -152706291 - AluSx SINE Alu -14 298 112 414 0 0 0 chr4 31582371 31582417 -152706245 + (TTA)n Simple_repeat Simple_repeat 2 47 0 1805 146 35 0 chr4 31582417 31582533 -152706129 - AluSx SINE Alu -200 112 1 248 109 455 0 chr4 31582922 31582977 -152705685 + MADE1 DNA Mariner 1 80 0 1628 153 68 36 chr4 31583184 31583549 -152705113 - LTR36 LTR ERV1 -234 377 1 378 333 8 0 chr4 31583576 31583699 -152704963 + Tigger8 DNA MER2_type 530 653 -13 198 300 14 29 chr4 31584793 31584863 -152703799 + MIR SINE MIR 20 88 -120 222 235 123 0 chr4 31585053 31585134 -152703528 + MIR3 SINE MIR 102 192 -16 22 35 0 0 chr4 31685588 31685617 -152603045 + AT_rich Low_complexity Low_complexity 1 29 0 182 241 167 0 chr4 31686142 31686196 -152602466 - MER5C DNA MER1_type -1 323 261 192 339 18 0 chr4 31686332 31686411 -152602251 - MIR SINE MIR -85 123 74 909 90 0 16 chr4 31686889 31687011 -152601651 - FRAM SINE Alu -14 162 43 588 288 33 0 chr4 31687262 31687415 -152601247 + MIR SINE MIR 37 194 -68 1684 163 31 31 chr4 31687435 31687755 -152600907 + MER2 DNA MER2_type 1 320 -25 772 240 153 100 chr4 31689435 31690056 -152598606 + L2 LINE L2 2574 3248 -65 302 205 12 0 chr4 31690757 31690840 -152597822 + (TATG)n Simple_repeat Simple_repeat 3 86 0 245 172 0 212 chr4 31690894 31690993 -152597669 + L2 LINE L2 3235 3312 -1 1468 121 5 5 chr4 31691225 31691440 -152597222 + AluSx SINE Alu 1 215 -97 1523 183 49 14 chr4 31692208 31692493 -152596169 - AluJo SINE Alu -17 295 1 187 403 0 0 chr4 31692567 31692629 -152596033 + MIR SINE MIR 40 101 -161 489 47 0 0 chr4 31693002 31693066 -152595596 + (TG)n Simple_repeat Simple_repeat 2 65 0 193 346 77 31 chr4 31693477 31693607 -152595055 + L3b LINE CR1 1183 1318 -265 21 0 0 0 chr4 31693690 31693711 -152594951 + AT_rich Low_complexity Low_complexity 1 21 0 242 206 48 16 chr4 31694381 31694444 -152594218 + MIR SINE MIR 105 169 -93 234 354 69 28 chr4 31695091 31695235 -152593427 - L2 LINE L2 -4 3268 3119 211 150 25 0 chr4 31697144 31697184 -152591478 + (TA)n Simple_repeat Simple_repeat 1 41 0 1227 189 43 4 chr4 31698389 31698622 -152590040 + AluJb SINE Alu 50 291 -21 2462 121 56 16 chr4 31698716 31699147 -152589515 + L1MB3 LINE L1 5728 6175 -8 205 211 0 0 chr4 31699362 31699400 -152589262 - L2 LINE L2 -8 3305 3268 770 213 23 6 chr4 31700466 31700640 -152588022 - Charlie1 DNA MER1_type -197 2564 2388 432 55 0 0 chr4 31700642 31700697 -152587965 + (TA)n Simple_repeat Simple_repeat 1 55 0 37490 85 9 7 chr4 31700697 31706820 -152581842 - L1PA6 LINE L1 -7 6147 11 180 0 0 0 chr4 31706825 31706845 -152581817 + (T)n Simple_repeat Simple_repeat 1 20 0 1959 118 15 0 chr4 31706990 31707262 -152581400 + AluSx SINE Alu 23 298 -14 1131 284 203 50 chr4 31707284 31708664 -152579998 - L2 LINE L2 -43 3270 1686 421 151 9 9 chr4 31708672 31708778 -152579884 + (TA)n Simple_repeat Simple_repeat 2 107 0 825 149 0 8 chr4 31710372 31710506 -152578156 - FLAM_C SINE Alu 0 133 1 261 86 0 0 chr4 31711377 31711412 -152577250 - L1MC4a LINE L1 -980 6828 6794 733 263 61 49 chr4 31711529 31711776 -152576886 + MIR SINE MIR 13 262 0 310 258 0 14 chr4 31711896 31711996 -152576666 - L1MC4 LINE L1 0 8034 7898 1571 246 82 34 chr4 31712015 31712601 -152576061 - L1MC4 LINE L1 -323 7719 7106 470 216 60 9 chr4 31712749 31712865 -152575797 - L1MC4 LINE L1 -995 7047 6926 1603 194 42 52 chr4 31712982 31713385 -152575277 - L1MC4a LINE L1 -968 6840 6442 206 370 41 0 chr4 31714687 31714760 -152573902 - L2 LINE L2 -20 3252 3177 2119 105 0 29 chr4 31714802 31715108 -152573554 - AluSx SINE Alu -15 297 1 21 82 0 0 chr4 31715692 31715741 -152572921 + AT_rich Low_complexity Low_complexity 1 49 0 21 36 0 0 chr4 31715988 31716016 -152572646 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr4 31716228 31716250 -152572412 + AT_rich Low_complexity Low_complexity 1 22 0 713 280 28 36 chr4 31716468 31716718 -152571944 + MIR SINE MIR 15 262 0 393 276 71 12 chr4 31718371 31718541 -152570121 + MIR SINE MIR 28 207 -55 318 342 48 80 chr4 31718583 31718896 -152569766 - L2 LINE L2 -45 3227 2925 222 344 189 28 chr4 31719012 31719224 -152569438 + MIR SINE MIR 9 254 -8 1949 149 0 0 chr4 31719395 31719677 -152568985 - AluSx SINE Alu -30 282 1 8440 145 30 5 chr4 31719733 31722161 -152566501 + L1MA4 LINE L1 3816 6300 0 187 236 91 18 chr4 31722202 31722257 -152566405 - MIR SINE MIR -129 79 21 267 141 16 0 chr4 31722525 31722585 -152566077 + L1PB3 LINE L1 6082 6147 -7 293 357 175 11 chr4 31722701 31722875 -152565787 - L2 LINE L2 -7 3306 3162 541 161 205 18 chr4 31722875 31722987 -152565675 + FLAM_C SINE Alu 1 133 0 293 357 175 11 chr4 31722987 31723190 -152565472 - L2 LINE L2 -151 3162 2867 761 285 102 70 chr4 31724499 31724972 -152563690 + L2 LINE L2 2160 2647 -667 397 288 219 45 chr4 31725124 31725457 -152563205 + L2 LINE L2 2883 3273 -40 22 35 0 0 chr4 31726361 31726390 -152562272 + AT_rich Low_complexity Low_complexity 1 29 0 398 250 84 32 chr4 31726419 31726580 -152562082 - MIR SINE MIR -50 212 43 35 41 0 0 chr4 31726670 31726719 -152561943 + AT_rich Low_complexity Low_complexity 1 49 0 21 36 0 0 chr4 31727140 31727168 -152561494 + AT_rich Low_complexity Low_complexity 1 28 0 356 243 97 48 chr4 31728097 31728200 -152560462 - L2 LINE L2 0 3272 3165 537 259 120 6 chr4 31728391 31728549 -152560113 + MIR SINE MIR 12 187 -75 2332 72 0 7 chr4 31729073 31729365 -152559297 + AluSc SINE Alu 1 290 -19 24 77 0 0 chr4 31729597 31729649 -152559013 + AT_rich Low_complexity Low_complexity 1 52 0 575 221 97 45 chr4 31732013 31732167 -152556495 - MER20 DNA MER1_type -57 162 1 1105 187 114 35 chr4 31734093 31734382 -152554280 - MLT1D LTR MaLR 0 505 194 288 318 9 28 chr4 31734385 31734492 -152554170 - MIR SINE MIR -68 140 36 510 245 127 63 chr4 31735270 31735507 -152553155 - MIR SINE MIR 0 262 11 299 67 0 0 chr4 31737759 31737804 -152550858 - AluSc SINE Alu -4 295 251 200 184 20 0 chr4 31737923 31737972 -152550690 + CT-rich Low_complexity Low_complexity 2 51 0 22 56 0 0 chr4 31739037 31739073 -152549589 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr4 31739641 31739664 -152548998 + AT_rich Low_complexity Low_complexity 1 23 0 212 276 77 74 chr4 31739914 31740031 -152548631 + MIR SINE MIR 4 117 -91 2204 99 20 0 chr4 31740612 31740906 -152547756 + AluSg SINE Alu 1 300 -10 472 296 101 20 chr4 31741838 31742183 -152546479 - L1ME LINE L1 -426 5736 5364 271 313 175 21 chr4 31742376 31742804 -152545858 - L1ME LINE L1 -1096 5050 4557 553 274 49 46 chr4 31743091 31743376 -152545286 - L1ME LINE L1 -1983 4163 3878 248 255 123 39 chr4 31743456 31743587 -152545075 - L1ME LINE L1 -2380 3766 3620 1823 137 29 44 chr4 31743587 31743929 -152544733 + MER44D DNA MER2_type 2 608 -1 248 255 123 39 chr4 31743929 31743949 -152544713 - L1ME LINE L1 -2526 3620 3603 486 283 64 72 chr4 31743977 31744228 -152544434 + MIR SINE MIR 2 250 -12 758 260 126 55 chr4 31744394 31745470 -152543192 - L1ME LINE L1 -2715 3431 2279 1042 275 90 73 chr4 31745941 31747201 -152541461 - L1MEd LINE L1 -833 1657 282 205 396 86 30 chr4 31747253 31747556 -152541106 - L2 LINE L2 -2701 613 294 2621 203 43 25 chr4 31748517 31749122 -152539540 - MLT1E3 LTR MaLR -8 616 1 245 56 0 0 chr4 31750125 31750161 -152538501 - Alu SINE Alu -6 294 259 538 349 29 11 chr4 31750421 31750596 -152538066 - MIR3 SINE MIR -17 191 14 861 284 159 22 chr4 31751579 31752301 -152536361 - L2 LINE L2 0 3313 2486 680 245 104 37 chr4 31755788 31756163 -152532499 - L1ME4a LINE L1 -3 6118 5719 822 162 78 22 chr4 31756181 31756360 -152532302 - MIR SINE MIR -11 251 63 374 384 73 0 chr4 31757055 31757219 -152531443 - L2 LINE L2 -1 3271 3096 219 299 154 13 chr4 31758972 31759200 -152529462 + L2 LINE L2 2799 3084 -188 898 183 17 17 chr4 31759235 31759410 -152529252 - AluJb SINE Alu -2 310 136 2047 88 19 53 chr4 31759430 31759748 -152528914 - AluSx SINE Alu -3 309 3 341 139 51 51 chr4 31759751 31759830 -152528832 - AluJb SINE Alu -160 142 64 227 250 204 64 chr4 31759847 31760019 -152528643 + L2 LINE L2 3118 3313 0 188 220 77 88 chr4 31760625 31760716 -152527946 - L2 LINE L2 -783 2531 2442 293 279 71 123 chr4 31760774 31761100 -152527562 - MLT1J LTR MaLR -202 309 1 195 222 0 0 chr4 31761157 31761202 -152527460 + (TG)n Simple_repeat Simple_repeat 1 45 0 811 267 106 32 chr4 31761250 31761598 -152527064 - L2 LINE L2 -15 3298 2925 448 319 64 10 chr4 31761856 31762060 -152526602 + MIR SINE MIR 12 226 -36 2167 60 70 3 chr4 31762495 31762780 -152525882 - AluY SINE Alu -7 304 1 191 380 41 41 chr4 31763121 31763392 -152525270 + L2 LINE L2 1469 1739 -1575 307 268 146 0 chr4 31763450 31763573 -152525089 - LTR37B LTR ERV1 -63 405 265 451 272 34 7 chr4 31763715 31763862 -152524800 - LTR37B LTR ERV1 -313 155 5 14396 149 46 17 chr4 31764371 31765752 -152522910 - L1PB1 LINE L1 -1 6866 5527 1837 133 21 0 chr4 31765752 31766082 -152522580 - AluSq SINE Alu 0 336 1 14396 149 46 17 chr4 31766082 31770244 -152518418 - L1PB1 LINE L1 -1340 5527 1034 2427 68 0 0 chr4 31770244 31770540 -152518122 - AluY SINE Alu -15 296 1 14396 149 46 17 chr4 31770540 31771605 -152517057 - L1PB1 LINE L1 -5833 1034 1 282 298 58 25 chr4 31772017 31772138 -152516524 - MER31-int LTR ERV1 -973 3963 3839 238 116 116 0 chr4 31772427 31772447 -152516215 - MER58A DNA MER1_type -2196 224 208 1875 27 0 0 chr4 31772447 31772666 -152515996 - L1PA3 LINE L1 0 6155 5937 238 116 116 0 chr4 31772666 31772688 -152515974 - MER58A DNA MER1_type -2212 208 177 1001 84 0 0 chr4 31772691 31772822 -152515840 - AluSc SINE Alu -9 300 170 463 83 0 0 chr4 31772822 31772882 -152515780 - AluSc SINE Alu -108 201 142 479 285 38 54 chr4 31772882 31773068 -152515594 - MER58A DNA MER1_type -40 184 2 401 284 5 109 chr4 31774457 31774668 -152513994 + MER58C DNA MER1_type 27 215 0 1335 267 71 86 chr4 31774759 31775912 -152512750 + L1MEc LINE L1 714 1849 -4547 729 148 0 0 chr4 31775968 31776076 -152512586 - FLAM_C SINE Alu -31 112 5 1118 287 54 29 chr4 31776084 31776422 -152512240 + L1MEc LINE L1 1836 2164 -4051 2012 112 79 0 chr4 31776422 31776700 -152511962 + AluSg SINE Alu 1 300 -10 1118 287 54 29 chr4 31776700 31777193 -152511469 + L1MEc LINE L1 2164 2647 -3568 2269 103 0 0 chr4 31777894 31778185 -152510477 + AluSq SINE Alu 1 291 -22 383 0 0 21 chr4 31778191 31778239 -152510423 + (TAA)n Simple_repeat Simple_repeat 2 48 0 461 289 60 0 chr4 31778478 31778627 -152510035 + Charlie8 DNA MER1_type 6 163 -2254 354 213 0 0 chr4 31780145 31780220 -152508442 - MER117 DNA MER1_type -115 82 8 2125 158 36 124 chr4 31780307 31780704 -152507958 + LTR32 LTR ERVL 15 361 -110 2072 122 7 0 chr4 31780704 31780990 -152507672 + AluSx SINE Alu 1 288 -24 2125 158 36 124 chr4 31780990 31781093 -152507569 + LTR32 LTR ERVL 361 471 0 1584 128 0 0 chr4 31781671 31781897 -152506765 - AluSg/x SINE Alu -3 309 84 2021 118 17 0 chr4 31782410 31782699 -152505963 - AluSx SINE Alu -18 294 1 195 42 0 0 chr4 31783713 31783737 -152504925 + (TG)n Simple_repeat Simple_repeat 1 24 0 1467 262 108 6 chr4 31787988 31788477 -152500185 + MLT1H LTR MaLR 11 549 0 2335 21 68 0 chr4 31788664 31788945 -152499717 - L1PA4 LINE L1 -2 6153 5854 241 257 0 54 chr4 31788945 31789008 -152499654 + LTR33 LTR ERVL 118 178 -343 279 279 21 71 chr4 31789514 31789654 -152499008 + MIR SINE MIR 60 192 -70 480 306 28 52 chr4 31790526 31790778 -152497884 + MIR SINE MIR 17 262 0 1682 186 3 13 chr4 31791354 31791661 -152497001 + AluJb SINE Alu 1 304 -8 993 241 111 26 chr4 31791801 31792313 -152496349 + MLT1F1 LTR MaLR 1 542 0 1121 198 57 0 chr4 31792621 31792833 -152495829 - MER58A DNA MER1_type 0 224 1 624 174 0 0 chr4 31793124 31793233 -152495429 + MER45B DNA AcHobo 727 835 -205 2332 108 0 10 chr4 31793534 31793841 -152494821 - AluSx SINE Alu -8 304 1 4427 191 38 65 chr4 31793855 31794245 -152494417 - MER45B DNA AcHobo -548 1033 634 1968 163 0 0 chr4 31794245 31794552 -152494110 - AluJo SINE Alu -5 307 1 4427 191 38 65 chr4 31794552 31794744 -152493918 - MER45B DNA AcHobo -947 634 438 1764 188 92 45 chr4 31794744 31795190 -152493472 - MLT1C LTR MaLR 0 467 1 4427 191 38 65 chr4 31795190 31795501 -152493161 - MER45B DNA AcHobo -1143 438 168 2083 97 83 0 chr4 31795501 31795790 -152492872 + AluSq SINE Alu 1 313 0 4427 191 38 65 chr4 31795790 31795923 -152492739 - MER45B DNA AcHobo -1413 168 33 2161 183 95 12 chr4 31795935 31796357 -152492305 + LTR32 LTR ERVL 15 471 0 913 211 57 38 chr4 31797012 31797464 -152491198 - MLT1H LTR MaLR 0 549 3 1852 139 18 4 chr4 31797713 31797994 -152490668 - AluJb SINE Alu -3 309 25 224 348 30 22 chr4 31798015 31798150 -152490512 - MER5A DNA MER1_type -7 182 47 388 274 10 0 chr4 31798467 31798569 -152490093 + MER5A DNA MER1_type 3 105 -84 239 286 139 8 chr4 31800344 31800610 -152488052 + L1ME LINE L1 4923 5223 -923 43540 35 21 2 chr4 31800642 31806707 -152481955 - L1PA2 LINE L1 0 6155 1 930 261 22 86 chr4 31806708 31806875 -152481787 + L1ME LINE L1 5270 5446 -724 2160 129 0 7 chr4 31806875 31807184 -152481478 + AluSx SINE Alu 1 307 -5 930 261 22 86 chr4 31807184 31807480 -152481182 + L1ME LINE L1 5446 5703 -467 267 175 0 0 chr4 31807483 31807540 -152481122 + (TA)n Simple_repeat Simple_repeat 1 57 0 372 300 87 10 chr4 31807549 31807775 -152480887 + L1MC4a LINE L1 5665 5909 -284 657 235 63 126 chr4 31808272 31808685 -152479977 + MLT1L LTR MaLR 229 615 0 2026 133 0 7 chr4 31809947 31810257 -152478405 - AluSx SINE Alu 0 308 1 217 228 236 8 chr4 31810273 31810400 -152478262 - MIR SINE MIR -1 261 106 245 370 56 6 chr4 31812286 31812448 -152476214 + MIR3 SINE MIR 32 201 -7 265 267 33 44 chr4 31813215 31813305 -152475357 + MLT1K LTR MaLR 211 299 -289 288 91 0 0 chr4 31813670 31813714 -152474948 + (TCCA)n Simple_repeat Simple_repeat 3 46 0 341 308 33 0 chr4 31813715 31813835 -152474827 - L2 LINE L2 -8 3264 3141 1366 218 80 32 chr4 31813843 31814285 -152474377 - MLT1C LTR MaLR -3 590 1 240 324 32 50 chr4 31814592 31814811 -152473851 - L2 LINE L2 -424 2890 2676 246 250 228 0 chr4 31816160 31816296 -152472366 + L1ME LINE L1 5650 5816 -305 787 217 66 45 chr4 31816576 31816774 -152471888 - L1MB5 LINE L1 -6 6168 5967 533 276 129 13 chr4 31816967 31817199 -152471463 + MIR SINE MIR 2 260 -2 4175 98 2 0 chr4 31817463 31818015 -152470647 - MER41A LTR ERV1 -1 553 1 371 256 17 34 chr4 31818024 31818141 -152470521 - L3 LINE CR1 -392 1185 1071 972 262 80 43 chr4 31818340 31818825 -152469837 + L2 LINE L2 2809 3311 -2 1125 203 155 19 chr4 31818849 31819165 -152469497 + MER90 LTR ERV1 1 359 -216 597 167 0 0 chr4 31819196 31819298 -152469364 - L1MCa LINE L1 -5678 748 647 697 230 59 21 chr4 31819309 31819496 -152469166 + MER90 LTR ERV1 407 600 -14 4003 154 11 33 chr4 31819788 31820515 -152468147 - MER50 LTR ERV1 -23 711 1 211 274 0 0 chr4 31820642 31820693 -152467969 - L2 LINE L2 -11 3302 3252 330 182 68 34 chr4 31821876 31821964 -152466698 - L1MC2 LINE L1 -32 6312 6222 1718 129 4 0 chr4 31821964 31822212 -152466450 - AluJb SINE Alu -14 298 50 718 179 8 0 chr4 31822214 31822337 -152466325 - AluJo/FLAM SINE Alu -187 125 2 741 201 83 6 chr4 31822338 31822507 -152466155 - L1MC2 LINE L1 -114 6230 6049 252 313 26 35 chr4 31823653 31823768 -152464894 - MIR SINE MIR -114 148 35 1892 109 0 8 chr4 31823883 31824149 -152464513 + L1PA8A LINE L1 5864 6127 -4 379 231 9 46 chr4 31824227 31824335 -152464327 - MIR SINE MIR -71 191 88 569 261 17 19 chr4 31824470 31824649 -152464013 - MIR SINE MIR -67 141 16 373 261 130 19 chr4 31824658 31824784 -152463878 - MER5B DNA MER1_type -5 184 37 203 305 17 0 chr4 31825160 31825219 -152463443 + MIR3 SINE MIR 95 154 -54 527 231 58 8 chr4 31825299 31825420 -152463242 + L2 LINE L2 3187 3313 0 332 282 40 24 chr4 31825417 31825541 -152463121 + MER5A DNA MER1_type 64 189 0 * 459 272 32 8 chr4 31826238 31826363 -152462299 + MER5B DNA MER1_type 7 134 -44 470 168 30 10 chr4 31826452 31826553 -152462109 - L1MC2 LINE L1 0 6344 6242 213 39 0 0 chr4 31827317 31827343 -152461319 + (TAA)n Simple_repeat Simple_repeat 1 26 0 651 278 17 17 chr4 31827524 31827704 -152460958 + MIR3 SINE MIR 16 195 -13 188 290 72 0 chr4 31827776 31827845 -152460817 - L2 LINE L2 -3225 89 16 2010 177 85 11 chr4 31827851 31828286 -152460376 + MLT1C LTR MaLR 1 467 0 218 286 29 67 chr4 31828310 31828415 -152460247 + MIR SINE MIR 161 261 -1 217 192 39 0 chr4 31828415 31828467 -152460195 + GA-rich Low_complexity Low_complexity 3 56 0 296 257 112 84 chr4 31828486 31828665 -152459997 - MIR SINE MIR -19 189 3 285 29 0 0 chr4 31828708 31828742 -152459920 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 296 102 20 0 chr4 31829173 31829222 -152459440 + (CATCC)n Simple_repeat Simple_repeat 3 52 0 199 163 23 0 chr4 31829414 31829457 -152459205 - L2 LINE L2 -345 2968 2925 1654 244 28 13 chr4 31830297 31830757 -152457905 - MLT1C LTR MaLR 0 467 1 288 71 47 39 chr4 31830970 31831097 -152457565 + HERV17 LTR ERV1 706 833 -7793 21 0 0 0 chr4 31832026 31832047 -152456615 + AT_rich Low_complexity Low_complexity 1 21 0 272 244 59 59 chr4 31832722 31832841 -152455821 + L2 LINE L2 2641 2759 -555 567 236 0 0 chr4 31832845 31832955 -152455707 + MLT2C1 LTR ERVL 248 357 -40 207 211 33 22 chr4 31832959 31833049 -152455613 + (CATATA)n Simple_repeat Simple_repeat 4 94 0 285 109 0 0 chr4 31833078 31833124 -152455538 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 320 51 0 0 chr4 31833127 31833166 -152455496 + MLT2C1 LTR ERVL 357 395 -2 1141 278 72 69 chr4 31833224 31833766 -152454896 + MLT1G1 LTR MaLR 49 595 0 545 292 65 6 chr4 31833808 31833976 -152454686 + L2 LINE L2 3134 3311 -2 184 141 22 76 chr4 31834000 31834092 -152454570 + CT-rich Low_complexity Low_complexity 3 89 0 2090 112 3 3 chr4 31834211 31834507 -152454155 + AluSq SINE Alu 1 296 -17 694 266 3 121 chr4 31835400 31835690 -152452972 - L2 LINE L2 -8 3264 3009 1864 156 23 0 chr4 31835690 31835991 -152452671 + AluSx SINE Alu 1 308 -4 15411 52 32 0 chr4 31835991 31838650 -152450012 + L1PA6 LINE L1 3445 6135 -19 465 19 0 0 chr4 31838650 31838704 -152449958 + (TA)n Simple_repeat Simple_repeat 1 54 0 228 35 0 0 chr4 31838705 31838734 -152449928 + (GA)n Simple_repeat Simple_repeat 2 30 0 318 50 0 0 chr4 31838812 31838852 -152449810 + (GA)n Simple_repeat Simple_repeat 1 40 0 220 291 18 0 chr4 31839832 31839887 -152448775 - L2 LINE L2 -7 3265 3210 387 175 0 25 chr4 31840356 31840436 -152448226 + MLT1K LTR MaLR 493 570 -18 1976 157 63 23 chr4 31841033 31841355 -152447307 + MLT1A1 LTR MaLR 1 340 -25 2563 101 30 52 chr4 31841355 31841762 -152446900 - MER48 LTR ERV1 0 398 1 1976 157 63 23 chr4 31841762 31841790 -152446872 + MLT1A1 LTR MaLR 340 365 0 25 0 0 0 chr4 31842890 31842915 -152445747 + AT_rich Low_complexity Low_complexity 1 25 0 566 143 65 39 chr4 31843013 31843167 -152445495 - MER96B DNA MER1_type? -20 397 240 1966 142 70 25 chr4 31843321 31843680 -152444982 - THE1C LTR MaLR 0 375 1 478 250 183 6 chr4 31843744 31843924 -152444738 - MIR SINE MIR -36 226 15 257 316 168 57 chr4 31843961 31844205 -152444457 - L3 LINE CR1 -5 1572 1302 281 333 113 21 chr4 31844393 31844534 -152444128 + L2 LINE L2 3110 3263 -9 283 298 8 73 chr4 31844630 31844754 -152443908 + MIR SINE MIR 20 135 -127 687 265 82 8 chr4 31846130 31846522 -152442140 + LTR33 LTR ERVL 47 519 -2 658 294 95 47 chr4 31846607 31847019 -152441643 - L2 LINE L2 -1 3312 2870 2322 99 0 0 chr4 31847019 31847332 -152441330 + AluSq SINE Alu 1 313 0 658 294 95 47 chr4 31847332 31847534 -152441128 - L2 LINE L2 -443 2870 2679 1464 18 0 0 chr4 31848262 31848430 -152440232 - L1PA4 LINE L1 0 6155 5988 1883 18 14 0 chr4 31848430 31848648 -152440014 + L1PA4 LINE L1 5639 5859 -296 260 149 21 0 chr4 31848883 31848930 -152439732 + L2 LINE L2 3225 3272 0 562 231 31 38 chr4 31849083 31849243 -152439419 - MIR SINE MIR -76 186 28 711 264 25 0 chr4 31849511 31849670 -152438992 + MIR SINE MIR 88 250 -12 240 35 0 0 chr4 31849679 31849708 -152438954 + (TCC)n Simple_repeat Simple_repeat 3 31 0 253 271 86 0 chr4 31849714 31849784 -152438878 + L2 LINE L2 3007 3082 -190 218 274 0 0 chr4 31849870 31849921 -152438741 + (CATA)n Simple_repeat Simple_repeat 1 51 0 250 337 12 0 chr4 31849932 31850018 -152438644 + L2 LINE L2 3182 3268 -4 210 71 0 0 chr4 31850656 31850684 -152437978 + (A)n Simple_repeat Simple_repeat 1 28 0 2091 131 50 34 chr4 31850896 31851254 -152437408 - THE1B LTR MaLR 0 364 1 2939 165 48 91 chr4 31852592 31853423 -152435239 + MER4E LTR ERV1 1 903 0 405 211 266 0 chr4 31853607 31853735 -152434927 + MER5A DNA MER1_type 10 171 -18 3451 152 8 2 chr4 31853902 31854430 -152434232 + LTR26B LTR ERV1 1 531 0 1830 134 7 13 chr4 31854517 31854815 -152433847 - AluJb SINE Alu -16 296 1 539 144 0 0 chr4 31905004 31905094 -152383568 + AluY SINE Alu 213 302 -9 2464 125 17 6 chr4 31905394 31905754 -152382908 - THE1B LTR MaLR 0 364 1 1488 156 11 40 chr4 31906155 31906431 -152382231 + MLT2B3 LTR ERVL 1 268 -286 989 152 0 33 chr4 31906421 31906605 -152382057 + MLT2B2 LTR ERVL 336 513 -2 * 1054 168 59 9 chr4 31906606 31906826 -152381836 - LTR47B LTR ERVL 0 443 213 711 156 23 23 chr4 31907666 31907794 -152380868 - FLAM_A SINE Alu -5 128 1 1787 162 40 0 chr4 31907975 31908277 -152380385 - AluSq SINE Alu 0 313 1 236 313 60 0 chr4 31908732 31908815 -152379847 + MLT1K LTR MaLR 17 104 -484 699 275 110 64 chr4 31908816 31909271 -152379391 + MLT1K LTR MaLR 1 476 0 1012 167 17 0 chr4 31909699 31909879 -152378783 - MLT1A1 LTR MaLR 0 365 183 * 2044 149 29 0 chr4 31909859 31910208 -152378454 + THE1B LTR MaLR 6 364 0 853 187 60 11 chr4 31910215 31910397 -152378265 - MLT1A1 LTR MaLR -162 203 13 213 206 88 44 chr4 31910861 31910929 -152377733 + L2 LINE L2 3233 3303 -10 758 256 0 37 chr4 31911331 31911573 -152377089 + MER106A DNA MER1_type 1 233 -3 277 266 133 41 chr4 31911578 31911796 -152376866 - Charlie8 DNA MER1_type -2167 250 13 294 370 15 0 chr4 31913978 31914113 -152374549 + MIR SINE MIR 109 245 -17 2405 84 0 0 chr4 31914543 31914842 -152373820 - AluY SINE Alu -12 299 1 5868 80 13 18 chr4 31915441 31916831 -152371831 - L1PA10 LINE L1 0 6168 4792 185 77 0 0 chr4 31916961 31916987 -152371675 + L2 LINE L2 3273 3298 -15 827 267 164 9 chr4 31917394 31917735 -152370927 + L2 LINE L2 1879 2272 -1042 1702 196 51 11 chr4 31917842 31918215 -152370447 - LTR32 LTR ERVL -69 402 15 1694 258 140 13 chr4 31918215 31918738 -152369924 + L2 LINE L2 2327 2915 -399 200 274 48 0 chr4 31918734 31918796 -152369866 + L2 LINE L2 3249 3313 0 * 823 123 7 7 chr4 31918797 31918943 -152369719 + (GGAA)n Simple_repeat Simple_repeat 2 147 0 379 300 29 21 chr4 31919967 31920107 -152368555 + MIR SINE MIR 20 160 -102 358 255 29 29 chr4 31920820 31920922 -152367740 - MIR SINE MIR -157 105 4 3080 225 47 4 chr4 31921163 31922104 -152366558 + L1M4 LINE L1 2423 3403 -2743 491 144 0 10 chr4 31922144 31922241 -152366421 + L1MB7 LINE L1 6089 6184 0 504 211 48 81 chr4 31923507 31923716 -152364946 - MLT1K LTR MaLR -61 527 326 3944 106 0 4 chr4 31923901 31924430 -152364232 + MER1A DNA MER1_type 1 527 0 2196 127 3 0 chr4 31924781 31925089 -152363573 - AluSx SINE Alu -3 309 1 2135 62 0 0 chr4 31926148 31926405 -152362257 + AluY SINE Alu 45 301 -10 1644 175 3 52 chr4 31926626 31926934 -152361728 - AluJo SINE Alu -19 293 1 1786 128 56 0 chr4 31927485 31927789 -152360873 - MER83C LTR ERV1 -3 370 50 1038 227 76 67 chr4 31928163 31928517 -152360145 - MLT1C LTR MaLR 0 467 107 2129 142 0 0 chr4 31928517 31928826 -152359836 - AluSx SINE Alu -3 309 1 1038 227 76 67 chr4 31928826 31928934 -152359728 - MLT1C LTR MaLR -360 107 1 2298 101 3 3 chr4 31929017 31929324 -152359338 - AluY SINE Alu -4 307 1 1812 192 3 3 chr4 31929783 31930095 -152358567 - AluJb SINE Alu 0 312 1 2441 80 0 22 chr4 31930503 31930816 -152357846 + AluY SINE Alu 1 306 -5 30 83 0 0 chr4 31931255 31931327 -152357335 + AT_rich Low_complexity Low_complexity 1 72 0 748 274 118 44 chr4 31931498 31931634 -152357028 - L2 LINE L2 -1 3312 3187 2634 87 3 43 chr4 31931634 31931676 -152356986 - THE1C LTR MaLR 0 375 333 2243 107 0 16 chr4 31931676 31931984 -152356678 + AluY SINE Alu 9 311 0 2634 87 3 43 chr4 31931984 31932332 -152356330 - THE1C LTR MaLR -42 333 1 748 274 118 44 chr4 31932332 31932560 -152356102 - L2 LINE L2 -126 3187 2921 24 53 0 0 chr4 31933650 31933688 -152354974 + AT_rich Low_complexity Low_complexity 1 38 0 279 54 0 0 chr4 31933693 31933730 -152354932 + (TG)n Simple_repeat Simple_repeat 2 38 0 213 121 0 0 chr4 31934438 31934471 -152354191 + (TTTC)n Simple_repeat Simple_repeat 1 33 0 186 189 0 0 chr4 31935095 31935132 -152353530 + (TG)n Simple_repeat Simple_repeat 1 37 0 545 238 19 62 chr4 31935468 31935628 -152353034 + MIR SINE MIR 13 165 -97 316 296 24 32 chr4 31935695 31935820 -152352842 + MLT2E LTR ERVL 32 155 -473 185 327 20 20 chr4 31936149 31936250 -152352412 + MIR SINE MIR 159 259 -3 269 247 90 11 chr4 31936391 31936480 -152352182 + MIR SINE MIR 142 237 -25 2087 94 0 62 chr4 31938725 31939034 -152349628 - AluSx SINE Alu -22 290 1 1918 142 62 30 chr4 31939753 31940126 -152348536 + Tigger2 DNA MER2_type 2334 2718 0 222 114 57 29 chr4 31940139 31940244 -152348418 + (TA)n Simple_repeat Simple_repeat 1 108 0 28 61 0 0 chr4 31940301 31940350 -152348312 + AT_rich Low_complexity Low_complexity 1 49 0 236 152 30 40 chr4 31940396 31940495 -152348167 + (TA)n Simple_repeat Simple_repeat 1 98 0 24 0 0 0 chr4 31940508 31940532 -152348130 + AT_rich Low_complexity Low_complexity 1 24 0 2488 66 0 0 chr4 31940533 31940838 -152347824 + AluY SINE Alu 1 305 -6 213 273 18 18 chr4 31940878 31940933 -152347729 - MIR SINE MIR -63 145 91 414 304 9 9 chr4 31941444 31941559 -152347103 - MIR3 SINE MIR -11 197 83 1460 203 0 30 chr4 31941626 31941897 -152346765 + AluJb SINE Alu 1 263 -49 293 229 16 0 chr4 31941927 31941988 -152346674 - MER81 DNA DNA -52 62 1 227 260 20 0 chr4 31942116 31942166 -152346496 + L2 LINE L2 3263 3313 0 351 272 119 55 chr4 31943246 31943448 -152345214 - MIR SINE MIR 0 262 48 199 340 0 20 chr4 31943960 31944010 -152344652 - L2 LINE L2 -86 3186 3138 204 211 0 0 chr4 31944141 31944179 -152344483 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 268 335 102 36 chr4 31944529 31944804 -152343858 - L2 LINE L2 -598 2716 2424 403 288 91 8 chr4 31945566 31945698 -152342964 - MIR3 SINE MIR -7 201 59 6628 223 32 38 chr4 31945815 31945916 -152342746 - L1MB1 LINE L1 -14 5999 5899 2349 98 0 0 chr4 31945916 31946213 -152342449 - AluSq SINE Alu -16 297 1 6628 223 32 38 chr4 31946213 31946891 -152341771 - L1MB1 LINE L1 -114 5899 5219 2207 103 31 0 chr4 31946891 31947182 -152341480 - AluSq SINE Alu -13 300 1 6628 223 32 38 chr4 31947182 31949210 -152339452 - L1MB1 LINE L1 -794 5219 3203 1482 259 70 2 chr4 31949212 31949725 -152338937 - L1MB1 LINE L1 -4668 1223 676 813 304 34 52 chr4 31949912 31950300 -152338362 - L1MB1 LINE L1 -5507 384 4 527 156 52 0 chr4 31950374 31950470 -152338192 - HY1 scRNA scRNA -5 107 7 804 290 71 12 chr4 31950529 31950867 -152337795 - LTR16C LTR ERVL 0 491 134 1060 261 117 52 chr4 31951290 31951981 -152336681 + L2 LINE L2 2557 3313 0 675 298 50 30 chr4 31952132 31952460 -152336202 + L3 LINE CR1 1198 1576 -1 2534 37 20 0 chr4 31952784 31953081 -152335581 + AluY SINE Alu 1 303 -8 208 318 0 0 chr4 31953265 31953328 -152335334 - MER5A DNA MER1_type -83 106 44 2313 102 6 10 chr4 31954013 31954327 -152334335 + AluSq SINE Alu 1 313 0 368 303 46 14 chr4 31955026 31955569 -152333093 + L1ME4a LINE L1 5485 6119 -2 257 276 26 0 chr4 31955811 31955887 -152332775 - MLT1I LTR MaLR -13 396 319 3022 36 6 0 chr4 31955929 31956293 -152332369 - L1PA4 LINE L1 0 6155 5790 6775 47 10 8 chr4 31956395 31957309 -152331353 - L1P LINE L1 -2569 3577 2659 2106 112 0 3 chr4 31957309 31957594 -152331068 - AluSq SINE Alu -29 284 1 6775 47 10 8 chr4 31957594 31957615 -152331047 - L1P LINE L1 -3487 2659 2640 282 300 208 0 chr4 31957739 31957869 -152330793 - MLT1I LTR MaLR -249 160 4 316 228 76 11 chr4 31959281 31959373 -152329289 + MLT1L LTR MaLR 1 98 -517 406 277 116 40 chr4 31959522 31959800 -152328862 + MLT1J LTR MaLR 224 602 -13 2218 167 86 2 chr4 31959800 31960195 -152328467 + MSTC LTR MaLR 1 428 0 406 277 116 40 chr4 31960195 31960211 -152328451 + MLT1J LTR MaLR 602 615 0 569 366 88 12 chr4 31960222 31960686 -152327976 + L2 LINE L2 2514 3018 -254 * 622 283 158 22 chr4 31960678 31961000 -152327662 - L2 LINE L2 -870 2444 2079 397 356 0 0 chr4 31961061 31961179 -152327483 + L2 LINE L2 3150 3267 -5 632 265 53 97 chr4 31961539 31962085 -152326577 - MER34 LTR ERV1 0 542 20 2531 107 3 27 chr4 31962085 31962458 -152326204 - THE1B LTR MaLR 0 364 1 632 265 53 97 chr4 31962458 31962478 -152326184 - MER34 LTR ERV1 -522 20 1 530 158 0 11 chr4 31962590 31962684 -152325978 + MLT1B LTR MaLR 1 93 -297 2399 136 24 24 chr4 31962684 31963103 -152325559 - MSTC LTR MaLR 0 428 10 1042 195 62 33 chr4 31963112 31963474 -152325188 + MLT1B LTR MaLR 89 390 0 207 275 18 64 chr4 31963475 31963584 -152325078 - MIR SINE MIR -72 190 87 1285 249 80 56 chr4 31963736 31964274 -152324388 - MLT1E LTR MaLR -7 586 36 409 210 129 32 chr4 31964290 31964414 -152324248 - MIR SINE MIR -125 137 2 978 226 37 5 chr4 31964560 31964777 -152323885 - MER58A DNA MER1_type 0 224 1 7465 33 2 0 chr4 31965447 31967064 -152321598 + L1PA3 LINE L1 4536 6155 0 220 103 23 92 chr4 31967295 31967382 -152321280 + (TTATA)n Simple_repeat Simple_repeat 1 81 0 21 36 0 0 chr4 31967553 31967581 -152321081 + AT_rich Low_complexity Low_complexity 1 28 0 1383 149 5 5 chr4 31968647 31968868 -152319794 + AluSg/x SINE Alu 84 304 -8 393 247 240 32 chr4 31969127 31969281 -152319381 + MER5A DNA MER1_type 4 189 0 267 245 94 50 chr4 31969485 31969644 -152319018 + HAL1b LINE L1 748 913 -435 300 282 9 45 chr4 31969687 31969797 -152318865 + HAL1b LINE L1 797 902 -446 665 155 0 8 chr4 31970604 31970737 -152317925 + L1MC2 LINE L1 5981 6116 -221 1366 183 125 12 chr4 31971467 31971795 -152316867 - MLT1A1 LTR MaLR 0 365 1 2647 144 2 7 chr4 31971931 31972367 -152316295 - MER57B LTR ERV1 0 434 1 407 222 20 10 chr4 31973462 31973561 -152315101 - MIR SINE MIR -39 223 124 217 295 0 0 chr4 31973556 31973617 -152315045 + MIR SINE MIR 94 154 -108 * 22 0 0 0 chr4 31973631 31973653 -152315009 + AT_rich Low_complexity Low_complexity 1 22 0 1726 47 9 9 chr4 31973653 31973866 -152314796 + AluY SINE Alu 91 303 -8 246 32 0 0 chr4 31973867 31973898 -152314764 + (TA)n Simple_repeat Simple_repeat 2 32 0 1266 274 63 61 chr4 31974942 31975050 -152313612 + MLT1E LTR MaLR 5 111 -482 2961 160 41 8 chr4 31975050 31975586 -152313076 + MER41C LTR ERV1 1 554 0 1266 274 63 61 chr4 31975586 31975665 -152312997 + MLT1E LTR MaLR 111 188 -405 2135 116 27 3 chr4 31975665 31975966 -152312696 - AluSq SINE Alu 0 313 6 1266 274 63 61 chr4 31975966 31976365 -152312297 + MLT1E LTR MaLR 188 593 0 39 22 0 0 chr4 31976420 31976466 -152312196 + AT_rich Low_complexity Low_complexity 1 46 0 2002 129 7 0 chr4 31976477 31976757 -152311905 - AluSx SINE Alu -30 282 1 27 0 0 0 chr4 31976891 31976918 -152311744 + AT_rich Low_complexity Low_complexity 1 27 0 326 347 47 35 chr4 31977013 31977183 -152311479 - MIR3 SINE MIR -32 176 5 183 273 30 30 chr4 31978169 31978235 -152310427 + L2 LINE L2 2995 3060 -212 376 323 114 6 chr4 31978296 31978454 -152310208 + MIR SINE MIR 2 176 -86 553 299 70 15 chr4 31978512 31978713 -152309949 - MIR SINE MIR -19 243 32 3839 181 32 17 chr4 31979581 31980754 -152307908 + L1MB4 LINE L1 4919 6109 -71 23 0 0 0 chr4 31980766 31980789 -152307873 + AT_rich Low_complexity Low_complexity 1 23 0 2018 117 0 4 chr4 31981818 31982092 -152306570 + AluSx SINE Alu 29 301 -11 186 103 0 0 chr4 31982302 31982331 -152306331 + (TGAA)n Simple_repeat Simple_repeat 4 32 0 208 339 61 74 chr4 31983041 31983271 -152305391 + MIR SINE MIR 25 251 -11 227 296 23 45 chr4 31983277 31983365 -152305297 - MIR SINE MIR -155 107 22 1536 162 52 11 chr4 31984248 31984612 -152304050 - MER3 DNA MER1_type 0 2624 2246 280 169 84 12 chr4 31984620 31984703 -152303959 - MER3 DNA MER1_type -41 168 80 704 263 67 10 chr4 31986307 31986516 -152302146 - MIR SINE MIR -25 237 17 385 188 157 133 chr4 31986524 31986578 -152302084 + HAL1b LINE L1 580 631 -717 1590 187 96 3 chr4 31986578 31986910 -152301752 + MLT1A1 LTR MaLR 1 363 -2 385 188 157 133 chr4 31986910 31986991 -152301671 + HAL1b LINE L1 631 709 -639 1928 172 0 7 chr4 31986991 31987293 -152301369 + AluJb SINE Alu 9 308 -4 846 78 0 0 chr4 31987301 31987416 -152301246 + (GGAA)n Simple_repeat Simple_repeat 3 117 0 385 188 157 133 chr4 31987416 31987690 -152300972 + HAL1b LINE L1 715 1009 -339 230 307 0 11 chr4 31988179 31988267 -152300395 - MLT1I LTR MaLR -236 173 87 467 262 12 30 chr4 31988985 31989149 -152299513 - MER97a DNA MER1_type? -732 162 2 3251 286 69 14 chr4 31989177 31990505 -152298157 + L2 LINE L2 1746 3146 -167 227 224 45 0 chr4 31990530 31990597 -152298065 - L1M4 LINE L1 -2242 3904 3835 644 204 67 80 chr4 31990638 31990863 -152297799 + L2 LINE L2 3092 3313 0 2292 146 48 26 chr4 31991041 31991459 -152297203 - MSTA LTR MaLR -1 427 1 696 307 14 5 chr4 31992200 31992415 -152296247 + MIR SINE MIR 46 262 0 188 83 0 28 chr4 31992530 31992566 -152296096 + (CAAAA)n Simple_repeat Simple_repeat 5 39 0 445 285 42 7 chr4 31993320 31993464 -152295198 + MIR SINE MIR 46 194 -68 966 205 51 9 chr4 31993759 31993974 -152294688 - MLT1C LTR MaLR 0 467 244 911 191 37 48 chr4 31993982 31994289 -152294373 - MLT1B LTR MaLR -155 235 1 627 42 32 0 chr4 31994450 31994545 -152294117 + (TCTA)n Simple_repeat Simple_repeat 4 101 0 21 36 0 0 chr4 31995815 31995843 -152292819 + AT_rich Low_complexity Low_complexity 1 28 0 342 0 0 0 chr4 31997238 31997276 -152291386 + (TTA)n Simple_repeat Simple_repeat 3 40 0 3388 57 4 50 chr4 31997277 31997755 -152290907 - L1PA7 LINE L1 -19 6135 5680 22 0 0 0 chr4 31997930 31997952 -152290710 + AT_rich Low_complexity Low_complexity 1 22 0 382 244 23 0 chr4 31998068 31998154 -152290508 + L2 LINE L2 3222 3309 -4 1386 189 85 74 chr4 31998876 31999335 -152289327 + MER31B LTR ERV1 3 466 0 198 0 0 0 chr4 31999568 31999590 -152289072 + (T)n Simple_repeat Simple_repeat 1 22 0 208 163 0 23 chr4 32000790 32000833 -152287829 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 180 0 0 0 chr4 32001729 32001749 -152286913 + (TTA)n Simple_repeat Simple_repeat 2 21 0 26 0 0 0 chr4 32002253 32002279 -152286383 + AT_rich Low_complexity Low_complexity 1 26 0 234 0 0 0 chr4 32003308 32003334 -152285328 + (T)n Simple_repeat Simple_repeat 1 26 0 25 31 0 0 chr4 32003450 32003482 -152285180 + AT_rich Low_complexity Low_complexity 1 32 0 237 250 28 28 chr4 32004126 32004198 -152284464 - MIR3 SINE MIR -18 190 119 921 143 42 37 chr4 32004412 32004601 -152284061 + THE1C LTR MaLR 1 190 -185 530 164 214 50 chr4 32004736 32004895 -152283767 + THE1C LTR MaLR 180 364 0 516 277 54 127 chr4 32005527 32006098 -152282564 - L2 LINE L2 -1 3312 2791 1233 221 178 72 chr4 32006098 32006586 -152282076 + MLT1F LTR MaLR 1 540 -2 516 277 54 127 chr4 32006586 32006620 -152282042 - L2 LINE L2 -522 2791 2756 2002 140 0 41 chr4 32006948 32007262 -152281400 - AluSx SINE Alu -11 301 1 624 148 0 52 chr4 32007861 32007996 -152280666 - L1MA9 LINE L1 -300 6012 5885 337 294 32 121 chr4 32009165 32009447 -152279215 + MIR SINE MIR 6 262 0 263 263 0 0 chr4 32010295 32010352 -152278310 - L2 LINE L2 0 3313 3257 310 376 31 12 chr4 32010816 32010978 -152277684 + L2 LINE L2 2611 2775 -539 481 313 101 10 chr4 32012032 32012230 -152276432 - MIR SINE MIR -28 234 19 22 56 0 0 chr4 32013648 32013684 -152274978 + AT_rich Low_complexity Low_complexity 1 36 0 337 268 62 0 chr4 32014866 32014963 -152273699 - MIR SINE MIR 0 262 160 6283 31 2 0 chr4 32015818 32016897 -152271765 - L1P2 LINE L1 -478 5677 4598 633 221 11 33 chr4 32016997 32017178 -152271484 + L1MC1 LINE L1 6138 6314 -19 1652 182 18 0 chr4 32017264 32017550 -152271112 - AluJo SINE Alu -21 291 1 1796 160 0 36 chr4 32017580 32017699 -152270963 + AluSx SINE Alu 1 123 -189 2136 134 3 13 chr4 32017699 32018006 -152270656 - AluSq SINE Alu -9 304 1 1796 160 0 36 chr4 32018006 32018192 -152270470 + AluSx SINE Alu 123 295 -17 312 278 11 0 chr4 32018485 32018575 -152270087 - MER117 DNA MER1_type -40 157 67 2076 144 36 30 chr4 32019869 32020231 -152268431 - THE1B LTR MaLR 0 364 1 503 113 14 0 chr4 32020482 32020553 -152268109 + AluS SINE Alu 3 74 -239 421 330 39 17 chr4 32020855 32021034 -152267628 + L3b LINE CR1 1283 1465 -118 2218 111 0 10 chr4 32021685 32021982 -152266680 + AluSx SINE Alu 1 294 -18 469 246 91 69 chr4 32021994 32022123 -152266539 + MLT1J1 LTR MaLR 8 148 -302 643 240 44 16 chr4 32022123 32022306 -152266356 + MER5A DNA MER1_type 2 189 0 469 246 91 69 chr4 32022306 32022398 -152266264 + MLT1J1 LTR MaLR 148 237 -213 281 321 6 6 chr4 32022833 32022947 -152265715 + MIR SINE MIR 46 159 -49 183 313 192 28 chr4 32022936 32023150 -152265512 - L2 LINE L2 -74 3239 2991 * 1109 253 29 12 chr4 32023574 32023989 -152264673 - L1MCc LINE L1 -3593 3348 2927 845 277 42 40 chr4 32023992 32024512 -152264150 - L1MCc LINE L1 -4191 2931 2411 635 285 80 36 chr4 32024515 32025235 -152263427 - L1MCc LINE L1 -4887 1536 1129 572 311 59 50 chr4 32025544 32026000 -152262662 - L1MCc LINE L1 -5943 480 21 208 213 11 128 chr4 32027125 32027219 -152261443 + L2 LINE L2 3136 3218 -54 405 337 47 17 chr4 32027454 32027626 -152261036 + L2 LINE L2 3128 3304 -9 180 77 0 0 chr4 32027627 32027653 -152261009 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 676 288 64 13 chr4 32028287 32028520 -152260142 + LTR16A1 LTR ERVL 213 457 0 340 259 9 52 chr4 32029449 32029565 -152259097 + MLT1L LTR MaLR 90 200 -415 342 330 51 35 chr4 32029622 32029819 -152258843 - L3 LINE CR1 -551 1026 827 2273 92 0 32 chr4 32030554 32030870 -152257792 + AluSx SINE Alu 4 309 -3 304 317 10 39 chr4 32030928 32031136 -152257526 + L1ME LINE L1 5143 5344 -802 340 312 68 44 chr4 32031158 32031274 -152257388 + L1ME LINE L1 5366 5491 -671 1477 206 36 36 chr4 32031274 32031639 -152257023 + MLT1A1 LTR MaLR 1 365 0 340 312 68 44 chr4 32031639 32031727 -152256935 + L1ME LINE L1 5491 5575 -587 1250 165 5 0 chr4 32031743 32031943 -152256719 + AluJo SINE Alu 3 203 -109 345 100 36 45 chr4 32032243 32032353 -152256309 + (TA)n Simple_repeat Simple_repeat 2 110 0 319 320 65 20 chr4 32032356 32032556 -152256106 + L1ME LINE L1 5616 5824 -297 1065 275 67 26 chr4 32032588 32032930 -152255732 + L2 LINE L2 2958 3313 0 344 333 18 0 chr4 32032955 32033066 -152255596 + LTR16A LTR ERVL 338 450 0 759 189 0 0 chr4 32033145 32033272 -152255390 + LTR16A LTR ERVL 241 367 -83 25 0 0 0 chr4 32034647 32034672 -152253990 + AT_rich Low_complexity Low_complexity 1 25 0 338 203 43 0 chr4 32035051 32035120 -152253542 - MLT-int LTR MaLR -988 747 676 3057 207 16 36 chr4 32035255 32035665 -152252997 - MLT1A2-int LTR MaLR -1075 660 267 2029 144 3 0 chr4 32035665 32035963 -152252699 - AluSx SINE Alu -8 304 6 3057 207 16 36 chr4 32035963 32036224 -152252438 - MLT1A2-int LTR MaLR -1468 267 2 1177 206 187 9 chr4 32036225 32036541 -152252121 - MLT1A2 LTR MaLR -2 372 1 216 158 0 0 chr4 32037443 32037481 -152251181 + (TG)n Simple_repeat Simple_repeat 1 38 0 1963 153 51 56 chr4 32037974 32038366 -152250296 + MLT1B LTR MaLR 1 390 0 835 200 48 0 chr4 32038901 32039046 -152249616 + FRAM SINE Alu 1 151 -25 736 259 175 37 chr4 32039918 32040404 -152248258 - MLT1H1 LTR MaLR -2 553 1 1949 170 7 58 chr4 32040434 32040845 -152247817 - MLT1B LTR MaLR 0 390 1 440 353 69 34 chr4 32041009 32041329 -152247333 + MLT1K LTR MaLR 194 524 -64 2100 131 0 28 chr4 32041558 32041879 -152246783 + AluSx SINE Alu 1 312 0 236 53 26 0 chr4 32041889 32041927 -152246735 + (TC)n Simple_repeat Simple_repeat 2 40 0 867 220 6 0 chr4 32042465 32042638 -152246024 + LTR47B LTR ERVL 1 174 -269 2023 226 155 44 chr4 32042763 32043670 -152244992 - MLT1A1-int LTR MaLR -229 1506 453 930 251 27 5 chr4 32043673 32043892 -152244770 - MLT1A1-int LTR MaLR -1510 225 2 1107 210 23 101 chr4 32043895 32044291 -152244371 - MLT1A1 LTR MaLR 0 365 1 747 223 43 103 chr4 32046753 32047103 -152241559 - MER68 LTR ERV1 -77 485 157 563 298 50 59 chr4 32047277 32047820 -152240842 - HAL1 LINE L1 -857 1650 1113 1333 300 134 29 chr4 32047824 32048342 -152240320 - L2 LINE L2 -43 3270 2808 1921 113 10 0 chr4 32048342 32048633 -152240029 - L1PA14 LINE L1 -4 6157 5864 1333 300 134 29 chr4 32048633 32049010 -152239652 - L2 LINE L2 -505 2808 2273 335 235 93 25 chr4 32049053 32049215 -152239447 - L1M4 LINE L1 -822 5324 5152 26 64 0 0 chr4 32049986 32050033 -152238629 + AT_rich Low_complexity Low_complexity 1 47 0 338 319 92 25 chr4 32050275 32050513 -152238149 - L1M4 LINE L1 -2742 3404 3151 27 29 0 0 chr4 32050851 32050885 -152237777 + AT_rich Low_complexity Low_complexity 1 34 0 1682 170 3 35 chr4 32051441 32051899 -152236763 - AluSx SINE Alu 0 452 4 393 245 53 32 chr4 32052268 32052478 -152236184 - L1MEd LINE L1 -4862 1257 1130 2143 96 3 25 chr4 32053212 32053526 -152235136 - AluSc SINE Alu 0 309 3 359 355 35 0 chr4 32053617 32053758 -152234904 + LTR33 LTR ERVL 51 196 -325 269 227 0 30 chr4 32053992 32054058 -152234604 + LTR33 LTR ERVL 458 521 0 27 0 0 0 chr4 32054127 32054154 -152234508 + AT_rich Low_complexity Low_complexity 1 27 0 481 289 72 119 chr4 32054298 32054851 -152233811 - L1MEd LINE L1 -5581 538 12 225 98 24 0 chr4 32056069 32056110 -152232552 + L1MC4a LINE L1 6133 6174 -1634 1617 189 7 26 chr4 32056133 32056439 -152232223 + AluJo SINE Alu 3 302 -10 787 294 82 23 chr4 32056870 32057383 -152231279 + L1MC4a LINE L1 1377 1919 -4621 1717 84 8 4 chr4 32057456 32057706 -152230956 + L1P LINE L1 4976 5226 -920 3336 38 9 7 chr4 32057719 32058140 -152230522 + L1PA8 LINE L1 5746 6167 -5 526 290 194 14 chr4 32058142 32058507 -152230155 + L1MC4a LINE L1 1963 2393 -4328 2057 278 71 18 chr4 32058599 32059795 -152228867 + L1MC4a LINE L1 3352 4611 -1929 29 28 0 0 chr4 32059939 32059975 -152228687 + AT_rich Low_complexity Low_complexity 1 36 0 346 263 39 39 chr4 32060539 32060820 -152227842 + L1MC4a LINE L1 6026 6194 -321 2104 177 30 13 chr4 32060826 32061222 -152227440 + MER57A LTR ERV1 1 403 0 810 216 44 20 chr4 32063158 32063362 -152225300 + MER3 DNA MER1_type 1 209 0 831 264 17 25 chr4 32063551 32063786 -152224876 - MIR SINE MIR 0 262 30 2196 102 0 0 chr4 32064530 32064814 -152223848 - AluSg SINE Alu -26 284 1 597 288 17 23 chr4 32065255 32065432 -152223230 + MLT1K LTR MaLR 290 465 -123 1731 101 0 0 chr4 32065660 32065878 -152222784 - AluSc SINE Alu -91 218 1 223 323 20 10 chr4 32066803 32066902 -152221760 - MIR SINE MIR 0 262 163 273 260 128 94 chr4 32067211 32067476 -152221186 - MLT1I LTR MaLR -8 401 128 366 304 174 13 chr4 32067564 32067794 -152220868 - MLT1J1 LTR MaLR -174 272 6 610 318 75 46 chr4 32067915 32068327 -152220335 + L2 LINE L2 2302 2725 -589 289 146 0 54 chr4 32069057 32069113 -152219549 - L1PB4 LINE L1 -2 6154 6105 2186 64 8 0 chr4 32071129 32071393 -152217269 - AluY SINE Alu -17 294 29 484 239 69 38 chr4 32072702 32072861 -152215801 - MIR3 SINE MIR -9 199 36 247 238 127 0 chr4 32073336 32073399 -152215263 - MIR SINE MIR -104 158 88 2239 104 0 3 chr4 32073650 32073959 -152214703 - AluY SINE Alu -3 308 1 367 343 99 37 chr4 32074069 32074451 -152214211 + L2 LINE L2 2550 2955 -359 2189 229 10 6 chr4 32074600 32075089 -152213573 + L1ME1 LINE L1 5433 5923 -243 1064 195 18 12 chr4 32075101 32075146 -152213516 - MER2 DNA MER2_type -9 336 293 22 35 0 0 chr4 32075146 32075175 -152213487 + AT_rich Low_complexity Low_complexity 1 29 0 1064 195 18 12 chr4 32075175 32075398 -152213264 - MER2 DNA MER2_type -52 293 3 512 258 20 48 chr4 32075430 32075685 -152212977 + L1MA10 LINE L1 5946 6334 0 575 289 127 38 chr4 32075952 32076291 -152212371 - MLT1J2 LTR MaLR 0 450 82 505 263 70 66 chr4 32076838 32077221 -152211441 + MLT1J LTR MaLR 27 476 -35 2101 132 3 0 chr4 32077785 32078081 -152210581 + AluSg SINE Alu 1 297 -13 246 278 61 91 chr4 32078268 32078466 -152210196 - MIR SINE MIR -50 212 21 581 281 44 0 chr4 32078536 32078727 -152209935 + MIR SINE MIR 15 213 -49 327 349 27 27 chr4 32079026 32079172 -152209490 - L2 LINE L2 0 3272 3127 402 320 33 28 chr4 32079802 32079983 -152208679 - MIR SINE MIR -78 184 3 283 280 28 28 chr4 32079999 32080106 -152208556 + L1P LINE L1 5318 5424 -742 878 232 21 11 chr4 32080118 32080308 -152208354 - MER58A DNA MER1_type -32 192 1 23 33 0 0 chr4 32080317 32080347 -152208315 + AT_rich Low_complexity Low_complexity 1 30 0 210 195 39 0 chr4 32080716 32080793 -152207869 + GA-rich Low_complexity Low_complexity 3 82 0 706 284 31 5 chr4 32081073 32081267 -152207395 + MIR SINE MIR 46 244 -18 2014 91 4 0 chr4 32081313 32081566 -152207096 + AluSx SINE Alu 1 254 -58 499 269 107 0 chr4 32081693 32081842 -152206820 + MIR SINE MIR 21 185 -77 422 320 33 0 chr4 32084198 32084351 -152204311 - MIR SINE MIR -58 204 47 1966 143 76 29 chr4 32086344 32086617 -152202045 + THE1B LTR MaLR 1 295 -69 2228 112 0 3 chr4 32086617 32086913 -152201749 - AluSg SINE Alu -15 295 1 1966 143 76 29 chr4 32086913 32086982 -152201680 + THE1B LTR MaLR 295 359 -5 934 279 54 54 chr4 32087096 32087455 -152201207 + MLT1G1 LTR MaLR 1 423 -172 195 286 48 16 chr4 32087562 32087625 -152201037 - MIR SINE MIR -121 87 23 430 233 98 15 chr4 32089085 32089218 -152199444 + MIR SINE MIR 30 173 -89 22 0 0 0 chr4 32089358 32089380 -152199282 + AT_rich Low_complexity Low_complexity 1 22 0 2241 123 7 0 chr4 32089410 32089720 -152198942 + AluSx SINE Alu 1 312 0 934 234 22 26 chr4 32091357 32091588 -152197074 - MIR SINE MIR -22 240 11 254 298 199 7 chr4 32091612 32091753 -152196909 - MIR SINE MIR -68 194 27 297 277 39 62 chr4 32091785 32091915 -152196747 + MIR SINE MIR 48 174 -88 2711 122 3 8 chr4 32092992 32093369 -152195293 - THE1C LTR MaLR 0 375 1 11108 107 20 39 chr4 32093369 32094396 -152194266 - THE1C-int LTR MaLR 0 1580 592 2291 115 0 6 chr4 32094396 32094708 -152193954 - AluSg SINE Alu 0 310 1 11108 107 20 39 chr4 32094708 32095290 -152193372 - THE1C-int LTR MaLR -988 592 1 2461 111 35 24 chr4 32095290 32095661 -152193001 - THE1C LTR MaLR 0 375 1 247 258 83 144 chr4 32095898 32096127 -152192535 - MLT1-int LTR MaLR -129 1242 1028 1975 219 20 67 chr4 32096959 32097470 -152191192 + MLT1D LTR MaLR 1 487 -18 2698 129 0 3 chr4 32097638 32098003 -152190659 - THE1B LTR MaLR 0 364 1 859 251 29 14 chr4 32098878 32099085 -152189577 + MER63A DNA MER1_type 1 210 0 3122 168 25 39 chr4 32099101 32099348 -152189314 + LTR69 LTR ERVL 1 250 -338 1945 156 64 22 chr4 32099348 32099708 -152188954 + THE1C LTR MaLR 1 375 0 3122 168 25 39 chr4 32099708 32099743 -152188919 + LTR69 LTR ERVL 250 284 -304 198 0 0 0 chr4 32099743 32099765 -152188897 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 3122 168 25 39 chr4 32099765 32100075 -152188587 + LTR69 LTR ERVL 284 586 -2 292 293 45 27 chr4 32101094 32101306 -152187356 + L1ME LINE L1 5656 5875 -287 232 344 90 8 chr4 32102923 32103045 -152185617 - MIR SINE MIR -100 162 31 180 97 0 0 chr4 32103089 32103120 -152185542 + (TATATG)n Simple_repeat Simple_repeat 4 34 0 185 311 94 57 chr4 32103390 32103496 -152185166 + L2 LINE L2 3199 3308 -5 522 285 140 0 chr4 32104268 32104475 -152184187 + MIR SINE MIR 1 236 -26 1699 207 3 0 chr4 32105669 32105964 -152182698 + AluJb SINE Alu 1 296 -16 356 163 35 23 chr4 32106357 32106443 -152182219 - L1ME4a LINE L1 -9 6112 6026 1839 226 0 29 chr4 32108040 32108416 -152180246 + MLT1A1 LTR MaLR 1 365 0 262 316 120 6 chr4 32108646 32108801 -152179861 + MIR SINE MIR 24 189 -62 1836 145 10 19 chr4 32109360 32109670 -152178992 - MER54B LTR ERVL 0 793 487 * 2119 181 11 8 chr4 32109669 32110033 -152178629 - MER54B LTR ERVL -428 365 1 694 279 110 53 chr4 32110329 32110666 -152177996 + MLT1J2 LTR MaLR 74 429 -21 4511 83 7 0 chr4 32110810 32111375 -152177287 - L1PA8 LINE L1 -3 6169 5601 263 288 0 0 chr4 32111450 32111516 -152177146 + CT-rich Low_complexity Low_complexity 1 66 0 387 348 30 73 chr4 32111516 32111749 -152176913 - L2 LINE L2 -21 3251 3029 183 42 0 0 chr4 32112125 32112149 -152176513 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 259 277 0 53 chr4 32112859 32112953 -152175709 - MIR SINE MIR -20 242 154 220 294 167 10 chr4 32113025 32113127 -152175535 + L2 LINE L2 3155 3272 0 1944 186 17 14 chr4 32114497 32114851 -152173811 + MLT1A1 LTR MaLR 10 364 -1 428 318 0 0 chr4 32114853 32114979 -152173683 - MIR SINE MIR -70 192 67 2218 238 61 23 chr4 32116106 32116714 -152171948 - MLT1E2 LTR MaLR 0 626 3 200 309 99 12 chr4 32116785 32116866 -152171796 - MIR SINE MIR -102 106 19 393 248 115 0 chr4 32116905 32117018 -152171644 - MIR SINE MIR -29 233 108 967 259 55 99 chr4 32117280 32117804 -152170858 + MER34 LTR ERV1 1 501 -41 1840 135 30 76 chr4 32117968 32118365 -152170297 - MER67C LTR ERV1 -242 272 1 557 269 58 53 chr4 32118540 32118919 -152169743 + L1ME4a LINE L1 5735 6115 -6 322 266 32 0 chr4 32119299 32119393 -152169269 + L3 LINE CR1 1392 1488 -89 396 158 0 0 chr4 32119708 32119784 -152168878 + GA-rich Low_complexity Low_complexity 2 77 0 501 309 68 20 chr4 32120840 32121089 -152167573 - MIR SINE MIR 0 262 2 4537 156 86 28 chr4 32121374 32122155 -152166507 - LTR1B LTR ERV1 0 826 1 2298 197 49 33 chr4 32122208 32122720 -152165942 + MLT2B1 LTR ERVL 1 520 0 184 286 18 18 chr4 32122731 32122787 -152165875 + L2 LINE L2 3213 3268 -4 417 290 226 4 chr4 32123137 32123389 -152165273 - L2 LINE L2 -1 3312 3005 320 349 58 21 chr4 32124045 32124234 -152164428 - MIR SINE MIR -19 243 48 481 273 56 19 chr4 32124755 32124916 -152163746 + MIR3 SINE MIR 27 193 -15 342 313 9 9 chr4 32125208 32125323 -152163339 + MIR SINE MIR 100 214 -48 1159 174 18 54 chr4 32125411 32125635 -152163027 + MER20 DNA MER1_type 4 219 0 845 293 87 44 chr4 32127024 32127437 -152161225 - L2 LINE L2 -1 3312 2882 442 309 39 17 chr4 32127716 32127897 -152160765 - MIR SINE MIR -39 223 39 2320 152 31 3 chr4 32128862 32129217 -152159445 - MLT1A1 LTR MaLR 0 365 1 420 264 22 0 chr4 32129789 32129895 -152158767 + MIR SINE MIR 42 156 -52 190 394 8 16 chr4 32131049 32131176 -152157486 - MIR SINE MIR -67 141 16 198 103 0 0 chr4 32131937 32131966 -152156696 + (GGGA)n Simple_repeat Simple_repeat 4 32 0 390 331 40 13 chr4 32132845 32132996 -152155666 - MIR SINE MIR 0 262 108 502 265 76 68 chr4 32133176 32133425 -152155237 - MLT1K LTR MaLR -43 545 295 2094 126 80 37 chr4 32133446 32133795 -152154867 - THE1B LTR MaLR 0 364 1 223 259 0 0 chr4 32134083 32134137 -152154525 + MIR3 SINE MIR 143 196 -12 267 31 0 0 chr4 32135232 32135264 -152153398 + (TA)n Simple_repeat Simple_repeat 2 33 0 2166 105 0 0 chr4 32135264 32135549 -152153113 - AluSq SINE Alu -28 285 1 2250 111 0 0 chr4 32135767 32136064 -152152598 + AluSx SINE Alu 1 297 -15 209 186 0 0 chr4 32136410 32136453 -152152209 + (TGAG)n Simple_repeat Simple_repeat 2 44 0 28 79 0 0 chr4 32138311 32138374 -152150288 + AT_rich Low_complexity Low_complexity 1 63 0 220 259 185 0 chr4 32138942 32139023 -152149639 + MIR SINE MIR 117 212 -50 251 299 34 95 chr4 32139590 32139737 -152148925 - MIR SINE MIR -74 188 51 211 212 96 123 chr4 32140054 32140200 -152148462 + MIR SINE MIR 103 244 -18 1716 191 82 9 chr4 32140677 32141017 -152147645 - MLT1A1 LTR MaLR 0 365 1 308 297 104 25 chr4 32141867 32142069 -152146593 - MIR SINE MIR -12 250 33 270 0 0 0 chr4 32142141 32142171 -152146491 + (TC)n Simple_repeat Simple_repeat 1 30 0 183 129 0 0 chr4 32142822 32142853 -152145809 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 31 0 0 0 chr4 32143286 32143317 -152145345 + AT_rich Low_complexity Low_complexity 1 31 0 338 250 25 0 chr4 32143418 32143498 -152145164 + MLT1L LTR MaLR 195 276 -339 189 243 140 37 chr4 32144796 32144903 -152143759 + MIR3 SINE MIR 90 207 -1 412 300 8 8 chr4 32145391 32145521 -152143141 + MER94 DNA DNA 2 131 -3 180 269 54 43 chr4 32145660 32145753 -152142909 - L3 LINE CR1 -80 1497 1404 711 219 72 75 chr4 32146618 32146757 -152141905 + MLT1J2 LTR MaLR 3 142 -308 2019 140 7 3 chr4 32146757 32147057 -152141605 - AluSx SINE Alu -11 301 1 711 219 72 75 chr4 32147057 32147182 -152141480 + MLT1J2 LTR MaLR 142 266 -184 1006 189 49 0 chr4 32147196 32147381 -152141281 + MER58A DNA MER1_type 12 205 -19 272 217 50 0 chr4 32147440 32147500 -152141162 - MLT1J2 LTR MaLR -129 321 259 283 229 57 0 chr4 32147653 32147723 -152140939 + MLT1J2 LTR MaLR 346 419 -31 310 200 40 27 chr4 32149923 32149998 -152138664 - MER116 DNA Mariner -4 76 1 310 258 55 55 chr4 32150086 32150214 -152138448 + MIR SINE MIR 20 147 -115 219 225 188 0 chr4 32150413 32150493 -152138169 - L2 LINE L2 -6 3266 3172 323 352 120 0 chr4 32151458 32151600 -152137062 - MIR3 SINE MIR -48 160 2 858 282 95 14 chr4 32151752 32152121 -152136541 - MLT1L LTR MaLR -40 575 177 303 274 65 48 chr4 32152861 32152985 -152135677 + MIR SINE MIR 20 145 -117 219 103 0 0 chr4 32152991 32153030 -152135632 + (A)n Simple_repeat Simple_repeat 1 39 0 722 179 0 133 chr4 32153168 32153386 -152135276 + MER53 DNA DNA 1 189 0 22 0 0 0 chr4 32154084 32154106 -152134556 + AT_rich Low_complexity Low_complexity 1 22 0 2026 129 0 19 chr4 32155810 32156120 -152132542 - AluSq SINE Alu -7 306 3 207 146 0 0 chr4 32156538 32156579 -152132083 + (GA)n Simple_repeat Simple_repeat 1 41 0 712 322 83 44 chr4 32157106 32157541 -152131121 - L3 LINE CR1 -1 1576 1125 434 346 54 10 chr4 32157595 32157800 -152130862 - MIR SINE MIR -44 218 5 228 350 0 12 chr4 32157839 32157919 -152130743 - L3 LINE CR1 -488 1089 1011 251 54 0 27 chr4 32158114 32158151 -152130511 + Alu SINE Alu 1 36 -266 1452 121 0 19 chr4 32158663 32158878 -152129784 + AluSg/x SINE Alu 80 290 -20 185 0 40 0 chr4 32158884 32158909 -152129753 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1775 77 0 17 chr4 32159046 32159281 -152129381 - AluSg/x SINE Alu 0 312 82 291 125 71 18 chr4 32160009 32160065 -152128597 + MLT1D LTR MaLR 426 484 -21 1916 147 3 7 chr4 32160169 32160461 -152128201 - AluJo SINE Alu -21 291 1 300 253 51 108 chr4 32160516 32160674 -152127988 + MER5A DNA MER1_type 29 188 -1 2350 172 93 25 chr4 32160690 32161149 -152127513 - MLT1D LTR MaLR 0 505 12 1991 171 33 28 chr4 32161149 32161511 -152127151 - THE1B LTR MaLR 0 364 1 2350 172 93 25 chr4 32161511 32161523 -152127139 - MLT1D LTR MaLR -493 12 2 620 196 0 0 chr4 32162449 32162556 -152126106 - MLT1A2 LTR MaLR -4 370 264 277 191 48 16 chr4 32162558 32162621 -152126041 - MLT1A2 LTR MaLR -309 65 1 735 294 39 57 chr4 32163138 32163523 -152125139 - LTR16B LTR ERVL -86 378 1 201 132 0 0 chr4 32163654 32163692 -152124970 + (TCCCC)n Simple_repeat Simple_repeat 5 42 0 224 154 19 0 chr4 32164217 32164269 -152124393 + (TAAA)n Simple_repeat Simple_repeat 3 55 0 1444 237 69 37 chr4 32164463 32164838 -152123824 - MSTD LTR MaLR -4 392 6 288 365 29 0 chr4 32164846 32164983 -152123679 + MIR3 SINE MIR 37 177 -31 183 242 106 30 chr4 32165582 32165648 -152123014 - L2 LINE L2 -16 3256 3186 860 227 66 110 chr4 32166425 32166953 -152121709 - MLT1D LTR MaLR 0 505 1 234 318 40 32 chr4 32167112 32167238 -152121424 + L2 LINE L2 2708 2834 -480 420 158 1 0 chr4 32167259 32167337 -152121325 + L1M2 LINE L1 5464 5545 -579 1742 161 192 8 chr4 32167338 32167692 -152120970 + MSTA LTR MaLR 2 420 -8 1416 82 16 0 chr4 32167693 32167876 -152120786 + L1M2 LINE L1 5539 5724 -576 244 293 13 0 chr4 32168180 32168255 -152120407 + L2 LINE L2 3235 3310 -3 44127 31 21 1 chr4 32169098 32175130 -152113532 - L1PA2 LINE L1 0 6155 1 4831 105 7 50 chr4 32175746 32176470 -152112192 - L1PA11 LINE L1 0 6174 5482 4253 160 52 33 chr4 32176583 32177385 -152111277 + L1MB1 LINE L1 5303 6123 -45 2407 55 0 48 chr4 32177385 32177695 -152110967 + AluY SINE Alu 1 295 -16 4253 160 52 33 chr4 32177695 32177737 -152110925 + L1MB1 LINE L1 6123 6163 -5 296 271 35 83 chr4 32179154 32179298 -152109364 - MER5A DNA MER1_type -1 188 52 710 307 40 80 chr4 32179617 32179814 -152108848 + L2 LINE L2 2804 3007 -306 2313 91 10 0 chr4 32179814 32180112 -152108550 - AluSc SINE Alu -8 301 1 710 307 40 80 chr4 32180112 32180387 -152108275 + L2 LINE L2 3007 3257 -56 710 194 145 54 chr4 32180734 32180920 -152107742 - MIR SINE MIR -9 253 51 822 308 43 69 chr4 32181058 32181519 -152107143 - LTR67 LTR ERVL 0 557 109 906 236 90 97 chr4 32182120 32182696 -152105966 + Charlie8 DNA MER1_type 87 658 -1759 2048 196 27 46 chr4 32182919 32183393 -152105269 + MLT1C LTR MaLR 3 467 0 21 36 0 0 chr4 32184238 32184266 -152104396 + AT_rich Low_complexity Low_complexity 1 28 0 805 251 89 52 chr4 32184973 32185526 -152103136 - L1ME3 LINE L1 -332 5830 5258 1532 188 4 11 chr4 32185537 32185803 -152102859 - AluJo SINE Alu -48 264 1 1260 299 116 30 chr4 32185866 32187341 -152101321 - L1ME3 LINE L1 -946 5200 3600 3099 147 0 8 chr4 32187406 32187896 -152100766 - L1PA16 LINE L1 -11 6155 5670 2381 152 26 5 chr4 32187896 32188466 -152100196 + L1PA16 LINE L1 5081 5660 -506 392 283 132 46 chr4 32189362 32189416 -152099246 - L1ME3 LINE L1 -2953 3193 3145 694 182 0 38 chr4 32189416 32189548 -152099114 - FLAM_C SINE Alu -2 131 5 392 283 132 46 chr4 32189548 32189797 -152098865 - L1ME3 LINE L1 -3001 3145 2864 548 256 8 0 chr4 32189866 32189995 -152098667 + MIR SINE MIR 123 252 -10 1909 123 25 7 chr4 32190009 32190286 -152098376 - AluSx SINE Alu -30 282 1 24 67 0 0 chr4 32190897 32190942 -152097720 + AT_rich Low_complexity Low_complexity 1 45 0 497 332 10 48 chr4 32190967 32191175 -152097487 - MIR SINE MIR -55 207 8 265 293 112 17 chr4 32191426 32191542 -152097120 - MIR SINE MIR -129 133 7 288 348 70 37 chr4 32191703 32191890 -152096772 - MIR SINE MIR -51 211 19 1302 271 68 58 chr4 32192443 32192960 -152095702 - MLT1F LTR MaLR -2 540 19 417 292 60 32 chr4 32192969 32193219 -152095443 + L1MEd LINE L1 560 816 -5303 885 294 86 10 chr4 32193277 32193662 -152095000 + HAL1 LINE L1 101 514 -1993 8859 166 6 29 chr4 32193681 32194464 -152094198 + L1P5 LINE L1 3469 4268 -1883 2332 119 0 0 chr4 32194464 32194776 -152093886 + AluSx SINE Alu 1 312 0 8859 166 6 29 chr4 32194776 32196366 -152092296 + L1P5 LINE L1 4268 5784 -367 307 250 10 62 chr4 32196369 32196465 -152092197 - L1MC4 LINE L1 -1340 6702 6612 326 204 27 20 chr4 32196465 32196612 -152092050 + (TA)n Simple_repeat Simple_repeat 1 148 0 2636 105 0 0 chr4 32196666 32197036 -152091626 + L1PB1 LINE L1 5782 6151 0 1730 229 103 28 chr4 32197140 32197722 -152090940 - MLT1E2 LTR MaLR -3 623 11 293 284 59 0 chr4 32198100 32198202 -152090460 - MLT1J2 LTR MaLR -289 161 54 1498 267 44 47 chr4 32198713 32199305 -152089357 + MLT1G LTR MaLR 1 590 0 308 200 111 11 chr4 32199308 32199398 -152089264 + MLT1G-int LTR MaLR 4 102 -1269 256 335 45 25 chr4 32199435 32199677 -152088985 + MLT1G-int LTR MaLR 290 536 -835 250 352 0 0 chr4 32200104 32200192 -152088470 + MLT1G-int LTR MaLR 790 877 -494 2192 99 85 46 chr4 32200516 32200928 -152087734 + MSTA LTR MaLR 1 428 0 276 325 44 9 chr4 32201025 32201139 -152087523 + MLT1G-int LTR MaLR 1253 1370 -1 954 236 101 63 chr4 32201141 32201549 -152087113 + MLT1G LTR MaLR 5 496 -94 2266 158 75 0 chr4 32201549 32201947 -152086715 - MSTC LTR MaLR 0 428 1 954 236 101 63 chr4 32201947 32202046 -152086616 + MLT1G LTR MaLR 496 590 0 1895 175 40 13 chr4 32202255 32202632 -152086030 - MLT1B LTR MaLR -2 388 2 226 179 15 15 chr4 32202689 32202756 -152085906 + (TCTA)n Simple_repeat Simple_repeat 3 69 0 1108 263 87 21 chr4 32205072 32205733 -152082929 + L1ME3 LINE L1 4963 5668 -494 710 220 89 50 chr4 32205713 32205972 -152082690 + L1ME3 LINE L1 5886 6154 -8 * 2048 233 70 11 chr4 32205988 32206515 -152082147 + MER74A LTR ERVL 1 558 0 237 132 0 0 chr4 32206899 32206937 -152081725 + (GGAA)n Simple_repeat Simple_repeat 3 40 0 1587 180 3 41 chr4 32207230 32207524 -152081138 + AluJo SINE Alu 3 285 -27 1945 52 0 4 chr4 32207859 32208107 -152080555 - L1PA5 LINE L1 -2 6152 5906 846 221 47 148 chr4 32208112 32208620 -152080042 - MER110 LTR ERV1 -11 457 1 2399 133 5 19 chr4 32209384 32209753 -152078909 + THE1B LTR MaLR 1 364 0 11179 96 1 66 chr4 32209753 32210123 -152078539 + THE1B-int LTR MaLR 1 393 -1187 667 105 11 0 chr4 32210123 32210289 -152078373 - AluY SINE Alu 0 354 188 11179 96 1 66 chr4 32210289 32211511 -152077151 + THE1B-int LTR MaLR 393 1579 -1 2250 122 28 19 chr4 32211512 32211873 -152076789 + THE1B LTR MaLR 1 364 0 333 198 72 18 chr4 32211916 32212027 -152076635 + L1ME3 LINE L1 6037 6153 -9 971 276 94 10 chr4 32212029 32212326 -152076336 + MER74B LTR ERVL 48 369 -253 23 68 0 0 chr4 32213269 32213313 -152075349 + AT_rich Low_complexity Low_complexity 1 44 0 745 276 11 0 chr4 32213403 32213588 -152075074 - MER58A DNA MER1_type -37 187 1 1614 170 16 52 chr4 32214321 32214627 -152074035 - AluJb SINE Alu -17 295 1 5070 62 3 0 chr4 32214879 32215524 -152073138 - L1PA8 LINE L1 -9 6163 5517 21 57 0 0 chr4 32215580 32215615 -152073047 + AT_rich Low_complexity Low_complexity 1 35 0 257 311 19 75 chr4 32215625 32215755 -152072907 + MER5B DNA MER1_type 54 188 -1 458 331 63 44 chr4 32216660 32217025 -152071637 - L1MCa LINE L1 -4639 1787 1416 1134 241 134 18 chr4 32217075 32217619 -152071043 - L1M4 LINE L1 -1754 4392 3786 739 357 45 34 chr4 32217683 32218322 -152070340 - L1MCa LINE L1 -5631 976 331 23 0 0 0 chr4 32218516 32218539 -152070123 + AT_rich Low_complexity Low_complexity 1 23 0 357 375 58 8 chr4 32220524 32220764 -152067898 - L1M4 LINE L1 -1876 4270 4019 22 0 0 0 chr4 32220784 32220806 -152067856 + AT_rich Low_complexity Low_complexity 1 22 0 444 323 92 57 chr4 32220971 32221780 -152066882 - L1M4 LINE L1 -2375 3771 2935 1784 171 61 6 chr4 32222041 32222385 -152066277 - MLT1A1 LTR MaLR 0 365 3 32 0 0 0 chr4 32222624 32222656 -152066006 + AT_rich Low_complexity Low_complexity 1 32 0 344 285 118 42 chr4 32223709 32223972 -152064690 + L1MEc LINE L1 1921 2203 -4193 536 296 92 12 chr4 32223990 32224416 -152064246 + L1MEc LINE L1 2184 2643 -3572 785 294 140 8 chr4 32224426 32225182 -152063480 + L1MEc LINE L1 3819 4674 -1541 2384 164 42 4 chr4 32225429 32225911 -152062751 + L1MB3 LINE L1 5682 6181 -2 186 71 0 0 chr4 32226080 32226108 -152062554 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 934 346 46 40 chr4 32226224 32226895 -152061767 - L2 LINE L2 -2351 963 289 7352 30 8 0 chr4 32226956 32227839 -152060823 - L1PA3 LINE L1 0 6155 5260 2561 205 34 33 chr4 32228091 32228736 -152059926 + L1MA10 LINE L1 5670 6315 -19 2234 65 0 14 chr4 32229003 32229280 -152059382 - AluY SINE Alu -8 303 31 286 315 56 37 chr4 32229789 32229951 -152058711 - MIR SINE MIR -45 217 53 415 335 49 65 chr4 32230644 32230889 -152057773 - MIR SINE MIR -10 252 12 249 61 0 0 chr4 32231073 32231106 -152057556 - MLT2F LTR ERVL 0 663 631 180 152 0 0 chr4 32231152 32231185 -152057477 + (TG)n Simple_repeat Simple_repeat 2 34 0 1203 217 53 45 chr4 32231194 32231531 -152057131 - MLT2C1 LTR ERVL -57 340 1 181 430 19 9 chr4 32231560 32231667 -152056995 - L2 LINE L2 -212 3060 2953 185 303 0 53 chr4 32231691 32231767 -152056895 + L2 LINE L2 3147 3218 -54 197 340 123 9 chr4 32232121 32232227 -152056435 - MIR SINE MIR -28 234 117 200 351 0 43 chr4 32232408 32232502 -152056160 + MIR SINE MIR 34 123 -85 1538 186 25 6 chr4 32232556 32232910 -152055752 - L1 LINE L1 -1579 4567 4207 4944 177 8 9 chr4 32232911 32233830 -152054832 + L1MA4 LINE L1 5373 6290 -10 468 226 161 26 chr4 32233912 32234067 -152054595 - MIR SINE MIR -6 256 81 304 258 125 16 chr4 32234893 32235077 -152053585 + L1ME LINE L1 5564 5762 -359 444 292 55 58 chr4 32235082 32235445 -152053217 + L1ME LINE L1 2469 2830 -3316 393 328 75 15 chr4 32235459 32235763 -152052899 + L1ME LINE L1 5241 5559 -562 260 252 149 19 chr4 32235834 32235941 -152052721 + L1ME LINE L1 5678 5798 -323 1915 153 33 81 chr4 32236109 32236354 -152052308 + MLT2A2 LTR ERVL 3 258 -296 2295 99 0 22 chr4 32236354 32236666 -152051996 - AluSx SINE Alu -7 305 1 1915 153 33 81 chr4 32236666 32236988 -152051674 + MLT2A2 LTR ERVL 258 554 0 209 105 35 35 chr4 32237158 32237215 -152051447 + CT-rich Low_complexity Low_complexity 4 60 0 1652 107 9 0 chr4 32237477 32237719 -152050943 + AluSc SINE Alu 63 306 0 23 0 0 0 chr4 32237784 32237807 -152050855 + AT_rich Low_complexity Low_complexity 1 23 0 747 203 40 70 chr4 32237852 32238079 -152050583 - L1MA9 LINE L1 0 6312 6093 423 0 0 0 chr4 32239188 32239235 -152049427 + (TG)n Simple_repeat Simple_repeat 2 48 0 349 316 203 0 chr4 32240115 32240248 -152048414 + MIR3 SINE MIR 38 197 -11 746 197 0 0 chr4 32240317 32240449 -152048213 - FLAM_C SINE Alu 0 133 2 821 208 25 0 chr4 32240928 32241087 -152047575 + FAM SINE Alu 1 163 -12 264 149 0 0 chr4 32242027 32242074 -152046588 + (TG)n Simple_repeat Simple_repeat 2 48 0 231 213 9 37 chr4 32243296 32243404 -152045258 + (TATAA)n Simple_repeat Simple_repeat 3 107 0 328 299 51 0 chr4 32243412 32243529 -152045133 - MIR SINE MIR -32 230 108 441 274 86 46 chr4 32243771 32243968 -152044694 - MIR SINE MIR -14 248 44 * 458 301 152 15 chr4 32243955 32244344 -152044318 + L2 LINE L2 1415 1856 -1458 331 224 20 20 chr4 32244568 32244666 -152043996 + CT-rich Low_complexity Low_complexity 3 100 0 494 333 75 17 chr4 32244905 32245265 -152043397 - L1ME LINE L1 -2984 3096 2716 394 322 70 23 chr4 32246079 32246293 -152042369 + MIR SINE MIR 21 244 -18 1739 128 0 0 chr4 32246587 32246853 -152041809 - L1PB1 LINE L1 -7 6144 5879 248 375 121 12 chr4 32247171 32247419 -152041243 + L2 LINE L2 2804 3078 -194 604 241 64 42 chr4 32247521 32247832 -152040830 - L1ME LINE L1 -5176 894 577 457 241 68 119 chr4 32247942 32248178 -152040484 - L1ME LINE L1 -5513 557 334 237 139 0 0 chr4 32248178 32248221 -152040441 + (T)n Simple_repeat Simple_repeat 1 43 0 4112 39 0 0 chr4 32248224 32248715 -152039947 - L1PA3 LINE L1 -3 6152 5662 839 281 35 26 chr4 32248717 32249058 -152039604 - L1ME LINE L1 -5723 347 4 412 300 108 58 chr4 32249192 32249415 -152039247 - MIR SINE MIR 0 262 29 410 39 0 0 chr4 32249773 32249825 -152038837 + MADE1 DNA Mariner 1 52 -28 902 281 90 59 chr4 32251727 32252475 -152036187 - L1MEc LINE L1 -4309 2087 1317 1272 88 56 70 chr4 32252488 32252703 -152035959 - AluY SINE Alu 0 311 100 359 351 45 0 chr4 32252704 32252838 -152035824 + MIR3 SINE MIR 50 189 -19 257 271 62 70 chr4 32253120 32253249 -152035413 - MIR SINE MIR -12 250 123 949 257 159 34 chr4 32253438 32253909 -152034753 - MLT1H LTR MaLR 0 549 20 653 200 0 0 chr4 32254139 32254254 -152034408 + AluJb SINE Alu 186 300 -12 1202 186 15 47 chr4 32254605 32254879 -152033783 + AluJo SINE Alu 39 303 -9 2310 143 17 23 chr4 32255023 32255466 -152033196 - L1MA5 LINE L1 -27 6273 5831 226 261 0 0 chr4 32255727 32255796 -152032866 - MLT1H-int LTR MaLR -904 467 399 335 253 0 11 chr4 32255916 32256003 -152032659 - MLT1H-int LTR MaLR -1277 94 9 678 182 18 0 chr4 32256011 32256153 -152032509 - MLT1H LTR MaLR 0 549 431 358 280 63 21 chr4 32256263 32256406 -152032256 - MLT1H LTR MaLR -387 162 14 1499 295 47 31 chr4 32257077 32257673 -152030989 - MLT1G LTR MaLR -17 573 1 255 194 194 0 chr4 32259299 32259366 -152029296 + MIR SINE MIR 74 153 -109 369 0 0 0 chr4 32259738 32259779 -152028883 + (CA)n Simple_repeat Simple_repeat 2 42 0 2104 98 0 70 chr4 32260028 32260356 -152028306 + AluSc SINE Alu 1 305 -4 302 295 66 16 chr4 32260405 32260588 -152028074 - L2 LINE L2 -1437 1877 1686 744 350 99 4 chr4 32260606 32261069 -152027593 - L2 LINE L2 -1761 1553 1047 603 281 60 36 chr4 32261087 32261336 -152027326 + L2 LINE L2 2177 2431 -883 203 59 0 29 chr4 32261344 32261378 -152027284 + (TCC)n Simple_repeat Simple_repeat 2 34 0 1537 149 0 109 chr4 32261378 32261700 -152026962 - AluJb SINE Alu -21 291 5 24 32 0 0 chr4 32261816 32261847 -152026815 + AT_rich Low_complexity Low_complexity 1 31 0 424 235 0 0 chr4 32262058 32262139 -152026523 - MER21B LTR ERV1 -498 365 285 258 32 0 0 chr4 32262207 32262238 -152026424 + (TG)n Simple_repeat Simple_repeat 2 32 0 1488 135 0 44 chr4 32262239 32262491 -152026171 + MER21A LTR ERV1 24 264 -667 2921 169 37 46 chr4 32262496 32263057 -152025605 + MER21A LTR ERV1 376 931 0 26 64 0 0 chr4 32263151 32263198 -152025464 + AT_rich Low_complexity Low_complexity 1 47 0 218 85 21 43 chr4 32263404 32263451 -152025211 + (TA)n Simple_repeat Simple_repeat 2 47 0 217 292 35 88 chr4 32263468 32263639 -152025023 + L2 LINE L2 3152 3313 0 580 285 142 11 chr4 32263668 32263928 -152024734 - L2 LINE L2 -2301 1013 720 803 280 111 47 chr4 32264183 32264608 -152024054 - MLT1J LTR MaLR -35 476 25 2260 315 68 62 chr4 32264783 32265486 -152023176 + HERV16 LTR ERVL 1601 2317 -2679 428 0 19 0 chr4 32265486 32265538 -152023124 + (CA)n Simple_repeat Simple_repeat 2 54 0 2260 315 68 62 chr4 32265538 32266177 -152022485 + HERV16 LTR ERVL 2317 2951 -2045 232 296 111 0 chr4 32266180 32266288 -152022374 + L3 LINE CR1 298 417 -1160 326 318 23 16 chr4 32266290 32266419 -152022243 + HERV16 LTR ERVL 3099 3228 -2536 2185 338 82 34 chr4 32266491 32268364 -152020298 + HERV16 LTR ERVL 3382 5344 -420 1357 285 22 53 chr4 32268375 32268637 -152020025 - L1ME3A LINE L1 -77 6093 5825 1263 51 0 0 chr4 32268637 32268795 -152019867 - L1PA4 LINE L1 -3 6152 5995 1357 285 22 53 chr4 32268795 32269154 -152019508 - L1ME3A LINE L1 -345 5825 5491 2273 198 19 0 chr4 32269184 32269599 -152019063 + L1MC4a LINE L1 146 568 -5972 2508 90 0 0 chr4 32269792 32270104 -152018558 - AluSx SINE Alu 0 312 1 23 0 0 0 chr4 32270478 32270501 -152018161 + AT_rich Low_complexity Low_complexity 1 23 0 1594 167 91 23 chr4 32272408 32272750 -152015912 + MLT1A1 LTR MaLR 1 365 0 21 57 0 0 chr4 32273726 32273761 -152014901 + AT_rich Low_complexity Low_complexity 1 35 0 1679 174 0 43 chr4 32274587 32274892 -152013770 + AluJo SINE Alu 3 294 -18 2014 112 0 3 chr4 32275116 32275401 -152013261 - AluSx SINE Alu -2 310 27 1549 196 3 28 chr4 32275401 32275716 -152012946 - AluJo SINE Alu -3 309 1 24 32 0 0 chr4 32275778 32275809 -152012853 + AT_rich Low_complexity Low_complexity 1 31 0 26 30 0 0 chr4 32275882 32275915 -152012747 + AT_rich Low_complexity Low_complexity 1 33 0 2076 270 114 52 chr4 32275997 32277151 -152011511 + L1MC4a LINE L1 1254 2336 -4204 2196 164 68 40 chr4 32277151 32277393 -152011269 + LTR64 LTR ERVK 1 235 -278 2134 123 3 0 chr4 32277393 32277695 -152010967 - AluSx SINE Alu -9 303 1 2196 164 68 40 chr4 32277695 32277951 -152010711 + LTR64 LTR ERVK 235 513 0 2076 270 114 52 chr4 32277951 32279105 -152009557 + L1MC4a LINE L1 2336 3728 -2812 724 238 38 11 chr4 32279108 32279293 -152009369 + L1M2a LINE L1 83 272 -6896 * 2688 288 55 11 chr4 32279290 32280105 -152008557 + L1M2a LINE L1 986 1836 -5332 231 58 19 58 chr4 32280158 32280210 -152008452 + (TTTTTA)n Simple_repeat Simple_repeat 4 53 0 315 315 44 49 chr4 32281053 32281440 -152007222 + L1MC4a LINE L1 5101 5485 -1055 1140 240 100 69 chr4 32281614 32282263 -152006399 + L1MC4a LINE L1 5648 6316 -1886 277 285 90 40 chr4 32283094 32283294 -152005368 + L2 LINE L2 3104 3313 0 304 132 44 0 chr4 32283502 32283570 -152005092 + GA-rich Low_complexity Low_complexity 2 72 0 888 219 0 21 chr4 32283717 32283904 -152004758 - MLT1E3 LTR MaLR -387 237 55 1379 164 15 15 chr4 32285190 32285464 -152003198 - HSMAR2 DNA Mariner 0 1302 1029 22528 153 6 12 chr4 32285495 32289509 -151999153 + L1P3 LINE L1 1094 5090 -1371 4005 75 59 41 chr4 32289496 32289773 -151998889 + L1PA8A LINE L1 5487 5758 -373 * 2164 105 3 16 chr4 32289773 32290079 -151998583 + AluSp SINE Alu 5 306 -7 4005 75 59 41 chr4 32290079 32290415 -151998247 + L1PA8A LINE L1 5758 6111 -20 222 37 0 0 chr4 32290726 32290753 -151997909 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 631 149 11 0 chr4 32290753 32290847 -151997815 - FLAM_A SINE Alu -31 111 17 2742 130 18 7 chr4 32290852 32291297 -151997365 - HSMAR2 DNA Mariner -851 451 2 29 0 0 0 chr4 32292676 32292705 -151995957 + AT_rich Low_complexity Low_complexity 1 29 0 283 211 40 34 chr4 32292758 32292933 -151995729 + (TTATA)n Simple_repeat Simple_repeat 5 180 0 455 217 70 0 chr4 32293275 32293390 -151995272 + MER3 DNA MER1_type 48 123 -86 595 185 80 0 chr4 32293402 32293564 -151995098 + MER3 DNA MER1_type 2410 2584 0 181 341 123 24 chr4 32293902 32294072 -151994590 - MIR SINE MIR -55 207 21 342 105 8 20 chr4 32295229 32295298 -151993364 + AluSp/q SINE Alu 249 303 0 1594 167 91 23 chr4 32295566 32295908 -151992754 + MLT1A1 LTR MaLR 1 365 0 21 57 0 0 chr4 32296884 32296919 -151991743 + AT_rich Low_complexity Low_complexity 1 35 0 1649 177 0 46 chr4 32297744 32298049 -151990613 + AluJo SINE Alu 3 293 -19 1211 128 0 0 chr4 32298277 32298457 -151990205 - AluSg/x SINE Alu -2 308 129 324 0 0 0 chr4 32298457 32298493 -151990169 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 1801 126 0 7 chr4 32298493 32298764 -151989898 - AluY SINE Alu -32 279 11 2388 75 0 0 chr4 32298825 32299120 -151989542 + AluSc SINE Alu 3 297 -12 224 303 92 13 chr4 32299128 32299204 -151989458 + MIR SINE MIR 16 97 -165 4266 172 47 2 chr4 32300184 32300997 -151987665 + L1MB1 LINE L1 5320 6168 0 1939 121 3 34 chr4 32301006 32301328 -151987334 + AluSx SINE Alu 1 312 0 253 253 101 0 chr4 32301334 32301413 -151987249 + L1MC4 LINE L1 6617 6703 -1339 937 270 123 22 chr4 32301531 32302035 -151986627 - L1ME4a LINE L1 -11 6110 5556 329 85 0 0 chr4 32302056 32302103 -151986559 + MADE1 DNA Mariner 34 80 0 248 343 103 23 chr4 32302196 32302496 -151986166 + L1MEc LINE L1 381 704 -6017 1857 127 0 4 chr4 32302768 32303051 -151985611 - AluSq SINE Alu 0 308 27 1549 196 3 28 chr4 32303051 32303366 -151985296 - AluJo SINE Alu -3 309 1 24 32 0 0 chr4 32303428 32303459 -151985203 + AT_rich Low_complexity Low_complexity 1 31 0 26 30 0 0 chr4 32303532 32303565 -151985097 + AT_rich Low_complexity Low_complexity 1 33 0 2076 270 114 52 chr4 32303647 32304801 -151983861 + L1MEc LINE L1 1254 2336 -4204 2196 164 68 40 chr4 32304801 32305043 -151983619 + LTR64 LTR ERVK 1 235 -278 2134 123 3 0 chr4 32305043 32305345 -151983317 - AluSx SINE Alu -9 303 1 2196 164 68 40 chr4 32305345 32305601 -151983061 + LTR64 LTR ERVK 235 513 0 2076 270 114 52 chr4 32305601 32306755 -151981907 + L1MEc LINE L1 2336 3728 -2812 724 238 38 11 chr4 32306758 32306943 -151981719 + L1M4 LINE L1 83 272 -6896 * 2688 288 55 11 chr4 32306940 32307755 -151980907 + L1M4 LINE L1 986 1836 -5332 231 58 19 58 chr4 32307808 32307860 -151980802 + (TTTTTA)n Simple_repeat Simple_repeat 4 53 0 315 315 44 49 chr4 32308703 32309090 -151979572 + L1M4 LINE L1 5728 6112 -1055 1955 161 0 0 chr4 32309527 32309840 -151978822 + AluSc SINE Alu 1 309 0 516 314 76 30 chr4 32310801 32310982 -151977680 - L2 LINE L2 -8 3305 3134 2228 114 0 16 chr4 32310982 32311299 -151977363 + AluSx SINE Alu 1 312 0 516 314 76 30 chr4 32311299 32311313 -151977349 - L2 LINE L2 -179 3134 3122 2005 172 42 51 chr4 32311313 32311784 -151976878 - MLT1C LTR MaLR 0 467 1 516 314 76 30 chr4 32311784 32312175 -151976487 - L2 LINE L2 -191 3122 2683 23 0 0 0 chr4 32313117 32313140 -151975522 + AT_rich Low_complexity Low_complexity 1 23 0 442 271 0 0 chr4 32313568 32313664 -151974998 - MER81 DNA DNA -1 113 18 7245 42 10 0 chr4 32314086 32315692 -151972970 + L1PA4 LINE L1 4537 6153 -2 277 291 97 36 chr4 32315705 32315901 -151972761 + MIR SINE MIR 53 260 -2 410 286 77 6 chr4 32317291 32317459 -151971203 + MIR SINE MIR 21 200 -62 2177 98 14 0 chr4 32318892 32319187 -151969475 + AluSp SINE Alu 1 299 -14 21 36 0 0 chr4 32322342 32322370 -151966292 + AT_rich Low_complexity Low_complexity 1 28 0 2580 45 0 10 chr4 32322981 32323295 -151965367 + AluY SINE Alu 1 311 0 293 201 26 122 chr4 32323717 32323906 -151964756 - MER112 DNA MER1_type -89 171 1 262 274 39 10 chr4 32324390 32324492 -151964170 + MIR3 SINE MIR 99 203 -5 181 422 0 11 chr4 32324839 32324929 -151963733 - MIR SINE MIR -170 92 4 229 65 0 43 chr4 32327137 32327183 -151961479 + (GAAA)n Simple_repeat Simple_repeat 1 44 0 197 222 16 0 chr4 32327644 32327707 -151960955 + GA-rich Low_complexity Low_complexity 2 65 0 2015 70 0 0 chr4 32327998 32328241 -151960421 + AluY SINE Alu 55 297 -14 266 256 99 45 chr4 32328254 32328593 -151960069 + L1MEd LINE L1 993 1387 -4910 363 220 28 28 chr4 32328755 32328864 -151959798 - LTR16A1 LTR ERVL -2 455 347 449 281 107 15 chr4 32328934 32329204 -151959458 + L1M4 LINE L1 5002 5296 -850 1917 134 0 7 chr4 32329447 32329767 -151958895 + AluSx SINE Alu 9 326 0 238 259 44 114 chr4 32329815 32329973 -151958689 - L2 LINE L2 -3 3269 3123 199 327 111 37 chr4 32330134 32330296 -151958366 - L2 LINE L2 -410 2904 2731 530 298 36 40 chr4 32330796 32331044 -151957618 - HERV16 LTR ERVL -1339 3939 3411 808 271 116 19 chr4 32331223 32331585 -151957077 + MLT2C1 LTR ERVL 1 397 0 1722 341 69 19 chr4 32331688 32333302 -151955360 - HERV16 LTR ERVL -2423 3341 1592 504 246 154 11 chr4 32333343 32333518 -151955144 - HERV16 LTR ERVL -4479 517 318 315 294 182 16 chr4 32333760 32333947 -151954715 - LTR16A LTR ERVL 0 450 233 2038 109 36 3 chr4 32334350 32334653 -151954009 + AluSq SINE Alu 1 313 0 536 279 67 31 chr4 32337446 32337889 -151950773 + MER109 Unknown Unknown 40 1450 -982 469 308 10 36 chr4 32337872 32338067 -151950595 + LTR33 LTR ERVL 332 521 0 * 200 394 0 0 chr4 32338125 32338196 -151950466 + L2 LINE L2 3151 3221 -51 1137 122 70 9 chr4 32338217 32338430 -151950232 + L1MA4 LINE L1 6069 6294 -6 2282 154 3 8 chr4 32338463 32338845 -151949817 - L1PB3 LINE L1 -1 6153 5774 1752 204 40 67 chr4 32339019 32339494 -151949168 + MLT1C LTR MaLR 6 467 0 871 342 82 31 chr4 32339498 32340441 -151948221 - L2 LINE L2 -1 3312 2327 2240 142 20 97 chr4 32340441 32340934 -151947728 - LTR32 LTR ERVL 0 471 17 184 292 31 15 chr4 32340935 32341000 -151947662 - L2 LINE L2 -984 2330 2265 1555 329 75 33 chr4 32341004 32341830 -151946832 - L2 LINE L2 -1537 1777 917 1165 234 24 63 chr4 32341918 32342298 -151946364 - MLT1A1 LTR MaLR 0 365 1 2300 282 93 53 chr4 32343298 32346894 -151941768 + L1MCc LINE L1 19 3828 -3113 453 249 94 11 chr4 32346933 32347114 -151941548 + L1MCc LINE L1 4368 4563 -2378 30 45 0 0 chr4 32347124 32347168 -151941494 + AT_rich Low_complexity Low_complexity 1 44 0 308 286 77 39 chr4 32347180 32347362 -151941300 + L1MCc LINE L1 4553 4741 -2200 1079 223 58 42 chr4 32348115 32348474 -151940188 - MLT1A1 LTR MaLR 0 365 1 859 186 126 5 chr4 32348480 32348679 -151939983 - MLT1A1-int LTR MaLR -7 1728 1506 446 32 143 0 chr4 32348686 32348749 -151939913 + MADE1 DNA Mariner 9 80 0 666 206 8 0 chr4 32348907 32349033 -151939629 - FLAM_A SINE Alu -6 127 1 2504 45 0 3 chr4 32349162 32349473 -151939189 + AluY SINE Alu 1 310 -1 646 238 67 0 chr4 32349556 32349720 -151938942 + MER105 DNA DNA 30 204 0 299 309 122 0 chr4 32349887 32350026 -151938636 - MIR SINE MIR 0 262 107 688 272 64 68 chr4 32350338 32350753 -151937909 - LTR35 LTR ERV1 -55 501 86 22 0 0 0 chr4 32350846 32350868 -151937794 + AT_rich Low_complexity Low_complexity 1 22 0 269 237 17 0 chr4 32351257 32351316 -151937346 + LTR40a LTR ERVL 1 60 -459 4316 172 47 2 chr4 32352391 32353204 -151935458 + L1MB1 LINE L1 5320 6168 0 1869 121 3 37 chr4 32353213 32353536 -151935126 + AluSx SINE Alu 1 312 0 262 253 101 0 chr4 32353542 32353621 -151935041 + L1MC4 LINE L1 6617 6703 -1339 1001 286 111 10 chr4 32353739 32354243 -151934419 - L1ME4a LINE L1 -11 6110 5556 330 85 0 0 chr4 32354264 32354311 -151934351 + MADE1 DNA Mariner 34 80 0 2400 87 0 0 chr4 32354975 32355285 -151933377 - AluSx SINE Alu -2 310 1 227 323 20 10 chr4 32356210 32356309 -151932353 - MIR SINE MIR 0 262 163 276 264 128 94 chr4 32356618 32356883 -151931779 - MLT1I LTR MaLR -8 401 128 372 304 174 13 chr4 32356971 32357201 -151931461 - MLT1J1 LTR MaLR -174 272 6 610 318 75 46 chr4 32357322 32357734 -151930928 + L2 LINE L2 2302 2725 -589 264 30 0 0 chr4 32358275 32358308 -151930354 + (CA)n Simple_repeat Simple_repeat 2 34 0 194 314 0 0 chr4 32359354 32359405 -151929257 + L2 LINE L2 3263 3313 0 23 78 0 0 chr4 32359521 32359572 -151929090 + AT_rich Low_complexity Low_complexity 1 51 0 204 135 0 27 chr4 32359622 32359659 -151929003 + (TTTC)n Simple_repeat Simple_repeat 4 39 0 1428 81 38 9 chr4 32360382 32360593 -151928069 - L1PA12 LINE L1 -1 6167 5951 2004 113 7 3 chr4 32360593 32360895 -151927767 - L1PA12 LINE L1 -132 6036 5734 591 158 0 0 chr4 32360898 32360993 -151927669 + L1PA12 LINE L1 2 96 -7485 212 304 54 11 chr4 32361116 32361208 -151927454 + MIR SINE MIR 98 193 -69 22 56 0 0 chr4 32361276 32361312 -151927350 + AT_rich Low_complexity Low_complexity 1 36 0 422 222 229 13 chr4 32361312 32361465 -151927197 + MIR SINE MIR 72 257 -5 180 321 126 44 chr4 32362604 32362763 -151925899 - L2 LINE L2 -229 3043 2872 212 175 0 0 chr4 32362850 32362890 -151925772 + T-rich Low_complexity Low_complexity 1 40 0 2292 87 0 7 chr4 32363329 32363629 -151925033 - AluY SINE Alu -13 298 1 319 356 57 28 chr4 32363662 32363839 -151924823 + MIR3 SINE MIR 16 197 -11 180 0 0 0 chr4 32364447 32364467 -151924195 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 279 319 6 70 chr4 32364702 32364859 -151923803 - MIR3 SINE MIR -3 205 59 207 0 0 0 chr4 32365434 32365457 -151923205 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 264 329 57 19 chr4 32365700 32365858 -151922804 - MIR SINE MIR 0 262 99 347 201 73 104 chr4 32365895 32366059 -151922603 - MIR SINE MIR -55 207 49 22 80 0 0 chr4 32366378 32366428 -151922234 + AT_rich Low_complexity Low_complexity 1 50 0 4179 136 23 1 chr4 32366805 32367488 -151921174 - L1MA1 LINE L1 0 6302 5605 735 68 9 0 chr4 32367488 32367609 -151921053 + L1 LINE L1 5237 5358 -788 182 266 138 32 chr4 32367716 32367810 -151920852 + L3b LINE CR1 1355 1458 -125 6274 53 1 8 chr4 32367838 32368633 -151920029 + L1PA6 LINE L1 5362 6151 -3 3383 196 120 10 chr4 32370029 32370966 -151917696 + L1MA2 LINE L1 3349 4476 -1670 6420 141 40 1 chr4 32372156 32373921 -151914741 + L1MA2 LINE L1 4458 6297 -7 333 224 0 51 chr4 32374448 32374546 -151914116 - L1MA2 LINE L1 -33 6271 6179 184 333 69 20 chr4 32374745 32374847 -151913815 + MIR3 SINE MIR 57 163 -45 273 371 12 60 chr4 32376371 32376502 -151912160 + MER5A DNA MER1_type 4 127 -62 1831 110 30 0 chr4 32376502 32376765 -151911897 - AluSq SINE Alu -11 302 32 273 371 12 60 chr4 32376765 32376800 -151911862 + MER5A DNA MER1_type 127 162 -27 191 193 35 0 chr4 32377495 32377552 -151911110 + GA-rich Low_complexity Low_complexity 2 60 0 2119 108 3 22 chr4 32377937 32378253 -151910409 + AluSg SINE Alu 1 310 0 291 336 25 16 chr4 32378278 32378400 -151910262 + MIR SINE MIR 32 154 -108 29 0 0 0 chr4 32379957 32379986 -151908676 + AT_rich Low_complexity Low_complexity 1 29 0 287 283 299 6 chr4 32380404 32380581 -151908081 + MIR SINE MIR 34 262 0 22 0 0 0 chr4 32380666 32380688 -151907974 + AT_rich Low_complexity Low_complexity 1 22 0 894 120 7 27 chr4 32380722 32380872 -151907790 - L1PA10 LINE L1 0 6168 6022 302 291 109 86 chr4 32381415 32381800 -151906862 + MLT1K LTR MaLR 187 580 -8 219 260 0 0 chr4 32381960 32382010 -151906652 + (TG)n Simple_repeat Simple_repeat 2 51 0 225 270 16 0 chr4 32382016 32382079 -151906583 - MLT1H LTR MaLR -7 542 479 345 323 65 19 chr4 32382431 32382586 -151906076 + MIR SINE MIR 45 206 -56 25 0 0 0 chr4 32382714 32382739 -151905923 + AT_rich Low_complexity Low_complexity 1 25 0 209 269 74 37 chr4 32382986 32383094 -151905568 + MIR SINE MIR 43 154 -108 286 305 19 19 chr4 32383874 32383979 -151904683 - MLT1J2 LTR MaLR -279 171 67 415 359 41 9 chr4 32384023 32384243 -151904419 + MIR SINE MIR 35 261 -1 221 326 11 79 chr4 32384438 32384616 -151904046 - L2 LINE L2 -298 2974 2809 23 33 0 0 chr4 32384759 32384789 -151903873 + AT_rich Low_complexity Low_complexity 1 30 0 261 211 92 13 chr4 32386016 32386092 -151902570 + MIR SINE MIR 86 167 -95 323 401 77 18 chr4 32387416 32387859 -151900803 - L2 LINE L2 -222 3050 2584 200 386 30 0 chr4 32387921 32388022 -151900640 - MIR3 SINE MIR -38 170 67 366 23 0 0 chr4 32388168 32388211 -151900451 + (ATG)n Simple_repeat Simple_repeat 1 43 0 233 291 106 45 chr4 32388215 32388394 -151900268 - MIR SINE MIR -10 252 63 2076 179 87 0 chr4 32389372 32389764 -151898898 - MSTB LTR MaLR 0 426 1 2339 83 3 25 chr4 32390158 32390472 -151898190 + AluY SINE Alu 1 307 -4 229 146 0 42 chr4 32390473 32390521 -151898141 + MLT1E3 LTR MaLR 563 608 -16 463 198 0 12 chr4 32390681 32390767 -151897895 + Tigger1 DNA MER2_type 4 88 -2330 * 4265 149 14 1 chr4 32390759 32391476 -151897186 + Tigger1 DNA MER2_type 416 1141 -1277 1517 181 203 0 chr4 32391476 32391830 -151896832 + MSTA LTR MaLR 1 426 -2 * 7199 133 27 55 chr4 32391830 32393148 -151895514 + Tigger1 DNA MER2_type 1137 2418 0 2218 182 36 25 chr4 32393818 32394264 -151894398 + MER70A LTR ERVL 22 472 0 21 57 0 0 chr4 32394299 32394334 -151894328 + AT_rich Low_complexity Low_complexity 1 35 0 1929 137 27 48 chr4 32394340 32394712 -151893950 + THE1B LTR MaLR 1 364 0 231 61 0 0 chr4 32396551 32396584 -151892078 + (TC)n Simple_repeat Simple_repeat 1 33 0 378 0 0 0 chr4 32396584 32396626 -151892036 + (TG)n Simple_repeat Simple_repeat 1 42 0 383 82 0 0 chr4 32396794 32396843 -151891819 - L1MA4 LINE L1 -76 6224 6176 257 197 15 0 chr4 32397413 32397479 -151891183 + (TAGA)n Simple_repeat Simple_repeat 3 69 0 559 246 6 23 chr4 32399174 32399349 -151889313 - L1MC4a LINE L1 -1191 6617 6446 192 254 9 18 chr4 32399726 32399836 -151888826 + GA-rich Low_complexity Low_complexity 2 110 0 264 252 16 39 chr4 32399838 32399965 -151888697 + A-rich Low_complexity Low_complexity 2 125 0 607 268 57 0 chr4 32400282 32400439 -151888223 + FRAM SINE Alu 1 166 0 329 262 79 37 chr4 32400628 32400792 -151887870 - L1MC/D LINE L1 -881 5478 5308 27 0 0 0 chr4 32400935 32400962 -151887700 + AT_rich Low_complexity Low_complexity 1 27 0 255 316 68 60 chr4 32402346 32402479 -151886183 + MIR SINE MIR 59 192 -70 662 310 10 0 chr4 32403337 32403534 -151885128 - MIR SINE MIR -57 205 7 226 288 62 10 chr4 32404794 32404898 -151883764 + MIR SINE MIR 21 133 -75 2192 260 16 0 chr4 32405585 32406220 -151882442 + L1M4 LINE L1 4272 4916 -1230 992 355 28 39 chr4 32406228 32406867 -151881795 + L1PA13 LINE L1 788 1419 -6155 292 333 0 0 chr4 32406953 32407052 -151881610 + L1PA13 LINE L1 2084 2182 -5399 5329 185 25 4 chr4 32407109 32408831 -151879831 + L1PA16 LINE L1 4408 6157 -9 1322 252 28 17 chr4 32408845 32409314 -151879348 + L1M4 LINE L1 4906 5379 -767 1252 245 32 42 chr4 32409307 32409739 -151878923 + L1MA10 LINE L1 5879 6306 -28 * 1616 223 17 9 chr4 32409763 32410113 -151878549 + MLT1C LTR MaLR 112 464 -3 803 211 31 12 chr4 32410113 32410329 -151878333 + L1MC3 LINE L1 7432 7859 -136 235 226 65 0 chr4 32410304 32410366 -151878296 + L1MC2 LINE L1 6268 6333 -11 * 330 286 130 23 chr4 32410529 32410875 -151877787 + L1M4 LINE L1 2382 2764 -3382 360 59 0 0 chr4 32411402 32411453 -151877209 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 2162 110 3 0 chr4 32411455 32411747 -151876915 - AluSp SINE Alu -20 293 1 579 29 0 0 chr4 32411749 32411818 -151876844 + (TA)n Simple_repeat Simple_repeat 2 70 0 638 217 0 0 chr4 32411818 32411938 -151876724 - FLAM_C SINE Alu -13 120 1 23 0 0 0 chr4 32412178 32412201 -151876461 + AT_rich Low_complexity Low_complexity 1 23 0 279 250 25 0 chr4 32412796 32412876 -151875786 + L1M4 LINE L1 2683 2764 -3382 553 285 111 49 chr4 32413007 32413509 -151875153 + L1M4 LINE L1 4124 4660 -1486 722 208 0 8 chr4 32413509 32413639 -151875023 + FLAM_A SINE Alu 1 129 -4 24 0 0 0 chr4 32413973 32413997 -151874665 + AT_rich Low_complexity Low_complexity 1 24 0 1804 143 93 15 chr4 32414489 32414832 -151873830 + THE1C LTR MaLR 6 375 0 363 44 0 0 chr4 32416442 32416487 -151872175 + (TG)n Simple_repeat Simple_repeat 2 46 0 674 286 48 0 chr4 32416522 32416749 -151871913 + LTR16A1 LTR ERVL 213 450 -7 435 353 12 0 chr4 32416914 32417084 -151871578 - MIR SINE MIR -10 252 81 279 0 0 0 chr4 32417471 32417502 -151871160 + (T)n Simple_repeat Simple_repeat 1 31 0 26 0 0 0 chr4 32418080 32418106 -151870556 + AT_rich Low_complexity Low_complexity 1 26 0 496 273 153 10 chr4 32418138 32418530 -151870132 + L1M4 LINE L1 4115 4562 -1584 574 275 163 0 chr4 32418690 32418930 -151869732 - Charlie2 DNA MER1_type -728 2134 1856 811 316 25 19 chr4 32418932 32419255 -151869407 - Charlie2 DNA MER1_type -2457 325 1 267 303 49 19 chr4 32420434 32420596 -151868066 - L1M4 LINE L1 -2211 3935 3769 399 179 26 0 chr4 32420596 32420674 -151867988 + MADE1 DNA Mariner 1 80 0 783 267 55 71 chr4 32420802 32421057 -151867605 + L1ME1 LINE L1 5907 6157 -27 251 331 105 8 chr4 32421186 32421310 -151867352 + MIR3 SINE MIR 30 165 -43 2138 87 21 3 chr4 32421807 32422096 -151866566 - AluSq SINE Alu -18 295 2 311 308 116 50 chr4 32422460 32422762 -151865900 + L1MEc LINE L1 37 358 -6038 356 192 14 14 chr4 32422762 32422835 -151865827 - MLT1H LTR MaLR -393 156 84 21 0 0 0 chr4 32422908 32422929 -151865733 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr4 32423531 32423569 -151865093 + AT_rich Low_complexity Low_complexity 1 38 0 524 192 156 24 chr4 32424256 32424423 -151864239 - MER53 DNA DNA 0 189 1 247 246 45 55 chr4 32424440 32424550 -151864112 + LTR67 LTR ERVL 415 523 -34 2385 48 6 22 chr4 32425205 32425521 -151863141 - L1PA4 LINE L1 0 6155 5845 256 196 71 0 chr4 32426119 32426175 -151862487 - L2 LINE L2 0 3313 3254 319 273 0 0 chr4 32426181 32426247 -151862415 - MER2 DNA MER2_type -7 338 273 469 354 71 16 chr4 32426441 32426749 -151861913 + HERVL LTR ERVL 2022 2346 -3308 711 253 0 0 chr4 32427396 32427542 -151861120 - MLT1A2 LTR MaLR -228 146 1 22 0 0 0 chr4 32427713 32427735 -151860927 + AT_rich Low_complexity Low_complexity 1 22 0 340 340 87 11 chr4 32428668 32428853 -151859809 + MIR SINE MIR 6 204 -58 1104 233 29 56 chr4 32429741 32429959 -151858703 - MLT1A1 LTR MaLR 0 365 160 1879 124 3 59 chr4 32429959 32430282 -151858380 - AluY SINE Alu -6 305 1 1104 233 29 56 chr4 32430282 32430437 -151858225 - MLT1A1 LTR MaLR -205 160 2 397 323 78 26 chr4 32431806 32432038 -151856624 + L3 LINE CR1 1202 1445 -132 192 77 0 0 chr4 32433282 32433308 -151855354 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 419 318 112 0 chr4 32433368 32433538 -151855124 - MIR SINE MIR -67 195 7 591 214 34 17 chr4 32433827 32433944 -151854718 + FLAM_C SINE Alu 7 125 -18 222 164 0 0 chr4 32433944 32433999 -151854663 + (TA)n Simple_repeat Simple_repeat 2 56 0 1759 191 12 50 chr4 32434716 32435119 -151853543 - MLT1B LTR MaLR -2 388 1 184 355 101 7 chr4 32435377 32435515 -151853147 + L3b LINE CR1 1289 1439 -144 218 370 82 20 chr4 32436227 32436373 -151852289 + MIR SINE MIR 20 174 -88 195 42 0 0 chr4 32436513 32436537 -151852125 + (T)n Simple_repeat Simple_repeat 1 24 0 312 282 0 83 chr4 32436546 32436702 -151851960 - LTR33A LTR ERVL -34 489 347 377 305 70 54 chr4 32436951 32437210 -151851452 - MLT1I LTR MaLR -19 390 128 2087 182 107 8 chr4 32438396 32438864 -151849798 - MER67D LTR ERV1 0 514 1 532 293 52 37 chr4 32439128 32439486 -151849176 - MLT1I LTR MaLR -20 389 57 234 288 0 0 chr4 32441929 32441988 -151846674 + CT-rich Low_complexity Low_complexity 2 60 0 579 320 107 13 chr4 32442269 32442503 -151846159 - MIR SINE MIR -4 258 3 730 196 8 0 chr4 32442625 32442758 -151845904 - FLAM_C SINE Alu -3 140 7 988 101 0 0 chr4 32443033 32443195 -151845467 + AluSc SINE Alu 170 331 0 253 207 52 0 chr4 32443231 32443289 -151845373 + MER58 DNA MER1_type 2359 2419 -1 27 0 0 0 chr4 32444108 32444135 -151844527 + AT_rich Low_complexity Low_complexity 1 27 0 23 33 0 0 chr4 32445398 32445428 -151843234 + AT_rich Low_complexity Low_complexity 1 30 0 207 0 0 0 chr4 32445438 32445461 -151843201 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1800 115 8 0 chr4 32445470 32445731 -151842931 - AluSx SINE Alu -44 268 6 439 243 0 0 chr4 32445734 32445808 -151842854 + MER2 DNA MER2_type 272 345 0 1839 148 7 3 chr4 32445860 32446158 -151842504 - AluJo SINE Alu -2 310 12 264 318 0 12 chr4 32446805 32446890 -151841772 + MIR SINE MIR 174 257 -5 1961 131 0 10 chr4 32447094 32447412 -151841250 - AluSq SINE Alu 0 316 2 412 273 200 0 chr4 32447507 32447657 -151841005 - MER5A DNA MER1_type 0 189 10 517 280 63 35 chr4 32447659 32447802 -151840860 + L2 LINE L2 3126 3272 0 2904 155 8 12 chr4 32447855 32448365 -151840297 - L1PB4 LINE L1 -3 6153 5646 410 109 315 22 chr4 32448472 32448564 -151840098 + LTR14B LTR ERVK 1 119 -489 1813 69 13 98 chr4 32448569 32448887 -151839775 + LTR14A LTR ERVK 54 344 0 28 29 0 0 chr4 32449285 32449320 -151839342 + AT_rich Low_complexity Low_complexity 1 35 0 1656 116 3 104 chr4 32449925 32450253 -151838409 + AluSx SINE Alu 1 295 -17 261 268 12 0 chr4 32450891 32450973 -151837689 + A-rich Low_complexity Low_complexity 1 83 0 1776 149 52 46 chr4 32451434 32451822 -151836840 - MLT1B LTR MaLR 0 390 1 27 29 0 0 chr4 32452488 32452522 -151836140 + AT_rich Low_complexity Low_complexity 1 34 0 350 228 114 72 chr4 32452553 32452790 -151835872 + MER5C DNA MER1_type 1 247 -77 231 167 0 67 chr4 32452800 32452860 -151835802 + A-rich Low_complexity Low_complexity 5 60 0 232 305 25 17 chr4 32452900 32453018 -151835644 + MIR SINE MIR 5 123 -139 605 258 26 70 chr4 32453105 32453334 -151835328 - MER20 DNA MER1_type 0 219 1 228 214 0 0 chr4 32453583 32453639 -151835023 + (TA)n Simple_repeat Simple_repeat 1 56 0 1008 193 100 43 chr4 32453848 32454148 -151834514 + MER33 DNA MER1_type 7 323 -1 33 73 0 0 chr4 32454716 32454784 -151833878 + AT_rich Low_complexity Low_complexity 1 68 0 1063 191 86 65 chr4 32454951 32455287 -151833375 + MER2 DNA MER2_type 2 344 0 23 33 0 0 chr4 32455290 32455320 -151833342 + AT_rich Low_complexity Low_complexity 1 30 0 502 220 23 69 chr4 32455328 32455501 -151833161 + MER105 DNA DNA 22 186 -18 416 322 71 29 chr4 32456316 32456741 -151831921 - L2 LINE L2 -1565 1749 1237 345 276 184 0 chr4 32456895 32457047 -151831615 + MIR SINE MIR 83 262 0 312 48 0 0 chr4 32457419 32457461 -151831201 + (TG)n Simple_repeat Simple_repeat 2 43 0 225 281 125 21 chr4 32457728 32457824 -151830838 - MER102b DNA MER1_type -6 335 230 443 302 117 28 chr4 32458206 32458385 -151830277 - MIR3 SINE MIR -2 206 12 345 265 22 73 chr4 32459572 32459708 -151828954 - L3b LINE CR1 -59 1524 1396 2118 76 0 73 chr4 32461427 32461755 -151826907 - AluY SINE Alu -7 304 1 288 380 25 0 chr4 32462697 32462897 -151825765 + MIR SINE MIR 55 259 -3 3447 199 23 6 chr4 32463280 32464005 -151824657 - L1 LINE L1 -3116 3030 2293 466 326 33 0 chr4 32466996 32467177 -151821485 - MIR SINE MIR -1 261 75 362 273 111 47 chr4 32467615 32467787 -151820875 - MLT1J LTR MaLR 0 511 329 642 271 51 28 chr4 32467860 32468074 -151820588 - MLT1J LTR MaLR -292 219 1 915 332 153 0 chr4 32469826 32470193 -151818469 + L2 LINE L2 2291 2713 -601 715 206 0 8 chr4 32470196 32470362 -151818300 + FLAM_A SINE Alu 1 165 0 611 296 62 11 chr4 32471546 32471722 -151816940 + MIR3 SINE MIR 1 185 -23 203 128 43 0 chr4 32472828 32472875 -151815787 + A-rich Low_complexity Low_complexity 2 50 0 12826 209 23 14 chr4 32473289 32479413 -151809249 - L1PA16 LINE L1 -9 6860 714 180 330 93 10 chr4 32479414 32479511 -151809151 + MIR SINE MIR 45 149 -59 192 125 0 0 chr4 32481739 32481771 -151806891 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 786 93 17 0 chr4 32481866 32481984 -151806678 - L1PA6 LINE L1 -7 6147 6028 192 296 19 0 chr4 32481985 32482039 -151806623 + L2 LINE L2 3172 3226 -87 343 289 0 11 chr4 32482059 32482149 -151806513 + L1MC4 LINE L1 6614 6702 -1340 2206 121 0 9 chr4 32482650 32482965 -151805697 - AluSx SINE Alu 0 312 1 221 299 26 0 chr4 32484437 32484514 -151804148 - L2 LINE L2 -62 3251 3173 3149 42 3 0 chr4 32484631 32485016 -151803646 - L1PA4 LINE L1 -3 6152 5767 604 295 105 0 chr4 32486048 32486238 -151802424 + MIR SINE MIR 31 240 -22 206 371 40 16 chr4 32486363 32486487 -151802175 - MIR3 SINE MIR -76 132 6 304 53 0 0 chr4 32486736 32486774 -151801888 - MLT2B1 LTR ERVL -482 38 1 21 0 0 0 chr4 32487059 32487080 -151801582 + AT_rich Low_complexity Low_complexity 1 21 0 1943 198 97 11 chr4 32487350 32487815 -151800847 + MLT1D LTR MaLR 1 505 0 338 278 47 94 chr4 32487832 32488066 -151800596 - MIR SINE MIR -6 256 34 334 333 42 17 chr4 32488200 32488320 -151800342 - L2 LINE L2 -4 3268 3146 195 364 0 0 chr4 32489195 32489250 -151799412 + MIR SINE MIR 92 146 -62 193 337 152 0 chr4 32490218 32490310 -151798352 + MIR SINE MIR 137 242 -20 1551 231 72 74 chr4 32490395 32490783 -151797879 - MLT2B3 LTR ERVL 0 554 166 2470 70 0 3 chr4 32490783 32491095 -151797567 - AluY SINE Alu 0 311 1 1551 231 72 74 chr4 32491095 32491261 -151797401 - MLT2B3 LTR ERVL -388 166 1 2906 146 10 15 chr4 32491292 32491812 -151796850 - L1MA9 LINE L1 0 6312 5796 384 193 44 53 chr4 32492648 32492682 -151795980 + MER69 DNA AcHobo 2393 2426 -100 1431 223 72 56 chr4 32492682 32493179 -151795483 + MLT1D LTR MaLR 1 505 0 384 193 44 53 chr4 32493179 32493258 -151795404 + MER69 DNA AcHobo 2426 2505 -21 268 253 84 0 chr4 32494569 32494664 -151793998 - MIR SINE MIR -56 206 104 690 241 104 81 chr4 32495108 32495270 -151793392 + L1ME2 LINE L1 5711 5868 -296 1131 228 127 45 chr4 32495270 32495734 -151792928 - MLT1D LTR MaLR -3 502 1 690 241 104 81 chr4 32495734 32496015 -151792647 + L1ME2 LINE L1 5868 6164 0 492 128 0 0 chr4 32497194 32497272 -151791390 + (TCCA)n Simple_repeat Simple_repeat 4 81 0 2171 117 0 0 chr4 32498282 32498580 -151790082 + AluSq SINE Alu 1 298 -15 26 30 0 0 chr4 32498596 32498629 -151790033 + AT_rich Low_complexity Low_complexity 1 33 0 22 80 0 0 chr4 32499146 32499196 -151789466 + AT_rich Low_complexity Low_complexity 1 50 0 253 342 70 77 chr4 32499435 32499748 -151788914 + L2 LINE L2 1725 2035 -1279 901 264 154 48 chr4 32499821 32499857 -151788805 - MLT2B1 LTR ERVL -3 517 486 477 0 0 0 chr4 32499857 32499910 -151788752 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 901 264 154 48 chr4 32499910 32500289 -151788373 - MLT2B1 LTR ERVL -34 486 58 2913 179 11 25 chr4 32500318 32500812 -151787850 + L1MB3 LINE L1 5529 6015 -168 2270 131 46 8 chr4 32500812 32501163 -151787499 + THE1B LTR MaLR 1 364 0 2913 179 11 25 chr4 32501163 32501239 -151787423 + L1MB3 LINE L1 6015 6091 -92 637 183 0 14 chr4 32501262 32501404 -151787258 + L1MB3 LINE L1 6044 6183 0 2327 97 0 0 chr4 32501686 32501984 -151786678 - AluSc SINE Alu -11 298 1 440 319 44 9 chr4 32504415 32504605 -151784057 - MIR SINE MIR -8 254 55 615 251 119 37 chr4 32505092 32505335 -151783327 + MLT1H LTR MaLR 43 305 -244 4671 105 3 0 chr4 32505499 32506154 -151782508 - L1PA11 LINE L1 0 6174 5518 1246 136 30 0 chr4 32506154 32506398 -151782264 + L1P4 LINE L1 5210 5459 -709 328 224 24 0 chr4 32506398 32506483 -151782179 + MLT1H LTR MaLR 463 549 0 1262 39 13 0 chr4 32507061 32507215 -151781447 - L1PA3 LINE L1 -2 6153 5998 3685 82 224 2 chr4 32507555 32508118 -151780544 - LTR12 LTR ERV1 0 688 1 2015 112 20 0 chr4 32508206 32508501 -151780161 - AluSq SINE Alu -12 301 1 219 288 198 0 chr4 32508690 32508801 -151779861 - L2 LINE L2 -1 3312 3180 222 105 0 0 chr4 32508883 32508921 -151779741 + (A)n Simple_repeat Simple_repeat 1 38 0 306 345 55 19 chr4 32509056 32509396 -151779266 + MLT1I LTR MaLR 31 409 0 229 306 271 7 chr4 32511880 32512024 -151776638 + MER5A DNA MER1_type 2 183 -6 2047 103 27 10 chr4 32512334 32512626 -151776036 + AluSx SINE Alu 5 301 -11 331 247 78 32 chr4 32513099 32513253 -151775409 - MER103 DNA DNA 0 166 6 192 77 0 0 chr4 32515684 32515710 -151772952 + (TA)n Simple_repeat Simple_repeat 1 26 0 315 330 0 0 chr4 32515873 32515961 -151772701 - L1MC4 LINE L1 -1341 6701 6614 308 250 36 0 chr4 32515889 32515973 -151772689 + L1MC4 LINE L1 6614 6700 -1342 * 334 276 23 0 chr4 32515973 32516060 -151772602 + L1MC4 LINE L1 6612 6700 -1342 207 204 0 0 chr4 32516062 32516111 -151772551 + (TA)n Simple_repeat Simple_repeat 2 50 0 2268 115 12 9 chr4 32516390 32516720 -151771942 - THE1B LTR MaLR 0 364 34 360 0 0 0 chr4 32517586 32517626 -151771036 + (TA)n Simple_repeat Simple_repeat 1 40 0 240 35 0 0 chr4 32517625 32517654 -151771008 + (CA)n Simple_repeat Simple_repeat 2 30 0 * 29 70 0 0 chr4 32517944 32518001 -151770661 + AT_rich Low_complexity Low_complexity 1 57 0 311 330 18 18 chr4 32518526 32518638 -151770024 + L1ME3A LINE L1 5808 5919 -251 515 264 108 67 chr4 32518965 32519442 -151769220 + HAL1 LINE L1 764 1289 -1218 198 0 0 0 chr4 32519442 32519464 -151769198 + (GA)n Simple_repeat Simple_repeat 2 23 0 515 264 108 67 chr4 32519464 32519792 -151768870 + HAL1 LINE L1 1289 1602 -905 423 308 96 25 chr4 32520154 32520352 -151768310 + LTR16A LTR ERVL 234 445 -5 704 278 172 40 chr4 32520360 32520756 -151767906 + HERV16 LTR ERVL 4 451 -4545 436 253 110 28 chr4 32520837 32521019 -151767643 + HERV16 LTR ERVL 560 756 -4240 252 0 0 0 chr4 32521211 32521239 -151767423 + (T)n Simple_repeat Simple_repeat 1 28 0 252 227 0 148 chr4 32521611 32521699 -151766963 + HERV16 LTR ERVL 1310 1384 -3612 21 57 0 0 chr4 32521720 32521755 -151766907 + AT_rich Low_complexity Low_complexity 1 35 0 407 331 15 0 chr4 32521944 32522077 -151766585 + HERV16 LTR ERVL 1741 1875 -3121 711 319 45 59 chr4 32522081 32522369 -151766293 + MER45C DNA AcHobo 1 284 -669 552 188 140 25 chr4 32522420 32522610 -151766052 + MER45C DNA AcHobo 735 946 -7 1192 312 22 20 chr4 32522621 32523079 -151765583 + HERV16 LTR ERVL 1880 2338 -2658 535 228 16 8 chr4 32523168 32523295 -151765367 - MER65B LTR ERV1 -403 128 1 1702 177 0 14 chr4 32523803 32524097 -151764565 - AluJo SINE Alu -20 292 3 344 293 94 38 chr4 32524102 32524314 -151764348 + HAL1 LINE L1 2169 2392 -115 1296 188 102 64 chr4 32524513 32524660 -151764002 - THE1C LTR MaLR 0 375 235 2239 121 22 25 chr4 32524660 32525025 -151763637 - THE1B LTR MaLR 0 364 1 1296 188 102 64 chr4 32525025 32525238 -151763424 - THE1C LTR MaLR -140 235 1 192 380 98 16 chr4 32525458 32525713 -151762949 + L2 LINE L2 2804 3079 -193 235 279 25 0 chr4 32525849 32525928 -151762734 + (TA)n Simple_repeat Simple_repeat 2 82 0 3371 164 75 5 chr4 32526277 32527261 -151761401 - L1MA9 LINE L1 -182 6130 5039 25 0 0 0 chr4 32527970 32527995 -151760667 + AT_rich Low_complexity Low_complexity 1 25 0 211 179 0 0 chr4 32528231 32528270 -151760392 - MIR SINE MIR -13 249 211 189 340 65 45 chr4 32528684 32528884 -151759778 + MIR SINE MIR 53 256 -6 23 33 0 0 chr4 32529516 32529546 -151759116 + AT_rich Low_complexity Low_complexity 1 30 0 225 284 0 0 chr4 32529763 32529837 -151758825 + (TA)n Simple_repeat Simple_repeat 1 74 0 255 157 0 0 chr4 32530002 32530053 -151758609 + (TATG)n Simple_repeat Simple_repeat 2 52 0 1396 254 85 31 chr4 32530062 32530931 -151757731 - L1ME1 LINE L1 -287 6674 5758 545 253 68 0 chr4 32530934 32531155 -151757507 - L1ME1 LINE L1 -1754 5187 4952 2825 283 47 32 chr4 32531163 32531678 -151756984 - L1ME1 LINE L1 -2154 4787 4281 214 162 0 0 chr4 32531678 32531715 -151756947 + (TATATG)n Simple_repeat Simple_repeat 5 41 0 2825 283 47 32 chr4 32531715 32532807 -151755855 - L1ME1 LINE L1 -2660 4281 3120 521 258 76 46 chr4 32532809 32533223 -151755439 + L1MEc LINE L1 2030 2405 -3810 864 264 84 12 chr4 32533240 32533574 -151755088 - L1ME1 LINE L1 -4889 1534 1177 286 351 22 44 chr4 32533652 32533880 -151754782 - L1ME1 LINE L1 -5394 1029 807 957 275 46 17 chr4 32534092 32534441 -151754221 - L1ME1 LINE L1 -5955 468 110 836 341 93 12 chr4 32536433 32537054 -151751608 - L2 LINE L2 0 3313 2548 226 267 41 14 chr4 32537109 32537255 -151751407 + (TTATA)n Simple_repeat Simple_repeat 5 154 0 199 309 170 0 chr4 32537255 32537349 -151751313 + L2 LINE L2 2544 2653 -661 1578 124 57 25 chr4 32537349 32537631 -151751031 + THE1C LTR MaLR 85 375 0 186 364 58 13 chr4 32537788 32537942 -151750720 - MIR SINE MIR -48 214 54 1321 215 48 16 chr4 32538204 32538541 -151750121 + L1MA10 LINE L1 5996 6331 -3 412 259 37 0 chr4 32538541 32538649 -151750013 + L1MB5 LINE L1 6040 6151 -23 2004 194 39 15 chr4 32538652 32539064 -151749598 + MSTB LTR MaLR 1 422 -4 2754 10 0 10 chr4 32539907 32540219 -151748443 - AluYa5 SINE Alu -2 309 1 652 233 12 64 chr4 32540751 32540923 -151747739 + Charlie1a DNA MER1_type 1 163 -1292 412 265 117 25 chr4 32540933 32541129 -151747533 + Charlie1a DNA MER1_type 484 697 -758 1723 250 79 23 chr4 32541130 32541687 -151746975 - MLT1E3 LTR MaLR 0 624 50 462 307 20 13 chr4 32542381 32542531 -151746131 - MIR SINE MIR -103 159 9 213 65 0 0 chr4 32543029 32543060 -151745602 + (TC)n Simple_repeat Simple_repeat 2 32 0 465 319 28 7 chr4 32543103 32543244 -151745418 - MIR3 SINE MIR -42 166 23 476 282 121 36 chr4 32545052 32545300 -151743362 - L3 LINE CR1 -4 1573 1305 23 0 0 0 chr4 32545436 32545459 -151743203 + AT_rich Low_complexity Low_complexity 1 23 0 218 341 68 0 chr4 32546132 32546220 -151742442 - L3 LINE CR1 -439 1138 1045 203 381 65 7 chr4 32546447 32546586 -151742076 - L2 LINE L2 0 3313 3167 2105 172 34 49 chr4 32546762 32547234 -151741428 - L1MC3 LINE L1 -184 7601 7137 581 278 42 69 chr4 32547244 32547550 -151741112 - L1MCb LINE L1 -5710 335 38 1917 193 21 23 chr4 32547564 32547948 -151740714 - MLT1B LTR MaLR -7 383 1 1606 224 37 3 chr4 32548248 32548601 -151740061 - MLT1A1 LTR MaLR 0 365 1 456 234 48 8 chr4 32548651 32548775 -151739887 - MER76 LTR ERV -9 679 551 246 331 92 71 chr4 32548825 32549009 -151739653 - MER5A DNA MER1_type 0 189 2 265 284 128 28 chr4 32549100 32549241 -151739421 + MIR3 SINE MIR 50 204 -4 247 337 22 22 chr4 32549802 32549891 -151738771 + MIR SINE MIR 68 156 -106 1533 266 47 32 chr4 32550568 32551097 -151737565 + MLT1E2 LTR MaLR 115 626 0 370 293 78 12 chr4 32551377 32551544 -151737118 + MIR SINE MIR 70 247 -15 212 332 49 86 chr4 32551732 32551976 -151736686 - L2 LINE L2 -167 3105 2871 2217 120 3 6 chr4 32553182 32553516 -151735146 + L1PB3 LINE L1 5660 5992 -162 2252 90 0 0 chr4 32553601 32553901 -151734761 - AluSc SINE Alu -9 300 1 230 244 82 91 chr4 32554425 32554765 -151733897 - L1ME LINE L1 -3996 2829 2493 401 257 174 61 chr4 32554955 32555266 -151733396 - L1ME LINE L1 -4576 2249 1904 25 51 0 0 chr4 32555266 32555305 -151733357 + AT_rich Low_complexity Low_complexity 1 39 0 2295 180 13 16 chr4 32555331 32555781 -151732881 - L1MC1 LINE L1 -256 6077 5629 303 321 24 13 chr4 32556027 32556260 -151732402 - L1ME LINE L1 -5051 1565 1296 360 330 38 27 chr4 32556606 32556791 -151731871 - MIR3 SINE MIR 0 208 22 306 242 30 30 chr4 32556856 32556955 -151731707 - LTR67 LTR ERVL -31 526 428 2479 56 0 0 chr4 32557355 32557660 -151731002 + AluY SINE Alu 1 305 -6 191 252 68 87 chr4 32557676 32557779 -151730883 + MIR SINE MIR 107 207 -55 212 179 0 0 chr4 32558480 32558519 -151730143 + T-rich Low_complexity Low_complexity 1 39 0 1922 41 0 8 chr4 32558523 32558767 -151729895 + L1PA4 LINE L1 5911 6152 -3 2188 104 3 0 chr4 32558940 32559229 -151729433 + AluSx SINE Alu 1 290 -22 213 65 0 0 chr4 32559232 32559263 -151729399 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 2291 117 0 0 chr4 32559991 32560300 -151728362 + AluSg SINE Alu 1 309 -1 392 82 16 0 chr4 32561008 32561069 -151727593 + (TA)n Simple_repeat Simple_repeat 2 63 0 24 0 0 0 chr4 32561888 32561912 -151726750 + AT_rich Low_complexity Low_complexity 1 24 0 264 309 81 37 chr4 32562085 32562221 -151726441 + MIR SINE MIR 60 201 -61 183 42 0 0 chr4 32562494 32562518 -151726144 + (GA)n Simple_repeat Simple_repeat 2 25 0 13548 154 16 37 chr4 32562739 32564172 -151724490 + Tigger1 DNA MER2_type 11 1370 -1048 690 146 0 0 chr4 32564172 32564282 -151724380 + L1MB8 LINE L1 6061 6170 -8 13548 154 16 37 chr4 32564282 32565309 -151723353 + Tigger1 DNA MER2_type 1370 2418 0 232 318 0 0 chr4 32565386 32565452 -151723210 - MIR SINE MIR -153 109 44 23 0 0 0 chr4 32565700 32565723 -151722939 + AT_rich Low_complexity Low_complexity 1 23 0 217 371 8 24 chr4 32566181 32566305 -151722357 - L2 LINE L2 -1007 2307 2186 2339 113 11 11 chr4 32566383 32566746 -151721916 + THE1B LTR MaLR 2 364 0 247 351 26 33 chr4 32566826 32566977 -151721685 + MER5A DNA MER1_type 10 159 -30 23 0 0 0 chr4 32567414 32567437 -151721225 + AT_rich Low_complexity Low_complexity 1 23 0 227 268 28 0 chr4 32567452 32567523 -151721139 + MER103 DNA DNA 94 166 0 333 325 51 6 chr4 32567686 32567843 -151720819 + MIR SINE MIR 97 260 -2 722 221 0 0 chr4 32567945 32568076 -151720586 - FLAM_A SINE Alu -2 131 1 1036 173 66 29 chr4 32568091 32568363 -151720299 - L1MA8 LINE L1 0 6291 6010 1005 338 79 41 chr4 32568893 32569745 -151718917 - L2 LINE L2 -673 2641 1758 347 160 0 85 chr4 32569752 32569846 -151718816 - MER53 DNA DNA -1 188 103 386 324 66 39 chr4 32569894 32570019 -151718643 - L2 LINE L2 -1593 1721 1601 2474 67 0 3 chr4 32570019 32570331 -151718331 - AluY SINE Alu 0 311 1 386 324 66 39 chr4 32570331 32570538 -151718124 - L2 LINE L2 -1713 1601 1380 1842 170 0 0 chr4 32570841 32571135 -151717527 + AluJb SINE Alu 3 296 -16 182 174 22 0 chr4 32571313 32571359 -151717303 + (TA)n Simple_repeat Simple_repeat 1 47 0 312 27 0 0 chr4 32571415 32571452 -151717210 + (TG)n Simple_repeat Simple_repeat 1 37 0 293 339 115 10 chr4 32571649 32571841 -151716821 + MIR SINE MIR 34 245 -17 180 310 69 0 chr4 32571868 32571926 -151716736 - MIR SINE MIR -21 241 180 250 316 110 13 chr4 32572038 32572193 -151716469 - MIR SINE MIR -86 176 7 1978 141 7 0 chr4 32572366 32572671 -151715991 - AluSx SINE Alu -5 307 1 22 0 0 0 chr4 32575551 32575573 -151713089 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr4 32576487 32576507 -151712155 + (TC)n Simple_repeat Simple_repeat 1 20 0 242 390 8 8 chr4 32576713 32576831 -151711831 - L2 LINE L2 0 3272 3155 606 282 62 37 chr4 32577049 32577524 -151711138 - MLT1G LTR MaLR -2 588 34 323 291 162 12 chr4 32577784 32578025 -151710637 - MLT1J2 LTR MaLR -105 345 69 2294 90 3 0 chr4 32578223 32578523 -151710139 + AluY SINE Alu 1 301 -10 376 152 91 0 chr4 32578823 32578889 -151709773 - L1PB4 LINE L1 -281 5875 5804 189 0 0 0 chr4 32578894 32578915 -151709747 + (TG)n Simple_repeat Simple_repeat 2 22 0 203 294 15 0 chr4 32578944 32579012 -151709650 + (TA)n Simple_repeat Simple_repeat 2 70 0 365 57 0 19 chr4 32579018 32579071 -151709591 + (TG)n Simple_repeat Simple_repeat 2 53 0 335 23 23 0 chr4 32579070 32579114 -151709548 + (TA)n Simple_repeat Simple_repeat 1 45 0 * 2655 134 4 20 chr4 32579133 32579588 -151709074 - L1PB4 LINE L1 -384 5772 5325 543 317 86 52 chr4 32580034 32580419 -151708243 + L3 LINE CR1 1158 1555 -22 289 282 57 32 chr4 32580421 32580545 -151708117 - MIR3 SINE MIR -1 207 81 285 143 0 0 chr4 32581002 32581051 -151707611 - L2 LINE L2 0 3313 3265 291 300 22 94 chr4 32581367 32581437 -151707225 - MIR SINE MIR -1 261 188 2203 102 3 10 chr4 32581437 32581740 -151706922 - AluSx SINE Alu -11 301 1 291 300 22 94 chr4 32581740 32581849 -151706813 - MIR SINE MIR -74 188 95 625 292 91 62 chr4 32582227 32582710 -151705952 + MLT1J LTR MaLR 3 499 -12 21 0 0 0 chr4 32583440 32583461 -151705201 + AT_rich Low_complexity Low_complexity 1 21 0 2294 132 43 3 chr4 32583957 32584329 -151704333 + L1PA15 LINE L1 5779 6165 0 1171 260 56 6 chr4 32584663 32585021 -151703641 + L1ME3A LINE L1 5523 5898 -272 24 0 0 0 chr4 32588403 32588427 -151700235 + AT_rich Low_complexity Low_complexity 1 24 0 2009 105 4 4 chr4 32588615 32588918 -151699744 + AluSc SINE Alu 3 305 0 3986 216 79 22 chr4 32588948 32589802 -151698860 - L1MC3 LINE L1 -8 7777 6814 432 0 0 0 chr4 32589802 32589850 -151698812 + (TG)n Simple_repeat Simple_repeat 2 49 0 3986 216 79 22 chr4 32589850 32590530 -151698132 - L1MC3 LINE L1 -971 6814 6174 1701 135 7 66 chr4 32590618 32590947 -151697715 - AluSq SINE Alu 0 311 1 21 36 0 0 chr4 32591523 32591551 -151697111 + AT_rich Low_complexity Low_complexity 1 28 0 465 336 48 22 chr4 32592704 32592933 -151695729 - MIR SINE MIR 0 262 28 475 273 68 19 chr4 32592981 32593186 -151695476 - LTR67 LTR ERVL -17 540 326 2274 106 0 0 chr4 32594208 32594509 -151694153 - AluSg SINE Alu -9 301 1 3071 319 99 24 chr4 32594664 32596215 -151692447 - L2 LINE L2 -661 2653 986 285 323 37 19 chr4 32597315 32597367 -151691295 + L1MCc LINE L1 39 89 -6334 2256 93 0 7 chr4 32597367 32597667 -151690995 + AluSc SINE Alu 1 298 -11 285 323 37 19 chr4 32597667 32597775 -151690887 + L1MCc LINE L1 89 202 -6221 30 0 0 0 chr4 32598372 32598402 -151690260 + AT_rich Low_complexity Low_complexity 1 30 0 253 196 62 82 chr4 32598421 32598518 -151690144 + L1MCc LINE L1 2429 2523 -4599 558 273 129 43 chr4 32598554 32598810 -151689852 - MLT1E3 LTR MaLR 0 624 347 976 155 0 12 chr4 32598813 32598981 -151689681 + MER61-int LTR ERV1 2615 2780 -2437 192 40 0 0 chr4 32598982 32599007 -151689655 + (CAA)n Simple_repeat Simple_repeat 3 27 0 2062 188 18 5 chr4 32599007 32599391 -151689271 + MER61-int LTR ERV1 2817 3205 -2012 3627 101 38 30 chr4 32599417 32599858 -151688804 + LTR19B LTR ERV1 1 451 -129 2134 65 0 7 chr4 32599858 32600171 -151688491 + AluY SINE Alu 7 317 0 3627 101 38 30 chr4 32600171 32600303 -151688359 + LTR19B LTR ERV1 451 580 0 1114 263 141 30 chr4 32600308 32600677 -151687985 - MLT1E1 LTR MaLR -244 410 1 2872 293 62 22 chr4 32600678 32600968 -151687694 + L1MCc LINE L1 2553 2830 -4111 2385 90 0 6 chr4 32600968 32601280 -151687382 + AluSg SINE Alu 1 310 0 2872 293 62 22 chr4 32601280 32603164 -151685498 + L1MCc LINE L1 2830 4930 -2011 1070 282 113 3 chr4 32603164 32603519 -151685143 - LTR53 LTR ERVL 0 519 126 2523 163 14 0 chr4 32603519 32603987 -151684675 + MER1A DNA MER1_type 1 524 -5 369 163 138 12 chr4 32603989 32604064 -151684598 - LTR53 LTR ERVL -384 135 51 1504 245 28 20 chr4 32604064 32604456 -151684206 + MLT1C LTR MaLR 1 395 -72 1348 278 11 8 chr4 32604456 32604827 -151683835 + L1MD3 LINE L1 7452 7823 -172 24 0 0 0 chr4 32605049 32605073 -151683589 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr4 32605184 32605205 -151683457 + AT_rich Low_complexity Low_complexity 1 21 0 1245 215 64 13 chr4 32605906 32606218 -151682444 - MER2 DNA MER2_type -9 336 9 1120 254 111 19 chr4 32606585 32606944 -151681718 + MLT1H LTR MaLR 14 405 -144 258 32 0 0 chr4 32606945 32606976 -151681686 + (CAGCC)n Simple_repeat Simple_repeat 3 33 0 186 313 179 0 chr4 32608381 32608493 -151680169 - MIR SINE MIR -14 248 117 310 307 129 7 chr4 32609343 32609483 -151679179 - MIR SINE MIR -27 235 79 28 29 0 0 chr4 32609953 32609988 -151678674 + AT_rich Low_complexity Low_complexity 1 35 0 506 275 128 22 chr4 32610291 32610551 -151678111 + MLT1J2 LTR MaLR 42 331 -119 322 134 63 0 chr4 32610760 32610887 -151677775 + (TA)n Simple_repeat Simple_repeat 1 135 0 33 66 0 0 chr4 32611081 32611142 -151677520 + AT_rich Low_complexity Low_complexity 1 61 0 231 270 138 13 chr4 32611158 32611310 -151677352 + L1ME4a LINE L1 5947 6117 -4 22 56 0 0 chr4 32612331 32612367 -151676295 + AT_rich Low_complexity Low_complexity 1 36 0 180 0 0 0 chr4 32612369 32612389 -151676273 + (TA)n Simple_repeat Simple_repeat 2 21 0 2174 109 0 16 chr4 32612729 32613041 -151675621 - AluSx SINE Alu -5 307 1 260 368 69 45 chr4 32613719 32614094 -151674568 - L2 LINE L2 0 3313 2930 664 176 7 0 chr4 32614539 32614675 -151673987 + L1MA4A LINE L1 5937 6073 -230 22 80 0 0 chr4 32614684 32614734 -151673928 + AT_rich Low_complexity Low_complexity 1 50 0 21 36 0 0 chr4 32615483 32615511 -151673151 + AT_rich Low_complexity Low_complexity 1 28 0 294 328 90 0 chr4 32616268 32616402 -151672260 - MIR SINE MIR 0 262 117 480 77 0 0 chr4 32617051 32617116 -151671546 - L1PA6 LINE L1 0 6154 6090 761 255 46 0 chr4 32618441 32618698 -151669964 + L1MC3 LINE L1 6636 6862 -923 340 190 63 0 chr4 32618728 32618807 -151669855 + L1MC3 LINE L1 7176 7259 -526 2380 65 3 7 chr4 32618836 32619146 -151669516 + AluY SINE Alu 1 309 -2 396 307 88 45 chr4 32619310 32619443 -151669219 - L1MEc LINE L1 -3751 2464 2338 538 51 26 0 chr4 32619443 32619521 -151669141 + (TCTA)n Simple_repeat Simple_repeat 1 80 0 396 307 88 45 chr4 32619521 32619721 -151668941 - L1MEc LINE L1 -3877 2338 2152 1960 147 10 0 chr4 32619799 32620099 -151668563 + AluSx SINE Alu 1 303 -9 390 264 151 0 chr4 32620145 32620304 -151668358 - MER3 DNA MER1_type -4 205 23 1498 247 53 3 chr4 32620312 32620688 -151667974 - MSTD LTR MaLR 0 396 2 14795 149 31 36 chr4 32620697 32623441 -151665221 - Tigger4(Zombi) DNA MER2_type 0 2731 1 241 245 38 19 chr4 32623977 32624083 -151664579 + L1ME LINE L1 5710 5817 -347 22 0 0 0 chr4 32624205 32624227 -151664435 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr4 32624370 32624415 -151664247 + AT_rich Low_complexity Low_complexity 1 45 0 25 65 0 0 chr4 32624726 32624772 -151663890 + AT_rich Low_complexity Low_complexity 1 46 0 676 285 60 74 chr4 32625031 32625600 -151663062 - L1MC4a LINE L1 -1910 5898 5338 24 32 0 0 chr4 32625652 32625683 -151662979 + AT_rich Low_complexity Low_complexity 1 31 0 6003 105 24 0 chr4 32626299 32627186 -151661476 - L1PA14 LINE L1 0 6161 5254 465 304 60 36 chr4 32627609 32627944 -151660718 + MLT1J1 LTR MaLR 102 444 -2 2220 95 0 3 chr4 32628795 32629110 -151659552 - L1PA7 LINE L1 -1 6153 5840 2692 188 90 15 chr4 32629494 32630107 -151658555 - L1MB8 LINE L1 -16 6162 5504 293 254 32 0 chr4 32630112 32630175 -151658487 - L2 LINE L2 -22 3291 3227 735 179 15 0 chr4 32630427 32630561 -151658101 - AluJo SINE Alu -175 137 2 413 230 11 118 chr4 32631191 32631369 -151657293 - MER5B DNA MER1_type -19 159 1 23 0 0 0 chr4 32631456 32631479 -151657183 + AT_rich Low_complexity Low_complexity 1 23 0 21 71 0 0 chr4 32631852 32631894 -151656768 + AT_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chr4 32632694 32632719 -151655943 + AT_rich Low_complexity Low_complexity 1 25 0 25 75 0 0 chr4 32632908 32632961 -151655701 + AT_rich Low_complexity Low_complexity 1 53 0 983 129 0 0 chr4 32633782 32633922 -151654740 + AluSg/x SINE Alu 158 297 -15 638 307 47 30 chr4 32634990 32635290 -151653372 + MER102a DNA MER1_type 26 330 0 565 271 64 44 chr4 32636801 32637004 -151651658 - MER63A DNA MER1_type -3 207 1 656 349 120 8 chr4 32637280 32637673 -151650989 + L2 LINE L2 817 1253 -2061 2478 253 66 38 chr4 32637673 32639345 -151649317 + L1MB5 LINE L1 929 2747 -3635 1664 167 13 35 chr4 32639785 32640103 -151648559 + AluSx SINE Alu 1 311 -1 690 296 54 0 chr4 32640242 32640502 -151648160 + L1MB5 LINE L1 3904 4177 -2205 * 9822 197 24 6 chr4 32640500 32642060 -151646602 - L1 LINE L1 -1291 6274 4664 1940 162 0 22 chr4 32642060 32642375 -151646287 - AluSx SINE Alu -2 310 3 9822 197 24 6 chr4 32642375 32642994 -151645668 - L1 LINE L1 -2901 4664 4057 928 142 7 0 chr4 32642994 32643135 -151645527 + FRAM SINE Alu 20 161 -15 3677 224 41 77 chr4 32643145 32644998 -151643664 - L1 LINE L1 -3501 4064 2265 3485 226 47 18 chr4 32645131 32646579 -151642083 + L1MB5 LINE L1 4912 6403 -7 343 282 17 35 chr4 32647009 32647183 -151641479 + MER31-int LTR ERV1 1117 1287 -3649 297 232 71 52 chr4 32647223 32647378 -151641284 + MER31-int LTR ERV1 1289 1446 -3490 435 231 35 46 chr4 32647532 32647705 -151640957 + MER31-int LTR ERV1 1698 1868 -3068 238 276 0 0 chr4 32647713 32647789 -151640873 - L1MC4 LINE L1 -1326 6716 6641 921 253 147 60 chr4 32647822 32648828 -151639834 + MER31-int LTR ERV1 1921 3059 -1877 185 301 14 82 chr4 32649002 32649075 -151639587 + MER5A DNA MER1_type 34 101 -88 2353 100 0 0 chr4 32650425 32650726 -151637936 + AluSg SINE Alu 1 301 -9 1227 163 94 75 chr4 32650726 32651100 -151637562 + LTR23 LTR ERV1 55 435 -2 25 95 0 0 chr4 32651493 32651567 -151637095 + AT_rich Low_complexity Low_complexity 1 74 0 2045 113 0 7 chr4 32652279 32652561 -151636101 - AluSg SINE Alu -30 280 1 3860 167 18 20 chr4 32652750 32653462 -151635200 - MER50 LTR ERV1 -23 711 1 4969 172 24 8 chr4 32653891 32654840 -151633822 + L1MA8 LINE L1 5325 6288 -3 273 57 0 0 chr4 32655049 32655084 -151633578 + (CA)n Simple_repeat Simple_repeat 1 35 0 1024 398 23 42 chr4 32655525 32656391 -151632271 - MERVL LTR ERVL -155 5330 4470 864 357 76 17 chr4 32656397 32656974 -151631688 - MERVL LTR ERVL -1465 4189 3579 399 320 80 4 chr4 32657138 32657363 -151631299 - L1ME3A LINE L1 -255 6710 6469 316 337 0 0 chr4 32657755 32657888 -151630774 + L1ME LINE L1 5483 5615 -549 28 71 0 0 chr4 32658113 32658169 -151630493 + AT_rich Low_complexity Low_complexity 1 56 0 2204 101 7 3 chr4 32658502 32658810 -151629852 + AluSc SINE Alu 1 309 0 2029 113 3 7 chr4 32659072 32659373 -151629289 - AluSg SINE Alu -5 305 6 380 292 104 77 chr4 32659531 32659973 -151628689 - L1M4 LINE L1 -3123 3023 2570 487 327 67 0 chr4 32660412 32660620 -151628042 + MLT1H LTR MaLR 62 283 -266 298 299 41 14 chr4 32660686 32660833 -151627829 + MLT1H LTR MaLR 386 536 -13 372 307 119 34 chr4 32660855 32661233 -151627429 - L1ME3A LINE L1 -990 5951 5542 257 209 38 48 chr4 32661260 32661365 -151627297 - L1ME3A LINE L1 -1469 5472 5369 2059 164 72 8 chr4 32661918 32662320 -151626342 - MSTA LTR MaLR 0 428 1 8697 184 21 11 chr4 32662320 32663852 -151624810 - MSTA-int LTR MaLR 0 1651 99 2116 136 0 7 chr4 32663852 32664160 -151624502 - AluSg SINE Alu -4 306 1 8697 184 21 11 chr4 32664160 32664261 -151624401 - MSTA-int LTR MaLR -1552 99 1 247 65 0 0 chr4 32664270 32664301 -151624361 - MSTA LTR MaLR -15 413 383 1623 172 156 5 chr4 32664313 32664685 -151623977 - MSTA LTR MaLR 0 428 1 328 307 48 41 chr4 32665278 32665571 -151623091 - L1M4 LINE L1 -3714 2432 2138 22 0 0 0 chr4 32665674 32665696 -151622966 + AT_rich Low_complexity Low_complexity 1 22 0 2381 275 52 32 chr4 32666518 32668832 -151619830 - L1MCa LINE L1 -2883 4058 1536 255 94 226 0 chr4 32668957 32669010 -151619652 - L1MC2 LINE L1 -23 6321 6257 * 461 167 49 62 chr4 32669007 32669151 -151619511 - L1MCa LINE L1 -4937 1486 1345 499 279 44 0 chr4 32669560 32669743 -151618919 - LTR33A LTR ERVL 0 523 333 186 309 36 55 chr4 32670064 32670174 -151618488 + L2 LINE L2 2282 2389 -925 499 258 62 23 chr4 32670601 32670729 -151617933 - FRAM SINE Alu -19 157 25 582 141 27 49 chr4 32672090 32672274 -151616388 + CT-rich Low_complexity Low_complexity 1 180 0 260 339 49 68 chr4 32672451 32672820 -151615842 + MLT1L LTR MaLR 172 533 -82 2349 136 8 11 chr4 32672828 32673204 -151615458 + THE1C LTR MaLR 1 375 0 9422 129 53 7 chr4 32673204 32674705 -151613957 + THE1C-int LTR MaLR 1 1571 -9 2420 132 3 16 chr4 32674713 32675093 -151613569 + THE1C LTR MaLR 1 375 0 1204 222 94 60 chr4 32675765 32676148 -151612514 - MSTD LTR MaLR 0 396 1 6080 250 57 23 chr4 32676148 32677825 -151610837 - MSTD-int LTR MaLR 0 1735 1 1559 239 33 5 chr4 32677864 32678232 -151610430 - MSTD LTR MaLR -18 378 1 331 304 36 0 chr4 32678994 32679106 -151609556 - MLT1J2 LTR MaLR -71 379 264 4903 234 80 11 chr4 32679133 32680281 -151608381 + MLT1A1-int LTR MaLR 508 1735 0 1182 205 66 28 chr4 32680305 32680593 -151608069 + MLT1A1 LTR MaLR 60 358 -7 2281 96 3 3 chr4 32680995 32681296 -151607366 - AluSg SINE Alu -9 301 1 2867 186 75 34 chr4 32681947 32682652 -151606010 + L1MB4 LINE L1 5445 6178 -2 1594 103 165 11 chr4 32682783 32683044 -151605618 + AluSx SINE Alu 1 301 -11 302 317 137 24 chr4 32683882 32684131 -151604531 + L1ME LINE L1 5533 5809 -312 204 250 19 0 chr4 32684357 32684409 -151604253 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 343 333 68 59 chr4 32686021 32686360 -151602302 + L1MEc LINE L1 38 379 -6017 1284 192 17 17 chr4 32686875 32687115 -151601547 - LTR32 LTR ERVL 0 471 232 466 139 0 0 chr4 32687174 32687246 -151601416 - LTR32 LTR ERVL -385 86 15 226 253 11 11 chr4 32687275 32687370 -151601292 + L1MEc LINE L1 871 965 -5240 320 224 53 11 chr4 32687439 32687555 -151601107 - L1MCa LINE L1 -4780 1646 1388 405 258 117 62 chr4 32687610 32688045 -151600617 - HAL1 LINE L1 -1048 1459 1001 395 331 144 27 chr4 32688122 32688379 -151600283 - HAL1 LINE L1 -1818 689 403 1492 241 26 9 chr4 32688395 32688743 -151599919 - MLT1A1 LTR MaLR -11 354 1 345 354 51 6 chr4 32688763 32688938 -151599724 - HAL1 LINE L1 -2130 377 195 781 222 66 0 chr4 32688986 32689153 -151599509 + MER58A DNA MER1_type 47 224 0 330 341 183 0 chr4 32690018 32690182 -151598480 + MIR SINE MIR 66 259 -3 22 56 0 0 chr4 32690213 32690249 -151598413 + AT_rich Low_complexity Low_complexity 1 36 0 414 162 0 0 chr4 32690475 32690549 -151598113 + (CA)n Simple_repeat Simple_repeat 2 75 0 240 35 0 0 chr4 32690959 32690988 -151597674 + (TTG)n Simple_repeat Simple_repeat 2 30 0 216 214 0 0 chr4 32691939 32691995 -151596667 + (TG)n Simple_repeat Simple_repeat 2 57 0 526 297 18 18 chr4 32692277 32692442 -151596220 + MLT2E LTR ERVL 29 193 -435 1571 138 0 0 chr4 32694334 32694580 -151594082 - Tigger5 DNA MER2_type 0 2323 2078 333 234 26 0 chr4 32694570 32694647 -151594015 - Tigger5 DNA MER2_type -2244 79 1 * 201 367 17 17 chr4 32694749 32694869 -151593793 - MIR SINE MIR -126 136 17 457 293 77 24 chr4 32695744 32695952 -151592710 - MIR SINE MIR -41 221 3 995 258 130 47 chr4 32696079 32696541 -151592121 + MLT2B1 LTR ERVL 9 452 -63 2076 153 15 3 chr4 32696541 32696882 -151591780 + MER7A DNA MER2_type 3 345 -1 995 258 130 47 chr4 32696882 32696930 -151591732 + MLT2B1 LTR ERVL 452 495 -20 239 246 0 0 chr4 32696931 32696996 -151591666 + MLT2B1 LTR ERVL 456 520 0 4875 74 1 3 chr4 32697273 32697925 -151590737 + L1PA8 LINE L1 5516 6166 -6 770 349 77 26 chr4 32698876 32699201 -151589461 + L2 LINE L2 2406 2713 -600 1351 236 143 18 chr4 32699201 32699650 -151589012 - MLT1D LTR MaLR 0 505 1 770 349 77 26 chr4 32699650 32700182 -151588480 + L2 LINE L2 2713 3311 -2 180 282 117 58 chr4 32700950 32701053 -151587609 + L2 LINE L2 3201 3309 -4 283 331 53 41 chr4 32701921 32702090 -151586572 - MIR3 SINE MIR 0 208 38 26 0 0 0 chr4 32702879 32702905 -151585757 + AT_rich Low_complexity Low_complexity 1 26 0 180 440 40 15 chr4 32703062 32703262 -151585400 + L2 LINE L2 2552 2756 -558 205 361 57 16 chr4 32703719 32703841 -151584821 + L2 LINE L2 3122 3248 -24 2535 139 8 54 chr4 32703957 32704439 -151584223 - LTR46 LTR ERV1 0 460 1 195 129 0 0 chr4 32704706 32704737 -151583925 + (TATG)n Simple_repeat Simple_repeat 2 32 0 318 26 0 0 chr4 32705265 32705304 -151583358 + (TG)n Simple_repeat Simple_repeat 1 39 0 185 0 40 0 chr4 32705303 32705328 -151583334 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 188 216 0 0 chr4 32705634 32705671 -151582991 - MIR SINE MIR -11 251 215 346 413 43 14 chr4 32706117 32706466 -151582196 - L2 LINE L2 -489 2825 2467 407 303 86 36 chr4 32707816 32708037 -151580625 - MLT1L LTR MaLR -27 588 357 21 57 0 0 chr4 32708102 32708137 -151580525 + AT_rich Low_complexity Low_complexity 1 35 0 428 259 84 14 chr4 32708858 32709001 -151579661 + MIR SINE MIR 77 229 -33 252 381 79 30 chr4 32709273 32709773 -151578889 + L2 LINE L2 2671 3192 -121 1760 222 62 46 chr4 32710448 32710993 -151577669 + MLT2B3 LTR ERVL 1 554 0 252 281 133 49 chr4 32711319 32711522 -151577140 + MIR SINE MIR 30 249 -13 265 366 60 0 chr4 32712162 32712296 -151576366 + MIR SINE MIR 91 232 -30 248 307 79 26 chr4 32712430 32712544 -151576118 - MIR SINE MIR -123 139 20 21 0 0 0 chr4 32713126 32713147 -151575515 + AT_rich Low_complexity Low_complexity 1 21 0 194 0 39 0 chr4 32714839 32714865 -151573797 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 383 346 60 13 chr4 32715473 32715936 -151572726 + L1ME3A LINE L1 3843 4327 -1819 478 296 148 33 chr4 32716081 32716683 -151571979 + L1ME3A LINE L1 4510 5180 -966 608 314 70 39 chr4 32716759 32717355 -151571307 + L1ME3A LINE L1 5305 5919 -251 21 0 0 0 chr4 32717421 32717442 -151571220 + AT_rich Low_complexity Low_complexity 1 21 0 2092 114 7 0 chr4 32718409 32718717 -151569945 - AluSg SINE Alu 0 310 1 1664 240 48 18 chr4 32719120 32719620 -151569042 + Charlie1b DNA MER1_type 9 523 0 23 0 0 0 chr4 32719821 32719844 -151568818 + AT_rich Low_complexity Low_complexity 1 23 0 25 75 0 32 chr4 32719868 32719961 -151568701 + AT_rich Low_complexity Low_complexity 1 90 0 279 164 45 15 chr4 32720084 32720151 -151568511 - L1ME3 LINE L1 -57 6105 6037 672 291 52 8 chr4 32720178 32720429 -151568233 - L1ME LINE L1 -580 5651 5390 404 291 74 23 chr4 32720562 32720871 -151567791 - L1ME LINE L1 -1023 5192 4868 * 651 246 58 29 chr4 32720867 32721212 -151567450 - L1ME LINE L1 -4070 2326 1972 568 251 105 26 chr4 32721236 32721503 -151567159 - L1ME LINE L1 -4508 1888 1601 233 177 16 113 chr4 32721566 32721628 -151567034 - HAL1 LINE L1 -1645 862 807 34 42 0 0 chr4 32721650 32721698 -151566964 + AT_rich Low_complexity Low_complexity 1 48 0 267 111 0 0 chr4 32721831 32721867 -151566795 - U2 snRNA snRNA -152 36 1 28 0 0 0 chr4 32721950 32721978 -151566684 + AT_rich Low_complexity Low_complexity 1 28 0 231 211 33 0 chr4 32722165 32722255 -151566407 + (TA)n Simple_repeat Simple_repeat 2 94 0 27 0 0 0 chr4 32722275 32722302 -151566360 + AT_rich Low_complexity Low_complexity 1 27 0 24 53 0 0 chr4 32722412 32722450 -151566212 + AT_rich Low_complexity Low_complexity 1 38 0 2151 103 0 26 chr4 32722906 32723217 -151565445 + AluSg SINE Alu 1 303 -7 24 53 0 0 chr4 32723267 32723305 -151565357 + AT_rich Low_complexity Low_complexity 1 38 0 2462 34 10 10 chr4 32723543 32723838 -151564824 + AluY SINE Alu 3 297 -14 653 220 0 0 chr4 32724754 32724895 -151563767 - L1MB1 LINE L1 -3 6165 6025 294 314 25 25 chr4 32724969 32725090 -151563572 + MIR3 SINE MIR 82 202 -6 201 341 179 9 chr4 32727143 32727366 -151561296 + L3 LINE CR1 1228 1488 -89 193 386 0 0 chr4 32728219 32728276 -151560386 - MIR SINE MIR -152 110 54 1926 112 11 0 chr4 32731864 32732150 -151556512 - HERVL-A2 LTR ERVL -5365 289 1 1510 127 26 0 chr4 32732150 32732379 -151556283 - MLT2A2 LTR ERVL 0 453 219 1081 86 0 0 chr4 32732372 32732512 -151556150 - MLT2A1 LTR ERVL -304 140 1 * 336 223 210 45 chr4 32732512 32732669 -151555993 + MER2 DNA MER2_type 163 345 0 4906 186 42 1 chr4 32733374 32734345 -151554317 + L1PA16 LINE L1 4793 5836 -330 333 0 0 0 chr4 32734345 32734382 -151554280 + (CA)n Simple_repeat Simple_repeat 2 38 0 4906 186 42 1 chr4 32734382 32734721 -151553941 + L1PA16 LINE L1 5836 6160 -6 357 223 25 25 chr4 32735139 32735260 -151553402 + MER113 DNA MER1_type? 26 146 -375 1964 195 68 8 chr4 32735601 32735996 -151552666 - MSTB LTR MaLR -7 419 1 204 67 0 0 chr4 32736046 32736076 -151552586 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 2443 64 0 0 chr4 32736126 32736423 -151552239 - AluY SINE Alu -14 297 1 664 292 126 29 chr4 32736907 32737287 -151551375 - LTR50 LTR ERVL -43 752 336 239 308 77 0 chr4 32737397 32737488 -151551174 - LTR50 LTR ERVL -641 154 57 297 0 0 0 chr4 32737503 32737536 -151551126 + (CA)n Simple_repeat Simple_repeat 1 33 0 188 333 0 0 chr4 32737637 32737694 -151550968 + L3 LINE CR1 618 674 -903 2267 109 0 3 chr4 32737876 32738187 -151550475 + AluY SINE Alu 1 310 -1 377 327 20 33 chr4 32738300 32738453 -151550209 - MIR SINE MIR -8 254 104 1687 90 0 9 chr4 32738454 32738687 -151549975 - L1PA11 LINE L1 0 6174 5944 235 37 0 0 chr4 32738689 32738716 -151549946 + L1P4 LINE L1 5850 5876 -287 1931 231 23 50 chr4 32738818 32739333 -151549329 + MLT1D LTR MaLR 1 501 -4 279 0 0 0 chr4 32739423 32739454 -151549208 + (A)n Simple_repeat Simple_repeat 1 31 0 356 287 117 40 chr4 32739514 32739761 -151548901 + L2 LINE L2 2463 2728 -586 23 86 0 0 chr4 32740010 32740068 -151548594 + AT_rich Low_complexity Low_complexity 1 58 0 461 281 80 61 chr4 32740171 32740355 -151548307 - HAL1 LINE L1 -121 2386 2207 213 65 0 0 chr4 32740355 32740386 -151548276 + (CA)n Simple_repeat Simple_repeat 2 32 0 461 281 80 61 chr4 32740386 32740687 -151547975 - HAL1 LINE L1 -300 2207 1886 216 0 0 0 chr4 32740687 32740711 -151547951 + (CAA)n Simple_repeat Simple_repeat 1 24 0 461 281 80 61 chr4 32740711 32740796 -151547866 - HAL1 LINE L1 -621 1886 1804 5869 223 71 12 chr4 32741265 32742944 -151545718 + L1MA7 LINE L1 3287 5064 -1082 4678 170 26 6 chr4 32742924 32743820 -151544842 + L1MA7 LINE L1 5377 6290 -1 * 35 63 0 0 chr4 32743870 32743933 -151544729 + AT_rich Low_complexity Low_complexity 1 63 0 216 214 0 0 chr4 32743937 32743993 -151544669 + (TATATG)n Simple_repeat Simple_repeat 1 56 0 231 217 0 43 chr4 32744004 32744073 -151544589 + (TA)n Simple_repeat Simple_repeat 2 67 0 1450 186 46 52 chr4 32744084 32744472 -151544190 + L1MB1 LINE L1 5783 6168 0 2881 228 56 22 chr4 32744479 32745447 -151543215 + L1ME1 LINE L1 5154 6148 -18 21 0 0 0 chr4 32745452 32745473 -151543189 + AT_rich Low_complexity Low_complexity 1 21 0 237 33 0 0 chr4 32746702 32746732 -151541930 + (TG)n Simple_repeat Simple_repeat 1 30 0 312 0 62 0 chr4 32747115 32747163 -151541499 + (TCTTG)n Simple_repeat Simple_repeat 2 52 0 * 814 161 0 12 chr4 32747160 32747322 -151541340 + CT-rich Low_complexity Low_complexity 2 161 0 1743 181 13 0 chr4 32747322 32747620 -151541042 - AluJb SINE Alu 0 312 11 285 303 43 93 chr4 32747620 32747782 -151540880 - LTR16B LTR ERVL -310 154 1 610 338 44 51 chr4 32748379 32748967 -151539695 - MERVL LTR ERVL -660 4825 4242 554 304 12 0 chr4 32749135 32749303 -151539359 + ERVL LTR ERVL 2565 2734 -3030 2696 274 45 15 chr4 32749311 32750041 -151538621 + ERVL LTR ERVL 3107 3858 -1906 208 236 18 0 chr4 32750349 32750404 -151538258 + GA-rich Low_complexity Low_complexity 5 60 0 459 199 8 15 chr4 32750870 32751001 -151537661 + (TCTA)n Simple_repeat Simple_repeat 2 131 0 2438 81 0 3 chr4 32751382 32751692 -151536970 - AluY SINE Alu -2 309 1 1366 295 25 48 chr4 32753006 32753611 -151535051 + L2 LINE L2 2552 3149 -164 1406 260 62 34 chr4 32753633 32754099 -151534563 + MLT2B1 LTR ERVL 2 480 -40 255 215 0 0 chr4 32754121 32754186 -151534476 + (TA)n Simple_repeat Simple_repeat 1 65 0 319 282 18 18 chr4 32754280 32754390 -151534272 + L2 LINE L2 3146 3255 -58 22 0 0 0 chr4 32755415 32755437 -151533225 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr4 32755595 32755620 -151533042 + AT_rich Low_complexity Low_complexity 1 25 0 1786 162 24 27 chr4 32755818 32756194 -151532468 - THE1C LTR MaLR 0 375 1 220 414 40 0 chr4 32756220 32756319 -151532343 + L2 LINE L2 3137 3239 -33 301 311 104 49 chr4 32756659 32756904 -151531758 + MIR SINE MIR 7 262 0 252 333 98 89 chr4 32757307 32757553 -151531109 + L2 LINE L2 2929 3176 -96 2527 99 96 10 chr4 32757740 32758145 -151530517 + LTR7 LTR ERV1 1 440 -10 1978 81 0 0 chr4 32758155 32758427 -151530235 + HERVH LTR ERV1 1 272 -7441 10862 116 21 36 chr4 32758427 32760361 -151528301 + HERVH LTR ERV1 1213 3288 -4425 3963 133 105 29 chr4 32760362 32761749 -151526913 - pTR5 LTR ERV1 0 2606 1524 9929 130 34 17 chr4 32761753 32763376 -151525286 + HERVH LTR ERV1 3500 5149 -2564 2710 92 47 12 chr4 32763393 32763815 -151524847 + HERVH LTR ERV1 7277 7713 0 2485 97 97 7 chr4 32763815 32764226 -151524436 + LTR7 LTR ERV1 1 448 -2 269 281 66 79 chr4 32764843 32764992 -151523670 + MIR SINE MIR 46 194 -63 1397 251 76 21 chr4 32765177 32765507 -151523155 - MLT2F LTR ERVL 0 663 353 342 0 0 0 chr4 32765507 32765545 -151523117 + (CA)n Simple_repeat Simple_repeat 2 39 0 1397 251 76 21 chr4 32765545 32765799 -151522863 - MLT2F LTR ERVL -310 353 1 22 70 0 0 chr4 32767146 32767189 -151521473 + AT_rich Low_complexity Low_complexity 1 43 0 712 284 123 7 chr4 32767221 32767506 -151521156 - LTR50 LTR ERVL -7 788 471 328 230 70 117 chr4 32767618 32767848 -151520814 - LTR50 LTR ERVL -576 219 1 34 0 0 0 chr4 32768293 32768327 -151520335 + AT_rich Low_complexity Low_complexity 1 34 0 24 32 0 0 chr4 32769961 32769992 -151518670 + AT_rich Low_complexity Low_complexity 1 31 0 543 74 0 0 chr4 32770559 32770640 -151518022 - L1PA13 LINE L1 -3 6160 6080 1833 147 25 4 chr4 32770821 32770940 -151517722 + AluSx SINE Alu 1 116 -196 189 0 0 0 chr4 32770940 32770961 -151517701 + (CTA)n Simple_repeat Simple_repeat 1 21 0 1833 147 25 4 chr4 32770961 32771120 -151517542 + AluSx SINE Alu 116 285 -27 828 271 78 8 chr4 32771181 32771661 -151517001 - L1MD2 LINE L1 -54 6699 6036 682 191 0 18 chr4 32771710 32771878 -151516784 + C-rich Low_complexity Low_complexity 2 166 0 6355 254 66 35 chr4 32771924 32775552 -151513110 - L1MD2 LINE L1 -743 5797 2235 227 244 0 0 chr4 32775798 32775843 -151512819 + MIR SINE MIR 189 233 -29 372 367 114 8 chr4 32776094 32776358 -151512304 + LTR16A LTR ERVL 159 450 0 1479 186 20 57 chr4 32776894 32777248 -151511414 - MLT1B LTR MaLR -49 341 1 5576 112 25 2 chr4 32777685 32778582 -151510080 - L1PA13 LINE L1 -4 6159 5060 1835 185 180 5 chr4 32778581 32779019 -151509643 + L1PA13 LINE L1 4520 5034 -1112 * 14174 194 29 9 chr4 32779305 32785262 -151503400 - L1PB1 LINE L1 -1 6866 636 1062 130 76 0 chr4 32785264 32785449 -151503213 - L1PB1 LINE L1 -6663 200 2 269 307 11 11 chr4 32785678 32785766 -151502896 + CT-rich Low_complexity Low_complexity 4 91 0 363 242 108 0 chr4 32786063 32786183 -151502479 - MER115 DNA AcHobo -12 681 549 491 369 25 41 chr4 32786321 32786635 -151502027 - MER115 DNA AcHobo -323 370 62 2405 161 16 32 chr4 32788650 32789045 -151499617 - Tigger2a DNA MER2_type -2275 433 44 2172 106 0 7 chr4 32789045 32789347 -151499315 + AluY SINE Alu 3 302 -9 2405 161 16 32 chr4 32789347 32789391 -151499271 - Tigger2a DNA MER2_type -2664 44 1 25 83 0 0 chr4 32789581 32789641 -151499021 + AT_rich Low_complexity Low_complexity 1 60 0 263 203 8 25 chr4 32790218 32790336 -151498326 + (TA)n Simple_repeat Simple_repeat 2 117 0 182 133 33 33 chr4 32791509 32791569 -151497093 + (CATATA)n Simple_repeat Simple_repeat 5 64 0 189 382 32 49 chr4 32793387 32793510 -151495152 + L2 LINE L2 3193 3313 0 654 228 110 14 chr4 32793696 32793915 -151494747 - LTR18B LTR ERVL -9 605 366 728 271 59 20 chr4 32793976 32794179 -151494483 - LTR18A LTR ERVL -146 211 1 297 182 0 0 chr4 32794286 32794330 -151494332 - HERVL18 LTR ERVL -874 5173 5130 * 2357 152 18 18 chr4 32794323 32794672 -151493990 - HERVL18 LTR ERVL -1266 4781 4430 3101 63 78 2 chr4 32794672 32795085 -151493577 - MLT2A1 LTR ERVL 0 444 1 2357 152 18 18 chr4 32795085 32795123 -151493539 - HERVL18 LTR ERVL -1616 4431 4394 9524 143 16 11 chr4 32795125 32796579 -151492083 - HERVL18 LTR ERVL -2468 3579 2119 1413 171 3 21 chr4 32796578 32796940 -151491722 - HERVL18 LTR ERVL -4237 1810 1340 * 1460 187 34 4 chr4 32796942 32797210 -151491452 - HERVL18 LTR ERVL -5304 743 468 1205 190 7 1 chr4 32797200 32797471 -151491191 - HERVL18 LTR ERVL -5743 304 1 * 723 241 109 45 chr4 32797471 32797791 -151490871 - LTR18A LTR ERVL 0 357 20 292 159 0 0 chr4 32797793 32797837 -151490825 - LTR18A LTR ERVL -313 44 1 24 0 0 0 chr4 32798649 32798673 -151489989 + AT_rich Low_complexity Low_complexity 1 24 0 841 321 63 46 chr4 32800201 32800860 -151487802 - L2 LINE L2 -88 3225 2541 1038 242 50 14 chr4 32800883 32801160 -151487502 - L1MA10 LINE L1 -16 6318 6032 496 335 112 0 chr4 32801322 32801555 -151487107 - L2 LINE L2 -1218 2096 1838 1349 288 66 84 chr4 32802110 32803142 -151485520 + L2 LINE L2 2292 3305 -8 211 239 36 116 chr4 32803156 32803294 -151485368 - MIR SINE MIR -65 197 71 7471 33 0 1 chr4 32803330 32804738 -151483924 + L1PA3 LINE L1 4771 6177 0 22 0 0 0 chr4 32805175 32805197 -151483465 + AT_rich Low_complexity Low_complexity 1 22 0 2064 109 0 11 chr4 32806090 32806375 -151482287 - AluSc SINE Alu -8 301 20 22 35 0 0 chr4 32806641 32806670 -151481992 + AT_rich Low_complexity Low_complexity 1 29 0 291 130 0 0 chr4 32807242 32807296 -151481366 + (CAT)n Simple_repeat Simple_repeat 3 56 0 232 309 47 73 chr4 32807444 32807635 -151481027 + MIR SINE MIR 53 238 -24 496 233 106 42 chr4 32808040 32808229 -151480433 + MIR SINE MIR 13 213 -49 252 326 52 30 chr4 32808867 32809002 -151479660 + L2 LINE L2 3175 3312 -1 214 184 0 0 chr4 32809382 32809420 -151479242 + MIR SINE MIR 80 117 -145 430 307 22 0 chr4 32809461 32809598 -151479064 + MIR SINE MIR 79 218 -44 1143 212 81 28 chr4 32811422 32811818 -151476844 - Charlie1 DNA MER1_type -2 2759 2343 241 302 0 16 chr4 32811817 32811880 -151476782 - Charlie1 DNA MER1_type -2691 70 9 * 419 345 65 0 chr4 32811982 32812182 -151476480 - MIR SINE MIR -44 218 6 1349 228 12 0 chr4 32812484 32812739 -151475923 + Tigger7 DNA MER2_type 10 267 -466 322 200 0 0 chr4 32812738 32812793 -151475869 + Tigger7 DNA MER2_type 2394 2448 -43 * 264 370 40 23 chr4 32813632 32813805 -151474857 - MLT1J LTR MaLR -94 417 242 188 356 25 25 chr4 32814010 32814128 -151474534 - L2 LINE L2 0 3313 3196 3804 250 21 9 chr4 32814128 32815291 -151473371 - L1P LINE L1 -2481 3665 2489 561 186 103 26 chr4 32815302 32815458 -151473204 + L1 LINE L1 3658 3825 -2321 * 3482 213 32 10 chr4 32815432 32816312 -151472350 + L1MA2 LINE L1 2958 3856 -2290 5869 163 46 4 chr4 32816316 32817825 -151470837 + L1MA2 LINE L1 4720 6297 -7 6069 191 20 30 chr4 32817834 32818174 -151470488 + L1PA15 LINE L1 3775 4117 -2048 2145 182 39 10 chr4 32818174 32818586 -151470076 - MSTA LTR MaLR 0 428 5 8573 183 36 10 chr4 32818588 32818672 -151469990 - MSTA-int LTR MaLR 0 1651 1571 2145 116 0 23 chr4 32818672 32818843 -151469819 - AluSp SINE Alu -17 296 133 180 0 0 0 chr4 32818843 32818863 -151469799 + (TA)n Simple_repeat Simple_repeat 1 20 0 2145 116 0 23 chr4 32818863 32818993 -151469669 - AluSp SINE Alu -180 133 2 8573 183 36 10 chr4 32818993 32820517 -151468145 - MSTA-int LTR MaLR -80 1571 1 2099 168 75 10 chr4 32820517 32820917 -151467745 - MSTA LTR MaLR 0 428 3 6069 191 20 30 chr4 32820917 32821015 -151467647 + L1PA15 LINE L1 4117 4214 -1951 1936 135 7 0 chr4 32821015 32821297 -151467365 - AluSx SINE Alu -17 295 12 6069 191 20 30 chr4 32821297 32821617 -151467045 + L1PA15 LINE L1 4214 4536 -1629 1792 159 24 0 chr4 32821617 32821907 -151466755 + AluSx SINE Alu 3 299 -13 6069 191 20 30 chr4 32821907 32822881 -151465781 + L1PA15 LINE L1 4536 5483 -682 2227 87 0 13 chr4 32822881 32823192 -151465470 + AluY SINE Alu 1 307 -4 6069 191 20 30 chr4 32823192 32823863 -151464799 + L1PA15 LINE L1 5483 6159 -6 369 315 173 21 chr4 32823890 32824281 -151464381 - L2 LINE L2 -135 3178 2733 221 336 112 0 chr4 32824415 32824522 -151464140 - MIR SINE MIR -95 167 49 557 177 93 0 chr4 32824586 32824617 -151464045 - L1MB1 LINE L1 -331 5837 5810 330 26 0 0 chr4 32824617 32824656 -151464006 + (TA)n Simple_repeat Simple_repeat 2 40 0 557 177 93 0 chr4 32824656 32824764 -151463898 - L1MB1 LINE L1 -358 5810 5669 3760 202 48 1 chr4 32824766 32825523 -151463139 + MER6 DNA MER2_type 70 861 -4 2753 245 29 7 chr4 32825524 32826364 -151462298 - L1 LINE L1 -2396 3814 2957 10392 181 31 8 chr4 32826373 32828595 -151460067 - L1MA2 LINE L1 0 7723 5404 2173 107 0 16 chr4 32828595 32828904 -151459758 - AluSc SINE Alu -5 304 1 10392 181 31 8 chr4 32828904 32829995 -151458667 - L1MA2 LINE L1 -2319 5404 4339 5123 214 23 13 chr4 32829991 32831044 -151457618 - L1MA2 LINE L1 -6487 1078 16 * 4555 260 82 38 chr4 32831048 32832694 -151455968 - L1 LINE L1 -3233 2977 1404 222 91 0 0 chr4 32832694 32832727 -151455935 + (TG)n Simple_repeat Simple_repeat 2 34 0 4555 260 82 38 chr4 32832727 32832943 -151455719 - L1 LINE L1 -4806 1404 1199 192 40 0 0 chr4 32832943 32832968 -151455694 + (TC)n Simple_repeat Simple_repeat 2 26 0 4555 260 82 38 chr4 32832968 32834265 -151454397 - L1 LINE L1 -5011 1199 3 327 49 0 0 chr4 32834889 32834930 -151453732 + (CA)n Simple_repeat Simple_repeat 2 42 0 284 299 0 0 chr4 32835406 32835483 -151453179 - MLT1L LTR MaLR -536 79 3 261 298 164 19 chr4 32835501 32835605 -151453057 + MIR SINE MIR 49 167 -95 484 193 0 55 chr4 32835619 32835728 -151452934 + FLAM_C SINE Alu 39 141 -2 23 33 0 0 chr4 32835728 32835758 -151452904 + AT_rich Low_complexity Low_complexity 1 30 0 21 71 0 0 chr4 32836047 32836089 -151452573 + AT_rich Low_complexity Low_complexity 1 42 0 404 329 81 24 chr4 32836473 32836719 -151451943 - MIR SINE MIR 0 262 3 28 61 0 0 chr4 32837576 32837625 -151451037 + AT_rich Low_complexity Low_complexity 1 49 0 975 201 80 128 chr4 32838075 32838474 -151450188 - MER67C LTR ERV1 -2 512 95 2076 98 3 7 chr4 32838474 32838759 -151449903 + AluSx SINE Alu 13 296 -16 438 20 0 0 chr4 32838768 32838819 -151449843 + (CA)n Simple_repeat Simple_repeat 2 52 0 975 201 80 128 chr4 32838819 32838936 -151449726 - MER67C LTR ERV1 -427 87 11 564 40 0 0 chr4 32839682 32839756 -151448906 + AluY SINE Alu 231 304 -8 393 75 0 0 chr4 32839756 32839809 -151448853 + (TA)n Simple_repeat Simple_repeat 2 54 0 27 0 0 0 chr4 32839881 32839908 -151448754 + AT_rich Low_complexity Low_complexity 1 27 0 1547 90 0 0 chr4 32840006 32840206 -151448456 - AluSc SINE Alu -22 287 88 915 105 7 14 chr4 32840206 32840349 -151448313 + AluSg/x SINE Alu 170 311 -1 205 284 148 11 chr4 32840349 32840437 -151448225 - L2 LINE L2 -589 2725 2626 286 292 76 40 chr4 32843054 32843355 -151445307 - L1ME4a LINE L1 -181 5940 5629 213 186 17 17 chr4 32844985 32845044 -151443618 + (TA)n Simple_repeat Simple_repeat 1 59 0 939 201 70 5 chr4 32845525 32845724 -151442938 - AluJb SINE Alu -16 296 85 253 317 21 35 chr4 32846673 32846815 -151441847 - L2 LINE L2 -1067 2247 2108 21 89 0 0 chr4 32846924 32846980 -151441682 + AT_rich Low_complexity Low_complexity 1 56 0 3246 100 7 0 chr4 32847173 32847623 -151441039 + MLT2A2 LTR ERVL 1 453 0 21 95 0 0 chr4 32848397 32848460 -151440202 + AT_rich Low_complexity Low_complexity 1 63 0 22 70 0 0 chr4 32849637 32849680 -151438982 + AT_rich Low_complexity Low_complexity 1 43 0 445 311 68 37 chr4 32850217 32850645 -151438017 + L1MDa LINE L1 1534 1974 -4566 4216 40 28 4 chr4 32850679 32851208 -151437454 - L1PA5 LINE L1 0 6154 5613 22 35 0 0 chr4 32851439 32851468 -151437194 + AT_rich Low_complexity Low_complexity 1 29 0 348 346 64 26 chr4 32852076 32852342 -151436320 + L1ME LINE L1 5530 5805 -316 7333 197 39 18 chr4 32852351 32854295 -151434367 + L1PB4 LINE L1 3488 5480 -744 2670 196 22 75 chr4 32854409 32855127 -151433535 + L1PB4 LINE L1 5476 6155 -1 315 173 63 16 chr4 32855380 32855507 -151433155 + (TA)n Simple_repeat Simple_repeat 1 133 0 322 266 43 103 chr4 32855553 32855737 -151432925 + MIR SINE MIR 46 218 -44 2044 142 0 0 chr4 32855866 32856176 -151432486 - AluSx SINE Alu -2 310 1 1844 118 73 0 chr4 32856920 32857209 -151431453 - AluSx SINE Alu -2 310 1 21 36 0 0 chr4 32859766 32859794 -151428868 + AT_rich Low_complexity Low_complexity 1 28 0 12408 123 15 29 chr4 32859820 32860881 -151427781 + L1PA6 LINE L1 11 1031 -5115 2238 100 3 3 chr4 32860881 32861190 -151427472 - AluY SINE Alu 0 311 3 12408 123 15 29 chr4 32861190 32862150 -151426512 + L1PA6 LINE L1 1031 2003 -4143 16695 76 1 0 chr4 32862150 32865202 -151423460 + L1PA6 LINE L1 3091 6153 -1 2266 267 63 36 chr4 32865202 32865959 -151422703 + L1MC/D LINE L1 113 890 -5969 1199 197 29 0 chr4 32865959 32866203 -151422459 - MER57A LTR ERV1 0 403 153 2353 146 5 8 chr4 32866203 32866579 -151422083 - THE1C LTR MaLR 0 375 1 9847 129 42 3 chr4 32866588 32868096 -151420566 - THE1C-int LTR MaLR -10 1570 4 2432 118 5 13 chr4 32868096 32868470 -151420192 - THE1C LTR MaLR -4 371 1 717 183 0 0 chr4 32868474 32868600 -151420062 - MER57A LTR ERV1 -250 153 28 3118 213 51 20 chr4 32868601 32869522 -151419140 + L1MC/D LINE L1 922 1868 -4987 835 225 62 0 chr4 32869532 32869710 -151418952 - MLT1D LTR MaLR 0 505 317 57 61 0 0 chr4 32870227 32870326 -151418336 + AT_rich Low_complexity Low_complexity 1 99 0 584 246 39 35 chr4 32871205 32871461 -151417201 + L1MC/D LINE L1 3301 3557 -3400 466 77 0 0 chr4 32871462 32871527 -151417135 + L1PA4 LINE L1 6083 6147 -8 607 229 84 49 chr4 32871531 32871918 -151416744 + L1MC/D LINE L1 3662 4039 -2918 * 1913 179 99 11 chr4 32871890 32872326 -151416336 + L1MC/D LINE L1 6065 6538 -515 2082 124 0 0 chr4 32872693 32872992 -151415670 - AluSc SINE Alu -10 299 1 238 317 166 55 chr4 32873109 32873391 -151415271 + L2 LINE L2 1836 2176 -1138 1959 155 0 13 chr4 32873391 32873708 -151414954 - AluSq SINE Alu 0 313 1 238 317 166 55 chr4 32873708 32873823 -151414839 + L2 LINE L2 2176 2277 -1037 2267 92 0 16 chr4 32874059 32874364 -151414298 + AluSg SINE Alu 1 300 -10 587 287 70 41 chr4 32874481 32874725 -151413937 - MIR SINE MIR 0 262 12 201 250 73 15 chr4 32874844 32874912 -151413750 + L3 LINE CR1 215 286 -1291 304 347 79 32 chr4 32875903 32876272 -151412390 - L2 LINE L2 -2 3311 2926 306 177 25 13 chr4 32877039 32877118 -151411544 + L1MD1 LINE L1 6152 6231 -11 362 270 70 87 chr4 32877143 32877328 -151411334 + MLT1G LTR MaLR 92 273 -317 212 308 0 0 chr4 32877572 32877637 -151411025 + CT-rich Low_complexity Low_complexity 3 67 0 1451 335 101 44 chr4 32877796 32878974 -151409688 - L2 LINE L2 -297 3016 1764 205 211 0 0 chr4 32879038 32879076 -151409586 - MIR SINE MIR -108 154 117 199 171 0 0 chr4 32879856 32879891 -151408771 - L2 LINE L2 0 3272 3238 493 248 47 0 chr4 32879901 32880030 -151408632 - L2 LINE L2 0 3313 3179 641 34 0 22 chr4 32880734 32880823 -151407839 + (TCTA)n Simple_repeat Simple_repeat 4 90 0 274 273 0 11 chr4 32881183 32881271 -151407391 - L1MC4 LINE L1 -1339 6703 6617 664 117 22 39 chr4 32881293 32881473 -151407189 + (TATG)n Simple_repeat Simple_repeat 2 178 0 288 177 52 31 chr4 32881473 32881569 -151407093 + (TATATG)n Simple_repeat Simple_repeat 5 102 0 250 138 35 17 chr4 32881569 32881627 -151407035 - L1MCa LINE L1 -4362 2064 2006 229 191 0 0 chr4 32881608 32881655 -151407007 - L1MC4 LINE L1 -1339 6703 6657 * 250 313 71 36 chr4 32881667 32881779 -151406883 - MIR SINE MIR -72 190 75 2410 144 44 2 chr4 32882057 32882468 -151406194 - MSTA LTR MaLR 0 428 1 309 277 20 10 chr4 32882473 32882574 -151406088 + L1MEd LINE L1 57 158 -5961 254 231 65 112 chr4 32882618 32882787 -151405875 + L1MEd LINE L1 274 434 -5685 218 298 21 32 chr4 32884011 32884105 -151404557 - L2 LINE L2 -87 3226 3134 217 93 23 23 chr4 32884973 32885016 -151403646 + (TA)n Simple_repeat Simple_repeat 1 43 0 21 36 0 0 chr4 32886780 32886808 -151401854 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr4 32887218 32887241 -151401421 + AT_rich Low_complexity Low_complexity 1 23 0 594 273 53 19 chr4 32887526 32887735 -151400927 - MER20 DNA MER1_type 0 219 4 376 254 189 6 chr4 32887814 32887983 -151400679 + Charlie2 DNA MER1_type 318 517 -2265 487 133 0 20 chr4 32888014 32888112 -151400550 + (GGAA)n Simple_repeat Simple_repeat 3 98 0 661 104 0 17 chr4 32888220 32888335 -151400327 + (GGAA)n Simple_repeat Simple_repeat 3 115 0 2150 131 0 0 chr4 32889366 32889678 -151398984 - AluSx SINE Alu 0 312 1 319 243 0 14 chr4 32890640 32890714 -151397948 + Tigger5 DNA MER2_type 7 79 -2244 401 213 25 0 chr4 32890763 32890843 -151397819 + Tigger5 DNA MER2_type 2242 2323 0 387 41 0 0 chr4 32891063 32891112 -151397550 + (CA)n Simple_repeat Simple_repeat 2 50 0 459 152 0 0 chr4 32892687 32892766 -151395896 + (TG)n Simple_repeat Simple_repeat 2 80 0 27 49 0 0 chr4 32893112 32893153 -151395509 + AT_rich Low_complexity Low_complexity 1 41 0 25 0 0 0 chr4 32893647 32893672 -151394990 + AT_rich Low_complexity Low_complexity 1 25 0 2018 117 3 7 chr4 32893826 32894116 -151394546 - AluSq SINE Alu -24 289 1 1295 180 63 4 chr4 32894175 32894414 -151394248 - AluJo SINE Alu -47 265 13 738 250 47 5 chr4 32894441 32894633 -151394029 + L1M4c LINE L1 17 216 -6168 4406 147 90 35 chr4 32894633 32895642 -151393020 + pTR5 LTR ERV1 743 2021 -417 322 257 10 0 chr4 32895643 32895744 -151392918 + LTR30 LTR ERV1 541 642 -80 2314 93 0 0 chr4 32895744 32896067 -151392595 + pTR5 LTR ERV1 66 388 -2050 1558 210 44 26 chr4 32896067 32896410 -151392252 + L1M4c LINE L1 209 557 -5827 692 94 17 3 chr4 32896422 32896657 -151392005 + AluSx SINE Alu 1 297 -15 694 122 0 0 chr4 32896700 32896807 -151391855 + AluSg/x SINE Alu 203 309 0 895 188 30 20 chr4 32896809 32897006 -151391656 + L1M4c LINE L1 570 768 -5616 1291 248 39 3 chr4 32897006 32897292 -151391370 + MLT1A1 LTR MaLR 1 296 -69 1290 214 33 85 chr4 32897292 32897690 -151390972 + MLT2B3 LTR ERVL 1 377 -177 2056 99 0 64 chr4 32897692 32897880 -151390782 - AluSx SINE Alu -3 309 111 213 45 45 23 chr4 32897880 32897924 -151390738 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 2178 90 0 0 chr4 32897924 32898202 -151390460 - AluY SINE Alu -30 281 4 2056 99 0 64 chr4 32898202 32898324 -151390338 - AluSx SINE Alu -199 113 18 4238 102 23 58 chr4 32898410 32899743 -151388919 - pTR5 LTR ERV1 0 2468 1524 279 0 0 0 chr4 32901619 32901650 -151387012 + (TG)n Simple_repeat Simple_repeat 2 32 0 503 198 16 8 chr4 32901839 32901965 -151386697 - L1 LINE L1 -804 5342 5216 383 179 0 12 chr4 32901953 32902037 -151386625 - L1M4c LINE L1 -5190 1194 1112 * 2792 230 19 20 chr4 32902027 32902501 -151386161 + L1MC3 LINE L1 7066 7540 -245 1904 154 12 35 chr4 32902501 32902846 -151385816 - MER1B DNA MER1_type 0 337 1 2792 230 19 20 chr4 32902846 32903075 -151385587 + L1MC3 LINE L1 7540 7768 -17 1347 195 61 0 chr4 32903092 32903293 -151385369 + L1 LINE L1 4234 4421 -1725 2164 118 7 0 chr4 32903293 32903597 -151385065 + AluSp SINE Alu 1 306 -7 1347 195 61 0 chr4 32903597 32903754 -151384908 + L1 LINE L1 4421 4614 -1532 969 261 12 0 chr4 32903754 32903999 -151384663 + L1MB3 LINE L1 4013 4260 -1886 719 257 0 11 chr4 32904013 32904196 -151384466 + L1MB3 LINE L1 4735 4915 -1231 1545 249 2 2 chr4 32904198 32904592 -151384070 - L1 LINE L1 -979 5167 4774 317 250 40 0 chr4 32904608 32904708 -151383954 + L1MB3 LINE L1 5579 5682 -489 10485 147 40 30 chr4 32904709 32906626 -151382036 - Tigger1 DNA MER2_type 0 2418 483 240 266 64 11 chr4 32906650 32906676 -151381986 - L1MA4A LINE L1 -15 6288 6263 3671 179 29 8 chr4 32906676 32907424 -151381238 - L1PB4 LINE L1 -23 6133 5370 879 166 13 0 chr4 32907425 32907576 -151381086 - Tigger1 DNA MER2_type -1936 482 330 827 215 31 20 chr4 32907574 32907769 -151380893 - Tigger1 DNA MER2_type -2221 197 1 * 2267 164 17 54 chr4 32907769 32908226 -151380436 + L1MB3 LINE L1 5682 6119 -64 2064 134 10 0 chr4 32908226 32908524 -151380138 + AluSx SINE Alu 1 301 -11 2267 164 17 54 chr4 32908524 32908583 -151380079 + L1MB3 LINE L1 6119 6179 -4 278 344 36 18 chr4 32908646 32909036 -151379626 + L1 LINE L1 3842 4238 -1908 362 248 41 25 chr4 32909301 32909422 -151379240 + L1ME2 LINE L1 3602 3724 -2422 2743 277 78 23 chr4 32909447 32911113 -151377549 + L1ME2 LINE L1 3807 5563 -601 2026 160 6 17 chr4 32911113 32911464 -151377198 + THE1C LTR MaLR 1 401 -27 441 87 0 14 chr4 32911572 32911641 -151377021 - L1PB1 LINE L1 -28 6123 6056 3124 217 18 3 chr4 32911644 32912372 -151376290 + L1 LINE L1 4663 5401 -745 1097 217 114 89 chr4 32912394 32912471 -151376191 + L1ME2 LINE L1 5539 5613 -551 186 103 0 0 chr4 32912471 32912500 -151376162 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 1097 217 114 89 chr4 32912500 32912576 -151376086 + L1ME2 LINE L1 5613 5686 -478 1894 119 0 0 chr4 32912576 32912829 -151375833 + AluSg SINE Alu 1 253 -57 1097 217 114 89 chr4 32912829 32913238 -151375424 + L1ME2 LINE L1 5686 6143 -21 811 260 215 16 chr4 32913261 32913395 -151375267 + L1MC4 LINE L1 6473 6579 -1463 288 0 0 0 chr4 32913395 32913427 -151375235 + (TG)n Simple_repeat Simple_repeat 1 32 0 811 260 215 16 chr4 32913427 32913789 -151374873 + L1MC4 LINE L1 6579 7068 -974 201 74 0 0 chr4 32913790 32913817 -151374845 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1050 262 123 62 chr4 32913873 32914659 -151374003 + L1MC4 LINE L1 7209 8042 0 2019 179 41 24 chr4 32914669 32915171 -151373491 + MLT2A2 LTR ERVL 1 510 -44 235 132 26 92 chr4 32915169 32915245 -151373417 + MLT2C2 LTR ERVL 393 463 -1 * 376 242 58 127 chr4 32915286 32915546 -151373116 + HAL1 LINE L1 378 619 -1888 405 254 65 7 chr4 32915669 32915807 -151372855 + L2 LINE L2 2376 2521 -793 273 303 36 51 chr4 32915907 32916102 -151372560 + L2 LINE L2 3119 3310 -3 242 306 111 9 chr4 32916285 32916393 -151372269 - MIR SINE MIR -72 190 72 1998 220 82 11 chr4 32916411 32917169 -151371493 - L1ME1 LINE L1 -3 6581 5740 2774 259 45 38 chr4 32917249 32918628 -151370034 - L1ME1 LINE L1 -2691 3873 2526 729 284 68 46 chr4 32918813 32919309 -151369353 - L1MC4a LINE L1 -303 5818 5392 957 356 141 22 chr4 32919339 32920339 -151368323 - L3 LINE CR1 -166 1411 293 948 82 8 0 chr4 32920369 32920503 -151368159 - L1PB1 LINE L1 0 6151 6017 2717 251 67 13 chr4 32920503 32921633 -151367029 - L1ME1 LINE L1 -4605 1959 671 278 250 15 0 chr4 32921634 32921702 -151366960 + L1M4b LINE L1 435 503 -6356 554 294 68 36 chr4 32921735 32921987 -151366675 + MIR SINE MIR 1 260 -2 22 0 0 0 chr4 32921991 32922013 -151366649 + AT_rich Low_complexity Low_complexity 1 22 0 774 202 6 17 chr4 32922119 32922292 -151366370 + LTR56 LTR ERV1 10 180 -265 191 307 67 13 chr4 32922293 32922368 -151366294 - MER5A DNA MER1_type -103 86 8 342 0 0 0 chr4 32923717 32923755 -151364907 + (CA)n Simple_repeat Simple_repeat 1 38 0 21 89 0 0 chr4 32924960 32925016 -151363646 + AT_rich Low_complexity Low_complexity 1 56 0 2239 111 0 0 chr4 32925218 32925525 -151363137 + AluY SINE Alu 1 307 -4 778 310 43 21 chr4 32926529 32926858 -151361804 - MLT1I LTR MaLR -55 354 19 1709 195 76 22 chr4 32926974 32927380 -151361282 - MSTA LTR MaLR 0 428 1 313 316 14 18 chr4 32927873 32928091 -151360571 + L1 LINE L1 3884 4100 -2046 285 305 42 0 chr4 32928189 32928284 -151360378 + L2 LINE L2 2293 2391 -923 286 265 100 41 chr4 32928290 32928460 -151360202 - MLT1F1 LTR MaLR -5 562 383 25 0 0 0 chr4 32928583 32928608 -151360054 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr4 32928794 32928817 -151359845 + AT_rich Low_complexity Low_complexity 1 23 0 203 233 47 12 chr4 32928985 32929071 -151359591 + (TTATA)n Simple_repeat Simple_repeat 2 90 0 932 259 27 23 chr4 32929094 32929357 -151359305 - L1ME LINE L1 -345 5776 5513 22 0 0 0 chr4 32929552 32929574 -151359088 + AT_rich Low_complexity Low_complexity 1 22 0 206 202 37 55 chr4 32929612 32929721 -151358941 + T-rich Low_complexity Low_complexity 3 109 0 504 165 0 0 chr4 32929779 32929892 -151358770 - AluSg/x SINE Alu 0 309 197 183 261 34 80 chr4 32932673 32932761 -151355901 - MIR3 SINE MIR -17 191 108 1657 143 56 0 chr4 32932991 32933321 -151355341 - AluSx SINE Alu 0 345 1 313 300 0 0 chr4 32933322 32933392 -151355270 + Tigger5 DNA MER2_type 2254 2323 0 686 270 92 65 chr4 32933931 32934728 -151353934 - L1ME LINE L1 -1235 4911 4094 395 306 25 16 chr4 32934839 32934960 -151353702 - L2 LINE L2 -1 3312 3191 394 321 57 28 chr4 32935700 32936301 -151352361 - L1ME LINE L1 -2404 3742 3125 206 31 0 31 chr4 32937875 32937907 -151350755 + (TTATA)n Simple_repeat Simple_repeat 2 32 0 830 209 0 0 chr4 32937907 32938055 -151350607 - FRAM SINE Alu -29 147 1 3039 177 9 2 chr4 32938078 32938610 -151350052 - L1PA16 LINE L1 -1 6165 5630 2258 137 14 13 chr4 32938610 32939076 -151349586 + L1PA16 LINE L1 5158 5625 -541 24 32 0 0 chr4 32940069 32940100 -151348562 + AT_rich Low_complexity Low_complexity 1 31 0 354 372 25 15 chr4 32940130 32940326 -151348336 - MIR SINE MIR -58 204 7 21 0 0 0 chr4 32940370 32940391 -151348271 + AT_rich Low_complexity Low_complexity 1 21 0 198 301 39 48 chr4 32940417 32940520 -151348142 - MIR SINE MIR -48 214 113 225 163 0 0 chr4 32940810 32940859 -151347803 + (CA)n Simple_repeat Simple_repeat 2 50 0 455 320 7 0 chr4 32941150 32941297 -151347365 - L3 LINE CR1 -154 1423 1276 2355 35 0 3 chr4 32941621 32941905 -151346757 + L1PA3 LINE L1 5870 6152 -3 636 230 69 39 chr4 32942065 32942269 -151346393 - MER76 LTR ERV 0 688 479 383 254 6 95 chr4 32942285 32942454 -151346208 + MLT1H LTR MaLR 394 547 -2 2175 121 0 0 chr4 32942642 32942949 -151345713 - AluSg SINE Alu -3 307 1 294 223 170 0 chr4 32943738 32943832 -151344830 + L2 LINE L2 3199 3308 -5 309 222 0 33 chr4 32943872 32943962 -151344700 + GA-rich Low_complexity Low_complexity 2 88 0 322 233 0 35 chr4 32944255 32944341 -151344321 + L2 LINE L2 978 1060 -2254 3679 157 42 10 chr4 32944506 32945201 -151343461 - L1MA2 LINE L1 -1 7722 7006 4001 186 38 2 chr4 32945201 32946039 -151342623 - L1MA2 LINE L1 -920 6645 5778 * 8040 181 56 9 chr4 32946032 32948994 -151339668 - L1MA2 LINE L1 -2272 5293 2184 583 300 39 46 chr4 32999236 32999496 -151289166 + MIR SINE MIR 2 259 -3 332 221 105 0 chr4 32999521 32999607 -151289055 - MSTB1 LTR MaLR 0 432 338 1527 193 129 27 chr4 32999761 33000165 -151288497 - L1MB8 LINE L1 -7 6171 5727 * 3346 261 50 29 chr4 33000158 33001120 -151287542 - L1M4b LINE L1 -5877 982 1 1981 143 3 7 chr4 33001125 33001433 -151287229 + AluSx SINE Alu 5 311 -1 370 176 11 11 chr4 33001433 33001524 -151287138 + GA-rich Low_complexity Low_complexity 2 92 0 267 308 149 0 chr4 33002700 33002807 -151285855 + MIR SINE MIR 20 142 -66 450 53 0 0 chr4 33002961 33003018 -151285644 + (TG)n Simple_repeat Simple_repeat 2 58 0 2237 91 0 28 chr4 33004256 33004576 -151284086 + AluY SINE Alu 1 311 0 202 216 20 0 chr4 33004825 33004876 -151283786 + (CAAG)n Simple_repeat Simple_repeat 1 52 0 1822 116 36 11 chr4 33006066 33006343 -151282319 + AluSx SINE Alu 1 284 -28 228 67 0 0 chr4 33006343 33006373 -151282289 + (CA)n Simple_repeat Simple_repeat 2 31 0 22 80 0 0 chr4 33007549 33007599 -151281063 + AT_rich Low_complexity Low_complexity 1 50 0 2234 93 0 3 chr4 33007738 33008040 -151280622 - AluY SINE Alu -10 301 1 33 0 0 0 chr4 33008153 33008186 -151280476 + AT_rich Low_complexity Low_complexity 1 33 0 564 308 98 44 chr4 33010327 33010983 -151277679 - L2 LINE L2 0 3313 2529 452 294 62 23 chr4 33012266 33012443 -151276219 - MIR SINE MIR -75 187 4 455 333 69 17 chr4 33015792 33016023 -151272639 + MIR SINE MIR 20 262 0 1118 401 39 40 chr4 33016417 33016961 -151271701 + MLT2B3 LTR ERVL 1 543 -11 2375 151 55 5 chr4 33017538 33017942 -151270720 + MER61C LTR ERV1 1 424 -10 1520 219 121 88 chr4 33018447 33019149 -151269513 - MER50 LTR ERV1 0 734 10 2184 110 0 7 chr4 33019401 33019702 -151268960 + AluSx SINE Alu 3 301 -11 23 0 0 0 chr4 33020388 33020411 -151268251 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr4 33022907 33022944 -151265718 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr4 33025090 33025112 -151263550 + AT_rich Low_complexity Low_complexity 1 22 0 201 121 0 0 chr4 33025656 33025689 -151262973 + (T)n Simple_repeat Simple_repeat 1 33 0 893 127 12 12 chr4 33025701 33025874 -151262788 + CT-rich Low_complexity Low_complexity 2 174 0 303 318 72 23 chr4 33027277 33027977 -151260685 + L1MC/D LINE L1 4738 5481 -748 28 0 0 0 chr4 33028410 33028438 -151260224 + AT_rich Low_complexity Low_complexity 1 28 0 229 219 14 55 chr4 33028547 33028620 -151260042 + GA-rich Low_complexity Low_complexity 2 71 0 1598 267 125 29 chr4 33028999 33029996 -151258666 + L1ME1 LINE L1 37 1220 -5176 2176 247 47 24 chr4 33029998 33030816 -151257846 - L1M4 LINE L1 -2159 3987 3152 2058 247 55 67 chr4 33030820 33031175 -151257487 + L1ME1 LINE L1 5189 5547 -856 2493 62 0 0 chr4 33031175 33031484 -151257178 + AluY SINE Alu 1 309 -2 2058 247 55 67 chr4 33031484 33032123 -151256539 + L1ME1 LINE L1 5547 6320 -83 843 197 86 105 chr4 33032123 33032474 -151256188 - MER2 DNA MER2_type 0 344 1 2058 247 55 67 chr4 33032474 33032557 -151256105 + L1ME1 LINE L1 6320 6403 0 1061 123 12 6 chr4 33032756 33032919 -151255743 + AluJb SINE Alu 136 299 -13 1027 189 55 10 chr4 33033073 33033274 -151255388 + MER1B DNA MER1_type 1 210 -87 404 208 0 14 chr4 33033264 33033336 -151255326 + MER1B DNA MER1_type 259 329 0 * 24 0 0 0 chr4 33033510 33033534 -151255128 + AT_rich Low_complexity Low_complexity 1 24 0 242 315 56 0 chr4 33034421 33034510 -151254152 - MIR SINE MIR -68 140 47 1371 199 119 51 chr4 33034559 33034930 -151253732 + MSTD LTR MaLR 1 396 0 668 111 37 0 chr4 33035256 33035364 -151253298 + MER7A DNA MER2_type 59 168 -178 228 111 0 0 chr4 33035678 33035714 -151252948 + (TG)n Simple_repeat Simple_repeat 2 37 0 553 239 33 49 chr4 33035947 33036131 -151252531 + LTR33 LTR ERVL 341 521 0 180 77 0 0 chr4 33036174 33036200 -151252462 + (TA)n Simple_repeat Simple_repeat 1 26 0 195 42 0 0 chr4 33037700 33037724 -151250938 + (A)n Simple_repeat Simple_repeat 1 24 0 1607 239 136 34 chr4 33037949 33038502 -151250160 + MLT1E2 LTR MaLR 18 626 0 192 182 0 0 chr4 33038563 33038607 -151250055 + T-rich Low_complexity Low_complexity 3 46 0 2247 106 0 0 chr4 33038746 33039057 -151249605 - AluY SINE Alu 0 311 1 1920 194 43 61 chr4 33039404 33039910 -151248752 - MLT1D LTR MaLR -8 497 1 348 322 114 14 chr4 33039916 33040139 -151248523 + MIR SINE MIR 20 262 0 21 0 0 0 chr4 33040369 33040390 -151248272 + AT_rich Low_complexity Low_complexity 1 21 0 1802 209 91 9 chr4 33040458 33040888 -151247774 - MLT1C LTR MaLR 0 467 3 8384 208 24 66 chr4 33041094 33041774 -151246888 + L1P3 LINE L1 623 1330 -5131 180 97 0 0 chr4 33041774 33041805 -151246857 + (CAA)n Simple_repeat Simple_repeat 2 32 0 8384 208 24 66 chr4 33041805 33043667 -151244995 + L1P3 LINE L1 1330 3072 -3389 478 82 10 41 chr4 33043768 33043866 -151244796 + (TCC)n Simple_repeat Simple_repeat 3 97 0 574 260 28 77 chr4 33043869 33043998 -151244664 + LTR38B LTR ERV1 42 176 -414 1998 110 0 71 chr4 33043998 33044133 -151244529 + AluY SINE Alu 1 144 -167 2283 78 0 31 chr4 33044133 33044453 -151244209 + AluY SINE Alu 1 310 -1 1998 110 0 71 chr4 33044453 33044643 -151244019 + AluY SINE Alu 144 303 -8 574 260 28 77 chr4 33044643 33044808 -151243854 + LTR38B LTR ERV1 176 348 -242 2488 72 0 0 chr4 33044808 33045113 -151243549 + AluY SINE Alu 5 309 -2 574 260 28 77 chr4 33045113 33045350 -151243312 + LTR38B LTR ERV1 348 590 0 180 0 0 0 chr4 33045464 33045484 -151243178 + (T)n Simple_repeat Simple_repeat 1 20 0 591 92 0 0 chr4 33045828 33045915 -151242747 + (TA)n Simple_repeat Simple_repeat 1 87 0 1223 217 13 107 chr4 33046006 33046398 -151242264 + MLT1A1 LTR MaLR 1 355 -10 1063 299 9 50 chr4 33046495 33046919 -151241743 - MER92B LTR ERV1 -4 632 226 596 264 5 26 chr4 33049577 33049770 -151238892 - MLT1D LTR MaLR -2 503 315 * 787 246 110 92 chr4 33049761 33050054 -151238608 - MLT1E2 LTR MaLR -229 397 94 1674 176 39 59 chr4 33050054 33050492 -151238170 + MSTB1 LTR MaLR 4 432 0 787 246 110 92 chr4 33050492 33050588 -151238074 - MLT1E2 LTR MaLR -532 94 1 2069 185 12 10 chr4 33050664 33051064 -151237598 - MLT2D LTR ERVL -13 401 1 332 288 0 0 chr4 33051121 33051201 -151237461 - MIR SINE MIR -101 161 82 336 381 37 9 chr4 33051542 33051757 -151236905 - LTR16C LTR ERVL 0 491 271 973 225 66 93 chr4 33052176 33052434 -151236228 - MLT1D LTR MaLR -2 503 215 1277 128 74 8 chr4 33052508 33052765 -151235897 - L1MA8 LINE L1 0 6291 6018 21 36 0 0 chr4 33052896 33052924 -151235738 + AT_rich Low_complexity Low_complexity 1 28 0 1450 241 67 75 chr4 33053221 33053765 -151234897 + MER77 LTR ERV1 89 602 -3 229 240 64 123 chr4 33054131 33054335 -151234327 + MLT1H LTR MaLR 229 420 -129 23 33 0 0 chr4 33054727 33054757 -151233905 + AT_rich Low_complexity Low_complexity 1 30 0 1606 180 41 51 chr4 33054995 33055389 -151233273 + MLT1B LTR MaLR 1 390 0 38 0 0 0 chr4 33055639 33055677 -151232985 + AT_rich Low_complexity Low_complexity 1 38 0 1124 204 25 51 chr4 33056445 33056720 -151231942 - MSTD LTR MaLR 0 396 129 615 95 0 38 chr4 33056720 33056825 -151231837 - L1MA2 LINE L1 -157 6147 6047 308 196 0 0 chr4 33056825 33056881 -151231781 - MSTD LTR MaLR -372 56 1 26 64 0 0 chr4 33057774 33057821 -151230841 + AT_rich Low_complexity Low_complexity 1 47 0 352 354 6 0 chr4 33058499 33058660 -151230002 - L1ME LINE L1 -524 5646 5485 4930 72 1 3 chr4 33058697 33059348 -151229314 + L1PA8 LINE L1 5523 6172 0 412 161 11 21 chr4 33059377 33059470 -151229192 - L1MA4A LINE L1 -5 6298 6207 12252 118 14 4 chr4 33060294 33062222 -151226440 - L1P LINE L1 -1453 4693 2747 2414 125 31 19 chr4 33062222 33062270 -151226392 + L1PB1 LINE L1 5732 5778 -373 396 79 13 26 chr4 33062270 33062346 -151226316 + (TA)n Simple_repeat Simple_repeat 1 75 0 2414 125 31 19 chr4 33062346 33062709 -151225953 + L1PB1 LINE L1 5778 6151 0 28 0 0 0 chr4 33063405 33063433 -151225229 + AT_rich Low_complexity Low_complexity 1 28 0 226 337 0 0 chr4 33064189 33064278 -151224384 - L1MC4 LINE L1 -1341 6701 6613 203 152 22 0 chr4 33064286 33064332 -151224330 + (TA)n Simple_repeat Simple_repeat 2 48 0 255 173 0 0 chr4 33064389 33064441 -151224221 + (TA)n Simple_repeat Simple_repeat 1 52 0 208 139 0 0 chr4 33066066 33066102 -151222560 + (CAAA)n Simple_repeat Simple_repeat 4 39 0 2514 143 61 15 chr4 33066273 33066848 -151221814 + MER4E LTR ERV1 1 766 0 839 172 0 0 chr4 33067080 33067225 -151221437 + L1PB1 LINE L1 1 145 -6718 13203 208 73 25 chr4 33067371 33068541 -151220121 + L1PB1 LINE L1 636 1749 -5118 313 83 42 0 chr4 33068541 33068589 -151220073 + LTR2B LTR ERV1 441 490 0 13203 208 73 25 chr4 33068589 33070342 -151218320 + L1PB1 LINE L1 1749 3417 -3450 261 0 0 0 chr4 33070342 33070371 -151218291 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 13203 208 73 25 chr4 33070371 33070384 -151218278 + L1PB1 LINE L1 3417 3428 -3439 198 0 0 0 chr4 33070384 33070406 -151218256 + (TTAAA)n Simple_repeat Simple_repeat 4 25 0 13203 208 73 25 chr4 33070406 33072850 -151215812 + L1PB1 LINE L1 3428 6350 -517 1958 186 87 24 chr4 33072850 33073301 -151215361 + LTR2B LTR ERV1 1 479 -11 3440 111 4 22 chr4 33073301 33073477 -151215185 + L1PB1 LINE L1 6337 6515 -352 282 56 0 0 chr4 33073477 33073513 -151215149 + (CA)n Simple_repeat Simple_repeat 2 37 0 2358 124 31 3 chr4 33073513 33073867 -151214795 + THE1B LTR MaLR 1 364 0 3440 111 4 22 chr4 33073867 33074230 -151214432 + L1PB1 LINE L1 6513 6867 0 297 313 0 0 chr4 33076080 33076163 -151212499 - L2 LINE L2 -4 3309 3227 1771 141 176 3 chr4 33077334 33077697 -151210965 - MSTA LTR MaLR 0 428 3 31 26 0 0 chr4 33077849 33077887 -151210775 + AT_rich Low_complexity Low_complexity 1 38 0 255 312 43 11 chr4 33078201 33078294 -151210368 - L2 LINE L2 -522 2792 2697 3062 193 35 80 chr4 33078324 33079133 -151209529 + L1MC1 LINE L1 45 816 -5610 5345 221 20 20 chr4 33079137 33081109 -151207553 + L1MC1 LINE L1 3986 6087 -526 1961 140 7 0 chr4 33081109 33081417 -151207245 + AluSx SINE Alu 1 310 -2 5345 221 20 20 chr4 33081417 33081905 -151206757 + L1MC1 LINE L1 6087 6574 -39 189 0 0 0 chr4 33081928 33081949 -151206713 + (CA)n Simple_repeat Simple_repeat 1 21 0 490 204 31 31 chr4 33082652 33082814 -151205848 - L1MA7 LINE L1 -17 6274 6113 250 299 28 47 chr4 33083171 33083278 -151205384 - L2 LINE L2 -14 3299 3195 970 164 12 0 chr4 33083581 33083746 -151204916 + L1P LINE L1 3965 4131 -2015 527 117 126 0 chr4 33083754 33083857 -151204805 + L1P LINE L1 5254 5369 -799 * 929 182 0 0 chr4 33083852 33084033 -151204629 - L1P LINE L1 -1598 4548 4368 5564 182 5 9 chr4 33084037 33085151 -151203511 - L1P LINE L1 -897 5249 4140 1260 282 28 25 chr4 33085148 33085676 -151202986 - L1MCa LINE L1 -2443 3983 3454 * 1172 224 104 31 chr4 33085690 33086105 -151202557 - L1MCa LINE L1 -4517 1909 1465 * 1296 129 0 0 chr4 33086094 33086288 -151202374 - L1P LINE L1 -2397 3749 3556 5763 119 13 7 chr4 33086288 33087883 -151200779 + L1PA10 LINE L1 4561 6163 -5 1729 51 0 5 chr4 33087908 33088119 -151200543 + L1PA3 LINE L1 5921 6151 0 204 59 0 29 chr4 33088119 33088153 -151200509 + (TAAAA)n Simple_repeat Simple_repeat 1 140 0 25 51 0 0 chr4 33088256 33088295 -151200367 + AT_rich Low_complexity Low_complexity 1 39 0 351 0 0 0 chr4 33088489 33088528 -151200134 + (TG)n Simple_repeat Simple_repeat 1 39 0 21 57 0 0 chr4 33088717 33088752 -151199910 + AT_rich Low_complexity Low_complexity 1 35 0 2905 103 2 2 chr4 33088752 33089168 -151199494 + L1P4 LINE L1 5352 5767 -407 1960 185 40 32 chr4 33089168 33089714 -151198948 - MLT2A2 LTR ERVL 0 554 1 230 260 0 0 chr4 33089716 33089766 -151198896 + LTR30 LTR ERV1 2 51 -671 1497 104 105 52 chr4 33089767 33090116 -151198546 + LTR12 LTR ERV1 57 277 -437 288 252 58 0 chr4 33090116 33090219 -151198443 + LTR30 LTR ERV1 544 652 -70 688 120 56 78 chr4 33090220 33090362 -151198300 + pTR5 LTR ERV1 306 444 -1994 * 33802 103 19 12 chr4 33090341 33095220 -151193442 + HERV9 LTR ERV1 59 4974 -3425 1929 116 39 9 chr4 33095238 33095574 -151193088 + HERV17 LTR ERV1 704 1049 -7577 1808 85 19 18 chr4 33095561 33095963 -151192699 + HERV17 LTR ERV1 1275 1720 -5176 * 4543 112 2 2 chr4 33095958 33096601 -151192061 + HERV17 LTR ERV1 7757 8399 0 253 231 0 0 chr4 33096601 33096653 -151192009 + LTR30 LTR ERV1 1 52 -670 1543 115 112 49 chr4 33096653 33097002 -151191660 + LTR12 LTR ERV1 57 2021 -417 286 206 37 56 chr4 33097002 33097110 -151191552 + LTR30 LTR ERV1 375 475 -94 547 135 0 0 chr4 33097110 33097184 -151191478 + LTR12 LTR ERV1 622 695 -19 1247 102 33 0 chr4 33097184 33097387 -151191275 + L1PA13 LINE L1 5732 5953 -178 1148 83 24 0 chr4 33097487 33097655 -151191007 + L1PA13 LINE L1 5992 6163 0 24 32 0 0 chr4 33098045 33098076 -151190586 + AT_rich Low_complexity Low_complexity 1 31 0 35 83 0 0 chr4 33098999 33099083 -151189579 + AT_rich Low_complexity Low_complexity 1 84 0 498 256 0 0 chr4 33099399 33099639 -151189023 + (TG)n Simple_repeat Simple_repeat 1 240 0 422 258 219 19 chr4 33099736 33099891 -151188771 + MER5A DNA MER1_type 4 189 0 281 299 160 14 chr4 33100905 33101049 -151187613 - MIR SINE MIR -32 230 66 1183 197 17 133 chr4 33102173 33102585 -151186077 - MLT1A1 LTR MaLR -1 364 1 453 247 0 0 chr4 33102685 33102766 -151185896 + Tigger3(Golem) DNA MER2_type 2 82 -2947 28 0 0 0 chr4 33102828 33102856 -151185806 + AT_rich Low_complexity Low_complexity 1 28 0 1443 216 3 7 chr4 33102860 33103142 -151185520 - AluJo SINE Alu -31 281 1 1567 170 21 7 chr4 33103142 33103425 -151185237 + Tigger3(Golem) DNA MER2_type 2741 3027 -2 214 315 0 14 chr4 33103538 33103611 -151185051 - MIR SINE MIR -42 220 149 1267 223 95 5 chr4 33103716 33104114 -151184548 - MER69 DNA AcHobo 0 2526 2093 1658 199 40 16 chr4 33104114 33104485 -151184177 - MLT1B LTR MaLR 0 390 11 247 223 75 21 chr4 33104491 33104585 -151184077 - MER69 DNA AcHobo -429 2097 1999 439 276 21 7 chr4 33104591 33104736 -151183926 - MER69 DNA AcHobo -1746 780 634 359 263 91 29 chr4 33105076 33105251 -151183411 + L1MC/D LINE L1 36 221 -6175 1136 263 67 14 chr4 33105366 33105875 -151182787 + L1MC/D LINE L1 646 1181 -5215 436 278 12 12 chr4 33105983 33106156 -151182506 + L1M4 LINE L1 4535 4707 -1439 * 3078 251 53 10 chr4 33106123 33107142 -151181520 + L1MC/D LINE L1 3488 4550 -1665 3740 144 31 0 chr4 33108117 33108723 -151179939 - MER39B LTR ERV1 -28 625 1 489 287 35 11 chr4 33109627 33109801 -151178861 + L1MC4a LINE L1 6725 6902 -906 192 182 0 0 chr4 33109876 33109920 -151178742 + (TG)n Simple_repeat Simple_repeat 1 44 0 229 300 40 0 chr4 33109931 33110031 -151178631 + L1MC4 LINE L1 7216 7319 -723 358 262 124 0 chr4 33110268 33110413 -151178249 + L1MC4 LINE L1 7807 7969 -73 611 324 115 28 chr4 33110649 33110984 -151177678 + L1MC/D LINE L1 5337 5732 -2145 351 44 0 0 chr4 33110984 33111029 -151177633 + (CA)n Simple_repeat Simple_repeat 2 46 0 611 324 115 28 chr4 33111029 33111199 -151177463 + L1MC/D LINE L1 5732 5886 -1991 212 176 0 20 chr4 33112810 33112861 -151175801 + (CAAAT)n Simple_repeat Simple_repeat 5 54 0 1071 175 34 37 chr4 33112862 33113141 -151175521 - MLT1D LTR MaLR -151 354 40 194 344 75 33 chr4 33113243 33113455 -151175207 + L2 LINE L2 1737 1957 -1357 * 293 315 95 68 chr4 33113423 33113833 -151174829 + L2 LINE L2 2884 3304 -9 246 278 16 48 chr4 33114058 33114184 -151174478 + (CATATA)n Simple_repeat Simple_repeat 5 126 0 3443 209 57 103 chr4 33114914 33115627 -151173035 + Charlie1a DNA MER1_type 5 612 -2149 1988 116 48 17 chr4 33115627 33115920 -151172742 + AluSq SINE Alu 1 302 -11 3443 209 57 103 chr4 33115920 33116727 -151171935 + Charlie1a DNA MER1_type 612 1455 0 210 37 0 0 chr4 33116859 33116886 -151171776 + (CA)n Simple_repeat Simple_repeat 2 28 0 1822 219 71 7 chr4 33118183 33118622 -151170040 + MLT1C LTR MaLR 1 467 0 24 32 0 0 chr4 33119376 33119407 -151169255 + AT_rich Low_complexity Low_complexity 1 31 0 281 341 104 0 chr4 33119803 33119976 -151168686 - MIR SINE MIR -6 256 66 33 43 0 0 chr4 33120177 33120224 -151168438 + AT_rich Low_complexity Low_complexity 1 47 0 22 35 0 0 chr4 33120285 33120314 -151168348 + AT_rich Low_complexity Low_complexity 1 29 0 1752 133 91 26 chr4 33121767 33122119 -151166543 + THE1C LTR MaLR 1 375 0 228 372 8 33 chr4 33122318 33122439 -151166223 + MER5A DNA MER1_type 44 161 -28 2553 55 0 0 chr4 33122879 33123187 -151165475 + AluY SINE Alu 1 308 -3 26 30 0 0 chr4 33123450 33123483 -151165179 + AT_rich Low_complexity Low_complexity 1 33 0 186 43 0 0 chr4 33123817 33123840 -151164822 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 375 328 64 0 chr4 33124295 33124420 -151164242 + MIR SINE MIR 14 146 -116 1631 168 61 85 chr4 33124420 33124832 -151163830 + MLT2C2 LTR ERVL 1 402 -62 330 289 96 13 chr4 33124832 33124988 -151163674 + MIR SINE MIR 94 262 0 245 311 54 0 chr4 33124984 33125058 -151163604 + L2 LINE L2 3227 3304 -9 * 202 275 121 33 chr4 33125297 33125388 -151163274 + MIR SINE MIR 84 182 -80 257 337 12 10 chr4 33127270 33127391 -151161271 + MIR SINE MIR 37 157 -69 309 51 0 0 chr4 33127624 33127663 -151160999 + (TG)n Simple_repeat Simple_repeat 2 40 0 36 23 0 0 chr4 33127796 33127839 -151160823 + AT_rich Low_complexity Low_complexity 1 43 0 290 421 8 21 chr4 33127928 33128168 -151160494 - L2 LINE L2 -654 2660 2424 233 240 136 16 chr4 33128184 33128309 -151160353 + L1MC3 LINE L1 6504 6643 -1142 182 345 12 0 chr4 33128311 33128395 -151160267 - L2 LINE L2 -1039 2275 2191 1210 223 41 34 chr4 33128769 33129094 -151159568 + LTR10C LTR ERV1 243 576 -57 255 281 22 45 chr4 33129242 33129331 -151159331 - L2 LINE L2 0 3313 3227 401 225 36 65 chr4 33129504 33129642 -151159020 + MLT1I LTR MaLR 1 134 -275 319 302 155 8 chr4 33129686 33129815 -151158847 + MLT1I LTR MaLR 223 370 -39 482 207 17 35 chr4 33130815 33130931 -151157731 + MER20 DNA MER1_type 1 114 -105 420 291 15 58 chr4 33131294 33131500 -151157162 - L2 LINE L2 -8 3305 3109 785 282 21 116 chr4 33131786 33132399 -151156263 - L2 LINE L2 -410 2904 2350 21 36 0 0 chr4 33132950 33132978 -151155684 + AT_rich Low_complexity Low_complexity 1 28 0 1686 238 3 8 chr4 33134210 33134567 -151154095 - MLT1A1 LTR MaLR -1 364 10 4725 158 14 54 chr4 33134940 33135248 -151153414 + MER49 LTR ERV1 5 324 -599 2256 109 0 3 chr4 33135248 33135551 -151153111 + AluSq SINE Alu 3 304 -9 4725 158 14 54 chr4 33135551 33136200 -151152462 + MER49 LTR ERV1 324 923 0 607 216 49 31 chr4 33136363 33136525 -151152137 + MER2 DNA MER2_type 181 345 0 199 266 28 119 chr4 33136655 33136798 -151151864 + L2 LINE L2 2652 2781 -533 25 51 0 0 chr4 33137211 33137250 -151151412 + AT_rich Low_complexity Low_complexity 1 39 0 1378 119 0 50 chr4 33138552 33138812 -151149850 + MER61E LTR ERV1 1 247 -322 733 182 42 0 chr4 33138812 33138955 -151149707 + MER61E LTR ERV1 417 565 -4 323 361 47 33 chr4 33138963 33139237 -151149425 - L2 LINE L2 -574 2740 2463 2427 41 0 0 chr4 33139483 33139776 -151148886 - L1PA3 LINE L1 -3 6152 5860 402 244 71 31 chr4 33140524 33140651 -151148011 - L2 LINE L2 0 3313 3182 2106 140 0 0 chr4 33140676 33140976 -151147686 + AluSx SINE Alu 2 301 -11 191 340 10 50 chr4 33142872 33142972 -151145690 - L2 LINE L2 -43 3229 3134 2109 118 0 3 chr4 33143047 33143351 -151145311 - AluSg SINE Alu -6 304 2 339 321 29 0 chr4 33143828 33143965 -151144697 + GA-rich Low_complexity Low_complexity 5 145 0 736 172 0 15 chr4 33144049 33144183 -151144479 + FLAM_C SINE Alu 2 133 0 48 53 0 0 chr4 33144403 33144479 -151144183 + AT_rich Low_complexity Low_complexity 1 76 0 963 179 0 68 chr4 33144695 33144930 -151143732 - MER20 DNA MER1_type 0 219 1 322 330 89 51 chr4 33146670 33146906 -151141756 - L3 LINE CR1 -363 1214 970 30 0 0 0 chr4 33147026 33147056 -151141606 + AT_rich Low_complexity Low_complexity 1 30 0 458 264 105 68 chr4 33147315 33147668 -151140994 - MLT1K LTR MaLR -17 571 206 898 194 12 0 chr4 33147942 33148112 -151140550 + MSTC LTR MaLR 253 424 -4 450 353 42 6 chr4 33148117 33148284 -151140378 - MER5B DNA MER1_type 0 178 6 962 233 34 0 chr4 33148528 33148734 -151139928 + MLT1A1 LTR MaLR 115 327 -38 214 374 10 0 chr4 33150200 33150299 -151138363 - L2 LINE L2 -559 2755 2656 27 73 0 0 chr4 33150369 33150424 -151138238 + AT_rich Low_complexity Low_complexity 1 55 0 31 26 0 0 chr4 33150521 33150559 -151138103 + AT_rich Low_complexity Low_complexity 1 38 0 1116 96 6 6 chr4 33151199 33151355 -151137307 + AluSg SINE Alu 1 156 -154 1674 202 19 46 chr4 33151478 33151845 -151136817 - MER67D LTR ERV1 -157 357 1 329 277 31 23 chr4 33151884 33152014 -151136648 + L1 LINE L1 3651 3781 -2365 266 259 17 0 chr4 33152134 33152192 -151136470 - MIR SINE MIR -155 107 49 324 0 0 0 chr4 33152387 33152423 -151136239 + (TG)n Simple_repeat Simple_repeat 2 37 0 392 322 59 0 chr4 33152524 33152676 -151135986 + L3 LINE CR1 1261 1421 -156 481 245 54 38 chr4 33153203 33153387 -151135275 - LTR33 LTR ERVL 0 521 335 234 172 207 0 chr4 33153489 33153576 -151135086 - MER53 DNA DNA -82 107 3 472 225 87 11 chr4 33153615 33153833 -151134829 - MER5C DNA MER1_type -37 287 4 258 198 83 42 chr4 33153893 33153989 -151134673 - LTR33 LTR ERVL -306 215 116 248 383 21 28 chr4 33154988 33155129 -151133533 - MER5A DNA MER1_type -1 188 49 2018 107 31 17 chr4 33155488 33155778 -151132884 - AluSg SINE Alu -16 294 1 328 318 81 31 chr4 33156582 33156805 -151131857 + MIR SINE MIR 1 234 -28 3472 210 8 47 chr4 33157451 33158372 -151130290 - L1 LINE L1 -1169 4977 4093 * 4440 193 15 20 chr4 33158369 33159590 -151129072 + L1PB4 LINE L1 4939 6156 0 224 167 21 0 chr4 33160386 33160434 -151128228 + (TAAG)n Simple_repeat Simple_repeat 3 51 0 335 315 161 7 chr4 33160909 33161058 -151127604 - L2 LINE L2 -762 2552 2381 515 327 43 43 chr4 33161121 33161448 -151127214 - L2 LINE L2 -1151 2163 1837 1142 321 97 54 chr4 33161998 33162952 -151125710 + L2 LINE L2 319 1336 -1978 3132 108 18 0 chr4 33162952 33163397 -151125265 - MLT2A2 LTR ERVL 0 453 1 1142 321 97 54 chr4 33163397 33163655 -151125007 + L2 LINE L2 1336 1582 -1732 442 360 222 21 chr4 33164231 33165164 -151123498 + L2 LINE L2 1855 2974 -340 500 344 45 29 chr4 33165233 33165611 -151123051 - L1MEc LINE L1 -5974 422 39 255 152 0 0 chr4 33166138 33166184 -151122478 + (TG)n Simple_repeat Simple_repeat 2 47 0 2064 115 44 0 chr4 33167287 33167583 -151121079 + AluSx SINE Alu 1 309 -3 551 333 76 55 chr4 33169160 33169847 -151118815 - L1 LINE L1 -2961 3185 2485 369 322 148 22 chr4 33169908 33170178 -151118484 - L2 LINE L2 -469 2845 2542 22 0 0 0 chr4 33170768 33170790 -151117872 + AT_rich Low_complexity Low_complexity 1 22 0 259 244 67 104 chr4 33170810 33170974 -151117688 - MIR SINE MIR 0 262 105 537 58 0 0 chr4 33171064 33171133 -151117529 + (TTCC)n Simple_repeat Simple_repeat 2 70 0 566 201 151 25 chr4 33171133 33171292 -151117370 - AluJb SINE Alu -29 283 105 299 155 17 0 chr4 33171381 33171439 -151117223 + AluJb SINE Alu 69 127 -175 333 214 0 2 chr4 33171451 33171515 -151117147 - AluS SINE Alu -250 58 2 21 0 0 0 chr4 33171601 33171622 -151117040 + AT_rich Low_complexity Low_complexity 1 21 0 1037 318 46 51 chr4 33171973 33172664 -151115998 - HERVL LTR ERVL -1042 3954 3335 260 246 15 0 chr4 33172880 33172945 -151115717 - MLT1E2 LTR MaLR -2 624 559 409 135 0 0 chr4 33172951 33173025 -151115637 - L1MA4A LINE L1 -4 6299 6226 321 238 8 127 chr4 33173196 33173322 -151115340 - MLT1D-int LTR MaLR -710 661 551 467 99 0 0 chr4 33173322 33173393 -151115269 - Alu SINE Alu 0 311 241 1824 288 5 14 chr4 33173393 33173719 -151114943 - MLT1D-int LTR MaLR -817 554 234 1172 207 94 22 chr4 33173719 33174038 -151114624 + MER2 DNA MER2_type 3 344 0 1824 288 5 14 chr4 33174038 33174270 -151114392 - MLT1D-int LTR MaLR -1137 234 1 1282 267 50 40 chr4 33174275 33174770 -151113892 - MLT1D LTR MaLR -4 501 2 821 148 5 0 chr4 33174874 33175015 -151113647 + THE1C LTR MaLR 242 375 0 * 1807 197 3 22 chr4 33175015 33175370 -151113292 + MLT1B LTR MaLR 43 390 0 2329 101 0 3 chr4 33175594 33175901 -151112761 + AluSg SINE Alu 1 306 -4 180 0 0 0 chr4 33175902 33175922 -151112740 + (TA)n Simple_repeat Simple_repeat 1 20 0 25 0 0 0 chr4 33177205 33177230 -151111432 + AT_rich Low_complexity Low_complexity 1 25 0 1868 312 82 54 chr4 33178561 33179532 -151109130 - L2 LINE L2 -339 2975 1977 1140 194 237 48 chr4 33179546 33179695 -151108967 + L1MC3 LINE L1 7307 7427 -358 1894 121 4 0 chr4 33179695 33179960 -151108702 + AluSx SINE Alu 1 266 -46 1140 194 237 48 chr4 33179960 33180038 -151108624 + L1MC3 LINE L1 7427 7489 -296 1992 66 52 22 chr4 33180038 33180342 -151108320 + AluY SINE Alu 1 312 0 1140 194 237 48 chr4 33180342 33180509 -151108153 + L1MC3 LINE L1 7489 7778 -7 228 321 54 12 chr4 33180776 33180944 -151107718 - MLT1I LTR MaLR -35 374 200 2309 148 46 19 chr4 33181148 33181560 -151107102 + MSTA LTR MaLR 4 426 -2 337 294 72 7 chr4 33181974 33182127 -151106535 + L1M4c LINE L1 848 1010 -5374 313 271 24 0 chr4 33182145 33182230 -151106432 - L1MEd LINE L1 -5107 1012 926 533 287 54 40 chr4 33182330 33182626 -151106036 + L1ME3A LINE L1 5866 6165 -5 1656 209 3 0 chr4 33182825 33183182 -151105480 - AluJo SINE Alu 0 360 3 397 285 82 37 chr4 33183209 33183745 -151104917 - L1ME LINE L1 -4880 1335 785 458 363 15 15 chr4 33184204 33184477 -151104185 - L1ME LINE L1 -6011 385 113 201 108 0 0 chr4 33184778 33184815 -151103847 + (ATG)n Simple_repeat Simple_repeat 3 39 0 323 333 97 28 chr4 33184847 33184991 -151103671 - MIR SINE MIR -49 213 60 2231 69 0 10 chr4 33185259 33185547 -151103115 + AluY SINE Alu 13 297 -14 23 0 0 0 chr4 33185563 33185586 -151103076 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr4 33186795 33186832 -151101830 + AT_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chr4 33187023 33187058 -151101604 + AT_rich Low_complexity Low_complexity 1 35 0 196 299 104 0 chr4 33187209 33187276 -151101386 + L3 LINE CR1 390 463 -1114 3522 152 67 57 chr4 33187672 33188449 -151100213 - LTR1 LTR ERV1 0 785 1 794 126 5 126 chr4 33189161 33189368 -151099294 + MER53 DNA DNA 8 189 0 406 301 26 20 chr4 33189370 33189523 -151099139 - MIR SINE MIR -47 215 62 423 78 0 0 chr4 33189722 33189786 -151098876 - Alu SINE Alu 0 311 245 1080 45 0 15 chr4 33189790 33189924 -151098738 - AluY SINE Alu -179 132 1 206 345 71 24 chr4 33189964 33190132 -151098530 + L2 LINE L2 2691 2866 -448 2425 212 16 43 chr4 33190340 33190987 -151097675 - L1MA8 LINE L1 -870 5276 4648 4606 159 19 21 chr4 33191001 33191190 -151097472 + L1MA8 LINE L1 5254 5442 -849 1939 149 0 0 chr4 33191190 33191466 -151097196 + AluSx SINE Alu 1 276 -36 306 0 0 0 chr4 33191473 33191507 -151097155 + (CA)n Simple_repeat Simple_repeat 2 35 0 4606 159 19 21 chr4 33191507 33192166 -151096496 + L1MA8 LINE L1 5448 6108 -183 * 14315 92 6 1 chr4 33192164 33194107 -151094555 + L1PA5 LINE L1 55 2008 -4138 7575 89 6 21 chr4 33194109 33195196 -151093466 - MER11C LTR ERVK 0 1071 1 21307 56 0 1 chr4 33195196 33198726 -151089936 + L1PA5 LINE L1 2599 6148 -6 621 136 131 28 chr4 33198726 33198902 -151089760 + L1MA7 LINE L1 6092 6285 -6 27 49 0 0 chr4 33199482 33199523 -151089139 + AT_rich Low_complexity Low_complexity 1 41 0 187 182 0 36 chr4 33199789 33199844 -151088818 + CT-rich Low_complexity Low_complexity 2 54 0 2233 108 0 3 chr4 33199949 33200246 -151088416 - AluSx SINE Alu -16 296 1 32 43 0 0 chr4 33200529 33200575 -151088087 + AT_rich Low_complexity Low_complexity 1 46 0 225 378 18 9 chr4 33200765 33200876 -151087786 - MIR3 SINE MIR -46 162 51 254 260 0 0 chr4 33201085 33201135 -151087527 + MER21B LTR ERV1 47 96 -767 2038 122 0 38 chr4 33201164 33201484 -151087178 - AluSx SINE Alu -4 308 1 917 294 76 35 chr4 33201498 33202077 -151086585 + MER21B LTR ERV1 100 756 -107 1875 152 25 0 chr4 33202115 33202391 -151086271 + AluSx SINE Alu 1 283 -29 285 29 0 0 chr4 33202391 33202425 -151086237 + (CA)n Simple_repeat Simple_repeat 2 35 0 445 250 18 36 chr4 33202502 33202670 -151085992 + (TA)n Simple_repeat Simple_repeat 2 166 0 419 200 0 0 chr4 33202704 33202794 -151085868 + MER53 DNA DNA 100 189 0 262 343 65 57 chr4 33203557 33203656 -151085006 - MIR SINE MIR -7 255 158 1429 195 29 49 chr4 33203656 33204000 -151084662 - MER1B DNA MER1_type 0 337 1 262 343 65 57 chr4 33204000 33204148 -151084514 - MIR SINE MIR -104 158 6 26 50 0 0 chr4 33204478 33204518 -151084144 + AT_rich Low_complexity Low_complexity 1 40 0 256 236 34 45 chr4 33204764 33204853 -151083809 - MIR SINE MIR 0 262 175 569 279 20 0 chr4 33205702 33205849 -151082813 + MER4A-int LTR ERV1 1951 2100 -4231 610 229 45 76 chr4 33205863 33206285 -151082377 + MER4A-int LTR ERV1 1356 3129 -263 2088 169 84 22 chr4 33206638 33206822 -151081840 - MSTA LTR MaLR 0 428 257 2524 111 3 31 chr4 33206822 33207043 -151081619 - THE1C LTR MaLR 0 375 168 2202 113 3 0 chr4 33207043 33207336 -151081326 + AluSg SINE Alu 1 294 -16 2524 111 3 31 chr4 33207336 33207500 -151081162 - THE1C LTR MaLR -207 168 1 2088 169 84 22 chr4 33207500 33207718 -151080944 - MSTA LTR MaLR -171 257 1 1366 209 77 93 chr4 33207722 33208773 -151079889 + MER4A-int LTR ERV1 2099 3620 -1395 2337 212 42 14 chr4 33208783 33209246 -151079416 + L1 LINE L1 4682 5130 -1036 1890 112 11 0 chr4 33209246 33209515 -151079147 + AluY SINE Alu 37 308 -3 2337 212 42 14 chr4 33209515 33209766 -151078896 + L1 LINE L1 5130 5419 -747 4066 143 26 0 chr4 33209766 33210429 -151078233 + L1PA16 LINE L1 5487 6166 0 310 255 11 0 chr4 33210436 33210530 -151078132 + (TA)n Simple_repeat Simple_repeat 1 95 0 7542 165 22 1 chr4 33210624 33211951 -151076711 - Tigger1 DNA MER2_type -4 2414 1060 4978 193 28 16 chr4 33211954 33213981 -151074681 - L1MA4A LINE L1 0 7365 5316 5755 226 28 48 chr4 33214082 33215940 -151072722 - L1MA4A LINE L1 -2214 4994 3176 369 0 0 0 chr4 33215971 33216012 -151072650 + (TC)n Simple_repeat Simple_repeat 2 42 0 * 372 103 0 0 chr4 33216011 33216069 -151072593 + (TA)n Simple_repeat Simple_repeat 1 58 0 4725 207 35 176 chr4 33216069 33218442 -151070220 - L1MA4A LINE L1 -4809 2400 1 552 104 198 0 chr4 33218448 33218554 -151070108 - Tigger1 DNA MER2_type -1344 1074 948 * 4378 165 34 8 chr4 33218548 33219316 -151069346 - Tigger1 DNA MER2_type -1630 788 1 5595 219 48 43 chr4 33219319 33221052 -151067610 + MER4A-int LTR ERV1 4589 6330 -1 1880 113 9 48 chr4 33221141 33221476 -151067186 + MER4A LTR ERV1 37 358 -306 2145 126 3 3 chr4 33221513 33221823 -151066839 + MER4A LTR ERV1 355 664 0 546 168 0 37 chr4 33221827 33221934 -151066728 + LTR49 LTR ERV1 39 141 -454 452 143 26 13 chr4 33221957 33222030 -151066632 + MER84 LTR ERVI 1 74 -433 1773 146 71 7 chr4 33222030 33222339 -151066323 + MER84 LTR ERVI 2 330 -177 187 151 0 57 chr4 33223921 33223974 -151064688 + GA-rich Low_complexity Low_complexity 5 54 0 180 0 0 0 chr4 33224211 33224231 -151064431 + (TAA)n Simple_repeat Simple_repeat 1 20 0 1060 224 35 52 chr4 33224717 33225061 -151063601 + MER58B DNA MER1_type 1 338 -3 309 381 12 6 chr4 33225098 33225266 -151063396 + L2 LINE L2 2619 2787 -527 480 35 0 0 chr4 33225394 33225452 -151063210 + (A)n Simple_repeat Simple_repeat 1 58 0 180 0 0 0 chr4 33225868 33225888 -151062774 + (TAA)n Simple_repeat Simple_repeat 1 20 0 1060 224 35 52 chr4 33226374 33226718 -151061944 + MER58B DNA MER1_type 1 338 -3 309 381 12 6 chr4 33226755 33226923 -151061739 + L2 LINE L2 2619 2787 -527 318 106 0 0 chr4 33227051 33227098 -151061564 + (A)n Simple_repeat Simple_repeat 1 47 0 216 331 153 25 chr4 33227431 33227588 -151061074 - L2 LINE L2 -189 3083 2907 452 215 90 123 chr4 33227603 33227839 -151060823 - LTR48 LTR ERV1 -30 757 515 1825 143 42 68 chr4 33227839 33228224 -151060438 - THE1C LTR MaLR 0 375 1 452 215 90 123 chr4 33228224 33228415 -151060247 - LTR48 LTR ERV1 -272 515 157 766 167 71 54 chr4 33228423 33228591 -151060071 - MER84 LTR ERVI -9 498 328 296 95 0 0 chr4 33228608 33228650 -151060012 + MADE1 DNA Mariner 1 42 -38 271 358 142 4 chr4 33229013 33229273 -151059389 + L2 LINE L2 2420 2715 -599 1357 67 0 0 chr4 33229280 33229460 -151059202 + L1PA13 LINE L1 5984 6163 0 198 292 0 15 chr4 33229940 33230005 -151058657 + L2 LINE L2 3248 3311 -2 267 243 0 72 chr4 33231642 33231753 -151056909 + HAL1 LINE L1 95 197 -2310 460 336 141 46 chr4 33231883 33232315 -151056347 + HAL1 LINE L1 446 918 -1589 277 258 90 69 chr4 33232362 33232503 -151056159 + HAL1 LINE L1 897 1034 -1473 1785 160 0 55 chr4 33232503 33232806 -151055856 + AluSx SINE Alu 1 286 -26 390 21 0 0 chr4 33232806 33232853 -151055809 + (CATA)n Simple_repeat Simple_repeat 2 48 0 1785 160 0 55 chr4 33232853 33232874 -151055788 + AluSx SINE Alu 286 307 -5 277 258 90 69 chr4 33232874 33233212 -151055450 + HAL1 LINE L1 1034 1386 -1121 416 320 56 32 chr4 33233365 33233615 -151055047 + HAL1 LINE L1 1627 1882 -625 2548 171 18 134 chr4 33233675 33234326 -151054336 - MER70B LTR ERVL -2 576 1 546 298 0 7 chr4 33234427 33234568 -151054094 - MIR SINE MIR -105 157 18 257 279 81 35 chr4 33234565 33234717 -151053945 + MIR SINE MIR 5 161 -68 * 330 331 100 25 chr4 33237631 33237791 -151050871 + MIR SINE MIR 2 173 -89 237 316 86 0 chr4 33237912 33238029 -151050633 - MIR SINE MIR -79 183 57 2265 128 0 0 chr4 33238416 33238729 -151049933 - AluSq SINE Alu 0 313 1 30 45 0 0 chr4 33239197 33239241 -151049421 + AT_rich Low_complexity Low_complexity 1 44 0 191 36 36 0 chr4 33239798 33239826 -151048836 + (CA)n Simple_repeat Simple_repeat 2 30 0 473 111 0 0 chr4 33240107 33240179 -151048483 + AluS SINE Alu 1 72 -239 1962 114 72 7 chr4 33240179 33240486 -151048176 - L1PA11 LINE L1 -101 6073 5747 249 181 0 133 chr4 33240456 33240539 -151048123 - L1P LINE L1 -2887 3259 3188 * 5681 120 15 2 chr4 33240560 33241435 -151047227 - L1PB1 LINE L1 -1 6150 5265 * 8517 184 31 26 chr4 33241418 33242766 -151045896 - L1P LINE L1 -2950 3196 1835 1884 154 4 0 chr4 33242766 33243075 -151045587 + AluSx SINE Alu 1 310 0 8517 184 31 26 chr4 33243075 33243623 -151045039 - L1P LINE L1 -4311 1835 1291 1547 288 91 90 chr4 33243709 33244723 -151043939 + L2 LINE L2 2013 3004 -268 864 287 184 29 chr4 33244788 33245234 -151043428 + LTR41 LTR ERVL 29 543 -230 26 0 0 0 chr4 33245334 33245360 -151043302 + AT_rich Low_complexity Low_complexity 1 26 0 24 67 0 0 chr4 33245648 33245693 -151042969 + AT_rich Low_complexity Low_complexity 1 45 0 189 0 0 0 chr4 33245869 33245890 -151042772 + (T)n Simple_repeat Simple_repeat 1 21 0 1746 217 8 2 chr4 33246801 33247218 -151041444 + MLT2B1 LTR ERVL 1 470 -50 328 64 0 0 chr4 33247218 33247265 -151041397 + MADE1 DNA Mariner 1 47 -33 331 161 0 0 chr4 33247301 33247357 -151041305 + MLT2B1 LTR ERVL 460 515 0 235 100 0 0 chr4 33247873 33247913 -151040749 + L1MA3 LINE L1 6266 6305 0 23 0 0 0 chr4 33247914 33247937 -151040725 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr4 33248061 33248082 -151040580 + AT_rich Low_complexity Low_complexity 1 21 0 223 415 67 12 chr4 33249092 33249256 -151039406 - MIR SINE MIR -70 192 20 338 295 45 27 chr4 33249636 33249748 -151038914 - MIR SINE MIR -60 148 35 253 408 44 64 chr4 33250759 33251166 -151037496 - L2 LINE L2 -7 3265 2867 729 245 42 0 chr4 33251315 33251527 -151037135 - MER33 DNA MER1_type -102 222 2 53 90 0 0 chr4 33251668 33251812 -151036850 + AT_rich Low_complexity Low_complexity 1 144 0 4373 185 32 56 chr4 33252126 33253603 -151035059 + L1MA9 LINE L1 4280 5694 -618 1772 98 0 23 chr4 33253603 33253868 -151034794 + AluY SINE Alu 19 277 -34 4373 185 32 56 chr4 33253868 33254473 -151034189 + L1MA9 LINE L1 5694 6312 0 267 225 0 0 chr4 33254520 33254591 -151034071 + (TA)n Simple_repeat Simple_repeat 1 71 0 2181 97 0 17 chr4 33254591 33254891 -151033771 - AluSx SINE Alu -17 295 1 25 51 0 0 chr4 33254892 33254931 -151033731 + AT_rich Low_complexity Low_complexity 1 39 0 850 178 17 56 chr4 33255569 33255749 -151032913 - FRAM SINE Alu -4 172 1 202 368 16 40 chr4 33255754 33255879 -151032783 - MIR SINE MIR -121 141 20 21 0 0 0 chr4 33255930 33255951 -151032711 + AT_rich Low_complexity Low_complexity 1 21 0 206 244 44 33 chr4 33255990 33256080 -151032582 - L2 LINE L2 -790 2524 2434 229 343 56 85 chr4 33256615 33256956 -151031706 + MLT1L LTR MaLR 24 354 -195 189 107 0 0 chr4 33257201 33257229 -151031433 + (GA)n Simple_repeat Simple_repeat 2 29 0 447 19 0 0 chr4 33257233 33257285 -151031377 + (TG)n Simple_repeat Simple_repeat 1 52 0 592 345 110 19 chr4 33258214 33258769 -151029893 - L2 LINE L2 -34 3279 2671 2110 149 13 13 chr4 33258771 33259146 -151029516 + THE1C LTR MaLR 1 375 0 8249 137 16 36 chr4 33259146 33260523 -151028139 + THE1C-int LTR MaLR 1 1349 -231 278 65 0 22 chr4 33260667 33260713 -151027949 + (GGGAGA)n Simple_repeat Simple_repeat 6 50 0 400 351 63 19 chr4 33260774 33260979 -151027683 - MIR SINE MIR -2 260 47 205 289 118 67 chr4 33261075 33261210 -151027452 - MIR3 SINE MIR -24 184 43 21 57 0 0 chr4 33262323 33262358 -151026304 + AT_rich Low_complexity Low_complexity 1 35 0 234 81 0 0 chr4 33262833 33262870 -151025792 + (T)n Simple_repeat Simple_repeat 1 37 0 1975 80 8 4 chr4 33262920 33263184 -151025478 + AluSp SINE Alu 39 303 -10 191 315 0 0 chr4 33263212 33263266 -151025396 + L2 LINE L2 3259 3312 -1 716 314 73 16 chr4 33264044 33264485 -151024177 - MLT1G1 LTR MaLR -36 559 75 315 283 89 50 chr4 33264528 33264708 -151023954 + MLT1L LTR MaLR 357 543 -72 819 259 21 43 chr4 33264753 33265035 -151023627 - MER93b LTR ERV1 0 373 98 389 20 0 20 chr4 33265835 33265886 -151022776 + (TTCC)n Simple_repeat Simple_repeat 2 51 0 207 186 0 0 chr4 33265889 33265932 -151022730 + CT-rich Low_complexity Low_complexity 1 43 0 208 111 44 0 chr4 33266671 33266716 -151021946 + CT-rich Low_complexity Low_complexity 1 47 0 256 283 40 10 chr4 33266768 33266867 -151021795 + MIR3 SINE MIR 85 186 -22 355 294 123 0 chr4 33268852 33268998 -151019664 + MIR SINE MIR 20 183 -79 554 253 152 17 chr4 33269309 33269546 -151019116 + MER5C DNA MER1_type 56 324 0 7674 25 0 0 chr4 33269993 33271058 -151017604 + L1PA3 LINE L1 5095 6155 0 1503 292 88 59 chr4 33271497 33272631 -151016031 + L2 LINE L2 2046 3297 -16 28 0 0 0 chr4 33273109 33273137 -151015525 + AT_rich Low_complexity Low_complexity 1 28 0 275 296 163 0 chr4 33273593 33273691 -151014971 - MIR SINE MIR -75 187 74 1780 156 21 12 chr4 33273967 33274306 -151014356 - L1MA3 LINE L1 0 6305 5964 451 243 85 32 chr4 33274353 33274422 -151014240 - L1ME3A LINE L1 -230 5940 5876 2535 67 6 0 chr4 33274422 33274753 -151013909 + L1PA7 LINE L1 5819 6151 -3 451 243 85 32 chr4 33274753 33274930 -151013732 - L1ME3A LINE L1 -294 5876 5681 22 80 0 0 chr4 33276093 33276143 -151012519 + AT_rich Low_complexity Low_complexity 1 50 0 1812 213 178 0 chr4 33276445 33276872 -151011790 + MLT1D LTR MaLR 1 503 -2 277 266 63 38 chr4 33276876 33276955 -151011707 - L2 LINE L2 -33 3280 3200 215 283 222 33 chr4 33276936 33277116 -151011546 - MIR SINE MIR -32 230 17 * 23 68 0 0 chr4 33277318 33277362 -151011300 + AT_rich Low_complexity Low_complexity 1 44 0 2407 59 0 7 chr4 33278085 33278390 -151010272 - AluY SINE Alu -8 303 1 761 130 0 0 chr4 33278423 33278538 -151010124 - L1PB3 LINE L1 0 6154 6040 23 86 0 0 chr4 33278936 33278994 -151009668 + AT_rich Low_complexity Low_complexity 1 58 0 522 81 23 0 chr4 33279300 33279386 -151009276 + L1PB1 LINE L1 6059 6146 -5 986 167 39 56 chr4 33279417 33279538 -151009124 + MSTA LTR MaLR 67 184 -244 1799 175 0 28 chr4 33279538 33279858 -151008804 + AluJb SINE Alu 1 311 -1 986 167 39 56 chr4 33279858 33279969 -151008693 + MSTA LTR MaLR 184 295 -133 1934 126 7 0 chr4 33280494 33280792 -151007870 - AluSx SINE Alu 0 303 4 225 164 55 18 chr4 33281411 33281466 -151007196 - MER82 DNA MER2_type -430 223 167 201 74 0 0 chr4 33281891 33281918 -151006744 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 882 221 10 36 chr4 33283511 33283706 -151004956 - AluJb SINE Alu -20 292 103 206 310 0 0 chr4 33284260 33284318 -151004344 + A-rich Low_complexity Low_complexity 2 59 0 186 246 246 0 chr4 33284591 33284652 -151004010 + L2 LINE L2 1052 1127 -2187 257 339 58 58 chr4 33284789 33285046 -151003616 + L2 LINE L2 1390 1646 -1668 716 109 36 7 chr4 33285046 33285184 -151003478 + CT-rich Low_complexity Low_complexity 4 145 0 1419 182 54 20 chr4 33285186 33285482 -151003180 - AluJo SINE Alu -6 306 1 257 307 9 26 chr4 33285494 33285608 -151003054 + L2 LINE L2 1611 1722 -1592 809 268 31 65 chr4 33285722 33286199 -151002463 + L1MEc LINE L1 1258 1718 -4678 244 289 139 12 chr4 33286222 33286395 -151002267 - L1MEc LINE L1 -5145 1977 1783 242 236 0 14 chr4 33286402 33286474 -151002188 + (TA)n Simple_repeat Simple_repeat 2 72 0 234 297 110 13 chr4 33286497 33286652 -151002010 - L1MEc LINE L1 -4887 1536 1367 582 294 53 60 chr4 33287009 33287444 -151001218 - L1MEc LINE L1 -5972 451 20 21 0 0 0 chr4 33288166 33288187 -151000475 + AT_rich Low_complexity Low_complexity 1 21 0 199 373 25 54 chr4 33290724 33290928 -150997734 + L2 LINE L2 2259 2456 -858 755 239 48 43 chr4 33290929 33291138 -150997524 - MER63A DNA MER1_type 0 210 1 210 128 85 0 chr4 33291399 33291446 -150997216 + (TTATA)n Simple_repeat Simple_repeat 1 51 0 21 0 0 0 chr4 33291790 33291811 -150996851 + AT_rich Low_complexity Low_complexity 1 21 0 458 309 58 39 chr4 33292340 33292547 -150996115 - MIR SINE MIR -41 221 11 202 89 67 0 chr4 33293402 33293447 -150995215 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 207 0 0 0 chr4 33294988 33295011 -150993651 + (CA)n Simple_repeat Simple_repeat 2 24 0 25 51 0 0 chr4 33295592 33295631 -150993031 + AT_rich Low_complexity Low_complexity 1 39 0 4119 199 35 0 chr4 33295714 33296574 -150992088 - L1MC1 LINE L1 0 6333 5444 1472 205 16 70 chr4 33297053 33297439 -150991223 + MLT1A1 LTR MaLR 1 365 0 25 0 0 0 chr4 33297630 33297655 -150991007 + AT_rich Low_complexity Low_complexity 1 25 0 24 53 0 0 chr4 33298015 33298053 -150990609 + AT_rich Low_complexity Low_complexity 1 38 0 242 154 0 31 chr4 33298324 33298389 -150990273 + (AATAG)n Simple_repeat Simple_repeat 4 66 0 704 296 62 101 chr4 33298472 33298673 -150989989 - LTR16A LTR ERVL -4 446 239 1923 160 10 44 chr4 33298673 33299061 -150989601 - THE1C LTR MaLR 0 375 1 704 296 62 101 chr4 33299061 33299295 -150989367 - LTR16A LTR ERVL -211 239 28 527 207 53 147 chr4 33299364 33299794 -150988868 + MLT1B LTR MaLR 1 390 0 24 0 0 0 chr4 33299945 33299969 -150988693 + AT_rich Low_complexity Low_complexity 1 24 0 279 294 12 0 chr4 33300224 33300309 -150988353 + GA-rich Low_complexity Low_complexity 2 87 0 494 312 0 0 chr4 33301773 33301898 -150986764 + L2 LINE L2 3187 3311 -2 2152 107 3 0 chr4 33301942 33302233 -150986429 + AluSp SINE Alu 7 298 -15 224 306 0 0 chr4 33303278 33303350 -150985312 + A-rich Low_complexity Low_complexity 1 72 0 21 0 0 0 chr4 33303574 33303595 -150985067 + AT_rich Low_complexity Low_complexity 1 21 0 247 352 61 36 chr4 33304257 33304453 -150984209 + L2 LINE L2 2921 3121 -192 1514 168 8 19 chr4 33304743 33305005 -150983657 + AluJo SINE Alu 36 294 -18 329 217 26 43 chr4 33305055 33305170 -150983492 - ORSL DNA AcHobo -160 115 3 205 375 55 16 chr4 33306467 33306595 -150982067 + MIR SINE MIR 57 189 -73 2166 99 20 0 chr4 33307100 33307392 -150981270 + AluSq SINE Alu 1 298 -15 460 216 9 35 chr4 33307926 33308042 -150980620 - L2 LINE L2 -18 3295 3183 248 65 0 0 chr4 33308743 33308774 -150979888 - MLT2B1 LTR ERVL -4 410 380 432 0 0 0 chr4 33308776 33308824 -150979838 + (TG)n Simple_repeat Simple_repeat 2 49 0 1327 220 39 65 chr4 33308886 33309299 -150979363 - MLT2B1 LTR ERVL -116 404 3 202 135 27 0 chr4 33309524 33309561 -150979101 + CT-rich Low_complexity Low_complexity 4 41 0 625 65 0 0 chr4 33310214 33310306 -150978356 + Alu SINE Alu 221 312 0 207 343 0 0 chr4 33310364 33310434 -150978228 + L2 LINE L2 3203 3272 0 2143 110 0 0 chr4 33310475 33310765 -150977897 - AluSq SINE Alu -18 295 6 322 353 0 30 chr4 33313015 33313148 -150975514 - MIR SINE MIR -114 148 20 1958 183 17 6 chr4 33313708 33314069 -150974593 + MLT1A1 LTR MaLR 1 365 0 194 322 22 44 chr4 33314223 33314313 -150974349 - L2 LINE L2 -48 3265 3178 705 256 0 0 chr4 33314486 33314642 -150974020 + FRAM SINE Alu 1 156 -10 273 341 209 5 chr4 33314912 33315123 -150973539 + MLT1G1 LTR MaLR 1 254 -341 587 211 91 15 chr4 33315238 33315429 -150973233 + MLT1G1 LTR MaLR 303 595 0 222 105 0 0 chr4 33315552 33315590 -150973072 + (CA)n Simple_repeat Simple_repeat 2 39 0 21 36 0 0 chr4 33315788 33315816 -150972846 + AT_rich Low_complexity Low_complexity 1 28 0 4307 170 22 34 chr4 33315822 33317250 -150971412 - L1MA7 LINE L1 -13 6278 4777 5254 199 38 3 chr4 33318200 33319394 -150969268 - L1MC1 LINE L1 0 6333 5101 439 296 37 46 chr4 33319538 33319754 -150968908 - MIR SINE MIR -1 261 48 24 67 0 0 chr4 33320843 33320888 -150967774 + AT_rich Low_complexity Low_complexity 1 45 0 954 127 34 19 chr4 33320998 33321203 -150967459 - L1MA7 LINE L1 0 6291 6084 25 75 0 0 chr4 33321904 33321957 -150966705 + AT_rich Low_complexity Low_complexity 1 53 0 6612 99 8 5 chr4 33322017 33324959 -150963703 + L1PA8 LINE L1 3177 6172 0 502 171 12 92 chr4 33325062 33325226 -150963436 + L1MA1 LINE L1 6048 6198 -104 27 0 0 0 chr4 33325290 33325317 -150963345 + AT_rich Low_complexity Low_complexity 1 27 0 2008 143 29 35 chr4 33325791 33326168 -150962494 + THE1C LTR MaLR 1 375 0 5256 160 56 7 chr4 33326196 33327089 -150961573 + THE1C-int LTR MaLR 17 953 -627 7335 175 9 39 chr4 33327093 33328493 -150960169 - MSTA-int LTR MaLR -220 1360 3 1460 196 139 18 chr4 33328495 33328877 -150959785 - MSTA LTR MaLR 0 428 1 399 153 14 0 chr4 33328877 33328949 -150959713 + L1PA15 LINE L1 6086 6158 -7 699 251 22 56 chr4 33328963 33329302 -150959360 + L1ME2 LINE L1 5255 5609 -553 1271 192 36 126 chr4 33329302 33329584 -150959078 - MER39 LTR ERV1 0 707 401 2138 115 0 0 chr4 33329584 33329871 -150958791 - AluSq SINE Alu -26 287 1 1271 192 36 126 chr4 33329871 33330159 -150958503 - MER39 LTR ERV1 -306 401 1 1205 279 41 24 chr4 33330163 33330697 -150957965 + L1ME2 LINE L1 5611 6153 -11 633 319 114 44 chr4 33331365 33331776 -150956886 + L2 LINE L2 2874 3313 0 1915 109 138 3 chr4 33331858 33332178 -150956484 - THE1B LTR MaLR 0 364 2 223 378 79 6 chr4 33332348 33332512 -150956150 - MIR SINE MIR -7 255 80 514 295 14 0 chr4 33332541 33332680 -150955982 + MER63A DNA MER1_type 42 182 -28 2793 250 50 37 chr4 33335121 33335907 -150952755 + L1MC3 LINE L1 3919 4119 -2027 2419 135 5 11 chr4 33335907 33336284 -150952378 - THE1C LTR MaLR 0 375 1 2793 250 50 37 chr4 33336284 33337586 -150951076 + L1MC3 LINE L1 4119 5403 -743 3855 211 77 43 chr4 33337589 33338545 -150950117 + L1MC3 LINE L1 6620 7622 -163 1967 131 3 0 chr4 33338545 33338835 -150949827 + AluSq SINE Alu 2 292 -21 3855 211 77 43 chr4 33338835 33339005 -150949657 + L1MC3 LINE L1 7622 7785 0 926 116 11 28 chr4 33339141 33339322 -150949340 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 1709 190 0 7 chr4 33339328 33339628 -150949034 - AluJb SINE Alu -2 310 13 348 299 0 28 chr4 33339687 33339794 -150948868 + GA-rich Low_complexity Low_complexity 1 104 0 21 0 0 0 chr4 33340942 33340963 -150947699 + AT_rich Low_complexity Low_complexity 1 21 0 1942 152 3 3 chr4 33340966 33341275 -150947387 + AluSx SINE Alu 1 309 -3 475 45 0 0 chr4 33341964 33342031 -150946631 - AluY SINE Alu 0 310 244 9722 31 3 161 chr4 33343790 33345328 -150943334 - SVA Other Other 0 1386 91 261 0 0 0 chr4 33345784 33345813 -150942849 + (T)n Simple_repeat Simple_repeat 1 29 0 236 362 29 0 chr4 33347796 33347901 -150940761 + L2 LINE L2 3206 3313 0 1023 233 34 90 chr4 33348007 33348364 -150940298 + MLT1D LTR MaLR 1 337 -168 201 239 82 98 chr4 33348515 33348599 -150940063 + L2 LINE L2 3099 3183 -130 2162 110 0 17 chr4 33348599 33348898 -150939764 - AluSg SINE Alu -16 294 1 201 239 82 98 chr4 33348898 33348997 -150939665 + L2 LINE L2 3183 3279 -34 656 99 2 0 chr4 33348997 33349128 -150939534 + L1PA8 LINE L1 6012 6183 0 239 262 0 10 chr4 33349148 33349251 -150939411 + GA-rich Low_complexity Low_complexity 3 104 0 339 320 33 0 chr4 33349599 33349721 -150938941 - L2 LINE L2 -666 2648 2523 262 259 43 86 chr4 33350260 33350376 -150938286 + L2 LINE L2 3203 3313 0 * 591 290 55 47 chr4 33350374 33350629 -150938033 + MIR SINE MIR 6 262 0 2802 16 0 0 chr4 33351635 33351944 -150936718 + AluY SINE Alu 1 309 -2 214 273 31 31 chr4 33353813 33353941 -150934721 + (CATATA)n Simple_repeat Simple_repeat 1 128 0 23 33 0 0 chr4 33354047 33354077 -150934585 + AT_rich Low_complexity Low_complexity 1 30 0 200 291 107 29 chr4 33354428 33354531 -150934131 - MER5A DNA MER1_type -78 111 1 192 291 89 13 chr4 33354579 33354658 -150934004 + MIR3 SINE MIR 72 156 -52 350 281 103 11 chr4 33354681 33354866 -150933796 - MER112 DNA MER1_type -41 219 18 39 74 0 0 chr4 33355141 33355222 -150933440 + AT_rich Low_complexity Low_complexity 1 81 0 672 258 0 11 chr4 33355579 33355757 -150932905 - MER5B DNA MER1_type -2 176 1 21 36 0 0 chr4 33355847 33355875 -150932787 + AT_rich Low_complexity Low_complexity 1 28 0 2030 324 13 41 chr4 33356078 33356505 -150932157 + L1PA13 LINE L1 1 439 -6348 1603 154 90 39 chr4 33356505 33356862 -150931800 - THE1C LTR MaLR 0 375 1 8854 152 12 44 chr4 33356862 33358492 -150930170 - THE1C-int LTR MaLR 0 1580 4 1393 156 121 38 chr4 33358495 33358841 -150929821 - THE1C LTR MaLR 0 375 1 2030 324 13 41 chr4 33358841 33359185 -150929477 + L1PA13 LINE L1 440 755 -6032 1631 228 33 10 chr4 33359251 33359646 -150929016 + L1PA13 LINE L1 1513 1916 -4871 919 236 84 55 chr4 33359953 33360407 -150928255 + MLT1C LTR MaLR 1 467 0 287 266 11 21 chr4 33360784 33360878 -150927784 + (TA)n Simple_repeat Simple_repeat 2 94 0 202 349 99 36 chr4 33361176 33361480 -150927182 - L2 LINE L2 -337 2977 2655 189 147 0 0 chr4 33362049 33362083 -150926579 + (TC)n Simple_repeat Simple_repeat 2 35 0 2635 76 6 8 chr4 33362115 33362471 -150926191 + THE1A LTR MaLR 1 355 0 313 299 0 0 chr4 33362936 33363003 -150925659 - MLT1K LTR MaLR -342 246 180 625 237 56 47 chr4 33363008 33363223 -150925439 - MER20 DNA MER1_type 0 219 3 1729 196 25 11 chr4 33364246 33364604 -150924058 - MLT1A1 LTR MaLR 0 365 3 252 59 0 0 chr4 33364604 33364638 -150924024 + (CAT)n Simple_repeat Simple_repeat 3 36 0 1061 224 41 103 chr4 33364746 33365363 -150923299 + MLT1E3 LTR MaLR 7 610 -14 420 316 0 0 chr4 33365423 33365521 -150923141 + MIR SINE MIR 3 100 -162 183 80 0 0 chr4 33366027 33366052 -150922610 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 23 0 0 0 chr4 33367199 33367222 -150921440 + AT_rich Low_complexity Low_complexity 1 23 0 2451 119 3 17 chr4 33369810 33370170 -150918492 + THE1A LTR MaLR 1 355 0 11072 101 15 8 chr4 33370170 33371738 -150916924 + THE1A-int LTR MaLR 1 1580 0 2360 117 6 0 chr4 33371738 33372089 -150916573 + THE1A LTR MaLR 1 353 -2 421 289 118 21 chr4 33372363 33372550 -150916112 - MIR SINE MIR -3 259 55 240 309 80 37 chr4 33372568 33372730 -150915932 + L2 LINE L2 3133 3301 -12 4465 47 40 11 chr4 33374293 33374867 -150913795 + LTR10C LTR ERV1 1 591 0 274 320 13 0 chr4 33374998 33375073 -150913589 + polypyrimidine Low_complexity Low_complexity 5 80 0 2558 128 66 2 chr4 33375279 33375687 -150912975 + MER57B LTR ERV1 1 434 0 186 103 0 0 chr4 33376463 33376492 -150912170 + (TTTTG)n Simple_repeat Simple_repeat 4 32 0 519 92 0 0 chr4 33377455 33377542 -150911120 + (TG)n Simple_repeat Simple_repeat 2 88 0 2032 86 4 11 chr4 33380784 33381103 -150907559 + AluY SINE Alu 17 333 0 209 32 0 32 chr4 33382116 33382147 -150906515 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 2299 76 0 3 chr4 33382150 33382438 -150906224 - AluY SINE Alu -24 287 1 514 313 68 16 chr4 33382951 33383143 -150905519 - MIR3 SINE MIR -5 203 2 1601 152 61 7 chr4 33383582 33383892 -150904770 + L1MA4A LINE L1 5977 6303 0 7762 142 46 8 chr4 33384270 33385511 -150903151 + THE1C-int LTR MaLR 286 1573 -7 1933 154 56 8 chr4 33385517 33385875 -150902787 + THE1C LTR MaLR 1 375 0 374 369 45 0 chr4 33385952 33386131 -150902531 - MIR SINE MIR -70 192 6 308 211 29 0 chr4 33386965 33387069 -150901593 + (TA)n Simple_repeat Simple_repeat 1 107 0 465 128 51 0 chr4 33387072 33387150 -150901512 + THE1C LTR MaLR 97 178 -197 281 185 43 0 chr4 33387150 33387242 -150901420 + (TA)n Simple_repeat Simple_repeat 2 97 0 240 276 13 26 chr4 33387949 33388025 -150900637 + L2 LINE L2 3185 3259 -54 411 255 99 28 chr4 33389666 33389807 -150898855 + MER5A DNA MER1_type 3 153 -36 411 38 0 0 chr4 33389864 33389917 -150898745 + (GTTTG)n Simple_repeat Simple_repeat 2 54 0 1823 172 0 0 chr4 33389917 33390202 -150898460 - AluSx SINE Alu -27 285 1 282 254 14 0 chr4 33390420 33390491 -150898171 + L1ME LINE L1 5601 5672 -449 2470 70 0 0 chr4 33390540 33390841 -150897821 + AluY SINE Alu 1 301 -10 981 191 4 49 chr4 33440841 33441066 -150847596 - L1M2 LINE L1 -484 5807 5593 216 219 0 0 chr4 33441230 33441271 -150847391 + T-rich Low_complexity Low_complexity 1 41 0 23 33 0 0 chr4 33441918 33441948 -150846714 + AT_rich Low_complexity Low_complexity 1 30 0 35 63 0 0 chr4 33443533 33443596 -150845066 + AT_rich Low_complexity Low_complexity 1 63 0 238 303 13 13 chr4 33443620 33443696 -150844966 + MIR SINE MIR 51 126 -136 665 319 82 6 chr4 33443796 33444113 -150844549 + L2 LINE L2 796 1136 -2178 1022 304 131 38 chr4 33444612 33445171 -150843491 + L2 LINE L2 1163 1773 -1541 21 36 0 0 chr4 33445703 33445731 -150842931 + AT_rich Low_complexity Low_complexity 1 28 0 448 236 9 125 chr4 33446132 33446555 -150842107 + L1MC5 LINE L1 6900 7273 -688 224 237 92 0 chr4 33446698 33446774 -150841888 + L2 LINE L2 3163 3245 -68 458 286 132 78 chr4 33447034 33447153 -150841509 - HAL1 LINE L1 -135 2372 2261 1002 136 51 6 chr4 33447153 33447330 -150841332 - L1PA15 LINE L1 0 6165 5981 458 286 132 78 chr4 33447330 33448035 -150840627 - HAL1 LINE L1 -246 2261 1503 507 218 85 24 chr4 33448335 33448546 -150840116 - MER113 DNA MER1_type? -216 305 82 2175 57 7 3 chr4 33449855 33450138 -150838524 + L1PA7 LINE L1 5871 6154 0 188 151 151 57 chr4 33451363 33451416 -150837246 + L2 LINE L2 3255 3312 -1 231 296 138 54 chr4 33452359 33452562 -150836100 + MIR SINE MIR 43 262 0 396 270 95 7 chr4 33452639 33452776 -150835886 - L2 LINE L2 0 3313 3165 1817 87 11 30 chr4 33452809 33453073 -150835589 + AluSx SINE Alu 39 297 -15 549 286 67 6 chr4 33453140 33453318 -150835344 - MIR SINE MIR -37 225 37 683 238 99 6 chr4 33454287 33454459 -150834203 - MER5A DNA MER1_type -1 188 1 755 251 165 39 chr4 33454625 33455241 -150833421 - LTR41 LTR ERVL -12 761 5 282 311 33 0 chr4 33455378 33455468 -150833194 + L2 LINE L2 3178 3270 -2 21 0 0 0 chr4 33456456 33456477 -150832185 + AT_rich Low_complexity Low_complexity 1 21 0 2014 124 0 0 chr4 33456484 33456822 -150831840 - AluSx SINE Alu 0 338 1 2068 197 24 53 chr4 33457152 33457696 -150830966 - L1MA7 LINE L1 -6 6285 5758 252 296 11 11 chr4 33458331 33458419 -150830243 + GA-rich Low_complexity Low_complexity 1 88 0 759 156 56 38 chr4 33458666 33458826 -150829836 + MER31B LTR ERV1 300 462 -4 2075 118 7 3 chr4 33458839 33459144 -150829518 - AluSp SINE Alu -7 306 1 587 282 120 24 chr4 33459190 33459481 -150829181 + L2 LINE L2 2995 3313 0 201 250 0 0 chr4 33459720 33459760 -150828902 + polypurine Low_complexity Low_complexity 3 42 0 276 185 31 15 chr4 33459771 33459836 -150828826 + MER34B LTR ERV1 405 470 -95 21 36 0 0 chr4 33460160 33460188 -150828474 + AT_rich Low_complexity Low_complexity 1 28 0 576 118 0 126 chr4 33460440 33460567 -150828095 + MER34B LTR ERV1 1 111 -454 1473 147 15 15 chr4 33460667 33460933 -150827729 + MER34B LTR ERV1 295 560 -5 33 97 0 0 chr4 33461887 33461990 -150826672 + AT_rich Low_complexity Low_complexity 1 103 0 1696 142 30 53 chr4 33462098 33462401 -150826261 + AluSg SINE Alu 1 296 -14 204 277 0 0 chr4 33462806 33462871 -150825791 + (TAGA)n Simple_repeat Simple_repeat 1 65 0 212 0 36 0 chr4 33463695 33463723 -150824939 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 210 71 0 0 chr4 33464409 33464437 -150824225 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 217 244 26 39 chr4 33465253 33465331 -150823331 + CT-rich Low_complexity Low_complexity 6 82 0 250 362 43 0 chr4 33465681 33465797 -150822865 - MIR3 SINE MIR -45 163 43 863 260 21 47 chr4 33466115 33466454 -150822208 + MLT2C1 LTR ERVL 3 332 -65 623 69 30 23 chr4 33466495 33466626 -150822036 + (TCTA)n Simple_repeat Simple_repeat 2 133 0 254 83 0 0 chr4 33466632 33466668 -150821994 + MLT2F LTR ERVL 620 655 -8 23 0 0 0 chr4 33467119 33467142 -150821520 + AT_rich Low_complexity Low_complexity 1 23 0 449 279 71 33 chr4 33467589 33467761 -150820901 + MLT1J1 LTR MaLR 274 446 0 490 306 89 62 chr4 33469802 33470138 -150818524 + L2 LINE L2 2969 3313 0 201 196 0 0 chr4 33470138 33470184 -150818478 + (TGAG)n Simple_repeat Simple_repeat 2 47 0 2419 186 105 21 chr4 33470224 33470793 -150817869 + LTR48 LTR ERV1 1 617 -170 263 170 21 0 chr4 33470850 33470897 -150817765 - LTR48B LTR ERV1 -87 557 510 1880 144 24 3 chr4 33471268 33471559 -150817103 + AluSx SINE Alu 1 297 -15 29 70 0 0 chr4 33471571 33471628 -150817034 + AT_rich Low_complexity Low_complexity 1 57 0 328 225 22 22 chr4 33471927 33472016 -150816646 + MIR SINE MIR 146 234 -28 384 181 0 0 chr4 33472456 33472539 -150816123 + GA-rich Low_complexity Low_complexity 2 84 0 447 250 83 81 chr4 33473269 33473447 -150815215 + MIR3 SINE MIR 8 182 -26 189 0 0 0 chr4 33473836 33473857 -150814805 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 573 294 75 0 chr4 33473857 33474044 -150814618 - MER58A DNA MER1_type -22 202 2 374 192 40 20 chr4 33474196 33474295 -150814367 + L1MA9 LINE L1 6153 6253 -59 5529 142 11 34 chr4 33474295 33475881 -150812781 + pTR5 LTR ERV1 745 2436 -2 375 127 0 28 chr4 33475882 33475953 -150812709 + L1MA9 LINE L1 6243 6311 -1 1703 141 56 0 chr4 33476219 33476489 -150812173 + AluSq SINE Alu 1 285 -28 2062 119 3 0 chr4 33476628 33476922 -150811740 + AluSq SINE Alu 1 295 -18 827 332 151 11 chr4 33477541 33478071 -150810591 + L2 LINE L2 1879 2482 -832 267 392 15 30 chr4 33478141 33478340 -150810322 + L2 LINE L2 2665 2860 -454 283 300 106 62 chr4 33478479 33478752 -150809910 + L2 LINE L2 3029 3313 0 2258 133 23 6 chr4 33480699 33481051 -150807611 + THE1B LTR MaLR 1 358 -6 245 348 92 12 chr4 33481652 33481816 -150806846 - MIR3 SINE MIR -9 199 23 2921 155 6 22 chr4 33482198 33482734 -150805928 - L1PA16 LINE L1 -9 6157 5631 24 0 0 0 chr4 33482752 33482776 -150805886 + AT_rich Low_complexity Low_complexity 1 24 0 275 289 52 31 chr4 33483041 33483138 -150805524 + L2 LINE L2 3215 3313 0 2487 57 0 25 chr4 33484441 33484759 -150803903 + AluY SINE Alu 1 310 -1 393 286 10 101 chr4 33484764 33484963 -150803699 - MLT1J1 LTR MaLR -148 298 118 2241 86 3 49 chr4 33484995 33485321 -150803341 + AluSp SINE Alu 1 311 -2 21 0 0 0 chr4 33486483 33486504 -150802158 + AT_rich Low_complexity Low_complexity 1 21 0 182 350 17 17 chr4 33486704 33486764 -150801898 - MIR SINE MIR -133 75 16 203 200 0 40 chr4 33486869 33486944 -150801718 + A-rich Low_complexity Low_complexity 1 72 0 327 314 105 19 chr4 33487881 33488139 -150800523 + L2 LINE L2 2624 2903 -411 25 0 0 0 chr4 33488553 33488578 -150800084 + AT_rich Low_complexity Low_complexity 1 25 0 1308 157 14 128 chr4 33488670 33489015 -150799647 + AluJb SINE Alu 1 306 -6 260 316 61 26 chr4 33489358 33489472 -150799190 + MIR SINE MIR 21 138 -70 23 0 0 0 chr4 33489668 33489691 -150798971 + AT_rich Low_complexity Low_complexity 1 23 0 3806 153 39 14 chr4 33490732 33491423 -150797239 + Tigger1 DNA MER2_type 1710 2417 -1 204 222 0 0 chr4 33491677 33491713 -150796949 + polypurine Low_complexity Low_complexity 4 39 0 566 302 54 15 chr4 33491870 33492075 -150796587 + MIR SINE MIR 31 243 -19 23 33 0 0 chr4 33492099 33492129 -150796533 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr4 33492252 33492273 -150796389 + AT_rich Low_complexity Low_complexity 1 21 0 319 253 75 40 chr4 33492273 33492447 -150796215 + L1ME4a LINE L1 5942 6121 0 216 163 0 0 chr4 33492653 33492696 -150795966 + A-rich Low_complexity Low_complexity 1 43 0 1358 184 80 3 chr4 33492778 33493066 -150795596 + 7SLRNA srpRNA srpRNA 2 311 -9 583 295 34 19 chr4 33493922 33494129 -150794533 + MIR SINE MIR 12 221 -41 407 292 17 8 chr4 33494394 33494514 -150794148 + L2 LINE L2 2184 2304 -1010 451 208 9 57 chr4 33494655 33494761 -150793901 + MER5A DNA MER1_type 3 103 -86 873 97 0 0 chr4 33494762 33494875 -150793787 - AluSg SINE Alu -197 113 1 189 351 39 13 chr4 33495263 33495340 -150793322 - L2 LINE L2 0 3313 3235 8294 160 46 10 chr4 33495424 33495966 -150792696 + Tigger1 DNA MER2_type 30 551 -1867 1815 159 25 0 chr4 33495966 33496287 -150792375 + AluSx SINE Alu 1 328 0 8294 160 46 10 chr4 33496287 33497220 -150791442 + Tigger1 DNA MER2_type 551 1559 -859 1349 98 10 10 chr4 33497805 33498009 -150790653 - L1PA14 LINE L1 -5 6156 5953 17838 169 48 7 chr4 33498015 33501871 -150786791 - L1PA12 LINE L1 -3537 4047 42 198 0 0 0 chr4 33501897 33501919 -150786743 + (A)n Simple_repeat Simple_repeat 1 22 0 240 321 223 0 chr4 33502361 33502545 -150786117 + L2 LINE L2 2737 2961 -353 221 407 50 7 chr4 33502731 33502871 -150785791 - L2 LINE L2 -229 3043 2898 643 247 77 52 chr4 33503273 33503701 -150784961 - MLT1D LTR MaLR 0 505 21 28 29 0 0 chr4 33504167 33504202 -150784460 + AT_rich Low_complexity Low_complexity 1 35 0 399 271 41 0 chr4 33504260 33504382 -150784280 + MLT2E LTR ERVL 1 127 -501 24 0 0 0 chr4 33507329 33507353 -150781309 + AT_rich Low_complexity Low_complexity 1 24 0 186 43 0 0 chr4 33508758 33508781 -150779881 + (TTG)n Simple_repeat Simple_repeat 2 24 0 905 247 24 43 chr4 33509532 33509787 -150778875 + MLT1A2 LTR MaLR 6 255 -119 2423 93 0 3 chr4 33510056 33510369 -150778293 - AluSq SINE Alu -1 312 1 315 241 23 35 chr4 33512461 33512548 -150776114 + MIR3 SINE MIR 87 172 -36 731 237 13 0 chr4 33512650 33512983 -150775679 + FRAM SINE Alu 1 199 0 1014 149 0 6 chr4 33512802 33513016 -150775646 + (GAA)n Simple_repeat Simple_repeat 1 213 0 198 103 0 0 chr4 33513850 33513879 -150774783 + (TATG)n Simple_repeat Simple_repeat 4 32 0 355 169 0 0 chr4 33514268 33514327 -150774335 - MER30 DNA MER1_type -36 194 136 2091 132 7 0 chr4 33514343 33514639 -150774023 + AluSx SINE Alu 3 300 -12 25 0 0 0 chr4 33515025 33515050 -150773612 + AT_rich Low_complexity Low_complexity 1 25 0 22 99 0 0 chr4 33515250 33515321 -150773341 + AT_rich Low_complexity Low_complexity 1 71 0 1875 181 56 0 chr4 33515577 33515898 -150772764 + LTR32 LTR ERVL 14 352 -119 766 190 0 19 chr4 33515941 33516099 -150772563 + LTR32 LTR ERVL 317 471 0 183 231 46 15 chr4 33516154 33516219 -150772443 - MIR SINE MIR -95 167 101 1790 228 78 5 chr4 33516273 33516860 -150771802 - MER39 LTR ERV1 0 707 4 523 289 59 16 chr4 33516883 33517070 -150771592 + MIR SINE MIR 68 262 0 608 86 0 11 chr4 33517124 33517217 -150771445 + (TTCC)n Simple_repeat Simple_repeat 1 92 0 223 383 19 9 chr4 33517407 33517514 -150771148 - MIR SINE MIR -96 166 59 295 289 31 19 chr4 33517807 33517966 -150770696 + (TATATG)n Simple_repeat Simple_repeat 4 164 0 252 322 126 37 chr4 33518389 33518603 -150770059 + MIR SINE MIR 24 256 -6 1723 213 18 45 chr4 33518808 33519297 -150769365 + MER31A LTR ERV1 1 476 -9 524 319 97 42 chr4 33519318 33519792 -150768870 + L2 LINE L2 2183 2682 -632 1365 211 68 53 chr4 33519800 33520253 -150768409 + MER31B LTR ERV1 3 541 -2 201 147 0 0 chr4 33520311 33520345 -150768317 + (AAATG)n Simple_repeat Simple_repeat 2 35 0 238 348 78 10 chr4 33520420 33520624 -150768038 + L2 LINE L2 2967 3184 -129 201 300 71 0 chr4 33522229 33522299 -150766363 - MER91C DNA MER1_type -30 110 36 696 273 64 29 chr4 33523036 33523534 -150765128 + L1ME3A LINE L1 5378 5894 -276 1780 176 6 6 chr4 33523611 33523923 -150764739 + AluJb SINE Alu 1 312 0 237 185 15 15 chr4 33524585 33524650 -150764012 - LTR49 LTR ERV1 -36 559 495 1773 180 0 3 chr4 33524722 33525017 -150763645 + AluSx SINE Alu 1 294 -18 277 43 43 0 chr4 33525017 33525064 -150763598 + (TA)n Simple_repeat Simple_repeat 1 49 0 3030 127 60 10 chr4 33525071 33525589 -150763073 - MER39B LTR ERV1 -109 544 1 464 165 0 0 chr4 33525839 33525930 -150762732 - L1MA9 LINE L1 -1 6311 6221 735 170 30 14 chr4 33525939 33526097 -150762565 - L1MA9 LINE L1 -137 6154 5991 2053 134 3 0 chr4 33527613 33527897 -150760765 + AluSx SINE Alu 2 286 -26 385 40 66 0 chr4 33527897 33527973 -150760689 + (TA)n Simple_repeat Simple_repeat 1 81 0 2112 106 0 26 chr4 33528074 33528376 -150760286 + AluY SINE Alu 1 294 -17 306 194 0 0 chr4 33528377 33528439 -150760223 + (CATA)n Simple_repeat Simple_repeat 3 64 0 267 340 34 20 chr4 33529286 33529433 -150759229 - MLT1K LTR MaLR -168 420 272 296 255 39 0 chr4 33530053 33530206 -150758456 + CT-rich Low_complexity Low_complexity 2 160 0 25 0 0 0 chr4 33530637 33530662 -150758000 + AT_rich Low_complexity Low_complexity 1 25 0 1027 207 31 22 chr4 33530882 33531109 -150757553 - MLT1C LTR MaLR -48 419 191 1945 157 0 7 chr4 33531112 33531417 -150757245 - AluJo SINE Alu -9 303 1 296 307 121 62 chr4 33531852 33532109 -150756553 + MLT1J2 LTR MaLR 64 335 -115 29 0 0 0 chr4 33532132 33532161 -150756501 + AT_rich Low_complexity Low_complexity 1 29 0 295 369 34 73 chr4 33532246 33532479 -150756183 + L2 LINE L2 3032 3255 -17 7663 81 21 2 chr4 33532763 33534598 -150754064 + L1PA7 LINE L1 4289 6153 -1 207 0 0 0 chr4 33535825 33535848 -150752814 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 14900 216 31 43 chr4 33535851 33536919 -150751743 + L1PA16 LINE L1 10 1090 -5765 2350 126 22 0 chr4 33536919 33537275 -150751387 + THE1B LTR MaLR 1 364 0 14900 216 31 43 chr4 33537275 33538426 -150750236 + L1PA16 LINE L1 1090 2254 -4601 1727 163 4 0 chr4 33538426 33538696 -150749966 + AluSx SINE Alu 3 273 -39 219 36 0 0 chr4 33538704 33538732 -150749930 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 14900 216 31 43 chr4 33538732 33541733 -150746929 + L1PA16 LINE L1 2261 5297 -1558 189 0 0 0 chr4 33541733 33541754 -150746908 + (TAAAA)n Simple_repeat Simple_repeat 5 25 0 14900 216 31 43 chr4 33541754 33541932 -150746730 + L1PA16 LINE L1 5297 5476 -1379 3035 85 71 2 chr4 33541932 33542316 -150746346 + MLT2A2 LTR ERVL 1 418 -35 693 24 0 0 chr4 33542316 33542399 -150746263 + (TCTA)n Simple_repeat Simple_repeat 3 85 0 3035 85 71 2 chr4 33542399 33542438 -150746224 + MLT2A2 LTR ERVL 418 453 0 14900 216 31 43 chr4 33542438 33543236 -150745426 + L1PA16 LINE L1 5476 6112 -743 2885 163 72 0 chr4 33543338 33543892 -150744770 + L1PA16 LINE L1 6271 6864 -5 704 308 124 14 chr4 33544595 33544942 -150743720 - LTR16A LTR ERVL -2 448 64 227 203 34 17 chr4 33545394 33545453 -150743209 + L2 LINE L2 3202 3261 -11 333 200 0 0 chr4 33546310 33546365 -150742297 + Tigger5 DNA MER2_type 1 55 -2268 * 375 162 15 15 chr4 33546334 33546402 -150742260 + Tigger5 DNA MER2_type 2251 2318 -5 363 261 0 11 chr4 33546424 33546512 -150742150 - Tigger5 DNA MER2_type -2235 88 2 440 195 0 11 chr4 33546565 33546652 -150742010 + Tigger5 DNA MER2_type 2238 2323 0 3226 195 6 5 chr4 33547707 33548352 -150740310 + L1MB3 LINE L1 5527 6172 -11 65 45 0 9 chr4 33548464 33548502 -150740160 + AT_rich Low_complexity Low_complexity 1 38 -72 2211 102 0 0 chr4 33548502 33548797 -150739865 + AluSx SINE Alu 3 297 -15 65 45 0 9 chr4 33548797 33548869 -150739793 + AT_rich Low_complexity Low_complexity 38 110 0 2168 90 3 10 chr4 33549341 33549640 -150739022 + AluSp SINE Alu 1 297 -16 185 395 32 0 chr4 33550046 33550170 -150738492 + L2 LINE L2 3181 3308 -5 1842 68 38 4 chr4 33550478 33550741 -150737921 + AluY SINE Alu 19 290 -21 186 351 13 13 chr4 33553373 33553450 -150735212 + MIR SINE MIR 56 132 -130 196 263 35 18 chr4 33553475 33553532 -150735130 - L2 LINE L2 -1 3312 3255 1037 199 104 128 chr4 33554755 33554798 -150733864 - MLT2D LTR ERVL 0 414 372 369 0 0 0 chr4 33554798 33554839 -150733823 + (TG)n Simple_repeat Simple_repeat 2 42 0 1037 199 104 128 chr4 33554839 33555218 -150733444 - MLT2D LTR ERVL -42 372 2 287 376 119 29 chr4 33555670 33555880 -150732782 + L3 LINE CR1 1340 1568 -9 283 312 68 51 chr4 33555945 33556256 -150732406 + L1ME LINE L1 5539 5854 -267 555 163 0 78 chr4 33556298 33556427 -150732235 + L1ME LINE L1 5588 5706 -458 21 36 0 0 chr4 33558158 33558186 -150730476 + AT_rich Low_complexity Low_complexity 1 28 0 838 197 60 16 chr4 33559141 33559324 -150729338 + MER2 DNA MER2_type 155 345 0 910 121 0 0 chr4 33560011 33560143 -150728519 + MLT2A1 LTR ERVL 1 132 -312 379 311 93 13 chr4 33560123 33560274 -150728388 + MLT1J2 LTR MaLR 50 212 -238 * 270 241 93 56 chr4 33560646 33560754 -150727908 - LTR67 LTR ERVL -17 540 429 2258 109 0 0 chr4 33561064 33561366 -150727296 + AluY SINE Alu 3 304 -7 6540 201 67 45 chr4 33562469 33564267 -150724395 + L1MCa LINE L1 3 1932 -4494 1872 161 0 0 chr4 33564270 33564549 -150724113 + AluSx SINE Alu 4 282 -30 246 128 0 0 chr4 33564563 33564602 -150724060 + (TA)n Simple_repeat Simple_repeat 2 40 0 347 189 126 0 chr4 33564724 33564835 -150723827 + AluSc SINE Alu 155 279 -20 1016 175 133 45 chr4 33564890 33565088 -150723574 + L1MCa LINE L1 1934 2170 -4256 391 173 0 25 chr4 33565088 33565169 -150723493 + MADE1 DNA Mariner 1 79 -1 1016 175 133 45 chr4 33565169 33565279 -150723383 + L1MCa LINE L1 2170 2269 -4157 1096 79 0 7 chr4 33565279 33565419 -150723243 + AluSq/x SINE Alu 1 139 -174 203 170 19 38 chr4 33565629 33565682 -150722980 + (TTTG)n Simple_repeat Simple_repeat 1 52 0 23 0 0 0 chr4 33566188 33566211 -150722451 + AT_rich Low_complexity Low_complexity 1 23 0 7241 199 37 24 chr4 33567374 33568996 -150719666 + L1PA16 LINE L1 2 2072 -4777 * 11968 231 21 26 chr4 33568981 33573413 -150715249 + L1PA16 LINE L1 2463 6860 -9 961 195 284 3 chr4 33574568 33574860 -150713802 - MLT1A2 LTR MaLR 0 374 1 540 235 251 22 chr4 33574970 33575149 -150713513 + MER58A DNA MER1_type 1 220 -4 1057 308 121 10 chr4 33576000 33576481 -150712181 + MER69 DNA AcHobo 106 639 -587 367 280 178 0 chr4 33576483 33576758 -150711904 + MER69 DNA AcHobo 2039 2362 -164 209 208 0 19 chr4 33579675 33579728 -150708934 + (CAA)n Simple_repeat Simple_repeat 1 52 0 192 125 0 0 chr4 33579946 33579978 -150708684 + (GA)n Simple_repeat Simple_repeat 1 32 0 1293 191 12 12 chr4 33580212 33580469 -150708193 + L1MB1 LINE L1 5911 6167 -1 2025 117 0 0 chr4 33582421 33582702 -150705960 + AluSc SINE Alu 15 295 -14 392 0 30 45 chr4 33583165 33583231 -150705431 + (TTTC)n Simple_repeat Simple_repeat 2 66 0 323 284 11 0 chr4 33583247 33583342 -150705320 - L1MDa LINE L1 -6435 105 10 25 0 0 0 chr4 33583551 33583576 -150705086 + AT_rich Low_complexity Low_complexity 1 25 0 2135 118 7 0 chr4 33584726 33585030 -150703632 + AluSx SINE Alu 1 306 -6 21 57 0 0 chr4 33585990 33586025 -150702637 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr4 33587308 33587330 -150701332 + AT_rich Low_complexity Low_complexity 1 22 0 39 0 0 0 chr4 33587524 33587563 -150701099 + AT_rich Low_complexity Low_complexity 1 39 0 898 265 111 31 chr4 33587862 33589192 -150699470 + L1ME1 LINE L1 4075 5664 -502 1762 177 3 6 chr4 33589192 33589503 -150699159 - AluJb SINE Alu -2 310 1 898 265 111 31 chr4 33589503 33590000 -150698662 + L1ME1 LINE L1 5664 6120 -46 1496 123 9 4 chr4 33590437 33590665 -150697997 + LTR8A LTR ERV1 263 491 -236 246 62 0 0 chr4 33590676 33590708 -150697954 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1737 131 6 59 chr4 33590708 33591028 -150697634 - MER50 LTR ERV1 -135 599 297 1317 173 75 25 chr4 33591165 33591448 -150697214 + LTR8A LTR ERV1 406 725 -2 279 0 0 0 chr4 33591648 33591679 -150696983 + (TC)n Simple_repeat Simple_repeat 2 32 0 970 101 0 7 chr4 33591680 33591818 -150696844 + MER50 LTR ERV1 467 603 -131 240 167 0 0 chr4 33591892 33591940 -150696722 + (TA)n Simple_repeat Simple_repeat 1 48 0 22 0 0 0 chr4 33592406 33592428 -150696234 + AT_rich Low_complexity Low_complexity 1 22 0 682 318 58 58 chr4 33592666 33593112 -150695550 - LTR16B LTR ERVL -13 451 6 330 293 36 14 chr4 33593125 33593265 -150695397 - HERV16 LTR ERVL -64 4932 4790 1094 255 24 32 chr4 33593356 33593697 -150694965 - MLT1A1 LTR MaLR -27 338 1 514 341 28 28 chr4 33593760 33594085 -150694577 - HERVL LTR ERVL -624 5140 4816 189 191 43 85 chr4 33594098 33594145 -150694517 - L3 LINE CR1 -238 1339 1295 308 336 0 0 chr4 33594159 33594266 -150694396 - HERVL LTR ERVL -1029 4735 4629 * 356 334 5 36 chr4 33594256 33594524 -150694138 - HERVL LTR ERVL -2256 3229 2976 442 113 52 0 chr4 33594571 33594668 -150693994 + (TA)n Simple_repeat Simple_repeat 2 103 0 * 1757 331 46 36 chr4 33594667 33595841 -150692821 - HERVL LTR ERVL -2082 2914 1697 207 0 0 0 chr4 33595855 33595878 -150692784 + (TATG)n Simple_repeat Simple_repeat 4 26 0 1203 332 72 25 chr4 33596077 33596797 -150691865 - HERVL LTR ERVL -3553 1443 690 1375 121 232 11 chr4 33597496 33597776 -150690886 + MER61A LTR ERV1 1 342 -1 369 82 0 0 chr4 33597835 33597884 -150690778 + MADE1 DNA Mariner 3 51 -29 1119 274 142 18 chr4 33598537 33599038 -150689624 + L1ME3 LINE L1 5591 6153 -9 201 306 20 0 chr4 33599681 33599730 -150688932 - L2 LINE L2 -89 3183 3134 2984 134 15 0 chr4 33600596 33601073 -150687589 - LTR19A LTR ERV1 -2 484 1 21 100 0 0 chr4 33602159 33602229 -150686433 + AT_rich Low_complexity Low_complexity 1 70 0 1160 271 121 12 chr4 33602361 33602782 -150685880 + MLT1C LTR MaLR 1 467 0 359 282 69 19 chr4 33603302 33603547 -150685115 - L1MEd LINE L1 -4817 1312 1023 24 0 0 0 chr4 33603641 33603665 -150684997 + AT_rich Low_complexity Low_complexity 1 24 0 879 313 59 32 chr4 33603668 33604106 -150684556 - L1MEd LINE L1 -5257 862 413 951 280 73 21 chr4 33604165 33604643 -150684019 + L1ME3A LINE L1 5530 6032 -138 196 376 97 4 chr4 33604764 33604990 -150683672 + L2 LINE L2 2716 2962 -352 201 336 30 76 chr4 33605196 33605327 -150683335 + L2 LINE L2 3147 3271 -1 22 0 0 0 chr4 33605578 33605600 -150683062 + AT_rich Low_complexity Low_complexity 1 22 0 384 263 95 29 chr4 33606040 33606177 -150682485 - MIR SINE MIR -64 198 53 26 0 0 0 chr4 33607558 33607584 -150681078 + AT_rich Low_complexity Low_complexity 1 26 0 230 346 58 0 chr4 33607853 33607957 -150680705 - L2 LINE L2 -4 3309 3200 21 36 0 0 chr4 33608099 33608127 -150680535 + AT_rich Low_complexity Low_complexity 1 28 0 333 343 118 39 chr4 33608164 33608502 -150680160 - L2 LINE L2 -8 3264 2900 2332 69 0 20 chr4 33609037 33609341 -150679321 - AluY SINE Alu -13 298 1 188 297 31 16 chr4 33609842 33609906 -150678756 + MIR SINE MIR 36 100 -108 302 247 11 43 chr4 33610136 33610229 -150678433 + CT-rich Low_complexity Low_complexity 1 90 0 200 280 27 40 chr4 33610232 33610307 -150678355 + MIR3 SINE MIR 125 198 -10 270 291 84 67 chr4 33610952 33611131 -150677531 + MIR SINE MIR 37 218 -44 22 35 0 0 chr4 33613306 33613335 -150675327 + AT_rich Low_complexity Low_complexity 1 29 0 223 311 54 0 chr4 33613424 33613498 -150675164 - MIR SINE MIR -60 148 71 23 33 0 0 chr4 33613650 33613680 -150674982 + AT_rich Low_complexity Low_complexity 1 30 0 466 289 109 6 chr4 33613935 33614091 -150674571 + MIR SINE MIR 47 218 -44 262 255 11 53 chr4 33614524 33614618 -150674044 - MER103 DNA DNA -75 91 2 384 350 43 6 chr4 33614774 33614937 -150673725 + MIR SINE MIR 45 213 -49 348 64 0 0 chr4 33615049 33615096 -150673566 + (TTCC)n Simple_repeat Simple_repeat 3 49 0 2112 107 0 41 chr4 33615097 33615416 -150673246 - AluSp SINE Alu -7 306 1 9947 187 29 29 chr4 33616562 33620038 -150668624 - L1MA6 LINE L1 0 6482 3012 4302 254 43 41 chr4 33620038 33621872 -150666790 - L1MA6 LINE L1 -3950 2378 539 251 328 41 25 chr4 33621903 33622025 -150666637 - L1MA6 LINE L1 -5517 732 609 830 311 33 46 chr4 33622272 33622729 -150665933 - L1MA6 LINE L1 -5504 745 295 227 366 0 0 chr4 33622927 33623009 -150665653 - L2 LINE L2 -3 3269 3188 226 244 0 0 chr4 33623173 33623214 -150665448 - L2 LINE L2 -214 3058 3018 2341 69 0 20 chr4 33623255 33623560 -150665102 + AluY SINE Alu 1 299 -12 615 341 41 46 chr4 33624428 33625055 -150663607 - HERVL LTR ERVL -2499 2497 1855 970 9 0 18 chr4 33625232 33625342 -150663320 - AluSc SINE Alu -181 128 21 1429 206 36 46 chr4 33626824 33627236 -150661426 - Tigger2 DNA MER2_type -329 2389 1982 * 5050 150 48 3 chr4 33627207 33628074 -150660588 - Tigger2 DNA MER2_type -510 2208 1303 3088 136 16 2 chr4 33628872 33629356 -150659306 + LTR8A LTR ERV1 1 491 -236 246 62 0 0 chr4 33629367 33629399 -150659263 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1521 163 6 59 chr4 33629399 33629719 -150658943 - MER50 LTR ERV1 -135 599 297 332 239 0 106 chr4 33629978 33630091 -150658571 + Tigger2 DNA MER2_type 2608 2708 -10 191 266 16 16 chr4 33630168 33630232 -150658430 + MIR SINE MIR 65 128 -134 202 252 108 54 chr4 33630501 33630612 -150658050 + MIR SINE MIR 125 241 -21 205 297 50 40 chr4 33630632 33630733 -150657929 + L3 LINE CR1 1211 1312 -265 621 298 109 42 chr4 33631490 33631893 -150656769 + L1MDa LINE L1 33 462 -6078 256 293 17 0 chr4 33632096 33632154 -150656508 + L1MDa LINE L1 811 869 -5671 1181 205 79 48 chr4 33632433 33632853 -150655809 + L1MDa LINE L1 1025 1457 -5086 2331 63 3 19 chr4 33633045 33633360 -150655302 - AluY SINE Alu -1 310 1 24 53 0 0 chr4 33633788 33633826 -150654836 + AT_rich Low_complexity Low_complexity 1 38 0 3355 291 32 33 chr4 33634455 33635656 -150653006 - L1M2a LINE L1 -5962 1206 7 271 196 0 18 chr4 33635663 33635719 -150652943 + MER34 LTR ERV1 176 230 -312 772 288 93 21 chr4 33635823 33636047 -150652615 + MER90 LTR ERV1 41 306 -269 3780 140 22 64 chr4 33636047 33636768 -150651894 - LTR8 LTR ERV1 0 691 1 772 288 93 21 chr4 33636768 33636928 -150651734 + MER90 LTR ERV1 306 453 -122 21 36 0 0 chr4 33637116 33637144 -150651518 + AT_rich Low_complexity Low_complexity 1 28 0 333 0 0 0 chr4 33638051 33638088 -150650574 + (TG)n Simple_repeat Simple_repeat 2 38 0 263 312 46 18 chr4 33638172 33638281 -150650381 - MLT1J LTR MaLR -344 167 56 4831 115 3 0 chr4 33638991 33639697 -150648965 - L1PA12 LINE L1 0 6168 5461 975 259 94 49 chr4 33639700 33640476 -150648186 - L1M1 LINE L1 -3966 3599 2789 366 247 62 90 chr4 33640592 33640687 -150647975 - MLT1B LTR MaLR -217 173 84 1950 156 7 0 chr4 33640687 33640994 -150647668 + AluSq SINE Alu 2 310 -3 366 247 62 90 chr4 33640994 33641076 -150647586 - MLT1B LTR MaLR -306 84 1 836 284 66 20 chr4 33641143 33641446 -150647216 + MLT1D LTR MaLR 137 453 -52 2474 116 0 17 chr4 33641458 33641871 -150646791 - L1PA5 LINE L1 0 6154 5749 5347 134 10 14 chr4 33641996 33642385 -150646277 - L1PA13 LINE L1 -10 6153 5764 1320 151 24 114 chr4 33642385 33642717 -150645945 - AluYb8 SINE Alu -16 302 1 5347 134 10 14 chr4 33642717 33643122 -150645540 - L1PA13 LINE L1 -399 5764 5358 1731 93 0 0 chr4 33643122 33643337 -150645325 - AluSc SINE Alu -11 298 84 5347 134 10 14 chr4 33643337 33643592 -150645070 - L1PA13 LINE L1 -805 5358 5104 2824 205 5 2 chr4 33643695 33644266 -150644396 + L1P LINE L1 2407 2979 -3167 4198 201 7 3 chr4 33644269 33645145 -150643517 + L1P LINE L1 3778 4656 -1490 1200 109 0 60 chr4 33645145 33645328 -150643334 + AluSq SINE Alu 1 172 -141 797 157 0 0 chr4 33645328 33645443 -150643219 + AluSc SINE Alu 138 252 -57 970 123 0 0 chr4 33645444 33645574 -150643088 + AluSg/x SINE Alu 149 278 -34 861 129 0 7 chr4 33645599 33645738 -150642924 + L1P LINE L1 4644 4781 -1365 181 0 0 65 chr4 33646311 33646342 -150642320 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1440 175 0 16 chr4 33646358 33646615 -150642047 + L1MB3 LINE L1 5579 5831 -352 2192 97 0 59 chr4 33646616 33646937 -150641725 + AluSq SINE Alu 1 302 -11 1607 116 0 0 chr4 33647219 33647435 -150641227 - AluSg/x SINE Alu -1 309 94 38695 93 11 3 chr4 33647535 33652743 -150635919 - L1P LINE L1 -750 5396 151 798 129 21 0 chr4 33702745 33702885 -150585777 - L1PA5 LINE L1 -374 5780 5638 1355 283 58 30 chr4 33702889 33703420 -150585242 + MER74B LTR ERVL 66 611 -11 2523 243 75 3 chr4 33704484 33705195 -150583467 + L1MB8 LINE L1 5414 6175 -3 364 284 0 49 chr4 33706233 33706335 -150582327 - MER5A DNA MER1_type -55 134 38 216 0 0 0 chr4 33708397 33708421 -150580241 + (A)n Simple_repeat Simple_repeat 1 24 0 191 88 29 0 chr4 33709441 33709475 -150579187 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 219 122 49 0 chr4 33710088 33710129 -150578533 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 1030 222 10 28 chr4 33710323 33710724 -150577938 - MER31B LTR ERV1 -30 436 2 203 264 0 0 chr4 33710882 33710935 -150577727 - MIR SINE MIR -26 236 184 398 101 14 0 chr4 33712327 33712396 -150576266 + (TTCC)n Simple_repeat Simple_repeat 2 71 0 229 226 0 0 chr4 33712403 33712456 -150576206 - Charlie8 DNA MER1_type -2291 126 74 996 207 153 18 chr4 33712607 33712882 -150575780 - L1MB8 LINE L1 -16 6168 5857 255 368 40 16 chr4 33714033 33714158 -150574504 - MIR SINE MIR -124 138 11 1226 113 72 10 chr4 33714478 33714672 -150573990 - AluSc SINE Alu -20 289 84 915 221 57 94 chr4 33714723 33715126 -150573536 + MLT1B LTR MaLR 1 388 -2 268 75 0 25 chr4 33715876 33715916 -150572746 - MLT1I LTR MaLR 0 409 371 1046 106 129 18 chr4 33715962 33716132 -150572530 + MSTA LTR MaLR 5 193 -235 2957 180 37 28 chr4 33717258 33717941 -150570721 + L1MA7 LINE L1 5596 6284 -7 31 0 0 0 chr4 33718129 33718160 -150570502 + AT_rich Low_complexity Low_complexity 1 31 0 561 322 26 47 chr4 33719190 33719440 -150569222 + L2 LINE L2 2204 2447 -867 1419 231 22 22 chr4 33719440 33719804 -150568858 - MLT1A1 LTR MaLR 0 365 2 561 322 26 47 chr4 33719804 33719895 -150568767 + L2 LINE L2 2447 2538 -776 258 378 87 5 chr4 33720394 33720590 -150568072 + L2 LINE L2 2463 2674 -640 275 266 94 47 chr4 33720601 33720729 -150567933 + L2 LINE L2 3180 3313 0 661 205 13 26 chr4 33721085 33721241 -150567421 + MER105 DNA DNA 1 154 -50 310 266 0 0 chr4 33721245 33721324 -150567338 + MER105 DNA DNA 123 201 -3 956 120 25 0 chr4 33723100 33723258 -150565404 - AluY SINE Alu -148 163 2 384 310 28 21 chr4 33723719 33723861 -150564801 - MIR SINE MIR -1 261 119 932 221 81 110 chr4 33723861 33724226 -150564436 + MLT1A2 LTR MaLR 1 356 -18 327 352 19 0 chr4 33724245 33724353 -150564309 - MIR SINE MIR -140 122 13 1632 116 0 0 chr4 33724741 33724966 -150563696 - AluSg/x SINE Alu -10 302 78 24 0 0 0 chr4 33724967 33724991 -150563671 + AT_rich Low_complexity Low_complexity 1 24 0 350 407 9 30 chr4 33725823 33726157 -150562505 + L1M3a LINE L1 1614 1940 -5546 3291 262 23 34 chr4 33726774 33726974 -150561688 + L1M3a LINE L1 1898 2099 -5466 1661 188 0 23 chr4 33726974 33727282 -150561380 + AluJb SINE Alu 1 301 -11 3291 262 23 34 chr4 33727282 33728263 -150560399 + L1M3a LINE L1 2099 3066 -4499 752 151 14 50 chr4 33728925 33729064 -150559598 + FRAM SINE Alu 25 158 -18 28 0 0 0 chr4 33730196 33730224 -150558438 + AT_rich Low_complexity Low_complexity 1 28 0 731 244 76 5 chr4 33730414 33730611 -150558051 + MLT1D LTR MaLR 286 496 -9 208 273 68 0 chr4 33731893 33731937 -150556725 - L2 LINE L2 -22 3291 3245 187 277 0 0 chr4 33732992 33733039 -150555623 + MIR SINE MIR 216 262 0 496 250 104 10 chr4 33733186 33733378 -150555284 - MLT1H1 LTR MaLR -14 541 332 2193 81 3 0 chr4 33734637 33734934 -150553728 + AluY SINE Alu 12 309 -2 533 331 8 52 chr4 33735318 33735566 -150553096 - MIR SINE MIR -19 243 7 385 178 0 14 chr4 33735622 33735695 -150552967 - MLT1G LTR MaLR 0 590 519 298 257 97 35 chr4 33735788 33735932 -150552730 - MLT1I LTR MaLR -245 285 133 449 190 0 0 chr4 33737563 33737642 -150551020 - L1PB1 LINE L1 -291 5860 5782 235 154 39 0 chr4 33737630 33737682 -150550980 + L1MC4 LINE L1 6653 6706 -1336 * 749 70 0 0 chr4 33737686 33737786 -150550876 + L1PB1 LINE L1 5875 5974 -177 361 298 0 0 chr4 33738020 33738114 -150550548 - MLT1I LTR MaLR -229 180 87 324 247 12 0 chr4 33738513 33738594 -150550068 + MER99 DNA DNA 617 698 -130 45 0 0 0 chr4 33738600 33738645 -150550017 + AT_rich Low_complexity Low_complexity 1 45 0 273 246 14 0 chr4 33738782 33738851 -150549811 + T-rich Low_complexity Low_complexity 4 73 0 30 0 0 0 chr4 33738860 33738890 -150549772 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr4 33740591 33740629 -150548033 + AT_rich Low_complexity Low_complexity 1 38 0 28 71 0 0 chr4 33741440 33741496 -150547166 + AT_rich Low_complexity Low_complexity 1 56 0 180 0 0 0 chr4 33741664 33741684 -150546978 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 255 289 155 0 chr4 33742344 33742441 -150546221 + L2 LINE L2 3199 3310 -3 440 357 40 32 chr4 33742452 33742704 -150545958 + L2 LINE L2 2828 3081 -232 2277 66 3 41 chr4 33742982 33743302 -150545360 + AluY SINE Alu 1 308 -3 214 273 169 13 chr4 33744339 33744416 -150544246 + L2 LINE L2 3225 3313 0 21 0 0 0 chr4 33745966 33745987 -150542675 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr4 33747720 33747747 -150540915 + AT_rich Low_complexity Low_complexity 1 27 0 453 319 53 18 chr4 33748628 33748797 -150539865 - MLT1J2 LTR MaLR -62 388 214 484 287 8 0 chr4 33748801 33748923 -150539739 - MLT1J1 LTR MaLR -323 123 1 377 171 14 0 chr4 33749772 33749842 -150538820 - L1MA6 LINE L1 -174 6126 6056 * 547 142 113 3 chr4 33749835 33749953 -150538709 + L1MA6 LINE L1 6152 6288 -24 288 0 0 0 chr4 33751368 33751400 -150537262 + (CA)n Simple_repeat Simple_repeat 2 33 0 1461 109 0 5 chr4 33752565 33752775 -150535887 - THE1C LTR MaLR -28 347 139 283 337 189 34 chr4 33753197 33753968 -150534694 - L2 LINE L2 -534 2780 1890 22 35 0 0 chr4 33754314 33754343 -150534319 + AT_rich Low_complexity Low_complexity 1 29 0 1632 124 16 8 chr4 33754595 33754853 -150533809 - THE1C LTR MaLR 0 375 116 3962 41 2 0 chr4 33754854 33755338 -150533324 + L1PA5 LINE L1 5670 6154 0 287 699 0 0 chr4 33755338 33755481 -150533181 + (TA)n Simple_repeat Simple_repeat 1 143 0 272 178 0 5 chr4 33755481 33755567 -150533095 - THE1B LTR MaLR -246 129 1 247 327 117 12 chr4 33755617 33755779 -150532883 - MIR SINE MIR -48 214 36 498 219 36 55 chr4 33755822 33756041 -150532621 - L1MC5 LINE L1 -46 7915 7701 730 189 15 0 chr4 33756062 33756194 -150532468 - Tigger2 DNA MER2_type -10 2708 2575 3931 161 57 52 chr4 33756211 33757325 -150531337 + L1PA16 LINE L1 4984 6099 -67 234 0 0 0 chr4 33758068 33758094 -150530568 + (TA)n Simple_repeat Simple_repeat 2 27 0 189 0 0 0 chr4 33758093 33758114 -150530548 + (TG)n Simple_repeat Simple_repeat 2 22 0 * 204 67 0 0 chr4 33761436 33761466 -150527196 + (TA)n Simple_repeat Simple_repeat 2 31 0 283 311 54 0 chr4 33761846 33761920 -150526742 + L2 LINE L2 3232 3309 -4 323 299 65 92 chr4 33762519 33762780 -150525882 + MIR SINE MIR 3 256 -6 329 157 29 10 chr4 33763147 33763249 -150525413 + GA-rich Low_complexity Low_complexity 2 105 0 280 353 21 26 chr4 33764868 33765058 -150523604 - MIR SINE MIR -71 191 3 276 30 0 0 chr4 33765200 33765233 -150523429 + (CA)n Simple_repeat Simple_repeat 2 34 0 1263 177 15 57 chr4 33765249 33765514 -150523148 - AluJo SINE Alu -25 287 34 283 200 0 0 chr4 33765684 33765739 -150522923 + L1MA6 LINE L1 3098 3152 -4413 * 2249 232 51 3 chr4 33765735 33766347 -150522315 + L1MA6 LINE L1 3798 4438 -3127 5155 165 26 34 chr4 33766419 33768428 -150520234 + L1MA6 LINE L1 5725 7718 -1 22 35 0 0 chr4 33768494 33768523 -150520139 + AT_rich Low_complexity Low_complexity 1 29 0 1213 274 67 42 chr4 33768711 33769145 -150519517 + LTR40a LTR ERVL 70 514 -5 1980 164 0 0 chr4 33770124 33770422 -150518240 + AluSx SINE Alu 6 303 -9 21 36 0 0 chr4 33770734 33770762 -150517900 + AT_rich Low_complexity Low_complexity 1 28 0 438 20 0 0 chr4 33770839 33770890 -150517772 + (TG)n Simple_repeat Simple_repeat 2 52 0 27 49 0 0 chr4 33770923 33770964 -150517698 + AT_rich Low_complexity Low_complexity 1 41 0 963 216 11 82 chr4 33771701 33771983 -150516679 - MLT1A1 LTR MaLR -103 262 1 282 242 15 15 chr4 33773417 33773483 -150515179 - MER81 DNA DNA -44 70 5 1148 128 5 35 chr4 33774124 33774327 -150514335 + AluSx SINE Alu 1 197 -115 893 163 0 14 chr4 33774487 33774634 -150514028 + AluSg/x SINE Alu 131 275 -37 204 40 0 0 chr4 33774640 33774665 -150513997 + (TTAA)n Simple_repeat Simple_repeat 2 26 0 3410 179 18 5 chr4 33774683 33775313 -150513349 + L1MB1 LINE L1 5477 6114 -75 1251 204 129 67 chr4 33775326 33775729 -150512933 + MSTB1 LTR MaLR 5 432 0 805 174 14 82 chr4 33775734 33775941 -150512721 + L1MA10 LINE L1 6124 6316 -18 23 33 0 0 chr4 33775941 33775971 -150512691 + AT_rich Low_complexity Low_complexity 1 30 0 2024 128 10 0 chr4 33776876 33777173 -150511489 - AluSx SINE Alu -12 300 1 25 51 0 0 chr4 33777240 33777279 -150511383 + AT_rich Low_complexity Low_complexity 1 39 0 1448 207 87 7 chr4 33777279 33777588 -150511074 + MER2 DNA MER2_type 2 335 -10 216 0 0 0 chr4 33778801 33778825 -150509837 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 370 292 29 53 chr4 33779774 33779841 -150508821 + MLT1J LTR MaLR 1 68 -443 1172 254 104 29 chr4 33779841 33780322 -150508340 + MLT2B1 LTR ERVL 2 518 -2 370 292 29 53 chr4 33780322 33780425 -150508237 + MLT1J LTR MaLR 68 167 -344 183 80 0 0 chr4 33781121 33781146 -150507516 + (TGAA)n Simple_repeat Simple_repeat 4 28 0 360 43 0 0 chr4 33781376 33781422 -150507240 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 23 0 0 0 chr4 33782028 33782051 -150506611 + AT_rich Low_complexity Low_complexity 1 23 0 323 313 33 20 chr4 33782378 33782528 -150506134 + MLT1I LTR MaLR 15 166 -243 929 211 88 32 chr4 33782677 33782715 -150505947 - MSTA LTR MaLR 0 428 394 2380 63 0 0 chr4 33782715 33783016 -150505646 + AluY SINE Alu 1 301 -10 929 211 88 32 chr4 33783016 33783228 -150505434 - MSTA LTR MaLR -34 394 164 2331 123 22 3 chr4 33783638 33783995 -150504667 - THE1B LTR MaLR 0 364 1 237 361 83 37 chr4 33784207 33784315 -150504347 - L2 LINE L2 -4 3268 3156 1529 200 50 9 chr4 33784885 33785348 -150503314 - LTR53 LTR ERVL -12 507 1 193 257 50 59 chr4 33786073 33786174 -150502488 - L2 LINE L2 -523 2791 2692 1910 155 0 7 chr4 33786577 33786881 -150501781 - AluSx SINE Alu -10 302 1 1922 165 129 5 chr4 33788065 33788446 -150500216 - MSTA LTR MaLR 0 428 1 332 325 57 45 chr4 33788528 33788685 -150499977 - MLT1K LTR MaLR -368 220 62 22 0 0 0 chr4 33788946 33788968 -150499694 + AT_rich Low_complexity Low_complexity 1 22 0 895 293 44 20 chr4 33788968 33789471 -150499191 + L2 LINE L2 2770 3280 -33 186 103 0 0 chr4 33789528 33789557 -150499105 + (TGAA)n Simple_repeat Simple_repeat 2 30 0 1854 160 10 0 chr4 33789658 33789965 -150498697 + AluSx SINE Alu 1 310 -2 2172 144 3 29 chr4 33791819 33792193 -150496469 - THE1B LTR MaLR 0 364 1 2312 236 8 8 chr4 33792324 33792844 -150495818 - MLT2B1 LTR ERVL 0 520 1 464 324 11 16 chr4 33794048 33794230 -150494432 + MIR SINE MIR 80 260 -2 1475 256 124 4 chr4 33794528 33794978 -150493684 - MLT1D LTR MaLR 0 505 2 891 278 48 11 chr4 33795531 33795804 -150492858 - LTR67 LTR ERVL -2 555 273 231 300 36 55 chr4 33796775 33796885 -150491777 + MIR SINE MIR 86 193 -69 1541 214 63 24 chr4 33797271 33797650 -150491012 - MSTD LTR MaLR -2 394 1 28 48 0 0 chr4 33797894 33797936 -150490726 + AT_rich Low_complexity Low_complexity 1 42 0 23 68 0 0 chr4 33798016 33798060 -150490602 + AT_rich Low_complexity Low_complexity 1 44 0 198 390 138 5 chr4 33798177 33798395 -150490267 + MIR SINE MIR 13 259 -3 29 0 0 0 chr4 33798397 33798426 -150490236 + AT_rich Low_complexity Low_complexity 1 29 0 345 320 22 31 chr4 33799135 33799362 -150489300 + GA-rich Low_complexity Low_complexity 1 225 0 269 194 0 28 chr4 33799614 33799686 -150488976 + (CATATA)n Simple_repeat Simple_repeat 3 72 0 23 33 0 0 chr4 33800231 33800261 -150488401 + AT_rich Low_complexity Low_complexity 1 30 0 250 371 28 28 chr4 33800441 33800584 -150488078 - MIR SINE MIR -115 147 5 2435 181 7 5 chr4 33802181 33802618 -150486044 - MER44D DNA MER2_type -36 569 77 22 56 0 0 chr4 33803216 33803252 -150485410 + AT_rich Low_complexity Low_complexity 1 36 0 1422 195 82 22 chr4 33803382 33803700 -150484962 - L1MC1 LINE L1 0 6333 5997 268 114 66 0 chr4 33803719 33803779 -150484883 - Alu SINE Alu -11 291 247 216 0 0 0 chr4 33803828 33803852 -150484810 + (TA)n Simple_repeat Simple_repeat 2 25 0 801 212 0 54 chr4 33803864 33804048 -150484614 - AluJb SINE Alu -30 282 109 831 172 89 17 chr4 33804161 33804341 -150484321 - L1MC1 LINE L1 -727 5606 5414 * 2128 230 77 4 chr4 33804327 33804848 -150483814 - L1MCa LINE L1 -5839 587 29 209 189 0 0 chr4 33805312 33805349 -150483313 + (TCTA)n Simple_repeat Simple_repeat 1 37 0 1313 215 85 74 chr4 33805796 33806257 -150482405 - MLT1C LTR MaLR 0 467 2 447 362 31 18 chr4 33807951 33808175 -150480487 + L2 LINE L2 2699 2925 -389 881 265 88 20 chr4 33808308 33808614 -150480048 + LTR16A1 LTR ERVL 109 435 -22 345 387 47 7 chr4 33808638 33808917 -150479745 + ERVL LTR ERVL 1 290 -4706 1345 246 86 25 chr4 33809017 33809412 -150479250 - LTR52 LTR ERVL 0 421 3 1332 364 45 35 chr4 33809468 33810236 -150478426 + ERVL LTR ERVL 477 1259 -3737 640 229 60 60 chr4 33810236 33810454 -150478208 - MER20 DNA MER1_type -1 218 1 1332 364 45 35 chr4 33810454 33810684 -150477978 + ERVL LTR ERVL 1259 1485 -3511 731 313 52 48 chr4 33810690 33811191 -150477471 + ERVL LTR ERVL 1589 2091 -2905 464 328 58 6 chr4 33811253 33811427 -150477235 + ERVL LTR ERVL 2225 2407 -3357 388 368 33 4 chr4 33811595 33811912 -150476750 + ERVL LTR ERVL 2446 2777 -2219 639 349 80 27 chr4 33812125 33812603 -150476059 + ERVL LTR ERVL 3055 3557 -2207 1277 169 9 0 chr4 33812771 33812984 -150475678 - AluSg/x SINE Alu -17 295 81 2372 119 14 3 chr4 33813083 33813443 -150475219 + THE1B LTR MaLR 1 364 0 8512 127 34 37 chr4 33813443 33814859 -150473803 + THE1B-int LTR MaLR 1 1411 -169 982 147 20 10 chr4 33815192 33815396 -150473266 + THE1B-int LTR MaLR 1375 1580 0 2401 120 0 11 chr4 33815396 33815762 -150472900 + THE1B LTR MaLR 1 362 -2 778 216 6 28 chr4 33815794 33815970 -150472692 - AluJo SINE Alu -16 296 125 370 283 14 0 chr4 33815975 33816113 -150472549 + ERVL LTR ERVL 3878 4017 -1747 412 267 60 84 chr4 33816919 33817204 -150471458 + LTR16A1 LTR ERVL 1 278 -179 1010 65 30 6 chr4 33817997 33818165 -150470497 + (GAAA)n Simple_repeat Simple_repeat 4 175 0 3095 158 19 23 chr4 33818711 33819331 -150469331 + L1MA7 LINE L1 5672 6289 -2 2358 237 36 26 chr4 33819647 33820251 -150468411 + MER90 LTR ERV1 1 610 -4 1535 84 21 8 chr4 33821539 33821776 -150466886 + L1PA5 LINE L1 5904 6143 -11 24 0 0 0 chr4 33821868 33821892 -150466770 + AT_rich Low_complexity Low_complexity 1 24 0 1560 194 15 56 chr4 33822451 33822792 -150465870 - MER7A DNA MER2_type -1 345 21 596 211 16 0 chr4 33822790 33822918 -150465744 + MER39 LTR ERV1 557 686 -21 * 378 0 0 0 chr4 33823143 33823185 -150465477 + (CA)n Simple_repeat Simple_repeat 2 43 0 685 294 76 61 chr4 33824127 33824171 -150464491 - L2 LINE L2 -27 3286 3244 2275 162 30 16 chr4 33824171 33824610 -150464052 + MER65A LTR ERV1 1 445 0 685 294 76 61 chr4 33824610 33825153 -150463509 - L2 LINE L2 -69 3244 2687 195 100 0 0 chr4 33825153 33825183 -150463479 + (TA)n Simple_repeat Simple_repeat 2 31 0 722 325 77 6 chr4 33825840 33826179 -150462483 - L2 LINE L2 -613 2701 2339 189 314 220 25 chr4 33826287 33826405 -150462257 - L2 LINE L2 0 3313 3173 383 356 151 28 chr4 33826697 33827129 -150461533 - L2 LINE L2 -466 2848 2364 254 279 0 0 chr4 33827736 33827804 -150460858 + A-rich Low_complexity Low_complexity 1 68 0 337 234 203 16 chr4 33829505 33829633 -150459029 + MLT1J LTR MaLR 33 184 -327 3409 266 40 45 chr4 33829680 33831128 -150457534 - L1MCb LINE L1 -4851 1194 3 297 323 24 16 chr4 33831323 33831447 -150457215 + MER5A DNA MER1_type 34 158 -31 291 200 0 47 chr4 33831944 33832029 -150456633 + GA-rich Low_complexity Low_complexity 3 83 0 282 143 0 0 chr4 33832253 33832302 -150456360 + (TG)n Simple_repeat Simple_repeat 2 50 0 1837 93 30 36 chr4 33832741 33833042 -150455620 - THE1C LTR MaLR -76 299 1 230 314 108 10 chr4 33833067 33833169 -150455493 - MLT1I LTR MaLR -197 212 101 398 271 77 45 chr4 33833291 33833538 -150455124 - L1ME LINE L1 -648 5516 5262 1465 172 35 56 chr4 33833709 33834028 -150454634 + AluJo SINE Alu 1 312 0 762 296 107 26 chr4 33834364 33835376 -150453286 - L1ME LINE L1 -1644 4502 3409 226 230 130 25 chr4 33835695 33835856 -150452806 - L1ME LINE L1 -3191 2955 2778 326 301 7 37 chr4 33835897 33836033 -150452629 + MER94 DNA DNA 1 132 -2 238 222 0 0 chr4 33836066 33836120 -150452542 - L1ME LINE L1 -3447 2699 2646 499 321 38 5 chr4 33836491 33836675 -150451987 + LTR33 LTR ERVL 32 221 -300 1478 173 21 25 chr4 33837282 33837588 -150451074 + AluJo SINE Alu 1 305 0 329 344 133 11 chr4 33838561 33838741 -150449921 + MIR3 SINE MIR 1 202 -6 230 258 75 69 chr4 33839171 33839330 -150449332 + MLT1J2 LTR MaLR 264 423 -27 241 216 420 0 chr4 33839885 33839973 -150448689 + L2 LINE L2 3181 3305 -8 224 30 30 0 chr4 33840445 33840478 -150448184 + (TG)n Simple_repeat Simple_repeat 2 35 0 1750 191 18 6 chr4 33840505 33840840 -150447822 - MER44D DNA MER2_type 0 609 1 498 305 12 6 chr4 33842380 33842544 -150446118 - MER69A DNA AcHobo -7 170 6 308 190 9 103 chr4 33843919 33844035 -150444627 - MLT1J1 LTR MaLR -321 125 21 295 245 32 21 chr4 33844069 33844163 -150444499 - MLT1G LTR MaLR 0 590 496 299 132 0 0 chr4 33844185 33844238 -150444424 - LTR19A LTR ERV1 0 486 434 303 307 38 46 chr4 33844398 33844636 -150444026 - L1MC5 LINE L1 -384 7577 7342 364 255 94 52 chr4 33844747 33845014 -150443648 - MLT1J LTR MaLR -2 509 232 310 143 0 0 chr4 33845314 33845363 -150443299 + MADE1 DNA Mariner 32 80 0 22 35 0 0 chr4 33845613 33845642 -150443020 + AT_rich Low_complexity Low_complexity 1 29 0 246 250 0 0 chr4 33846553 33846613 -150442049 + (TA)n Simple_repeat Simple_repeat 2 61 0 317 194 52 49 chr4 33846724 33847087 -150441575 + L1MA9 LINE L1 5341 5701 -611 2009 112 11 3 chr4 33847087 33847374 -150441288 - AluSc SINE Alu -20 289 1 317 194 52 49 chr4 33847374 33847830 -150440832 + L1MA9 LINE L1 5701 6276 -36 2349 74 0 13 chr4 33848657 33848969 -150439693 - AluY SINE Alu -3 308 1 206 125 0 25 chr4 33849750 33849790 -150438872 + (TA)n Simple_repeat Simple_repeat 2 40 0 270 233 0 27 chr4 33849820 33849893 -150438769 + (TA)n Simple_repeat Simple_repeat 1 71 0 23 33 0 0 chr4 33850176 33850206 -150438456 + AT_rich Low_complexity Low_complexity 1 30 0 189 0 0 0 chr4 33851461 33851482 -150437180 + (T)n Simple_repeat Simple_repeat 1 21 0 21 57 0 0 chr4 33852179 33852214 -150436448 + AT_rich Low_complexity Low_complexity 1 35 0 2032 178 90 2 chr4 33852222 33852644 -150436018 - L1PB4 LINE L1 -17 6139 5681 616 206 67 67 chr4 33852893 33853073 -150435589 + MLT1D LTR MaLR 12 191 -314 420 195 0 0 chr4 33853331 33853413 -150435249 - AluJ/FRAM SINE Alu -10 302 221 1847 173 3 3 chr4 33853551 33853880 -150434782 + L1PA15 LINE L1 5835 6163 -2 992 222 28 4 chr4 33854102 33854350 -150434312 + MER63 DNA MER1_type 809 1062 0 30 97 0 0 chr4 33854558 33854651 -150434011 + AT_rich Low_complexity Low_complexity 1 93 0 1317 259 37 12 chr4 33855170 33855572 -150433090 - L1ME1 LINE L1 -207 5959 5548 2973 90 5 0 chr4 33855575 33855985 -150432677 - L1PA7 LINE L1 0 6154 5743 6195 94 2 1 chr4 33855985 33856858 -150431804 + L1P LINE L1 1652 2525 -3621 265 301 27 6 chr4 33856855 33856973 -150431689 - L1ME1 LINE L1 -607 5557 5436 * 1306 258 164 48 chr4 33857080 33857473 -150431189 - L1ME1 LINE L1 -735 5427 5081 276 30 0 0 chr4 33857473 33857506 -150431156 + (TG)n Simple_repeat Simple_repeat 2 34 0 1306 258 164 48 chr4 33857506 33858097 -150430565 - L1ME1 LINE L1 -1081 5081 4324 23 86 0 0 chr4 33858225 33858283 -150430379 + AT_rich Low_complexity Low_complexity 1 58 0 1109 184 81 16 chr4 33858894 33859153 -150429509 + MER39 LTR ERV1 3 234 -419 1338 104 56 30 chr4 33859154 33859385 -150429277 + MER39 LTR ERV1 340 576 -131 933 247 83 106 chr4 33909400 33909927 -150378735 + MLT1E2 LTR MaLR 15 529 -97 240 86 0 0 chr4 33910051 33910086 -150378576 + (TG)n Simple_repeat Simple_repeat 2 36 0 1313 250 67 45 chr4 33910258 33910722 -150377940 - MLT1D LTR MaLR -27 478 5 934 331 22 12 chr4 33911596 33911945 -150376717 + MLT1G LTR MaLR 212 584 -11 729 147 62 0 chr4 33912436 33912565 -150376097 + FRAM SINE Alu 28 164 -12 26 0 0 0 chr4 33912693 33912719 -150375943 + AT_rich Low_complexity Low_complexity 1 26 0 200 372 124 13 chr4 33912849 33913083 -150375579 + L2 LINE L2 2970 3229 -84 22 0 0 0 chr4 33914111 33914133 -150374529 + AT_rich Low_complexity Low_complexity 1 22 0 33 0 0 0 chr4 33914234 33914267 -150374395 + AT_rich Low_complexity Low_complexity 1 33 0 362 254 17 51 chr4 33914615 33914733 -150373929 + MIR SINE MIR 133 246 -16 23 20 8 0 chr4 33915248 33915318 -150373344 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr4 33916742 33916765 -150371897 + AT_rich Low_complexity Low_complexity 1 23 0 187 316 110 15 chr4 33917043 33917179 -150371483 + MIR SINE MIR 2 150 -112 392 300 75 50 chr4 33917720 33917880 -150370782 - L2 LINE L2 0 3272 3109 731 253 50 84 chr4 33918277 33918637 -150370025 - L1ME1 LINE L1 -36 6130 5780 1209 83 30 0 chr4 33919285 33919453 -150369209 - L1PA7 LINE L1 -1 6153 5981 7501 85 0 23 chr4 33919453 33920960 -150367702 - L1PA7 LINE L1 -398 5756 4290 2145 116 3 3 chr4 33921321 33921613 -150367049 + AluSc SINE Alu 1 292 -17 188 306 41 0 chr4 33921855 33921904 -150366758 - L2 LINE L2 -269 3044 2994 1036 254 93 48 chr4 33924918 33925448 -150363214 - MLT1F1 LTR MaLR 0 567 13 192 356 75 29 chr4 33926794 33926968 -150361694 + MER5A DNA MER1_type 7 188 -1 1882 159 122 8 chr4 33927039 33927423 -150361239 - MSTA LTR MaLR 0 428 1 408 279 155 18 chr4 33927512 33927731 -150360931 - MIR SINE MIR -12 250 2 271 302 36 107 chr4 33928482 33928790 -150359872 + MLT1L LTR MaLR 167 452 -163 29 0 0 0 chr4 33928913 33928942 -150359720 + AT_rich Low_complexity Low_complexity 1 29 0 218 49 0 73 chr4 33929831 33929872 -150358790 + (A)n Simple_repeat Simple_repeat 1 38 0 22 35 0 0 chr4 33929976 33930005 -150358657 + AT_rich Low_complexity Low_complexity 1 29 0 2169 128 0 0 chr4 33931417 33931713 -150356949 + AluSg SINE Alu 1 296 -14 929 203 72 56 chr4 33932084 33932335 -150356327 - LTR8A LTR ERV1 0 727 473 325 167 97 14 chr4 33932438 33932510 -150356152 - LTR8 LTR ERV1 -613 78 1 1981 141 0 3 chr4 33932630 33932961 -150355701 - AluSx SINE Alu 0 312 1 23 33 0 0 chr4 33933291 33933321 -150355341 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr4 33934362 33934392 -150354270 + AT_rich Low_complexity Low_complexity 1 30 0 242 294 199 35 chr4 33934505 33934706 -150353956 + MIR SINE MIR 23 256 -6 531 270 131 36 chr4 33934783 33935005 -150353657 - MIR SINE MIR -12 250 8 326 226 78 9 chr4 33935290 33935405 -150353257 - L1MD3 LINE L1 -10 7985 7863 1961 139 152 11 chr4 33935560 33935935 -150352727 + MSTA LTR MaLR 1 428 0 2077 121 7 0 chr4 33935948 33936237 -150352425 + AluSx SINE Alu 3 293 -19 1610 238 87 2 chr4 33936254 33936703 -150351959 - L1MD3 LINE L1 -160 7835 7349 405 204 10 13 chr4 33936705 33936824 -150351838 - L1MD3 LINE L1 -847 7015 6849 838 272 145 53 chr4 33937870 33938469 -150350193 + MLT1E1 LTR MaLR 1 654 0 227 200 56 56 chr4 33938770 33938860 -150349802 - MLT1J1 LTR MaLR -286 160 71 189 269 77 0 chr4 33938931 33938983 -150349679 - L2 LINE L2 -68 3245 3190 874 347 69 27 chr4 33940046 33940599 -150348063 + L1M2c LINE L1 7 582 -6207 2145 247 24 28 chr4 33941100 33941772 -150346890 + L1M2c LINE L1 1481 2149 -4640 * 2749 117 22 0 chr4 33941769 33942179 -150346483 + L1MA6 LINE L1 5519 5937 -363 225 0 0 0 chr4 33942179 33942204 -150346458 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 297 0 0 0 chr4 33942203 33942236 -150346426 + (GA)n Simple_repeat Simple_repeat 2 34 0 213 108 0 0 chr4 33942647 33942684 -150345978 + (TA)n Simple_repeat Simple_repeat 2 38 0 961 242 74 17 chr4 33942735 33943018 -150345644 + L1MA6 LINE L1 5980 6282 -18 816 118 0 15 chr4 33943018 33943154 -150345508 + L1PB1 LINE L1 6018 6151 0 961 242 74 17 chr4 33943154 33943167 -150345495 + L1MA6 LINE L1 6282 6293 -7 28 61 0 0 chr4 33943210 33943259 -150345403 + AT_rich Low_complexity Low_complexity 1 49 0 24 0 0 0 chr4 33943456 33943480 -150345182 + AT_rich Low_complexity Low_complexity 1 24 0 1999 130 53 28 chr4 33946084 33946439 -150342223 - THE1B LTR MaLR 0 364 1 10298 159 40 13 chr4 33946993 33947171 -150341491 + Tigger1 DNA MER2_type 1 173 -2245 198 0 0 0 chr4 33947171 33947193 -150341469 + (TTA)n Simple_repeat Simple_repeat 3 24 0 10298 159 40 13 chr4 33947193 33948867 -150339795 + Tigger1 DNA MER2_type 173 1903 -515 267 333 31 0 chr4 33948867 33948963 -150339699 + MER5A DNA MER1_type 14 112 -77 643 302 79 34 chr4 33949127 33949418 -150339244 - L2 LINE L2 -43 3270 2967 477 349 107 5 chr4 33949527 33949742 -150338920 - MIR SINE MIR -18 244 8 211 341 8 45 chr4 33949956 33950088 -150338574 - MER5A DNA MER1_type -28 161 35 194 313 94 42 chr4 33950015 33950111 -150338551 + MER5A DNA MER1_type 88 188 -1 * 21 0 0 0 chr4 33951167 33951188 -150337474 + AT_rich Low_complexity Low_complexity 1 21 0 265 340 58 0 chr4 33953829 33953932 -150334730 + L2 LINE L2 3163 3271 -1 23 0 0 0 chr4 33954193 33954216 -150334446 + AT_rich Low_complexity Low_complexity 1 23 0 222 327 53 44 chr4 33955240 33955353 -150333309 + L3 LINE CR1 1429 1542 -35 201 39 0 0 chr4 33956218 33956244 -150332418 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2244 57 0 4 chr4 33957192 33957505 -150331157 + AluSc SINE Alu 1 312 0 368 227 13 0 chr4 33957546 33957621 -150331041 - LTR16C LTR ERVL -4 487 412 27 0 0 0 chr4 33958212 33958239 -150330423 + AT_rich Low_complexity Low_complexity 1 27 0 2096 136 3 0 chr4 33958250 33958552 -150330110 + AluSx SINE Alu 1 303 -9 22 70 0 0 chr4 33958593 33958636 -150330026 + AT_rich Low_complexity Low_complexity 1 43 0 27 29 0 0 chr4 33958896 33958930 -150329732 + AT_rich Low_complexity Low_complexity 1 34 0 340 328 9 0 chr4 33958972 33959088 -150329574 - MIR SINE MIR 0 262 146 321 342 102 30 chr4 33959143 33959535 -150329127 + L2 LINE L2 2749 3154 -159 733 277 9 48 chr4 33959565 33959796 -150328866 + MER58A DNA MER1_type 3 224 0 614 306 65 46 chr4 33961674 33962046 -150326616 + L2 LINE L2 2917 3295 -18 22 0 0 0 chr4 33962172 33962194 -150326468 + AT_rich Low_complexity Low_complexity 1 22 0 1793 83 0 42 chr4 33962339 33962604 -150326058 + L1PA15 LINE L1 5904 6157 -8 1608 181 7 10 chr4 33962941 33963240 -150325422 - AluJo SINE Alu -14 298 1 572 294 36 44 chr4 33963615 33963863 -150324799 - L2 LINE L2 0 3313 3068 240 403 13 27 chr4 33963900 33964049 -150324613 - L2 LINE L2 -3133 181 35 572 133 8 0 chr4 33964665 33964785 -150323877 + (TA)n Simple_repeat Simple_repeat 2 122 0 1877 178 2 63 chr4 33965072 33965487 -150323175 - MLT1B LTR MaLR 0 390 1 323 304 108 6 chr4 33965562 33965720 -150322942 - MIR SINE MIR -11 251 78 25 31 0 0 chr4 33966117 33966149 -150322513 + AT_rich Low_complexity Low_complexity 1 32 0 228 214 0 0 chr4 33966204 33966246 -150322416 + GA-rich Low_complexity Low_complexity 2 43 0 21 36 0 0 chr4 33968169 33968197 -150320465 + AT_rich Low_complexity Low_complexity 1 28 0 1576 254 22 51 chr4 33968565 33969152 -150319510 - L1ME1 LINE L1 -5 6161 5592 432 250 15 0 chr4 33969157 33969289 -150319373 - L1MA10 LINE L1 -21 6313 6180 235 227 15 15 chr4 33969295 33969361 -150319301 + (ATG)n Simple_repeat Simple_repeat 2 67 0 9095 205 33 38 chr4 33969368 33971770 -150316892 - L1MB1 LINE L1 -26 6163 3750 1750 184 47 11 chr4 33971770 33972129 -150316533 - THE1C LTR MaLR -3 372 1 9095 205 33 38 chr4 33972129 33972362 -150316300 - L1MB1 LINE L1 -2439 3750 3517 1459 192 35 21 chr4 33972362 33972648 -150316014 + AluJo SINE Alu 1 290 -22 9095 205 33 38 chr4 33972648 33973148 -150315514 - L1MB1 LINE L1 -2672 3517 3041 274 355 39 55 chr4 33973286 33973542 -150315120 - MIR SINE MIR 0 262 11 25 31 0 0 chr4 33973581 33973613 -150315049 + AT_rich Low_complexity Low_complexity 1 32 0 1364 194 35 1 chr4 33973805 33974129 -150314533 - MLT2C2 LTR ERVL -48 349 1 1333 120 34 0 chr4 33975025 33975233 -150313429 + L1PA10 LINE L1 5951 6165 -3 216 196 143 0 chr4 33975347 33975403 -150313259 + MIR SINE MIR 94 157 -105 21 57 0 0 chr4 33976353 33976388 -150312274 + AT_rich Low_complexity Low_complexity 1 35 0 618 307 94 12 chr4 33977141 33977395 -150311267 + L2 LINE L2 2464 2738 -576 394 346 49 45 chr4 33977409 33977675 -150310987 + L2 LINE L2 3047 3313 0 407 340 90 9 chr4 33977817 33978029 -150310633 - MIR SINE MIR -11 251 23 387 98 0 0 chr4 33978685 33978746 -150309916 + (TG)n Simple_repeat Simple_repeat 1 61 0 261 0 0 0 chr4 33979236 33979265 -150309397 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 188 290 110 50 chr4 33979944 33980044 -150308618 - L2 LINE L2 -276 3037 2932 21 82 0 0 chr4 33980305 33980354 -150308308 + AT_rich Low_complexity Low_complexity 1 49 0 321 205 391 0 chr4 33980523 33980743 -150307919 + L1MD3 LINE L1 6959 7097 -688 454 281 9 0 chr4 33980743 33980857 -150307805 + MLT1F1 LTR MaLR 17 131 -436 1989 240 32 14 chr4 33980859 33981418 -150307244 + L1MD3 LINE L1 7410 7978 -17 360 341 50 17 chr4 33981671 33981850 -150306812 + MLT1E LTR MaLR 1 185 -408 295 167 14 14 chr4 33981863 33981935 -150306727 + CT-rich Low_complexity Low_complexity 6 77 0 24 53 0 0 chr4 33982549 33982587 -150306075 + AT_rich Low_complexity Low_complexity 1 38 0 555 189 69 62 chr4 33983992 33984189 -150304473 + MIR SINE MIR 1 200 -62 21 57 0 0 chr4 33984246 33984281 -150304381 + AT_rich Low_complexity Low_complexity 1 35 0 306 267 78 35 chr4 33984378 33984494 -150304168 - L1ME4a LINE L1 -233 5888 5768 248 305 141 8 chr4 33984514 33984642 -150304020 + MIR SINE MIR 118 262 0 21 0 0 0 chr4 33985185 33985206 -150303456 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 33985521 33985542 -150303120 + AT_rich Low_complexity Low_complexity 1 21 0 245 311 74 27 chr4 33986194 33986222 -150302440 - MLT1K LTR MaLR -164 424 399 2247 101 0 0 chr4 33986222 33986519 -150302143 - AluSg1 SINE Alu -12 297 1 245 311 74 27 chr4 33986519 33986638 -150302024 - MLT1K LTR MaLR -189 399 270 823 125 7 28 chr4 33986764 33986908 -150301754 + MLT1A1 LTR MaLR 11 151 -214 969 256 133 67 chr4 33986962 33988009 -150300653 + L1M4 LINE L1 4492 5607 -577 1585 128 15 4 chr4 33988009 33988275 -150300387 + L1PA13 LINE L1 5888 6156 -7 622 284 48 14 chr4 33988351 33988702 -150299960 + L1ME3A LINE L1 5469 5881 -289 218 169 17 34 chr4 33988853 33988912 -150299750 + CT-rich Low_complexity Low_complexity 2 59 0 415 194 58 22 chr4 33989028 33989167 -150299495 - L1MC2 LINE L1 -1 6343 6200 1407 181 10 51 chr4 33989170 33989463 -150299199 + MSTB LTR MaLR 3 283 -143 644 179 0 8 chr4 33989463 33989580 -150299082 + AluJ SINE Alu 1 116 -186 496 195 0 0 chr4 33989580 33989667 -150298995 + AluJ SINE Alu 168 254 -58 5091 46 3 3 chr4 33989801 33990434 -150298228 + L1PA5 LINE L1 5517 6149 -5 224 317 40 29 chr4 33991445 33991576 -150297086 - MIR SINE MIR -65 143 28 376 341 7 7 chr4 33991599 33991737 -150296925 - MIR SINE MIR -10 252 115 21 36 0 0 chr4 33992012 33992040 -150296622 + AT_rich Low_complexity Low_complexity 1 28 0 251 326 0 21 chr4 33992135 33992230 -150296432 + MER5A DNA MER1_type 11 103 -86 22 35 0 0 chr4 33992351 33992380 -150296282 + AT_rich Low_complexity Low_complexity 1 29 0 2374 67 0 10 chr4 33992735 33993047 -150295615 - AluY SINE Alu -2 309 1 22 0 0 0 chr4 33995302 33995324 -150293338 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr4 33996010 33996035 -150292627 + AT_rich Low_complexity Low_complexity 1 25 0 213 319 0 53 chr4 33996538 33996632 -150292030 + MIR SINE MIR 162 250 -12 67 42 0 0 chr4 33997078 33997173 -150291489 + AT_rich Low_complexity Low_complexity 1 95 0 265 331 53 30 chr4 33997671 33997804 -150290858 + MIR SINE MIR 1 136 -126 31 26 0 0 chr4 33998136 33998174 -150290488 + AT_rich Low_complexity Low_complexity 1 38 0 22 70 0 0 chr4 33998469 33998512 -150290150 + AT_rich Low_complexity Low_complexity 1 43 0 264 234 16 0 chr4 33998641 33998705 -150289957 + CT-rich Low_complexity Low_complexity 4 68 0 383 340 28 28 chr4 33998706 33998918 -150289744 - HAL1b LINE L1 -861 487 276 22 0 0 0 chr4 33999412 33999434 -150289228 + AT_rich Low_complexity Low_complexity 1 22 0 256 254 45 0 chr4 33999742 33999809 -150288853 - HAL1 LINE L1 -829 1678 1609 329 275 94 7 chr4 33999811 33999960 -150288702 - MLT1I LTR MaLR 0 590 429 2074 144 0 0 chr4 34001117 34001429 -150287233 + AluSx SINE Alu 1 312 0 30302 117 13 62 chr4 34001968 34008435 -150280227 + L1PA7 LINE L1 12 6143 -11 198 0 0 0 chr4 34008438 34008460 -150280202 + (TTAAA)n Simple_repeat Simple_repeat 4 25 0 988 312 73 38 chr4 34008527 34009078 -150279584 + L2 LINE L2 2381 2950 -364 1375 201 17 24 chr4 34010723 34011017 -150277645 + AluJb SINE Alu 3 294 -18 222 150 0 0 chr4 34011369 34011409 -150277253 + (ATG)n Simple_repeat Simple_repeat 2 41 0 446 273 0 0 chr4 34011414 34011513 -150277149 - MLT1E LTR MaLR -434 159 61 697 217 0 0 chr4 34012193 34012331 -150276331 - AluJb SINE Alu -19 293 156 1382 254 83 48 chr4 34013090 34013822 -150274840 + Zaphod DNA AcHobo 217 974 -3057 985 252 122 3 chr4 34013852 34014221 -150274441 + Zaphod DNA AcHobo 3611 4023 -8 465 278 133 44 chr4 34015784 34015964 -150272698 - MIR SINE MIR -27 235 40 208 237 0 0 chr4 34015975 34016013 -150272649 + polypurine Low_complexity Low_complexity 5 42 0 225 372 74 25 chr4 34016338 34016459 -150272203 + L2 LINE L2 3134 3260 -12 22 0 0 0 chr4 34016470 34016492 -150272170 + AT_rich Low_complexity Low_complexity 1 22 0 322 315 0 37 chr4 34016579 34016687 -150271975 - L2 LINE L2 0 3272 3169 781 293 34 16 chr4 34017662 34017983 -150270679 + L1ME4a LINE L1 5583 5909 -212 391 305 50 47 chr4 34018094 34018472 -150270190 - MLT1I LTR MaLR -12 397 22 1044 279 33 89 chr4 34018831 34019405 -150269257 - MER34 LTR ERV1 0 542 1 709 227 0 0 chr4 34019522 34019654 -150269008 + FLAM_C SINE Alu 2 133 0 426 115 39 0 chr4 34019662 34019740 -150268922 + AluS SINE Alu 232 312 0 781 191 0 0 chr4 34019961 34020092 -150268570 + FLAM_A SINE Alu 6 136 -6 209 54 0 89 chr4 34020117 34020173 -150268489 + (TAA)n Simple_repeat Simple_repeat 1 51 0 435 307 199 21 chr4 34020400 34020664 -150267998 + L2 LINE L2 2688 3000 -313 225 122 24 0 chr4 34020931 34020972 -150267690 - L1PBa LINE L1 -4410 2453 2412 425 303 16 0 chr4 34021241 34021363 -150267299 + MER58A DNA MER1_type 1 124 0 386 264 22 0 chr4 34021402 34021493 -150267169 + MER58A DNA MER1_type 127 219 -5 189 0 0 0 chr4 34021541 34021562 -150267100 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 207 191 48 0 chr4 34021710 34021752 -150266910 + L2 LINE L2 3219 3262 -10 742 237 51 0 chr4 34022812 34022989 -150265673 - MER5A DNA MER1_type -3 186 1 809 264 57 4 chr4 34023689 34023916 -150264746 + MER8 DNA MER2_type 1 239 0 1891 141 17 0 chr4 34024389 34024687 -150263975 + AluSx SINE Alu 4 306 -6 205 83 0 28 chr4 34024944 34024980 -150263682 + (CAAAA)n Simple_repeat Simple_repeat 4 38 0 24 53 0 0 chr4 34025024 34025062 -150263600 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr4 34025602 34025630 -150263032 + AT_rich Low_complexity Low_complexity 1 28 0 587 241 5 98 chr4 34025709 34025785 -150262877 + MER20 DNA MER1_type 24 106 -113 2446 84 6 0 chr4 34025785 34026096 -150262566 + AluSp SINE Alu 1 313 0 587 241 5 98 chr4 34026096 34026222 -150262440 + MER20 DNA MER1_type 106 207 -12 342 111 12 25 chr4 34027269 34027350 -150261312 + (TA)n Simple_repeat Simple_repeat 1 80 0 226 178 0 0 chr4 34027374 34027419 -150261243 - LTR66 LTR ERVL -172 438 394 189 154 0 0 chr4 34027419 34027458 -150261204 + (CATA)n Simple_repeat Simple_repeat 2 40 0 198 0 0 0 chr4 34027533 34027555 -150261107 + (TG)n Simple_repeat Simple_repeat 1 22 0 279 189 22 22 chr4 34027574 34027664 -150260998 + (TATAA)n Simple_repeat Simple_repeat 2 91 0 205 135 56 0 chr4 34027664 34027753 -150260909 + (TA)n Simple_repeat Simple_repeat 1 94 0 27 0 0 0 chr4 34027831 34027858 -150260804 + AT_rich Low_complexity Low_complexity 1 27 0 1815 138 11 0 chr4 34027880 34028148 -150260514 + AluSx SINE Alu 27 297 -15 2033 140 39 39 chr4 34028157 34028521 -150260141 + THE1B LTR MaLR 1 364 0 9098 120 81 36 chr4 34028521 34030033 -150258629 + THE1B-int LTR MaLR 1 1580 0 1956 126 72 31 chr4 34030033 34030382 -150258280 + THE1B LTR MaLR 1 363 -1 1415 208 15 0 chr4 34030383 34030657 -150258005 - AluJb SINE Alu -34 278 1 1219 144 0 16 chr4 34030869 34031085 -150257577 - AluSg/x SINE Alu 0 313 101 1527 231 35 3 chr4 34031597 34031965 -150256697 + MLT2C2 LTR ERVL 5 384 -80 228 174 0 0 chr4 34032013 34032059 -150256603 - LTR66 LTR ERVL -171 439 394 213 39 0 0 chr4 34032083 34032109 -150256553 + (GA)n Simple_repeat Simple_repeat 1 26 0 265 103 0 0 chr4 34032116 34032155 -150256507 + MLT2C2 LTR ERVL 359 397 0 1280 311 54 69 chr4 34034292 34035279 -150253383 - L2 LINE L2 0 3313 2328 23 33 0 0 chr4 34035295 34035325 -150253337 + AT_rich Low_complexity Low_complexity 1 30 0 1634 115 22 103 chr4 34035328 34035671 -150252991 + AluYb8 SINE Alu 1 318 0 592 359 48 19 chr4 34035875 34036246 -150252416 + LTR16A LTR ERVL 52 433 -17 225 279 33 0 chr4 34037209 34037270 -150251392 + MLT1D LTR MaLR 5 67 -438 296 220 0 22 chr4 34037272 34037363 -150251299 - L1MC4 LINE L1 -1339 6703 6615 231 283 0 22 chr4 34037284 34037376 -150251286 + L1MC4 LINE L1 6614 6703 -1339 * 309 153 0 0 chr4 34037379 34037477 -150251185 + (TA)n Simple_repeat Simple_repeat 1 98 0 1184 289 51 12 chr4 34037486 34037895 -150250767 + MLT1D LTR MaLR 81 505 0 25 31 0 0 chr4 34037981 34038013 -150250649 + AT_rich Low_complexity Low_complexity 1 32 0 5158 159 34 4 chr4 34038016 34039225 -150249437 - L1PA16 LINE L1 -9 6157 4912 327 255 7 28 chr4 34039220 34039365 -150249297 + L1P LINE L1 3022 3163 -2983 * 262 203 0 40 chr4 34039429 34039503 -150249159 + MER57A-int LTR ERV1 857 927 -4196 317 172 0 0 chr4 34039538 34039596 -150249066 + MER34C LTR ERV1 155 212 -373 431 209 46 38 chr4 34039760 34039920 -150248742 + MER57A-int LTR ERV1 1096 1199 -3672 286 220 0 77 chr4 34039906 34039997 -150248665 + MER57A-int LTR ERV1 2721 2804 -3142 * 442 217 22 0 chr4 34040077 34040169 -150248493 + MER57A-int LTR ERV1 3247 3340 -2991 287 193 0 45 chr4 34040418 34040506 -150248156 + MER57A-int LTR ERV1 1838 1921 -3202 189 211 0 0 chr4 34040694 34040746 -150247916 + A-rich Low_complexity Low_complexity 1 52 0 5230 197 50 56 chr4 34040953 34043598 -150245064 + MER57A-int LTR ERV1 4325 7145 -392 562 169 31 39 chr4 34043598 34043728 -150244934 + LTR54B LTR ERV1 3 131 -367 496 95 0 14 chr4 34043770 34043844 -150244818 + MER57A-int LTR ERV1 7222 7294 -243 1892 154 16 3 chr4 34043870 34044182 -150244480 + MER57A-int LTR ERV1 7222 7537 0 2389 146 15 2 chr4 34044182 34044580 -150244082 + MER57A LTR ERV1 1 403 0 598 299 86 0 chr4 34044583 34044804 -150243858 - HsTC2 DNA Tc2 -394 1504 1265 268 296 41 0 chr4 34044840 34044938 -150243724 - HsTC2 DNA Tc2 -1796 102 1 27 0 0 0 chr4 34044938 34044965 -150243697 + AT_rich Low_complexity Low_complexity 1 27 0 30 0 0 0 chr4 34046103 34046133 -150242529 + AT_rich Low_complexity Low_complexity 1 30 0 1019 165 28 0 chr4 34046135 34046317 -150242345 - L1PA16 LINE L1 -11 6155 5969 1423 233 61 42 chr4 34046573 34047107 -150241555 + MER67C LTR ERV1 4 511 -3 229 148 49 16 chr4 34048306 34048367 -150240295 + (TA)n Simple_repeat Simple_repeat 1 63 0 219 69 0 0 chr4 34049750 34049779 -150238883 + (TAA)n Simple_repeat Simple_repeat 1 29 0 2162 156 5 32 chr4 34049932 34050305 -150238357 - THE1B LTR MaLR -1 363 1 282 320 206 36 chr4 34051218 34051524 -150237138 - L2 LINE L2 -10 3303 2946 595 225 67 17 chr4 34051529 34051707 -150236955 - L1M4 LINE L1 -1959 4391 4205 331 111 16 16 chr4 34051726 34051789 -150236873 + (TTCC)n Simple_repeat Simple_repeat 1 63 0 971 97 29 11 chr4 34051801 34051976 -150236686 + CT-rich Low_complexity Low_complexity 2 179 0 533 319 65 9 chr4 34051990 34052219 -150236443 - L1M4 LINE L1 -4935 1346 1105 1382 179 32 47 chr4 34052300 34052640 -150236022 + L1MA8 LINE L1 5955 6289 -2 324 267 34 27 chr4 34054389 34054535 -150234127 - L1MEc LINE L1 -4286 2110 1964 * 852 103 0 0 chr4 34054534 34054660 -150234002 - L1PA7 LINE L1 -1318 4828 4703 6722 63 7 6 chr4 34054661 34055981 -150232681 + L1PA7 LINE L1 4833 6154 0 2730 287 60 59 chr4 34056006 34057205 -150231457 - L1MEc LINE L1 -4421 1975 773 303 28 0 0 chr4 34057205 34057241 -150231421 + (TG)n Simple_repeat Simple_repeat 1 36 0 2730 287 60 59 chr4 34057241 34057864 -150230798 - L1MEc LINE L1 -5623 773 152 * 5845 134 26 43 chr4 34057854 34059015 -150229647 + L1MA3 LINE L1 5163 6305 0 1775 235 36 35 chr4 34060304 34060797 -150227865 + MLT1D LTR MaLR 1 494 -11 26 74 0 0 chr4 34062130 34062184 -150226478 + AT_rich Low_complexity Low_complexity 1 54 0 244 291 109 117 chr4 34062892 34063287 -150225375 - L2 LINE L2 0 3313 2922 184 305 25 59 chr4 34063556 34063674 -150224988 + MIR SINE MIR 34 147 -115 328 304 73 16 chr4 34064692 34064883 -150223779 + MLT1J2 LTR MaLR 26 227 -223 3713 52 8 0 chr4 34065009 34065485 -150223177 + L1PA7 LINE L1 5675 6154 0 1776 163 97 83 chr4 34065866 34066362 -150222300 - MLT1D LTR MaLR 0 505 3 207 0 0 0 chr4 34066958 34066981 -150221681 + (T)n Simple_repeat Simple_repeat 1 23 0 189 0 0 0 chr4 34067608 34067629 -150221033 + (CAAA)n Simple_repeat Simple_repeat 3 23 0 1744 176 3 0 chr4 34068397 34068687 -150219975 + AluJb SINE Alu 9 299 -13 272 230 24 32 chr4 34069354 34069480 -150219182 + (TA)n Simple_repeat Simple_repeat 1 125 0 558 327 82 18 chr4 34069729 34070301 -150218361 - L1ME3A LINE L1 -235 5935 5327 255 208 132 47 chr4 34070561 34070667 -150217995 - L1 LINE L1 -1149 4997 4883 451 345 82 16 chr4 34070774 34071200 -150217462 - L1 LINE L1 -1354 4792 4339 226 284 68 0 chr4 34071214 34071302 -150217360 - L1 LINE L1 -1922 4224 4131 2167 119 0 0 chr4 34071431 34071733 -150216929 - AluSx SINE Alu -8 304 3 21 82 0 0 chr4 34072161 34072210 -150216452 + AT_rich Low_complexity Low_complexity 1 49 0 657 181 0 45 chr4 34072416 34072549 -150216113 + AluJb SINE Alu 1 127 -185 29 28 0 0 chr4 34072705 34072741 -150215921 + AT_rich Low_complexity Low_complexity 1 36 0 384 331 41 35 chr4 34072939 34073108 -150215554 + MER5A DNA MER1_type 20 189 0 270 338 11 43 chr4 34073108 34073278 -150215384 - MER5B DNA MER1_type -6 172 18 445 110 55 0 chr4 34073604 34073677 -150214985 + AluSq/x SINE Alu 61 137 -175 1413 164 0 0 chr4 34073677 34073897 -150214765 + AluSg/x SINE Alu 90 309 -3 808 327 93 16 chr4 34073921 34074297 -150214365 - L2 LINE L2 -2646 668 264 352 366 46 16 chr4 34074902 34075096 -150213566 + L2 LINE L2 2430 2629 -685 222 118 0 0 chr4 34075465 34075499 -150213163 + (T)n Simple_repeat Simple_repeat 1 34 0 1151 231 80 41 chr4 34076844 34077324 -150211338 - MER67C LTR ERV1 -37 477 15 6007 150 47 19 chr4 34077386 34078583 -150210079 + Tigger3b DNA MER2_type 1 1230 -1 216 0 0 0 chr4 34078860 34078884 -150209778 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 591 213 41 77 chr4 34080067 34080236 -150208426 + MER20 DNA MER1_type 56 218 -1 264 138 0 55 chr4 34081423 34081532 -150207130 + (GA)n Simple_repeat Simple_repeat 2 104 0 283 301 62 26 chr4 34083391 34083504 -150205158 - MLT1E LTR MaLR -455 138 22 367 351 65 103 chr4 34084350 34084388 -150204274 - HAL1 LINE L1 -1832 675 637 402 21 0 0 chr4 34084388 34084435 -150204227 + (TG)n Simple_repeat Simple_repeat 2 48 0 367 351 65 103 chr4 34084435 34084729 -150203933 - HAL1 LINE L1 -1870 637 333 2181 151 27 24 chr4 34084729 34085141 -150203521 - L1MA6 LINE L1 0 6300 5888 367 351 65 103 chr4 34085141 34085225 -150203437 - HAL1 LINE L1 -2174 333 247 342 0 0 0 chr4 34085225 34085263 -150203399 + (TG)n Simple_repeat Simple_repeat 2 39 0 367 351 65 103 chr4 34085263 34085540 -150203122 - HAL1 LINE L1 -2260 247 7 24 0 0 0 chr4 34086189 34086213 -150202449 + AT_rich Low_complexity Low_complexity 1 24 0 3514 215 42 33 chr4 34086819 34087236 -150201426 - L1MB8 LINE L1 -108 6881 6469 892 112 0 0 chr4 34087236 34087370 -150201292 - L1PA14 LINE L1 -3 6158 6025 3514 215 42 33 chr4 34087370 34088818 -150199844 - L1MB8 LINE L1 -520 6469 4998 36 82 0 0 chr4 34088854 34088939 -150199723 + AT_rich Low_complexity Low_complexity 1 85 0 1290 279 32 16 chr4 34088939 34089434 -150199228 - L1MB8 LINE L1 -1980 4977 4475 6922 62 0 8 chr4 34089554 34091199 -150197463 - L1PA6 LINE L1 0 6154 4513 1388 242 78 67 chr4 34091203 34092177 -150196485 - L1MB8 LINE L1 -2446 4511 3527 25 0 0 0 chr4 34092177 34092202 -150196460 + AT_rich Low_complexity Low_complexity 1 25 0 1808 293 49 31 chr4 34092252 34093327 -150195335 - L1MB8 LINE L1 -4536 2423 1329 1691 335 61 26 chr4 34093984 34094822 -150193840 - L1MB8 LINE L1 -5951 908 42 27 29 0 0 chr4 34094907 34094941 -150193721 + AT_rich Low_complexity Low_complexity 1 34 0 1116 277 52 38 chr4 34094981 34095479 -150193183 + MLT1D LTR MaLR 1 505 0 26 30 0 0 chr4 34095602 34095635 -150193027 + AT_rich Low_complexity Low_complexity 1 33 0 311 253 46 11 chr4 34095640 34095727 -150192935 + L1MC4 LINE L1 6621 6710 -1332 217 341 55 0 chr4 34097790 34097881 -150190781 - L2 LINE L2 -775 2539 2444 193 347 14 0 chr4 34100742 34100814 -150187848 - MIR SINE MIR -127 135 63 743 200 0 0 chr4 34101954 34102084 -150186578 + FLAM_C SINE Alu 2 131 -2 6453 75 12 8 chr4 34104004 34105354 -150183308 + L1PA7 LINE L1 4795 6148 -6 285 246 0 0 chr4 34105357 34105422 -150183240 + L1MCa LINE L1 1612 1676 -4750 252 0 0 0 chr4 34105424 34105452 -150183210 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 664 332 20 10 chr4 34106578 34106870 -150181792 + MLT1J1 LTR MaLR 8 302 -144 24 32 0 0 chr4 34107219 34107250 -150181412 + AT_rich Low_complexity Low_complexity 1 31 0 666 221 12 18 chr4 34108120 34108283 -150180379 + MER3 DNA MER1_type 23 184 -25 1715 182 3 13 chr4 34108773 34109080 -150179582 + AluJb SINE Alu 1 304 -8 414 315 32 37 chr4 34111836 34112052 -150176610 - L2 LINE L2 -1 3312 3098 5655 160 24 34 chr4 34112359 34112544 -150176118 - L1MA3 LINE L1 0 6305 6120 1569 185 33 0 chr4 34112544 34112820 -150175842 + AluJb SINE Alu 1 285 -27 5655 160 24 34 chr4 34112820 34113032 -150175630 - L1MA3 LINE L1 -185 6120 5907 1681 159 0 57 chr4 34113032 34113352 -150175310 + AluSx SINE Alu 5 307 0 5655 160 24 34 chr4 34113352 34114281 -150174381 - L1MA3 LINE L1 -398 5907 4994 208 271 0 0 chr4 34114768 34114816 -150173846 + L2 LINE L2 2602 2649 -665 23 33 0 0 chr4 34114886 34114916 -150173746 + AT_rich Low_complexity Low_complexity 1 30 0 1396 207 26 0 chr4 34114923 34115193 -150173469 - AluJo SINE Alu -22 290 14 1951 111 0 52 chr4 34115522 34115847 -150172815 + AluSc SINE Alu 1 308 -1 2796 10 0 0 chr4 34116295 34116602 -150172060 + AluY SINE Alu 1 307 -4 35 63 0 0 chr4 34116902 34116965 -150171697 + AT_rich Low_complexity Low_complexity 1 63 0 1311 239 32 67 chr4 34117491 34118014 -150170648 + MLT1D LTR MaLR 1 505 0 34 24 0 0 chr4 34118239 34118280 -150170382 + AT_rich Low_complexity Low_complexity 1 41 0 510 305 112 9 chr4 34118586 34118809 -150169853 + MIR SINE MIR 7 252 -10 254 71 0 24 chr4 34119259 34119301 -150169361 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 1287 220 0 52 chr4 34119307 34119598 -150169064 - AluJo SINE Alu -36 276 1 5624 110 38 6 chr4 34119637 34120738 -150167924 + L1PA10 LINE L1 5017 6157 -11 211 324 88 0 chr4 34121299 34121401 -150167261 - L2 LINE L2 0 3313 3203 21 36 0 0 chr4 34121836 34121864 -150166798 + AT_rich Low_complexity Low_complexity 1 28 0 2199 107 0 3 chr4 34122031 34122340 -150166322 + AluY SINE Alu 1 308 -3 336 24 0 0 chr4 34123519 34123560 -150165102 + (CA)n Simple_repeat Simple_repeat 2 42 0 5180 158 14 10 chr4 34124102 34125011 -150163651 - L1PA16 LINE L1 0 6166 5254 283 128 0 0 chr4 34125046 34125093 -150163569 - L1PA16 LINE L1 -860 5286 5240 3938 226 19 25 chr4 34125094 34125637 -150163025 + L1P LINE L1 4235 4769 -1377 192 40 0 0 chr4 34125637 34125662 -150163000 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 3938 226 19 25 chr4 34125662 34126146 -150162516 + L1P LINE L1 4769 5255 -891 1908 140 29 45 chr4 34127155 34127534 -150161128 + THE1C LTR MaLR 1 373 -2 956 202 17 45 chr4 34127723 34128010 -150160652 - L1MB2 LINE L1 -2 7129 6851 1412 109 0 92 chr4 34128016 34128245 -150160417 - AluSc SINE Alu -81 228 21 2135 189 48 50 chr4 34128256 34128774 -150159888 - L1MB2 LINE L1 -343 6788 6271 509 113 0 12 chr4 34128774 34128854 -150159808 + MADE1 DNA Mariner 1 79 -1 2135 189 48 50 chr4 34128854 34129390 -150159272 - L1MB2 LINE L1 -860 6271 5719 4548 236 62 24 chr4 34129391 34130993 -150157669 - L1MB2 LINE L1 -2200 4906 3244 287 282 45 13 chr4 34130998 34131154 -150157508 - L1MB2 LINE L1 -3965 3143 2983 2200 282 54 31 chr4 34131241 34131588 -150157074 - L1MB2 LINE L1 -4512 2596 2258 216 0 0 0 chr4 34131588 34131612 -150157050 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 2200 282 54 31 chr4 34131612 34132308 -150156354 - L1MB2 LINE L1 -4850 2258 1529 230 332 67 45 chr4 34132456 34132679 -150155983 - L1MB2 LINE L1 -6802 228 1 21 36 0 0 chr4 34132928 34132956 -150155706 + AT_rich Low_complexity Low_complexity 1 28 0 965 284 78 35 chr4 34133742 34134348 -150154314 + MLT1E3 LTR MaLR 1 621 -3 315 0 0 0 chr4 34134359 34134394 -150154268 + (TA)n Simple_repeat Simple_repeat 1 35 0 474 234 70 104 chr4 34134671 34134970 -150153692 + L1ME3A LINE L1 5853 6141 -29 889 277 113 41 chr4 34134981 34135109 -150153553 - L1ME3A LINE L1 -335 5835 5718 1860 154 3 3 chr4 34135109 34135401 -150153261 + AluJb SINE Alu 1 292 -20 889 277 113 41 chr4 34135401 34135968 -150152694 - L1ME3A LINE L1 -452 5718 5096 407 311 71 46 chr4 34136040 34136134 -150152528 + MIR SINE MIR 6 96 -166 2011 212 26 9 chr4 34136134 34136348 -150152314 - MSTB1 LTR MaLR 0 432 223 369 0 0 0 chr4 34136348 34136389 -150152273 + (TG)n Simple_repeat Simple_repeat 1 41 0 2011 212 26 9 chr4 34136389 34136599 -150152063 - MSTB1 LTR MaLR -209 223 1 407 311 71 46 chr4 34136599 34136742 -150151920 + MIR SINE MIR 96 249 -13 359 325 25 25 chr4 34136935 34137135 -150151527 - LTR67 LTR ERVL 0 557 358 1335 262 36 25 chr4 34137311 34137673 -150150989 + MLT1E LTR MaLR 226 591 -2 2260 92 7 0 chr4 34138940 34139234 -150149428 + AluY SINE Alu 1 296 -15 26 30 0 0 chr4 34139364 34139397 -150149265 + AT_rich Low_complexity Low_complexity 1 33 0 1514 266 48 48 chr4 34139535 34140032 -150148630 + MLT1F1 LTR MaLR 46 567 0 39 22 0 0 chr4 34140831 34140877 -150147785 + AT_rich Low_complexity Low_complexity 1 46 0 1854 136 0 32 chr4 34141397 34141706 -150146956 + AluSx SINE Alu 3 301 -11 1857 139 0 43 chr4 34141911 34142234 -150146428 + AluY SINE Alu 1 309 -2 303 279 12 67 chr4 34142275 34142440 -150146222 - HAL1 LINE L1 -4 2503 2348 322 198 21 21 chr4 34142625 34142721 -150145941 - HAL1 LINE L1 -297 2210 2115 1724 223 55 81 chr4 34142721 34143386 -150145276 + MLT1E2 LTR MaLR 1 626 0 2418 64 0 13 chr4 34143563 34143877 -150144785 - AluY SINE Alu -1 310 1 293 227 50 25 chr4 34144252 34144371 -150144291 - HAL1 LINE L1 -1421 1086 965 2262 283 93 11 chr4 34144396 34145277 -150143385 - MER69B DNA AcHobo -273 953 1 22 35 0 0 chr4 34145560 34145589 -150143073 + AT_rich Low_complexity Low_complexity 1 29 0 417 374 67 43 chr4 34146120 34146660 -150142002 - HAL1 LINE L1 -1813 694 142 1479 240 34 16 chr4 34146793 34147176 -150141486 + MLT1B LTR MaLR 1 390 0 251 333 103 8 chr4 34148072 34148189 -150140473 + MER91C DNA MER1_type 2 129 -11 1638 203 14 14 chr4 34148497 34148862 -150139800 + MLT1A1 LTR MaLR 1 365 0 23 33 0 0 chr4 34150282 34150312 -150138350 + AT_rich Low_complexity Low_complexity 1 30 0 3692 58 0 2 chr4 34151049 34151518 -150137144 + L1PA8 LINE L1 5694 6161 -11 37 23 0 0 chr4 34151544 34151588 -150137074 + AT_rich Low_complexity Low_complexity 1 44 0 1345 233 98 34 chr4 34152057 34152525 -150136137 + MLT1D LTR MaLR 4 501 -4 596 343 72 52 chr4 34152611 34153645 -150135017 + L2 LINE L2 2148 3201 -71 316 282 51 0 chr4 34154013 34154130 -150134532 + Tigger8 DNA MER2_type 147 269 -397 359 329 81 20 chr4 34154189 34154487 -150134175 + MLT1L LTR MaLR 65 380 -235 484 312 23 18 chr4 34154694 34154912 -150133750 + Tigger8 DNA MER2_type 348 566 -100 27 62 0 0 chr4 34155040 34155088 -150133574 + AT_rich Low_complexity Low_complexity 1 48 0 180 0 0 0 chr4 34155386 34155406 -150133256 + (T)n Simple_repeat Simple_repeat 1 20 0 185 62 0 31 chr4 34155539 34155571 -150133091 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 24 53 0 0 chr4 34156094 34156132 -150132530 + AT_rich Low_complexity Low_complexity 1 38 0 2213 93 3 3 chr4 34156516 34156806 -150131856 - AluSx SINE Alu -20 292 3 200 296 71 51 chr4 34157022 34157120 -150131542 + L3b LINE CR1 1358 1457 -126 446 286 58 7 chr4 34157338 34157492 -150131170 + MIR3 SINE MIR 40 201 -7 1255 217 75 3 chr4 34157662 34157980 -150130682 - MLT1C LTR MaLR -124 343 3 180 210 0 65 chr4 34158084 34158146 -150130516 - MIR SINE MIR -30 232 175 1822 156 0 17 chr4 34158347 34158649 -150130013 + AluSx SINE Alu 3 299 -13 339 244 67 0 chr4 34158914 34159004 -150129658 - MIR SINE MIR -100 162 67 1039 241 56 56 chr4 34159396 34159753 -150128909 - MLT1A2 LTR MaLR 0 374 18 285 149 0 0 chr4 34160863 34160930 -150127732 + (TAGA)n Simple_repeat Simple_repeat 2 68 0 269 282 2 0 chr4 34161242 34161318 -150127344 + MER77 LTR ERV1 22 138 -467 2305 179 19 21 chr4 34161342 34161828 -150126834 - MER31A LTR ERV1 0 485 1 676 169 180 11 chr4 34161847 34162025 -150126637 - L1MA9 LINE L1 -1 6311 6104 2359 59 0 0 chr4 34162030 34162316 -150126346 + AluY SINE Alu 17 302 -9 337 267 0 24 chr4 34162363 34162486 -150126176 + MER21B LTR ERV1 247 366 -239 3114 170 83 33 chr4 34162486 34163174 -150125488 + LTR8A LTR ERV1 1 722 -5 363 294 18 76 chr4 34163241 34163495 -150125167 + MER77 LTR ERV1 409 585 -20 348 182 30 15 chr4 34164391 34164457 -150124205 + MER5A DNA MER1_type 46 112 -77 396 179 40 0 chr4 34164458 34164609 -150124053 + (TA)n Simple_repeat Simple_repeat 2 158 0 617 339 119 27 chr4 34164640 34165234 -150123428 - L2 LINE L2 -113 3200 2551 213 330 62 78 chr4 34165292 34165677 -150122985 - L2 LINE L2 -905 2409 2031 1332 178 98 22 chr4 34165678 34165953 -150122709 + AluJo SINE Alu 1 296 -16 285 301 21 21 chr4 34166457 34166550 -150122112 - L2 LINE L2 -3134 180 88 446 290 101 25 chr4 34166717 34166955 -150121707 - MER21B LTR ERV1 -149 714 459 433 237 80 92 chr4 34166948 34167181 -150121481 - MER77 LTR ERV1 -226 379 145 * 450 275 37 123 chr4 34167524 34167768 -150120894 + MER58A DNA MER1_type 1 223 -1 276 282 8 46 chr4 34167826 34167957 -150120705 + MLT1J LTR MaLR 386 511 0 21 0 0 0 chr4 34170422 34170443 -150118219 + AT_rich Low_complexity Low_complexity 1 21 0 2258 92 10 0 chr4 34171790 34172084 -150116578 - AluY SINE Alu -12 299 3 7224 48 6 0 chr4 34172308 34173230 -150115432 + L1PA3 LINE L1 5228 6155 0 1199 234 164 28 chr4 34173230 34173699 -150114963 + MER92B LTR ERV1 100 632 -4 237 252 18 156 chr4 34173723 34173830 -150114832 + MER92C LTR ERV1 2 65 -489 1451 216 146 47 chr4 34173830 34174297 -150114365 - MER67D LTR ERV1 -1 513 1 237 252 18 156 chr4 34174297 34174407 -150114255 + MER92C LTR ERV1 65 189 -365 235 246 46 0 chr4 34174452 34174517 -150114145 + MER92C LTR ERV1 487 554 0 2087 183 2 20 chr4 34175563 34175968 -150112694 + MER57A LTR ERV1 6 403 0 28 86 0 0 chr4 34176217 34176287 -150112375 + AT_rich Low_complexity Low_complexity 1 70 0 21 0 0 0 chr4 34176402 34176423 -150112239 + AT_rich Low_complexity Low_complexity 1 21 0 273 98 0 0 chr4 34177067 34177108 -150111554 + (CA)n Simple_repeat Simple_repeat 2 42 0 747 48 48 0 chr4 34177618 34177743 -150110919 + (GA)n Simple_repeat Simple_repeat 2 132 0 2339 218 19 23 chr4 34178698 34179180 -150109482 - MLT2B1 LTR ERVL -40 480 1 2344 157 13 60 chr4 34180600 34181047 -150107615 - MSTB LTR MaLR 0 426 1 689 148 74 0 chr4 34181047 34181182 -150107480 - MSTB-int LTR MaLR 0 1651 1507 563 285 21 43 chr4 34181562 34181748 -150106914 + MER58A DNA MER1_type 26 207 -17 421 303 74 71 chr4 34182133 34183066 -150105596 - L1MEd LINE L1 -4750 1560 586 793 319 61 63 chr4 34183813 34184340 -150104322 + LTR67 LTR ERVL 32 557 0 240 358 6 48 chr4 34184757 34184922 -150103740 + L2 LINE L2 3156 3313 0 21 57 0 0 chr4 34184985 34185020 -150103642 + AT_rich Low_complexity Low_complexity 1 35 0 1660 283 22 15 chr4 34185443 34185981 -150102681 - MLT1F LTR MaLR 0 542 1 24 32 0 0 chr4 34186378 34186409 -150102253 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr4 34186677 34186703 -150101959 + AT_rich Low_complexity Low_complexity 1 26 0 1617 202 20 15 chr4 34186810 34187152 -150101510 + MER2 DNA MER2_type 1 344 0 35 41 0 0 chr4 34187427 34187476 -150101186 + AT_rich Low_complexity Low_complexity 1 49 0 1233 234 77 92 chr4 34187483 34188166 -150100496 + MER21B LTR ERV1 25 754 -109 180 0 0 0 chr4 34189147 34189167 -150099495 + (TTG)n Simple_repeat Simple_repeat 2 21 0 26 50 0 0 chr4 34189576 34189616 -150099046 + AT_rich Low_complexity Low_complexity 1 40 0 347 324 58 9 chr4 34189673 34189847 -150098815 - MIR SINE MIR -64 144 9 191 32 65 0 chr4 34190427 34190458 -150098204 + (ATATG)n Simple_repeat Simple_repeat 2 34 0 27 49 0 0 chr4 34190534 34190575 -150098087 + AT_rich Low_complexity Low_complexity 1 41 0 2338 79 3 0 chr4 34190584 34190889 -150097773 - AluY SINE Alu -5 306 1 209 326 104 41 chr4 34191517 34191738 -150096924 + L2 LINE L2 2982 3216 -97 606 204 51 7 chr4 34191928 34192065 -150096597 + MER82 DNA MER2_type 1 143 -510 1333 266 67 32 chr4 34192470 34192906 -150095756 + MER82 DNA MER2_type 200 650 -3 2798 10 0 0 chr4 34193817 34194126 -150094536 + AluYb8 SINE Alu 1 309 -9 408 311 13 13 chr4 34194492 34194643 -150094019 - L2 LINE L2 -4 3309 3159 326 283 80 22 chr4 34195033 34195171 -150093491 - LTR16B LTR ERVL -14 450 305 826 78 39 0 chr4 34195257 34195386 -150093276 - L1MA4A LINE L1 -64 6239 6106 27 29 0 0 chr4 34195606 34195640 -150093022 + AT_rich Low_complexity Low_complexity 1 34 0 24 0 0 0 chr4 34196033 34196057 -150092605 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr4 34196277 34196305 -150092357 + AT_rich Low_complexity Low_complexity 1 28 0 26 50 0 0 chr4 34197787 34197827 -150090835 + AT_rich Low_complexity Low_complexity 1 40 0 289 274 9 44 chr4 34197993 34198106 -150090556 + L1MA10 LINE L1 6215 6323 -11 370 224 24 0 chr4 34198641 34198766 -150089896 + CT-rich Low_complexity Low_complexity 3 130 0 243 204 75 43 chr4 34199254 34199347 -150089315 - L1ME LINE L1 -301 5820 5725 309 214 10 92 chr4 34199723 34199821 -150088841 + L1MC4 LINE L1 6614 6703 -1339 252 159 37 19 chr4 34199822 34199843 -150088819 + (TA)n Simple_repeat Simple_repeat 1 20 -89 2070 126 0 0 chr4 34199843 34200128 -150088534 - AluSq SINE Alu -26 287 3 252 159 37 19 chr4 34200128 34200213 -150088449 + (TA)n Simple_repeat Simple_repeat 20 109 0 23 0 0 0 chr4 34200251 34200274 -150088388 + AT_rich Low_complexity Low_complexity 1 23 0 190 148 37 0 chr4 34200291 34200345 -150088317 + (TA)n Simple_repeat Simple_repeat 1 56 0 392 252 81 9 chr4 34200345 34200456 -150088206 - FLAM_A SINE Alu -14 119 1 2260 101 49 38 chr4 34202000 34202192 -150086470 - THE1B LTR MaLR 0 364 165 1908 138 10 30 chr4 34202192 34202497 -150086165 - AluSp SINE Alu -14 299 1 2260 101 49 38 chr4 34202497 34202650 -150086012 - THE1B LTR MaLR -199 165 15 231 188 0 0 chr4 34203311 34203359 -150085303 + (CA)n Simple_repeat Simple_repeat 1 48 0 25 31 0 0 chr4 34203620 34203652 -150085010 + AT_rich Low_complexity Low_complexity 1 32 0 29 78 0 0 chr4 34204029 34204093 -150084569 + AT_rich Low_complexity Low_complexity 1 64 0 2121 181 41 14 chr4 34204622 34205037 -150083625 + MSTB LTR MaLR 1 426 0 333 68 0 0 chr4 34205373 34205417 -150083245 + (CAAAA)n Simple_repeat Simple_repeat 4 47 0 23 33 0 0 chr4 34205461 34205491 -150083171 + AT_rich Low_complexity Low_complexity 1 30 0 188 0 74 0 chr4 34205894 34205921 -150082741 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1361 201 48 8 chr4 34205924 34206192 -150082470 - AluJb SINE Alu -27 285 7 377 250 24 18 chr4 34206702 34206866 -150081796 + (TA)n Simple_repeat Simple_repeat 2 166 0 24 0 0 0 chr4 34206908 34206932 -150081730 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr4 34207570 34207600 -150081062 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr4 34208049 34208070 -150080592 + AT_rich Low_complexity Low_complexity 1 21 0 2202 95 3 0 chr4 34208108 34208404 -150080258 - AluSg SINE Alu -13 297 1 25 0 0 0 chr4 34209594 34209619 -150079043 + AT_rich Low_complexity Low_complexity 1 25 0 24 67 0 0 chr4 34209681 34209726 -150078936 + AT_rich Low_complexity Low_complexity 1 45 0 948 92 15 0 chr4 34210222 34210352 -150078310 - AluYb8 SINE Alu -186 132 1 2290 101 0 0 chr4 34211267 34211565 -150077097 + AluSc SINE Alu 5 302 -7 34 24 0 0 chr4 34211745 34211786 -150076876 + AT_rich Low_complexity Low_complexity 1 41 0 181 315 14 14 chr4 34212116 34212189 -150076473 + MIR SINE MIR 159 231 -31 1519 99 25 58 chr4 34212465 34212708 -150075954 + THE1A LTR MaLR 1 235 -120 3540 10 0 0 chr4 34212708 34213104 -150075558 - L1PA3 LINE L1 -304 5851 5456 2382 25 0 0 chr4 34213104 34213383 -150075279 + L1PA3 LINE L1 5876 6155 0 872 133 0 15 chr4 34213390 34213525 -150075137 + THE1A LTR MaLR 223 355 0 417 102 0 0 chr4 34213613 34213672 -150074990 + MADE1 DNA Mariner 22 80 0 2213 144 10 13 chr4 34213721 34214118 -150074544 - L1MA2 LINE L1 0 6304 5909 1508 254 74 52 chr4 34214180 34215366 -150073296 - L1M4c LINE L1 -3160 3055 1876 2077 179 5 47 chr4 34215373 34215757 -150072905 + MLT2D LTR ERVL 1 367 -47 408 20 0 0 chr4 34215757 34215806 -150072856 + (TA)n Simple_repeat Simple_repeat 2 50 0 2077 179 5 47 chr4 34215806 34215846 -150072816 + MLT2D LTR ERVL 367 407 -7 577 297 52 80 chr4 34215854 34216123 -150072539 - L1M4c LINE L1 -4535 1861 1586 2284 108 0 0 chr4 34216123 34216419 -150072243 + AluSc SINE Alu 1 296 -13 577 297 52 80 chr4 34216419 34217367 -150071295 - L1M4c LINE L1 -4810 1586 670 21 0 0 0 chr4 34217641 34217662 -150071000 + AT_rich Low_complexity Low_complexity 1 21 0 756 169 0 22 chr4 34217718 34217854 -150070808 - FLAM_C SINE Alu 0 133 1 3028 111 25 0 chr4 34218716 34219165 -150069497 + L1PB1 LINE L1 5691 6150 -1 1266 212 9 51 chr4 34219222 34219538 -150069124 - AluJo SINE Alu -7 305 3 335 342 61 53 chr4 34221231 34221459 -150067203 + MIR SINE MIR 33 262 0 368 167 0 13 chr4 34222533 34222611 -150066051 + GA-rich Low_complexity Low_complexity 4 80 0 286 109 87 0 chr4 34223245 34223337 -150065325 + (TA)n Simple_repeat Simple_repeat 2 101 0 347 250 80 43 chr4 34223933 34224121 -150064541 - LTR50 LTR ERVL -591 204 10 209 333 148 14 chr4 34224122 34224332 -150064330 - L3 LINE CR1 -467 1110 873 413 226 68 7 chr4 34225058 34225204 -150063458 - MER103 DNA DNA -10 156 2 1750 160 3 14 chr4 34226182 34226475 -150062187 + AluJb SINE Alu 3 292 -20 237 229 0 31 chr4 34226732 34226828 -150061834 + T-rich Low_complexity Low_complexity 1 93 0 34 0 0 0 chr4 34226832 34226866 -150061796 + AT_rich Low_complexity Low_complexity 1 34 0 317 263 0 0 chr4 34226866 34226923 -150061739 + T-rich Low_complexity Low_complexity 1 57 0 242 237 0 0 chr4 34226979 34227055 -150061607 + T-rich Low_complexity Low_complexity 1 76 0 68 28 0 0 chr4 34227055 34227127 -150061535 + AT_rich Low_complexity Low_complexity 1 72 0 194 36 18 91 chr4 34227144 34227199 -150061463 + (TTTA)n Simple_repeat Simple_repeat 3 53 0 930 194 35 30 chr4 34228590 34228822 -150059840 + L1MA4 LINE L1 6067 6299 -1 1189 48 0 0 chr4 34229612 34229757 -150058905 - AluY SINE Alu -166 145 1 184 229 12 108 chr4 34230445 34230528 -150058134 + MIR SINE MIR 129 203 -59 384 22 0 0 chr4 34231668 34231713 -150056949 + (CA)n Simple_repeat Simple_repeat 1 45 0 394 106 76 0 chr4 34232424 34232490 -150056172 - MADE1 DNA Mariner -7 73 3 1164 208 140 4 chr4 34232502 34232752 -150055910 - AluJb SINE Alu -18 284 1 21 0 0 0 chr4 34232753 34232774 -150055888 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 34233332 34233354 -150055308 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr4 34233761 34233796 -150054866 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr4 34233995 34234019 -150054643 + AT_rich Low_complexity Low_complexity 1 24 0 298 353 139 5 chr4 34234984 34235185 -150053477 - MIR SINE MIR -1 261 34 2332 73 3 0 chr4 34235458 34235758 -150052904 + AluY SINE Alu 1 301 -10 24 32 0 0 chr4 34236955 34236986 -150051676 + AT_rich Low_complexity Low_complexity 1 31 0 1829 180 36 30 chr4 34237393 34237755 -150050907 + THE1B LTR MaLR 1 364 0 1054 69 0 0 chr4 34238006 34238150 -150050512 - L1PA4 LINE L1 -1 6154 6011 342 0 0 0 chr4 34240126 34240164 -150048498 + (TG)n Simple_repeat Simple_repeat 1 38 0 1061 147 0 0 chr4 34241645 34241802 -150046860 + FRAM SINE Alu 1 40 0 923 198 81 127 chr4 34242436 34242544 -150046118 + MLT1B LTR MaLR 1 112 -278 1554 194 66 0 chr4 34242544 34242833 -150045829 + AluJb SINE Alu 3 310 -2 923 198 81 127 chr4 34242833 34243133 -150045529 + MLT1B LTR MaLR 112 390 0 2330 194 30 42 chr4 34243155 34243655 -150045007 + Tigger7 DNA MER2_type 10 503 -230 408 236 0 66 chr4 34243649 34243755 -150044907 + Tigger7 DNA MER2_type 2388 2486 -1 * 1031 267 105 34 chr4 34244209 34245046 -150043616 + L1ME1 LINE L1 1194 2277 -4330 1829 161 120 28 chr4 34245047 34245439 -150043223 - MSTA LTR MaLR 0 428 1 8687 158 29 20 chr4 34245439 34247004 -150041658 - MSTA-int LTR MaLR 0 1580 2 1755 167 61 19 chr4 34247005 34247364 -150041298 - THE1C LTR MaLR 0 375 2 1338 168 0 0 chr4 34247364 34247590 -150041072 - MSTA-int LTR MaLR -1352 228 3 1598 199 134 11 chr4 34247592 34247973 -150040689 - MSTA LTR MaLR 0 428 1 3411 266 56 74 chr4 34250209 34251083 -150037579 + L1ME1 LINE L1 2424 3312 -3114 1346 211 28 10 chr4 34251083 34251372 -150037290 + AluJb SINE Alu 1 294 -18 3411 266 56 74 chr4 34251372 34253231 -150035431 + L1ME1 LINE L1 3312 5097 -1329 * 4580 245 59 11 chr4 34253223 34255326 -150033336 + L1MC3 LINE L1 4443 5387 -759 188 163 23 0 chr4 34255326 34255369 -150033293 + (TA)n Simple_repeat Simple_repeat 2 45 0 2901 96 0 8 chr4 34255370 34255767 -150032895 + MLT2A1 LTR ERVL 5 398 -46 305 82 20 0 chr4 34255839 34255888 -150032774 + (TC)n Simple_repeat Simple_repeat 2 51 0 201 154 0 0 chr4 34255887 34255926 -150032736 + (TA)n Simple_repeat Simple_repeat 2 40 0 * 6227 73 26 9 chr4 34255967 34256819 -150031843 + HERVL-A1 LTR ERVL 232 1097 -4557 762 252 35 108 chr4 34256819 34256936 -150031726 + L1ME1 LINE L1 5929 6053 -393 1785 72 47 0 chr4 34256936 34257209 -150031453 + AluY SINE Alu 39 322 0 762 252 35 108 chr4 34257209 34257638 -150031024 + L1ME1 LINE L1 6053 6436 -10 26 30 0 0 chr4 34257903 34257936 -150030726 + AT_rich Low_complexity Low_complexity 1 33 0 358 380 51 25 chr4 34258012 34258367 -150030295 - L3 LINE CR1 -81 1496 1133 190 216 27 0 chr4 34259828 34259902 -150028760 + CT-rich Low_complexity Low_complexity 2 77 0 181 407 97 4 chr4 34260640 34260866 -150027796 + L2 LINE L2 2419 2665 -649 2206 81 0 14 chr4 34262584 34262899 -150025763 - AluSg SINE Alu 0 310 2 25 0 0 0 chr4 34263065 34263090 -150025572 + AT_rich Low_complexity Low_complexity 1 25 0 3059 158 81 7 chr4 34263663 34264253 -150024409 + L1PA16 LINE L1 5533 6166 0 183 188 62 0 chr4 34264397 34264445 -150024217 - MIR SINE MIR -55 207 157 28 29 0 0 chr4 34264515 34264550 -150024112 + AT_rich Low_complexity Low_complexity 1 35 0 1389 204 30 35 chr4 34264593 34264990 -150023672 - L1MB1 LINE L1 -1 6167 5773 319 163 88 6 chr4 34264991 34265151 -150023511 + (TA)n Simple_repeat Simple_repeat 1 173 0 190 103 29 44 chr4 34265156 34265224 -150023438 + (TTATA)n Simple_repeat Simple_repeat 3 69 0 22 56 0 0 chr4 34265228 34265264 -150023398 + AT_rich Low_complexity Low_complexity 1 36 0 1950 281 58 28 chr4 34265279 34267118 -150021544 - L1 LINE L1 -3714 3851 2012 189 74 0 0 chr4 34267150 34267177 -150021485 + (TC)n Simple_repeat Simple_repeat 2 28 0 526 346 76 22 chr4 34267395 34267788 -150020874 - L1 LINE L1 -5768 1728 1217 28 29 0 0 chr4 34267851 34267886 -150020776 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr4 34268713 34268741 -150019921 + AT_rich Low_complexity Low_complexity 1 28 0 448 213 14 85 chr4 34268800 34268941 -150019721 + L2 LINE L2 3164 3294 -19 222 320 27 13 chr4 34268970 34269045 -150019617 - L2 LINE L2 -50 3263 3188 219 132 15 59 chr4 34270670 34270738 -150017924 + (TATAA)n Simple_repeat Simple_repeat 1 65 0 3206 65 9 2 chr4 34270749 34271177 -150017485 + L1PA7 LINE L1 5724 6154 0 243 146 0 0 chr4 34271300 34271341 -150017321 + (TG)n Simple_repeat Simple_repeat 1 41 0 222 361 105 38 chr4 34271507 34271745 -150016917 + L2 LINE L2 3018 3271 -1 1668 136 70 0 chr4 34272323 34272438 -150016224 + AluSx SINE Alu 7 113 -199 423 0 0 0 chr4 34272438 34272485 -150016177 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 1668 136 70 0 chr4 34272485 34272655 -150016007 + AluSx SINE Alu 113 312 0 23 0 0 0 chr4 34272824 34272847 -150015815 + AT_rich Low_complexity Low_complexity 1 23 0 3703 203 30 45 chr4 34273239 34274664 -150013998 + L1MA10 LINE L1 4928 6324 -10 231 188 0 0 chr4 34276002 34276050 -150012612 + (TATATG)n Simple_repeat Simple_repeat 1 48 0 229 258 11 11 chr4 34276050 34276139 -150012523 + L1MC4 LINE L1 6615 6703 -1339 21 71 0 0 chr4 34276162 34276204 -150012458 + AT_rich Low_complexity Low_complexity 1 42 0 283 223 115 69 chr4 34276876 34277006 -150011656 + MIR SINE MIR 79 214 -48 21 0 0 0 chr4 34277089 34277110 -150011552 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr4 34277257 34277288 -150011374 + AT_rich Low_complexity Low_complexity 1 31 0 2106 112 6 10 chr4 34277290 34277603 -150011059 + AluSx SINE Alu 1 312 0 1077 250 138 33 chr4 34278139 34278595 -150010067 - MLT1D LTR MaLR -8 497 1 35 63 0 0 chr4 34279029 34279092 -150009570 + AT_rich Low_complexity Low_complexity 1 63 0 2185 118 0 0 chr4 34279245 34279550 -150009112 + AluSx SINE Alu 1 305 -7 22 0 0 0 chr4 34279827 34279849 -150008813 + AT_rich Low_complexity Low_complexity 1 22 0 575 89 16 40 chr4 34279983 34280284 -150008378 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2218 115 0 3 chr4 34280284 34280597 -150008065 - AluSx SINE Alu 0 613 1 1416 213 66 49 chr4 34281592 34282136 -150006526 + MLT2A2 LTR ERVL 1 554 0 272 234 85 11 chr4 34282560 34282654 -150006008 - LTR16A1 LTR ERVL -43 414 314 1610 215 22 47 chr4 34283108 34283596 -150005066 - L1PA16 LINE L1 -786 5360 4885 4447 157 22 4 chr4 34283596 34284368 -150004294 + L1PA16 LINE L1 5381 6166 0 483 259 150 34 chr4 34284789 34285055 -150003607 + LTR33A LTR ERVL 223 519 -4 600 208 95 54 chr4 34285529 34285679 -150002983 - L1MD3 LINE L1 -19 7976 7813 1857 136 0 42 chr4 34285679 34285989 -150002673 + AluSg SINE Alu 1 297 -13 600 208 95 54 chr4 34285989 34286059 -150002603 - L1MD3 LINE L1 -182 7813 7747 264 100 0 0 chr4 34286090 34286130 -150002532 + (CCAA)n Simple_repeat Simple_repeat 4 43 0 251 303 80 37 chr4 34286154 34286342 -150002320 + HAL1 LINE L1 1412 1607 -900 272 328 102 21 chr4 34286949 34287135 -150001527 - LTR33 LTR ERVL 0 521 321 328 385 66 0 chr4 34287196 34287378 -150001284 - LTR33 LTR ERVL -309 212 19 1422 208 120 8 chr4 34288622 34288973 -149999689 - MLT1B LTR MaLR 0 390 1 278 278 66 28 chr4 34290172 34290384 -149998278 + L1 LINE L1 2401 2620 -3526 256 135 0 0 chr4 34290698 34290735 -149997927 + L1 LINE L1 3875 3911 -2235 22 80 0 0 chr4 34290741 34290791 -149997871 + AT_rich Low_complexity Low_complexity 1 50 0 473 292 151 39 chr4 34290847 34291278 -149997384 + L1 LINE L1 4035 4513 -1633 218 267 160 0 chr4 34292748 34292823 -149995839 + L2 LINE L2 3220 3306 -7 5457 123 25 6 chr4 34293718 34294614 -149994048 + L1MA1 LINE L1 1944 2856 -4709 * 9478 173 23 10 chr4 34294595 34295552 -149993110 + L1MA1 LINE L1 4627 5571 -2150 1885 135 0 52 chr4 34295552 34295879 -149992783 + AluSx SINE Alu 1 310 -2 9478 173 23 10 chr4 34295879 34296886 -149991776 + L1MA1 LINE L1 5571 6564 -1157 2265 92 3 3 chr4 34296886 34297191 -149991471 + AluSg SINE Alu 1 305 -5 9478 173 23 10 chr4 34297191 34298279 -149990383 + L1MA1 LINE L1 6564 7721 0 727 366 117 10 chr4 34298426 34298929 -149989733 - L2 LINE L2 -2728 586 30 200 383 65 0 chr4 34299010 34299117 -149989545 + MIR3 SINE MIR 65 178 -30 388 374 70 0 chr4 34299212 34299442 -149989220 - MIR SINE MIR 0 262 17 23 0 0 0 chr4 34299483 34299506 -149989156 + AT_rich Low_complexity Low_complexity 1 23 0 2190 66 28 3 chr4 34300265 34300551 -149988111 + AluSq SINE Alu 4 296 -17 231 36 0 0 chr4 34300560 34300588 -149988074 + (GGGGA)n Simple_repeat Simple_repeat 5 32 0 677 105 0 9 chr4 34300613 34300727 -149987935 + (GGAA)n Simple_repeat Simple_repeat 3 115 0 24 32 0 0 chr4 34300970 34301001 -149987661 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr4 34301266 34301290 -149987372 + AT_rich Low_complexity Low_complexity 1 24 0 1955 132 60 30 chr4 34301650 34302014 -149986648 + THE1C LTR MaLR 1 375 0 698 244 35 0 chr4 34302604 34302776 -149985886 + MER20 DNA MER1_type 1 178 -41 1713 290 71 28 chr4 34303094 34304083 -149984579 - L1ME2 LINE L1 -243 5990 5045 1192 215 0 4 chr4 34304083 34304320 -149984342 + MER46A DNA MER2_type 1 236 0 1713 290 71 28 chr4 34304320 34304694 -149983968 - L1ME2 LINE L1 -1188 5045 4688 1984 130 0 13 chr4 34304694 34304995 -149983667 + AluSg SINE Alu 1 297 -13 1713 290 71 28 chr4 34304995 34305361 -149983301 - L1ME2 LINE L1 -1545 4688 4187 306 302 28 37 chr4 34305392 34305607 -149983055 - L1ME2 LINE L1 -2316 3899 3687 8507 122 18 0 chr4 34305680 34306932 -149981730 - HSMAR1 DNA Mariner -3 1284 11 301 300 82 24 chr4 34306969 34307139 -149981523 - L1ME2 LINE L1 -2620 3595 3416 950 163 0 0 chr4 34307242 34307389 -149981273 - AluSg/x SINE Alu -12 300 154 316 332 75 57 chr4 34307537 34307769 -149980893 - L1ME2 LINE L1 -4613 1783 1557 1710 190 0 0 chr4 34307769 34308058 -149980604 - AluSx SINE Alu -23 289 1 316 332 75 57 chr4 34308058 34309480 -149979182 - L1ME2 LINE L1 -4839 1557 100 1152 158 127 84 chr4 34310106 34310453 -149978209 + MSTA LTR MaLR 14 428 0 307 314 27 25 chr4 34312184 34312342 -149976320 + MIR SINE MIR 60 217 -45 2110 273 69 32 chr4 34313549 34313749 -149974913 - L1M1 LINE L1 -3953 3612 3421 249 33 0 0 chr4 34313749 34313779 -149974883 + (TG)n Simple_repeat Simple_repeat 1 30 0 2110 273 69 32 chr4 34313779 34314336 -149974326 - L1M1 LINE L1 -4144 3421 2886 212 0 36 0 chr4 34314336 34314364 -149974298 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2110 273 69 32 chr4 34314364 34315253 -149973409 - L1M1 LINE L1 -4679 2886 2097 1008 168 22 5 chr4 34315252 34315437 -149973225 - L1 LINE L1 -1906 4240 4053 * 1476 342 49 43 chr4 34315459 34316491 -149972171 - L1M1 LINE L1 -5241 2255 1217 1720 246 35 43 chr4 34318434 34318942 -149969720 + MER67D LTR ERV1 1 504 -10 424 263 26 64 chr4 34319371 34319527 -149969135 - MER69A DNA AcHobo -9 168 19 225 275 0 25 chr4 34319930 34320010 -149968652 + (TATATG)n Simple_repeat Simple_repeat 5 82 0 30 27 0 0 chr4 34320396 34320433 -149968229 + AT_rich Low_complexity Low_complexity 1 37 0 324 314 58 43 chr4 34320806 34320994 -149967668 + Charlie2 DNA MER1_type 26 216 -2566 186 167 0 0 chr4 34320995 34321031 -149967631 + (CATA)n Simple_repeat Simple_repeat 4 39 0 336 237 26 0 chr4 34321125 34321201 -149967461 + Charlie2 DNA MER1_type 1895 1972 -890 23 0 0 0 chr4 34321440 34321463 -149967199 + AT_rich Low_complexity Low_complexity 1 23 0 1193 173 90 12 chr4 34322352 34322644 -149966018 - L1MA4 LINE L1 -4 6296 5987 399 225 166 47 chr4 34322841 34323010 -149965652 - MIR SINE MIR -6 256 68 262 366 84 8 chr4 34323024 34323155 -149965507 + L2 LINE L2 3132 3272 0 32 43 0 0 chr4 34324818 34324864 -149963798 + AT_rich Low_complexity Low_complexity 1 46 0 31 88 0 0 chr4 34325081 34325161 -149963501 + AT_rich Low_complexity Low_complexity 1 80 0 1210 193 16 62 chr4 34325358 34325663 -149962999 - AluJo SINE Alu -10 302 12 22 0 0 0 chr4 34326139 34326161 -149962501 + AT_rich Low_complexity Low_complexity 1 22 0 1627 158 29 0 chr4 34326291 34326564 -149962098 + AluSx SINE Alu 21 301 -11 495 291 160 50 chr4 34326682 34327256 -149961406 - L1M4 LINE L1 -1397 4749 4113 39 65 0 28 chr4 34327360 34327467 -149961195 + AT_rich Low_complexity Low_complexity 1 104 0 294 193 36 72 chr4 34327591 34327674 -149960988 - MIR SINE MIR 0 262 183 42 0 0 0 chr4 34327923 34327965 -149960697 + AT_rich Low_complexity Low_complexity 1 42 0 652 329 68 49 chr4 34328059 34328773 -149959889 - L2 LINE L2 -8 3305 2577 272 138 58 23 chr4 34329005 34329092 -149959570 - L1MA7 LINE L1 -1 6290 6201 22 0 0 0 chr4 34329432 34329454 -149959208 + AT_rich Low_complexity Low_complexity 1 22 0 311 337 176 12 chr4 34329948 34330203 -149958459 + L2 LINE L2 2612 2908 -406 264 185 15 0 chr4 34330518 34330583 -149958079 - LTR66 LTR ERVL -151 459 394 234 274 0 0 chr4 34330583 34330634 -149958028 + (CATATA)n Simple_repeat Simple_repeat 4 54 0 1938 122 0 17 chr4 34330643 34330930 -149957732 + AluSx SINE Alu 3 284 -28 210 34 51 51 chr4 34330987 34331046 -149957616 + (TA)n Simple_repeat Simple_repeat 1 59 0 22 56 0 0 chr4 34331064 34331100 -149957562 + AT_rich Low_complexity Low_complexity 1 36 0 32 26 0 0 chr4 34331435 34331474 -149957188 + AT_rich Low_complexity Low_complexity 1 39 0 33 85 0 0 chr4 34332221 34332303 -149956359 + AT_rich Low_complexity Low_complexity 1 82 0 389 251 148 6 chr4 34332467 34332650 -149956012 + L1MC3 LINE L1 5761 5967 -199 519 204 39 0 chr4 34332650 34332753 -149955909 + U6 snRNA snRNA 1 107 0 1391 108 99 14 chr4 34332780 34333002 -149955660 - AluSq SINE Alu -72 241 1 219 36 0 0 chr4 34333021 34333049 -149955613 + (A)n Simple_repeat Simple_repeat 1 28 0 365 228 140 52 chr4 34333066 34333202 -149955460 + L1ME1 LINE L1 5963 6110 -56 34 24 0 0 chr4 34333785 34333826 -149954836 + AT_rich Low_complexity Low_complexity 1 41 0 30 59 0 0 chr4 34334589 34334640 -149954022 + AT_rich Low_complexity Low_complexity 1 51 0 23 54 0 0 chr4 34335013 34335050 -149953612 + AT_rich Low_complexity Low_complexity 1 37 0 358 287 91 7 chr4 34335580 34335723 -149952939 + MIR SINE MIR 108 262 0 22 0 0 0 chr4 34335743 34335765 -149952897 + AT_rich Low_complexity Low_complexity 1 22 0 207 326 0 23 chr4 34335888 34335974 -149952688 + CT-rich Low_complexity Low_complexity 2 85 0 244 281 59 84 chr4 34337142 34337345 -149951317 + L2 LINE L2 2594 2791 -523 200 94 31 0 chr4 34337549 34337581 -149951081 + (CAGAA)n Simple_repeat Simple_repeat 4 36 0 259 231 0 0 chr4 34337869 34337921 -149950741 + MER94 DNA DNA 1 52 -82 920 321 76 49 chr4 34338158 34339549 -149949113 + L1MEc LINE L1 82 1510 -4886 1171 286 60 44 chr4 34339651 34340519 -149948143 + L1MEc LINE L1 2698 3579 -2636 308 311 22 0 chr4 34340586 34340766 -149947896 + MER20B DNA MER1_type 515 698 -85 1567 198 58 9 chr4 34341788 34342132 -149946530 + MER47A DNA MER2_type 6 366 0 692 231 71 123 chr4 34343044 34343149 -149945513 + MER57A LTR ERV1 43 152 -251 638 248 45 20 chr4 34343149 34343351 -149945311 - MER6B DNA MER2_type -3 207 1 692 231 71 123 chr4 34343351 34343626 -149945036 + MER57A LTR ERV1 152 403 0 200 132 26 0 chr4 34343865 34343903 -149944759 + A-rich Low_complexity Low_complexity 2 40 0 1632 163 37 37 chr4 34344685 34345060 -149943602 - THE1C LTR MaLR 0 375 1 205 330 38 57 chr4 34345477 34345686 -149942976 + L2 LINE L2 3047 3251 -62 9491 89 17 0 chr4 34346122 34348241 -149940421 + L1PA7 LINE L1 4012 6146 -8 41 58 0 0 chr4 34348617 34348686 -149939976 + AT_rich Low_complexity Low_complexity 1 69 0 222 278 62 62 chr4 34349001 34349145 -149939517 - MIR SINE MIR 0 262 119 238 238 124 21 chr4 34349152 34349345 -149939317 - MER97a DNA MER1_type? -23 871 659 196 224 0 24 chr4 34349451 34349536 -149939126 + (CATA)n Simple_repeat Simple_repeat 1 83 0 267 150 0 0 chr4 34349683 34349723 -149938939 - 5S rRNA rRNA -81 40 1 3901 177 8 18 chr4 34349723 34350357 -149938305 + L1PA15 LINE L1 4623 5262 -903 1792 123 64 131 chr4 34350357 34350540 -149938122 + THE1B LTR MaLR 1 146 -218 2197 114 0 0 chr4 34350540 34350829 -149937833 - AluY SINE Alu -22 289 1 1792 123 64 131 chr4 34350829 34351035 -149937627 + THE1B LTR MaLR 146 364 0 3901 177 8 18 chr4 34351035 34351248 -149937414 + L1PA15 LINE L1 5262 5476 -689 2872 138 4 17 chr4 34351248 34351712 -149936950 + LTR22A LTR ERVK 1 458 0 3901 177 8 18 chr4 34351712 34352172 -149936490 + L1PA15 LINE L1 5476 5918 -247 1776 139 7 4 chr4 34352172 34352452 -149936210 + L1PA15 LINE L1 5868 6148 -17 3878 16 0 2 chr4 34352453 34352898 -149935764 + L1PA3 LINE L1 5698 6141 -14 541 338 68 18 chr4 34353342 34353561 -149935101 + L2 LINE L2 2841 3070 -243 183 80 0 0 chr4 34353602 34353627 -149935035 + (T)n Simple_repeat Simple_repeat 1 25 0 6500 9 0 1 chr4 34353630 34354369 -149934293 - L1HS LINE L1 -5 6150 5413 385 313 103 15 chr4 34354370 34354565 -149934097 + L2 LINE L2 3100 3311 -2 269 312 77 12 chr4 34355067 34355237 -149933425 - L1ME LINE L1 -374 5747 5567 271 345 62 34 chr4 34355832 34355944 -149932718 + MIR SINE MIR 31 153 -109 1617 220 42 11 chr4 34355944 34356322 -149932340 + MLT1B LTR MaLR 1 390 0 271 345 62 34 chr4 34356322 34356418 -149932244 + MIR SINE MIR 153 245 -17 474 336 32 18 chr4 34356850 34357067 -149931595 - MIR SINE MIR -12 250 31 25 0 0 0 chr4 34357201 34357226 -149931436 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr4 34357951 34357973 -149930689 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr4 34358048 34358076 -149930586 + AT_rich Low_complexity Low_complexity 1 28 0 2156 203 115 8 chr4 34358743 34359240 -149929422 + MER44D DNA MER2_type 1 605 0 1066 141 17 167 chr4 34359741 34360040 -149928622 - L1PA16 LINE L1 -19 6147 5894 284 290 10 0 chr4 34360150 34360250 -149928412 + (TA)n Simple_repeat Simple_repeat 1 101 0 180 152 0 0 chr4 34360270 34360303 -149928359 + GA-rich Low_complexity Low_complexity 1 33 0 279 315 11 22 chr4 34360713 34360805 -149927857 + L2 LINE L2 3181 3271 -1 335 231 154 0 chr4 34361411 34361515 -149927147 + LTR40a LTR ERVL 14 133 -386 2166 183 58 2 chr4 34361516 34361932 -149926730 - Tigger2 DNA MER2_type 0 2718 2280 271 186 51 17 chr4 34361936 34361995 -149926667 - Tigger2 DNA MER2_type -2657 61 1 925 247 120 29 chr4 34362050 34362358 -149926304 + LTR40a LTR ERVL 182 517 -2 22 0 0 0 chr4 34363068 34363090 -149925572 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr4 34363350 34363375 -149925287 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr4 34363526 34363554 -149925108 + AT_rich Low_complexity Low_complexity 1 28 0 311 325 8 0 chr4 34363653 34363773 -149924889 + L1MEc LINE L1 2194 2314 -4082 4525 213 139 32 chr4 34363806 34365253 -149923409 - MER52A LTR ERV1 0 1755 1 501 286 61 81 chr4 34365906 34366051 -149922611 + L1MEc LINE L1 2669 2815 -3400 1624 188 3 3 chr4 34366051 34366367 -149922295 + AluJb SINE Alu 2 317 0 501 286 61 81 chr4 34366367 34366765 -149921897 + L1MEc LINE L1 2815 3202 -3013 1122 203 173 16 chr4 34366822 34367128 -149921534 + MLT1A1 LTR MaLR 1 354 -11 227 244 0 22 chr4 34367605 34367650 -149921012 + MLT1E2 LTR MaLR 1 44 -610 2168 144 8 27 chr4 34367654 34368023 -149920639 - THE1B LTR MaLR 0 364 3 9677 114 76 3 chr4 34368025 34369497 -149919165 - THE1B-int LTR MaLR 0 1580 2 2166 132 27 30 chr4 34369498 34369863 -149918799 - THE1B LTR MaLR 0 364 1 295 182 91 39 chr4 34369872 34369949 -149918713 + MLT1E2 LTR MaLR 87 167 -457 1452 276 31 5 chr4 34369977 34370361 -149918301 + MLT1E2 LTR MaLR 233 626 0 240 216 52 21 chr4 34370361 34370458 -149918204 + L1MEc LINE L1 3727 3826 -2389 189 347 65 16 chr4 34371026 34371150 -149917512 + L2 LINE L2 3179 3308 -5 185 269 19 0 chr4 34372691 34372743 -149915919 + L2 LINE L2 3261 3313 0 276 282 8 76 chr4 34373304 34373382 -149915280 - MIR SINE MIR -100 162 95 1626 209 33 17 chr4 34373382 34373741 -149914921 + MLT1A1 LTR MaLR 1 365 0 276 282 8 76 chr4 34373741 34373793 -149914869 - MIR SINE MIR -167 95 41 726 229 6 0 chr4 34373873 34374048 -149914614 - L1MB4 LINE L1 -1 6179 6004 22 0 0 0 chr4 34374246 34374268 -149914394 + AT_rich Low_complexity Low_complexity 1 22 0 358 293 48 29 chr4 34374497 34374770 -149913892 - L1MEd LINE L1 -4975 1144 867 419 365 84 59 chr4 34374798 34375195 -149913467 - L1MEd LINE L1 -5300 819 433 372 43 0 0 chr4 34375195 34375241 -149913421 + (TG)n Simple_repeat Simple_repeat 2 47 0 419 365 84 59 chr4 34375241 34375641 -149913021 - L1MEd LINE L1 -5686 433 2 295 247 195 45 chr4 34376351 34376505 -149912157 + MIR SINE MIR 56 232 -30 32 43 0 0 chr4 34376584 34376630 -149912032 + AT_rich Low_complexity Low_complexity 1 46 0 228 67 0 0 chr4 34376903 34376933 -149911729 + (TG)n Simple_repeat Simple_repeat 1 30 0 215 311 16 0 chr4 34377033 34377094 -149911568 + L2 LINE L2 3211 3272 0 1814 182 42 37 chr4 34377836 34378265 -149910397 + L1MA7 LINE L1 5855 6285 -6 271 288 136 41 chr4 34378307 34378769 -149909893 + HAL1 LINE L1 2002 2507 0 305 314 32 52 chr4 34379282 34379530 -149909132 - HAL1 LINE L1 -785 1722 1480 457 355 94 58 chr4 34379658 34380092 -149908570 - HAL1 LINE L1 -1443 1064 615 3849 163 12 32 chr4 34380099 34380824 -149907838 + MER50 LTR ERV1 1 711 -23 2483 214 18 32 chr4 34381474 34382036 -149906626 + MER41C LTR ERV1 1 554 0 1128 265 78 51 chr4 34382379 34382507 -149906155 + MLT2B1 LTR ERVL 1 124 -396 1576 177 53 31 chr4 34382507 34382863 -149905799 - THE1B LTR MaLR 0 364 1 1128 265 78 51 chr4 34382863 34383168 -149905494 + MLT2B1 LTR ERVL 124 446 -74 14020 45 1 1 chr4 34383182 34385697 -149902965 - L1PA5 LINE L1 0 6154 3635 13543 53 1 1 chr4 34385697 34387435 -149901227 + L1P LINE L1 1934 3672 -2474 251 255 0 0 chr4 34387452 34387503 -149901159 + CT-rich Low_complexity Low_complexity 3 53 0 21 0 0 0 chr4 34387590 34387611 -149901051 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr4 34388951 34388987 -149899675 + AT_rich Low_complexity Low_complexity 1 36 0 2008 164 44 54 chr4 34389153 34389581 -149899081 - Tigger2a DNA MER2_type 0 434 11 23 92 0 0 chr4 34390022 34390087 -149898575 + AT_rich Low_complexity Low_complexity 1 65 0 25 0 0 0 chr4 34390709 34390734 -149897928 + AT_rich Low_complexity Low_complexity 1 25 0 323 153 76 23 chr4 34390813 34390989 -149897673 + (TA)n Simple_repeat Simple_repeat 1 185 0 27 29 0 0 chr4 34391108 34391142 -149897520 + AT_rich Low_complexity Low_complexity 1 34 0 849 275 35 6 chr4 34391568 34391884 -149896778 + L1 LINE L1 2849 3173 -2973 27 0 0 0 chr4 34391971 34391998 -149896664 + AT_rich Low_complexity Low_complexity 1 27 0 29 28 0 0 chr4 34392348 34392384 -149896278 + AT_rich Low_complexity Low_complexity 1 36 0 30 93 0 0 chr4 34392687 34392773 -149895889 + AT_rich Low_complexity Low_complexity 1 86 0 334 239 45 11 chr4 34393045 34393133 -149895529 + LTR33 LTR ERVL 429 519 -2 42 57 0 0 chr4 34395491 34395561 -149893101 + AT_rich Low_complexity Low_complexity 1 70 0 313 143 0 0 chr4 34396579 34396628 -149892034 - MLT2D LTR ERVL 0 414 366 1660 231 55 30 chr4 34396655 34397127 -149891535 + MER76 LTR ERV 205 688 0 193 404 60 48 chr4 34397404 34397738 -149890924 - L2 LINE L2 -2 3270 2933 276 368 37 7 chr4 34398037 34398173 -149890489 + MER5B DNA MER1_type 2 141 -37 41 58 0 0 chr4 34399082 34399151 -149889511 + AT_rich Low_complexity Low_complexity 1 69 0 1121 271 103 41 chr4 34399442 34400025 -149888637 + MLT1E3 LTR MaLR 5 623 -1 692 278 6 6 chr4 34401445 34401625 -149887037 + MLT1E2 LTR MaLR 15 194 -432 3706 217 25 41 chr4 34401626 34401759 -149886903 + L1 LINE L1 3212 3346 -2800 1566 213 3 0 chr4 34401759 34402055 -149886607 + AluJo SINE Alu 13 309 -3 3706 217 25 41 chr4 34402055 34402906 -149885756 + L1 LINE L1 3346 4181 -1965 1327 248 90 11 chr4 34402906 34403285 -149885377 + MLT1E2 LTR MaLR 218 626 0 180 0 0 0 chr4 34403383 34403403 -149885259 + (T)n Simple_repeat Simple_repeat 1 20 0 215 269 0 0 chr4 34403940 34403992 -149884670 + CT-rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr4 34404570 34404591 -149884071 + AT_rich Low_complexity Low_complexity 1 21 0 2069 157 86 5 chr4 34405127 34405523 -149883139 - MSTA LTR MaLR 0 428 1 247 367 47 70 chr4 34406770 34406898 -149881764 + L2 LINE L2 3143 3267 -5 3424 75 5 0 chr4 34407677 34408254 -149880408 - L1PA6 LINE L1 -451 5703 5125 3290 89 0 2 chr4 34408254 34408690 -149879972 + L1PA6 LINE L1 5696 6143 -11 801 266 114 4 chr4 34408932 34409195 -149879467 - LTR41 LTR ERVL -470 303 12 23 68 0 0 chr4 34409626 34409670 -149878992 + AT_rich Low_complexity Low_complexity 1 44 0 29 0 0 0 chr4 34409761 34409790 -149878872 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr4 34409899 34409930 -149878732 + AT_rich Low_complexity Low_complexity 1 31 0 2582 140 0 64 chr4 34412620 34413205 -149875457 - MER1A DNA MER1_type -5 524 1 220 378 12 12 chr4 34413595 34413677 -149874985 + L2 LINE L2 2895 2976 -338 313 230 159 18 chr4 34413780 34413893 -149874769 + L2 LINE L2 3137 3265 -7 4462 165 34 21 chr4 34414291 34415175 -149873487 - L1PB4 LINE L1 -3 6468 5574 * 11703 129 18 62 chr4 34415153 34418154 -149870508 - L1PB4 LINE L1 -3487 2974 1 1323 290 41 13 chr4 34418160 34419113 -149869549 - L1ME LINE L1 -400 5766 4796 1453 181 105 14 chr4 34419120 34419473 -149869189 - L1MA4 LINE L1 -1 6299 5915 594 203 0 8 chr4 34419475 34419593 -149869069 - L1MA10 LINE L1 -9 6325 6209 * 3243 182 45 56 chr4 34419587 34420410 -149868252 - L1MB1 LINE L1 -8 6160 5347 744 277 70 34 chr4 34420409 34420824 -149867838 - L1MB1 LINE L1 -1833 4313 3884 * 1061 311 54 62 chr4 34420859 34421490 -149867172 - MLT1E2 LTR MaLR 0 626 1 719 267 37 32 chr4 34421730 34422105 -149866557 + L1MEc LINE L1 1913 2289 -4107 852 271 39 9 chr4 34422105 34422334 -149866328 + MSTD LTR MaLR 161 396 0 180 0 0 0 chr4 34423269 34423289 -149865373 + (CAT)n Simple_repeat Simple_repeat 1 20 0 285 280 0 0 chr4 34423330 34423405 -149865257 + (AAGTG)n Simple_repeat Simple_repeat 3 77 0 186 143 0 0 chr4 34423798 34423833 -149864829 + (TAA)n Simple_repeat Simple_repeat 2 36 0 28 0 0 0 chr4 34423871 34423899 -149864763 + AT_rich Low_complexity Low_complexity 1 28 0 1727 105 19 8 chr4 34424267 34424534 -149864128 + AluSx SINE Alu 36 305 -7 182 194 0 0 chr4 34424732 34424763 -149863899 + L2 LINE L2 2220 2250 -1064 25 51 0 0 chr4 34424834 34424873 -149863789 + AT_rich Low_complexity Low_complexity 1 39 0 864 345 69 35 chr4 34427509 34428049 -149860613 - L2 LINE L2 0 3313 2756 2165 97 7 3 chr4 34428120 34428419 -149860243 + AluSx SINE Alu 1 300 -12 212 407 12 12 chr4 34428569 34428731 -149859931 + L2 LINE L2 3145 3306 -7 884 228 9 26 chr4 34428949 34429177 -149859485 - MER58A DNA MER1_type 0 224 1 359 228 69 30 chr4 34432303 34432404 -149856258 + MIR SINE MIR 127 231 -31 230 272 130 11 chr4 34432522 34432614 -149856048 + L2 LINE L2 3117 3219 -94 2753 108 49 5 chr4 34433399 34433784 -149854878 + MLT2A1 LTR ERVL 1 408 -36 243 0 0 0 chr4 34433784 34433811 -149854851 + (CA)n Simple_repeat Simple_repeat 2 28 0 2753 108 49 5 chr4 34433811 34433850 -149854812 + MLT2A1 LTR ERVL 408 444 0 1728 147 41 75 chr4 34433885 34434098 -149854564 - THE1C LTR MaLR 0 375 179 5017 67 5 0 chr4 34434098 34434753 -149853909 - L1PA7 LINE L1 -2 6152 5495 1728 147 41 75 chr4 34434753 34434927 -149853735 - THE1C LTR MaLR -196 179 1 1061 242 46 0 chr4 34435187 34435427 -149853235 - MLT1C LTR MaLR -2 465 215 206 0 0 65 chr4 34435995 34436026 -149852636 + (TTTTTA)n Simple_repeat Simple_repeat 4 32 0 27 49 0 0 chr4 34436103 34436144 -149852518 + AT_rich Low_complexity Low_complexity 1 41 0 1723 166 6 35 chr4 34436176 34436490 -149852172 + AluSx SINE Alu 1 305 -7 180 188 43 0 chr4 34437977 34438046 -149850616 + (TA)n Simple_repeat Simple_repeat 2 73 0 2224 118 0 0 chr4 34438094 34438398 -149850264 + AluSx SINE Alu 1 304 -8 1224 218 112 29 chr4 34438783 34439123 -149849539 - MLT1B LTR MaLR -2 388 21 27 0 0 0 chr4 34439512 34439539 -149849123 + AT_rich Low_complexity Low_complexity 1 27 0 1860 53 68 34 chr4 34440670 34440934 -149847728 + AluY SINE Alu 37 309 -2 33 73 0 0 chr4 34442151 34442219 -149846443 + AT_rich Low_complexity Low_complexity 1 68 0 417 287 15 46 chr4 34442219 34442414 -149846248 + L1MD2 LINE L1 4843 5031 -1115 8499 116 12 22 chr4 34442422 34442513 -149846149 + HSMAR1 DNA Mariner 9 99 -1188 1896 150 3 13 chr4 34442513 34442819 -149845843 - AluSx SINE Alu -4 308 6 8499 116 12 22 chr4 34442819 34444019 -149844643 + HSMAR1 DNA Mariner 99 1287 0 1018 260 85 9 chr4 34444028 34445007 -149843655 + L1MD2 LINE L1 5039 6142 -22 25 0 0 0 chr4 34445036 34445061 -149843601 + AT_rich Low_complexity Low_complexity 1 25 0 232 263 88 0 chr4 34446162 34446219 -149842443 + L2 LINE L2 3211 3272 0 264 303 20 0 chr4 34446623 34446722 -149841940 - L1M4 LINE L1 -1563 4583 4483 23 54 0 0 chr4 34446810 34446847 -149841815 + AT_rich Low_complexity Low_complexity 1 37 0 314 307 0 0 chr4 34447411 34447499 -149841163 + MIR SINE MIR 175 262 0 2230 119 0 0 chr4 34447820 34448132 -149840530 + AluSx SINE Alu 1 312 0 571 283 67 0 chr4 34448275 34448455 -149840207 + MIR SINE MIR 50 241 -21 23 54 0 0 chr4 34448903 34448940 -149839722 + AT_rich Low_complexity Low_complexity 1 37 0 24 53 0 0 chr4 34449084 34449122 -149839540 + AT_rich Low_complexity Low_complexity 1 38 0 455 312 83 25 chr4 34449266 34449628 -149839034 - L1M4 LINE L1 -3094 3052 2670 2406 204 2 8 chr4 34449630 34450111 -149838551 - L1PA16 LINE L1 0 6166 5689 2540 138 20 20 chr4 34450112 34450596 -149838066 + L1PA16 LINE L1 5217 5700 -466 2241 78 0 0 chr4 34451784 34452100 -149836562 + AluY SINE Alu 1 316 0 259 200 0 0 chr4 34452260 34452320 -149836342 + L1MC4 LINE L1 6644 6703 -1339 554 298 75 4 chr4 34452723 34452951 -149835711 - MLT1J LTR MaLR -267 244 1 2016 112 3 7 chr4 34452951 34453264 -149835398 - AluSx SINE Alu 0 312 1 233 214 125 0 chr4 34453691 34453747 -149834915 - L2 LINE L2 -61 3252 3190 272 341 96 7 chr4 34453748 34453883 -149834779 - L3 LINE CR1 -5 1572 1426 648 356 40 21 chr4 34454252 34454631 -149834031 - L3 LINE CR1 -151 1426 1041 2335 58 3 29 chr4 34455894 34456205 -149832457 + AluY SINE Alu 1 303 -8 4069 190 7 28 chr4 34456205 34456229 -149832433 + L1PB4 LINE L1 5322 5345 -811 3344 85 22 30 chr4 34456229 34456733 -149831929 - L1PA10 LINE L1 -1 6167 5668 4069 190 7 28 chr4 34456733 34457556 -149831106 + L1PB4 LINE L1 5345 6151 -5 1175 305 77 7 chr4 34457893 34458461 -149830201 + MLT1E LTR MaLR 3 593 0 1384 215 203 6 chr4 34458968 34459317 -149829345 - MER47B DNA MER2_type 0 418 1 1651 187 3 13 chr4 34463460 34463775 -149824887 - AluJo SINE Alu 0 312 1 23 33 0 0 chr4 34464538 34464568 -149824094 + AT_rich Low_complexity Low_complexity 1 30 0 2311 97 0 3 chr4 34464673 34464983 -149823679 - AluSc SINE Alu 0 309 1 28 48 0 0 chr4 34465598 34465640 -149823022 + AT_rich Low_complexity Low_complexity 1 42 0 212 301 186 26 chr4 34465858 34465971 -149822691 + MIR SINE MIR 21 151 -57 721 237 16 31 chr4 34466804 34466998 -149821664 - MER3 DNA MER1_type -12 197 7 241 309 84 91 chr4 34467362 34467950 -149820712 - L2 LINE L2 -524 2790 2205 2285 100 3 0 chr4 34467950 34468260 -149820402 + AluSx SINE Alu 1 311 -1 241 309 84 91 chr4 34468260 34468301 -149820361 - L2 LINE L2 -1109 2205 2165 1972 148 0 0 chr4 34468440 34468737 -149819925 - AluSq SINE Alu -16 297 1 188 146 0 21 chr4 34468775 34468823 -149819839 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 1227 176 0 42 chr4 34470562 34470800 -149817862 + AluJb SINE Alu 83 310 -2 651 21 32 11 chr4 34471797 34471890 -149816772 + (TAGA)n Simple_repeat Simple_repeat 4 98 0 22 0 0 0 chr4 34472242 34472264 -149816398 + AT_rich Low_complexity Low_complexity 1 22 0 29 28 0 0 chr4 34472798 34472834 -149815828 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr4 34473175 34473197 -149815465 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr4 34473421 34473444 -149815218 + AT_rich Low_complexity Low_complexity 1 23 0 1064 133 79 49 chr4 34473596 34473799 -149814863 + Tigger2a DNA MER2_type 5 213 -221 4433 211 19 2 chr4 34473847 34475190 -149813472 + L1PA16 LINE L1 3981 5449 -717 1510 166 100 31 chr4 34475190 34475540 -149813122 - THE1C LTR MaLR 0 375 2 3746 154 52 20 chr4 34475540 34476230 -149812432 + L1PA16 LINE L1 5444 6155 -11 266 314 17 25 chr4 34477922 34478040 -149810622 - MLT1J1 LTR MaLR -329 117 1 24 53 0 0 chr4 34478120 34478158 -149810504 + AT_rich Low_complexity Low_complexity 1 38 0 1035 290 37 47 chr4 34478666 34479070 -149809592 + MLT1E2 LTR MaLR 1 400 -226 676 52 21 0 chr4 34479070 34479166 -149809496 + AluY SINE Alu 204 301 -10 919 224 14 29 chr4 34479189 34479399 -149809263 + MLT1E2 LTR MaLR 414 620 -6 28 29 0 0 chr4 34479956 34479991 -149808671 + AT_rich Low_complexity Low_complexity 1 35 0 256 213 53 27 chr4 34480782 34480857 -149807805 - L1MC4 LINE L1 -1136 6702 6573 2861 13 0 0 chr4 34481522 34481839 -149806823 - AluYb8 SINE Alu -1 317 1 36 0 0 0 chr4 34483016 34483052 -149805610 + AT_rich Low_complexity Low_complexity 1 36 0 435 38 0 0 chr4 34483280 34483333 -149805329 + (TA)n Simple_repeat Simple_repeat 2 54 0 207 329 0 66 chr4 34483508 34483584 -149805078 + L2 LINE L2 3199 3269 -3 404 310 89 71 chr4 34484839 34485564 -149803098 + L1M4 LINE L1 2830 3597 -2549 848 253 146 61 chr4 34485564 34486006 -149802656 + MLT2B1 LTR ERVL 2 489 -31 285 29 0 0 chr4 34486006 34486040 -149802622 + (CA)n Simple_repeat Simple_repeat 1 34 0 848 253 146 61 chr4 34486040 34486075 -149802587 + MLT2B1 LTR ERVL 489 520 0 404 310 89 71 chr4 34486075 34486269 -149802393 + L1M4 LINE L1 3597 3786 -2360 2618 265 37 39 chr4 34486284 34486839 -149801823 + L1MC4 LINE L1 7004 7559 -483 1787 149 0 31 chr4 34486839 34487127 -149801535 + AluSg SINE Alu 1 279 -31 207 0 0 0 chr4 34487130 34487153 -149801509 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2618 265 37 39 chr4 34487153 34487632 -149801030 + L1MC4 LINE L1 7561 8040 -2 1738 54 0 14 chr4 34487933 34488187 -149800475 + AluY SINE Alu 66 316 0 1927 194 48 139 chr4 34488338 34488941 -149799721 - MER21A LTR ERV1 -25 906 380 2419 70 0 10 chr4 34488941 34489255 -149799407 + AluY SINE Alu 1 311 0 1927 194 48 139 chr4 34489255 34489383 -149799279 - MER21A LTR ERV1 -551 380 242 905 176 16 106 chr4 34489383 34489628 -149799034 + LTR9 LTR ERV1 1 223 -389 667 68 0 0 chr4 34489628 34489716 -149798946 - AluSg/x SINE Alu -13 299 212 281 376 15 8 chr4 34489746 34489879 -149798783 + MER61E LTR ERV1 211 344 -225 * 700 216 112 43 chr4 34489871 34490149 -149798513 + LTR9 LTR ERV1 316 612 0 729 174 0 0 chr4 34490150 34490265 -149798397 - MER39 LTR ERV1 -334 373 259 547 124 7 163 chr4 34490240 34490393 -149798269 - MER21A LTR ERV1 -733 198 70 * 384 279 21 20 chr4 34490510 34490668 -149797994 + L1ME3 LINE L1 5973 6138 -24 21 0 0 0 chr4 34490944 34490965 -149797697 + AT_rich Low_complexity Low_complexity 1 21 0 2065 74 0 4 chr4 34491969 34492239 -149796423 - AluY SINE Alu -6 305 37 2155 201 111 18 chr4 34493364 34493831 -149794831 + MLT2B3 LTR ERVL 1 520 -34 387 0 0 0 chr4 34493831 34493874 -149794788 + (TCTA)n Simple_repeat Simple_repeat 3 45 0 2155 201 111 18 chr4 34493874 34493913 -149794749 + MLT2B3 LTR ERVL 520 554 0 436 163 0 0 chr4 34494443 34494523 -149794139 - MADE1 DNA Mariner 0 80 1 18338 118 8 14 chr4 34495585 34498858 -149789804 + L1PA7 LINE L1 727 3999 -2462 9674 103 12 1 chr4 34498866 34501076 -149787586 + L1PA7 LINE L1 4243 6469 0 23 54 0 0 chr4 34501920 34501957 -149786705 + AT_rich Low_complexity Low_complexity 1 37 0 224 71 48 0 chr4 34503438 34503480 -149785182 + T-rich Low_complexity Low_complexity 2 45 0 1540 165 4 0 chr4 34503506 34503749 -149784913 - AluSx SINE Alu -66 246 3 22 0 0 0 chr4 34503760 34503782 -149784880 + AT_rich Low_complexity Low_complexity 1 22 0 299 225 25 0 chr4 34505614 34505694 -149782968 + (TA)n Simple_repeat Simple_repeat 2 83 0 12808 170 25 6 chr4 34505694 34508066 -149780596 + Tigger1 DNA MER2_type 1 2418 0 32 43 0 0 chr4 34508384 34508430 -149780232 + AT_rich Low_complexity Low_complexity 1 46 0 32 26 0 0 chr4 34509907 34509946 -149778716 + AT_rich Low_complexity Low_complexity 1 39 0 1379 210 0 41 chr4 34510550 34510880 -149777782 + AluJo SINE Alu 4 321 0 1778 167 7 0 chr4 34511003 34511309 -149777353 + AluSx SINE Alu 1 308 0 270 418 46 8 chr4 34511983 34512222 -149776440 + MIR SINE MIR 3 250 -12 1769 88 0 0 chr4 34512329 34512557 -149776105 - AluSg/x SINE Alu -4 306 79 180 111 0 0 chr4 34513201 34513228 -149775434 + (T)n Simple_repeat Simple_repeat 1 27 0 204 418 11 0 chr4 34513601 34513692 -149774970 - L2 LINE L2 -331 2982 2891 1096 238 43 68 chr4 34514159 34514481 -149774181 - MLT1D LTR MaLR -13 492 163 2218 108 3 0 chr4 34514481 34514776 -149773886 + AluSg SINE Alu 1 296 -14 1096 238 43 68 chr4 34514776 34514802 -149773860 - MLT1D LTR MaLR -342 163 138 240 35 0 0 chr4 34514802 34514831 -149773831 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 1096 238 43 68 chr4 34514831 34515005 -149773657 - MLT1D LTR MaLR -367 138 1 202 154 0 26 chr4 34515058 34515097 -149773565 + (TAA)n Simple_repeat Simple_repeat 2 39 0 223 351 9 35 chr4 34516264 34516378 -149772284 - L2 LINE L2 -7 3265 3155 202 345 51 51 chr4 34516992 34517046 -149771616 + L2 LINE L2 926 979 -2335 2032 103 23 20 chr4 34517046 34517347 -149771315 - AluSq SINE Alu -11 302 1 202 345 51 51 chr4 34517347 34517474 -149771188 + L2 LINE L2 979 1110 -2204 225 0 0 0 chr4 34517474 34517499 -149771163 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 202 345 51 51 chr4 34517499 34517513 -149771149 + L2 LINE L2 1109 1122 -2192 306 237 93 21 chr4 34517895 34517992 -149770670 - L1M4 LINE L1 -3008 3138 3035 235 329 0 24 chr4 34518353 34518435 -149770227 - L2 LINE L2 -746 2568 2489 2463 171 17 28 chr4 34518528 34518997 -149769665 - MER31A LTR ERV1 0 485 22 391 200 13 0 chr4 34519000 34519075 -149769587 + MER31A LTR ERV1 410 485 0 1711 142 4 8 chr4 34519626 34519886 -149768776 + AluSq SINE Alu 2 260 -53 243 0 0 0 chr4 34519912 34519939 -149768723 + (CA)n Simple_repeat Simple_repeat 2 28 0 2319 138 45 24 chr4 34519955 34520374 -149768288 + MSTA LTR MaLR 1 428 0 26 50 0 0 chr4 34520488 34520528 -149768134 + AT_rich Low_complexity Low_complexity 1 40 0 568 278 123 71 chr4 34520528 34520952 -149767710 - MLT1H LTR MaLR 0 549 104 23 0 0 0 chr4 34520988 34521011 -149767651 + AT_rich Low_complexity Low_complexity 1 23 0 23 86 0 0 chr4 34521293 34521351 -149767311 + AT_rich Low_complexity Low_complexity 1 58 0 2077 184 29 24 chr4 34522217 34522635 -149766027 + MSTB LTR MaLR 1 420 -6 1201 230 93 93 chr4 34522696 34523284 -149765378 + MLT1E2 LTR MaLR 59 622 -4 1452 188 63 28 chr4 34524613 34524975 -149763687 - THE1C LTR MaLR 0 375 1 8289 205 36 39 chr4 34524981 34526560 -149762102 - THE1C-int LTR MaLR -6 1574 1 478 129 0 0 chr4 34526560 34526630 -149762032 - THE1C LTR MaLR 0 375 306 1079 169 11 0 chr4 34526651 34526835 -149761827 - THE1C LTR MaLR -187 188 3 2231 223 39 4 chr4 34527565 34528058 -149760604 - LTR53 LTR ERVL 0 519 10 236 191 96 78 chr4 34528530 34528645 -149760017 + MIR SINE MIR 105 221 -41 1691 132 114 0 chr4 34528832 34529104 -149759558 + AluSx SINE Alu 1 303 -9 372 103 13 39 chr4 34529129 34529207 -149759455 + (GAAA)n Simple_repeat Simple_repeat 1 76 0 553 333 98 20 chr4 34529649 34530100 -149758562 - MLT1H1 LTR MaLR -33 522 37 5548 157 27 12 chr4 34530897 34531971 -149756691 - L1MA4A LINE L1 -6 6297 5207 313 279 0 0 chr4 34532521 34532600 -149756062 + L1MC4 LINE L1 6624 6702 -1340 330 154 39 0 chr4 34532605 34532683 -149755979 + (TA)n Simple_repeat Simple_repeat 1 81 0 321 311 46 89 chr4 34532867 34533282 -149755380 + L1M2 LINE L1 1008 1404 -5445 2356 72 7 0 chr4 34533848 34534141 -149754521 - AluY SINE Alu -16 295 1 1561 201 3 26 chr4 34535280 34535588 -149753074 - AluJo SINE Alu -11 301 1 271 374 50 0 chr4 34536079 34536258 -149752404 - MIR SINE MIR -1 261 74 2410 66 3 3 chr4 34536659 34536964 -149751698 + AluY SINE Alu 1 305 -6 999 228 50 0 chr4 34536964 34537205 -149751457 - L1MA6 LINE L1 -14 6286 6034 648 250 11 22 chr4 34537199 34537383 -149751279 - L1M2a LINE L1 -6984 184 3 * 240 319 57 43 chr4 34537569 34537710 -149750952 + MLT1I LTR MaLR 1 143 -266 728 278 27 36 chr4 34538740 34538963 -149749699 + MER58A DNA MER1_type 2 222 -2 324 303 5 96 chr4 34538998 34539216 -149749446 + MIR SINE MIR 63 260 -2 219 139 0 0 chr4 34539317 34539353 -149749309 + (CA)n Simple_repeat Simple_repeat 1 36 0 2746 28 0 3 chr4 34539482 34539806 -149748856 + L1PA2 LINE L1 5827 6149 -6 282 270 0 14 chr4 34541699 34541773 -149746889 + MER94 DNA DNA 39 111 -23 1418 103 0 77 chr4 34542654 34542904 -149745758 + L1PA13 LINE L1 5919 6150 -13 2688 35 0 0 chr4 34542904 34543214 -149745448 + AluY SINE Alu 1 310 -1 801 248 57 30 chr4 34544848 34545078 -149743584 - MIR SINE MIR -26 236 1 1899 103 60 21 chr4 34545702 34545983 -149742679 - AluSx SINE Alu -12 300 9 192 77 0 0 chr4 34547922 34547948 -149740714 + (CA)n Simple_repeat Simple_repeat 2 27 0 25 51 0 0 chr4 34548306 34548345 -149740317 + AT_rich Low_complexity Low_complexity 1 39 0 1211 123 0 0 chr4 34548377 34548548 -149740114 + AluSp SINE Alu 137 307 -6 56 33 0 0 chr4 34548947 34549007 -149739655 + AT_rich Low_complexity Low_complexity 1 60 0 10281 65 6 0 chr4 34549107 34550379 -149738283 - HERVL LTR ERVL -684 4970 3691 470 114 71 0 chr4 34550379 34550449 -149738213 - THE1B LTR MaLR -289 75 1 10922 115 13 0 chr4 34550449 34552009 -149736653 - THE1B-int LTR MaLR 0 1580 1 2152 142 19 27 chr4 34552009 34552376 -149736286 - THE1B LTR MaLR 0 364 1 290 242 141 31 chr4 34552395 34552523 -149736139 + L1MCa LINE L1 190 331 -6233 * 574 280 110 79 chr4 34552496 34552850 -149735812 + L1MCa LINE L1 201 565 -5480 1378 240 36 65 chr4 34552961 34553763 -149734899 + L1MCa LINE L1 570 1367 -4852 210 279 15 15 chr4 34554478 34554546 -149734116 + L2 LINE L2 3014 3081 -191 22 35 0 0 chr4 34554706 34554735 -149733927 + AT_rich Low_complexity Low_complexity 1 29 0 199 278 74 65 chr4 34555351 34555459 -149733203 + MIR SINE MIR 122 230 -32 299 293 45 45 chr4 34555652 34555785 -149732877 + MIR SINE MIR 2 134 -128 194 344 16 0 chr4 34555803 34555864 -149732798 + L2 LINE L2 3251 3312 -1 32 0 0 0 chr4 34556037 34556069 -149732593 + AT_rich Low_complexity Low_complexity 1 32 0 2002 126 67 19 chr4 34558440 34558813 -149729849 - L1MA4 LINE L1 -381 5919 5529 27 62 0 0 chr4 34558984 34559032 -149729630 + AT_rich Low_complexity Low_complexity 1 48 0 1137 152 0 0 chr4 34559259 34559437 -149729225 + AluSg/x SINE Alu 134 311 -1 1915 188 38 2 chr4 34560071 34560471 -149728191 + L1MA4A LINE L1 5884 6297 -6 352 309 124 9 chr4 34560925 34561142 -149727520 + MIR SINE MIR 20 261 -1 1045 241 67 19 chr4 34561179 34561494 -149727168 - MER58B DNA MER1_type -8 333 4 410 374 19 7 chr4 34561742 34561897 -149726765 + L2 LINE L2 3116 3272 0 205 244 0 0 chr4 34563900 34563945 -149724717 + (CA)n Simple_repeat Simple_repeat 2 46 0 2146 73 4 0 chr4 34565126 34565422 -149723240 + AluY SINE Alu 9 305 0 2189 84 0 20 chr4 34566288 34566587 -149722075 - AluSc SINE Alu -11 298 6 197 389 43 32 chr4 34566942 34567127 -149721535 + MIR3 SINE MIR 17 203 -5 333 270 112 56 chr4 34568104 34568282 -149720380 - MLT1J LTR MaLR -304 207 20 1062 216 30 17 chr4 34568562 34568683 -149719979 + AluSx SINE Alu 3 121 -181 387 0 0 0 chr4 34568683 34568726 -149719936 + (TTAA)n Simple_repeat Simple_repeat 3 45 0 1062 216 30 17 chr4 34568726 34568900 -149719762 + AluSx SINE Alu 121 302 0 212 310 53 71 chr4 34569523 34569636 -149719026 + L2 LINE L2 1078 1188 -2126 439 353 148 36 chr4 34569742 34570908 -149717754 + L2 LINE L2 1367 2662 -652 286 385 61 29 chr4 34570923 34571201 -149717461 - MLT1I LTR MaLR -6 403 117 2175 60 14 3 chr4 34572478 34572761 -149715901 - AluY SINE Alu -25 286 1 213 352 0 29 chr4 34572763 34572868 -149715794 - MIR SINE MIR -20 242 141 778 271 106 41 chr4 34573243 34573657 -149715005 + MSTB2 LTR MaLR 17 457 0 26 0 0 0 chr4 34573992 34574018 -149714644 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr4 34574045 34574067 -149714595 + AT_rich Low_complexity Low_complexity 1 22 0 204 298 0 24 chr4 34574711 34574795 -149713867 + T-rich Low_complexity Low_complexity 1 82 0 281 335 85 30 chr4 34575045 34575245 -149713417 - MIR SINE MIR 0 262 52 1618 227 12 9 chr4 34575610 34575949 -149712713 - MER2 DNA MER2_type 0 345 6 345 82 0 0 chr4 34575952 34576001 -149712661 + (TG)n Simple_repeat Simple_repeat 2 50 0 24 0 0 0 chr4 34577944 34577968 -149710694 + AT_rich Low_complexity Low_complexity 1 24 0 57 71 0 0 chr4 34578068 34578181 -149710481 + AT_rich Low_complexity Low_complexity 1 113 0 25 31 0 0 chr4 34578409 34578441 -149710221 + AT_rich Low_complexity Low_complexity 1 32 0 1524 252 20 24 chr4 34578548 34579008 -149709654 + MER89 LTR ERV1 1 557 -2 2672 146 2 7 chr4 34579173 34579619 -149709043 - MLT2A1 LTR ERVL 0 444 1 4694 96 5 11 chr4 34579619 34580276 -149708386 - HERVL-A1 LTR ERVL 0 5654 5002 2344 65 0 3 chr4 34580451 34580741 -149707921 - AluY SINE Alu -22 289 1 601 150 14 7 chr4 34580755 34580902 -149707760 + CT-rich Low_complexity Low_complexity 4 151 0 21 82 0 0 chr4 34582327 34582376 -149706286 + AT_rich Low_complexity Low_complexity 1 49 0 21 57 0 0 chr4 34582479 34582514 -149706148 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr4 34582727 34582749 -149705913 + AT_rich Low_complexity Low_complexity 1 22 0 180 179 0 0 chr4 34583058 34583097 -149705565 + (ATG)n Simple_repeat Simple_repeat 2 40 0 22 0 0 0 chr4 34583427 34583449 -149705213 + AT_rich Low_complexity Low_complexity 1 22 0 242 314 98 0 chr4 34583752 34583854 -149704808 + L2 LINE L2 3160 3271 -1 461 284 36 10 chr4 34583919 34584113 -149704549 - Charlie2 DNA MER1_type 0 2862 2664 2046 90 10 51 chr4 34584206 34584518 -149704144 - AluY SINE Alu -12 299 1 249 301 80 35 chr4 34584523 34584636 -149704026 - L2 LINE L2 0 3313 3196 1003 263 53 56 chr4 34585271 34585822 -149702840 + LTR27 LTR ERV1 7 1231 -139 4439 147 53 19 chr4 34586218 34587018 -149701644 - MER4D LTR ERV1 -20 883 48 3883 152 17 20 chr4 34587416 34588114 -149700548 - MER50 LTR ERV1 -24 710 15 396 0 0 0 chr4 34589339 34589383 -149699279 + (TG)n Simple_repeat Simple_repeat 2 45 0 515 290 70 83 chr4 34589524 34589739 -149698923 - L1ME LINE L1 -5281 789 573 1489 164 3 76 chr4 34589739 34590043 -149698619 - AluJo SINE Alu -26 286 5 515 290 70 83 chr4 34590043 34590355 -149698307 - L1ME LINE L1 -5497 573 269 1375 196 39 4 chr4 34590516 34590796 -149697866 + AluJo SINE Alu 1 290 -22 475 133 12 0 chr4 34592149 34592232 -149696430 + GA-rich Low_complexity Low_complexity 3 86 0 191 149 30 30 chr4 34594085 34594152 -149694510 + (TA)n Simple_repeat Simple_repeat 1 67 0 243 286 22 0 chr4 34595085 34595176 -149693486 + (CATA)n Simple_repeat Simple_repeat 3 95 0 23 33 0 0 chr4 34595306 34595336 -149693326 + AT_rich Low_complexity Low_complexity 1 30 0 180 77 0 0 chr4 34595724 34595750 -149692912 + (CA)n Simple_repeat Simple_repeat 2 27 0 297 0 0 0 chr4 34595787 34595820 -149692842 + (TA)n Simple_repeat Simple_repeat 1 33 0 23 78 0 0 chr4 34596232 34596283 -149692379 + AT_rich Low_complexity Low_complexity 1 51 0 4248 81 2 0 chr4 34596320 34596885 -149691777 - L1PA7 LINE L1 -1 6153 5588 887 226 65 4 chr4 34597004 34597252 -149691410 + L1P LINE L1 4871 5133 -1013 1443 139 37 8 chr4 34597252 34597497 -149691165 + L1PA15 LINE L1 5912 6163 -2 1397 269 91 38 chr4 34597497 34598492 -149690170 + L1MEc LINE L1 734 1780 -4616 26 30 0 0 chr4 34599290 34599323 -149689339 + AT_rich Low_complexity Low_complexity 1 33 0 3287 111 59 18 chr4 34599665 34600240 -149688422 + MER51C LTR ERV1 1 640 0 22 0 0 0 chr4 34600511 34600533 -149688129 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr4 34601198 34601221 -149687441 + AT_rich Low_complexity Low_complexity 1 23 0 2291 64 0 10 chr4 34601578 34601873 -149686789 + AluY SINE Alu 1 292 -19 595 287 44 40 chr4 34602179 34602430 -149686232 - MIR SINE MIR -4 258 7 195 129 0 0 chr4 34602608 34602639 -149686023 + (CATATA)n Simple_repeat Simple_repeat 5 35 0 33 0 0 0 chr4 34603008 34603041 -149685621 + AT_rich Low_complexity Low_complexity 1 33 0 350 21 21 0 chr4 34603353 34603400 -149685262 + (CA)n Simple_repeat Simple_repeat 2 49 0 1606 233 125 25 chr4 34603585 34604016 -149684646 + MLT2B1 LTR ERVL 1 484 -36 207 0 0 0 chr4 34604016 34604039 -149684623 + (TA)n Simple_repeat Simple_repeat 2 24 0 1606 233 125 25 chr4 34604039 34604080 -149684582 + MLT2B1 LTR ERVL 484 520 0 23 33 0 0 chr4 34604629 34604659 -149684003 + AT_rich Low_complexity Low_complexity 1 30 0 2056 136 0 0 chr4 34605409 34605717 -149682945 + AluSg SINE Alu 1 308 -2 309 26 0 0 chr4 34607204 34607242 -149681420 + (CA)n Simple_repeat Simple_repeat 1 38 0 25 75 0 0 chr4 34607426 34607479 -149681183 + AT_rich Low_complexity Low_complexity 1 53 0 1389 51 0 61 chr4 34607560 34607797 -149680865 + AluY SINE Alu 98 322 0 256 298 12 48 chr4 34607887 34607971 -149680691 + L2 LINE L2 3184 3264 -8 22 35 0 0 chr4 34608066 34608095 -149680567 + AT_rich Low_complexity Low_complexity 1 29 0 1997 125 0 7 chr4 34608898 34609194 -149679468 - AluSx SINE Alu -16 296 3 7415 34 3 0 chr4 34609453 34610823 -149677839 - L1PA4 LINE L1 0 6155 4783 228 188 0 167 chr4 34610959 34611055 -149677607 - MADE1 DNA Mariner 0 80 1 1055 130 4 141 chr4 34611174 34611443 -149677219 - L1MA10 LINE L1 0 6334 6103 3014 160 18 7 chr4 34611580 34612131 -149676531 + L1 LINE L1 3903 4459 -1687 266 179 107 0 chr4 34612609 34612665 -149675997 - MIR SINE MIR -12 250 189 29348 116 11 85 chr4 34614050 34616885 -149671777 + L1PA7 LINE L1 13 3057 -3097 230 0 33 0 chr4 34616885 34616915 -149671747 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 29348 116 11 85 chr4 34616915 34620731 -149667931 + L1PA7 LINE L1 3057 6154 0 30 27 0 0 chr4 34621784 34621821 -149666841 + AT_rich Low_complexity Low_complexity 1 37 0 2292 204 60 49 chr4 34621875 34622503 -149666159 - MER92B LTR ERV1 0 636 2 283 276 29 9 chr4 34623077 34623182 -149665480 - LTR33 LTR ERVL 0 521 415 451 280 110 16 chr4 34623319 34623501 -149665161 - LTR33 LTR ERVL -311 210 12 1967 151 3 3 chr4 34623638 34623943 -149664719 - AluSx SINE Alu -2 310 6 22 0 0 0 chr4 34624764 34624786 -149663876 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr4 34625070 34625100 -149663562 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr4 34625243 34625271 -149663391 + AT_rich Low_complexity Low_complexity 1 28 0 520 417 21 3 chr4 34627752 34628078 -149660584 + L2 LINE L2 2465 2796 -518 1121 43 0 0 chr4 34628079 34628218 -149660444 + L1PA6 LINE L1 6016 6154 0 23 0 0 0 chr4 34628539 34628562 -149660100 + AT_rich Low_complexity Low_complexity 1 23 0 228 331 30 30 chr4 34628617 34628750 -149659912 + L2 LINE L2 3139 3271 -42 1162 257 42 86 chr4 34628754 34628800 -149659862 - MLT2B1 LTR ERVL 0 520 474 279 0 0 0 chr4 34628800 34628831 -149659831 + (CA)n Simple_repeat Simple_repeat 2 32 0 1162 257 42 86 chr4 34628831 34629328 -149659334 - MLT2B1 LTR ERVL -46 474 1 273 307 22 22 chr4 34629365 34629502 -149659160 - MIR SINE MIR -35 227 91 290 294 124 73 chr4 34630581 34630952 -149657710 + MLT1H LTR MaLR 147 536 -13 180 152 0 0 chr4 34631071 34631104 -149657558 + T-rich Low_complexity Low_complexity 1 33 0 33 0 0 0 chr4 34631414 34631447 -149657215 + AT_rich Low_complexity Low_complexity 1 33 0 851 208 0 58 chr4 34631742 34631949 -149656713 + AluJo SINE Alu 92 286 -26 24 77 0 0 chr4 34631975 34632027 -149656635 + AT_rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr4 34632098 34632119 -149656543 + AT_rich Low_complexity Low_complexity 1 21 0 13778 87 24 17 chr4 34632582 34634823 -149653839 - L1P2 LINE L1 -595 5559 3300 2396 192 70 26 chr4 34635842 34636341 -149652321 + MER44D DNA MER2_type 30 605 0 1909 132 37 0 chr4 34636467 34636763 -149651899 - AluSc SINE Alu -2 307 1 408 254 107 0 chr4 34637274 34637443 -149651219 + MER53 DNA DNA 1 187 -2 633 138 37 9 chr4 34637946 34638055 -149650607 + L1MA3 LINE L1 16 127 -7438 13370 175 36 30 chr4 34638059 34640163 -149648499 + L1MA3 LINE L1 1099 3190 -4534 1069 188 164 40 chr4 34640163 34640461 -149648201 + AluSx SINE Alu 4 332 0 13370 175 36 30 chr4 34640461 34644952 -149643710 + L1MA3 LINE L1 3190 7724 0 22 0 0 0 chr4 34645120 34645142 -149643520 + AT_rich Low_complexity Low_complexity 1 22 0 498 146 0 0 chr4 34645309 34645391 -149643271 - L1PB4 LINE L1 -7 6149 6068 3413 151 31 15 chr4 34645535 34646146 -149642516 - L1MA8 LINE L1 -318 5973 5353 * 7281 33 6 1 chr4 34646142 34647072 -149641590 - L1PA3 LINE L1 0 6155 5254 1738 14 0 9 chr4 34647078 34647293 -149641369 + L1PA3 LINE L1 5014 5226 -920 982 203 31 0 chr4 34647291 34647513 -149641149 - L1MA8 LINE L1 -779 5367 5139 * 875 121 0 0 chr4 34647523 34647655 -149641007 + L1MA8 LINE L1 5842 5973 -318 368 139 13 0 chr4 34647692 34647771 -149640891 + (TA)n Simple_repeat Simple_repeat 2 81 0 1483 200 71 3 chr4 34648101 34648426 -149640236 + MER7A DNA MER2_type 1 345 -1 487 174 0 0 chr4 34648427 34648525 -149640137 + L1 LINE L1 4739 4836 -1310 854 277 21 93 chr4 34648807 34649193 -149639469 - MLT1A1 LTR MaLR -7 358 1 770 269 51 78 chr4 34649196 34650193 -149638469 - L1ME LINE L1 -4594 1667 664 2347 89 0 0 chr4 34650194 34650497 -149638165 - AluY SINE Alu -8 303 1 453 335 72 24 chr4 34650519 34650812 -149637850 + L1ME LINE L1 715 1021 -5049 348 344 52 0 chr4 34650876 34651030 -149637632 - LTR16A LTR ERVL -21 429 268 * 376 346 51 0 chr4 34651027 34651183 -149637479 - LTR16A LTR ERVL -21 429 266 1076 326 69 31 chr4 34651437 34652335 -149636327 - HERV16 LTR ERVL -2731 2265 1267 272 322 64 38 chr4 34652416 34652652 -149636010 - HERV16 LTR ERVL -3836 1160 919 1816 137 0 10 chr4 34652832 34653131 -149635531 + L1PA13 LINE L1 5866 6161 -2 429 325 72 13 chr4 34653200 34653437 -149635225 - HERV16 LTR ERVL -4372 624 374 1665 278 68 46 chr4 34653633 34654818 -149633844 + L1M4 LINE L1 3710 4921 -1225 224 265 128 43 chr4 34655491 34655608 -149633054 + L2 LINE L2 3141 3267 -5 724 88 79 0 chr4 34655747 34655861 -149632801 + AluY SINE Alu 1 123 -188 2387 67 0 3 chr4 34655865 34656177 -149632485 + AluY SINE Alu 1 311 0 24 0 0 0 chr4 34656362 34656386 -149632276 + AT_rich Low_complexity Low_complexity 1 24 0 557 265 20 69 chr4 34656541 34656617 -149632045 - L1ME1 LINE L1 -20 6146 6068 1976 134 7 0 chr4 34656617 34656915 -149631747 + AluSx SINE Alu 1 300 -12 557 265 20 69 chr4 34656915 34657042 -149631620 - L1ME1 LINE L1 -98 6068 5953 1895 165 51 65 chr4 34657442 34657933 -149630729 - MER31A LTR ERV1 -1 484 1 1708 173 0 0 chr4 34658523 34658829 -149629833 - AluJb SINE Alu 0 306 1 402 370 34 0 chr4 34659142 34659261 -149629401 + L2 LINE L2 3149 3271 -1 21 36 0 0 chr4 34659374 34659402 -149629260 + AT_rich Low_complexity Low_complexity 1 28 0 1666 147 14 7 chr4 34660057 34660379 -149628283 + AluSx SINE Alu 1 324 0 361 319 64 36 chr4 34660775 34661026 -149627636 - MER90 LTR ERV1 0 614 357 2225 93 14 0 chr4 34661036 34661327 -149627335 - AluSp SINE Alu -18 295 1 806 181 12 54 chr4 34661328 34661494 -149627168 - THE1C LTR MaLR -216 159 1 1712 170 13 28 chr4 34661495 34661813 -149626849 + MSTB LTR MaLR 114 426 0 369 275 53 30 chr4 34665444 34665575 -149623087 + MIR SINE MIR 90 223 -39 191 281 56 22 chr4 34665810 34665899 -149622763 + MIR SINE MIR 104 195 -67 26 0 0 0 chr4 34666108 34666134 -149622528 + AT_rich Low_complexity Low_complexity 1 26 0 285 344 96 32 chr4 34666226 34666383 -149622279 - MIR3 SINE MIR -17 191 25 28 61 0 0 chr4 34666738 34666787 -149621875 + AT_rich Low_complexity Low_complexity 1 49 0 940 259 44 4 chr4 34667157 34667408 -149621254 - MER110A LTR ERV1 -168 300 40 291 75 0 0 chr4 34668072 34668112 -149620550 - MADE1 DNA Mariner -39 41 2 209 253 92 58 chr4 34668276 34668363 -149620299 - L2 LINE L2 -3 3310 3221 199 372 23 69 chr4 34668437 34668655 -149620007 - L2 LINE L2 -400 2914 2707 1645 169 19 24 chr4 34668685 34669154 -149619508 + L1MA8 LINE L1 5058 5525 -743 548 162 10 20 chr4 34669156 34669255 -149619407 + MER4A LTR ERV1 1 98 -566 1335 209 81 26 chr4 34669255 34669638 -149619024 + MER4A LTR ERV1 261 664 0 12527 117 160 118 chr4 34669641 34670693 -149617969 + MER4A-int LTR ERV1 1 1007 -5591 225 108 0 0 chr4 34670693 34670730 -149617932 + (TG)n Simple_repeat Simple_repeat 2 38 0 12527 117 160 118 chr4 34670730 34673214 -149615448 + MER4A-int LTR ERV1 1007 3686 -2912 * 16251 113 40 17 chr4 34673208 34675142 -149613520 + MER4A-int LTR ERV1 3837 5851 -747 2307 114 0 0 chr4 34675142 34675450 -149613212 - AluSx SINE Alu -4 308 1 16251 113 40 17 chr4 34675450 34676213 -149612449 + MER4A-int LTR ERV1 5851 6595 -3 625 120 0 20 chr4 34676220 34676320 -149612342 + MER4A LTR ERV1 1 98 -566 1620 167 20 22 chr4 34676320 34676666 -149611996 + MER4A LTR ERV1 261 664 0 3130 199 8 7 chr4 34676667 34677284 -149611378 + L1MA8 LINE L1 5527 6144 -147 254 148 37 0 chr4 34677304 34677358 -149611304 + MSTB1 LTR MaLR 55 110 -322 377 125 0 0 chr4 34677363 34677419 -149611243 + L1MB4 LINE L1 6074 6129 -51 2073 240 33 49 chr4 34677493 34678173 -149610489 + L1MD3 LINE L1 6878 7772 -223 2122 184 36 5 chr4 34678173 34678586 -149610076 + MSTB LTR MaLR 1 426 0 2073 240 33 49 chr4 34678586 34678799 -149609863 + L1MD3 LINE L1 7772 7987 -8 1637 108 0 0 chr4 34679767 34680016 -149608646 - L1P3 LINE L1 -5076 1385 1137 701 80 0 0 chr4 34680014 34680102 -149608560 - L1P3 LINE L1 -6048 413 326 * 863 148 0 0 chr4 34680189 34680317 -149608345 + FLAM_C SINE Alu 1 128 -5 338 219 0 0 chr4 34680338 34680411 -149608251 + AluJ/FRAM SINE Alu 228 300 -2 245 146 0 60 chr4 34681058 34681125 -149607537 - MLT2B1 LTR ERVL 0 554 458 210 191 0 0 chr4 34681125 34681167 -149607495 + (CATA)n Simple_repeat Simple_repeat 3 44 0 773 263 110 0 chr4 34681181 34681390 -149607272 - MER46A DNA MER2_type -3 233 2 2083 212 58 7 chr4 34681391 34681839 -149606823 - MLT2B1 LTR ERVL -45 475 5 28 0 0 0 chr4 34682196 34682224 -149606438 + AT_rich Low_complexity Low_complexity 1 28 0 262 211 0 0 chr4 34682308 34682365 -149606297 + L1MA4 LINE L1 6203 6259 -41 240 347 113 8 chr4 34682398 34682522 -149606140 - MIR SINE MIR -112 150 14 345 74 19 0 chr4 34682626 34682680 -149605982 - L1PB2 LINE L1 -2 6149 6095 3701 164 21 46 chr4 34682780 34683401 -149605261 - L1PB2 LINE L1 -219 5932 5350 15827 32 4 0 chr4 34683401 34686092 -149602570 - L1PA4 LINE L1 -1 6154 3458 3701 164 21 46 chr4 34686092 34686626 -149602036 - L1PB2 LINE L1 -801 5350 4804 5792 217 23 6 chr4 34686727 34688145 -149600517 - L1PB2 LINE L1 -1917 4229 2789 2493 67 0 3 chr4 34688556 34688868 -149599794 + AluY SINE Alu 1 311 0 186 259 52 17 chr4 34689237 34689295 -149599367 + L2 LINE L2 2120 2179 -1135 27 29 0 0 chr4 34692299 34692333 -149596329 + AT_rich Low_complexity Low_complexity 1 34 0 1749 318 65 32 chr4 34692392 34693386 -149595276 + L2 LINE L2 1704 2730 -584 766 212 0 24 chr4 34693405 34693570 -149595092 - FRAM SINE Alu -12 164 4 549 342 76 16 chr4 34693575 34694062 -149594600 + L2 LINE L2 2746 3258 -55 22 35 0 0 chr4 34695810 34695839 -149592823 + AT_rich Low_complexity Low_complexity 1 29 0 1477 239 43 27 chr4 34696200 34696644 -149592018 + MLT1D LTR MaLR 53 503 -2 2036 115 0 38 chr4 34697083 34697396 -149591266 + AluSx SINE Alu 1 301 -11 191 333 81 11 chr4 34697409 34697496 -149591166 - L2 LINE L2 -21 3251 3159 1930 39 0 9 chr4 34698049 34698325 -149590337 + AluY SINE Alu 55 328 0 194 394 41 12 chr4 34698488 34698658 -149590004 + MIR SINE MIR 83 257 -5 1046 159 5 10 chr4 34699025 34699220 -149589442 - L1 LINE L1 -2337 3809 3616 3525 117 2 2 chr4 34699221 34699773 -149588889 + L1PB1 LINE L1 5231 5782 -369 236 254 14 14 chr4 34699781 34699852 -149588810 + (TA)n Simple_repeat Simple_repeat 2 72 0 1927 151 5 42 chr4 34699854 34700237 -149588425 + L1PB1 LINE L1 5783 6151 0 3027 159 139 0 chr4 34700378 34700976 -149587686 - Tigger1 DNA MER2_type -1 2417 1737 323 125 0 0 chr4 34700980 34701028 -149587634 - Alu SINE Alu -11 291 244 39 74 0 0 chr4 34701537 34701618 -149587044 + AT_rich Low_complexity Low_complexity 1 81 0 669 109 6 170 chr4 34701926 34702091 -149586571 - MER20 DNA MER1_type -81 138 1 242 235 17 113 chr4 34702364 34702479 -149586183 + L1ME4a LINE L1 5491 5594 -527 343 261 29 29 chr4 34702536 34702674 -149585988 + L1ME4a LINE L1 5797 5934 -187 252 0 0 0 chr4 34702767 34702795 -149585867 + (TC)n Simple_repeat Simple_repeat 1 28 0 216 184 0 0 chr4 34703133 34703171 -149585491 + (TG)n Simple_repeat Simple_repeat 1 38 0 208 278 250 0 chr4 34703449 34703521 -149585141 + MIR SINE MIR 152 241 -21 1906 125 18 0 chr4 34705087 34705367 -149583295 + AluSx SINE Alu 1 285 -27 25 31 0 0 chr4 34705367 34705399 -149583263 + AT_rich Low_complexity Low_complexity 1 32 0 2081 113 0 7 chr4 34705674 34705965 -149582697 - AluSc SINE Alu -20 289 1 22 0 0 0 chr4 34708246 34708268 -149580394 + AT_rich Low_complexity Low_complexity 1 22 0 4435 195 40 33 chr4 34709449 34709913 -149578749 + L1MC3 LINE L1 6745 7204 -581 2571 110 3 3 chr4 34709913 34710277 -149578385 + THE1B LTR MaLR 1 364 0 4435 195 40 33 chr4 34710277 34710846 -149577816 + L1MC3 LINE L1 7204 7785 0 1103 280 26 67 chr4 34710976 34711441 -149577221 + LTR40b LTR ERVL 3 448 -14 2371 50 0 3 chr4 34711556 34711867 -149576795 - AluY SINE Alu 0 310 1 1093 218 5 41 chr4 34712228 34712505 -149576157 + MLT1D LTR MaLR 250 505 0 384 367 88 29 chr4 34712710 34713051 -149575611 - MER45C DNA AcHobo -52 901 541 298 253 63 70 chr4 34713124 34713282 -149575380 - LTR16A1 LTR ERVL -300 157 1 848 234 0 0 chr4 34713418 34713589 -149575073 + FAM SINE Alu 1 171 -4 296 305 0 0 chr4 34714742 34714819 -149573843 + MIR SINE MIR 42 118 -90 306 356 0 0 chr4 34714915 34715030 -149573632 + MIR SINE MIR 105 219 -43 2245 200 12 2 chr4 34715073 34715493 -149573169 + MSTB LTR MaLR 3 426 0 869 237 20 0 chr4 34715526 34715724 -149572938 - MLT1D LTR MaLR -297 208 7 32 26 0 0 chr4 34716017 34716056 -149572606 + AT_rich Low_complexity Low_complexity 1 39 0 196 276 23 69 chr4 34716935 34717022 -149571640 + L2 LINE L2 3229 3311 -2 212 233 62 108 chr4 34717319 34717448 -149571214 - MIR SINE MIR -14 248 126 2532 108 8 11 chr4 34717653 34718024 -149570638 - THE1C LTR MaLR -5 370 1 26 30 0 0 chr4 34718205 34718238 -149570424 + AT_rich Low_complexity Low_complexity 1 33 0 1753 49 0 0 chr4 34718523 34718748 -149569914 + L1PA4 LINE L1 5928 6152 -3 563 223 128 7 chr4 34718772 34718920 -149569742 - FRAM SINE Alu 0 166 1 1780 240 46 26 chr4 34720330 34720834 -149567828 + MER63 DNA MER1_type 547 1060 -1 1273 301 113 36 chr4 34720999 34721630 -149567032 + L1MEc LINE L1 41 719 -5677 * 2294 204 46 18 chr4 34721625 34722194 -149566468 + L1P LINE L1 4196 4780 -1366 2285 107 31 0 chr4 34722194 34722521 -149566141 - LTR12 LTR ERV1 -1 713 377 246 309 10 0 chr4 34722521 34722618 -149566044 - LTR30 LTR ERV1 -79 643 546 879 114 7 0 chr4 34722618 34722758 -149565904 - LTR12 LTR ERV1 -432 282 142 527 294 102 22 chr4 34823288 34823563 -149465099 + L2 LINE L2 2804 3100 -172 605 284 65 22 chr4 34823674 34823906 -149464756 + MIR SINE MIR 18 259 -3 254 293 24 0 chr4 34823918 34824000 -149464662 + L2 LINE L2 3230 3313 0 * 326 188 98 45 chr4 34823981 34824093 -149464569 + MIR SINE MIR 131 248 -14 449 294 27 60 chr4 34824519 34824703 -149463959 - MIR SINE MIR -72 190 13 273 141 94 16 chr4 34824707 34824771 -149463891 + MIR SINE MIR 63 131 -77 230 329 24 0 chr4 34824775 34824857 -149463805 + MIR SINE MIR 23 106 -102 496 250 77 48 chr4 34825321 34825626 -149463036 + MLT1H LTR MaLR 115 547 -2 367 253 82 63 chr4 34826214 34826372 -149462290 + MIR SINE MIR 29 189 -73 357 238 107 57 chr4 34826378 34826500 -149462162 + L2 LINE L2 3183 3310 -3 626 300 55 24 chr4 34826535 34827006 -149461656 + MLT1K LTR MaLR 23 541 -47 1003 240 106 13 chr4 34827520 34827738 -149460924 - MER58B DNA MER1_type -2079 341 84 1840 140 3 53 chr4 34827738 34828060 -149460602 - AluJb SINE Alu -6 306 1 1003 240 106 13 chr4 34828060 34828153 -149460509 - MER58B DNA MER1_type -2336 84 1 550 299 109 54 chr4 34828279 34828626 -149460036 + L2 LINE L2 2926 3296 -17 2296 103 0 10 chr4 34828626 34828928 -149459734 + AluSx SINE Alu 1 299 -13 550 299 109 54 chr4 34828928 34828948 -149459714 + L2 LINE L2 3296 3313 0 975 224 83 22 chr4 34829096 34829324 -149459338 - MIR SINE MIR 0 262 21 269 301 39 19 chr4 34829971 34830074 -149458588 + MIR SINE MIR 126 230 -32 419 217 154 35 chr4 34830370 34830513 -149458149 + MIR SINE MIR 22 147 -61 237 196 0 0 chr4 34830954 34831005 -149457657 + (TG)n Simple_repeat Simple_repeat 2 52 0 691 281 28 43 chr4 34831212 34831465 -149457197 + MIR SINE MIR 12 260 -2 225 320 55 36 chr4 34831515 34831734 -149456928 - L1ME4a LINE L1 -65 6056 5834 368 308 0 25 chr4 34831791 34831911 -149456751 - MIR SINE MIR -58 150 34 765 146 16 16 chr4 34832455 34832615 -149456047 - FLAM_C SINE Alu 0 143 2 2007 137 0 38 chr4 34833062 34833375 -149455287 + AluSx SINE Alu 1 301 -11 648 256 50 27 chr4 34833537 34833799 -149454863 - MLT1L LTR MaLR 0 615 348 21 0 0 0 chr4 34833868 34833889 -149454773 + AT_rich Low_complexity Low_complexity 1 21 0 323 232 0 40 chr4 34833968 34834067 -149454595 - L1ME1 LINE L1 -56 6110 6016 244 247 62 12 chr4 34834084 34834165 -149454497 - MLT1L LTR MaLR -54 561 477 565 252 103 20 chr4 34834215 34834433 -149454229 + MIR SINE MIR 16 249 -13 492 265 30 8 chr4 34834658 34834790 -149453872 + MIR SINE MIR 2 136 -126 1927 118 30 0 chr4 34835101 34835372 -149453290 + AluJb SINE Alu 31 309 -3 26 30 0 0 chr4 34835569 34835602 -149453060 + AT_rich Low_complexity Low_complexity 1 33 0 292 340 19 0 chr4 34836242 34836348 -149452314 + MIR SINE MIR 34 141 -67 * 626 281 42 10 chr4 34836344 34836536 -149452126 - MIR SINE MIR 0 262 65 406 332 115 5 chr4 34836735 34836943 -149451719 + L2 LINE L2 2917 3147 -125 672 231 50 11 chr4 34836950 34837132 -149451530 + MIR SINE MIR 13 201 -61 1923 232 77 56 chr4 34837214 34837484 -149451178 - L1MC4 LINE L1 0 8042 7779 2284 104 3 10 chr4 34837484 34837783 -149450879 - AluSc SINE Alu -12 297 1 1923 232 77 56 chr4 34837783 34837928 -149450734 - L1MC4 LINE L1 -263 7779 7638 2338 101 7 0 chr4 34837928 34838224 -149450438 - AluSq SINE Alu -13 300 3 1923 232 77 56 chr4 34838224 34838483 -149450179 - L1MC4 LINE L1 -404 7638 7353 232 250 0 6 chr4 34839634 34839739 -149448923 + L2 LINE L2 2899 3059 -213 244 295 53 32 chr4 34839908 34840003 -149448659 + MIR SINE MIR 118 214 -48 1844 145 51 0 chr4 34840149 34840302 -149448360 - AluSx SINE Alu -22 290 146 225 94 0 0 chr4 34840302 34840334 -149448328 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1844 145 51 0 chr4 34840334 34840456 -149448206 - AluSx SINE Alu -166 146 1 219 258 16 32 chr4 34841606 34841668 -149446994 - L2 LINE L2 -1 3271 3211 480 229 0 9 chr4 34841726 34841835 -149446827 + LTR67 LTR ERVL 450 557 0 282 253 122 33 chr4 34842033 34842185 -149446477 - MIR SINE MIR -55 207 42 375 232 11 42 chr4 34842879 34842974 -149445688 + L2 LINE L2 3221 3312 -1 741 254 57 18 chr4 34843238 34843466 -149445196 - MIR SINE MIR -10 252 16 338 283 102 28 chr4 34843761 34844044 -149444618 - L1ME4a LINE L1 -46 6075 5772 2331 189 34 31 chr4 34844081 34844635 -149444027 - L1ME1 LINE L1 -2 6164 5609 534 266 74 58 chr4 34844836 34845148 -149443514 - L1ME4a LINE L1 -192 5929 5613 845 260 59 36 chr4 34845234 34845822 -149442840 + L1ME LINE L1 4876 5474 -688 740 125 108 0 chr4 34845837 34845957 -149442705 + FLAM_C SINE Alu 6 138 -5 230 71 0 48 chr4 34846013 34846055 -149442607 + (TTTTTA)n Simple_repeat Simple_repeat 2 41 0 2310 104 0 3 chr4 34846291 34846590 -149442072 + AluSx SINE Alu 1 298 -14 883 136 21 0 chr4 34846622 34846762 -149441900 + Tigger7 DNA MER2_type 1 143 -407 245 272 0 22 chr4 34846760 34846852 -149441810 + MER74B LTR ERVL 374 463 -159 * 293 153 0 17 chr4 34846865 34846924 -149441738 - MSTB LTR MaLR -85 341 284 235 267 23 12 chr4 34846910 34846996 -149441666 + MER74A LTR ERVL 409 495 -63 * 344 281 117 8 chr4 34847040 34847201 -149441461 + L1ME2 LINE L1 5986 6170 0 874 141 7 0 chr4 34847241 34847390 -149441272 + L1MD3 LINE L1 7832 7981 -14 287 271 21 31 chr4 34847400 34847496 -149441166 - L2 LINE L2 -484 2830 2736 1417 196 27 82 chr4 34848379 34848783 -149439879 + MLT1B LTR MaLR 1 382 -8 279 305 67 38 chr4 34848793 34848898 -149439764 + L2 LINE L2 3205 3312 -1 22 35 0 0 chr4 34848942 34848971 -149439691 + AT_rich Low_complexity Low_complexity 1 29 0 2721 113 51 5 chr4 34849057 34849466 -149439196 - MSTA LTR MaLR 0 428 1 2308 158 108 14 chr4 34849575 34850064 -149438598 + MLT1F LTR MaLR 8 542 0 2157 146 0 0 chr4 34850067 34850375 -149438287 - AluJb SINE Alu -4 308 1 1855 179 0 10 chr4 34850377 34850679 -149437983 - AluJb SINE Alu -12 300 2 1049 148 0 19 chr4 34850680 34850835 -149437827 - FRAM SINE Alu -13 163 12 272 318 178 21 chr4 34851174 34851640 -149437022 + L2 LINE L2 2213 2751 -563 3403 126 97 3 chr4 34851642 34852230 -149436432 - MER39B LTR ERV1 -4 649 7 2085 124 73 22 chr4 34852230 34852586 -149436076 + THE1C LTR MaLR 1 374 -1 10603 112 29 24 chr4 34852587 34854159 -149434503 + THE1C-int LTR MaLR 1 1580 0 1892 144 42 58 chr4 34854159 34854500 -149434162 + THE1C LTR MaLR 1 337 -38 2132 143 13 0 chr4 34854500 34854807 -149433855 - AluSx SINE Alu -1 311 1 1892 144 42 58 chr4 34854807 34854846 -149433816 + THE1C LTR MaLR 337 375 0 937 251 94 37 chr4 34854962 34855312 -149433350 + L2 LINE L2 2919 3288 -25 282 297 55 4 chr4 34855334 34855463 -149433199 + L2 LINE L2 2852 2981 -291 22 35 0 0 chr4 34855467 34855496 -149433166 + AT_rich Low_complexity Low_complexity 1 29 0 1354 163 32 109 chr4 34855505 34855818 -149432844 - AluJo SINE Alu -23 289 1 210 265 10 61 chr4 34855842 34855940 -149432722 + L2 LINE L2 3004 3096 -176 315 0 0 0 chr4 34856096 34856131 -149432531 + (TGAA)n Simple_repeat Simple_repeat 4 38 0 263 200 13 53 chr4 34856165 34856240 -149432422 + MIR3 SINE MIR 86 157 -51 1494 185 11 24 chr4 34857167 34857454 -149431208 - L1MC3 LINE L1 -462 7323 7041 517 148 148 0 chr4 34857454 34857542 -149431120 + Tigger3(Golem) DNA MER2_type 1 101 -2928 * 3964 106 99 45 chr4 34857533 34857632 -149431030 + Tigger3(Golem) DNA MER2_type 2229 2321 -707 2390 94 0 0 chr4 34857632 34857929 -149430733 - AluSq SINE Alu -16 297 1 3964 106 99 45 chr4 34857929 34857945 -149430717 + Tigger3(Golem) DNA MER2_type 2321 2335 -693 1553 174 22 59 chr4 34857945 34858267 -149430395 - AluJo SINE Alu -2 310 1 3964 106 99 45 chr4 34858267 34858504 -149430158 + Tigger3(Golem) DNA MER2_type 2335 2558 -470 2364 111 0 0 chr4 34858504 34858810 -149429852 + AluSq SINE Alu 1 306 -7 3964 106 99 45 chr4 34858810 34859209 -149429453 + Tigger3(Golem) DNA MER2_type 2558 3023 -5 2042 170 47 72 chr4 34859286 34859478 -149429184 - L1MC3 LINE L1 -830 6955 6760 348 24 0 0 chr4 34859478 34859519 -149429143 + (TC)n Simple_repeat Simple_repeat 2 42 0 1838 168 4 0 chr4 34859520 34859800 -149428862 - AluJb SINE Alu -31 281 1 2042 170 47 72 chr4 34859800 34860118 -149428544 - L1MC3 LINE L1 -1024 6761 6456 1079 212 60 11 chr4 34860119 34860388 -149428274 - L1MC4 LINE L1 -1029 7013 6732 1994 230 160 39 chr4 34860397 34861436 -149427226 - L1MC3 LINE L1 -1229 6556 5418 186 184 0 0 chr4 34862076 34862113 -149426549 + (TCCA)n Simple_repeat Simple_repeat 1 40 -9 2613 183 78 22 chr4 34862113 34862648 -149426014 - MLT1F1 LTR MaLR -2 565 1 186 184 0 0 chr4 34862648 34862659 -149426003 + (TCCA)n Simple_repeat Simple_repeat 39 49 0 496 201 43 5 chr4 34862751 34862921 -149425741 - MER102b DNA MER1_type -1 340 76 484 316 69 43 chr4 34863089 34863320 -149425342 + L2 LINE L2 2936 3172 -100 623 282 158 28 chr4 34863998 34864227 -149424435 + L2 LINE L2 2702 2900 -372 2336 103 0 0 chr4 34864227 34864527 -149424135 - AluSc SINE Alu -9 300 1 623 282 158 28 chr4 34864527 34864791 -149423871 + L2 LINE L2 2900 3254 -18 304 260 30 20 chr4 34864886 34864986 -149423676 - MIR SINE MIR -65 143 43 535 246 8 8 chr4 34865520 34865642 -149423020 + MLT1K LTR MaLR 140 261 -327 272 133 100 0 chr4 34865780 34865840 -149422822 + MLT1K LTR MaLR 513 578 -10 2394 94 0 3 chr4 34865841 34866138 -149422524 + AluSq SINE Alu 1 296 -17 914 293 75 19 chr4 34866324 34866737 -149421925 - LTR16B LTR ERVL -13 451 16 593 276 32 5 chr4 34866866 34867051 -149421611 + MER117 DNA MER1_type 5 194 -3 540 294 106 0 chr4 34867218 34867388 -149421274 - MIR SINE MIR -12 250 63 6842 178 26 7 chr4 34867676 34870058 -149418604 - L1MA2 LINE L1 0 6304 3856 185 0 40 0 chr4 34870058 34870083 -149418579 + (ATGTG)n Simple_repeat Simple_repeat 2 27 0 6842 178 26 7 chr4 34870083 34870351 -149418311 - L1MA2 LINE L1 -2448 3856 3595 408 250 152 0 chr4 34870384 34870516 -149418146 - MIR SINE MIR -29 233 82 186 43 0 0 chr4 34870539 34870562 -149418100 + (TG)n Simple_repeat Simple_repeat 1 23 0 2085 130 3 3 chr4 34870713 34871006 -149417656 - AluSx SINE Alu -17 295 3 1164 145 0 0 chr4 34871169 34871335 -149417327 - FRAM SINE Alu 0 166 1 672 299 24 14 chr4 34871404 34871611 -149417051 + MIR SINE MIR 3 211 -51 235 230 130 10 chr4 34871728 34871828 -149416834 + LTR67 LTR ERVL 441 552 -5 378 236 117 99 chr4 34872203 34872546 -149416116 + L2 LINE L2 2875 3223 -90 1090 127 40 115 chr4 34872653 34872906 -149415756 - MLT1A1 LTR MaLR 0 365 132 2152 111 0 14 chr4 34872906 34873195 -149415467 + AluSx SINE Alu 1 285 -27 337 217 20 51 chr4 34873195 34873297 -149415365 + L1MC4 LINE L1 1995 6984 -1338 375 279 47 0 chr4 34873300 34873386 -149415276 + L1MC4 LINE L1 6614 6703 -1339 834 136 0 21 chr4 34873399 34873539 -149415123 - MLT1A1 LTR MaLR -227 138 2 266 283 119 38 chr4 34873723 34873758 -149414904 - MIR SINE MIR -75 187 156 351 0 0 0 chr4 34873758 34873797 -149414865 + (CAT)n Simple_repeat Simple_repeat 2 40 0 266 283 119 38 chr4 34873797 34873920 -149414742 - MIR SINE MIR -106 156 16 306 0 0 0 chr4 34874986 34875020 -149413642 + (TG)n Simple_repeat Simple_repeat 1 34 0 468 174 0 0 chr4 34875308 34875400 -149413262 + (CA)n Simple_repeat Simple_repeat 1 92 0 421 291 122 9 chr4 34875620 34875833 -149412829 - MIR SINE MIR -4 258 22 544 306 73 5 chr4 34876065 34876271 -149412391 + L2 LINE L2 2844 3063 -209 1257 230 67 30 chr4 34876512 34876639 -149412023 + MER113 DNA MER1_type? 73 194 -327 2392 80 0 3 chr4 34876639 34876939 -149411723 + AluSq SINE Alu 1 299 -14 1257 230 67 30 chr4 34876939 34877216 -149411446 + MER113 DNA MER1_type? 194 492 -29 2082 142 3 0 chr4 34877238 34877540 -149411122 - AluSx SINE Alu -9 303 1 1954 148 3 17 chr4 34878022 34878319 -149410343 - AluJo SINE Alu -19 293 1 21 0 0 0 chr4 34878369 34878390 -149410272 + AT_rich Low_complexity Low_complexity 1 21 0 217 294 151 8 chr4 34878559 34878663 -149409999 - L2 LINE L2 -547 2767 2647 420 278 224 4 chr4 34878663 34878860 -149409802 + MIR SINE MIR 2 232 -30 277 266 97 0 chr4 34878962 34879075 -149409587 - MIR3 SINE MIR -71 137 14 197 339 0 0 chr4 34879173 34879232 -149409430 + L3b LINE CR1 1351 1409 -174 271 217 17 17 chr4 34879289 34879349 -149409313 + Charlie8 DNA MER1_type 3 62 -2355 2154 122 3 0 chr4 34879650 34879945 -149408717 - AluSx SINE Alu -16 296 1 1780 168 20 3 chr4 34880042 34880334 -149408328 - AluJo SINE Alu -15 297 1 312 274 12 12 chr4 34880348 34880432 -149408230 - MIR3 SINE MIR -8 200 117 2229 99 0 3 chr4 34880655 34880960 -149407702 + AluSq SINE Alu 1 304 0 358 291 94 72 chr4 34881054 34881277 -149407385 - L1ME4a LINE L1 0 6121 5894 432 246 71 8 chr4 34881298 34881472 -149407190 + L1ME3 LINE L1 5985 6163 -1 294 291 121 36 chr4 34882306 34882471 -149406191 + MIR SINE MIR 48 226 -36 199 255 0 113 chr4 34882642 34882748 -149405914 - MIR SINE MIR -55 207 114 455 234 52 19 chr4 34882817 34882971 -149405691 + L1ME3 LINE L1 6002 6160 -2 2272 121 0 0 chr4 34882974 34883272 -149405390 + AluSx SINE Alu 1 298 -14 415 268 138 31 chr4 34883486 34883710 -149404952 - MER113 DNA MER1_type? -71 450 203 37 52 0 0 chr4 34883752 34883810 -149404852 + AT_rich Low_complexity Low_complexity 1 58 0 2372 125 19 8 chr4 34883926 34884303 -149404359 + LTR9B LTR ERV1 178 558 -86 462 18 0 0 chr4 34884303 34884358 -149404304 + (CA)n Simple_repeat Simple_repeat 1 55 0 216 0 0 0 chr4 34884359 34884383 -149404279 + (TAA)n Simple_repeat Simple_repeat 3 26 0 859 216 61 35 chr4 34884412 34884643 -149404019 - MIR SINE MIR -13 249 13 364 240 20 27 chr4 34884643 34884789 -149403873 - MER113 DNA MER1_type? -364 157 13 243 269 42 76 chr4 34884816 34884935 -149403727 - MIR3 SINE MIR -50 158 44 183 80 0 0 chr4 34885260 34885285 -149403377 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 1926 149 0 3 chr4 34885688 34885970 -149402692 + AluJb SINE Alu 1 281 -31 207 0 0 0 chr4 34885974 34885997 -149402665 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 981 167 17 6 chr4 34886000 34886217 -149402445 + AluSg/x SINE Alu 137 312 0 185 274 59 0 chr4 34886254 34886305 -149402357 - L2 LINE L2 -13 3300 3247 1463 231 31 100 chr4 34886335 34886626 -149402036 - MLT1D LTR MaLR 0 505 196 1982 141 27 3 chr4 34886626 34886925 -149401737 - AluSx SINE Alu -6 306 1 1463 231 31 100 chr4 34886925 34886948 -149401714 - MLT1D LTR MaLR -309 196 173 847 137 0 0 chr4 34886948 34887065 -149401597 - FLAM_C SINE Alu -16 117 1 1463 231 31 100 chr4 34887065 34887291 -149401371 - MLT1D LTR MaLR -332 173 1 423 255 124 66 chr4 34887314 34887573 -149401089 - L2 LINE L2 -163 3109 2836 398 176 224 8 chr4 34888187 34888312 -149400350 - MLT1K LTR MaLR 0 549 398 936 187 43 10 chr4 34888443 34888689 -149399973 - L2 LINE L2 -277 3036 2784 672 255 86 59 chr4 34889533 34889823 -149398839 - MLT1K LTR MaLR -165 423 126 2277 92 0 58 chr4 34889846 34890171 -149398491 + AluSg SINE Alu 1 306 -4 246 268 24 12 chr4 34890478 34890560 -149398102 + MIR SINE MIR 180 262 0 500 333 82 22 chr4 34890828 34891059 -149397603 + MIR SINE MIR 14 258 -4 515 267 41 45 chr4 34891164 34891358 -149397304 + MIR SINE MIR 1 192 -64 188 67 33 0 chr4 34892052 34892082 -149396580 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1381 138 19 31 chr4 34892174 34892435 -149396227 + Tigger5 DNA MER2_type 2066 2323 0 415 262 19 9 chr4 34892435 34892542 -149396120 - MIR SINE MIR -64 198 91 270 227 57 34 chr4 34892766 34892854 -149395808 + MER96 DNA MER1_type? 69 158 -17 513 257 57 14 chr4 34894485 34894625 -149394037 + MIR SINE MIR 43 188 -74 298 195 24 73 chr4 34894638 34894720 -149393942 + AluJ/FLAM SINE Alu 2 79 -223 473 104 13 0 chr4 34894723 34894800 -149393862 + (GGAA)n Simple_repeat Simple_repeat 3 80 0 1083 162 12 0 chr4 34894803 34894970 -149393692 + AluJo SINE Alu 127 295 -17 255 233 17 0 chr4 34894999 34895059 -149393603 + MIR SINE MIR 202 262 0 275 222 0 0 chr4 34895464 34895518 -149393144 + MIR3 SINE MIR 109 162 -46 195 250 0 0 chr4 34895532 34895584 -149393078 + (TCCA)n Simple_repeat Simple_repeat 3 54 0 725 215 106 115 chr4 34895607 34896058 -149392604 - LTR16A1 LTR ERVL -10 447 1 788 250 60 103 chr4 34896090 34896458 -149392204 - L2 LINE L2 -3 3269 2918 453 235 122 4 chr4 34896710 34896836 -149391826 + MIR3 SINE MIR 34 166 -48 302 246 0 0 chr4 34896827 34896892 -149391770 + L2 LINE L2 634 698 -2616 * 196 321 18 0 chr4 34896898 34896954 -149391708 + L2 LINE L2 3215 3271 -1 3105 267 112 19 chr4 34897087 34898191 -149390471 + L2 LINE L2 1453 2659 -655 2087 159 67 41 chr4 34898389 34898853 -149389809 - MLT1D LTR MaLR -7 498 23 281 282 0 0 chr4 34899514 34899592 -149389070 + MER5A DNA MER1_type 4 81 -108 394 353 125 10 chr4 34899663 34899966 -149388696 - L2 LINE L2 -1 3271 2934 2147 133 79 16 chr4 34900008 34900375 -149388287 - MLT1B LTR MaLR 0 390 1 409 237 160 5 chr4 34900823 34901017 -149387645 - L1MC4 LINE L1 0 8042 7819 1659 158 14 14 chr4 34901056 34901334 -149387328 - AluJo SINE Alu -22 290 13 465 225 9 9 chr4 34901470 34901581 -149387081 - FLAM_C SINE Alu -31 112 2 2566 53 0 7 chr4 34901771 34902073 -149386589 - AluY SINE Alu -11 300 1 29 0 0 0 chr4 34902075 34902104 -149386558 + AT_rich Low_complexity Low_complexity 1 29 0 678 264 56 30 chr4 34902621 34902852 -149385810 - MIR SINE MIR -12 250 9 414 326 0 35 chr4 34902884 34903025 -149385637 - L2 LINE L2 -213 3059 2924 366 297 38 72 chr4 34903364 34903507 -149385155 - L2 LINE L2 -78 3235 3089 2410 102 3 0 chr4 34903507 34903811 -149384851 - AluSp SINE Alu -8 305 1 938 147 43 38 chr4 34903811 34903995 -149384667 - MER5A DNA MER1_type -4 185 1 366 297 38 72 chr4 34903995 34904086 -149384576 - L2 LINE L2 -222 3091 3008 389 158 12 0 chr4 34904117 34904199 -149384463 + (TGAG)n Simple_repeat Simple_repeat 4 86 0 245 358 68 20 chr4 34904791 34904939 -149383723 - L2 LINE L2 -12 3260 3106 215 213 193 33 chr4 34904946 34905063 -149383599 + MIR SINE MIR 18 157 -105 * 494 225 183 0 chr4 34905053 34905222 -149383440 - MIR SINE MIR 0 262 63 187 215 28 178 chr4 34905344 34905451 -149383211 + MER5A DNA MER1_type 59 149 -40 564 249 21 53 chr4 34905620 34905809 -149382853 - MLT1L LTR MaLR -308 307 125 211 267 57 57 chr4 34905969 34906074 -149382588 - L2 LINE L2 -182 3090 2986 204 102 61 0 chr4 34956434 34956483 -149332179 + (TA)n Simple_repeat Simple_repeat 1 52 0 23 33 0 0 chr4 34957235 34957265 -149331397 + AT_rich Low_complexity Low_complexity 1 30 0 721 160 35 80 chr4 34957591 34957791 -149330871 + LTR49-int LTR ERV1 3098 3288 -3043 380 70 0 18 chr4 34957819 34957876 -149330786 + AluS SINE Alu 22 77 -226 437 231 19 0 chr4 34957931 34958035 -149330627 + LTR49-int LTR ERV1 3348 3453 -2878 30 109 0 0 chr4 34958157 34958285 -149330377 + AT_rich Low_complexity Low_complexity 1 128 0 1346 183 39 69 chr4 34958297 34959053 -149329609 + LTR49-int LTR ERV1 1925 4498 -2280 701 149 8 15 chr4 34959074 34959208 -149329454 + LTR49-int LTR ERV1 4039 4171 -2160 381 78 0 0 chr4 34959308 34959359 -149329303 - MER4E LTR ERV1 -715 51 1 3075 183 108 32 chr4 34959411 34960192 -149328470 - L1MA9 LINE L1 -40 6272 5433 497 157 10 59 chr4 34960193 34960295 -149328367 - FLAM_C SINE Alu -10 133 37 183 80 0 0 chr4 34960312 34960337 -149328325 + (TTG)n Simple_repeat Simple_repeat 2 26 0 760 157 0 0 chr4 34960337 34960458 -149328204 - FLAM_C SINE Alu -22 121 1 779 107 30 77 chr4 34960462 34960630 -149328032 - L1MA9 LINE L1 -733 5435 5276 2231 106 6 0 chr4 34960634 34960945 -149327717 - AluSp SINE Alu 0 313 1 1215 219 15 19 chr4 34961120 34961380 -149327282 + MLT1A1 LTR MaLR 7 265 -100 693 268 53 11 chr4 34961412 34961696 -149326966 + L1MB7 LINE L1 5280 5575 -587 2464 58 0 7 chr4 34962017 34962325 -149326337 - AluY SINE Alu -5 306 1 1159 331 116 6 chr4 34962378 34963015 -149325647 + L2 LINE L2 2265 2971 -343 504 315 8 0 chr4 34963312 34963442 -149325220 + L2 LINE L2 3141 3271 -1 2052 111 30 3 chr4 34963490 34963788 -149324874 + AluSx SINE Alu 1 306 -6 805 122 0 0 chr4 34965156 34965279 -149323383 - AluSp/q SINE Alu -3 310 188 261 351 78 20 chr4 34965281 34965526 -149323136 + L3 LINE CR1 636 894 -683 1200 223 0 16 chr4 34965532 34965779 -149322883 + AluJo SINE Alu 42 284 -28 194 146 0 24 chr4 34965810 34965851 -149322811 + (GAAA)n Simple_repeat Simple_repeat 1 40 0 335 306 42 87 chr4 34966336 34966601 -149322061 + L3 LINE CR1 1213 1465 -112 1775 208 21 8 chr4 34966724 34967109 -149321553 - MLT1B LTR MaLR 0 390 1 384 231 0 0 chr4 34967449 34967553 -149321109 + (TA)n Simple_repeat Simple_repeat 2 105 0 867 249 18 9 chr4 34967570 34967787 -149320875 + MER20 DNA MER1_type 1 219 0 1408 122 43 141 chr4 34969549 34969876 -149318786 + AluSg SINE Alu 2 296 -4 2337 203 21 6 chr4 34970208 34970690 -149317972 + L1PB4 LINE L1 5668 6156 0 28 91 0 0 chr4 34970690 34970767 -149317895 + AT_rich Low_complexity Low_complexity 1 77 0 5541 89 12 1 chr4 34970844 34971379 -149317283 - L1P LINE L1 -1413 4733 4186 2315 88 3 0 chr4 34971379 34971674 -149316988 - AluSp SINE Alu -17 296 1 5541 89 12 1 chr4 34971674 34971910 -149316752 - L1P LINE L1 -1960 4186 3954 6450 78 10 2 chr4 34971910 34973333 -149315329 + L1PA7 LINE L1 4718 6149 -5 2357 189 101 31 chr4 34973448 34974030 -149314632 + L1MB7 LINE L1 5562 6184 0 377 294 37 0 chr4 34974084 34974220 -149314442 + MIR SINE MIR 122 262 0 365 394 0 21 chr4 34974773 34974915 -149313747 - L2 LINE L2 0 3272 3134 251 343 7 89 chr4 34974949 34975095 -149313567 - L2 LINE L2 -268 3004 2871 348 311 38 55 chr4 34975271 34975454 -149313208 - L2 LINE L2 0 3313 3134 427 338 110 11 chr4 34975749 34976030 -149312632 - L2 LINE L2 -556 2758 2450 2914 194 54 7 chr4 34976473 34977153 -149311509 - L1MB4 LINE L1 0 6180 5469 * 5476 139 21 9 chr4 34977134 34978145 -149310517 - L1PA5 LINE L1 0 6154 5134 22 56 0 0 chr4 34978742 34978778 -149309884 + AT_rich Low_complexity Low_complexity 1 36 0 201 74 0 0 chr4 34979676 34979703 -149308959 + (CA)n Simple_repeat Simple_repeat 2 28 0 796 206 86 128 chr4 34979963 34980323 -149308339 + MLT2D LTR ERVL 1 345 -69 439 266 75 35 chr4 34980507 34980706 -149307956 + LTR7 LTR ERV1 226 432 -18 918 169 46 46 chr4 34980708 34980927 -149307735 - pTR5 LTR ERV1 -1479 959 741 633 292 82 21 chr4 34981226 34981469 -149307193 + MLT1C LTR MaLR 210 467 0 426 333 56 30 chr4 34983206 34983404 -149305258 + MIR SINE MIR 8 210 -52 260 231 46 0 chr4 34983432 34983497 -149305165 - LTR16A LTR ERVL 0 450 383 390 259 91 25 chr4 34983892 34984089 -149304573 + L1MB2 LINE L1 5594 5803 -318 371 125 0 0 chr4 34984396 34984452 -149304210 + MSTA LTR MaLR 373 428 0 268 345 97 0 chr4 34984876 34985021 -149303641 - L3 LINE CR1 -715 862 704 422 314 144 15 chr4 34985195 34985466 -149303196 + L2 LINE L2 3005 3310 -3 333 356 17 0 chr4 34985590 34985705 -149302957 - L2 LINE L2 -6 3307 3191 698 257 50 0 chr4 34986307 34986509 -149302153 + MER82 DNA MER2_type 6 217 -436 183 102 41 20 chr4 34986513 34986562 -149302100 + (TA)n Simple_repeat Simple_repeat 2 51 0 1199 254 71 32 chr4 34986853 34987119 -149301543 + MER82 DNA MER2_type 201 489 -164 1863 166 0 0 chr4 34987119 34987426 -149301236 + AluSq SINE Alu 1 307 0 1199 254 71 32 chr4 34987426 34987536 -149301126 + MER82 DNA MER2_type 489 593 -60 325 82 41 0 chr4 34987536 34987585 -149301077 - MLT2A2 LTR ERVL 0 453 403 5552 118 14 3 chr4 34987923 34989030 -149299632 - L1PA15 LINE L1 -3 6162 5034 1244 226 8 0 chr4 34989030 34989291 -149299371 - L1P LINE L1 -2429 3717 3455 190 276 26 26 chr4 34990019 34990095 -149298567 + L3 LINE CR1 835 910 -667 29 47 0 0 chr4 34991076 34991119 -149297543 + AT_rich Low_complexity Low_complexity 1 43 0 646 189 167 0 chr4 34991760 34991940 -149296722 + L1MB2 LINE L1 5953 6162 -9 1300 258 27 46 chr4 34992348 34993188 -149295474 + L1PA15-16 LINE L1 697 1527 -4676 2294 106 0 3 chr4 34993188 34993500 -149295162 + AluY SINE Alu 1 311 0 1300 258 27 46 chr4 34993500 34993550 -149295112 + L1PA15-16 LINE L1 1527 1576 -4627 2150 60 19 48 chr4 34994127 34994442 -149294220 + AluY SINE Alu 1 306 -5 213 313 153 14 chr4 34995416 34995560 -149293102 - MIR SINE MIR 0 262 99 1041 141 78 0 chr4 34995705 34995897 -149292765 - L1MA4A LINE L1 -11 6292 6086 1609 210 58 20 chr4 34996214 34996662 -149292000 - MER31B LTR ERV1 0 466 2 21 0 0 0 chr4 34998396 34998417 -149290245 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr4 34999152 34999181 -149289481 + AT_rich Low_complexity Low_complexity 1 29 0 600 123 0 0 chr4 34999380 34999494 -149289168 + (CA)n Simple_repeat Simple_repeat 2 115 0 1908 132 0 30 chr4 34999610 34999906 -149288756 - AluSx SINE Alu -25 287 1 194 62 31 0 chr4 34999936 34999968 -149288694 + (TA)n Simple_repeat Simple_repeat 2 34 0 645 221 7 52 chr4 35000746 35000900 -149287762 + MER87 LTR ERV1 1 147 -394 3563 76 6 4 chr4 35000900 35001385 -149287277 - L1PA8 LINE L1 -3 6169 5684 2207 66 3 3 chr4 35001485 35001772 -149286890 - L1PA8 LINE L1 -470 5684 5398 1722 212 57 16 chr4 35001772 35002159 -149286503 + MER87 LTR ERV1 139 541 0 2091 120 52 63 chr4 35002383 35002825 -149285837 - LTR23 LTR ERV1 0 437 1 3928 206 31 37 chr4 35002898 35003715 -149284947 + MER21B LTR ERV1 3 814 -49 311 64 0 21 chr4 35004595 35004642 -149284020 + (TA)n Simple_repeat Simple_repeat 2 47 0 22 0 0 0 chr4 35004702 35004724 -149283938 + AT_rich Low_complexity Low_complexity 1 22 0 38 81 0 0 chr4 35005245 35005332 -149283330 + AT_rich Low_complexity Low_complexity 1 87 0 2124 150 22 8 chr4 35005771 35006130 -149282532 - THE1B LTR MaLR 0 364 1 264 394 69 12 chr4 35006194 35006354 -149282308 + L2 LINE L2 3104 3272 0 208 183 17 17 chr4 35007323 35007383 -149281279 + (TA)n Simple_repeat Simple_repeat 2 61 0 2108 51 0 104 chr4 35007455 35007798 -149280864 + AluY SINE Alu 1 310 0 225 250 50 20 chr4 35008784 35008884 -149279778 + L1ME3 LINE L1 5838 5940 -226 242 246 98 25 chr4 35009028 35009158 -149279504 + L1ME3 LINE L1 5928 6074 -96 6578 234 23 27 chr4 35009548 35012020 -149276642 - L1PA13 LINE L1 -2929 3868 1401 3320 285 26 19 chr4 35012010 35012895 -149275767 - L1PA13 LINE L1 -5896 891 1 * 197 323 108 46 chr4 35015006 35015121 -149273541 - L2 LINE L2 -2 3311 3178 2093 88 4 0 chr4 35015121 35015394 -149273268 + AluSx SINE Alu 25 298 -14 197 323 108 46 chr4 35015394 35015473 -149273189 - L2 LINE L2 -135 3178 3105 1408 258 67 0 chr4 35016114 35016474 -149272188 + MLT1F1 LTR MaLR 184 567 0 1144 291 17 17 chr4 35016474 35016893 -149271769 + L1ME3 LINE L1 5737 6155 -7 32 57 0 0 chr4 35016930 35016983 -149271679 + AT_rich Low_complexity Low_complexity 1 53 0 585 299 61 102 chr4 35018879 35019093 -149269569 - L2 LINE L2 -745 2569 2348 2200 130 120 5 chr4 35019093 35019477 -149269185 + MSTA LTR MaLR 1 428 0 585 299 61 102 chr4 35019477 35019816 -149268846 - L2 LINE L2 -966 2348 2053 3951 34 0 0 chr4 35019816 35020286 -149268376 + L1PA3 LINE L1 5683 6152 -3 585 299 61 102 chr4 35020286 35020498 -149268164 - L2 LINE L2 -1261 2053 1834 591 339 31 8 chr4 35020529 35020786 -149267876 + LTR16B LTR ERVL 72 334 -130 2144 119 122 13 chr4 35023672 35024003 -149264659 + MSTA LTR MaLR 1 381 -47 3842 117 41 15 chr4 35024003 35024385 -149264277 - L1PA11 LINE L1 0 6174 5769 2004 88 51 14 chr4 35024385 35024679 -149263983 - AluY SINE Alu -6 305 1 3842 117 41 15 chr4 35024679 35024903 -149263759 - L1PA11 LINE L1 -405 5769 5552 2144 119 122 13 chr4 35024903 35024957 -149263705 + MSTA LTR MaLR 381 428 0 22 0 0 0 chr4 35025670 35025692 -149262970 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 35026547 35026568 -149262094 + AT_rich Low_complexity Low_complexity 1 21 0 801 240 93 0 chr4 35027582 35027786 -149260876 - MER58A DNA MER1_type 0 224 2 403 220 22 0 chr4 35028117 35028208 -149260454 + MER82 DNA MER2_type 2 94 -559 276 30 0 0 chr4 35028219 35028252 -149260410 + (CA)n Simple_repeat Simple_repeat 2 34 0 355 369 20 0 chr4 35028292 35028441 -149260221 - MIR SINE MIR -109 153 2 459 288 186 11 chr4 35028471 35028648 -149260014 + MER82 DNA MER2_type 444 651 -2 318 280 84 44 chr4 35028678 35028974 -149259688 - L1ME3 LINE L1 -211 5951 5644 605 133 0 0 chr4 35029246 35029344 -149259318 - L1PA10 LINE L1 -2 6166 6069 941 237 81 38 chr4 35030112 35030509 -149258153 + MER96B DNA MER1_type 4 417 0 317 344 47 0 chr4 35030511 35030639 -149258023 - L1MEd LINE L1 -5385 734 601 809 193 20 0 chr4 35031154 35031304 -149257358 - MLT1A1 LTR MaLR -56 309 157 359 252 130 9 chr4 35031695 35031810 -149256852 + MIR SINE MIR 59 187 -75 391 326 98 68 chr4 35031868 35032402 -149256260 - L2 LINE L2 -12 3301 2757 449 204 0 164 chr4 35032411 35032631 -149256031 - MLT2B1 LTR ERVL -1 519 336 * 1117 254 9 97 chr4 35032607 35033071 -149255591 - MLT2B1 LTR ERVL -97 423 1 984 268 84 39 chr4 35033078 35033493 -149255169 - L2 LINE L2 -571 2743 2310 245 29 0 29 chr4 35035124 35035159 -149253503 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 329 285 16 16 chr4 35036328 35036451 -149252211 + CT-rich Low_complexity Low_complexity 2 124 0 6857 114 0 9 chr4 35036502 35037584 -149251078 - L1P LINE L1 -2346 3800 2729 2245 117 11 0 chr4 35037584 35037933 -149250729 + L1PA8 LINE L1 5818 6171 -1 187 272 40 72 chr4 35038299 35038313 -149250349 - MIR SINE MIR -2 260 247 1998 136 0 11 chr4 35038313 35038627 -149250035 + AluSx SINE Alu 1 311 0 187 272 40 72 chr4 35038627 35038736 -149249926 - MIR SINE MIR -15 247 140 231 363 49 0 chr4 35038772 35038874 -149249788 + MIR SINE MIR 156 262 0 247 156 0 0 chr4 35038934 35038979 -149249683 + L1PA15 LINE L1 5987 6031 -134 1860 182 16 16 chr4 35039558 35039926 -149248736 - L1PA15 LINE L1 -13 6152 5785 2703 243 56 40 chr4 35040648 35040965 -149247697 - L1MB5 LINE L1 0 6410 6100 2464 61 0 3 chr4 35040965 35041275 -149247387 + AluY SINE Alu 1 309 -2 2703 243 56 40 chr4 35041275 35042154 -149246508 - L1MB5 LINE L1 -310 6100 5183 1560 240 14 6 chr4 35042154 35042516 -149246146 + MLT1A1 LTR MaLR 1 365 0 2703 243 56 40 chr4 35042516 35042942 -149245720 - L1MB5 LINE L1 -1227 5183 4765 1299 255 88 20 chr4 35042961 35043369 -149245293 - MLT2B3 LTR ERVL -118 436 1 1541 256 92 17 chr4 35043369 35044011 -149244651 - L1MB5 LINE L1 -1592 4790 4101 2007 143 57 20 chr4 35044016 35044367 -149244295 - THE1B LTR MaLR 0 364 1 11102 109 14 0 chr4 35044370 35045925 -149242737 - THE1B-int LTR MaLR -3 1577 1 1911 140 39 16 chr4 35045925 35046232 -149242430 - THE1B LTR MaLR 0 364 51 847 225 5 132 chr4 35046254 35046640 -149242022 - L1MB5 LINE L1 -2311 4071 3735 2927 251 49 36 chr4 35046691 35048857 -149239805 - L1MB5 LINE L1 -3515 2867 566 567 295 112 18 chr4 35048951 35049290 -149239372 - L1MB5 LINE L1 -5983 401 31 22 35 0 0 chr4 35049926 35049955 -149238707 + AT_rich Low_complexity Low_complexity 1 29 0 273 75 0 0 chr4 35050123 35050163 -149238499 + (CA)n Simple_repeat Simple_repeat 2 41 0 794 231 24 50 chr4 35050212 35050548 -149238114 - MER96B DNA MER1_type? 0 417 14 213 108 0 0 chr4 35051004 35051041 -149237621 + (CA)n Simple_repeat Simple_repeat 1 37 0 273 128 0 0 chr4 35051163 35051210 -149237452 + (TCCA)n Simple_repeat Simple_repeat 4 50 0 313 264 107 8 chr4 35051263 35051384 -149237278 + L1MC4a LINE L1 6171 6303 -1505 * 1548 205 49 3 chr4 35051379 35051745 -149236917 - L1 LINE L1 -2076 4772 4390 646 236 11 6 chr4 35051739 35051913 -149236749 - L1 LINE L1 -3068 3780 3606 * 1771 175 0 0 chr4 35051915 35052206 -149236456 - AluJb SINE Alu -21 291 1 411 212 0 5 chr4 35052229 35052334 -149236328 - L1 LINE L1 -3218 3630 3529 323 204 68 0 chr4 35052348 35052480 -149236182 + (TTCA)n Simple_repeat Simple_repeat 3 143 0 7838 231 93 54 chr4 35052495 35055794 -149232868 - L1 LINE L1 -3235 3613 184 22 35 0 0 chr4 35056011 35056040 -149232622 + AT_rich Low_complexity Low_complexity 1 29 0 316 351 117 15 chr4 35056405 35056610 -149232052 - MIR SINE MIR -13 249 24 14409 154 47 10 chr4 35056806 35059427 -149229235 - Tigger2 DNA MER2_type 0 2718 1 262 302 55 0 chr4 35059428 35059519 -149229143 - MIR SINE MIR -66 142 58 24 32 0 0 chr4 35059852 35059883 -149228779 + AT_rich Low_complexity Low_complexity 1 31 0 298 397 0 9 chr4 35061700 35061816 -149226846 + MIR SINE MIR 20 134 -74 221 116 0 23 chr4 35062171 35062214 -149226448 + (GAAA)n Simple_repeat Simple_repeat 3 44 0 225 0 0 0 chr4 35062781 35062806 -149225856 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 2004 134 0 7 chr4 35062808 35063091 -149225571 - AluSx SINE Alu -30 282 2 194 248 69 69 chr4 35063774 35063875 -149224787 - MIR3 SINE MIR -14 194 94 1696 173 73 22 chr4 35065536 35065905 -149222757 - MLT1B LTR MaLR 0 390 3 22 94 0 0 chr4 35065926 35065990 -149222672 + AT_rich Low_complexity Low_complexity 1 64 0 33 25 0 0 chr4 35066361 35066401 -149222261 + AT_rich Low_complexity Low_complexity 1 40 0 330 363 28 28 chr4 35069225 35069404 -149219258 + HAL1b LINE L1 90 268 -1080 466 306 54 7 chr4 35069585 35069732 -149218930 + MIR SINE MIR 14 167 -95 23 68 0 0 chr4 35070232 35070276 -149218386 + AT_rich Low_complexity Low_complexity 1 44 0 888 174 7 0 chr4 35070754 35070903 -149217759 + AluJb SINE Alu 154 303 -9 1976 160 39 24 chr4 35071030 35071298 -149217364 + MLT1B LTR MaLR 1 278 -112 2139 117 0 0 chr4 35071298 35071607 -149217055 + AluSc SINE Alu 1 309 0 1976 160 39 24 chr4 35071607 35071719 -149216943 + MLT1B LTR MaLR 278 387 -3 4140 124 56 27 chr4 35071722 35072489 -149216173 - Tigger3(Golem) DNA MER2_type -1 3028 2240 562 219 9 0 chr4 35072492 35072597 -149216065 - Tigger3(Golem) DNA MER2_type -2922 107 2 688 307 118 52 chr4 35073252 35074457 -149214205 + L1MEc LINE L1 206 1490 -5073 528 329 93 7 chr4 35074479 35074929 -149213733 + L1MEc LINE L1 1576 2064 -4499 306 331 51 17 chr4 35075333 35075511 -149213151 + MLT1L LTR MaLR 38 221 -394 21 71 0 0 chr4 35077314 35077356 -149211306 + AT_rich Low_complexity Low_complexity 1 42 0 1578 222 39 66 chr4 35077506 35077993 -149210669 + MER31A LTR ERV1 4 477 -8 26 50 0 0 chr4 35078230 35078270 -149210392 + AT_rich Low_complexity Low_complexity 1 40 0 2227 97 10 3 chr4 35078440 35078857 -149209805 + AluSp SINE Alu 1 419 0 813 192 66 0 chr4 35079589 35079740 -149208922 - MLT1B LTR MaLR -229 161 1 189 0 0 0 chr4 35079988 35080009 -149208653 + (GAA)n Simple_repeat Simple_repeat 1 21 0 32 26 0 0 chr4 35080467 35080506 -149208156 + AT_rich Low_complexity Low_complexity 1 39 0 2584 157 43 14 chr4 35080506 35081021 -149207641 - L1MA9 LINE L1 0 6312 5783 292 123 15 15 chr4 35081021 35081086 -149207576 + (TCTA)n Simple_repeat Simple_repeat 3 67 0 1856 176 6 3 chr4 35081088 35081417 -149207245 - L1MA9 LINE L1 -514 5798 5469 * 2245 209 71 30 chr4 35081399 35082060 -149206602 - L1MA9 LINE L1 -2481 3665 2978 2711 237 20 24 chr4 35082060 35082866 -149205796 + L1MA9 LINE L1 2402 3206 -3176 27 0 0 0 chr4 35083129 35083156 -149205506 + AT_rich Low_complexity Low_complexity 1 27 0 1988 136 0 0 chr4 35083272 35083559 -149205103 - AluSx SINE Alu -15 297 11 1625 224 102 43 chr4 35083692 35084440 -149204222 - LTR1B LTR ERV1 -1 784 1 675 161 8 15 chr4 35084719 35084849 -149203813 + AluSq/x SINE Alu 5 133 -180 616 297 91 7 chr4 35086644 35086920 -149201742 + LTR33A LTR ERVL 225 523 0 232 336 45 9 chr4 35087581 35087691 -149200971 - MIR SINE MIR -24 238 125 708 238 33 99 chr4 35089030 35089333 -149199329 + MLT1B LTR MaLR 103 385 -5 21 0 0 0 chr4 35090032 35090053 -149198609 + AT_rich Low_complexity Low_complexity 1 21 0 368 304 116 29 chr4 35090781 35090919 -149197743 - L2 LINE L2 0 3272 3123 25 31 0 0 chr4 35091047 35091079 -149197583 + AT_rich Low_complexity Low_complexity 1 32 0 180 265 0 0 chr4 35092774 35092808 -149195854 - L3 LINE CR1 -1456 121 88 4705 58 3 0 chr4 35093350 35093939 -149194723 - LTR10C LTR ERV1 0 591 1 357 62 0 0 chr4 35094159 35094207 -149194455 + (TC)n Simple_repeat Simple_repeat 1 48 0 517 282 17 55 chr4 35094539 35094720 -149193942 - L2 LINE L2 -224 3089 2916 1598 219 14 19 chr4 35094851 35095211 -149193451 - MLT1A1 LTR MaLR -7 358 1 214 304 193 22 chr4 35095901 35096082 -149192580 + MIR SINE MIR 40 251 -11 27 0 0 0 chr4 35096851 35096878 -149191784 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr4 35097040 35097061 -149191601 + AT_rich Low_complexity Low_complexity 1 21 0 198 103 0 0 chr4 35097975 35098004 -149190658 + (CAGAGA)n Simple_repeat Simple_repeat 2 30 0 2092 100 3 14 chr4 35098093 35098383 -149190279 + AluSp SINE Alu 1 287 -26 244 225 50 25 chr4 35098423 35098503 -149190159 + L1MC4 LINE L1 6614 6695 -1347 399 309 0 0 chr4 35098549 35098727 -149189935 + (CATG)n Simple_repeat Simple_repeat 2 179 0 26 74 0 0 chr4 35099418 35099472 -149189190 + AT_rich Low_complexity Low_complexity 1 54 0 208 353 26 17 chr4 35100009 35100125 -149188537 + MIR SINE MIR 132 248 -14 634 254 105 22 chr4 35100180 35100408 -149188254 + LTR16C LTR ERVL 238 484 -7 304 258 11 22 chr4 35101448 35101537 -149187125 + L1PA15-16 LINE L1 21 108 -6754 * 3264 276 31 29 chr4 35101529 35102665 -149185997 + L1PA15-16 LINE L1 496 1633 -5230 * 5451 219 24 6 chr4 35102636 35105642 -149183020 + L1PB3 LINE L1 1 3196 -3007 4434 106 9 3 chr4 35105634 35106288 -149182374 + L1PA8 LINE L1 4316 4973 -1173 * 6467 84 8 8 chr4 35106389 35107346 -149181316 + L1PA8 LINE L1 5216 6172 0 8728 192 32 26 chr4 35107355 35110364 -149178298 + L1PB3 LINE L1 3179 6209 -2 21 0 0 0 chr4 35110369 35110390 -149178272 + AT_rich Low_complexity Low_complexity 1 21 0 1471 198 4 0 chr4 35110619 35110887 -149177775 + L1PBa LINE L1 1376 1644 -5219 * 2918 198 13 30 chr4 35110854 35111476 -149177186 + L1PB2 LINE L1 8 618 -5586 319 203 43 0 chr4 35111477 35111546 -149177116 - L1PBb LINE L1 -6099 105 34 * 11371 238 26 26 chr4 35111526 35111594 -149177068 + L1PB2 LINE L1 606 673 -5530 180 0 0 0 chr4 35111594 35111614 -149177048 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 11371 238 26 26 chr4 35111614 35112516 -149176146 + L1PB2 LINE L1 673 1574 -4629 1795 188 122 8 chr4 35112516 35112900 -149175762 + MSTA LTR MaLR 1 428 0 2509 139 3 0 chr4 35112903 35113284 -149175378 + MSTA-int LTR MaLR 4 385 -1195 8579 190 27 3 chr4 35112904 35114512 -149174150 + MSTA-int LTR MaLR 5 1651 0 11371 238 26 26 chr4 35113284 35114512 -149174150 + L1PB2 LINE L1 1576 2803 -3400 1719 163 137 11 chr4 35114512 35114892 -149173770 + MSTA LTR MaLR 1 428 0 11371 238 26 26 chr4 35114892 35117158 -149171504 + L1PB2 LINE L1 2803 3929 -2274 2324 78 7 3 chr4 35117158 35117466 -149171196 + AluY SINE Alu 3 311 0 11371 238 26 26 chr4 35117466 35118549 -149170113 + L1PB2 LINE L1 3929 5011 -1192 291 119 22 50 chr4 35118549 35118633 -149170029 + AluSc SINE Alu 1 46 -262 295 222 0 16 chr4 35118780 35118843 -149169819 + AluSc SINE Alu 7 68 -240 1649 128 0 8 chr4 35118845 35119111 -149169551 + AluSc SINE Alu 54 317 0 5376 153 7 24 chr4 35119118 35120291 -149168371 + L1PB2 LINE L1 5050 6206 -2 246 250 9 65 chr4 35120587 35120695 -149167967 + A-rich Low_complexity Low_complexity 2 103 0 246 352 66 0 chr4 35120832 35120923 -149167739 - L2 LINE L2 -1 3312 3216 188 297 31 62 chr4 35121993 35122121 -149166541 - L2 LINE L2 -605 2709 2586 275 365 13 6 chr4 35122476 35122632 -149166030 + L2 LINE L2 2149 2305 -1009 1458 160 39 47 chr4 35122677 35122762 -149165900 - Charlie5 DNA MER1_type -8 2616 2532 189 0 0 0 chr4 35122762 35122783 -149165879 + (TTTAA)n Simple_repeat Simple_repeat 3 23 0 653 93 70 78 chr4 35122788 35122917 -149165745 - L1MA9 LINE L1 -5 6307 6180 1458 160 39 47 chr4 35122917 35123207 -149165455 - Charlie5 DNA MER1_type -96 2528 2238 564 340 220 0 chr4 35123307 35123497 -149165165 + L2 LINE L2 2314 2461 -853 202 54 27 27 chr4 35123497 35123534 -149165128 + (TA)n Simple_repeat Simple_repeat 1 37 0 564 340 220 0 chr4 35123534 35123716 -149164946 + L2 LINE L2 2461 2768 -546 23 33 0 0 chr4 35123716 35123746 -149164916 + AT_rich Low_complexity Low_complexity 1 30 0 671 294 0 16 chr4 35124003 35124190 -149164472 + MIR SINE MIR 63 246 -16 3063 200 42 83 chr4 35124500 35125509 -149163153 + LTR5 LTR ERVK 1 967 -2 498 124 124 10 chr4 35125587 35125684 -149162978 - MER101B LTR ERV1 -462 108 1 282 254 63 48 chr4 35125689 35125815 -149162847 + L2 LINE L2 3168 3295 -18 2939 114 14 0 chr4 35125882 35126310 -149162352 + MER57B LTR ERV1 1 434 0 3807 172 30 11 chr4 35126310 35126974 -149161688 + MER57B-int LTR ERV1 1 677 -6860 1302 97 0 0 chr4 35126973 35127148 -149161514 + MER57B-int LTR ERV1 793 967 -6570 * 3202 137 25 27 chr4 35127142 35127659 -149161003 + MER57B-int LTR ERV1 1346 1861 -5676 * 11031 136 34 13 chr4 35127656 35128727 -149159935 + MER57B-int LTR ERV1 5321 6447 -1090 2136 130 0 7 chr4 35128727 35129028 -149159634 - AluSc SINE Alu -10 299 1 11031 136 34 13 chr4 35129028 35129748 -149158914 + MER57B-int LTR ERV1 6447 7150 -387 745 131 25 8 chr4 35129748 35129870 -149158792 + LTR54B LTR ERV1 5 128 -370 1462 100 130 4 chr4 35129882 35130113 -149158549 + MER57B-int LTR ERV1 7278 7537 0 2916 127 5 0 chr4 35130113 35130545 -149158117 + MER57B LTR ERV1 1 434 0 309 306 0 35 chr4 35130861 35130946 -149157716 + MIR3 SINE MIR 87 168 -40 232 255 0 0 chr4 35130958 35131009 -149157653 + MER34C LTR ERV1 40 90 -495 1054 236 57 67 chr4 35131029 35131502 -149157160 + LTR29 LTR ERV1 137 644 0 2605 35 0 6 chr4 35131725 35132037 -149156625 - AluY SINE Alu -1 310 1 1979 173 5 22 chr4 35132228 35132597 -149156065 - MER4E LTR ERV1 0 779 417 626 308 66 31 chr4 35132614 35132900 -149155762 - L2 LINE L2 -15 3298 3003 3245 84 29 5 chr4 35133138 35133580 -149155082 - MLT2A2 LTR ERVL 0 453 1 44 35 0 0 chr4 35134187 35134245 -149154417 + AT_rich Low_complexity Low_complexity 1 58 0 180 0 0 0 chr4 35135645 35135665 -149152997 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1889 149 0 4 chr4 35135668 35135949 -149152713 - AluSx SINE Alu -32 280 1 210 37 0 0 chr4 35135999 35136026 -149152636 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 * 378 0 0 0 chr4 35136025 35136067 -149152595 + (TA)n Simple_repeat Simple_repeat 2 43 0 558 330 21 11 chr4 35136529 35136720 -149151942 - MIR SINE MIR -33 229 37 252 0 0 0 chr4 35138005 35138033 -149150629 + (CA)n Simple_repeat Simple_repeat 2 29 0 2562 156 42 0 chr4 35138394 35138818 -149149844 + L1M1 LINE L1 1756 2197 -5368 * 4668 114 35 3 chr4 35138810 35139564 -149149098 + L1M1 LINE L1 2488 3265 -4300 236 204 20 0 chr4 35139869 35139918 -149148744 - L2 LINE L2 0 3313 3264 344 264 112 8 chr4 35139961 35140086 -149148576 - LTR16C LTR ERVL 0 491 354 256 304 29 0 chr4 35140125 35140194 -149148468 - LTR16C LTR ERVL -202 289 219 246 265 143 41 chr4 35140206 35140304 -149148358 - LTR16C LTR ERVL -383 108 1 246 267 22 67 chr4 35140582 35140672 -149147990 - L2 LINE L2 -2 3311 3226 274 306 9 45 chr4 35140916 35141027 -149147635 + MER5A DNA MER1_type 55 161 -28 6652 112 26 25 chr4 35141120 35142190 -149146472 + MER11C LTR ERVK 1 1071 0 22 35 0 0 chr4 35142558 35142587 -149146075 + AT_rich Low_complexity Low_complexity 1 29 0 315 0 0 0 chr4 35143020 35143055 -149145607 + (TG)n Simple_repeat Simple_repeat 2 36 0 859 157 0 0 chr4 35144823 35144957 -149143705 - FRAM SINE Alu -42 134 1 323 239 14 14 chr4 35145665 35145736 -149142926 - MER2 DNA MER2_type -5 340 270 907 191 34 6 chr4 35145780 35145958 -149142704 - MER2 DNA MER2_type -159 186 4 27 0 0 0 chr4 35146739 35146766 -149141896 + AT_rich Low_complexity Low_complexity 1 27 0 373 278 6 23 chr4 35146935 35147111 -149141551 - L1M4 LINE L1 -1087 5059 4887 236 303 0 0 chr4 35147658 35147747 -149140915 + L1MC4 LINE L1 6614 6702 -1340 2128 90 138 14 chr4 35147756 35148112 -149140550 - MLT2A1 LTR ERVL -44 400 1 1980 274 90 71 chr4 35149120 35150190 -149138472 + MER52A LTR ERV1 666 1755 0 26 64 0 0 chr4 35151361 35151408 -149137254 + AT_rich Low_complexity Low_complexity 1 47 0 23 0 0 0 chr4 35152485 35152508 -149136154 + AT_rich Low_complexity Low_complexity 1 23 0 9038 273 44 17 chr4 35152538 35157099 -149131563 + L1PA12 LINE L1 881 5559 -2025 4242 228 17 9 chr4 35157083 35158135 -149130527 - L1 LINE L1 -952 5194 4135 * 1154 201 18 36 chr4 35158130 35158408 -149130254 + L1 LINE L1 3866 4138 -2008 * 316 284 83 61 chr4 35158413 35158642 -149130020 + L1ME2 LINE L1 5921 6154 -10 232 208 57 0 chr4 35158802 35158855 -149129807 + L1MC4 LINE L1 7924 7979 -63 1559 256 85 11 chr4 35158921 35159448 -149129214 + L1ME2 LINE L1 5599 6164 0 304 283 71 30 chr4 35159586 35159685 -149128977 - MER5A DNA MER1_type -77 112 10 335 355 91 14 chr4 35159689 35159985 -149128677 + L3 LINE CR1 1180 1498 -79 663 200 0 15 chr4 35159985 35160120 -149128542 + FLAM_A SINE Alu 1 133 0 354 23 0 0 chr4 35160164 35160207 -149128455 + (TG)n Simple_repeat Simple_repeat 2 44 0 21 82 0 0 chr4 35160404 35160453 -149128209 + AT_rich Low_complexity Low_complexity 1 49 0 24 106 0 0 chr4 35161944 35162038 -149126624 + AT_rich Low_complexity Low_complexity 1 94 0 6090 55 0 0 chr4 35162346 35163103 -149125559 - L1PA5 LINE L1 -2 6152 5396 227 241 0 96 chr4 35164448 35164531 -149124131 - MIR SINE MIR -71 191 117 217 346 149 9 chr4 35164526 35164633 -149124029 + MIR SINE MIR 22 143 -119 * 24 32 0 0 chr4 35164713 35164744 -149123918 + AT_rich Low_complexity Low_complexity 1 31 0 23 54 0 0 chr4 35166088 35166125 -149122537 + AT_rich Low_complexity Low_complexity 1 37 0 37 23 0 0 chr4 35166958 35167002 -149121660 + AT_rich Low_complexity Low_complexity 1 44 0 291 339 35 58 chr4 35167105 35167279 -149121383 + MIR SINE MIR 1 170 -92 2055 140 0 9 chr4 35167790 35168105 -149120557 + AluSx SINE Alu 1 312 0 1954 138 3 3 chr4 35168695 35169000 -149119662 - AluSx SINE Alu 0 305 1 27 73 0 0 chr4 35169954 35170009 -149118653 + AT_rich Low_complexity Low_complexity 1 55 0 24 0 0 0 chr4 35170697 35170721 -149117941 + AT_rich Low_complexity Low_complexity 1 24 0 1033 268 94 45 chr4 35172014 35172497 -149116165 + MLT1H LTR MaLR 1 549 0 317 225 42 0 chr4 35173387 35173458 -149115204 + MER20 DNA MER1_type 2 75 -144 1051 270 68 36 chr4 35173531 35174368 -149114294 + L1MA7 LINE L1 2008 2952 -4544 452 260 29 10 chr4 35174368 35174472 -149114190 - Tigger7 DNA MER2_type 0 2487 2382 890 291 5 0 chr4 35174483 35174706 -149113956 - Tigger7 DNA MER2_type -2263 224 1 685 255 48 13 chr4 35174712 35174943 -149113719 + L1MA7 LINE L1 2841 3079 -4486 520 266 73 43 chr4 35174972 35175205 -149113457 + L1MA7 LINE L1 3634 3873 -3692 513 245 23 24 chr4 35175245 35175419 -149113243 - L1M4 LINE L1 -3834 2312 2131 8430 205 47 38 chr4 35175440 35177587 -149111075 + L1MA7 LINE L1 4125 6251 -1459 1926 132 7 0 chr4 35177587 35177860 -149110802 + AluSp SINE Alu 16 290 -23 8430 205 47 38 chr4 35177860 35178897 -149109765 + L1MA7 LINE L1 6251 7427 -283 2003 132 0 22 chr4 35178897 35179191 -149109471 + AluSx SINE Alu 1 289 -23 801 31 0 0 chr4 35179191 35179287 -149109375 + (GAGAA)n Simple_repeat Simple_repeat 2 97 0 2003 132 0 22 chr4 35179287 35179303 -149109359 + AluSx SINE Alu 289 304 -8 8430 205 47 38 chr4 35179303 35179584 -149109078 + L1MA7 LINE L1 7427 7704 -6 885 135 0 0 chr4 35180173 35180299 -149108363 - FLAM_C SINE Alu -17 126 1 209 345 78 17 chr4 35181146 35181262 -149107400 - L2 LINE L2 0 3313 3191 197 343 120 0 chr4 35181340 35181448 -149107214 - L2 LINE L2 -9 3263 3143 314 328 175 26 chr4 35181762 35182070 -149106592 - L2 LINE L2 -737 2577 2224 602 157 0 44 chr4 35184227 35184386 -149104276 + GA-rich Low_complexity Low_complexity 4 155 0 22 35 0 0 chr4 35186130 35186159 -149102503 + AT_rich Low_complexity Low_complexity 1 29 0 3160 203 29 30 chr4 35186324 35187083 -149101579 - L1MB7 LINE L1 -12 6172 5415 21 0 0 0 chr4 35187174 35187195 -149101467 + AT_rich Low_complexity Low_complexity 1 21 0 242 29 29 0 chr4 35187335 35187370 -149101292 + (TA)n Simple_repeat Simple_repeat 1 36 0 2066 109 26 7 chr4 35187641 35187944 -149100718 + AluSx SINE Alu 4 312 0 1731 160 98 3 chr4 35188777 35189145 -149099517 + MER57A LTR ERV1 1 403 0 3457 214 9 55 chr4 35189153 35190009 -149098653 + MER57A-int LTR ERV1 9 825 -6712 221 241 36 43 chr4 35190082 35190179 -149098483 - MIR SINE MIR -95 113 16 2521 42 0 0 chr4 35190349 35190659 -149098003 + AluY SINE Alu 1 310 -1 455 239 148 68 chr4 35191272 35191536 -149097126 + MER34C LTR ERV1 157 441 -144 305 191 0 0 chr4 35191571 35191639 -149097023 + MER57A-int LTR ERV1 1120 1187 -3684 452 211 40 80 chr4 35191743 35191918 -149096744 + LTR49-int LTR ERV1 3088 3255 -3076 1498 188 26 10 chr4 35192024 35192327 -149096335 + LTR49-int LTR ERV1 5283 5590 -1947 1002 54 27 0 chr4 35192338 35192487 -149096175 + (TTTC)n Simple_repeat Simple_repeat 2 154 0 1861 104 0 0 chr4 35192502 35192743 -149095919 - AluSc SINE Alu -68 241 1 3108 211 24 22 chr4 35192747 35193420 -149095242 + LTR49-int LTR ERV1 6469 7142 -395 591 150 15 45 chr4 35193420 35193553 -149095109 + LTR54B LTR ERV1 1 129 -369 261 200 50 0 chr4 35193607 35193667 -149094995 + LTR54B LTR ERV1 226 288 -210 1697 88 121 4 chr4 35194895 35195144 -149093518 + AluSc SINE Alu 1 278 -31 186 43 0 0 chr4 35195148 35195171 -149093491 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 363 323 31 12 chr4 35195982 35196166 -149092496 - MIR3 SINE MIR -66 142 4 1336 166 154 37 chr4 35196271 35196596 -149092066 - MLT1A1 LTR MaLR 0 365 3 2178 208 13 23 chr4 35196895 35197145 -149091517 + MLT1C LTR MaLR 1 245 -222 1989 138 128 10 chr4 35197145 35197528 -149091134 + MSTA LTR MaLR 1 428 0 2178 208 13 23 chr4 35197528 35197749 -149090913 + MLT1C LTR MaLR 245 467 0 279 0 0 0 chr4 35198747 35198778 -149089884 + (CA)n Simple_repeat Simple_repeat 2 32 0 374 310 26 0 chr4 35199573 35199686 -149088976 + MIR3 SINE MIR 87 202 -6 333 264 14 89 chr4 35199790 35199958 -149088704 - MIR SINE MIR -42 220 64 271 303 48 101 chr4 35199993 35200409 -149088253 + MLT1I LTR MaLR 9 402 -7 23 68 0 0 chr4 35200722 35200766 -149087896 + AT_rich Low_complexity Low_complexity 1 44 0 463 283 24 6 chr4 35200792 35200958 -149087704 - MLT2E LTR ERVL -8 620 452 952 308 26 4 chr4 35201032 35201298 -149087364 - MLT2E LTR ERVL -332 296 25 22 0 0 0 chr4 35201436 35201458 -149087204 + AT_rich Low_complexity Low_complexity 1 22 0 214 317 30 0 chr4 35202735 35202836 -149085826 + (TATG)n Simple_repeat Simple_repeat 1 104 0 226 284 14 27 chr4 35203657 35203731 -149084931 - L2 LINE L2 -11 3302 3230 1699 149 67 69 chr4 35203859 35204235 -149084427 + THE1C LTR MaLR 1 375 0 212 143 18 71 chr4 35206684 35206740 -149081922 + GA-rich Low_complexity Low_complexity 2 54 0 328 133 24 0 chr4 35206760 35206843 -149081819 + (TA)n Simple_repeat Simple_repeat 2 86 0 275 379 25 68 chr4 35207412 35207734 -149080928 - L2 LINE L2 0 3272 2965 2021 123 0 32 chr4 35207738 35208048 -149080614 + AluSp SINE Alu 1 300 -13 2062 151 83 8 chr4 35208339 35208737 -149079925 + MSTA LTR MaLR 1 428 0 379 298 43 25 chr4 35209101 35209262 -149079400 + MIR3 SINE MIR 43 206 -2 2123 97 0 39 chr4 35209376 35209684 -149078978 - AluSp SINE Alu -17 296 1 607 240 76 32 chr4 35210028 35210278 -149078384 - LTR33A LTR ERVL 0 523 263 211 323 8 46 chr4 35210459 35210589 -149078073 + L2 LINE L2 2379 2503 -811 368 324 99 32 chr4 35211639 35211892 -149076770 + MLT1I LTR MaLR 134 403 -6 300 224 0 0 chr4 35212694 35212792 -149075870 + (TA)n Simple_repeat Simple_repeat 2 99 0 1428 197 3 28 chr4 35212802 35213091 -149075571 - AluJb SINE Alu -26 286 5 207 0 0 0 chr4 35213546 35213569 -149075093 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 22 35 0 0 chr4 35214056 35214085 -149074577 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr4 35214200 35214228 -149074434 + AT_rich Low_complexity Low_complexity 1 28 0 751 319 26 63 chr4 35215589 35215940 -149072722 - MLT1H LTR MaLR -199 350 13 1980 127 0 29 chr4 35216349 35216657 -149072005 - AluSg SINE Alu -11 299 1 34 24 0 0 chr4 35216999 35217040 -149071622 + AT_rich Low_complexity Low_complexity 1 41 0 233 402 10 10 chr4 35217106 35217208 -149071454 - MIR SINE MIR -74 134 33 2236 71 47 14 chr4 35217368 35217665 -149070997 + AluY SINE Alu 3 309 -2 2229 91 0 0 chr4 35217751 35218037 -149070625 + AluSx SINE Alu 1 286 -26 419 264 31 8 chr4 35219341 35219470 -149069192 + MER94 DNA DNA 2 133 -1 27 0 0 0 chr4 35219503 35219530 -149069132 + AT_rich Low_complexity Low_complexity 1 27 0 747 242 59 53 chr4 35220305 35220704 -149067958 + MLT1A1 LTR MaLR 1 383 -13 2714 267 20 8 chr4 35221302 35222177 -149066485 - L1PA15-16 LINE L1 -3060 3789 2904 3164 151 34 105 chr4 35222177 35223149 -149065513 + MER52C LTR ERV1 403 1276 -2 437 356 63 3 chr4 35224377 35224431 -149064231 - L2 LINE L2 -98 3215 3166 2130 112 10 0 chr4 35224431 35224726 -149063936 + AluY SINE Alu 1 298 -13 437 356 63 3 chr4 35224726 35224955 -149063707 - L2 LINE L2 -147 3166 2915 1105 246 69 81 chr4 35224992 35225064 -149063598 + MLT1D LTR MaLR 91 162 -343 2505 83 128 2 chr4 35225064 35225462 -149063200 - LTR7 LTR ERV1 -2 448 1 1105 246 69 81 chr4 35225462 35225807 -149062855 + MLT1D LTR MaLR 162 503 -2 396 321 31 13 chr4 35225852 35226076 -149062586 - L2 LINE L2 -1619 1695 1468 1421 71 115 2 chr4 35226142 35226480 -149062182 - LTR7 LTR ERV1 -2 448 1 186 43 0 0 chr4 35227202 35227225 -149061437 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2111 127 3 0 chr4 35227228 35227520 -149061142 + AluSq SINE Alu 1 293 -20 1636 190 44 33 chr4 35228322 35228685 -149059977 - MLT1A2 LTR MaLR 0 374 8 684 308 108 36 chr4 35229003 35230069 -149058593 + L1ME3 LINE L1 3009 4151 -1995 532 302 77 30 chr4 35230358 35230806 -149057856 + L1ME3 LINE L1 4543 5015 -1131 263 206 198 24 chr4 35230943 35231069 -149057593 + L1ME3 LINE L1 5186 5333 -813 33 43 0 0 chr4 35231099 35231146 -149057516 + AT_rich Low_complexity Low_complexity 1 47 0 447 303 111 33 chr4 35231215 35231516 -149057146 + L1ME3 LINE L1 5466 5805 -357 598 312 18 5 chr4 35231516 35231737 -149056925 + MER58A DNA MER1_type 1 224 0 447 303 111 33 chr4 35231737 35231824 -149056838 + L1ME3 LINE L1 5805 5884 -278 2098 104 35 0 chr4 35232275 35232564 -149056098 + AluSp SINE Alu 1 299 -14 232 325 229 0 chr4 35232692 35232858 -149055804 + MIR SINE MIR 40 243 -19 28 0 0 0 chr4 35232917 35232945 -149055717 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 35233442 35233463 -149055199 + AT_rich Low_complexity Low_complexity 1 21 0 186 43 0 0 chr4 35233701 35233724 -149054938 + (T)n Simple_repeat Simple_repeat 1 23 0 204 102 61 0 chr4 35234214 35234263 -149054399 + (TA)n Simple_repeat Simple_repeat 1 52 0 336 24 0 0 chr4 35234571 35234612 -149054050 + (CA)n Simple_repeat Simple_repeat 2 42 0 289 280 0 32 chr4 35234900 35235000 -149053662 - MIR SINE MIR -35 173 80 474 335 13 6 chr4 35236182 35236340 -149052322 - LTR33 LTR ERVL -362 159 1 2636 124 29 7 chr4 35236360 35236779 -149051883 - MSTA LTR MaLR 0 428 1 24 0 0 0 chr4 35237182 35237206 -149051456 + AT_rich Low_complexity Low_complexity 1 24 0 342 205 36 0 chr4 35239146 35239229 -149049433 + L1MC1 LINE L1 6248 6333 0 296 62 0 42 chr4 35239455 35239503 -149049159 + (TTTC)n Simple_repeat Simple_repeat 3 48 0 589 181 35 6 chr4 35239510 35239681 -149048981 + CT-rich Low_complexity Low_complexity 2 177 0 1603 215 0 6 chr4 35239685 35239997 -149048665 - AluJo SINE Alu -2 310 1 184 89 22 22 chr4 35240550 35240595 -149048067 + (TTA)n Simple_repeat Simple_repeat 2 46 0 44 56 0 0 chr4 35240597 35240669 -149047993 + AT_rich Low_complexity Low_complexity 1 72 0 435 321 33 37 chr4 35240755 35240998 -149047664 - L1ME4a LINE L1 -188 5933 5692 217 143 18 71 chr4 35242180 35242236 -149046426 + T-rich Low_complexity Low_complexity 1 53 0 28 0 0 0 chr4 35243475 35243503 -149045159 + AT_rich Low_complexity Low_complexity 1 28 0 1824 130 18 18 chr4 35243750 35244035 -149044627 + AluSx SINE Alu 1 285 -27 222 379 7 14 chr4 35245287 35245432 -149043230 + L3b LINE CR1 1111 1254 -329 3139 169 72 83 chr4 35245866 35246945 -149041717 - L1MA6 LINE L1 -7 6290 5171 425 335 97 5 chr4 35246984 35247169 -149041493 + MIR SINE MIR 61 262 0 405 311 146 33 chr4 35247170 35247382 -149041280 - MIR SINE MIR -26 236 1 348 286 76 54 chr4 35248580 35248804 -149039858 - L1MC4a LINE L1 -1905 5903 5675 2759 19 0 0 chr4 35248974 35249285 -149039377 + AluYa5 SINE Alu 1 311 0 208 254 32 48 chr4 35249662 35249725 -149038937 + L2 LINE L2 3248 3309 -4 2671 190 19 2 chr4 35249803 35250282 -149038380 + MLT2B1 LTR ERVL 1 487 -33 500 366 124 19 chr4 35250481 35251044 -149037618 + L2 LINE L2 943 1564 -1750 23 0 0 0 chr4 35251312 35251335 -149037327 + AT_rich Low_complexity Low_complexity 1 23 0 33 0 0 0 chr4 35254844 35254877 -149033785 + AT_rich Low_complexity Low_complexity 1 33 0 385 102 0 0 chr4 35255066 35255125 -149033537 + Alu SINE Alu 244 302 0 1915 203 20 50 chr4 35255387 35255825 -149032837 - MSTB LTR MaLR -1 425 1 358 288 100 31 chr4 35257866 35258095 -149030567 - L2 LINE L2 -338 2976 2732 276 125 0 0 chr4 35258605 35258645 -149030017 + Alu SINE Alu 1 40 -268 598 118 0 0 chr4 35258645 35258730 -149029932 + AluSg/x SINE Alu 206 290 -20 1607 214 19 3 chr4 35258731 35259054 -149029608 - MER4D LTR ERV1 -28 875 548 3031 162 66 11 chr4 35259165 35259319 -149029343 - MER4D LTR ERV1 -329 574 430 2251 150 28 2 chr4 35259319 35259712 -149028950 - MER57A LTR ERV1 0 403 1 3031 162 66 11 chr4 35259712 35260099 -149028563 - MER4D LTR ERV1 -473 430 3 60 69 0 0 chr4 35260161 35260277 -149028385 + AT_rich Low_complexity Low_complexity 1 116 0 368 55 18 0 chr4 35260297 35260352 -149028310 + (TA)n Simple_repeat Simple_repeat 2 57 0 1657 156 53 14 chr4 35260359 35260642 -149028020 - AluSq SINE Alu -19 294 1 29 0 0 0 chr4 35260651 35260680 -149027982 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr4 35260783 35260805 -149027857 + AT_rich Low_complexity Low_complexity 1 22 0 536 369 58 14 chr4 35260868 35261299 -149027363 - L1 LINE L1 -743 5403 4954 721 91 0 18 chr4 35261313 35261423 -149027239 + AluY SINE Alu 198 305 -6 2520 233 100 5 chr4 35261518 35262266 -149026396 - MER97a DNA MER1_type? -14 880 62 31 26 0 0 chr4 35263488 35263526 -149025136 + AT_rich Low_complexity Low_complexity 1 38 0 204 231 0 0 chr4 35263935 35263974 -149024688 + (CATA)n Simple_repeat Simple_repeat 2 40 0 243 190 0 52 chr4 35263979 35264037 -149024625 - LTR66 LTR ERVL -171 439 385 316 359 39 32 chr4 35264264 35264420 -149024242 - MIR SINE MIR -78 184 28 2965 221 13 9 chr4 35264574 35265319 -149023343 - L1PA16 LINE L1 -752 5394 4647 * 4012 146 19 5 chr4 35265318 35265988 -149022674 + L1PA16 LINE L1 5402 6081 -85 979 190 20 20 chr4 35266129 35266376 -149022286 - L1 LINE L1 -752 5394 5148 317 172 62 0 chr4 35266374 35266438 -149022224 - L1MA7 LINE L1 -51 6240 6173 * 296 118 191 0 chr4 35266432 35266500 -149022162 + L1PA16 LINE L1 6077 6157 -9 * 998 127 0 20 chr4 35266821 35267014 -149021648 + AluSg/x SINE Alu 137 326 0 22 80 0 0 chr4 35267448 35267498 -149021164 + AT_rich Low_complexity Low_complexity 1 50 0 4184 195 19 8 chr4 35268170 35269695 -149018967 - L1MA7 LINE L1 -42 6249 4669 763 234 206 8 chr4 35270485 35270883 -149017779 - MER69 DNA AcHobo -40 2486 2010 * 1157 309 121 14 chr4 35270875 35271379 -149017283 - MER69 DNA AcHobo -652 574 17 1877 117 26 4 chr4 35272607 35272911 -149015751 - AluSg SINE Alu 0 320 11 23 0 0 0 chr4 35272954 35272977 -149015685 + AT_rich Low_complexity Low_complexity 1 23 0 3237 257 51 38 chr4 35273436 35275175 -149013487 + L1M4b LINE L1 29 2024 -4831 863 255 23 0 chr4 35275196 35275459 -149013203 + L1M4b LINE L1 3080 3348 -3609 2307 105 0 9 chr4 35275461 35275776 -149012886 + AluSx SINE Alu 1 312 0 3903 202 46 1 chr4 35275795 35276641 -149012021 - L1MC2 LINE L1 -11 6333 5450 225 94 0 0 chr4 35277221 35277253 -149011409 + (TA)n Simple_repeat Simple_repeat 1 32 0 293 282 8 8 chr4 35277809 35277926 -149010736 + (TA)n Simple_repeat Simple_repeat 1 117 0 24 32 0 0 chr4 35278140 35278171 -149010491 + AT_rich Low_complexity Low_complexity 1 31 0 339 245 10 31 chr4 35278315 35278413 -149010249 - MIR SINE MIR -119 143 48 838 72 0 0 chr4 35279806 35279917 -149008745 + L1PA6 LINE L1 6044 6154 0 312 258 0 0 chr4 35280041 35280138 -149008524 + (TA)n Simple_repeat Simple_repeat 1 97 0 1410 241 22 22 chr4 35280160 35280525 -149008137 - MLT1A1 LTR MaLR 0 365 1 273 240 66 41 chr4 35281834 35281955 -149006707 + L2 LINE L2 3181 3304 -9 23 0 0 0 chr4 35282544 35282567 -149006095 + AT_rich Low_complexity Low_complexity 1 23 0 675 330 88 4 chr4 35282947 35283220 -149005442 - LTR16A LTR ERVL 0 450 155 1325 211 176 24 chr4 35283609 35284059 -149004603 + MLT2B1 LTR ERVL 1 518 -2 8772 209 29 31 chr4 35284062 35285912 -149002750 + ERVL-B1-B1 LTR ERVL 2 1848 -3916 6990 120 3 7 chr4 35285912 35286921 -149001741 + THE1B-int LTR MaLR 576 1580 0 2193 131 19 25 chr4 35286921 35287287 -149001375 + THE1B LTR MaLR 1 364 0 2837 191 55 28 chr4 35287289 35287898 -149000764 - L1 LINE L1 -813 5333 4699 248 68 0 23 chr4 35287898 35287942 -149000720 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 2837 191 55 28 chr4 35287942 35288080 -149000582 - L1 LINE L1 -1447 4699 4566 521 209 9 0 chr4 35288084 35288199 -149000463 - L1 LINE L1 -1896 4250 4135 3793 200 20 0 chr4 35288221 35289011 -148999651 + L1PA15-16 LINE L1 1980 2785 -4064 12013 202 13 10 chr4 35289011 35291258 -148997404 + ERVL-B1-B1 LTR ERVL 2709 4962 -802 1061 191 0 0 chr4 35291300 35291478 -148997184 - ERVL LTR ERVL -607 5157 4980 * 2079 174 23 79 chr4 35291477 35292006 -148996656 + ERVL-B1-B1 LTR ERVL 5257 5755 -9 2039 206 48 48 chr4 35292008 35292528 -148996134 + MLT2B1 LTR ERVL 1 520 0 290 329 67 12 chr4 35293320 35293484 -148995178 + MLT1J2 LTR MaLR 64 236 -214 909 288 115 59 chr4 35293577 35294600 -148994062 - HAL1 LINE L1 -803 1704 624 197 279 66 118 chr4 35295195 35295331 -148993331 + L2 LINE L2 3144 3272 0 21 0 0 0 chr4 35295638 35295659 -148993003 + AT_rich Low_complexity Low_complexity 1 21 0 506 242 137 84 chr4 35295746 35295998 -148992664 + MIR SINE MIR 17 262 0 605 271 8 0 chr4 35296141 35296274 -148992388 - FLAM_A SINE Alu -8 134 1 318 264 112 8 chr4 35297583 35297708 -148990954 + MIR SINE MIR 96 233 -29 7843 95 4 3 chr4 35298589 35300502 -148988160 + L1PA7 LINE L1 4226 6154 0 362 311 42 8 chr4 35300722 35300841 -148987821 - MIR SINE MIR -120 142 20 26 30 0 0 chr4 35302061 35302094 -148986568 + AT_rich Low_complexity Low_complexity 1 33 0 1537 192 13 19 chr4 35302131 35302439 -148986223 - AluJo SINE Alu -2 310 5 1180 210 48 20 chr4 35303407 35303655 -148985007 + AluJb SINE Alu 39 293 -19 835 304 159 20 chr4 35303684 35303743 -148984919 - L1MEd LINE L1 -2833 3296 3247 2047 122 3 0 chr4 35303743 35304055 -148984607 - AluSq SINE Alu 0 313 1 835 304 159 20 chr4 35304055 35304761 -148983901 - L1MEd LINE L1 -2882 3247 2438 256 291 87 0 chr4 35305311 35305414 -148983248 - MIR SINE MIR -5 257 146 1705 193 0 7 chr4 35305836 35306136 -148982526 - AluJb SINE Alu -8 304 7 33 43 0 0 chr4 35306213 35306260 -148982402 + AT_rich Low_complexity Low_complexity 1 47 0 271 301 25 45 chr4 35306278 35306477 -148982185 - L1MEd LINE L1 -4881 1238 1044 34 55 0 0 chr4 35306517 35306572 -148982090 + AT_rich Low_complexity Low_complexity 1 55 0 4398 191 38 13 chr4 35306626 35307468 -148981194 - L1PB4 LINE L1 0 6156 5287 375 41 0 0 chr4 35307468 35307517 -148981145 + (TG)n Simple_repeat Simple_repeat 2 50 0 4398 191 38 13 chr4 35307517 35307796 -148980866 - L1PB4 LINE L1 -869 5287 5017 8465 175 43 6 chr4 35307849 35309436 -148979226 - MSTA-int LTR MaLR -4 1647 2 2219 196 16 7 chr4 35309437 35309861 -148978801 - MSTA LTR MaLR 0 428 1 538 308 87 26 chr4 35309885 35310275 -148978387 - L1MEd LINE L1 -5221 898 485 780 219 0 0 chr4 35310277 35310423 -148978239 + FRAM SINE Alu 1 146 -30 546 67 0 0 chr4 35310425 35310500 -148978162 + (CATA)n Simple_repeat Simple_repeat 2 76 0 419 350 37 37 chr4 35310621 35310944 -148977718 - L1MEd LINE L1 -5733 386 64 555 345 48 16 chr4 35310984 35311300 -148977362 + L2 LINE L2 1876 2201 -1113 250 370 82 19 chr4 35311316 35311633 -148977029 + L2 LINE L2 2687 3023 -249 207 311 67 59 chr4 35311706 35311841 -148976821 - L2 LINE L2 -20 3293 3158 203 403 0 0 chr4 35311944 35312016 -148976646 + L2 LINE L2 3188 3259 -13 719 103 0 0 chr4 35312020 35312127 -148976535 + L1MA4 LINE L1 6188 6294 -6 331 280 7 20 chr4 35314062 35314212 -148974450 + (TA)n Simple_repeat Simple_repeat 1 148 0 574 153 62 49 chr4 35314960 35315104 -148973558 - L1MC2 LINE L1 -9 6335 6190 486 141 12 0 chr4 35315121 35315206 -148973456 + MLT1E1 LTR MaLR 569 654 0 482 150 70 10 chr4 35315206 35315306 -148973356 + L1M LINE L1 5295 5400 -944 1782 162 5 50 chr4 35315368 35315744 -148972918 - L1MC2 LINE L1 -190 6154 5796 1927 240 30 91 chr4 35315747 35315763 -148972899 - L1MC2 LINE L1 -522 5822 5807 2157 129 0 0 chr4 35315763 35316073 -148972589 - AluY SINE Alu 0 311 2 1927 240 30 91 chr4 35316073 35316618 -148972044 - L1MC2 LINE L1 -537 5807 5295 1291 264 30 9 chr4 35316618 35316772 -148971890 - MLT1E1 LTR MaLR 0 654 505 1711 166 35 52 chr4 35316772 35317140 -148971522 + THE1B LTR MaLR 1 362 -2 1291 264 30 9 chr4 35317140 35317314 -148971348 - MLT1E1 LTR MaLR -149 505 319 615 263 134 0 chr4 35317332 35317511 -148971151 - MLT1E1 LTR MaLR -399 255 53 1334 190 28 28 chr4 35317710 35317994 -148970668 - LTR32 LTR ERVL -7 464 181 1548 174 48 60 chr4 35318215 35318612 -148970050 + MSTD LTR MaLR 3 394 -2 475 322 133 23 chr4 35318882 35319227 -148969435 + L2 LINE L2 2523 2905 -409 25 75 0 0 chr4 35320247 35320300 -148968362 + AT_rich Low_complexity Low_complexity 1 53 0 2025 212 119 0 chr4 35320313 35320751 -148967911 + MLT1D LTR MaLR 8 497 -8 2086 111 0 7 chr4 35320835 35321123 -148967539 + AluSx SINE Alu 1 286 -26 336 24 0 0 chr4 35321125 35321166 -148967496 + (CA)n Simple_repeat Simple_repeat 1 41 0 2110 99 0 3 chr4 35322214 35322520 -148966142 - AluSx SINE Alu 0 305 1 3608 151 140 8 chr4 35322816 35323546 -148965116 - LTR1B LTR ERV1 0 826 1 367 302 7 40 chr4 35323672 35323821 -148964841 - L1MC2 LINE L1 -1007 5139 4996 2033 128 0 39 chr4 35324310 35324622 -148964040 - AluSx SINE Alu -4 308 9 368 250 43 90 chr4 35324989 35325067 -148963595 - MLT1J LTR MaLR -332 179 99 2428 77 0 0 chr4 35325067 35325378 -148963284 - AluY SINE Alu 0 311 1 368 250 43 90 chr4 35325378 35325487 -148963175 - MLT1J LTR MaLR -412 99 1 21 0 0 0 chr4 35325499 35325520 -148963142 + AT_rich Low_complexity Low_complexity 1 21 0 249 348 106 29 chr4 35326152 35326359 -148962303 + LTR67 LTR ERVL 153 375 -182 247 293 0 0 chr4 35326473 35326531 -148962131 + MER94 DNA DNA 77 134 0 1133 229 8 22 chr4 35327174 35327441 -148961221 + AluJo SINE Alu 6 268 -44 2227 98 20 0 chr4 35328134 35328431 -148960231 - AluSp SINE Alu -10 303 1 190 341 49 67 chr4 35328795 35328959 -148959703 + L2 LINE L2 2810 2970 -344 1451 174 55 26 chr4 35329370 35329681 -148958981 - THE1C LTR MaLR 0 375 56 234 360 52 52 chr4 35331275 35331486 -148957176 + MIR SINE MIR 2 212 -50 584 200 30 122 chr4 35331933 35332228 -148956434 + L1M4 LINE L1 3863 4130 -2016 306 289 0 0 chr4 35332350 35332433 -148956229 + L1MEc LINE L1 1388 1470 -4926 1479 291 100 28 chr4 35332707 35334086 -148954576 + L1MEc LINE L1 2262 3779 -2436 2107 123 40 37 chr4 35334086 35334460 -148954202 - THE1C LTR MaLR 0 375 1 1479 291 100 28 chr4 35334460 35334723 -148953939 + L1MEc LINE L1 3779 4022 -2193 398 291 35 21 chr4 35334988 35335129 -148953533 + L2 LINE L2 2928 3070 -243 1911 128 3 3 chr4 35335576 35335908 -148952754 - AluSx SINE Alu 0 332 1 21 89 0 0 chr4 35335908 35335964 -148952698 + AT_rich Low_complexity Low_complexity 1 56 0 198 264 0 0 chr4 35336519 35336572 -148952090 - L2 LINE L2 0 3313 3261 568 266 36 99 chr4 35336660 35336780 -148951882 + L3 LINE CR1 976 1073 -504 1466 168 7 35 chr4 35336780 35337066 -148951596 - AluJb SINE Alu -33 279 2 568 266 36 99 chr4 35337066 35337197 -148951465 + L3 LINE CR1 1073 1211 -366 186 43 0 0 chr4 35337203 35337226 -148951436 + (TAAAAA)n Simple_repeat Simple_repeat 1 23 0 288 263 35 18 chr4 35337637 35337751 -148950911 + L1MEc LINE L1 2994 3109 -3106 14680 180 181 76 chr4 35337808 35342341 -148946321 + L1P LINE L1 6 5011 -1135 420 314 80 43 chr4 35342583 35343030 -148945632 + L1MEc LINE L1 3614 4077 -2138 256 329 19 17 chr4 35343069 35343247 -148945415 + L1MEc LINE L1 4150 4328 -1887 432 0 0 0 chr4 35343442 35343490 -148945172 + (TG)n Simple_repeat Simple_repeat 2 49 0 1616 205 57 32 chr4 35343506 35343910 -148944752 - LTR52 LTR ERVL -7 414 1 977 272 28 35 chr4 35343910 35344197 -148944465 - LTR52-int LTR ERVL 0 3556 3272 902 229 27 8 chr4 35344181 35344443 -148944219 - LTR52-int LTR ERVL -3255 301 3 * 1489 205 57 27 chr4 35344445 35344850 -148943812 - LTR52 LTR ERVL -3 418 2 472 65 26 0 chr4 35344850 35344927 -148943735 + (TCTA)n Simple_repeat Simple_repeat 2 80 0 33 0 0 0 chr4 35345683 35345716 -148942946 + AT_rich Low_complexity Low_complexity 1 33 0 285 340 42 47 chr4 35346814 35347026 -148941636 + L2 LINE L2 1536 1746 -1568 535 176 37 7 chr4 35347113 35347249 -148941413 + L1MD3 LINE L1 7856 7995 0 355 355 57 32 chr4 35347252 35347531 -148941131 + MLT1I LTR MaLR 124 409 0 803 284 46 63 chr4 35348886 35349158 -148939504 + MLT1I LTR MaLR 66 332 -77 2420 59 0 3 chr4 35349158 35349464 -148939198 - AluY SINE Alu -6 305 1 803 284 46 63 chr4 35349464 35349539 -148939123 + MLT1I LTR MaLR 332 407 -2 753 384 103 21 chr4 35349579 35350684 -148937978 + L2 LINE L2 1782 2977 -337 26 0 0 0 chr4 35351891 35351917 -148936745 + AT_rich Low_complexity Low_complexity 1 26 0 237 196 43 0 chr4 35352928 35352974 -148935688 - MER2 DNA MER2_type 0 345 298 213 39 0 0 chr4 35353015 35353041 -148935621 + (GA)n Simple_repeat Simple_repeat 2 27 0 206 213 43 0 chr4 35353045 35353092 -148935570 + GA-rich Low_complexity Low_complexity 4 52 0 1200 225 33 4 chr4 35353094 35353370 -148935292 - MLT2D LTR ERVL -48 366 83 280 302 94 20 chr4 35353397 35353546 -148935116 + L3 LINE CR1 1139 1298 -279 * 367 300 54 23 chr4 35353538 35353668 -148934994 - L2 LINE L2 0 3313 3180 255 61 0 0 chr4 35353926 35353959 -148934703 + (TCCA)n Simple_repeat Simple_repeat 3 35 0 884 285 105 67 chr4 35354628 35355476 -148933186 - L1ME3A LINE L1 -8 6162 5283 1846 302 102 13 chr4 35355803 35357192 -148931470 - L1ME3A LINE L1 -2499 3647 2135 254 286 87 16 chr4 35357691 35357817 -148930845 - L1M2 LINE L1 -4330 2519 2385 21 0 0 0 chr4 35357845 35357866 -148930796 + AT_rich Low_complexity Low_complexity 1 21 0 414 290 97 0 chr4 35358025 35358170 -148930492 - MIR SINE MIR -27 235 77 284 311 80 33 chr4 35358334 35358485 -148930177 + MIR3 SINE MIR 40 197 -11 219 387 11 0 chr4 35358634 35358727 -148929935 - L3 LINE CR1 -410 1167 1074 26 50 0 0 chr4 35359070 35359110 -148929552 + AT_rich Low_complexity Low_complexity 1 40 0 28 0 0 0 chr4 35359581 35359609 -148929053 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr4 35360350 35360376 -148928286 + AT_rich Low_complexity Low_complexity 1 26 0 1670 184 7 3 chr4 35360384 35360677 -148927985 - AluSx SINE Alu -18 294 1 25 51 0 0 chr4 35360984 35361023 -148927639 + AT_rich Low_complexity Low_complexity 1 39 0 1617 292 13 18 chr4 35361112 35361667 -148926995 + L1M3c LINE L1 1 596 -5545 1423 226 117 52 chr4 35361694 35362137 -148926525 + L1M3c LINE L1 669 1140 -5001 379 297 94 67 chr4 35362336 35363032 -148925630 + L1ME LINE L1 3878 4594 -1552 509 267 0 0 chr4 35363310 35363441 -148925221 - L1PB4 LINE L1 -2 6154 6024 373 281 40 85 chr4 35363505 35363861 -148924801 + MLT1J1 LTR MaLR 68 425 -4 290 47 47 0 chr4 35364162 35364205 -148924457 + (CAAAA)n Simple_repeat Simple_repeat 3 47 0 21 0 0 0 chr4 35365880 35365901 -148922761 + AT_rich Low_complexity Low_complexity 1 21 0 434 336 9 0 chr4 35366487 35366597 -148922065 + MER81 DNA DNA 2 112 -2 261 315 7 56 chr4 35366846 35366989 -148921673 + MIR SINE MIR 66 201 -61 386 310 90 33 chr4 35367876 35368121 -148920541 + MLT1L LTR MaLR 306 564 -51 273 260 27 27 chr4 35368219 35368292 -148920370 - L2 LINE L2 -560 2754 2682 276 321 94 47 chr4 35368858 35369070 -148919592 + MIR SINE MIR 24 245 -17 24 32 0 0 chr4 35370908 35370939 -148917723 + AT_rich Low_complexity Low_complexity 1 31 0 410 336 136 8 chr4 35372362 35372627 -148916035 + L2 LINE L2 2397 2695 -619 976 273 70 47 chr4 35372837 35373369 -148915293 + L1ME LINE L1 5240 5804 -366 892 208 12 0 chr4 35373371 35373539 -148915123 - Tigger5 DNA MER2_type 0 2323 2154 193 347 41 10 chr4 35373707 35373805 -148914857 + L2 LINE L2 2954 3054 -259 320 335 62 39 chr4 35373884 35374063 -148914599 + L2 LINE L2 2790 2972 -342 270 253 40 0 chr4 35374149 35374248 -148914414 + (TA)n Simple_repeat Simple_repeat 2 104 0 291 284 106 79 chr4 35375688 35375942 -148912720 - L2 LINE L2 -20 3293 3033 661 230 158 49 chr4 35376639 35376680 -148911982 - MLT2C2 LTR ERVL 0 464 429 680 10 41 0 chr4 35376680 35376777 -148911885 + (TCTA)n Simple_repeat Simple_repeat 2 102 0 661 230 158 49 chr4 35376777 35377039 -148911623 - MLT2C2 LTR ERVL -35 429 128 28 29 0 0 chr4 35377261 35377296 -148911366 + AT_rich Low_complexity Low_complexity 1 35 0 2545 124 3 3 chr4 35377413 35377777 -148910885 + THE1B LTR MaLR 1 364 0 31 0 0 0 chr4 35379548 35379579 -148909083 + AT_rich Low_complexity Low_complexity 1 31 0 310 274 72 67 chr4 35379964 35380187 -148908475 + L1MC4 LINE L1 7684 7907 -135 432 261 118 19 chr4 35382109 35382270 -148906392 - MER5B DNA MER1_type 0 178 2 787 226 100 30 chr4 35385149 35385419 -148903243 - MLT1C LTR MaLR -2 465 177 458 260 98 59 chr4 35385619 35385823 -148902839 - MLT1I LTR MaLR -197 212 1 234 0 0 0 chr4 35386561 35386587 -148902075 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2456 191 29 22 chr4 35386950 35387496 -148901166 - MER89 LTR ERV1 0 559 10 232 426 34 7 chr4 35387737 35387885 -148900777 + MIR SINE MIR 29 180 -82 5113 155 37 27 chr4 35388257 35388380 -148900282 - L1MA7 LINE L1 -4 6287 6167 354 23 0 0 chr4 35388380 35388423 -148900239 + (TG)n Simple_repeat Simple_repeat 2 44 0 5113 155 37 27 chr4 35388423 35389406 -148899256 - L1MA7 LINE L1 -124 6167 5171 369 313 9 27 chr4 35390163 35390275 -148898387 - L2 LINE L2 0 3272 3163 21 36 0 0 chr4 35391463 35391491 -148897171 + AT_rich Low_complexity Low_complexity 1 28 0 8918 184 13 28 chr4 35391511 35392063 -148896599 - L1MA6 LINE L1 -2 6289 5730 2163 132 41 16 chr4 35392063 35392427 -148896235 - THE1C LTR MaLR 0 375 3 9278 133 34 21 chr4 35392429 35393989 -148894673 - THE1C-int LTR MaLR 0 1580 1 2468 110 5 21 chr4 35393989 35394370 -148894292 - THE1C LTR MaLR 0 375 1 8918 184 13 28 chr4 35394370 35396647 -148892015 - L1MA6 LINE L1 -560 5731 3512 374 0 22 0 chr4 35396913 35396959 -148891703 + (CA)n Simple_repeat Simple_repeat 2 48 0 21 0 0 0 chr4 35398406 35398427 -148890235 + AT_rich Low_complexity Low_complexity 1 21 0 446 334 121 57 chr4 35398472 35399766 -148888896 + L2 LINE L2 1894 3266 -6 2317 124 63 0 chr4 35399840 35400219 -148888443 - MER57A LTR ERV1 0 403 1 1760 95 4 0 chr4 35400801 35401033 -148887629 + AluSg SINE Alu 1 233 -77 1306 201 103 34 chr4 35401078 35401515 -148887147 - MLT1C LTR MaLR 0 467 1 2031 288 122 55 chr4 35401734 35403219 -148885443 + L2 LINE L2 1721 3313 0 36 23 0 0 chr4 35404822 35404865 -148883797 + AT_rich Low_complexity Low_complexity 1 43 0 1638 165 76 9 chr4 35405729 35406045 -148882617 - MER1B DNA MER1_type 0 337 1 2573 101 3 6 chr4 35407018 35407374 -148881288 - THE1A LTR MaLR 0 355 1 11072 103 9 4 chr4 35407374 35408946 -148879716 - THE1A-int LTR MaLR 0 1580 1 2044 102 0 1 chr4 35408946 35409258 -148879404 - THE1A LTR MaLR 0 355 1 764 213 76 152 chr4 35409899 35410294 -148878368 + MLT1A1 LTR MaLR 1 365 0 502 335 76 56 chr4 35410509 35411308 -148877354 + L1M4 LINE L1 4520 5334 -812 24 53 0 0 chr4 35411370 35411408 -148877254 + AT_rich Low_complexity Low_complexity 1 38 0 27 29 0 0 chr4 35411435 35411469 -148877193 + AT_rich Low_complexity Low_complexity 1 34 0 213 397 77 0 chr4 35412243 35412321 -148876341 - MIR SINE MIR -96 112 29 1303 204 15 88 chr4 35412332 35412675 -148875987 - MLT1A1 LTR MaLR 0 365 48 184 143 0 32 chr4 35413732 35413795 -148874867 + (TATAA)n Simple_repeat Simple_repeat 4 64 0 254 265 97 105 chr4 35413803 35414041 -148874621 - MIR SINE MIR -14 248 13 279 0 0 0 chr4 35414105 35414136 -148874526 + (A)n Simple_repeat Simple_repeat 1 31 0 322 321 138 62 chr4 35414712 35415017 -148873645 - L1ME LINE L1 -5484 586 259 267 322 7 20 chr4 35415195 35415347 -148873315 - L1MEc LINE L1 -5025 1371 1222 1130 202 7 2 chr4 35415470 35415741 -148872921 + MER7A DNA MER2_type 3 333 -3 291 28 0 0 chr4 35415788 35415824 -148872838 + (TTG)n Simple_repeat Simple_repeat 1 36 0 261 271 0 21 chr4 35416228 35416324 -148872338 + (CATA)n Simple_repeat Simple_repeat 3 96 0 207 0 0 0 chr4 35417000 35417023 -148871639 + (A)n Simple_repeat Simple_repeat 1 23 0 679 325 65 47 chr4 35418256 35418597 -148870065 - L2 LINE L2 -1 3312 2966 1980 102 0 0 chr4 35419654 35419929 -148868733 + AluSc SINE Alu 3 277 -32 182 62 31 0 chr4 35419929 35419961 -148868701 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 29 60 0 0 chr4 35420138 35420188 -148868474 + AT_rich Low_complexity Low_complexity 1 50 0 590 304 72 5 chr4 35420918 35421125 -148867537 - MIR SINE MIR -13 249 29 28 0 0 0 chr4 35421134 35421162 -148867500 + AT_rich Low_complexity Low_complexity 1 28 0 212 333 85 35 chr4 35421948 35422089 -148866573 - MIR SINE MIR -112 150 3 418 284 52 32 chr4 35422304 35422459 -148866203 + L1MEc LINE L1 20 177 -6219 548 242 0 0 chr4 35422468 35422596 -148866066 - MLT1D LTR MaLR 0 505 378 311 281 74 15 chr4 35422672 35422807 -148865855 + L1MEc LINE L1 1948 2090 -4306 4768 104 20 6 chr4 35422853 35423567 -148865095 - L1PA13 LINE L1 0 6163 5440 265 143 20 0 chr4 35423567 35423616 -148865046 - L1PA13 LINE L1 -1935 4211 4162 1835 257 65 7 chr4 35423616 35424312 -148864350 + L1M4 LINE L1 4374 5109 -1037 313 133 0 0 chr4 35424607 35424652 -148864010 + MLT1I LTR MaLR 362 406 -3 326 234 45 63 chr4 35424720 35424831 -148863831 + L1ME3A LINE L1 6038 6146 -24 270 264 45 0 chr4 35424841 35424951 -148863711 + (TA)n Simple_repeat Simple_repeat 1 115 0 1307 144 66 16 chr4 35426167 35426410 -148862252 - MSTA LTR MaLR 0 428 174 2043 123 3 3 chr4 35426510 35426819 -148861843 + MSTA-int LTR MaLR 1338 1646 -5 1743 158 110 18 chr4 35426824 35427216 -148861446 + MSTA LTR MaLR 1 428 0 2181 114 0 0 chr4 35427309 35427615 -148861047 + AluSg SINE Alu 1 306 -4 406 335 71 0 chr4 35428052 35428222 -148860440 - MER5A DNA MER1_type 0 189 8 214 302 85 28 chr4 35428582 35428688 -148859974 + MIR SINE MIR 2 113 -149 2331 132 0 6 chr4 35429200 35429564 -148859098 + THE1B LTR MaLR 1 362 -2 272 277 85 0 chr4 35430549 35430643 -148858019 - MIR SINE MIR -112 150 49 200 217 22 0 chr4 35430641 35430687 -148857975 - L2 LINE L2 -3 3310 3264 * 24 32 0 0 chr4 35431410 35431441 -148857221 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr4 35432073 35432096 -148856566 + AT_rich Low_complexity Low_complexity 1 23 0 201 288 153 27 chr4 35432103 35432214 -148856448 - L2 LINE L2 0 3313 3189 688 176 21 21 chr4 35432277 35432419 -148856243 + MSTD LTR MaLR 253 394 -2 241 331 66 22 chr4 35432420 35432556 -148856106 - L2 LINE L2 -221 3051 2910 182 275 0 75 chr4 35432696 35432776 -148855886 + MIR SINE MIR 189 262 0 405 0 0 0 chr4 35433719 35433764 -148854898 + (TA)n Simple_repeat Simple_repeat 1 45 0 23 33 0 0 chr4 35433882 35433912 -148854750 + AT_rich Low_complexity Low_complexity 1 30 0 313 329 181 0 chr4 35433927 35434076 -148854586 - MIR SINE MIR -13 249 74 1681 195 3 0 chr4 35434493 35434790 -148853872 + AluJb SINE Alu 1 298 -14 234 0 0 0 chr4 35434790 35434816 -148853846 + (TA)n Simple_repeat Simple_repeat 2 27 0 670 234 43 22 chr4 35435089 35435273 -148853389 - MER5A DNA MER1_type -1 188 1 21 0 0 0 chr4 35436523 35436544 -148852118 + AT_rich Low_complexity Low_complexity 1 21 0 447 324 89 0 chr4 35438279 35438458 -148850204 + MLT1E LTR MaLR 6 200 -342 1021 275 47 55 chr4 35438522 35438926 -148849736 + MLT1E LTR MaLR 193 593 0 2117 123 46 0 chr4 35438932 35439256 -148849406 + L1P3 LINE L1 8 346 -6115 6780 66 11 0 chr4 35439386 35440931 -148847731 - L1PA7 LINE L1 -1 6153 4597 194 310 0 17 chr4 35443570 35443628 -148845034 - MER5A DNA MER1_type -13 176 120 183 300 191 18 chr4 35443580 35443690 -148844972 + MER5A DNA MER1_type 35 163 -26 * 183 184 0 0 chr4 35444853 35444891 -148843771 + (ATG)n Simple_repeat Simple_repeat 1 38 0 588 273 21 62 chr4 35445368 35445562 -148843100 + MIR SINE MIR 42 227 -35 249 324 0 0 chr4 35445972 35446040 -148842622 - L2 LINE L2 -4 3309 3242 2038 141 3 0 chr4 35446586 35446891 -148841771 + AluSx SINE Alu 1 306 -6 628 198 16 0 chr4 35447394 35447520 -148841142 - Charlie1a DNA MER1_type -5 1450 1323 2852 196 21 7 chr4 35447520 35448137 -148840525 + L1PB4 LINE L1 4681 5306 -840 2082 193 237 97 chr4 35448155 35449021 -148839641 + LTR28 LTR ERV1 30 1016 -4 382 205 0 0 chr4 35449024 35449107 -148839555 + L1PB4 LINE L1 5302 5384 -762 1927 156 59 8 chr4 35449151 35449509 -148839153 + L1PB4 LINE L1 5776 6151 -5 82 62 0 0 chr4 35449513 35449658 -148839004 + AT_rich Low_complexity Low_complexity 1 145 0 2108 115 10 0 chr4 35450727 35451023 -148837639 + AluSg SINE Alu 1 299 -11 1555 227 5 52 chr4 35451282 35451332 -148837330 - MLT1A1 LTR MaLR 0 365 314 1983 155 0 0 chr4 35451332 35451636 -148837026 - AluSx SINE Alu -7 305 2 1555 227 5 52 chr4 35451636 35451968 -148836694 - MLT1A1 LTR MaLR -51 314 1 4102 222 57 30 chr4 35451994 35452432 -148836230 - Charlie1a DNA MER1_type -1580 1181 756 2256 114 0 0 chr4 35452432 35452740 -148835922 + AluSq SINE Alu 3 310 -3 4102 222 57 30 chr4 35452740 35453450 -148835212 - Charlie1a DNA MER1_type -2005 756 3 1992 119 37 0 chr4 35453798 35454092 -148834570 + AluSx SINE Alu 1 305 -7 1237 300 58 39 chr4 35454528 35455147 -148833515 - L2 LINE L2 -5 3308 2684 335 336 60 0 chr4 35455427 35455543 -148833119 - MIR SINE MIR -6 256 134 220 353 47 24 chr4 35455952 35456037 -148832625 + MIR SINE MIR 17 103 -105 22 0 0 0 chr4 35456518 35456540 -148832122 + AT_rich Low_complexity Low_complexity 1 22 0 432 233 74 95 chr4 35456632 35456821 -148831841 - MIR SINE MIR -6 256 72 2220 228 30 4 chr4 35457867 35458331 -148830331 + MER70B LTR ERVL 1 476 -102 22 35 0 0 chr4 35458977 35459006 -148829656 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 35459057 35459078 -148829584 + AT_rich Low_complexity Low_complexity 1 21 0 2020 112 53 0 chr4 35460861 35461146 -148827516 - AluSp SINE Alu -13 300 1 271 315 39 47 chr4 35461246 35461373 -148827289 - L2 LINE L2 -18 3295 3170 313 146 0 0 chr4 35461643 35461691 -148826971 + MLT1C LTR MaLR 417 464 -3 238 364 186 0 chr4 35461940 35462080 -148826582 + L2 LINE L2 3107 3272 0 212 204 23 0 chr4 35462326 35462370 -148826292 + CT-rich Low_complexity Low_complexity 3 47 0 251 377 18 0 chr4 35462373 35462487 -148826175 - L2 LINE L2 -18 3254 3139 27 0 0 0 chr4 35462672 35462699 -148825963 + AT_rich Low_complexity Low_complexity 1 27 0 27 0 0 0 chr4 35462812 35462839 -148825823 + AT_rich Low_complexity Low_complexity 1 27 0 3001 81 0 0 chr4 35462854 35463292 -148825370 + L1PA4 LINE L1 5729 6166 0 2659 93 3 6 chr4 35463626 35463991 -148824671 + THE1B LTR MaLR 1 364 0 30 89 0 0 chr4 35464141 35464220 -148824442 + AT_rich Low_complexity Low_complexity 1 79 0 714 298 57 4 chr4 35464230 35464475 -148824187 - L1MA9 LINE L1 -37 6275 6018 1136 288 121 41 chr4 35464773 35465451 -148823211 + L2 LINE L2 1981 2712 -602 376 220 165 9 chr4 35465455 35465564 -148823098 - MIR SINE MIR -51 211 86 208 302 46 83 chr4 35465618 35465871 -148822791 + L2 LINE L2 2722 3031 -282 21 0 0 0 chr4 35467892 35467913 -148820749 + AT_rich Low_complexity Low_complexity 1 21 0 30 27 0 0 chr4 35468689 35468726 -148819936 + AT_rich Low_complexity Low_complexity 1 37 0 238 235 0 0 chr4 35468808 35468859 -148819803 - L2 LINE L2 0 3313 3263 631 316 44 5 chr4 35469014 35469220 -148819442 + MIR SINE MIR 49 262 0 281 349 80 17 chr4 35470057 35470232 -148818430 - MIR SINE MIR -2 260 75 626 267 39 17 chr4 35471791 35471971 -148816691 - MLT1C LTR MaLR -84 383 200 204 40 0 0 chr4 35471995 35472020 -148816642 + (TTG)n Simple_repeat Simple_repeat 3 27 0 2256 76 7 0 chr4 35472705 35472982 -148815680 - AluY SINE Alu -18 293 15 1301 153 27 0 chr4 35472990 35473212 -148815450 - L1MA4A LINE L1 -27 6276 6049 386 98 98 0 chr4 35473225 35473286 -148815376 - MLT1C LTR MaLR -292 175 109 2151 303 149 10 chr4 35473296 35474363 -148814299 - L2 LINE L2 -313 3000 1789 21 36 0 0 chr4 35475490 35475518 -148813144 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr4 35477395 35477419 -148811243 + AT_rich Low_complexity Low_complexity 1 24 0 267 263 25 25 chr4 35477582 35477700 -148810962 + L1ME4a LINE L1 5768 5885 -236 235 206 55 14 chr4 35477736 35477809 -148810853 + (TATATG)n Simple_repeat Simple_repeat 2 77 0 4679 116 17 54 chr4 35477872 35478176 -148810486 + MER4E LTR ERV1 1 315 -464 2241 111 0 13 chr4 35478176 35478491 -148810171 + AluSx SINE Alu 1 311 -1 4679 116 17 54 chr4 35478491 35478995 -148809667 + MER4E LTR ERV1 315 779 0 2330 145 81 34 chr4 35479150 35479618 -148809044 - LTR2B LTR ERV1 0 490 1 337 269 79 71 chr4 35479831 35480174 -148808488 - MLT1I LTR MaLR -2 407 70 240 351 58 32 chr4 35480480 35480634 -148808028 - MIR SINE MIR -56 206 49 313 224 22 37 chr4 35481173 35481307 -148807355 + L1ME4a LINE L1 5990 6121 0 234 262 16 16 chr4 35481981 35482042 -148806620 - MER58 DNA MER1_type -129 86 26 742 300 57 24 chr4 35482060 35482307 -148806355 - MIR SINE MIR -5 257 3 1597 255 50 2 chr4 35482386 35482790 -148805872 - MLT1E2 LTR MaLR -4 622 200 2291 165 34 77 chr4 35482800 35483278 -148805384 + LTR32 LTR ERVL 15 471 0 534 142 172 58 chr4 35483308 35483482 -148805180 - MLT1E3 LTR MaLR -442 184 5 290 289 195 13 chr4 35484147 35484296 -148804366 + L2 LINE L2 2916 3091 -181 1103 276 76 11 chr4 35484432 35484802 -148803860 - MLT1I LTR MaLR -8 401 8 474 202 0 0 chr4 35484833 35484922 -148803740 + MLT1A1 LTR MaLR 1 89 -285 600 236 6 45 chr4 35485141 35485298 -148803364 + MLT1B LTR MaLR 1 151 -239 1164 341 57 24 chr4 35485312 35486335 -148802327 - L1MEc LINE L1 -5306 1090 35 39 22 0 0 chr4 35486627 35486673 -148801989 + AT_rich Low_complexity Low_complexity 1 46 0 5476 171 43 13 chr4 35487175 35488362 -148800300 + L1MC1 LINE L1 5107 6333 0 300 115 0 66 chr4 35488353 35488414 -148800248 + L1MB2 LINE L1 6111 6167 -4 * 32 0 0 0 chr4 35488414 35488446 -148800216 + AT_rich Low_complexity Low_complexity 1 32 0 180 77 0 0 chr4 35488661 35488687 -148799975 + (T)n Simple_repeat Simple_repeat 1 26 0 195 217 0 0 chr4 35489141 35489201 -148799461 + (TG)n Simple_repeat Simple_repeat 2 61 0 1179 196 43 40 chr4 35490065 35490340 -148798322 + MLT1A1 LTR MaLR 56 331 -34 717 245 6 12 chr4 35490340 35490503 -148798159 + MER70A LTR ERVL 1 162 -310 * 2115 219 39 49 chr4 35490499 35490993 -148797669 + MER70B LTR ERVL 90 578 0 235 158 0 0 chr4 35490995 35491033 -148797629 + MLT1A1 LTR MaLR 336 373 -1 797 181 24 0 chr4 35491034 35491161 -148797501 - MER20 DNA MER1_type -88 131 2 1125 286 28 55 chr4 35491542 35491654 -148797008 - LTR16C LTR ERVL -4 487 373 2089 135 48 25 chr4 35491654 35492010 -148796652 + THE1B LTR MaLR 1 364 0 10332 176 1 0 chr4 35492010 35493588 -148795074 + THE1B-int LTR MaLR 1 1580 0 2029 136 57 28 chr4 35493588 35493942 -148794720 + THE1B LTR MaLR 1 364 0 1125 286 28 55 chr4 35493942 35494226 -148794436 - LTR16C LTR ERVL -115 376 100 439 260 182 17 chr4 35494593 35494774 -148793888 - MIR SINE MIR -50 212 2 25 0 0 0 chr4 35495055 35495080 -148793582 + AT_rich Low_complexity Low_complexity 1 25 0 307 349 98 23 chr4 35496063 35496278 -148792384 - MIR SINE MIR -4 258 28 623 186 47 16 chr4 35496841 35496970 -148791692 + FLAM_C SINE Alu 1 133 0 4467 105 76 26 chr4 35497009 35498023 -148790639 - MER11A LTR ERVK -1 1265 1 1992 172 90 10 chr4 35498023 35498413 -148790249 + MSTA LTR MaLR 8 428 0 233 121 0 0 chr4 35498413 35498446 -148790216 + Alu SINE Alu 29 61 -114 493 193 174 0 chr4 35498450 35498559 -148790103 + AluJb SINE Alu 176 303 -9 2179 114 7 0 chr4 35498804 35499102 -148789560 + AluSx SINE Alu 1 300 -12 2793 165 72 42 chr4 35499216 35499810 -148788852 - LTR9 LTR ERV1 0 612 1 311 332 79 55 chr4 35499972 35500427 -148788235 + LTR67 LTR ERVL 91 556 -1 399 305 10 90 chr4 35500558 35500758 -148787904 - MIR3 SINE MIR -6 202 19 224 312 127 40 chr4 35501233 35501406 -148787256 + MIR SINE MIR 65 252 -10 199 371 98 21 chr4 35502148 35502291 -148786371 - L3b LINE CR1 -93 1490 1337 766 218 59 0 chr4 35502597 35502767 -148785895 - MER3 DNA MER1_type 0 209 30 3617 228 36 70 chr4 35503905 35504383 -148784279 - L1MB8 LINE L1 -51 6127 5634 2029 96 29 0 chr4 35504383 35504676 -148783986 - AluSg SINE Alu 0 301 1 3617 228 36 70 chr4 35504676 35505141 -148783521 - L1MB8 LINE L1 -544 5634 5155 1729 155 49 3 chr4 35505141 35505425 -148783237 + AluJo SINE Alu 16 312 0 3617 228 36 70 chr4 35505425 35506296 -148782366 - L1MB8 LINE L1 -1023 5155 4441 1882 125 24 10 chr4 35506296 35506591 -148782071 - AluSx SINE Alu -13 299 1 3617 228 36 70 chr4 35506591 35507148 -148781514 - L1MB8 LINE L1 -1737 4441 3867 186 43 0 0 chr4 35507249 35507272 -148781390 + (TCC)n Simple_repeat Simple_repeat 1 23 0 2702 257 98 7 chr4 35507272 35508403 -148780259 - L1MB8 LINE L1 -2529 3617 2384 182 254 0 18 chr4 35508495 35508550 -148780112 - MIR SINE MIR -150 112 59 2114 108 9 19 chr4 35508578 35508894 -148779768 + AluSq SINE Alu 1 313 0 2244 115 0 10 chr4 35509881 35510193 -148778469 + AluSq SINE Alu 1 309 -4 360 295 217 28 chr4 35510195 35510554 -148778108 + L1MC4a LINE L1 5574 6000 -1808 617 126 34 17 chr4 35511266 35511385 -148777277 + FLAM_C SINE Alu 23 143 0 887 214 50 11 chr4 35511587 35511769 -148776893 - MSTA LTR MaLR -9 419 231 288 310 18 35 chr4 35512138 35512274 -148776388 + FLAM_C SINE Alu 23 156 0 2473 155 29 7 chr4 35512450 35512869 -148775793 - MSTA LTR MaLR 0 428 1 368 288 146 26 chr4 35514042 35514275 -148774387 - MIR SINE MIR -1 261 1 1303 248 52 83 chr4 35514315 35514421 -148774241 - MLT1F1 LTR MaLR 0 567 459 1971 155 47 6 chr4 35514421 35514743 -148773919 - MER1B DNA MER1_type -2 335 1 1303 248 52 83 chr4 35514743 35515152 -148773510 - MLT1F1 LTR MaLR -108 459 68 199 292 12 119 chr4 35515565 35515733 -148772929 - MIR SINE MIR -7 255 106 636 256 14 70 chr4 35516608 35516823 -148771839 + MLT2B1 LTR ERVL 276 478 -42 253 159 14 14 chr4 35516831 35516900 -148771762 + (TA)n Simple_repeat Simple_repeat 1 69 0 247 104 0 51 chr4 35516904 35516970 -148771692 + MLT2C2 LTR ERVL 431 464 0 507 296 13 7 chr4 35516977 35517129 -148771533 - MLT1I LTR MaLR -206 203 51 234 282 13 26 chr4 35517371 35517449 -148771213 + MIR SINE MIR 183 259 -3 223 177 16 32 chr4 35517458 35517520 -148771142 + (TTA)n Simple_repeat Simple_repeat 1 61 0 436 239 54 83 chr4 35518092 35518297 -148770365 + MIR SINE MIR 48 246 -16 1422 267 85 30 chr4 35518368 35518862 -148769800 - MLT1H1 LTR MaLR 0 555 35 711 219 77 5 chr4 35519290 35519486 -148769176 - MER58C DNA MER1_type -5 210 1 493 224 61 139 chr4 35520227 35520467 -148768195 - MER69 DNA AcHobo -1399 1127 913 1781 152 82 114 chr4 35520467 35520907 -148767755 + MSTB LTR MaLR 1 426 0 493 224 61 139 chr4 35520907 35520961 -148767701 - MER69 DNA AcHobo -1613 913 856 8762 173 28 32 chr4 35520961 35523395 -148765267 - L1M1 LINE L1 -548 5755 3308 5464 206 19 68 chr4 35523404 35523935 -148764727 - L1M2 LINE L1 -3929 3279 2723 1934 163 0 7 chr4 35523935 35524230 -148764432 + AluSx SINE Alu 3 295 -17 5464 206 19 68 chr4 35524230 35525417 -148763245 - L1M2 LINE L1 -4485 2723 1652 2358 249 66 30 chr4 35525401 35526163 -148762499 - L1M2 LINE L1 -6322 887 29 * 312 260 81 52 chr4 35526187 35526358 -148762304 - MER69 DNA AcHobo -1737 789 614 279 266 116 22 chr4 35526358 35526613 -148762049 - MER34 LTR ERV1 0 726 354 310 221 48 39 chr4 35526780 35526884 -148761778 - MER34 LTR ERV1 -412 130 26 1626 262 69 19 chr4 35526912 35527477 -148761185 - MER69 DNA AcHobo -1927 599 7 32 0 0 0 chr4 35527677 35527709 -148760953 + AT_rich Low_complexity Low_complexity 1 32 0 1903 125 38 14 chr4 35527711 35527998 -148760664 + AluSc SINE Alu 1 294 -15 311 192 61 40 chr4 35528892 35528991 -148759671 - MLT1I LTR MaLR -305 104 4 342 0 0 0 chr4 35531184 35531222 -148757440 + (CAG)n Simple_repeat Simple_repeat 2 39 0 279 206 38 8 chr4 35534297 35534428 -148754234 + GA-rich Low_complexity Low_complexity 1 135 0 331 259 0 35 chr4 35536056 35536226 -148752436 + (CGG)n Simple_repeat Simple_repeat 1 164 0 22 0 0 0 chr4 35541025 35541047 -148747615 + AT_rich Low_complexity Low_complexity 1 22 0 243 88 0 0 chr4 35542340 35542374 -148746288 + (TA)n Simple_repeat Simple_repeat 1 34 0 234 0 0 0 chr4 35542373 35542399 -148746263 + (GA)n Simple_repeat Simple_repeat 2 27 0 * 346 335 12 12 chr4 35543147 35543280 -148745382 - MIR SINE MIR -56 152 19 29 47 0 0 chr4 35544000 35544043 -148744619 + AT_rich Low_complexity Low_complexity 1 43 0 28 61 0 0 chr4 35544175 35544224 -148744438 + AT_rich Low_complexity Low_complexity 1 49 0 222 156 0 0 chr4 35545394 35545439 -148743223 + (TG)n Simple_repeat Simple_repeat 2 46 0 24 0 0 0 chr4 35545506 35545530 -148743132 + AT_rich Low_complexity Low_complexity 1 24 0 21 82 0 0 chr4 35545580 35545629 -148743033 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr4 35546107 35546128 -148742534 + AT_rich Low_complexity Low_complexity 1 21 0 609 236 65 41 chr4 35546565 35546811 -148741851 - MER112 DNA MER1_type -1 255 4 628 205 8 8 chr4 35547533 35547660 -148741002 - FLAM_A SINE Alu -8 134 8 2073 141 0 3 chr4 35548304 35548610 -148740052 - AluSx SINE Alu -7 305 1 395 216 10 49 chr4 35548746 35548848 -148739814 + L2 LINE L2 3174 3271 -1 26 0 0 0 chr4 35550576 35550602 -148738060 + AT_rich Low_complexity Low_complexity 1 26 0 2333 74 0 3 chr4 35550602 35550912 -148737750 - AluY SINE Alu -2 309 1 325 229 29 48 chr4 35551151 35551256 -148737406 + MIR SINE MIR 35 137 -71 22 0 0 0 chr4 35551425 35551447 -148737215 + AT_rich Low_complexity Low_complexity 1 22 0 795 201 20 0 chr4 35551448 35551597 -148737065 + FRAM SINE Alu 1 152 -14 186 43 0 0 chr4 35551613 35551636 -148737026 + (TG)n Simple_repeat Simple_repeat 2 24 0 1080 237 15 57 chr4 35551931 35552264 -148736398 - MLT1B LTR MaLR -6 384 66 21 0 0 0 chr4 35553133 35553154 -148735508 + AT_rich Low_complexity Low_complexity 1 21 0 306 65 48 0 chr4 35553188 35553250 -148735412 + (TA)n Simple_repeat Simple_repeat 1 65 0 226 303 15 0 chr4 35553742 35553808 -148734854 + (TATG)n Simple_repeat Simple_repeat 1 67 0 320 326 11 11 chr4 35553872 35553967 -148734695 - L2 LINE L2 -30 3283 3189 629 338 18 9 chr4 35554034 35554262 -148734400 - MIR SINE MIR -28 234 5 906 207 47 61 chr4 35555357 35555570 -148733092 - AluJb SINE Alu -102 210 1 201 74 0 0 chr4 35557797 35557824 -148730838 + (CA)n Simple_repeat Simple_repeat 1 27 0 274 294 25 84 chr4 35558591 35558710 -148729952 - L2 LINE L2 -107 3165 3054 508 289 55 68 chr4 35558930 35559328 -148729334 + MARNA DNA Mariner 185 577 -9 228 67 0 0 chr4 35559845 35559875 -148728787 + (TG)n Simple_repeat Simple_repeat 1 30 0 2092 104 39 0 chr4 35559926 35560205 -148728457 - AluSx SINE Alu -22 290 1 1790 212 46 38 chr4 35561391 35561890 -148726772 - MLT1D LTR MaLR -2 503 1 1354 235 57 29 chr4 35562388 35562771 -148725891 - MSTD LTR MaLR -2 394 1 456 230 0 0 chr4 35564102 35564202 -148724460 + MER20 DNA MER1_type 103 202 -17 341 233 26 60 chr4 35564388 35564504 -148724158 - LTR33 LTR ERVL -377 144 33 293 364 73 26 chr4 35564763 35564914 -148723748 - L2 LINE L2 0 3272 3115 1632 86 4 26 chr4 35566195 35566429 -148722233 - AluSg/x SINE Alu -1 309 81 318 106 0 0 chr4 35566863 35566910 -148721752 + (A)n Simple_repeat Simple_repeat 1 47 0 288 0 0 0 chr4 35568239 35568271 -148720391 + (TG)n Simple_repeat Simple_repeat 2 33 0 391 310 80 42 chr4 35568981 35569194 -148719468 - MIR SINE MIR -11 251 31 593 305 17 51 chr4 35569619 35569715 -148718947 - MIR SINE MIR -33 229 131 1747 185 44 95 chr4 35569715 35569879 -148718783 - MSTB2 LTR MaLR 0 457 286 2172 102 0 0 chr4 35569879 35570163 -148718499 + AluSc SINE Alu 1 284 -25 1747 185 44 95 chr4 35570163 35570480 -148718182 - MSTB2 LTR MaLR -171 286 1 593 305 17 51 chr4 35570480 35570619 -148718043 - MIR SINE MIR -131 131 2 765 315 79 50 chr4 35571406 35571938 -148716724 + L2 LINE L2 2718 3271 -1 695 282 92 71 chr4 35571961 35572426 -148716236 - L2 LINE L2 -11 3302 2828 2255 106 0 0 chr4 35573023 35573325 -148715337 - AluSx SINE Alu -10 302 1 2287 123 3 3 chr4 35574418 35574777 -148713885 + L1P LINE L1 4130 4488 -1658 1096 203 38 25 chr4 35575421 35575736 -148712926 - MER33 DNA MER1_type -1 323 5 228 302 80 62 chr4 35575831 35576056 -148712606 - MIR SINE MIR -26 236 8 21 0 0 0 chr4 35576132 35576153 -148712509 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 35576369 35576390 -148712272 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 35577018 35577040 -148711622 + AT_rich Low_complexity Low_complexity 1 22 0 1963 81 81 0 chr4 35577045 35577318 -148711344 + AluSq SINE Alu 1 295 -18 1525 124 39 8 chr4 35577554 35577788 -148710874 + AluSg SINE Alu 50 290 -20 252 0 0 0 chr4 35578740 35578768 -148709894 + (TG)n Simple_repeat Simple_repeat 2 29 0 389 309 42 24 chr4 35578948 35579113 -148709549 + MIR SINE MIR 2 169 -93 246 342 117 0 chr4 35580732 35580843 -148707819 + MIR SINE MIR 21 144 -64 2109 109 0 34 chr4 35580886 35581208 -148707454 - AluSx SINE Alu -1 311 1 346 121 17 0 chr4 35582107 35582165 -148706497 + AluS SINE Alu 1 59 -249 261 0 0 0 chr4 35583520 35583549 -148705113 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1996 123 0 0 chr4 35583550 35583827 -148704835 - AluSc SINE Alu -32 277 1 225 0 0 0 chr4 35583934 35583959 -148704703 + (T)n Simple_repeat Simple_repeat 1 25 0 588 189 27 0 chr4 35585067 35585178 -148703484 + FLAM_A SINE Alu 10 123 -19 2156 121 3 0 chr4 35590690 35590996 -148697666 - AluSx SINE Alu -5 307 1 219 231 0 19 chr4 35591210 35591262 -148697400 + CT-rich Low_complexity Low_complexity 2 52 0 1791 178 3 7 chr4 35591736 35592029 -148696633 - AluSx SINE Alu -20 292 1 269 324 162 0 chr4 35593075 35593186 -148695476 - MIR SINE MIR -59 149 21 390 275 33 17 chr4 35593323 35593443 -148695219 - L2 LINE L2 -1 3312 3191 276 319 33 11 chr4 35593481 35593572 -148695090 - L2 LINE L2 -15 3298 3206 1374 146 0 0 chr4 35594174 35594379 -148694283 + AluSg/x SINE Alu 108 312 0 1640 82 0 0 chr4 35595076 35595282 -148693380 - AluY SINE Alu -105 206 1 2341 87 3 0 chr4 35595380 35595678 -148692984 - AluSp SINE Alu -14 299 1 406 298 55 9 chr4 35596171 35596331 -148692331 + MIR SINE MIR 43 205 -57 1376 225 53 50 chr4 35596346 35596840 -148691822 - MER39 LTR ERV1 0 707 1 231 88 0 0 chr4 35597776 35597810 -148690852 + (TG)n Simple_repeat Simple_repeat 1 34 0 462 306 19 38 chr4 35604084 35604244 -148684418 - MIR SINE MIR -58 204 48 1777 169 6 13 chr4 35604482 35604796 -148683866 + AluJb SINE Alu 1 312 0 537 308 76 32 chr4 35605061 35605311 -148683351 + MIR SINE MIR 2 262 0 22 35 0 0 chr4 35608561 35608590 -148680072 + AT_rich Low_complexity Low_complexity 1 29 0 28 48 0 0 chr4 35608869 35608911 -148679751 + AT_rich Low_complexity Low_complexity 1 42 0 193 214 36 18 chr4 35608944 35609000 -148679662 + MIR SINE MIR 81 137 -125 694 175 0 8 chr4 35609004 35609124 -148679538 - FLAM_A SINE Alu -14 119 1 1874 119 90 0 chr4 35610802 35611080 -148677582 - AluSx SINE Alu -9 303 1 2288 66 0 7 chr4 35611089 35611418 -148677244 - AluY SINE Alu 0 327 1 24 0 0 0 chr4 35612469 35612493 -148676169 + AT_rich Low_complexity Low_complexity 1 24 0 180 290 46 92 chr4 35612799 35612930 -148675732 - L3 LINE CR1 -1348 229 105 2092 117 0 20 chr4 35613702 35614001 -148674661 - AluSg SINE Alu -16 294 2 257 300 9 9 chr4 35614136 35614246 -148674416 + (TA)n Simple_repeat Simple_repeat 2 111 0 236 419 22 13 chr4 35614456 35614685 -148673977 - L2 LINE L2 -222 3050 2820 205 195 0 0 chr4 35615350 35615391 -148673271 + (TAA)n Simple_repeat Simple_repeat 3 43 0 259 320 0 13 chr4 35615948 35616026 -148672636 - MIR SINE MIR -115 147 71 367 373 104 19 chr4 35616164 35616922 -148671740 - L2 LINE L2 -1504 1810 988 1569 199 7 10 chr4 35617283 35617574 -148671088 - AluJo SINE Alu -16 296 7 744 219 25 6 chr4 35617817 35617977 -148670685 - MLT1A1 LTR MaLR -202 163 1 2002 133 10 3 chr4 35618100 35618393 -148670269 + AluSc SINE Alu 1 295 -14 936 193 32 5 chr4 35618435 35618622 -148670040 + MLT1A1 LTR MaLR 174 365 0 593 280 129 32 chr4 35618636 35619040 -148669622 + L2 LINE L2 1702 2144 -1170 716 220 70 78 chr4 35619133 35619381 -148669281 + MIR SINE MIR 29 260 -2 671 318 99 52 chr4 35619384 35619742 -148668920 + L2 LINE L2 2327 2667 -646 1365 132 78 0 chr4 35619742 35619961 -148668701 - MER46A DNA MER2_type 0 236 1 671 318 99 52 chr4 35619961 35620151 -148668511 + L2 LINE L2 2667 2847 -466 2118 102 14 10 chr4 35620151 35620445 -148668217 - AluSg SINE Alu -15 295 1 671 318 99 52 chr4 35620445 35620614 -148668048 + L2 LINE L2 2847 3089 -224 191 323 48 0 chr4 35623235 35623297 -148665365 + MIR SINE MIR 87 151 -57 23 54 0 0 chr4 35624329 35624366 -148664296 + AT_rich Low_complexity Low_complexity 1 37 0 2124 117 7 0 chr4 35624452 35624750 -148663912 - AluSx SINE Alu -12 300 1 987 197 98 8 chr4 35625357 35625591 -148663071 - ORSL DNA AcHobo -20 255 1 212 329 73 36 chr4 35625601 35625738 -148662924 - L2 LINE L2 -214 3058 2917 240 404 93 11 chr4 35627209 35627392 -148661270 - L2 LINE L2 -41 3231 3034 2051 122 7 0 chr4 35627431 35627718 -148660944 - AluSq SINE Alu -20 293 5 270 322 29 0 chr4 35627879 35628053 -148660609 + (TA)n Simple_repeat Simple_repeat 1 179 0 3924 157 15 40 chr4 35628998 35629725 -148658937 - MER50 LTR ERV1 -23 711 3 186 43 0 0 chr4 35630559 35630582 -148658080 + (TAA)n Simple_repeat Simple_repeat 2 24 0 210 315 167 10 chr4 35630915 35631067 -148657595 + MIR SINE MIR 16 191 -71 849 283 121 35 chr4 35631529 35632125 -148656537 + L2 LINE L2 2590 3229 -84 476 291 126 27 chr4 35634800 35635023 -148653639 - MIR SINE MIR -9 253 9 29 0 0 0 chr4 35636387 35636416 -148652246 + AT_rich Low_complexity Low_complexity 1 29 0 184 234 64 106 chr4 35637419 35637513 -148651149 - L2 LINE L2 -2441 873 784 747 0 0 0 chr4 35637862 35637945 -148650717 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 238 281 31 0 chr4 35639759 35639823 -148648839 + CT-rich Low_complexity Low_complexity 1 66 0 1295 172 0 9 chr4 35640505 35640726 -148647936 - AluJb SINE Alu -9 303 85 440 276 116 55 chr4 35640986 35641185 -148647477 - MIR SINE MIR -21 241 31 539 299 12 24 chr4 35641681 35641848 -148646814 + MIR SINE MIR 13 177 -85 193 196 109 0 chr4 35645547 35645593 -148643069 + MIR SINE MIR 128 178 -84 192 167 0 0 chr4 35646092 35646140 -148642522 + CT-rich Low_complexity Low_complexity 4 51 0 321 315 54 8 chr4 35646471 35646601 -148642061 - L2 LINE L2 0 3272 3137 1628 211 74 76 chr4 35646939 35647437 -148641225 - MLT1D LTR MaLR 0 505 9 638 242 37 48 chr4 35647894 35647951 -148640711 - MIR SINE MIR -28 234 178 828 244 11 0 chr4 35647951 35648127 -148640535 + MER45A DNA AcHobo 1 178 0 638 242 37 48 chr4 35648127 35648290 -148640372 - MIR SINE MIR -84 178 14 260 250 29 15 chr4 35648317 35648385 -148640277 + L2 LINE L2 3200 3268 -4 276 149 0 0 chr4 35648685 35648732 -148639930 + (TA)n Simple_repeat Simple_repeat 1 47 0 1897 153 6 35 chr4 35648990 35649337 -148639325 + MER1B DNA MER1_type 1 337 0 343 303 113 43 chr4 35649403 35649588 -148639074 + MIR SINE MIR 9 206 -56 253 304 75 99 chr4 35649950 35650151 -148638511 - L2 LINE L2 -1 3271 3076 33 43 0 0 chr4 35651611 35651658 -148637004 + AT_rich Low_complexity Low_complexity 1 47 0 184 77 51 0 chr4 35651658 35651697 -148636965 + (TA)n Simple_repeat Simple_repeat 1 41 0 207 114 0 0 chr4 35652704 35652739 -148635923 + (TTCC)n Simple_repeat Simple_repeat 3 37 0 21 0 0 0 chr4 35652852 35652873 -148635789 + AT_rich Low_complexity Low_complexity 1 21 0 191 348 29 0 chr4 35653081 35653150 -148635512 + MIR SINE MIR 86 156 -106 225 0 0 0 chr4 35653809 35653834 -148634828 + (TG)n Simple_repeat Simple_repeat 1 25 0 22 35 0 0 chr4 35654282 35654311 -148634351 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 35655733 35655754 -148632908 + AT_rich Low_complexity Low_complexity 1 21 0 228 319 97 40 chr4 35656416 35656642 -148632020 - L2 LINE L2 -465 2849 2611 * 311 328 106 10 chr4 35656640 35656838 -148631824 + L2 LINE L2 3097 3313 0 23 0 0 0 chr4 35656841 35656864 -148631798 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr4 35656976 35656999 -148631663 + AT_rich Low_complexity Low_complexity 1 23 0 1720 154 29 0 chr4 35657000 35657273 -148631389 - AluSx SINE Alu -31 281 1 198 128 0 0 chr4 35657695 35657734 -148630928 + (A)n Simple_repeat Simple_repeat 1 39 0 1479 206 24 10 chr4 35659376 35659672 -148628990 - AluJo SINE Alu -12 300 1 900 238 51 28 chr4 35659914 35659963 -148628699 - MER20 DNA MER1_type 0 219 173 1749 176 88 29 chr4 35659963 35660337 -148628325 + MSTD LTR MaLR 1 396 0 900 238 51 28 chr4 35660337 35660501 -148628161 - MER20 DNA MER1_type -46 173 1 1698 186 4 0 chr4 35660622 35660901 -148627761 + AluJo SINE Alu 1 280 -32 180 77 0 0 chr4 35660901 35660927 -148627735 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 22 0 0 0 chr4 35662043 35662065 -148626597 + AT_rich Low_complexity Low_complexity 1 22 0 193 313 30 15 chr4 35663414 35663481 -148625181 + MIR SINE MIR 75 142 -66 320 317 30 10 chr4 35664225 35664326 -148624336 - MIR3 SINE MIR -12 196 94 228 35 0 0 chr4 35664977 35665006 -148623656 + (TG)n Simple_repeat Simple_repeat 2 30 0 268 208 0 0 chr4 35665390 35665438 -148623224 + MIR SINE MIR 91 138 -124 207 0 0 0 chr4 35666662 35666685 -148621977 + (A)n Simple_repeat Simple_repeat 1 23 0 341 275 31 25 chr4 35666761 35666921 -148621741 + MER117 DNA MER1_type 1 161 -36 213 39 0 0 chr4 35667662 35667688 -148620974 + (A)n Simple_repeat Simple_repeat 1 26 0 401 270 63 21 chr4 35667760 35667949 -148620713 + MER117 DNA MER1_type 1 197 0 259 280 86 26 chr4 35667969 35668103 -148620559 + MIR SINE MIR 3 143 -65 27 0 0 0 chr4 35668389 35668416 -148620246 + AT_rich Low_complexity Low_complexity 1 27 0 713 161 50 68 chr4 35669033 35669194 -148619468 - MER20 DNA MER1_type -7 212 55 28 0 0 0 chr4 35671525 35671553 -148617109 + AT_rich Low_complexity Low_complexity 1 28 0 208 279 0 0 chr4 35672418 35672461 -148616201 - MIR3 SINE MIR -52 156 114 2258 116 0 0 chr4 35674260 35674570 -148614092 - AluSx SINE Alu -2 310 1 432 279 116 43 chr4 35674858 35675089 -148613573 - MIR SINE MIR 0 262 13 201 253 69 35 chr4 35676343 35676430 -148612232 + MIR3 SINE MIR 119 208 0 301 287 10 40 chr4 35676844 35676945 -148611717 - MIR3 SINE MIR -23 185 88 942 207 74 0 chr4 35678221 35678424 -148610238 + MER20 DNA MER1_type 2 219 0 333 0 0 0 chr4 35679349 35679386 -148609276 + (CA)n Simple_repeat Simple_repeat 2 38 0 529 317 127 53 chr4 35679699 35680421 -148608241 + L3 LINE CR1 753 1528 -49 1015 269 145 31 chr4 35730951 35731435 -148557227 + MLT1H LTR MaLR 3 541 -8 360 0 0 0 chr4 35731842 35731882 -148556780 + (T)n Simple_repeat Simple_repeat 1 40 0 21 0 0 0 chr4 35732007 35732028 -148556634 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr4 35732117 35732140 -148556522 + AT_rich Low_complexity Low_complexity 1 23 0 192 298 48 0 chr4 35733837 35733921 -148554741 + MIR SINE MIR 125 212 -50 360 0 0 0 chr4 35734390 35734430 -148554232 + (A)n Simple_repeat Simple_repeat 1 40 0 26 0 0 0 chr4 35734560 35734586 -148554076 + AT_rich Low_complexity Low_complexity 1 26 0 214 365 24 35 chr4 35735576 35735746 -148552916 - MER5A DNA MER1_type -5 184 17 * 320 299 39 32 chr4 35735594 35735748 -148552914 + MER5A DNA MER1_type 35 189 0 218 246 88 0 chr4 35735887 35735944 -148552718 + MIR SINE MIR 85 146 -62 578 118 0 0 chr4 35736687 35736772 -148551890 + L1MC1 LINE L1 6236 6320 -13 186 43 0 0 chr4 35737500 35737523 -148551139 + (TG)n Simple_repeat Simple_repeat 2 24 0 27 0 0 0 chr4 35738289 35738316 -148550346 + AT_rich Low_complexity Low_complexity 1 27 0 195 386 28 28 chr4 35741452 35741628 -148547034 - L2 LINE L2 -198 3074 2899 448 316 93 25 chr4 35742246 35742561 -148546101 + L2 LINE L2 2692 3032 -281 1949 119 26 17 chr4 35742964 35743266 -148545396 + AluSx SINE Alu 1 305 -7 239 226 12 48 chr4 35745213 35745297 -148543365 + L1 LINE L1 3836 3916 -2230 2428 84 7 0 chr4 35745587 35745897 -148542765 + AluSp SINE Alu 1 312 -1 871 214 6 0 chr4 35746754 35746913 -148541749 - FRAM SINE Alu -24 152 1 631 149 14 78 chr4 35746936 35747077 -148541585 - FLAM_C SINE Alu 0 143 12 225 0 0 0 chr4 35747098 35747123 -148541539 + (T)n Simple_repeat Simple_repeat 1 25 0 549 268 72 66 chr4 35747124 35747759 -148540903 + L1ME3 LINE L1 4595 5233 -913 495 0 0 0 chr4 35747768 35747823 -148540839 + (TA)n Simple_repeat Simple_repeat 1 55 0 706 302 87 54 chr4 35747862 35748322 -148540340 + L1ME3 LINE L1 5355 5829 -333 2063 122 42 33 chr4 35749211 35749572 -148539090 + THE1B LTR MaLR 1 364 0 2119 102 0 52 chr4 35750220 35750544 -148538118 - AluSg SINE Alu -3 307 1 1852 141 15 41 chr4 35751061 35751278 -148537384 + L1PB3 LINE L1 5820 6026 -128 2452 63 0 22 chr4 35751278 35751596 -148537066 + AluY SINE Alu 1 311 0 1852 141 15 41 chr4 35751596 35751719 -148536943 + L1PB3 LINE L1 6026 6151 -3 1037 165 43 57 chr4 35752899 35753129 -148535533 - MSTB LTR MaLR 0 426 200 216 191 24 0 chr4 35753130 35753172 -148535490 + GA-rich Low_complexity Low_complexity 3 45 0 894 78 0 0 chr4 35753274 35753389 -148535273 - THE1-int LTR MaLR -80 1500 1386 1357 130 43 26 chr4 35753392 35753557 -148535105 - MSTB LTR MaLR -191 235 63 5221 72 12 1 chr4 35753557 35754241 -148534421 - LTR8 LTR ERV1 0 691 1 1357 130 43 26 chr4 35754241 35754306 -148534356 - MSTB LTR MaLR -363 63 1 229 200 20 20 chr4 35754439 35754489 -148534173 + CT-rich Low_complexity Low_complexity 2 51 0 583 297 77 5 chr4 35756521 35756730 -148531932 - MIR SINE MIR -38 224 1 22 35 0 0 chr4 35758019 35758048 -148530614 + AT_rich Low_complexity Low_complexity 1 29 0 1641 104 16 0 chr4 35758883 35759134 -148529528 - L1MA2 LINE L1 0 6304 6050 25 75 0 0 chr4 35759988 35760041 -148528621 + AT_rich Low_complexity Low_complexity 1 53 0 243 245 0 0 chr4 35761056 35761109 -148527553 - L3 LINE CR1 -2 1575 1523 23 92 0 0 chr4 35764152 35764217 -148524445 + AT_rich Low_complexity Low_complexity 1 65 0 210 238 16 0 chr4 35765515 35765578 -148523084 + (TG)n Simple_repeat Simple_repeat 1 64 0 2063 105 11 0 chr4 35765784 35766152 -148522510 + AluSx SINE Alu 3 373 0 492 18 0 0 chr4 35766189 35766246 -148522416 + (TA)n Simple_repeat Simple_repeat 2 58 0 242 315 56 0 chr4 35767144 35767233 -148521429 + MIR SINE MIR 15 108 -154 1697 193 80 3 chr4 35767373 35767735 -148520927 - MLT1B LTR MaLR 0 390 1 378 295 118 8 chr4 35768179 35768384 -148520278 - MIR SINE MIR -14 248 14 279 173 0 0 chr4 35768582 35768634 -148520028 + GA-rich Low_complexity Low_complexity 3 54 0 201 357 147 35 chr4 35769162 35769305 -148519357 - MIR3 SINE MIR -15 193 35 631 116 4 2 chr4 35771048 35771297 -148517365 + AluSq SINE Alu 1 299 -14 180 0 0 0 chr4 35771879 35771899 -148516763 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1846 128 20 10 chr4 35771936 35772234 -148516428 - AluSx SINE Alu -1 311 11 239 354 107 41 chr4 35772476 35772889 -148515773 + L2 LINE L2 2828 3267 -5 398 319 63 31 chr4 35774560 35774751 -148513911 - MIR SINE MIR -36 226 30 2323 94 0 0 chr4 35775124 35775421 -148513241 + AluY SINE Alu 1 297 -14 1782 124 0 8 chr4 35775795 35776061 -148512601 - AluSx SINE Alu -9 303 40 345 300 247 0 chr4 35776350 35776540 -148512122 + MIR SINE MIR 25 261 -1 23 0 0 0 chr4 35776923 35776946 -148511716 + AT_rich Low_complexity Low_complexity 1 23 0 2066 124 3 3 chr4 35778318 35778624 -148510038 - AluSx SINE Alu -6 306 1 408 55 0 0 chr4 35779104 35779159 -148509503 + (CA)n Simple_repeat Simple_repeat 1 55 0 292 234 0 26 chr4 35779162 35779239 -148509423 + GA-rich Low_complexity Low_complexity 3 77 0 23 0 0 0 chr4 35779814 35779837 -148508825 + AT_rich Low_complexity Low_complexity 1 23 0 1742 77 18 154 chr4 35781335 35781672 -148506990 - AluSp SINE Alu -12 291 1 188 255 64 0 chr4 35782577 35782624 -148506038 + L2 LINE L2 3219 3268 -4 180 152 0 0 chr4 35783028 35783061 -148505601 + A-rich Low_complexity Low_complexity 1 33 0 3859 159 18 26 chr4 35783904 35784620 -148504042 - MER50 LTR ERV1 -24 710 1 403 265 11 54 chr4 35784681 35784866 -148503796 + CT-rich Low_complexity Low_complexity 4 180 0 234 217 0 0 chr4 35784879 35784948 -148503714 + T-rich Low_complexity Low_complexity 1 69 0 25 65 0 0 chr4 35785911 35785957 -148502705 + AT_rich Low_complexity Low_complexity 1 46 0 27 0 0 0 chr4 35787491 35787518 -148501144 + AT_rich Low_complexity Low_complexity 1 27 0 1980 199 72 94 chr4 35787866 35788710 -148499952 - LTR1B LTR ERV1 0 826 1 343 302 249 0 chr4 35788729 35788918 -148499744 - MIR SINE MIR -13 249 14 2048 203 17 19 chr4 35789979 35790398 -148498264 + MER47B DNA MER2_type 1 418 0 646 267 14 0 chr4 35790427 35790573 -148498089 + MIR SINE MIR 4 151 -111 1603 127 15 112 chr4 35790617 35790948 -148497714 - AluSx SINE Alu -1 301 3 246 264 11 46 chr4 35792407 35792494 -148496168 + MER112 DNA MER1_type 2 85 -175 256 244 73 0 chr4 35792503 35792585 -148496077 - L1MC4 LINE L1 -1341 6701 6614 * 276 182 32 13 chr4 35792509 35792603 -148496059 + L1MC4 LINE L1 1995 6983 -1339 219 167 0 0 chr4 35792622 35792664 -148495998 + (CA)n Simple_repeat Simple_repeat 1 42 0 23 54 0 0 chr4 35794097 35794134 -148494528 + AT_rich Low_complexity Low_complexity 1 37 0 1876 109 18 18 chr4 35794134 35794408 -148494254 - AluSx SINE Alu -28 284 11 1088 260 78 27 chr4 35795014 35795387 -148493275 - MLT1D LTR MaLR 0 505 114 402 198 12 23 chr4 35795515 35795601 -148493061 - MLT1D LTR MaLR -418 87 3 2164 121 0 0 chr4 35798729 35799036 -148489626 + AluSc SINE Alu 1 307 -2 700 281 212 40 chr4 35799142 35799591 -148489071 - MLT1H LTR MaLR -2 547 22 767 227 93 53 chr4 35800132 35800453 -148488209 - MER46C DNA MER2_type -4 334 1 803 317 46 8 chr4 35800457 35800697 -148487965 - MIR SINE MIR -6 256 8 526 265 99 27 chr4 35800760 35800983 -148487679 - MIR SINE MIR -4 258 20 1969 113 3 3 chr4 35801850 35802178 -148486484 + AluSx SINE Alu 1 328 0 1849 136 3 18 chr4 35803267 35803553 -148485109 + AluSx SINE Alu 29 310 -2 215 343 150 21 chr4 35803890 35804030 -148484632 + L3b LINE CR1 1285 1442 -141 210 71 0 0 chr4 35805158 35805186 -148483476 + (A)n Simple_repeat Simple_repeat 1 28 0 231 88 0 0 chr4 35807662 35807696 -148480966 + (A)n Simple_repeat Simple_repeat 1 34 0 25 0 0 0 chr4 35808214 35808239 -148480423 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr4 35810227 35810252 -148478410 + AT_rich Low_complexity Low_complexity 1 25 0 306 0 0 0 chr4 35810946 35810980 -148477682 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chr4 35812277 35812298 -148476364 + AT_rich Low_complexity Low_complexity 1 21 0 206 163 0 20 chr4 35812778 35812827 -148475835 + T-rich Low_complexity Low_complexity 4 51 0 1211 207 28 38 chr4 35812829 35813119 -148475543 - AluJo SINE Alu -24 288 2 22 56 0 0 chr4 35814477 35814513 -148474149 + AT_rich Low_complexity Low_complexity 1 36 0 24 53 0 0 chr4 35814916 35814954 -148473708 + AT_rich Low_complexity Low_complexity 1 38 0 2349 97 0 0 chr4 35814961 35815259 -148473403 - AluSc SINE Alu -11 298 1 565 198 9 0 chr4 35815474 35815585 -148473077 - MER58 DNA MER1_type 0 2420 2309 393 301 9 9 chr4 35815590 35815703 -148472959 - MER58 DNA MER1_type -2303 117 5 273 208 292 0 chr4 35815782 35815878 -148472784 - MER94 DNA DNA -10 124 1 210 330 44 11 chr4 35818420 35818511 -148470151 - L2 LINE L2 -37 3235 3142 2919 112 12 0 chr4 35819133 35819536 -148469126 + MLT2A2 LTR ERVL 1 408 -45 277 256 0 0 chr4 35819547 35819629 -148469033 - L1MC4 LINE L1 -1347 6695 6614 327 253 0 0 chr4 35819629 35819724 -148468938 + (TA)n Simple_repeat Simple_repeat 2 96 0 274 192 0 0 chr4 35819741 35819793 -148468869 + MLT2A1 LTR ERVL 391 442 -2 1541 220 46 29 chr4 35819799 35820149 -148468513 - MLT1A1 LTR MaLR -3 362 7 288 136 17 17 chr4 35820275 35820334 -148468328 - MER3 DNA MER1_type -8 201 143 228 162 0 59 chr4 35821809 35821877 -148466785 + A-rich Low_complexity Low_complexity 3 66 0 29 47 0 0 chr4 35823128 35823171 -148465491 + AT_rich Low_complexity Low_complexity 1 43 0 737 268 64 5 chr4 35823197 35823417 -148465245 - MIR SINE MIR -26 236 4 297 322 8 42 chr4 35824061 35824179 -148464483 + L2 LINE L2 3142 3255 -17 216 0 0 0 chr4 35825592 35825616 -148463046 + (TG)n Simple_repeat Simple_repeat 2 25 0 290 130 0 0 chr4 35825668 35825714 -148462948 + MADE1 DNA Mariner 35 80 0 529 70 0 0 chr4 35825718 35825789 -148462873 + MADE1 DNA Mariner 10 80 0 440 321 59 5 chr4 35826023 35826231 -148462431 + MIR SINE MIR 31 260 -2 1075 217 31 11 chr4 35826616 35827107 -148461555 - MER34 LTR ERV1 -3 539 12 635 84 11 0 chr4 35827130 35827225 -148461437 + (TCTA)n Simple_repeat Simple_repeat 4 99 0 1433 52 0 0 chr4 35827225 35827399 -148461263 - L1PA7 LINE L1 -15 6139 5966 2027 97 10 55 chr4 35827628 35827939 -148460723 + AluSg SINE Alu 1 297 -13 230 377 142 9 chr4 35829919 35830025 -148458637 - L2 LINE L2 0 3272 3153 216 179 0 0 chr4 35830032 35830071 -148458591 + (TG)n Simple_repeat Simple_repeat 2 40 0 1492 167 161 23 chr4 35830225 35830573 -148458089 + MSTD LTR MaLR 1 396 0 211 322 61 70 chr4 35830989 35831104 -148457558 - L2 LINE L2 -1 3312 3199 2016 126 13 7 chr4 35831136 35831438 -148457224 - AluSx SINE Alu -8 304 1 780 149 6 31 chr4 35831440 35831601 -148457061 - L1MC3 LINE L1 -7 7778 7622 336 191 12 95 chr4 35831645 35831729 -148456933 - MLT2B3 LTR ERVL -268 286 210 1983 166 51 31 chr4 35831729 35832276 -148456386 - MLT2A2 LTR ERVL 0 554 1 1064 184 75 0 chr4 35832276 35832475 -148456187 - MLT2B3 LTR ERVL -340 214 1 3002 211 41 19 chr4 35832475 35832931 -148455731 - L1MC3 LINE L1 -163 7622 7142 2236 101 0 0 chr4 35832931 35833219 -148455443 - AluSg SINE Alu -22 288 1 3002 211 41 19 chr4 35833219 35833496 -148455166 - L1MC3 LINE L1 -643 7142 6873 2092 138 3 6 chr4 35833620 35833932 -148454730 - AluSx SINE Alu -1 311 1 435 38 0 0 chr4 35835017 35835070 -148453592 + (TC)n Simple_repeat Simple_repeat 2 54 0 27 0 0 0 chr4 35835964 35835991 -148452671 + AT_rich Low_complexity Low_complexity 1 27 0 198 0 0 0 chr4 35835991 35836013 -148452649 + (TG)n Simple_repeat Simple_repeat 1 22 0 21 0 0 0 chr4 35836063 35836084 -148452578 + AT_rich Low_complexity Low_complexity 1 21 0 272 182 11 0 chr4 35836167 35836255 -148452407 + (CA)n Simple_repeat Simple_repeat 1 89 0 1134 180 10 10 chr4 35836296 35836502 -148452160 - MER46A DNA MER2_type -29 207 2 3652 124 42 66 chr4 35837095 35837271 -148451391 + Tigger3b DNA MER2_type 1 180 -2848 1983 120 10 7 chr4 35837271 35837562 -148451100 - AluSx SINE Alu -18 294 3 3652 124 42 66 chr4 35837562 35838079 -148450583 + Tigger3b DNA MER2_type 180 677 -554 5814 131 26 4 chr4 35838124 35839570 -148449092 - L1PA11 LINE L1 0 6174 4699 3051 113 38 47 chr4 35839570 35839688 -148448974 + Tigger3b DNA MER2_type 660 778 -2251 1644 147 0 89 chr4 35839688 35840002 -148448660 - AluSx SINE Alu -26 286 1 3051 113 38 47 chr4 35840002 35840434 -148448228 + Tigger3b DNA MER2_type 778 1205 -27 418 326 90 15 chr4 35840873 35841207 -148447455 - MARNA DNA Mariner -155 431 73 2264 103 3 6 chr4 35841412 35841723 -148446939 - AluY SINE Alu -1 310 1 29 28 0 0 chr4 35841780 35841816 -148446846 + AT_rich Low_complexity Low_complexity 1 36 0 655 205 54 12 chr4 35841942 35842108 -148446554 - MER96B DNA MER1_type? -1 416 244 2349 83 0 13 chr4 35842307 35842620 -148446042 - AluY SINE Alu -2 309 1 464 367 57 16 chr4 35843428 35843676 -148444986 + MIR SINE MIR 1 258 -4 21 0 0 0 chr4 35844074 35844095 -148444567 + AT_rich Low_complexity Low_complexity 1 21 0 287 114 0 0 chr4 35844391 35844435 -148444227 - MADE1 DNA Mariner 0 80 37 427 288 0 30 chr4 35844499 35844631 -148444031 - MLT1L LTR MaLR -129 486 359 244 213 187 0 chr4 35844831 35844906 -148443756 - MLT1L LTR MaLR -526 89 1 294 29 0 0 chr4 35844913 35844948 -148443714 + (CA)n Simple_repeat Simple_repeat 2 36 0 2192 95 3 7 chr4 35845932 35846227 -148442435 + AluSg SINE Alu 1 294 -16 1887 111 50 30 chr4 35847459 35847757 -148440905 + AluSp SINE Alu 1 304 -9 1861 137 58 15 chr4 35848241 35848570 -148440092 - MER61A LTR ERV1 0 343 1 5256 149 120 27 chr4 35848791 35850200 -148438462 - pTR5 LTR ERV1 0 2438 741 400 330 141 19 chr4 35850516 35850998 -148437664 + HAL1b LINE L1 252 792 -556 2294 132 31 8 chr4 35851350 35851706 -148436956 - THE1B LTR MaLR 0 364 1 355 351 67 14 chr4 35851781 35851989 -148436673 - L3 LINE CR1 -129 1448 1230 1820 132 38 14 chr4 35853496 35853785 -148434877 - AluSx SINE Alu -16 296 1 22 0 0 0 chr4 35854265 35854287 -148434375 + AT_rich Low_complexity Low_complexity 1 22 0 303 216 52 82 chr4 35854506 35854640 -148434022 + MLT1J LTR MaLR 52 181 -330 26 93 0 0 chr4 35856118 35856193 -148432469 + AT_rich Low_complexity Low_complexity 1 75 0 219 139 0 0 chr4 35857006 35857042 -148431620 + (A)n Simple_repeat Simple_repeat 1 36 0 2661 94 3 0 chr4 35857526 35857887 -148430775 + THE1B LTR MaLR 1 362 -2 2040 116 12 44 chr4 35860052 35860371 -148428291 - AluSx SINE Alu 0 312 4 690 249 62 104 chr4 35860507 35860605 -148428057 + MLT1F LTR MaLR 1 102 -440 2087 126 0 10 chr4 35860605 35860898 -148427764 + AluSx SINE Alu 1 290 -22 690 249 62 104 chr4 35860898 35861153 -148427509 + MLT1F LTR MaLR 102 339 -203 892 236 18 84 chr4 35861169 35861444 -148427218 + MLT1D-int LTR MaLR 1109 1365 -6 1164 191 96 71 chr4 35861477 35861801 -148426861 + MLT1D LTR MaLR 28 359 -146 22 35 0 0 chr4 35861845 35861874 -148426788 + AT_rich Low_complexity Low_complexity 1 29 0 545 301 20 0 chr4 35862069 35862265 -148426397 - L1ME2 LINE L1 0 6164 5965 690 262 0 6 chr4 35862402 35862566 -148426096 - L1ME2 LINE L1 -592 5572 5410 2844 131 17 0 chr4 35862566 35862985 -148425677 + MSTB1 LTR MaLR 1 426 -6 1653 305 81 36 chr4 35862991 35863015 -148425647 - L1ME2 LINE L1 -756 5414 5393 2265 99 61 32 chr4 35863015 35863080 -148425582 - THE1A LTR MaLR 0 355 293 2029 107 7 0 chr4 35863080 35863351 -148425311 + AluSq SINE Alu 41 313 0 2265 99 61 32 chr4 35863351 35863630 -148425032 - THE1A LTR MaLR -62 293 1 10377 113 34 0 chr4 35863630 35865158 -148423504 - THE1A-int LTR MaLR 0 1580 1 2381 106 23 3 chr4 35865158 35865506 -148423156 - THE1A LTR MaLR 0 355 1 1653 305 81 36 chr4 35865506 35866359 -148422303 - L1ME2 LINE L1 -777 5393 4449 4600 74 44 61 chr4 35866359 35867059 -148421603 + LTR12 LTR ERV1 1 688 0 1653 305 81 36 chr4 35867059 35867510 -148421152 - L1ME2 LINE L1 -1721 4449 4020 323 225 0 71 chr4 35867503 35867619 -148421043 - L1MA7 LINE L1 -213 6083 5983 * 27 0 0 0 chr4 35867855 35867882 -148420780 + AT_rich Low_complexity Low_complexity 1 27 0 2358 78 3 0 chr4 35868044 35868338 -148420324 + AluSp SINE Alu 1 295 -18 263 295 0 0 chr4 35868366 35868461 -148420201 + L1MC4 LINE L1 6614 6708 -1334 314 270 16 9 chr4 35868528 35868653 -148420009 - L1M4 LINE L1 -364 5814 5685 2734 16 0 10 chr4 35868937 35869249 -148419413 - AluYb8 SINE Alu -9 309 1 24 0 0 0 chr4 35870204 35870228 -148418434 + AT_rich Low_complexity Low_complexity 1 24 0 1932 125 0 0 chr4 35870781 35871053 -148417609 + AluY SINE Alu 24 295 -16 253 286 118 17 chr4 35872118 35872237 -148416425 + MIR SINE MIR 121 251 -11 21 36 0 0 chr4 35872594 35872622 -148416040 + AT_rich Low_complexity Low_complexity 1 28 0 209 200 33 0 chr4 35873936 35873996 -148414666 + (TATG)n Simple_repeat Simple_repeat 3 64 0 2209 101 7 0 chr4 35874277 35874584 -148414078 + AluSp SINE Alu 1 309 -4 230 177 0 48 chr4 35875042 35875104 -148413558 + A-rich Low_complexity Low_complexity 3 61 0 279 334 87 49 chr4 35875107 35875290 -148413372 + MIR SINE MIR 28 214 -48 875 311 80 27 chr4 35875368 35875780 -148412882 + L2 LINE L2 2879 3312 -1 1508 204 32 55 chr4 35877099 35877501 -148411161 + MSTD LTR MaLR 4 396 0 21 36 0 0 chr4 35879344 35879372 -148409290 + AT_rich Low_complexity Low_complexity 1 28 0 277 232 9 89 chr4 35879750 35879862 -148408800 + MLT1H LTR MaLR 4 106 -443 1208 226 84 42 chr4 35879869 35880298 -148408364 - MLT1C LTR MaLR -16 451 5 577 267 87 103 chr4 35880302 35880561 -148408101 + MLT1H LTR MaLR 111 362 -187 1958 127 65 39 chr4 35880561 35880916 -148407746 + THE1B LTR MaLR 1 364 0 577 267 87 103 chr4 35880916 35881102 -148407560 + MLT1H LTR MaLR 362 549 0 1296 139 0 14 chr4 35881738 35881947 -148406715 + AluSg/x SINE Alu 105 310 -2 242 133 67 50 chr4 35882084 35882144 -148406518 - MLT1H LTR MaLR -202 340 280 1813 64 0 0 chr4 35882238 35882473 -148406189 - L1PA5 LINE L1 0 6154 5920 280 248 0 115 chr4 35882474 35882531 -148406131 - MLT1H LTR MaLR -285 264 225 1784 146 42 73 chr4 35882531 35882916 -148405746 - THE1C LTR MaLR 0 375 3 280 248 0 115 chr4 35882916 35882971 -148405691 - MLT1H LTR MaLR -324 225 165 201 226 0 0 chr4 35883419 35883472 -148405190 + (TG)n Simple_repeat Simple_repeat 2 54 0 1277 228 65 20 chr4 35884357 35884708 -148403954 - MLT1D LTR MaLR 0 505 139 25 65 0 0 chr4 35884843 35884889 -148403773 + AT_rich Low_complexity Low_complexity 1 46 0 1508 112 10 0 chr4 35885099 35885304 -148403358 - AluSc SINE Alu -20 289 83 302 169 26 78 chr4 35885867 35885944 -148402718 + MLT1L LTR MaLR 156 228 -387 661 259 45 77 chr4 35885948 35886390 -148402272 - MER57A LTR ERV1 -4 399 1 393 241 63 38 chr4 35886509 35886667 -148401995 + MLT1L LTR MaLR 421 582 -33 808 268 50 71 chr4 35886789 35887129 -148401533 - MLT1A2 LTR MaLR -41 333 1 853 241 113 43 chr4 35887244 35887501 -148401161 - AluJo SINE Alu -35 277 3 26 30 0 0 chr4 35887596 35887629 -148401033 + AT_rich Low_complexity Low_complexity 1 33 0 238 307 10 30 chr4 35887729 35887830 -148400832 - L1ME LINE L1 -394 5727 5629 430 226 33 122 chr4 35888356 35888537 -148400125 - MER91B DNA MER1_type -6 184 20 219 263 0 0 chr4 35888627 35888707 -148399955 + (TA)n Simple_repeat Simple_repeat 1 80 0 225 0 0 0 chr4 35888766 35888791 -148399871 + (CA)n Simple_repeat Simple_repeat 2 26 0 318 147 0 0 chr4 35888996 35889064 -148399598 + (TC)n Simple_repeat Simple_repeat 1 68 0 342 0 0 0 chr4 35889064 35889102 -148399560 + (CA)n Simple_repeat Simple_repeat 1 38 0 193 94 62 16 chr4 35889588 35889652 -148399010 + (TA)n Simple_repeat Simple_repeat 2 68 0 23 33 0 0 chr4 35889663 35889693 -148398969 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr4 35889724 35889747 -148398915 + AT_rich Low_complexity Low_complexity 1 23 0 1656 95 50 0 chr4 35889925 35890147 -148398515 + AluSc SINE Alu 59 291 -18 1496 199 36 0 chr4 35890147 35890428 -148398234 - Tigger3(Golem) DNA MER2_type -2738 291 1 593 238 0 16 chr4 35890442 35890568 -148398094 - FLAM_A SINE Alu -9 124 1 444 301 81 17 chr4 35891683 35891919 -148396743 - MER112 DNA MER1_type -4 256 6 418 243 71 62 chr4 35893016 35893226 -148395436 + MLT1J1 LTR MaLR 1 212 -234 252 329 168 31 chr4 35893448 35893609 -148395053 - MIR SINE MIR -58 204 22 585 302 40 22 chr4 35894000 35894222 -148394440 + MIR SINE MIR 31 256 -6 2300 73 0 7 chr4 35894947 35895248 -148393414 + AluY SINE Alu 1 299 -12 243 250 30 10 chr4 35895343 35895443 -148393219 + (TA)n Simple_repeat Simple_repeat 2 103 0 191 382 91 30 chr4 35897034 35897233 -148391429 + L2 LINE L2 2731 2941 -373 2049 104 0 39 chr4 35898143 35898450 -148390212 - AluSq SINE Alu -18 295 1 2549 133 21 25 chr4 35898559 35898995 -148389667 - Tigger2a DNA MER2_type 0 434 1 327 262 9 71 chr4 35898995 35899209 -148389453 + MER112 DNA MER1_type 47 248 -12 2010 192 39 15 chr4 35899358 35899770 -148388892 - MER61C LTR ERV1 0 434 13 369 121 0 0 chr4 35900054 35900112 -148388550 + L1MA2 LINE L1 6233 6290 -14 2167 126 0 7 chr4 35900142 35900444 -148388218 + AluSx SINE Alu 1 300 -12 28 0 0 0 chr4 35900892 35900920 -148387742 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 35900939 35900960 -148387702 + AT_rich Low_complexity Low_complexity 1 21 0 369 307 135 43 chr4 35901026 35901352 -148387310 + L2 LINE L2 2619 2974 -340 629 279 17 6 chr4 35901792 35901971 -148386691 - MIR SINE MIR -80 182 2 200 226 19 19 chr4 35952475 35952581 -148336081 + GA-rich Low_complexity Low_complexity 4 109 0 836 142 0 0 chr4 35952891 35953011 -148335651 - Alu SINE Alu -191 120 1 198 0 0 0 chr4 35953181 35953203 -148335459 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 624 264 47 5 chr4 35953314 35953507 -148335155 - L1MB2 LINE L1 -2 6169 5969 3966 164 42 12 chr4 35953511 35954321 -148334341 - L1MA4 LINE L1 -4 6296 5463 659 283 113 25 chr4 35954322 35954831 -148333831 + LTR28 LTR ERV1 1 1303 -134 274 139 0 0 chr4 35955020 35955063 -148333599 - L1MA4 LINE L1 -835 5465 5423 3570 221 73 25 chr4 35955489 35957383 -148331279 - L1MC1 LINE L1 -313 6300 4314 1985 199 3 0 chr4 35957384 35957730 -148330932 + MER7A DNA MER2_type 2 346 0 361 244 46 35 chr4 35957730 35957909 -148330753 - L1MC1 LINE L1 -2111 4315 4136 318 70 0 0 chr4 35957910 35957953 -148330709 - L1PA7 LINE L1 -11 6143 6101 2369 200 67 20 chr4 35957963 35958855 -148329807 - L1MC1 LINE L1 -3654 2772 1837 29 47 0 0 chr4 35958863 35958906 -148329756 + AT_rich Low_complexity Low_complexity 1 43 0 5113 170 73 63 chr4 35959051 35960260 -148328402 - L1MC1 LINE L1 -5186 1240 20 21 57 0 0 chr4 35960588 35960623 -148328039 + AT_rich Low_complexity Low_complexity 1 35 0 1347 182 97 0 chr4 35961547 35961816 -148326846 - AluSx SINE Alu -17 295 1 59 53 0 0 chr4 35962065 35962159 -148326503 + AT_rich Low_complexity Low_complexity 1 94 0 275 379 26 13 chr4 35962415 35962568 -148326094 - MIR SINE MIR -86 176 22 240 35 0 0 chr4 35962998 35963027 -148325635 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 579 275 110 14 chr4 35963131 35963394 -148325268 - MLT1H LTR MaLR -219 330 1 904 275 16 12 chr4 35963452 35963703 -148324959 + MIR SINE MIR 1 252 -10 307 318 0 37 chr4 35964078 35964185 -148324477 - LTR16C LTR ERVL 0 491 389 1204 197 0 5 chr4 35964578 35964791 -148323871 - MLT1A1 LTR MaLR -2 363 152 2492 230 13 40 chr4 35964934 35965559 -148323103 + MLT1E2 LTR MaLR 19 626 0 223 214 0 18 chr4 35965884 35965940 -148322722 + A-rich Low_complexity Low_complexity 2 56 0 236 277 23 69 chr4 35965970 35966100 -148322562 - L2 LINE L2 -472 2842 2719 1151 256 35 19 chr4 35966272 35966633 -148322029 + L1ME2 LINE L1 5803 6330 -4 24 0 0 0 chr4 35966941 35966965 -148321697 + AT_rich Low_complexity Low_complexity 1 24 0 254 299 45 30 chr4 35967097 35967231 -148321431 - L1M4 LINE L1 -1905 4241 4106 275 316 38 38 chr4 35967375 35967508 -148321154 + MIR SINE MIR 68 200 -62 415 250 65 48 chr4 35967516 35967684 -148320978 + MLT1H LTR MaLR 1 171 -378 24 77 0 0 chr4 35967905 35967957 -148320705 + AT_rich Low_complexity Low_complexity 1 52 0 261 269 0 0 chr4 35968193 35968260 -148320402 + (TA)n Simple_repeat Simple_repeat 2 68 0 293 234 93 9 chr4 35968379 35968486 -148320176 + MER58 DNA MER1_type 21 136 -2284 338 349 43 29 chr4 35968572 35968781 -148319881 - HAL1b LINE L1 -747 601 390 1823 207 31 3 chr4 35968809 35969161 -148319501 + MLT2D LTR ERVL 1 362 -52 288 231 0 0 chr4 35969233 35969337 -148319325 + (TA)n Simple_repeat Simple_repeat 1 104 0 445 314 23 8 chr4 35969342 35969606 -148319056 - L1MEc LINE L1 -4883 1513 1246 1901 185 43 41 chr4 35969685 35970128 -148318534 - L1MB8 LINE L1 -13 6165 5722 2082 125 3 3 chr4 35970568 35970871 -148317791 + AluSx SINE Alu 1 303 -9 1144 126 0 24 chr4 35970871 35971038 -148317624 + AluSq SINE Alu 134 296 -17 661 265 0 0 chr4 35971437 35971584 -148317078 - FRAM SINE Alu -26 150 4 531 294 59 20 chr4 35971587 35971791 -148316871 + MLT1H LTR MaLR 71 282 -267 354 238 68 62 chr4 35971839 35972008 -148316654 + MLT1H LTR MaLR 371 547 -8 225 393 67 7 chr4 35972613 35972763 -148315899 - MIR3 SINE MIR -14 194 36 202 234 0 0 chr4 35973238 35973285 -148315377 + MIR SINE MIR 97 143 -119 1537 228 33 20 chr4 35973318 35973709 -148314953 - MSTD LTR MaLR 0 396 1 2641 280 49 28 chr4 35974731 35975796 -148312866 + L1MC3 LINE L1 8 1076 -4969 673 264 42 2 chr4 35975815 35976167 -148312495 + L1MC3 LINE L1 2504 2873 -3691 270 89 0 22 chr4 35976173 35976216 -148312446 + MLT1A1 LTR MaLR 63 104 -261 245 140 80 0 chr4 35976216 35976266 -148312396 - MLT2A2 LTR ERVL 0 453 400 263 648 0 0 chr4 35976272 35976451 -148312211 + (TA)n Simple_repeat Simple_repeat 2 180 0 268 122 0 0 chr4 35976476 35976517 -148312145 + MLT2A2 LTR ERVL 405 445 -8 237 33 0 0 chr4 35976517 35976547 -148312115 + (TC)n Simple_repeat Simple_repeat 2 31 0 225 139 0 0 chr4 35976547 35976590 -148312072 + (TA)n Simple_repeat Simple_repeat 1 43 0 271 261 15 0 chr4 35976728 35976793 -148311869 - AluJ/FRAM SINE Alu -12 290 225 * 2514 86 11 30 chr4 35976783 35977155 -148311507 - MLT2A1 LTR ERVL -79 365 1 1262 252 8 4 chr4 35977155 35977420 -148311242 + MLT1A1 LTR MaLR 100 365 0 5788 257 58 39 chr4 35977420 35980693 -148307969 + L1MC3 LINE L1 2958 5821 -743 1203 309 27 38 chr4 35980713 35981270 -148307392 + L1PA15-16 LINE L1 1 551 -6298 8182 248 55 42 chr4 35981459 35983063 -148305599 + L1M2 LINE L1 655 2237 -4611 1718 52 5 0 chr4 35983063 35983274 -148305388 + AluYa5 SINE Alu 1 212 -99 8182 248 55 42 chr4 35983274 35984555 -148304107 + L1M2 LINE L1 2237 3500 -3348 306 0 0 0 chr4 35984555 35984589 -148304073 + (CA)n Simple_repeat Simple_repeat 2 35 0 8182 248 55 42 chr4 35984589 35985964 -148302698 + L1M2 LINE L1 3500 5270 -1578 3461 230 45 43 chr4 35985953 35987011 -148301651 + L1MC3 LINE L1 6379 7438 -765 * 405 418 31 15 chr4 35987039 35987515 -148301147 + L1 LINE L1 1 484 -5797 1147 257 56 24 chr4 35987829 35988242 -148300420 + L1 LINE L1 1122 1547 -4734 5101 186 22 26 chr4 35988405 35989538 -148299124 + L1 LINE L1 3637 4765 -1585 12618 258 31 30 chr4 35989547 35994984 -148293678 + L1MA4 LINE L1 12 6003 -1735 5276 152 10 4 chr4 35994984 35996521 -148292141 + L1PA15 LINE L1 4611 6165 0 12618 258 31 30 chr4 35996521 35998253 -148290409 + L1MA4 LINE L1 6003 7732 -6 3429 204 19 18 chr4 35998245 35998575 -148290087 + L1MC3 LINE L1 6196 5937 -422 * 2289 41 0 34 chr4 35998575 35998893 -148289769 + AluY SINE Alu 1 308 0 3429 204 19 18 chr4 35998893 35999317 -148289345 + L1MC3 LINE L1 5936 6358 -1 598 304 78 0 chr4 35999351 35999581 -148289081 - MIR SINE MIR -1 261 14 1299 130 14 5 chr4 36000108 36000324 -148288338 - L1MA4A LINE L1 0 6303 6086 289 143 0 0 chr4 36000327 36000376 -148288286 + L1MA4A LINE L1 6039 6087 -216 2020 99 4 15 chr4 36001049 36001321 -148287341 - AluSx SINE Alu -23 289 21 31 68 0 0 chr4 36001321 36001380 -148287282 + AT_rich Low_complexity Low_complexity 1 59 0 195 184 0 0 chr4 36001448 36001486 -148287176 + CT-rich Low_complexity Low_complexity 2 39 0 2025 128 0 0 chr4 36002621 36002917 -148285745 - AluSg1 SINE Alu -13 296 1 21 82 0 0 chr4 36003197 36003246 -148285416 + AT_rich Low_complexity Low_complexity 1 49 0 3341 192 22 56 chr4 36003589 36004344 -148284318 - L1MB3 LINE L1 -120 6063 5336 1515 186 38 21 chr4 36004344 36004634 -148284028 - AluJo SINE Alu -17 295 1 3341 192 22 56 chr4 36004634 36004785 -148283877 - L1MB3 LINE L1 -847 5336 5181 1183 262 124 6 chr4 36004797 36005312 -148283350 - Charlie7 DNA MER1_type -500 2112 1537 638 297 59 24 chr4 36005427 36005481 -148283181 - Charlie7 DNA MER1_type -1235 1377 1326 2324 129 5 24 chr4 36005481 36005852 -148282810 + THE1B LTR MaLR 1 364 0 638 297 59 24 chr4 36005852 36006087 -148282575 - Charlie7 DNA MER1_type -1286 1326 1078 22 94 0 0 chr4 36006281 36006345 -148282317 + AT_rich Low_complexity Low_complexity 1 64 0 23 54 0 0 chr4 36006532 36006569 -148282093 + AT_rich Low_complexity Low_complexity 1 37 0 596 231 19 13 chr4 36006901 36007057 -148281605 - L1MD3 LINE L1 -2 7993 7837 2164 115 44 3 chr4 36007157 36007497 -148281165 - LTR57 LTR ERVL -57 354 1 21 36 0 0 chr4 36007608 36007636 -148281026 + AT_rich Low_complexity Low_complexity 1 28 0 222 136 0 0 chr4 36007751 36007795 -148280867 + (CA)n Simple_repeat Simple_repeat 2 45 0 979 180 0 6 chr4 36008197 36008375 -148280287 - MER6A DNA MER2_type 0 605 429 252 0 0 0 chr4 36008382 36008410 -148280252 + (CA)n Simple_repeat Simple_repeat 2 29 0 1122 187 5 29 chr4 36008411 36008620 -148280042 - MER6A DNA MER2_type -385 220 17 1994 136 0 0 chr4 36008709 36009003 -148279659 + AluSg SINE Alu 1 294 -16 217 410 78 0 chr4 36009219 36009385 -148279277 + L2 LINE L2 2178 2356 -958 242 272 22 65 chr4 36011253 36011304 -148277358 + L2 LINE L2 3190 3237 -76 2077 122 0 7 chr4 36011304 36011598 -148277064 - AluSx SINE Alu -20 292 1 242 272 22 65 chr4 36011598 36011638 -148277024 + L2 LINE L2 3237 3277 -36 231 254 0 48 chr4 36012087 36012150 -148276512 - L3 LINE CR1 -4 1573 1514 2170 90 0 4 chr4 36012632 36012954 -148275708 + AluSc SINE Alu 1 321 0 198 349 84 42 chr4 36013970 36014136 -148274526 + MIR SINE MIR 3 175 -87 279 316 78 31 chr4 36014997 36015190 -148273472 - MIR SINE MIR -8 254 53 22 0 0 0 chr4 36017236 36017258 -148271404 + AT_rich Low_complexity Low_complexity 1 22 0 2184 87 0 10 chr4 36018489 36018787 -148269875 - AluY SINE Alu 0 311 17 4130 195 35 20 chr4 36018796 36020532 -148268130 - L1MA7 LINE L1 -154 6137 4372 242 192 68 14 chr4 36020540 36020613 -148268049 - L1MC4 LINE L1 -1328 6714 6638 200 224 40 13 chr4 36021852 36021928 -148266734 + (TA)n Simple_repeat Simple_repeat 2 79 0 2411 239 54 8 chr4 36021984 36022705 -148265957 - MER3 DNA MER1_type 0 786 80 2244 24 0 0 chr4 36022905 36023159 -148265503 - AluY SINE Alu -8 303 50 2135 110 3 26 chr4 36024158 36024467 -148264195 + AluSx SINE Alu 3 304 -8 393 246 173 52 chr4 36024623 36024728 -148263934 + MER58C DNA MER1_type 2 93 -2327 243 0 0 0 chr4 36024728 36024755 -148263907 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 393 246 173 52 chr4 36024755 36024840 -148263822 + MER58C DNA MER1_type 93 215 0 25 65 0 0 chr4 36024944 36024990 -148263672 + AT_rich Low_complexity Low_complexity 1 46 0 288 268 299 0 chr4 36026157 36026284 -148262378 + ERVL LTR ERVL 4161 4325 -1439 252 0 0 0 chr4 36027534 36027562 -148261100 + (TG)n Simple_repeat Simple_repeat 2 29 0 2788 16 0 0 chr4 36029011 36029322 -148259340 - AluYa5 SINE Alu 0 311 1 3388 98 6 0 chr4 36029842 36030322 -148258340 + L1PA7 LINE L1 5666 6148 -6 1057 79 0 0 chr4 36030355 36030494 -148258168 - AluY SINE Alu -15 296 158 410 262 8 16 chr4 36030498 36030620 -148258042 + L1M4 LINE L1 4942 5062 -1084 874 258 39 35 chr4 36030707 36031154 -148257508 + MLT1G3 LTR MaLR 1 549 -46 252 0 0 0 chr4 36033071 36033099 -148255563 + (TG)n Simple_repeat Simple_repeat 2 29 0 2170 78 0 0 chr4 36033099 36033383 -148255279 - AluY SINE Alu -27 284 1 247 298 16 16 chr4 36033674 36033795 -148254867 + L1ME4a LINE L1 5979 6099 -22 1915 133 20 3 chr4 36033884 36034186 -148254476 - AluSx SINE Alu -5 307 1 279 329 37 24 chr4 36034353 36034599 -148254063 - HERVL LTR ERVL -1667 3987 3739 1108 274 74 6 chr4 36034622 36034987 -148253675 - HERVL LTR ERVL -3998 998 609 1032 319 56 12 chr4 36035076 36035558 -148253104 - HERVL LTR ERVL -4492 504 2 409 219 0 0 chr4 36035559 36035641 -148253021 - LTR16A LTR ERVL 0 450 369 593 296 22 6 chr4 36035714 36035893 -148252769 - LTR16A LTR ERVL -96 354 173 420 325 58 19 chr4 36035985 36036174 -148252488 - MLT1J2 LTR MaLR 0 450 254 633 238 34 0 chr4 36036174 36036321 -148252341 + MER3 DNA MER1_type 1 152 -57 205 200 0 22 chr4 36036331 36036376 -148252286 + (TATATG)n Simple_repeat Simple_repeat 3 46 0 732 210 24 63 chr4 36036392 36036597 -148252065 - MLT1J1 LTR MaLR -241 205 9 928 169 22 0 chr4 36036629 36036813 -148251849 - L1MA10 LINE L1 -7 6327 6140 211 104 42 0 chr4 36036813 36036861 -148251801 + (TA)n Simple_repeat Simple_repeat 1 50 0 503 175 50 25 chr4 36036863 36036983 -148251679 - L1MA10 LINE L1 -192 5976 5854 1903 191 73 35 chr4 36037053 36037504 -148251158 + MLT1D LTR MaLR 31 498 -7 322 113 0 19 chr4 36037628 36037681 -148250981 - MLT2A2 LTR ERVL -2 451 400 211 86 0 99 chr4 36037682 36037763 -148250899 + (TA)n Simple_repeat Simple_repeat 2 74 0 967 140 57 0 chr4 36037763 36037920 -148250742 - MLT2A2 LTR ERVL -40 413 248 482 318 178 17 chr4 36037931 36038286 -148250376 + L2 LINE L2 1269 1680 -1634 32 57 0 0 chr4 36038619 36038672 -148249990 + AT_rich Low_complexity Low_complexity 1 53 0 613 246 58 77 chr4 36039355 36039451 -148249211 - MIR SINE MIR 0 262 166 903 231 59 0 chr4 36039451 36039654 -148249008 - MER20 DNA MER1_type -1 218 4 613 246 58 77 chr4 36039654 36039817 -148248845 - MIR SINE MIR -96 166 8 563 282 35 59 chr4 36040279 36040481 -148248181 + MIR SINE MIR 2 198 -64 21 0 0 0 chr4 36040499 36040520 -148248142 + AT_rich Low_complexity Low_complexity 1 21 0 655 200 6 6 chr4 36040520 36040700 -148247962 + (TA)n Simple_repeat Simple_repeat 1 180 0 305 280 11 11 chr4 36040708 36040801 -148247861 + L1MC4 LINE L1 6614 6706 -1336 205 300 14 0 chr4 36040861 36040931 -148247731 + (TA)n Simple_repeat Simple_repeat 2 72 0 9499 94 4 6 chr4 36041157 36042535 -148246127 + L1P LINE L1 4016 5391 -755 1849 298 152 36 chr4 36042641 36043763 -148244899 + L2 LINE L2 1544 2796 -518 1600 236 43 9 chr4 36043805 36044245 -148244417 + L1 LINE L1 4102 4556 -1590 1198 195 37 142 chr4 36044245 36044702 -148243960 - MLT2B1 LTR ERVL 0 414 6 316 170 19 113 chr4 36044706 36044804 -148243858 + L1 LINE L1 4551 4640 -1506 759 142 57 0 chr4 36044804 36044945 -148243717 + L1MB3 LINE L1 6034 6182 -1 254 341 37 0 chr4 36045010 36045092 -148243570 + L2 LINE L2 2893 2977 -336 * 605 288 26 31 chr4 36045087 36045316 -148243346 + L2 LINE L2 3084 3311 -2 2181 112 48 31 chr4 36047069 36047427 -148241235 - THE1B LTR MaLR 0 364 1 3968 166 13 28 chr4 36047510 36048064 -148240598 + Tigger2 DNA MER2_type 2 544 -2174 1950 134 0 32 chr4 36048064 36048378 -148240284 - AluSg SINE Alu 0 310 7 3968 166 13 28 chr4 36048378 36048577 -148240085 + Tigger2 DNA MER2_type 544 744 -1974 1649 147 12 0 chr4 36048636 36048894 -148239768 + Tigger2 DNA MER2_type 2458 2718 0 303 28 0 0 chr4 36049080 36049116 -148239546 + (TC)n Simple_repeat Simple_repeat 1 36 0 1621 188 10 0 chr4 36049117 36049405 -148239257 - AluJo SINE Alu -21 291 1 339 25 0 0 chr4 36050937 36050977 -148237685 + (CA)n Simple_repeat Simple_repeat 2 41 0 1946 179 34 3 chr4 36050979 36051330 -148237332 - MLT1A1 LTR MaLR -3 362 1 239 186 31 21 chr4 36051338 36051435 -148237227 + (TATAA)n Simple_repeat Simple_repeat 5 102 0 234 186 0 0 chr4 36051441 36051484 -148237178 - L1MC4 LINE L1 -1342 6700 6658 243 204 19 19 chr4 36051484 36051538 -148237124 + Tigger5 DNA MER2_type 2 55 -2268 547 194 11 0 chr4 36051542 36051635 -148237027 + Tigger5 DNA MER2_type 2230 2323 0 33 25 0 0 chr4 36052233 36052273 -148236389 + AT_rich Low_complexity Low_complexity 1 40 0 2262 101 0 0 chr4 36052621 36052929 -148235733 + AluSq SINE Alu 1 308 -5 31 0 0 0 chr4 36054063 36054094 -148234568 + AT_rich Low_complexity Low_complexity 1 31 0 247 386 124 13 chr4 36055534 36055687 -148232975 - MIR3 SINE MIR -9 199 30 22 0 0 0 chr4 36055723 36055745 -148232917 + AT_rich Low_complexity Low_complexity 1 22 0 4175 163 65 48 chr4 36056198 36057083 -148231579 - MER4D LTR ERV1 0 903 3 2595 151 27 0 chr4 36057089 36057501 -148231161 - MSTA LTR MaLR 0 428 6 992 175 9 33 chr4 36058306 36058517 -148230145 - MLT2C1 LTR ERVL -191 206 1 1150 211 0 30 chr4 36060357 36060594 -148228068 - AluJb SINE Alu -1 311 82 5214 257 35 30 chr4 36062133 36062170 -148226492 + L1MB7 LINE L1 1 36 -6506 2203 88 0 0 chr4 36062170 36062496 -148226166 + AluY SINE Alu 1 326 0 5214 257 35 30 chr4 36062496 36064121 -148224541 + L1MB7 LINE L1 36 1673 -4869 1053 269 10 46 chr4 36064247 36064637 -148224025 + L1MB7 LINE L1 1719 2094 -4552 5644 219 64 73 chr4 36064744 36066372 -148222290 + L1MB7 LINE L1 3240 4880 -1802 641 151 84 17 chr4 36066372 36066491 -148222171 + AluJb SINE Alu 4 130 -182 5644 219 64 73 chr4 36066491 36068204 -148220458 + L1MB7 LINE L1 4880 6667 -15 21 36 0 0 chr4 36068536 36068564 -148220098 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr4 36069982 36070008 -148218654 + AT_rich Low_complexity Low_complexity 1 26 0 276 215 139 0 chr4 36070454 36070533 -148218129 - MLT1B LTR MaLR -2 388 299 2103 193 76 70 chr4 36070883 36070922 -148217740 - MER92B LTR ERV1 0 636 599 464 95 27 0 chr4 36070922 36070996 -148217666 + MADE1 DNA Mariner 1 76 -4 2103 193 76 70 chr4 36070996 36071588 -148217074 - MER92B LTR ERV1 -37 599 1 25 0 0 0 chr4 36072129 36072154 -148216508 + AT_rich Low_complexity Low_complexity 1 25 0 2164 95 10 3 chr4 36072303 36072598 -148216064 - AluSx SINE Alu -15 297 1 334 232 62 45 chr4 36072796 36072908 -148215754 + MER58C DNA MER1_type 102 215 0 23 33 0 0 chr4 36074280 36074310 -148214352 + AT_rich Low_complexity Low_complexity 1 30 0 869 113 0 0 chr4 36074310 36074425 -148214237 - AluSc SINE Alu -23 286 172 193 340 191 14 chr4 36074547 36074688 -148213974 - MIR SINE MIR -79 183 18 805 264 204 16 chr4 36074766 36075134 -148213528 - LTR16B LTR ERVL -3 461 25 340 241 15 0 chr4 36075823 36075960 -148212702 + (TA)n Simple_repeat Simple_repeat 2 140 0 28 0 0 0 chr4 36076179 36076207 -148212455 + AT_rich Low_complexity Low_complexity 1 28 0 1685 152 32 0 chr4 36076207 36076516 -148212146 - L1MA5A LINE L1 -2 6295 5977 1549 283 36 29 chr4 36078913 36079461 -148209201 + L1MCb LINE L1 9 560 -5485 2085 214 39 81 chr4 36079585 36079707 -148208955 + L1MCb LINE L1 570 696 -5868 2275 145 107 5 chr4 36079707 36080101 -148208561 + MER61C LTR ERV1 1 434 0 2085 214 39 81 chr4 36080101 36080273 -148208389 + L1MCb LINE L1 696 874 -5690 2090 109 14 0 chr4 36080273 36080557 -148208105 + AluSx SINE Alu 21 308 -4 2085 214 39 81 chr4 36080557 36081482 -148207180 + L1MCb LINE L1 874 1757 -4807 * 4796 183 47 6 chr4 36081451 36082529 -148206133 + L1MA7 LINE L1 5577 6698 -11 1519 241 54 22 chr4 36082528 36083225 -148205437 + L1MCb LINE L1 2044 2617 -3947 * 5728 215 55 13 chr4 36083225 36083350 -148205312 + L1MC3 LINE L1 6298 6416 -1369 2196 107 3 31 chr4 36083350 36083669 -148204993 + AluSq SINE Alu 1 310 -3 5728 215 55 13 chr4 36083669 36084969 -148203693 + L1MC3 LINE L1 6416 7783 -2 1721 154 55 0 chr4 36084981 36085274 -148203388 + AluSx SINE Alu 1 309 -3 24 53 0 0 chr4 36085332 36085370 -148203292 + AT_rich Low_complexity Low_complexity 1 38 0 2779 166 18 28 chr4 36085592 36086201 -148202461 + pTR5 LTR ERV1 743 1345 -1093 3897 135 19 130 chr4 36086216 36087140 -148201522 + LTR12 LTR ERV1 5 826 0 1921 130 13 3 chr4 36087230 36087529 -148201133 - AluSc SINE Alu -7 302 1 325 157 0 119 chr4 36087532 36087650 -148201012 - MSTB LTR MaLR -330 98 3 24 0 0 0 chr4 36087692 36087716 -148200946 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr4 36088530 36088556 -148200106 + AT_rich Low_complexity Low_complexity 1 26 0 266 270 0 0 chr4 36088865 36088939 -148199723 + Charlie8 DNA MER1_type 71 144 -2273 2668 91 12 61 chr4 36088958 36089066 -148199596 + MER48 LTR ERV1 1 113 -274 2079 29 0 0 chr4 36089066 36089312 -148199350 + L1PA5 LINE L1 5909 6154 0 2668 91 12 61 chr4 36089312 36089610 -148199052 + MER48 LTR ERV1 113 387 0 36 23 0 0 chr4 36091027 36091070 -148197592 + AT_rich Low_complexity Low_complexity 1 43 0 307 344 23 23 chr4 36091423 36091551 -148197111 - L2 LINE L2 -5 3308 3181 427 232 96 57 chr4 36091630 36091807 -148196855 + MER63A DNA MER1_type 27 210 0 235 342 38 44 chr4 36091817 36091975 -148196687 - L2 LINE L2 -181 3091 2935 354 268 147 42 chr4 36093910 36094100 -148194562 - HAL1 LINE L1 -2 2505 2296 511 272 168 3 chr4 36094196 36094494 -148194168 - HAL1 LINE L1 -125 2382 2036 651 164 9 0 chr4 36094591 36094701 -148193961 - FLAM_A SINE Alu -20 122 12 750 222 76 0 chr4 36094770 36094968 -148193694 - HAL1 LINE L1 -726 1781 1569 21 0 0 0 chr4 36095262 36095283 -148193379 + AT_rich Low_complexity Low_complexity 1 21 0 3350 221 48 33 chr4 36095856 36097439 -148191223 - L1MB7 LINE L1 -6 6178 4564 1725 193 13 50 chr4 36097439 36097818 -148190844 + MLT1A1 LTR MaLR 1 365 0 3350 221 48 33 chr4 36097818 36098227 -148190435 - L1MB7 LINE L1 -1620 4564 4163 2865 127 16 2 chr4 36098248 36098698 -148189964 + Tigger4(Zombi) DNA MER2_type 2275 2730 -1 1315 263 113 60 chr4 36098799 36099014 -148189648 - L1MB7 LINE L1 -2085 4061 3859 378 0 0 0 chr4 36099014 36099056 -148189606 + (TG)n Simple_repeat Simple_repeat 2 43 0 1315 263 113 60 chr4 36099056 36099470 -148189192 - L1MB7 LINE L1 -2287 3859 3469 2187 164 33 28 chr4 36099470 36099896 -148188766 + MSTA LTR MaLR 1 428 0 1315 263 113 60 chr4 36099896 36099927 -148188735 - L1MB7 LINE L1 -2677 3469 3441 1565 146 20 20 chr4 36099927 36100173 -148188489 - AluSx SINE Alu -66 246 1 1315 263 113 60 chr4 36100173 36100465 -148188197 - L1MB7 LINE L1 -2705 3441 3056 1530 179 20 43 chr4 36100499 36100845 -148187817 + MER44D DNA MER2_type 1 608 -1 422 232 12 0 chr4 36100852 36100951 -148187711 - MIR SINE MIR -67 141 50 22 35 0 0 chr4 36101962 36101991 -148186671 + AT_rich Low_complexity Low_complexity 1 29 0 1637 112 12 0 chr4 36102220 36102479 -148186183 + L1MA5A LINE L1 6036 6297 0 1108 267 44 60 chr4 36102671 36102881 -148185781 - L2 LINE L2 -261 3052 2840 1529 176 52 144 chr4 36102881 36103479 -148185183 + MER67A LTR ERV1 1 543 0 1108 267 44 60 chr4 36103479 36103816 -148184846 - L2 LINE L2 -473 2840 2502 297 0 0 0 chr4 36104456 36104489 -148184173 + (TCCA)n Simple_repeat Simple_repeat 4 36 0 263 386 0 0 chr4 36104832 36104933 -148183729 + MIR SINE MIR 46 146 -62 224 220 22 132 chr4 36105300 36105391 -148183271 - L2 LINE L2 -18 3254 3174 30 0 0 0 chr4 36105815 36105845 -148182817 + AT_rich Low_complexity Low_complexity 1 30 0 733 266 43 96 chr4 36106348 36106815 -148181847 + LTR16A1 LTR ERVL 16 457 0 191 341 0 12 chr4 36107287 36107372 -148181290 + L3 LINE CR1 919 1002 -575 210 292 69 0 chr4 36107486 36107558 -148181104 + L3 LINE CR1 1197 1273 -304 1496 213 155 12 chr4 36107670 36107916 -148180746 + MLT1D LTR MaLR 6 215 -290 2110 99 7 3 chr4 36107916 36108244 -148180418 + AluSp SINE Alu 1 329 0 1496 213 155 12 chr4 36108244 36108428 -148180234 + MLT1D LTR MaLR 215 499 -6 4145 99 9 3 chr4 36108513 36109097 -148179565 - LTR8 LTR ERV1 -104 587 1 8788 85 17 23 chr4 36109097 36109782 -148178880 - HUERS-P1 LTR ERV1 0 6263 5575 3598 115 0 6 chr4 36109782 36110296 -148178366 + MER9 LTR ERVK 1 511 0 8788 85 17 23 chr4 36110296 36111594 -148177068 - HUERS-P1 LTR ERV1 -688 5575 4138 * 18128 96 27 43 chr4 36111584 36114371 -148174291 - HUERS-P1 LTR ERV1 -3522 2741 1 1071 90 14 0 chr4 36114371 36114515 -148174147 - LTR8 LTR ERV1 0 691 546 496 255 90 55 chr4 36114653 36115090 -148173572 + MER113 DNA MER1_type? 37 521 0 332 343 99 22 chr4 36115090 36115271 -148173391 + MIR SINE MIR 9 203 -59 283 275 99 0 chr4 36115442 36115533 -148173129 + L2 LINE L2 3190 3289 -24 1200 203 12 111 chr4 36115587 36115992 -148172670 - MLT1A1 LTR MaLR 0 365 1 1180 251 10 7 chr4 36116229 36116520 -148172142 - MER58B DNA MER1_type 0 341 50 1748 238 33 6 chr4 36116525 36117043 -148171619 - L1PB4 LINE L1 -813 5333 4802 * 2592 138 9 7 chr4 36117040 36117468 -148171194 + L1PB4 LINE L1 5345 5773 -383 191 0 75 25 chr4 36117475 36117515 -148171147 + (TA)n Simple_repeat Simple_repeat 2 43 0 370 135 71 35 chr4 36117550 36117720 -148170942 + (TA)n Simple_repeat Simple_repeat 2 177 0 225 229 0 49 chr4 36117749 36117810 -148170852 - L1PB4 LINE L1 -195 5961 5904 266 214 14 14 chr4 36117810 36117880 -148170782 + (TA)n Simple_repeat Simple_repeat 2 71 0 246 32 0 0 chr4 36117880 36117911 -148170751 + (CA)n Simple_repeat Simple_repeat 2 32 0 2025 160 20 0 chr4 36117911 36118267 -148170395 + L1PB4 LINE L1 5794 6156 0 293 355 89 23 chr4 36118267 36118481 -148170181 + L2 LINE L2 3039 3266 -47 242 345 9 35 chr4 36118847 36118963 -148169699 - MIR SINE MIR -106 156 44 279 349 53 12 chr4 36120123 36120292 -148168370 - MIR SINE MIR -85 177 2 556 51 0 0 chr4 36121075 36121153 -148167509 + L1PA2 LINE L1 6078 6155 0 1709 157 110 28 chr4 36122108 36122472 -148166190 - L1PA16 LINE L1 -1 6165 5772 * 4043 103 32 2 chr4 36122441 36123033 -148165629 - THE1B-int LTR MaLR -970 610 1 2088 144 19 32 chr4 36123033 36123402 -148165260 - THE1B LTR MaLR 0 364 1 751 140 77 0 chr4 36123402 36123545 -148165117 + L1P4 LINE L1 5331 5484 -682 * 2197 132 0 0 chr4 36123540 36123851 -148164811 - THE1-int LTR MaLR -836 744 434 * 5885 113 22 14 chr4 36123838 36124699 -148163963 + THE1B-int LTR MaLR 713 1580 0 1911 113 107 27 chr4 36124706 36125043 -148163619 + THE1B LTR MaLR 1 364 0 3985 234 24 14 chr4 36125043 36126200 -148162462 - L1PA16 LINE L1 -811 5335 4171 21 0 0 0 chr4 36127658 36127679 -148160983 + AT_rich Low_complexity Low_complexity 1 21 0 1562 219 34 11 chr4 36127735 36128092 -148160570 - MLT1A1 LTR MaLR 0 365 1 1833 186 20 9 chr4 36128147 36128491 -148160171 + MER7A DNA MER2_type 1 346 0 209 263 76 82 chr4 36128814 36128985 -148159677 + MIR SINE MIR 72 241 -21 396 322 51 23 chr4 36129130 36129344 -148159318 + MLT1I LTR MaLR 1 220 -189 336 289 18 9 chr4 36129380 36129494 -148159168 + MLT1I LTR MaLR 295 409 0 800 238 84 116 chr4 36130469 36130738 -148157924 + HsTC2a DNA Tc2 32 285 -1615 2163 120 3 3 chr4 36130738 36131047 -148157615 + AluSg SINE Alu 1 309 -1 800 238 84 116 chr4 36131047 36131181 -148157481 + HsTC2a DNA Tc2 285 422 -322 1259 107 48 21 chr4 36131225 36131412 -148157250 + AluSg SINE Alu 3 194 -116 574 266 67 39 chr4 36131437 36131719 -148156943 + HsTC2a DNA Tc2 449 738 -4 1703 148 4 14 chr4 36132037 36132314 -148156348 - AluSx SINE Alu -22 290 17 211 309 59 0 chr4 36132323 36132391 -148156271 - L2 LINE L2 0 3272 3201 336 285 23 15 chr4 36132475 36132605 -148156057 - MER94 DNA DNA 0 134 4 317 308 26 27 chr4 36133388 36133582 -148155080 + L1MCa LINE L1 65 175 -5870 5985 203 116 24 chr4 36133643 36135388 -148153274 + L1MC3 LINE L1 5219 7125 -660 22 99 0 0 chr4 36136564 36136635 -148152027 + AT_rich Low_complexity Low_complexity 1 71 0 25 0 0 0 chr4 36136679 36136704 -148151958 + AT_rich Low_complexity Low_complexity 1 25 0 1166 248 19 13 chr4 36137192 36137510 -148151152 + L1MD3 LINE L1 7674 7993 -2 23 54 0 0 chr4 36137842 36137879 -148150783 + AT_rich Low_complexity Low_complexity 1 37 0 22 94 0 0 chr4 36138066 36138130 -148150532 + AT_rich Low_complexity Low_complexity 1 64 0 3684 34 0 0 chr4 36138301 36138742 -148149920 - L1P LINE L1 -1045 5101 4661 1544 268 144 21 chr4 36138760 36138996 -148149666 + Charlie7 DNA MER1_type 1078 1283 -1329 2324 129 5 24 chr4 36138996 36139367 -148149295 - THE1B LTR MaLR 0 364 1 1544 268 144 21 chr4 36139367 36140051 -148148611 + Charlie7 DNA MER1_type 1283 2112 -500 3946 178 36 54 chr4 36140063 36140214 -148148448 + L1MB3 LINE L1 5181 5333 -850 1529 183 38 21 chr4 36140214 36140504 -148148158 + AluJo SINE Alu 1 295 -17 3946 178 36 54 chr4 36140504 36141366 -148147296 + L1MB3 LINE L1 5333 6182 -1 275 314 33 0 chr4 36141411 36141532 -148147130 + Charlie7 DNA MER1_type 2200 2324 -288 335 209 29 35 chr4 36141635 36141807 -148146855 + (TA)n Simple_repeat Simple_repeat 1 171 0 1479 210 47 3 chr4 36142092 36142435 -148146227 - MER46B DNA MER2_type -3 233 1 3028 307 89 38 chr4 36142533 36142949 -148145713 + L2 LINE L2 1264 1657 -1656 2129 92 0 0 chr4 36142949 36143232 -148145430 + AluY SINE Alu 21 303 -8 3028 307 89 38 chr4 36143232 36144008 -148144654 + L2 LINE L2 1657 2392 -921 2064 99 3 10 chr4 36144008 36144302 -148144360 + AluSc SINE Alu 1 292 -17 3028 307 89 38 chr4 36144302 36145007 -148143655 + L2 LINE L2 2392 3313 0 5063 78 0 3 chr4 36146154 36146825 -148141837 - L1PA7 LINE L1 -6 6148 5480 238 224 0 0 chr4 36148242 36148291 -148140371 + (TA)n Simple_repeat Simple_repeat 2 50 0 3129 70 27 27 chr4 36148386 36148783 -148139879 + MLT2A1 LTR ERVL 3 402 -42 216 0 0 0 chr4 36148783 36148807 -148139855 + (CA)n Simple_repeat Simple_repeat 2 25 0 3129 70 27 27 chr4 36148807 36148851 -148139811 + MLT2A1 LTR ERVL 401 444 0 41347 80 7 2 chr4 36148851 36154205 -148134457 + HERVL-A1 LTR ERVL 1 5378 -276 1369 226 35 46 chr4 36154309 36154681 -148133981 + MLT1B LTR MaLR 21 388 -2 180 0 0 0 chr4 36155206 36155226 -148133436 + (TG)n Simple_repeat Simple_repeat 2 21 0 2198 107 3 10 chr4 36155518 36155817 -148132845 + AluSp SINE Alu 2 298 -15 21 36 0 0 chr4 36157233 36157261 -148131401 + AT_rich Low_complexity Low_complexity 1 28 0 775 133 70 0 chr4 36157359 36157502 -148131160 + MLT1B LTR MaLR 1 153 -237 565 179 49 154 chr4 36157496 36157742 -148130920 + MLT1B LTR MaLR 70 289 -101 * 881 323 77 35 chr4 36157731 36157905 -148130757 + MER45C DNA AcHobo 93 258 -695 4775 92 12 1 chr4 36157905 36158565 -148130097 - PABL_B LTR ERV1 0 667 1 881 323 77 35 chr4 36158565 36158925 -148129737 + MER45C DNA AcHobo 258 649 -304 269 324 10 20 chr4 36158978 36159080 -148129582 - MLT1I LTR MaLR -287 122 22 3783 138 19 3 chr4 36159083 36159708 -148128954 - MER41B LTR ERV1 0 635 1 848 266 78 20 chr4 36159909 36160153 -148128509 + Charlie1a DNA MER1_type 5 262 -1193 1546 192 135 83 chr4 36160206 36160792 -148127870 + MER21B LTR ERV1 40 776 -155 180 0 0 0 chr4 36160793 36160813 -148127849 + (AATTG)n Simple_repeat Simple_repeat 2 21 0 1079 266 34 90 chr4 36160830 36161318 -148127344 + MSTD-int LTR MaLR 1027 1490 -161 998 192 89 24 chr4 36161427 36161749 -148126913 + MSTD LTR MaLR 1 396 0 374 216 95 0 chr4 36161749 36161823 -148126839 + MER21B LTR ERV1 735 815 -48 4303 216 44 22 chr4 36161861 36163009 -148125653 + Charlie1a DNA MER1_type 282 1454 -1 261 237 7 151 chr4 36163176 36163315 -148125347 - L2 LINE L2 -43 3270 3152 180 0 0 0 chr4 36163837 36163857 -148124805 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 210 167 24 0 chr4 36164138 36164180 -148124482 + (CA)n Simple_repeat Simple_repeat 2 44 0 2559 27 3 0 chr4 36164478 36164776 -148123886 + AluY SINE Alu 1 299 -12 680 333 91 25 chr4 36165111 36165553 -148123109 - L2 LINE L2 -38 3275 2805 225 319 55 55 chr4 36165561 36165743 -148122919 - L2 LINE L2 -402 2912 2731 22 35 0 0 chr4 36165922 36165951 -148122711 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 36166176 36166197 -148122465 + AT_rich Low_complexity Low_complexity 1 21 0 404 264 168 0 chr4 36167286 36167411 -148121251 - LTR67 LTR ERVL 0 557 412 1068 270 89 34 chr4 36167769 36168272 -148120390 + MLT1H LTR MaLR 12 542 -7 218 365 0 0 chr4 36169174 36169248 -148119414 + MIR SINE MIR 189 262 0 252 267 22 22 chr4 36169685 36169775 -148118887 + GA-rich Low_complexity Low_complexity 2 91 0 555 172 75 65 chr4 36169803 36169989 -148118673 - MER53 DNA DNA 0 189 2 225 348 11 0 chr4 36170155 36170247 -148118415 + L2 LINE L2 2305 2397 -917 * 409 287 102 92 chr4 36170221 36170524 -148118138 + L2 LINE L2 3006 3311 -2 205 371 37 71 chr4 36170521 36170901 -148117761 + L2 LINE L2 2362 2728 -586 * 243 125 0 0 chr4 36170953 36170993 -148117669 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 306 0 0 0 chr4 36171079 36171113 -148117549 + (TC)n Simple_repeat Simple_repeat 2 35 0 378 0 0 0 chr4 36171384 36171426 -148117236 + (TG)n Simple_repeat Simple_repeat 2 43 0 425 234 0 0 chr4 36171436 36171530 -148117132 + MER58 DNA MER1_type 27 120 -95 295 309 74 20 chr4 36171551 36171700 -148116962 - L1ME3A LINE L1 -287 5883 5727 484 250 47 16 chr4 36171917 36172045 -148116617 + L2 LINE L2 3182 3313 0 186 350 72 10 chr4 36172354 36172451 -148116211 + MIR3 SINE MIR 105 207 -1 2094 115 0 34 chr4 36172653 36172974 -148115688 + AluSg SINE Alu 1 310 0 25 0 0 0 chr4 36173055 36173080 -148115582 + AT_rich Low_complexity Low_complexity 1 25 0 1085 86 0 6 chr4 36173850 36174012 -148114650 + HERVL-A1 LTR ERVL 5494 5654 0 2962 92 50 2 chr4 36174012 36174395 -148114267 + MLT2A1 LTR ERVL 1 407 -37 300 91 0 0 chr4 36174395 36174439 -148114223 + (TA)n Simple_repeat Simple_repeat 2 45 0 2962 92 50 2 chr4 36174439 36174479 -148114183 + MLT2A1 LTR ERVL 407 444 0 187 53 26 53 chr4 36174863 36174901 -148113761 + (TTTTTG)n Simple_repeat Simple_repeat 2 38 0 2283 109 39 25 chr4 36176549 36176908 -148111754 - THE1B LTR MaLR 0 364 1 1058 232 5 14 chr4 36177795 36178015 -148110647 + MER58A DNA MER1_type 1 218 -6 4517 178 25 5 chr4 36178431 36179296 -148109366 - L1MC1 LINE L1 0 6333 5451 265 256 171 0 chr4 36179460 36179542 -148109120 + L2 LINE L2 3177 3272 0 2376 81 0 0 chr4 36180725 36181022 -148107640 - AluY SINE Alu -14 297 1 22 0 0 0 chr4 36182864 36182886 -148105776 + AT_rich Low_complexity Low_complexity 1 22 0 24 85 0 0 chr4 36183012 36183071 -148105591 + AT_rich Low_complexity Low_complexity 1 59 0 1279 131 39 9 chr4 36183240 36183529 -148105133 + THE1B LTR MaLR 1 364 0 646 161 51 106 chr4 36183606 36183807 -148104855 - MLT2D LTR ERVL 0 414 213 1319 328 100 47 chr4 36184223 36185075 -148103587 + L2 LINE L2 97 993 -2321 1047 305 41 26 chr4 36185116 36185578 -148103084 + L2 LINE L2 1893 2361 -953 2213 57 0 0 chr4 36185613 36186009 -148102653 + L1P3 LINE L1 5092 5487 -667 386 39 19 0 chr4 36187082 36187134 -148101528 + (TTTA)n Simple_repeat Simple_repeat 1 53 0 1297 188 4 47 chr4 36187141 36187418 -148101244 - AluJo SINE Alu -37 275 11 1756 37 0 0 chr4 36188099 36188313 -148100349 - L1PA4 LINE L1 -8 6147 5934 3694 206 43 13 chr4 36188566 36189240 -148099422 + L1M4 LINE L1 7 708 -5676 260 0 57 0 chr4 36189240 36189275 -148099387 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 3694 206 43 13 chr4 36189275 36189365 -148099297 + L1M4 LINE L1 708 794 -5590 5208 62 3 9 chr4 36189380 36190060 -148098602 - L1PA8 LINE L1 -9 6163 5488 1114 207 93 23 chr4 36190063 36190459 -148098203 + L1M4 LINE L1 5196 5619 -763 222 118 0 0 chr4 36192106 36192140 -148096522 + (AATTG)n Simple_repeat Simple_repeat 4 37 0 2178 72 36 0 chr4 36192433 36192710 -148095952 - AluSg SINE Alu -23 287 1 329 290 55 64 chr4 36193355 36193669 -148094993 - L1MEd LINE L1 -2525 3604 3266 249 346 4 26 chr4 36193684 36193912 -148094750 - L1MEd LINE L1 -4972 1147 925 453 214 58 0 chr4 36196214 36196317 -148092345 - MIR SINE MIR 0 262 154 256 327 53 44 chr4 36197016 36197129 -148091533 + MIR SINE MIR 1 114 -148 4087 182 19 24 chr4 36197710 36198507 -148090155 - MER54B LTR ERVL 0 793 1 2341 64 0 0 chr4 36198855 36199162 -148089500 - AluSg SINE Alu 0 307 1 353 276 31 49 chr4 36201760 36201923 -148086739 + L2 LINE L2 3149 3308 -5 327 292 84 32 chr4 36202781 36202935 -148085727 - MIR SINE MIR -1 261 100 * 631 301 45 29 chr4 36202930 36203176 -148085486 - MIR SINE MIR 0 262 13 543 292 107 23 chr4 36203217 36203433 -148085229 + MIR SINE MIR 29 262 0 1606 221 43 2 chr4 36204411 36204805 -148083857 - L1PA16 LINE L1 -861 5285 4876 4955 149 29 5 chr4 36204805 36205657 -148083005 + L1PA16 LINE L1 5283 6155 -11 2108 116 0 3 chr4 36207029 36207322 -148081340 + AluSq SINE Alu 5 296 -17 31 0 0 0 chr4 36207325 36207356 -148081306 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr4 36207412 36207438 -148081224 + AT_rich Low_complexity Low_complexity 1 26 0 1039 214 29 0 chr4 36207485 36207691 -148080971 - MER58A DNA MER1_type -12 212 1 1278 137 5 15 chr4 36209325 36209530 -148079132 + AluSx SINE Alu 5 207 -105 711 220 47 0 chr4 36209586 36209736 -148078926 - FRAM SINE Alu -27 149 1 368 289 40 112 chr4 36210221 36210293 -148078369 - MIR SINE MIR -1 261 185 1407 279 98 28 chr4 36210293 36210902 -148077760 + MLT1E1 LTR MaLR 3 654 0 368 289 40 112 chr4 36210902 36211106 -148077556 - MIR SINE MIR -77 185 5 346 361 47 12 chr4 36211114 36211283 -148077379 - MIR SINE MIR -70 192 18 23 0 0 0 chr4 36211803 36211826 -148076836 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr4 36214455 36214490 -148074172 + AT_rich Low_complexity Low_complexity 1 35 0 736 297 92 60 chr4 36214502 36214708 -148073954 - L2 LINE L2 -7 3306 3108 369 0 0 0 chr4 36214708 36214749 -148073913 + (TA)n Simple_repeat Simple_repeat 1 41 0 736 297 92 60 chr4 36214749 36214996 -148073666 - L2 LINE L2 -205 3108 2838 211 244 50 92 chr4 36215085 36215143 -148073519 - MIR SINE MIR -74 188 136 710 235 105 10 chr4 36215143 36215343 -148073319 - MER20 DNA MER1_type 0 219 1 211 244 50 92 chr4 36215343 36215403 -148073259 - MIR SINE MIR -126 136 75 2170 83 17 3 chr4 36215741 36216043 -148072619 - L1P4 LINE L1 -493 5673 5368 2155 130 49 47 chr4 36216047 36216454 -148072208 + L1PA16 LINE L1 5750 6157 -9 1944 144 3 3 chr4 36217711 36218016 -148070646 - AluSq SINE Alu 0 305 1 1773 194 5 22 chr4 36219409 36219780 -148068882 + MLT1A1 LTR MaLR 1 365 0 1189 240 50 36 chr4 36220114 36220498 -148068164 + MLT1B LTR MaLR 1 389 -1 195 376 43 0 chr4 36220599 36220692 -148067970 + MIR3 SINE MIR 81 177 -31 872 251 106 52 chr4 36220841 36221284 -148067378 - MLT1C LTR MaLR 0 467 1 23 0 0 0 chr4 36221450 36221473 -148067189 + AT_rich Low_complexity Low_complexity 1 23 0 2439 180 4 51 chr4 36221954 36222448 -148066214 + Tigger3b DNA MER2_type 2 472 -759 604 82 63 6 chr4 36222476 36222634 -148066028 + (TA)n Simple_repeat Simple_repeat 2 168 0 3224 169 88 9 chr4 36222662 36223347 -148065315 + Tigger3b DNA MER2_type 493 1231 0 21 71 0 0 chr4 36223619 36223661 -148065001 + AT_rich Low_complexity Low_complexity 1 42 0 24 32 0 0 chr4 36223740 36223771 -148064891 + AT_rich Low_complexity Low_complexity 1 31 0 1020 230 50 76 chr4 36224123 36224505 -148064157 - MLT1B LTR MaLR -2 386 1 1947 147 7 3 chr4 36224698 36225005 -148063657 + AluSx SINE Alu 3 310 -2 182 306 71 24 chr4 36225196 36225281 -148063381 + MIR SINE MIR 92 180 -82 2187 98 0 0 chr4 36225670 36225965 -148062697 + AluSc SINE Alu 1 295 -14 186 43 0 0 chr4 36226316 36226339 -148062323 + (TA)n Simple_repeat Simple_repeat 2 24 0 489 115 26 0 chr4 36226782 36226860 -148061802 + MADE1 DNA Mariner 1 80 0 251 399 21 7 chr4 36226985 36227128 -148061534 - MIR SINE MIR -105 157 13 464 277 28 23 chr4 36228882 36229059 -148059603 - MER5B DNA MER1_type 0 178 1 193 282 81 60 chr4 36229259 36229408 -148059254 + L2 LINE L2 3147 3298 -15 23 0 0 0 chr4 36229940 36229963 -148058699 + AT_rich Low_complexity Low_complexity 1 23 0 269 326 58 77 chr4 36230045 36230306 -148058356 - MIR SINE MIR -2 260 5 2145 168 33 2 chr4 36230360 36230758 -148057904 - MSTB LTR MaLR -2 424 15 541 236 220 16 chr4 36231289 36231471 -148057191 + MER20 DNA MER1_type 1 219 0 996 158 18 0 chr4 36232517 36232861 -148055801 - AluSx SINE Alu 0 490 144 947 114 23 0 chr4 36232914 36233045 -148055617 - AluSx SINE Alu -176 137 4 335 296 179 25 chr4 36233292 36233488 -148055174 - L1ME LINE L1 -296 5825 5600 25 75 0 0 chr4 36233703 36233756 -148054906 + AT_rich Low_complexity Low_complexity 1 53 0 295 345 144 40 chr4 36233812 36234166 -148054496 - L2 LINE L2 0 3313 2923 766 231 9 38 chr4 36234898 36235110 -148053552 + MER63A DNA MER1_type 4 209 -1 27 29 0 0 chr4 36236007 36236041 -148052621 + AT_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr4 36236230 36236252 -148052410 + AT_rich Low_complexity Low_complexity 1 22 0 436 178 11 33 chr4 36236631 36236721 -148051941 - Charlie1 DNA MER1_type -1253 1508 1421 300 329 0 0 chr4 36236729 36236805 -148051857 - Charlie1 DNA MER1_type -2683 78 3 993 321 46 32 chr4 36236807 36237313 -148051349 + L2 LINE L2 2793 3304 -9 335 263 34 76 chr4 36237344 36237426 -148051236 - HAL1 LINE L1 -1493 1014 930 1989 127 3 0 chr4 36237426 36237739 -148050923 - AluSx SINE Alu 0 314 1 335 263 34 76 chr4 36237739 36237917 -148050745 - HAL1 LINE L1 -1577 930 764 1765 174 30 66 chr4 36238006 36238542 -148050120 + MLT2A2 LTR ERVL 1 418 -35 2055 110 10 0 chr4 36238542 36238832 -148049830 - AluY SINE Alu -18 293 1 1765 174 30 66 chr4 36238832 36238867 -148049795 + MLT2A2 LTR ERVL 418 453 0 885 252 32 9 chr4 36238971 36239189 -148049473 + MER58A DNA MER1_type 1 223 -1 26 50 0 0 chr4 36239687 36239727 -148048935 + AT_rich Low_complexity Low_complexity 1 40 0 27 81 0 0 chr4 36240115 36240177 -148048485 + AT_rich Low_complexity Low_complexity 1 62 0 548 231 22 8 chr4 36240220 36240354 -148048308 + MLT1D LTR MaLR 3 138 -367 357 343 70 0 chr4 36240451 36240623 -148048039 + L1ME3A LINE L1 5147 5330 -816 1301 320 60 17 chr4 36240692 36241008 -148047654 + L1ME3A LINE L1 5432 5733 -437 333 0 0 0 chr4 36241008 36241045 -148047617 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 1301 320 60 17 chr4 36241045 36241432 -148047230 + L1ME3A LINE L1 5733 6165 -5 1161 193 24 60 chr4 36242188 36242626 -148046036 - MLT1D LTR MaLR 0 505 1 1907 184 33 32 chr4 36243099 36243650 -148045012 - MLT2A2 LTR ERVL 0 554 3 1004 205 56 14 chr4 36243694 36243988 -148044674 + LTR24B LTR ERV1 231 467 0 789 304 26 11 chr4 36243988 36244254 -148044408 + LTR24B-int LTR ERV1 1 270 -4853 792 322 54 37 chr4 36246541 36246969 -148041693 + MER84-int LTR ERV1 149 583 -4064 352 323 42 39 chr4 36247531 36247862 -148040800 + MER84-int LTR ERV1 3314 3645 -3156 310 336 18 27 chr4 36247891 36248114 -148040548 + MER84-int LTR ERV1 4718 4938 -3797 1692 173 4 0 chr4 36249583 36249860 -148038802 + AluSx SINE Alu 30 307 -5 337 258 96 22 chr4 36250790 36250968 -148037694 + MER84-int LTR ERV1 4265 4455 -499 892 238 47 55 chr4 36251486 36251871 -148036791 + LTR24B LTR ERV1 188 467 0 1951 223 101 94 chr4 36252242 36253236 -148035426 - MER4-int LTR ERV1 -1006 5592 2522 273 276 32 73 chr4 36253239 36253362 -148035300 - MER52A LTR ERV1 -4 1751 1634 954 270 94 97 chr4 36253383 36254194 -148034468 - MER52A LTR ERV1 -296 1459 652 930 185 51 65 chr4 36254195 36254276 -148034386 - MER4-int LTR ERV1 -2224 4021 3940 198 0 0 0 chr4 36254276 36254298 -148034364 + (CAA)n Simple_repeat Simple_repeat 2 23 0 930 185 51 65 chr4 36254298 36254555 -148034107 - MER4-int LTR ERV1 -2305 3940 2477 317 225 0 56 chr4 36254627 36254716 -148033946 - MER4-int LTR ERV1 -2868 3730 3647 323 275 42 97 chr4 36254817 36255148 -148033514 - MER4-int LTR ERV1 -2572 2551 2239 * 367 204 132 24 chr4 36255141 36255308 -148033354 - MER4-int LTR ERV1 -6377 1743 1559 507 128 20 39 chr4 36255405 36255507 -148033155 + L1MA3 LINE L1 6206 6305 0 467 263 32 5 chr4 36255510 36255696 -148032966 - MER4-int LTR ERV1 -6590 1530 1340 1000 253 45 86 chr4 36255755 36256337 -148032325 - MER4-int LTR ERV1 -2751 2120 1563 736 235 137 35 chr4 36256358 36256643 -148032019 - MER34 LTR ERV1 -195 347 34 315 236 8 126 chr4 36256940 36257067 -148031595 - MER4-int LTR ERV1 -4048 823 712 548 240 31 106 chr4 36257189 36257443 -148031219 - MER4-int LTR ERV1 -4583 288 54 209 264 45 32 chr4 36257980 36258135 -148030527 + (TATATG)n Simple_repeat Simple_repeat 4 160 0 219 266 0 0 chr4 36259493 36259557 -148029105 + CT-rich Low_complexity Low_complexity 4 67 0 1762 171 4 4 chr4 36259725 36260035 -148028627 - AluJb SINE Alu 0 310 1 314 164 0 14 chr4 36260496 36260551 -148028111 + CT-rich Low_complexity Low_complexity 1 56 -16 225 0 0 0 chr4 36260551 36260576 -148028086 + (CA)n Simple_repeat Simple_repeat 1 25 0 314 164 0 14 chr4 36260576 36260593 -148028069 + CT-rich Low_complexity Low_complexity 56 72 0 1230 85 11 17 chr4 36261938 36262115 -148026547 + AluY SINE Alu 136 311 0 236 294 0 24 chr4 36262228 36262313 -148026349 + L1MEc LINE L1 176 258 -6138 217 211 0 0 chr4 36262443 36262481 -148026181 - L3 LINE CR1 -156 1421 1384 2370 50 3 10 chr4 36262666 36262965 -148025697 + AluY SINE Alu 1 297 -14 250 316 95 30 chr4 36263236 36263404 -148025258 - L2 LINE L2 -2 3311 3133 288 308 0 0 chr4 36263795 36263873 -148024789 + CT-rich Low_complexity Low_complexity 2 79 0 268 350 21 21 chr4 36263879 36264022 -148024640 - MIR SINE MIR -71 191 49 1175 216 66 69 chr4 36265258 36265637 -148023025 + MLT1B LTR MaLR 1 378 -12 316 319 78 21 chr4 36266083 36266274 -148022388 + MIR SINE MIR 54 255 -7 285 376 56 11 chr4 36266752 36266930 -148021732 - MIR SINE MIR -57 205 20 24 67 0 0 chr4 36267163 36267208 -148021454 + AT_rich Low_complexity Low_complexity 1 45 0 308 98 0 0 chr4 36267837 36267878 -148020784 - MER53 DNA DNA 0 189 149 1600 188 25 53 chr4 36267894 36268293 -148020369 + MLT1B LTR MaLR 3 390 0 2127 123 0 0 chr4 36268534 36268827 -148019835 + AluSg SINE Alu 1 293 -17 333 280 34 0 chr4 36269039 36269157 -148019505 - L1ME4a LINE L1 -1 6120 5999 5987 99 6 1 chr4 36269198 36270044 -148018618 - L1PA8A LINE L1 -28 6103 5254 216 320 49 41 chr4 36270393 36270515 -148018147 + L2 LINE L2 3145 3267 -5 478 342 121 0 chr4 36270845 36271184 -148017478 + HsTC2 DNA Tc2 485 864 -1034 26 0 0 0 chr4 36271369 36271395 -148017267 + AT_rich Low_complexity Low_complexity 1 26 0 1682 186 3 0 chr4 36271416 36271711 -148016951 + AluJo SINE Alu 15 310 -2 333 68 0 0 chr4 36271720 36271764 -148016898 + (GGAA)n Simple_repeat Simple_repeat 4 47 0 186 291 36 0 chr4 36271823 36271878 -148016784 + MIR SINE MIR 74 130 -78 297 336 68 29 chr4 36272196 36272415 -148016247 - L1ME4a LINE L1 -224 5897 5654 2057 109 3 0 chr4 36272415 36272726 -148015936 - AluSp SINE Alu 0 312 1 297 336 68 29 chr4 36272726 36272889 -148015773 - L1ME4a LINE L1 -467 5654 5499 192 301 126 55 chr4 36273042 36273225 -148015437 + L2 LINE L2 2155 2350 -964 203 130 0 43 chr4 36273583 36273629 -148015033 + (TAAAAA)n Simple_repeat Simple_repeat 4 47 0 22 35 0 0 chr4 36273646 36273675 -148014987 + AT_rich Low_complexity Low_complexity 1 29 0 383 75 0 252 chr4 36274354 36274461 -148014201 - MADE1 DNA Mariner 0 80 1 26 0 0 0 chr4 36275352 36275378 -148013284 + AT_rich Low_complexity Low_complexity 1 26 0 3318 211 65 9 chr4 36275742 36276609 -148012053 + L1MB8 LINE L1 5256 6170 -8 25 0 0 0 chr4 36277143 36277168 -148011494 + AT_rich Low_complexity Low_complexity 1 25 0 24 96 0 0 chr4 36277703 36277776 -148010886 + AT_rich Low_complexity Low_complexity 1 73 0 520 330 87 42 chr4 36277886 36278289 -148010373 - HAL1 LINE L1 -868 1639 1219 332 317 81 34 chr4 36280292 36280762 -148007900 - L1ME3A LINE L1 -306 5864 5373 205 222 19 0 chr4 36280791 36280845 -148007817 + T-rich Low_complexity Low_complexity 4 58 0 22 56 0 0 chr4 36281935 36281971 -148006691 + AT_rich Low_complexity Low_complexity 1 36 0 258 32 0 0 chr4 36283045 36283076 -148005586 + (TG)n Simple_repeat Simple_repeat 1 31 0 183 42 0 0 chr4 36283863 36283887 -148004775 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 463 303 13 7 chr4 36284826 36284981 -148003681 - MLT1I LTR MaLR -253 156 1 1547 205 45 22 chr4 36285009 36285293 -148003369 + MLT1A1 LTR MaLR 1 296 -69 2202 116 7 0 chr4 36285293 36285603 -148003059 - AluSx SINE Alu 0 312 1 1547 205 45 22 chr4 36285603 36285674 -148002988 + MLT1A1 LTR MaLR 296 364 -1 1635 186 9 15 chr4 36285872 36286211 -148002451 + MER1B DNA MER1_type 1 337 0 874 304 80 26 chr4 36287366 36287754 -148000908 - MLT1I LTR MaLR 0 409 1 26 74 0 0 chr4 36288994 36289048 -147999614 + AT_rich Low_complexity Low_complexity 1 54 0 842 216 2 6 chr4 36289050 36289234 -147999428 + MER58B DNA MER1_type 37 340 -1 22 0 0 0 chr4 36289256 36289278 -147999384 + AT_rich Low_complexity Low_complexity 1 22 0 34 65 0 0 chr4 36289377 36289439 -147999223 + AT_rich Low_complexity Low_complexity 1 62 0 328 305 67 43 chr4 36289703 36289867 -147998795 + MIR SINE MIR 1 168 -94 282 29 0 0 chr4 36291105 36291140 -147997522 + (TG)n Simple_repeat Simple_repeat 1 35 0 1004 209 115 69 chr4 36291276 36291625 -147997037 - MLT1A1 LTR MaLR 0 365 1 2423 230 25 68 chr4 36291701 36292393 -147996269 + LTR8 LTR ERV1 30 691 0 301 301 28 75 chr4 36293114 36293300 -147995362 - MIR SINE MIR -14 248 73 1495 167 57 18 chr4 36294061 36294397 -147994265 + L1PA16 LINE L1 5816 6164 -2 32 26 0 0 chr4 36294415 36294454 -147994208 + AT_rich Low_complexity Low_complexity 1 39 0 222 315 0 0 chr4 36295057 36295111 -147993551 - MIR SINE MIR -182 80 27 23 0 0 0 chr4 36295415 36295438 -147993224 + AT_rich Low_complexity Low_complexity 1 23 0 32 31 0 46 chr4 36295804 36295869 -147992793 + AT_rich Low_complexity Low_complexity 1 62 0 2267 88 0 52 chr4 36296523 36296851 -147991811 - AluY SINE Alu 0 311 1 191 325 52 0 chr4 36297136 36297213 -147991449 + MIR SINE MIR 80 160 -102 198 143 0 0 chr4 36298040 36298075 -147990587 + (TC)n Simple_repeat Simple_repeat 2 36 0 237 288 90 27 chr4 36300819 36300930 -147987732 + L2 LINE L2 3196 3313 0 1540 84 5 0 chr4 36302739 36302954 -147985708 - L1PA8 LINE L1 0 6172 5957 613 335 37 0 chr4 36304861 36305052 -147983610 + MIR SINE MIR 1 198 -64 1366 186 28 0 chr4 36305075 36305322 -147983340 + AluJb SINE Alu 29 282 -30 1505 256 55 21 chr4 36305371 36305805 -147982857 + MLT1F1 LTR MaLR 5 453 -114 405 0 0 0 chr4 36305958 36306003 -147982659 + (CA)n Simple_repeat Simple_repeat 2 46 0 2276 251 26 4 chr4 36306003 36306541 -147982121 - MER89 LTR ERV1 -9 550 1 238 237 85 0 chr4 36307386 36307445 -147981217 - L2 LINE L2 0 3313 3250 204 403 67 20 chr4 36308922 36309071 -147979591 + L2 LINE L2 3117 3272 0 261 0 0 0 chr4 36309383 36309412 -147979250 + (T)n Simple_repeat Simple_repeat 1 29 0 1953 153 138 13 chr4 36309591 36309983 -147978679 - L1MA3 LINE L1 0 6305 5865 2656 29 0 3 chr4 36310074 36310385 -147978277 - AluYb8 SINE Alu -8 310 1 185 0 40 0 chr4 36310471 36310496 -147978166 + (CA)n Simple_repeat Simple_repeat 2 27 0 2683 42 6 0 chr4 36310546 36310879 -147977783 + L1PA4 LINE L1 5821 6155 0 183 100 0 0 chr4 36310934 36310964 -147977698 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 189 0 0 0 chr4 36311022 36311043 -147977619 + (TTCA)n Simple_repeat Simple_repeat 2 22 0 208 347 20 0 chr4 36311242 36311340 -147977322 - L2 LINE L2 -1216 2098 1999 1802 126 53 0 chr4 36311597 36311898 -147976764 - L1PA13 LINE L1 -1 6162 5846 1781 148 21 3 chr4 36313903 36314194 -147974468 + AluSx SINE Alu 1 296 -16 227 53 0 26 chr4 36315631 36315669 -147972993 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 203 184 20 0 chr4 36315687 36315736 -147972926 + (TG)n Simple_repeat Simple_repeat 1 50 0 235 329 14 0 chr4 36315740 36315810 -147972852 + MIR SINE MIR 59 129 -133 206 290 30 50 chr4 36315916 36316016 -147972646 - MIR SINE MIR -66 142 45 259 367 19 60 chr4 36316048 36316263 -147972399 - L2 LINE L2 -478 2836 2631 375 88 0 29 chr4 36317561 36317629 -147971033 - L1PA15 LINE L1 -7 6158 6093 21 36 0 0 chr4 36318607 36318635 -147970027 + AT_rich Low_complexity Low_complexity 1 28 0 2225 107 0 3 chr4 36318776 36319084 -147969578 - AluSg SINE Alu -3 307 1 969 251 0 9 chr4 36319476 36319699 -147968963 - MER58A DNA MER1_type 0 224 4 226 350 21 7 chr4 36320599 36320739 -147967923 - L2 LINE L2 -957 2357 2216 21 36 0 0 chr4 36321925 36321953 -147966709 + AT_rich Low_complexity Low_complexity 1 28 0 1265 253 94 25 chr4 36322119 36322649 -147966013 - MLT1E2 LTR MaLR 0 626 90 340 258 73 24 chr4 36322687 36322811 -147965851 + MIR SINE MIR 25 154 -108 1634 39 0 0 chr4 36323626 36323832 -147964830 - L1PA5 LINE L1 -1606 4540 4335 7228 41 3 3 chr4 36323837 36325447 -147963215 + L1PA5 LINE L1 4542 6151 -3 329 326 69 50 chr4 36328758 36329019 -147959643 - L1M4 LINE L1 -1313 4833 4568 356 319 108 54 chr4 36329160 36330282 -147958380 - L1M4 LINE L1 -2368 3778 2570 215 247 222 12 chr4 36330385 36330466 -147958196 + L2 LINE L2 2414 2511 -803 663 287 93 0 chr4 36330587 36330803 -147957859 - L2 LINE L2 -671 2643 2408 337 313 6 30 chr4 36331240 36331406 -147957256 - L1MC4a LINE L1 -1878 5930 5769 307 228 65 11 chr4 36331482 36331574 -147957088 - L1M4 LINE L1 -3859 2287 2191 3324 187 18 0 chr4 36331616 36332216 -147956446 + Tigger1 DNA MER2_type 1 611 -1807 * 9686 126 19 37 chr4 36332184 36332414 -147956248 + Tigger1 DNA MER2_type 796 1029 -1389 1920 112 38 0 chr4 36332414 36332704 -147955958 + AluSp SINE Alu 9 308 0 9686 126 19 37 chr4 36332704 36334125 -147954537 + Tigger1 DNA MER2_type 1029 2418 0 869 235 26 33 chr4 36334704 36335010 -147953652 + LTR37A LTR ERV1 55 358 -68 2646 207 74 16 chr4 36335010 36335150 -147953512 - L1MA9 LINE L1 -4 6308 6177 345 47 0 0 chr4 36335150 36335193 -147953469 + (TG)n Simple_repeat Simple_repeat 2 44 0 2646 207 74 16 chr4 36335193 36335718 -147952944 - L1MA9 LINE L1 -135 6177 5605 243 320 0 27 chr4 36336184 36336259 -147952403 - MIR SINE MIR -142 120 48 22 0 0 0 chr4 36336270 36336292 -147952370 + AT_rich Low_complexity Low_complexity 1 22 0 200 288 0 0 chr4 36337596 36337662 -147951000 + T-rich Low_complexity Low_complexity 1 66 0 22 0 0 0 chr4 36338292 36338314 -147950348 + AT_rich Low_complexity Low_complexity 1 22 0 591 13 27 0 chr4 36338594 36338669 -147949993 - L1PA4 LINE L1 -2 6153 6077 3523 155 41 36 chr4 36340605 36341386 -147947276 + LTR1 LTR ERV1 1 785 0 466 239 92 54 chr4 36341399 36341583 -147947079 + MIR SINE MIR 72 262 0 1896 168 0 0 chr4 36342227 36342537 -147946125 + AluSx SINE Alu 1 310 -2 2213 119 27 3 chr4 36343205 36343541 -147945121 - THE1A LTR MaLR 0 355 12 11227 97 9 15 chr4 36343541 36345121 -147943541 - THE1A-int LTR MaLR -9 1571 1 1460 135 9 0 chr4 36345121 36345350 -147943312 - THE1A LTR MaLR 0 355 125 768 119 24 24 chr4 36345467 36345593 -147943069 - THE1A LTR MaLR -249 126 1 315 0 0 0 chr4 36346182 36346217 -147942445 + (CA)n Simple_repeat Simple_repeat 2 36 0 390 260 65 55 chr4 36346279 36346479 -147942183 + L2 LINE L2 3112 3313 0 232 300 14 0 chr4 36346481 36346551 -147942111 + MIR SINE MIR 171 241 -21 189 313 109 0 chr4 36348389 36348453 -147940209 + L2 LINE L2 3202 3272 0 291 373 46 14 chr4 36348700 36348917 -147939745 - MIR SINE MIR -28 234 11 240 277 53 21 chr4 36349363 36349457 -147939205 + L2 LINE L2 2158 2254 -1060 471 290 39 120 chr4 36349718 36350052 -147938610 + MLT1J LTR MaLR 37 343 -168 427 321 37 23 chr4 36350064 36350279 -147938383 + L2 LINE L2 3088 3305 -8 21 71 0 0 chr4 36351208 36351250 -147937412 + AT_rich Low_complexity Low_complexity 1 42 0 235 338 31 59 chr4 36351558 36351780 -147936882 - L2 LINE L2 0 3313 3098 1924 154 39 20 chr4 36351781 36352137 -147936525 + THE1C LTR MaLR 13 375 0 438 261 64 25 chr4 36352143 36352300 -147936362 - L2 LINE L2 -278 3035 2873 327 232 27 18 chr4 36353667 36353779 -147934883 + L1MC/D LINE L1 4532 4644 -1502 1441 221 0 0 chr4 36353807 36354078 -147934584 - MLT2C1 LTR ERVL -126 271 1 26 30 0 0 chr4 36354376 36354409 -147934253 + AT_rich Low_complexity Low_complexity 1 33 0 245 271 80 33 chr4 36355444 36355595 -147933067 + L1MC/D LINE L1 5595 5752 -2056 758 244 176 0 chr4 36355792 36356030 -147932632 + L1M4 LINE L1 4562 4841 -1305 182 175 0 18 chr4 36356054 36356111 -147932551 + (TTAA)n Simple_repeat Simple_repeat 3 58 0 468 256 56 0 chr4 36356112 36356237 -147932425 + L1M4 LINE L1 4847 4978 -1168 24 0 0 0 chr4 36356407 36356431 -147932231 + AT_rich Low_complexity Low_complexity 1 24 0 198 370 49 25 chr4 36357995 36358238 -147930424 + L2 LINE L2 1129 1377 -1937 430 333 44 15 chr4 36358244 36358448 -147930214 - MIR SINE MIR -3 259 50 1765 135 97 26 chr4 36358625 36358965 -147929697 + THE1B LTR MaLR 1 364 0 299 326 157 30 chr4 36359023 36359084 -147929578 + L2 LINE L2 1610 1662 -1652 186 103 0 0 chr4 36359084 36359113 -147929549 + (TAA)n Simple_repeat Simple_repeat 2 30 0 299 326 157 30 chr4 36359113 36359377 -147929285 + L2 LINE L2 1662 1996 -1318 993 257 85 101 chr4 36359377 36359980 -147928682 - MLT1E LTR MaLR 0 593 1 299 326 157 30 chr4 36359980 36360049 -147928613 + L2 LINE L2 1996 2055 -1259 280 305 73 49 chr4 36360132 36360296 -147928366 + L2 LINE L2 2214 2381 -933 250 279 25 51 chr4 36360838 36360917 -147927745 + L2 LINE L2 2932 3008 -264 204 158 0 0 chr4 36361594 36361632 -147927030 + (TA)n Simple_repeat Simple_repeat 2 39 0 214 182 78 0 chr4 36361700 36361777 -147926885 + (TA)n Simple_repeat Simple_repeat 1 83 0 21 0 0 0 chr4 36361877 36361898 -147926764 + AT_rich Low_complexity Low_complexity 1 21 0 973 219 15 5 chr4 36362184 36362389 -147926273 + MER3 DNA MER1_type 1 207 -2 863 253 20 0 chr4 36362605 36362803 -147925859 + MER58A DNA MER1_type 20 221 -3 201 349 16 32 chr4 36362886 36363012 -147925650 - L2 LINE L2 -182 3090 2967 191 189 19 0 chr4 36363082 36363135 -147925527 + (TA)n Simple_repeat Simple_repeat 2 55 0 40 42 0 14 chr4 36363264 36363311 -147925351 + AT_rich Low_complexity Low_complexity 1 48 -23 215 39 19 58 chr4 36363311 36363363 -147925299 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 40 42 0 14 chr4 36363363 36363387 -147925275 + AT_rich Low_complexity Low_complexity 48 71 0 24 0 0 0 chr4 36363808 36363832 -147924830 + AT_rich Low_complexity Low_complexity 1 24 0 397 264 16 16 chr4 36365658 36365783 -147922879 - MER103 DNA DNA -39 127 3 426 20 0 0 chr4 36366218 36366269 -147922393 + (TG)n Simple_repeat Simple_repeat 2 52 0 201 302 168 47 chr4 36367113 36367262 -147921400 + MIR SINE MIR 35 201 -61 1049 183 0 0 chr4 36367378 36367558 -147921104 - L1PB4 LINE L1 -13 6143 5964 200 189 0 0 chr4 36367572 36367609 -147921053 + CT-rich Low_complexity Low_complexity 4 40 0 25 31 0 0 chr4 36367646 36367678 -147920984 + AT_rich Low_complexity Low_complexity 1 32 0 2253 53 3 23 chr4 36368839 36369140 -147919522 + AluY SINE Alu 1 295 -16 22 35 0 0 chr4 36370158 36370187 -147918475 + AT_rich Low_complexity Low_complexity 1 29 0 218 28 0 56 chr4 36371165 36371201 -147917461 + (TTCC)n Simple_repeat Simple_repeat 3 36 0 1902 131 0 81 chr4 36371494 36371829 -147916833 + AluSx SINE Alu 2 309 -3 2096 147 11 22 chr4 36371843 36372211 -147916451 + THE1B LTR MaLR 1 364 0 21 57 0 0 chr4 36372433 36372468 -147916194 + AT_rich Low_complexity Low_complexity 1 35 0 231 189 0 0 chr4 36372549 36372602 -147916060 + (TA)n Simple_repeat Simple_repeat 2 54 0 2036 108 10 7 chr4 36372968 36373263 -147915399 + AluSq SINE Alu 1 296 -17 2406 30 39 23 chr4 36373395 36373700 -147914962 - AluY SINE Alu -1 310 1 180 158 0 0 chr4 36374470 36374508 -147914154 + (TG)n Simple_repeat Simple_repeat 2 39 0 21 57 0 0 chr4 36375201 36375236 -147913426 + AT_rich Low_complexity Low_complexity 1 35 0 28 48 0 0 chr4 36375883 36375925 -147912737 + AT_rich Low_complexity Low_complexity 1 42 0 183 234 21 0 chr4 36376134 36376181 -147912481 - L2 LINE L2 -221 3051 3004 635 332 43 38 chr4 36377066 36377461 -147911201 + LTR16B LTR ERVL 37 433 -31 26 30 0 0 chr4 36377735 36377768 -147910894 + AT_rich Low_complexity Low_complexity 1 33 0 224 214 0 0 chr4 36379952 36380008 -147908654 + (TAGA)n Simple_repeat Simple_repeat 3 58 0 484 277 89 31 chr4 36380447 36380662 -147908000 + MIR SINE MIR 4 225 -21 351 325 41 71 chr4 36382962 36383125 -147905537 + MIR3 SINE MIR 6 164 -44 1995 129 13 31 chr4 36383125 36383443 -147905219 - AluSx SINE Alu 0 312 1 351 325 41 71 chr4 36383443 36383476 -147905186 + MIR3 SINE MIR 164 196 -12 232 206 44 29 chr4 36384008 36384076 -147904586 + GA-rich Low_complexity Low_complexity 3 71 0 330 67 0 0 chr4 36384089 36384134 -147904528 + (GA)n Simple_repeat Simple_repeat 2 46 0 27 0 0 0 chr4 36384227 36384254 -147904408 + AT_rich Low_complexity Low_complexity 1 27 0 26 50 0 0 chr4 36384962 36385002 -147903660 + AT_rich Low_complexity Low_complexity 1 40 0 47 19 0 0 chr4 36385034 36385088 -147903574 + AT_rich Low_complexity Low_complexity 1 54 0 22 70 0 0 chr4 36386334 36386377 -147902285 + AT_rich Low_complexity Low_complexity 1 43 0 689 150 8 8 chr4 36386922 36387049 -147901613 - MER52A LTR ERV1 0 1755 1629 * 3499 208 163 34 chr4 36387047 36388045 -147900617 - MER52A LTR ERV1 -628 1127 1 380 138 0 25 chr4 36388613 36388693 -147899969 + (TCCC)n Simple_repeat Simple_repeat 2 79 0 750 81 24 8 chr4 36388694 36388818 -147899844 + (TTTC)n Simple_repeat Simple_repeat 4 129 0 787 170 18 118 chr4 36388818 36389225 -147899437 - AluJo SINE Alu 0 469 86 448 256 87 17 chr4 36389239 36389411 -147899251 + MLT1I LTR MaLR 226 409 0 3241 73 5 0 chr4 36389818 36390243 -147898419 - L1PA7 LINE L1 -11 6143 5717 387 320 50 23 chr4 36390644 36390863 -147897799 - HAL1 LINE L1 -1322 1185 961 535 353 83 9 chr4 36390937 36391274 -147897388 - HAL1 LINE L1 -1994 513 152 2390 88 0 0 chr4 36391420 36391725 -147896937 + AluY SINE Alu 3 307 -4 2068 131 3 3 chr4 36391741 36392047 -147896615 + AluSx SINE Alu 1 306 -6 288 205 71 94 chr4 36392047 36392174 -147896488 - L1MB8 LINE L1 -11 6167 6044 276 348 7 15 chr4 36392193 36392328 -147896334 + (TATG)n Simple_repeat Simple_repeat 2 135 0 252 0 0 0 chr4 36392508 36392536 -147896126 + (TG)n Simple_repeat Simple_repeat 1 28 0 357 226 0 49 chr4 36393289 36393391 -147895271 - L1MC4 LINE L1 -1339 6983 1996 198 224 0 0 chr4 36393391 36393440 -147895222 + (TA)n Simple_repeat Simple_repeat 2 50 0 21 71 0 0 chr4 36393857 36393899 -147894763 + AT_rich Low_complexity Low_complexity 1 42 0 209 328 75 52 chr4 36394839 36394973 -147893689 - L2 LINE L2 0 3272 3136 501 95 14 0 chr4 36395262 36395336 -147893326 + MADE1 DNA Mariner 1 75 -5 2214 112 0 0 chr4 36395472 36395768 -147892894 - AluSg SINE Alu -14 296 1 452 303 95 84 chr4 36395951 36396308 -147892354 + LTR67 LTR ERVL 146 506 -51 384 333 138 62 chr4 36397095 36397608 -147891054 - L2 LINE L2 -52 3261 2706 1899 332 57 20 chr4 36397643 36397795 -147890867 - L2 LINE L2 -1754 1560 1415 563 0 0 15 chr4 36397795 36397863 -147890799 + (TAAAA)n Simple_repeat Simple_repeat 1 67 0 1899 332 57 20 chr4 36397863 36398669 -147889993 - L2 LINE L2 -1899 1415 566 1920 176 78 24 chr4 36399327 36399737 -147888925 + MSTB1 LTR MaLR 1 432 0 1982 185 82 0 chr4 36400542 36400931 -147887731 - MSTA LTR MaLR 0 428 8 327 284 74 40 chr4 36401334 36401482 -147887180 + LTR16C LTR ERVL 85 237 -254 2158 197 36 24 chr4 36401849 36402346 -147886316 - MLT1D LTR MaLR 0 505 3 1307 146 27 0 chr4 36402497 36402717 -147885945 + AluJb SINE Alu 85 310 -2 647 173 17 11 chr4 36403083 36403262 -147885400 + (CA)n Simple_repeat Simple_repeat 1 180 0 1272 259 63 66 chr4 36404968 36405631 -147883031 + L1MC4 LINE L1 7112 7772 -270 291 85 0 0 chr4 36406088 36406135 -147882527 + (TTTTG)n Simple_repeat Simple_repeat 3 49 0 1962 106 9 44 chr4 36406751 36407072 -147881590 - AluSg SINE Alu 0 310 1 1976 169 46 33 chr4 36407220 36407753 -147880909 - MLT2A1 LTR ERVL -1 553 1 200 350 25 0 chr4 36407762 36407842 -147880820 + L2 LINE L2 2920 3001 -312 207 0 0 0 chr4 36408033 36408056 -147880606 + (T)n Simple_repeat Simple_repeat 1 23 0 408 341 22 39 chr4 36408839 36409018 -147879644 + MIR SINE MIR 80 255 -7 256 314 69 57 chr4 36410130 36410305 -147878357 - MIR SINE MIR -7 255 79 204 419 9 0 chr4 36410447 36410552 -147878110 - L2 LINE L2 -214 3058 2953 762 211 188 0 chr4 36412074 36412292 -147876370 + L1MC4 LINE L1 7415 7673 -369 233 272 26 9 chr4 36412751 36412865 -147875797 + T-rich Low_complexity Low_complexity 4 119 0 24 32 0 0 chr4 36413600 36413631 -147875031 + AT_rich Low_complexity Low_complexity 1 31 0 224 294 144 20 chr4 36413715 36413868 -147874794 - MIR SINE MIR 0 262 91 191 271 59 47 chr4 36414194 36414279 -147874383 + MIR SINE MIR 104 189 -73 22 103 0 0 chr4 36415097 36415175 -147873487 + AT_rich Low_complexity Low_complexity 1 78 0 248 316 13 0 chr4 36415994 36416070 -147872592 + MIR SINE MIR 180 256 -6 234 259 0 37 chr4 36417084 36417165 -147871497 + T-rich Low_complexity Low_complexity 2 79 0 375 23 0 0 chr4 36417431 36417475 -147871187 + (TG)n Simple_repeat Simple_repeat 1 44 0 180 0 0 0 chr4 36417476 36417496 -147871166 + (GA)n Simple_repeat Simple_repeat 1 20 0 395 248 92 34 chr4 36419416 36419556 -147869106 - MIR SINE MIR -63 145 19 374 289 160 13 chr4 36419885 36420041 -147868621 - MIR SINE MIR -13 249 71 2351 159 27 9 chr4 36420191 36420606 -147868056 - MSTA LTR MaLR -6 422 1 23 54 0 0 chr4 36421219 36421256 -147867406 + AT_rich Low_complexity Low_complexity 1 37 0 210 231 0 0 chr4 36421341 36421392 -147867270 + polypurine Low_complexity Low_complexity 1 51 0 225 0 0 0 chr4 36421825 36421850 -147866812 + (CA)n Simple_repeat Simple_repeat 2 26 0 1945 137 52 25 chr4 36421891 36422256 -147866406 + THE1C LTR MaLR 1 375 0 960 128 44 33 chr4 36422258 36422438 -147866224 + THE1C-int LTR MaLR 3 184 -1396 1963 187 30 32 chr4 36422658 36423091 -147865571 - MSTB1 LTR MaLR 0 432 1 360 0 0 0 chr4 36423863 36423903 -147864759 + (TG)n Simple_repeat Simple_repeat 2 41 0 222 239 15 0 chr4 36423903 36423970 -147864692 + (TA)n Simple_repeat Simple_repeat 2 69 0 24 32 0 0 chr4 36425353 36425384 -147863278 + AT_rich Low_complexity Low_complexity 1 31 0 3324 130 23 38 chr4 36425423 36425952 -147862710 + MER1A DNA MER1_type 1 521 -8 2231 98 0 13 chr4 36426247 36426553 -147862109 - AluSc SINE Alu -7 302 1 186 301 43 32 chr4 36426584 36426677 -147861985 - L2 LINE L2 -535 2779 2686 202 200 0 0 chr4 36427197 36427232 -147861430 - MIR SINE MIR -10 252 218 198 143 0 0 chr4 36427770 36427805 -147860857 + (GGA)n Simple_repeat Simple_repeat 2 36 0 1407 111 0 15 chr4 36628303 36628501 -147660161 - AluSp SINE Alu -118 195 1 1988 224 99 17 chr4 36628501 36628663 -147659999 - L1MC4a LINE L1 -224 7584 7437 1847 141 5 83 chr4 36628663 36629038 -147659624 + MER7A DNA MER2_type 2 345 -1 1988 224 99 17 chr4 36629038 36629546 -147659116 - L1MC4a LINE L1 -371 7437 6874 1230 279 78 25 chr4 36630116 36630632 -147658030 - MLT1H LTR MaLR 0 549 7 267 103 0 0 chr4 36630955 36630994 -147657668 + (TA)n Simple_repeat Simple_repeat 1 39 0 925 137 29 0 chr4 36631321 36631460 -147657202 - MER30 DNA MER1_type -1 229 87 3081 242 60 9 chr4 36632385 36633370 -147655292 - L1M4 LINE L1 -1114 5032 3998 474 200 11 21 chr4 36634638 36634733 -147653929 + L1PBa LINE L1 1547 1640 -5223 * 5440 175 27 19 chr4 36634711 36635823 -147652839 + L1PBb LINE L1 15 1135 -5069 2241 86 7 0 chr4 36636144 36636445 -147652217 + AluY SINE Alu 1 303 -8 252 103 0 0 chr4 36636560 36636599 -147652063 - MADE1 DNA Mariner -41 39 1 22 35 0 0 chr4 36636764 36636793 -147651869 + AT_rich Low_complexity Low_complexity 1 29 0 1365 182 26 4 chr4 36637005 36637274 -147651388 - LTR22 LTR ERVK -4 505 231 8764 89 11 2 chr4 36637375 36638553 -147650109 + HERVL LTR ERVL 1551 2738 -2916 2160 176 33 81 chr4 36638788 36638945 -147649717 - L1MA10 LINE L1 -1 6333 6170 2702 22 0 10 chr4 36638945 36639258 -147649404 - AluY SINE Alu -1 310 1 2160 176 33 81 chr4 36639258 36639645 -147649017 - L1MA10 LINE L1 -164 6170 5815 234 98 87 65 chr4 36639698 36639790 -147648872 + (TTTA)n Simple_repeat Simple_repeat 3 96 0 249 273 0 0 chr4 36639793 36639859 -147648803 + MER63 DNA MER1_type 684 749 -311 492 72 0 0 chr4 36640086 36640155 -147648507 + L1P LINE L1 5318 5386 -788 * 3511 245 22 10 chr4 36640150 36641219 -147647443 - L1M4 LINE L1 -2360 3786 2705 2541 84 14 0 chr4 36641356 36641701 -147646961 - HERVL-A2 LTR ERVL -5304 350 1 394 91 0 0 chr4 36641701 36641756 -147646906 - MLT2A2 LTR ERVL 0 453 399 315 190 0 100 chr4 36641787 36641887 -147646775 - L1MC4 LINE L1 -1339 6703 6614 348 103 0 0 chr4 36641895 36641953 -147646709 + (TA)n Simple_repeat Simple_repeat 2 59 0 1490 62 54 120 chr4 36641953 36642229 -147646433 - MLT2A2 LTR ERVL -195 258 1 789 209 37 28 chr4 36642229 36642444 -147646218 + THE1C LTR MaLR 107 323 -52 244 286 22 44 chr4 36642568 36642664 -147645998 - MIR SINE MIR -105 103 18 308 256 26 43 chr4 36644667 36644784 -147643878 - Charlie8 DNA MER1_type -2200 217 103 1454 334 111 25 chr4 36644887 36646233 -147642429 + L2 LINE L2 1845 3312 -1 204 294 24 24 chr4 36647499 36647584 -147641078 - MIR SINE MIR -21 241 157 1849 163 38 16 chr4 36648489 36648857 -147639805 - MER6 DNA MER2_type 0 865 230 4019 201 34 11 chr4 36648993 36650107 -147638555 + L1P4 LINE L1 4352 5501 -665 757 136 0 0 chr4 36650110 36650220 -147638442 + Ricksha DNA DNA 333 442 -812 764 185 0 15 chr4 36650429 36650564 -147638098 + FLAM_C SINE Alu 1 133 0 326 217 103 98 chr4 36650828 36651215 -147637447 + L1ME4a LINE L1 5693 6081 -40 1638 112 13 70 chr4 36651251 36651563 -147637099 - L1MA6 LINE L1 0 6300 6007 1759 156 55 30 chr4 36651899 36652265 -147636397 - THE1C LTR MaLR 0 375 1 2196 116 0 3 chr4 36652290 36652593 -147636069 - AluSx SINE Alu -10 302 1 2197 100 0 0 chr4 36653112 36653475 -147635187 - AluSc SINE Alu 0 363 1 1219 203 24 117 chr4 36653704 36654035 -147634627 - MLT1B LTR MaLR -10 380 94 2136 122 3 13 chr4 36654035 36654347 -147634315 + AluSc SINE Alu 1 309 0 1219 203 24 117 chr4 36654347 36654434 -147634228 - MLT1B LTR MaLR -296 94 1 224 288 17 0 chr4 36654605 36654664 -147633998 - L2 LINE L2 0 3272 3213 22 56 0 0 chr4 36655244 36655280 -147633382 + AT_rich Low_complexity Low_complexity 1 36 0 329 217 22 16 chr4 36656023 36656150 -147632512 - L1MEc LINE L1 -3127 3088 2962 666 231 55 48 chr4 36656155 36656495 -147632167 - L1MEc LINE L1 -3766 2461 2146 230 245 75 19 chr4 36656628 36656734 -147631928 - L1M4 LINE L1 -3034 3112 3001 2312 264 48 18 chr4 36656830 36657859 -147630803 + L1M3 LINE L1 4684 5745 -438 1721 139 102 24 chr4 36657859 36658191 -147630471 + MSTA LTR MaLR 1 358 -70 2462 243 42 9 chr4 36658292 36659261 -147629401 + L1M2 LINE L1 2540 3489 -4076 2097 111 3 7 chr4 36659363 36659651 -147629011 + AluSc SINE Alu 1 287 -22 1007 117 0 0 chr4 36659754 36659891 -147628771 - AluSg SINE Alu -173 137 1 503 16 16 0 chr4 36660120 36660184 -147628478 + (TG)n Simple_repeat Simple_repeat 2 66 0 253 325 12 0 chr4 36660855 36660938 -147627724 + MIR3 SINE MIR 124 207 -1 22 35 0 0 chr4 36661115 36661144 -147627518 + AT_rich Low_complexity Low_complexity 1 29 0 945 268 43 31 chr4 36661607 36661958 -147626704 + HAL1 LINE L1 1347 1701 -806 2117 136 0 0 chr4 36662442 36662744 -147625918 - AluJb SINE Alu -10 302 1 2337 97 0 6 chr4 36663956 36664267 -147624395 - AluSp SINE Alu -4 309 1 200 213 21 0 chr4 36664777 36664824 -147623838 + GA-rich Low_complexity Low_complexity 2 49 0 690 262 87 34 chr4 36664863 36665117 -147623545 + MIR SINE MIR 3 261 -1 1980 188 3 6 chr4 36665298 36665644 -147623018 + MLT1A1 LTR MaLR 21 365 0 29 0 0 0 chr4 36666124 36666153 -147622509 + AT_rich Low_complexity Low_complexity 1 29 0 205 400 136 7 chr4 36666428 36666583 -147622079 - L2 LINE L2 -3 3269 3095 908 234 34 79 chr4 36666670 36667025 -147621637 + MLT1C LTR MaLR 1 339 -128 232 262 33 0 chr4 36667141 36667202 -147621460 + LTR16A LTR ERVL 383 445 -5 4691 81 11 0 chr4 36668367 36669006 -147619656 + L1PA13 LINE L1 5517 6162 -1 374 299 14 54 chr4 36670285 36670563 -147618099 - L1MEc LINE L1 -4729 1667 1401 393 284 88 15 chr4 36670633 36670837 -147617825 + L1ME LINE L1 5417 5635 -531 367 275 7 49 chr4 36670900 36671042 -147617620 + L1ME LINE L1 5633 5768 -394 1705 39 0 14 chr4 36671311 36671518 -147617144 - AluY SINE Alu -16 295 92 23 68 0 0 chr4 36672686 36672730 -147615932 + AT_rich Low_complexity Low_complexity 1 44 0 2013 83 12 0 chr4 36673237 36673489 -147615173 - AluSx SINE Alu -54 258 4 3578 129 81 24 chr4 36673492 36674499 -147614163 - L1MA5A LINE L1 -345 5952 4897 1849 148 0 14 chr4 36675265 36675555 -147613107 - AluSx SINE Alu -26 286 1 364 319 53 0 chr4 36675556 36675669 -147612993 - 7SLRNA srpRNA srpRNA -161 159 41 294 154 77 15 chr4 36675964 36676029 -147612633 - L1MA9 LINE L1 0 6312 6244 24 53 0 0 chr4 36677087 36677125 -147611537 + AT_rich Low_complexity Low_complexity 1 38 0 503 265 8 43 chr4 36677977 36678122 -147610540 + MIR SINE MIR 20 158 -61 300 53 0 0 chr4 36678715 36678753 -147609909 + (TC)n Simple_repeat Simple_repeat 2 39 0 383 0 21 0 chr4 36678943 36678990 -147609672 + (GA)n Simple_repeat Simple_repeat 1 48 0 401 307 34 39 chr4 36679105 36679310 -147609352 - MIR3 SINE MIR -2 206 3 5025 61 7 6 chr4 36679437 36680206 -147608456 + L1PA6 LINE L1 5164 5931 -223 4972 119 14 37 chr4 36680887 36681744 -147606918 + MER4D LTR ERV1 58 894 -9 385 79 11 0 chr4 36682052 36682118 -147606544 - L1M4 LINE L1 -638 5525 5456 24 0 0 0 chr4 36682549 36682573 -147606089 + AT_rich Low_complexity Low_complexity 1 24 0 312 281 73 21 chr4 36683314 36683410 -147605252 + L2 LINE L2 3208 3308 -5 293 227 21 41 chr4 36684573 36684670 -147603992 - MIR SINE MIR -46 216 122 219 151 27 5 chr4 36685374 36685451 -147603211 + L2 LINE L2 3191 3308 -5 366 345 52 11 chr4 36685465 36685639 -147603023 - MIR SINE MIR -61 201 21 193 80 0 0 chr4 36686995 36687020 -147601642 - L2 LINE L2 -20 3293 3269 497 296 19 51 chr4 36687545 36687761 -147600901 + MIR SINE MIR 2 210 -52 242 284 27 14 chr4 36688456 36688530 -147600132 - LTR67 LTR ERVL -383 174 100 267 151 159 103 chr4 36688671 36688797 -147599865 - MLT1F LTR MaLR 0 542 410 1925 159 207 19 chr4 36689322 36689862 -147598800 + LTR8A LTR ERV1 1 642 -85 25 0 0 0 chr4 36690432 36690457 -147598205 + AT_rich Low_complexity Low_complexity 1 25 0 435 270 84 47 chr4 36690891 36691165 -147597497 - LTR16A1 LTR ERVL -85 372 89 184 179 0 36 chr4 36692572 36692628 -147596034 + CT-rich Low_complexity Low_complexity 5 58 0 207 0 0 0 chr4 36692788 36692811 -147595851 + (A)n Simple_repeat Simple_repeat 1 23 0 673 257 50 30 chr4 36693321 36693756 -147594906 - MLT1H LTR MaLR 0 549 13 2006 169 32 26 chr4 36694060 36694091 -147594571 + L1 LINE L1 3930 3959 -2187 2104 127 0 17 chr4 36694091 36694390 -147594272 + AluSx SINE Alu 1 294 -18 2006 169 32 26 chr4 36694390 36694820 -147593842 + L1 LINE L1 3959 4394 -1752 618 180 7 156 chr4 36694922 36695199 -147593463 - LTR34 LTR ERV1 -234 465 136 421 191 19 19 chr4 36695283 36695388 -147593274 - MER4A LTR ERV1 -559 105 1 677 309 71 30 chr4 36695492 36695587 -147593075 - L2 LINE L2 -145 3168 3078 3996 119 26 3 chr4 36695587 36696208 -147592454 + MER41B LTR ERV1 1 635 0 677 309 71 30 chr4 36696208 36696558 -147592104 - L2 LINE L2 -235 3078 2707 2090 127 14 0 chr4 36696897 36697188 -147591474 - AluSx SINE Alu -17 295 1 252 225 58 17 chr4 36697319 36697439 -147591223 + (TA)n Simple_repeat Simple_repeat 2 126 0 214 321 0 0 chr4 36697698 36697754 -147590908 + MIR SINE MIR 55 110 -152 248 284 149 14 chr4 36698617 36698758 -147589904 + L2 LINE L2 3108 3267 -5 188 264 161 11 chr4 36699611 36699698 -147588964 + MIR SINE MIR 12 111 -151 259 253 0 0 chr4 36700667 36700742 -147587920 - MER103 DNA DNA -81 85 11 2100 124 0 0 chr4 36700895 36701209 -147587453 - AluSx SINE Alu 0 314 1 762 305 60 0 chr4 36701493 36701726 -147586936 - MIR SINE MIR -15 247 1 563 279 61 6 chr4 36701733 36701898 -147586764 - L2 LINE L2 -241 3072 2899 201 133 0 0 chr4 36702715 36702745 -147585917 + (CATA)n Simple_repeat Simple_repeat 3 32 0 308 314 146 22 chr4 36702842 36702979 -147585683 - L2 LINE L2 0 3272 3119 1541 205 30 19 chr4 36703920 36704281 -147584381 + MLT1A1 LTR MaLR 1 365 0 244 244 47 35 chr4 36704484 36704570 -147584092 - MLT1K LTR MaLR -320 268 182 1686 182 11 0 chr4 36705839 36706125 -147582537 + AluJo SINE Alu 1 289 -23 209 215 9 56 chr4 36706912 36707019 -147581643 + (TTTAA)n Simple_repeat Simple_repeat 4 105 0 571 286 98 10 chr4 36707228 36707431 -147581231 + MIR SINE MIR 29 249 -13 319 37 19 37 chr4 36707477 36707531 -147581131 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 2395 295 51 34 chr4 36707885 36709255 -147579407 + L1PBa LINE L1 7 1400 -5463 313 259 157 42 chr4 36710228 36710514 -147578148 - L1ME4a LINE L1 -38 6083 5765 212 338 0 0 chr4 36710519 36710593 -147578069 + (TAA)n Simple_repeat Simple_repeat 1 74 0 262 316 58 22 chr4 36710635 36710774 -147577888 - MIR SINE MIR -23 239 96 346 328 18 35 chr4 36710775 36710946 -147577716 - MER5A DNA MER1_type -11 178 11 395 313 14 14 chr4 36710796 36710943 -147577719 + MER5B DNA MER1_type 31 177 -1 751 260 35 8 chr4 36711094 36711352 -147577310 - MER93a LTR ERV1 -13 389 125 195 42 0 0 chr4 36712733 36712757 -147575905 + (CA)n Simple_repeat Simple_repeat 2 25 0 216 0 0 0 chr4 36712966 36712990 -147575672 + (A)n Simple_repeat Simple_repeat 1 24 0 1941 145 13 32 chr4 36713579 36713673 -147574989 + L1MB1 LINE L1 5800 5894 -274 692 163 32 8 chr4 36713673 36713796 -147574866 + FLAM_C SINE Alu 1 126 -7 1941 145 13 32 chr4 36713796 36714074 -147574588 + L1MB1 LINE L1 5894 6165 -3 260 373 45 70 chr4 36714348 36714592 -147574070 - L2 LINE L2 -2 3270 3033 386 259 76 70 chr4 36715093 36715278 -147573384 + MER5A DNA MER1_type 1 186 -3 576 229 21 42 chr4 36715288 36715432 -147573230 + MER5B DNA MER1_type 36 176 -2 409 329 161 0 chr4 36715442 36715597 -147573065 - MER5A DNA MER1_type 0 189 10 205 162 0 0 chr4 36716073 36716110 -147572552 + (CA)n Simple_repeat Simple_repeat 1 37 0 1031 180 19 0 chr4 36716118 36716324 -147572338 + MLT2C2 LTR ERVL 1 210 -254 14303 83 2 1 chr4 36716425 36718506 -147570156 - L1P LINE L1 -1385 4761 2679 243 0 0 0 chr4 36719711 36719738 -147568924 + (T)n Simple_repeat Simple_repeat 1 27 0 195 42 0 0 chr4 36719945 36719969 -147568693 + (TG)n Simple_repeat Simple_repeat 2 25 0 25 31 0 0 chr4 36720464 36720496 -147568166 + AT_rich Low_complexity Low_complexity 1 32 0 32 26 0 0 chr4 36720851 36720890 -147567772 + AT_rich Low_complexity Low_complexity 1 39 0 462 315 35 7 chr4 36722302 36722445 -147566217 + MIR SINE MIR 2 148 -114 2011 188 29 11 chr4 36722450 36722896 -147565766 + L1MA4 LINE L1 5845 6298 -2 278 187 65 19 chr4 36724304 36724411 -147564251 + (TAGA)n Simple_repeat Simple_repeat 1 112 0 185 0 40 0 chr4 36725533 36725558 -147563104 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 1344 103 33 12 chr4 36726012 36726255 -147562407 - L1 LINE L1 -1338 4808 4561 216 278 28 28 chr4 36726801 36726909 -147561753 + GA-rich Low_complexity Low_complexity 1 108 0 630 245 20 7 chr4 36728074 36728221 -147560441 + MER58B DNA MER1_type 193 341 0 199 310 69 0 chr4 36728230 36728317 -147560345 - L2 LINE L2 -733 2581 2489 185 180 20 0 chr4 36728382 36728432 -147560230 + (TG)n Simple_repeat Simple_repeat 1 51 0 495 314 55 50 chr4 36730260 36730786 -147557876 + L1MC4a LINE L1 4736 5258 -888 627 287 23 11 chr4 36730792 36731053 -147557609 + L1MC4a LINE L1 5315 5578 -2230 1082 211 5 0 chr4 36731060 36731269 -147557393 + MER2 DNA MER2_type 1 210 -135 661 247 111 76 chr4 36731371 36732222 -147556440 + L1MC4a LINE L1 5583 6462 -1346 1992 157 16 0 chr4 36733666 36733971 -147554691 + AluSx SINE Alu 1 310 -2 375 217 68 75 chr4 36736448 36736609 -147552053 + LTR50 LTR ERVL 8 167 -628 2219 110 3 10 chr4 36736624 36736933 -147551729 + AluSx SINE Alu 1 307 -5 665 211 0 0 chr4 36737381 36737504 -147551158 - FLAM_C SINE Alu -18 125 3 686 281 111 47 chr4 36738025 36738512 -147550150 + LTR33A LTR ERVL 6 523 0 201 378 37 0 chr4 36738556 36738638 -147550024 + MIR SINE MIR 45 129 -79 545 300 77 14 chr4 36738857 36739077 -147549585 - MIR SINE MIR -25 237 4 214 167 0 0 chr4 36739604 36739640 -147549022 + (TATATG)n Simple_repeat Simple_repeat 1 36 0 370 271 30 8 chr4 36740304 36740437 -147548225 + L1MCc LINE L1 23 158 -6265 1000 261 32 19 chr4 36741290 36741604 -147547058 - LTR16A LTR ERVL 0 450 133 405 39 0 0 chr4 36741709 36741760 -147546902 + (TG)n Simple_repeat Simple_repeat 1 51 0 692 214 48 62 chr4 36741776 36742085 -147546577 + L1MC5 LINE L1 7634 7938 -23 1684 167 30 3 chr4 36742643 36742979 -147545683 + L1MA5 LINE L1 5948 6292 -8 23 54 0 0 chr4 36743136 36743173 -147545489 + AT_rich Low_complexity Low_complexity 1 37 0 396 0 0 0 chr4 36743561 36743605 -147545057 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 2003 102 4 0 chr4 36743614 36743880 -147544782 - AluSg SINE Alu -43 267 1 382 164 14 0 chr4 36745045 36745118 -147543544 + L1MB7 LINE L1 6055 6128 -56 307 375 69 17 chr4 36745939 36746171 -147542491 + MIR SINE MIR 2 245 -17 361 268 131 16 chr4 36746239 36746422 -147542240 + L1ME LINE L1 5574 5777 -344 1058 150 82 0 chr4 36746516 36746810 -147541852 + L1MB2 LINE L1 5163 5474 -709 279 0 0 0 chr4 36746812 36746843 -147541819 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 680 188 8 23 chr4 36746847 36746980 -147541682 + FLAM_C SINE Alu 1 131 -12 1842 168 9 0 chr4 36746990 36747329 -147541333 + L1MB2 LINE L1 5486 5827 -344 2542 38 0 0 chr4 36747330 36747623 -147541039 + AluY SINE Alu 1 293 -18 1067 95 0 7 chr4 36747723 36747870 -147540792 + AluY SINE Alu 153 298 -13 7322 149 44 18 chr4 36748115 36750087 -147538575 - L1MA8 LINE L1 -12 6279 4239 192 40 0 0 chr4 36750087 36750112 -147538550 + (TA)n Simple_repeat Simple_repeat 1 25 0 7322 149 44 18 chr4 36750112 36750597 -147538065 - L1MA8 LINE L1 -2052 4239 3768 215 200 0 29 chr4 36752049 36752119 -147536543 + (TAGA)n Simple_repeat Simple_repeat 3 70 0 611 279 9 22 chr4 36752806 36753028 -147535634 + MER57B LTR ERV1 50 268 -166 24 32 0 0 chr4 36753641 36753672 -147534990 + AT_rich Low_complexity Low_complexity 1 31 0 218 304 22 22 chr4 36754046 36754138 -147534524 - MIR SINE MIR -47 215 124 507 357 15 0 chr4 36755090 36755286 -147533376 + MIR SINE MIR 48 246 -16 1573 144 8 8 chr4 36755778 36756021 -147532641 + AluSx SINE Alu 1 243 -69 236 189 19 0 chr4 36758584 36758637 -147530025 + (CGGG)n Simple_repeat Simple_repeat 2 55 0 428 303 36 30 chr4 36758746 36758911 -147529751 - MIR SINE MIR -88 174 9 1058 269 49 59 chr4 36760531 36761022 -147527640 + L2 LINE L2 2815 3300 -13 257 268 24 0 chr4 36762444 36762526 -147526136 + CT-rich Low_complexity Low_complexity 1 84 0 387 0 0 0 chr4 36762637 36762680 -147525982 + (TG)n Simple_repeat Simple_repeat 1 43 0 670 273 52 5 chr4 36762862 36763056 -147525606 + MIR SINE MIR 60 262 0 299 306 0 12 chr4 36764314 36764399 -147524263 + CT-rich Low_complexity Low_complexity 3 86 0 356 349 53 13 chr4 36764448 36764600 -147524062 + MIR SINE MIR 93 250 -12 275 242 0 0 chr4 36764619 36764681 -147523981 - MER67D LTR ERV1 0 514 453 777 229 12 78 chr4 36764753 36764997 -147523665 - MER67D LTR ERV1 -197 317 90 272 329 19 25 chr4 36765991 36766152 -147522510 - L1M3c LINE L1 -5981 160 1 225 125 0 42 chr4 36766802 36766850 -147521812 + L1MC4 LINE L1 6658 6703 -1339 647 289 57 30 chr4 36766869 36767049 -147521613 - L1MC4a LINE L1 -813 5333 5682 2385 74 0 13 chr4 36767049 36767359 -147521303 - AluY SINE Alu -5 306 1 647 289 57 30 chr4 36767359 36768058 -147520604 - L1MC4a LINE L1 -463 5683 5004 230 292 0 0 chr4 36768058 36768123 -147520539 + MIR SINE MIR 129 193 -69 356 278 22 0 chr4 36768840 36768930 -147519732 + MER5A DNA MER1_type 9 100 -89 214 283 53 80 chr4 36769228 36769341 -147519321 + L2 LINE L2 3204 3313 0 987 153 33 0 chr4 36769582 36769765 -147518897 - L1MB3 LINE L1 0 6183 5995 5671 58 25 37 chr4 36769765 36771114 -147517548 + SVA Other Other 1 1166 -220 738 237 138 22 chr4 36772210 36772434 -147516228 + MIR SINE MIR 9 258 -4 730 275 92 61 chr4 36772813 36773206 -147515456 - MLT1K LTR MaLR -19 569 165 6989 50 29 0 chr4 36773663 36774658 -147514004 - L1PA4 LINE L1 -4 6151 5151 195 42 0 0 chr4 36774760 36774784 -147513878 + (CA)n Simple_repeat Simple_repeat 1 24 0 1764 145 9 69 chr4 36776137 36776469 -147512193 + AluSx SINE Alu 1 312 0 964 192 145 41 chr4 36777299 36777664 -147510998 + LTR37A LTR ERV1 1 403 -23 2393 109 0 0 chr4 36777664 36777976 -147510686 - AluSx SINE Alu 0 312 1 2279 117 0 0 chr4 36777987 36778296 -147510366 - AluSx SINE Alu -3 309 1 343 360 18 6 chr4 36779341 36779505 -147509157 + LTR67 LTR ERVL 45 210 -347 2204 110 0 10 chr4 36779568 36779868 -147508794 + AluSq SINE Alu 2 298 -15 733 215 135 33 chr4 36779915 36780023 -147508639 - HsTC2 DNA Tc2 0 1898 1802 1856 168 9 25 chr4 36780023 36780339 -147508323 - AluJo SINE Alu -1 311 1 733 215 135 33 chr4 36780339 36780629 -147508033 - HsTC2 DNA Tc2 -96 1802 1282 290 219 0 31 chr4 36780628 36780692 -147507970 - HsTC2 DNA Tc2 -1757 141 80 * 904 245 103 57 chr4 36781383 36781925 -147506737 - MLT1L LTR MaLR -7 608 42 228 311 14 0 chr4 36782086 36782160 -147506502 + L1MEd LINE L1 550 624 -5495 369 0 0 0 chr4 36782187 36782228 -147506434 + (CA)n Simple_repeat Simple_repeat 2 42 0 312 70 0 0 chr4 36782275 36782318 -147506344 + (CATA)n Simple_repeat Simple_repeat 2 44 0 1203 140 52 22 chr4 36782391 36782662 -147506000 + L1MA5A LINE L1 6018 6296 -1 230 268 32 89 chr4 36782746 36782992 -147505670 + L1MEd LINE L1 788 1019 -5100 631 289 98 68 chr4 36783056 36783631 -147505031 - L2 LINE L2 -73 3240 2661 23 33 0 0 chr4 36784045 36784075 -147504587 + AT_rich Low_complexity Low_complexity 1 30 0 366 281 131 20 chr4 36784292 36784491 -147504171 - L1ME3A LINE L1 -264 5906 5686 372 291 42 13 chr4 36784539 36784776 -147503886 - L1ME3A LINE L1 -580 5582 5339 234 180 0 0 chr4 36784836 36784913 -147503749 + A-rich Low_complexity Low_complexity 1 77 0 2174 138 31 17 chr4 36785030 36785385 -147503277 - THE1B LTR MaLR -4 360 1 464 328 97 22 chr4 36785419 36785859 -147502803 - L1ME3A LINE L1 -1039 5107 4515 378 291 54 41 chr4 36786002 36786297 -147502365 - L1ME3A LINE L1 -1983 4163 3865 1612 91 0 0 chr4 36786364 36786572 -147502090 + AluY SINE Alu 1 208 -103 4357 99 3 2 chr4 36787219 36787847 -147500815 - L1PB2 LINE L1 0 6151 5523 250 331 95 34 chr4 36788013 36788161 -147500501 - MIR3 SINE MIR -50 158 2 412 270 98 43 chr4 36789785 36789948 -147498714 - L2 LINE L2 0 3313 3142 255 253 0 72 chr4 36790037 36790120 -147498542 + L2 LINE L2 3196 3272 0 963 216 9 5 chr4 36793102 36793324 -147495338 + L1PA16 LINE L1 5944 6166 0 445 337 83 0 chr4 36793441 36793622 -147495040 + LTR33 LTR ERVL 2 197 -324 370 225 99 28 chr4 36793681 36793863 -147494799 + LTR33 LTR ERVL 327 521 0 285 357 32 22 chr4 36793909 36794094 -147494568 - MIR SINE MIR -54 208 19 310 311 161 22 chr4 36795400 36795580 -147493082 + L2 LINE L2 2428 2632 -682 1719 192 11 50 chr4 36795588 36795968 -147492694 - MLT1A1 LTR MaLR 0 365 1 3245 153 20 77 chr4 36796231 36796963 -147491699 - LTR8 LTR ERV1 0 691 1 1176 235 73 55 chr4 36797108 36797584 -147491078 + MLT1H LTR MaLR 62 546 -3 204 300 100 0 chr4 36797628 36797688 -147490974 - L2 LINE L2 -71 3201 3136 351 265 87 94 chr4 36797736 36798128 -147490534 - L2 LINE L2 -754 2560 2172 192 77 0 0 chr4 36800145 36800171 -147488491 + (T)n Simple_repeat Simple_repeat 1 26 0 198 287 57 82 chr4 36800201 36800323 -147488339 - L2 LINE L2 -15 3257 3139 271 371 48 30 chr4 36802009 36802176 -147486486 + L2 LINE L2 3041 3210 -62 413 218 129 0 chr4 36802211 36802312 -147486350 + MER45 DNA AcHobo 2 115 -63 256 235 0 0 chr4 36802443 36802494 -147486168 + MER45 DNA AcHobo 1531 1581 0 501 265 74 6 chr4 36802558 36802720 -147485942 + MIR SINE MIR 51 223 -39 1222 197 46 21 chr4 36802735 36803060 -147485602 + L1MA7 LINE L1 5866 6198 -93 272 242 16 0 chr4 36803395 36803457 -147485205 + (TCTG)n Simple_repeat Simple_repeat 4 66 0 417 54 0 0 chr4 36803752 36803808 -147484854 + (GA)n Simple_repeat Simple_repeat 1 56 0 1004 211 57 8 chr4 36804181 36804446 -147484216 + MER33 DNA MER1_type 1 278 -46 797 61 18 0 chr4 36804547 36804661 -147484001 + L1P1 LINE L1 1 116 -6030 * 33752 35 0 0 chr4 36804643 36809068 -147479594 + L1P1 LINE L1 1094 5517 -638 478 306 46 65 chr4 36809213 36809536 -147479126 + L2 LINE L2 2997 3313 0 183 333 25 25 chr4 36809568 36809649 -147479013 - MER5A DNA MER1_type -26 163 83 284 328 15 45 chr4 36809788 36809925 -147478737 + MER5B DNA MER1_type 36 179 -10 561 321 100 6 chr4 36810066 36810405 -147478257 - MLT1L LTR MaLR -26 589 219 254 28 0 28 chr4 36810758 36810794 -147477868 + (TG)n Simple_repeat Simple_repeat 2 36 0 2133 127 3 22 chr4 36811047 36811363 -147477299 + AluSx SINE Alu 1 310 -2 1681 138 190 11 chr4 36811504 36811867 -147476795 + MSTA LTR MaLR 1 428 0 3577 89 47 0 chr4 36814116 36814645 -147474017 - MER41A LTR ERV1 0 554 1 332 359 87 21 chr4 36815059 36815346 -147473316 + L2 LINE L2 2656 2961 -353 186 322 67 94 chr4 36815441 36815621 -147473041 + L2 LINE L2 3090 3264 -8 23 0 0 0 chr4 36815674 36815697 -147472965 + AT_rich Low_complexity Low_complexity 1 23 0 316 93 0 173 chr4 36815724 36815799 -147472863 - Charlie5 DNA MER1_type -28 2584 2523 372 199 286 19 chr4 36815878 36816084 -147472578 - L1MEd LINE L1 -5270 849 589 1827 137 31 53 chr4 36916220 36916541 -147372121 - THE1B LTR MaLR -49 315 2 637 266 13 25 chr4 36916541 36916699 -147371963 - MIR SINE MIR -103 159 4 288 323 50 0 chr4 36916951 36917050 -147371612 + L2 LINE L2 3202 3305 -8 263 276 11 11 chr4 36917799 36917886 -147370776 + MLT1K LTR MaLR 481 567 -21 273 315 54 0 chr4 36917907 36917999 -147370663 - L2 LINE L2 -10 3303 3207 279 247 56 0 chr4 36919160 36919249 -147369413 - Charlie1 DNA MER1_type -39 2722 2629 1992 156 0 0 chr4 36919252 36919541 -147369121 - AluSx SINE Alu -23 289 1 2030 119 0 28 chr4 36919802 36920122 -147368540 - AluSx SINE Alu -1 311 1 412 143 50 75 chr4 36921680 36921841 -147366821 + L1MC5 LINE L1 7547 7703 -258 1163 248 58 84 chr4 36922214 36922340 -147366322 - HAL1 LINE L1 -1 2506 2378 2314 222 86 3 chr4 36922340 36922907 -147365755 - MER90 LTR ERV1 0 614 1 1163 248 58 84 chr4 36922907 36923135 -147365527 - HAL1 LINE L1 -129 2378 2146 2450 73 0 13 chr4 36923135 36923450 -147365212 - AluY SINE Alu 0 311 1 1163 248 58 84 chr4 36923450 36923800 -147364862 - HAL1 LINE L1 -361 2146 1819 1237 94 0 85 chr4 36923938 36924139 -147364523 + AluSp SINE Alu 119 302 -11 218 103 35 35 chr4 36924355 36924413 -147364249 + CT-rich Low_complexity Low_complexity 3 60 0 413 344 106 9 chr4 36924428 36924646 -147364016 - MIR SINE MIR -1 261 23 325 252 171 0 chr4 36924729 36924840 -147363822 + MIR SINE MIR 91 220 -42 2103 134 6 10 chr4 36925213 36925526 -147363136 - AluSx SINE Alu 0 312 1 2925 185 28 3 chr4 36925789 36926388 -147362274 - L1MA8 LINE L1 -6 6285 5672 386 311 171 5 chr4 36926478 36926671 -147361991 - MIR SINE MIR -32 230 6 2173 119 0 0 chr4 36926885 36927212 -147361450 - AluSq SINE Alu 0 327 1 24 67 0 0 chr4 36927488 36927533 -147361129 + AT_rich Low_complexity Low_complexity 1 45 0 374 195 37 0 chr4 36927892 36927974 -147360688 - MER65A LTR ERV1 0 445 361 * 511 155 68 0 chr4 36927964 36928067 -147360595 + MER65A LTR ERV1 336 445 0 30 59 0 0 chr4 36928194 36928245 -147360417 + AT_rich Low_complexity Low_complexity 1 51 0 422 233 23 90 chr4 36928338 36928471 -147360191 - L2 LINE L2 0 3313 3190 22123 66 4 2 chr4 36928559 36932086 -147356576 + L1P LINE L1 547 4080 -2066 795 296 128 17 chr4 36932802 36933160 -147355502 + MLT1I LTR MaLR 3 400 -9 594 257 154 40 chr4 36933150 36933520 -147355142 + MLT1K LTR MaLR 167 578 -10 * 255 213 0 0 chr4 36935199 36935246 -147353416 - MLT1K LTR MaLR 0 588 542 315 344 200 0 chr4 36936584 36936814 -147351848 + L1MEd LINE L1 561 836 -5283 221 274 291 26 chr4 36937205 36937322 -147351340 - MIR SINE MIR -81 181 34 253 346 103 7 chr4 36937461 36937597 -147351065 - MIR SINE MIR -88 174 26 206 319 193 7 chr4 36937766 36937901 -147350761 + MIR SINE MIR 85 244 -18 395 217 121 19 chr4 36937905 36938112 -147350550 + MER113 DNA MER1_type? 69 296 -225 344 262 21 50 chr4 36939159 36939300 -147349362 + L1MC5 LINE L1 7646 7782 -179 365 233 167 0 chr4 36940234 36940354 -147348308 + MIR SINE MIR 110 249 -13 2302 116 0 0 chr4 36940674 36940984 -147347678 + AluSx SINE Alu 1 310 -2 295 297 171 9 chr4 36941378 36941489 -147347173 + MIR SINE MIR 1 129 -133 26 0 0 0 chr4 36941613 36941639 -147347023 + AT_rich Low_complexity Low_complexity 1 26 0 187 79 53 0 chr4 36941644 36941682 -147346980 + (TA)n Simple_repeat Simple_repeat 2 41 0 238 357 74 41 chr4 36941818 36942062 -147346600 - L2 LINE L2 -413 2901 2650 389 400 53 4 chr4 36942284 36942549 -147346113 + L2 LINE L2 2480 2757 -557 190 375 19 19 chr4 36943256 36943360 -147345302 + L2 LINE L2 3179 3282 -31 417 264 18 42 chr4 36943691 36943858 -147344804 + GA-rich Low_complexity Low_complexity 3 165 0 293 347 92 22 chr4 36945307 36945621 -147343041 + L2 LINE L2 2808 3143 -170 1036 292 102 43 chr4 36945669 36946250 -147342412 - L2 LINE L2 -3 3310 2695 3097 161 46 0 chr4 36946250 36946754 -147341908 - MER1A DNA MER1_type 0 527 1 1036 292 102 43 chr4 36946754 36946820 -147341842 - L2 LINE L2 -618 2695 2634 622 277 16 27 chr4 36947670 36947854 -147340808 - MIR3 SINE MIR -8 200 19 917 325 58 25 chr4 36947960 36948537 -147340125 + L1MCa LINE L1 24 597 -5826 2068 250 51 30 chr4 36948684 36949489 -147339173 + L1MCa LINE L1 885 1712 -4889 1707 158 30 0 chr4 36949569 36949873 -147338789 + L1MC3 LINE L1 7257 7569 -216 404 20 0 0 chr4 36949882 36949931 -147338731 - MADE1 DNA Mariner -4 76 28 895 207 0 0 chr4 36949954 36950133 -147338529 + L1MC3 LINE L1 7575 7753 -32 305 226 58 51 chr4 36950136 36950273 -147338389 - MER113 DNA MER1_type? -383 138 1 254 310 35 0 chr4 36950811 36950898 -147337764 + MER117 DNA MER1_type 3 92 -105 210 248 248 80 chr4 36951858 36951971 -147336691 - L2 LINE L2 0 3272 3141 696 157 25 0 chr4 36952817 36952938 -147335724 - MER65A LTR ERV1 0 445 322 2442 259 103 60 chr4 36953038 36953667 -147334995 - HAL1 LINE L1 -814 1693 1093 2423 77 0 0 chr4 36953667 36953966 -147334696 + AluY SINE Alu 1 299 -12 2442 259 103 60 chr4 36953966 36954863 -147333799 - HAL1 LINE L1 -1414 1093 100 25 31 0 0 chr4 36955001 36955033 -147333629 + AT_rich Low_complexity Low_complexity 1 32 0 370 214 86 17 chr4 36957999 36958116 -147330546 - L1MC5 LINE L1 -108 7853 7729 189 0 0 0 chr4 36958614 36958635 -147330027 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 552 307 95 22 chr4 36959141 36959372 -147329290 + L3 LINE CR1 1055 1302 -275 1714 157 0 62 chr4 36960359 36960683 -147327979 + AluJb SINE Alu 1 304 -8 198 0 0 0 chr4 36960717 36960739 -147327923 + (T)n Simple_repeat Simple_repeat 1 22 0 399 323 23 0 chr4 36960798 36960928 -147327734 - MIR SINE MIR -12 250 118 639 204 57 40 chr4 36961348 36961524 -147327138 + MER3 DNA MER1_type 1 179 -30 28 48 0 0 chr4 36961842 36961884 -147326778 + AT_rich Low_complexity Low_complexity 1 42 0 2093 75 0 0 chr4 36961904 36962169 -147326493 - AluY SINE Alu -12 299 35 220 325 8 79 chr4 36963207 36963306 -147325356 - L2 LINE L2 -8 3264 3174 1078 212 31 25 chr4 36963306 36963627 -147325035 + MER33 DNA MER1_type 1 323 -1 220 325 8 79 chr4 36963627 36963653 -147325009 - L2 LINE L2 -98 3174 3148 685 270 99 5 chr4 36963990 36964201 -147324461 - MIR SINE MIR -31 231 1 2696 39 0 0 chr4 36964571 36964882 -147323780 - AluY SINE Alu 0 311 1 650 289 111 40 chr4 36964897 36965267 -147323395 + L2 LINE L2 2918 3313 0 476 214 55 53 chr4 36966065 36966264 -147322398 - MER106B DNA MER1_type -36 1023 1 205 298 181 32 chr4 36966271 36966365 -147322297 + L2 LINE L2 3164 3271 -1 225 266 64 53 chr4 36967190 36967284 -147321378 - LTR16A1 LTR ERVL -112 345 251 1736 153 29 77 chr4 36967420 36967799 -147320863 - MLT1B LTR MaLR 0 390 30 691 161 0 51 chr4 36968115 36968252 -147320410 - FLAM_C SINE Alu -3 130 1 471 395 43 0 chr4 36968967 36969200 -147319462 + L2 LINE L2 2560 2802 -512 404 263 23 0 chr4 36969246 36969379 -147319283 + Charlie4 DNA MER1_type 1820 1955 -6 1631 81 8 92 chr4 36969390 36969651 -147319011 + AluSq SINE Alu 1 239 -74 381 231 45 126 chr4 36969689 36969888 -147318774 + L2 LINE L2 3094 3276 -37 2136 109 13 0 chr4 36970101 36970405 -147318257 - L1PA16 LINE L1 -172 5994 5687 217 146 0 36 chr4 36970527 36970582 -147318080 + (GAAAA)n Simple_repeat Simple_repeat 3 55 0 186 43 0 0 chr4 36971698 36971721 -147316941 + (CCCCCA)n Simple_repeat Simple_repeat 1 23 0 219 234 62 16 chr4 36972006 36972070 -147316592 + L2 LINE L2 3205 3271 -1 22 56 0 0 chr4 36972109 36972145 -147316517 + AT_rich Low_complexity Low_complexity 1 36 0 782 278 137 30 chr4 36972622 36973236 -147315426 - L2 LINE L2 -90 3223 2550 325 317 18 35 chr4 36974638 36974865 -147313797 + L1MEd LINE L1 1018 1240 -4879 235 286 87 61 chr4 36974928 36975159 -147313503 + L1M1 LINE L1 2708 2944 -4621 192 406 104 10 chr4 36976189 36976381 -147312281 - L2 LINE L2 -189 3083 2874 315 104 0 0 chr4 36976429 36976477 -147312185 + (CA)n Simple_repeat Simple_repeat 1 48 0 332 284 67 32 chr4 36977057 36977134 -147311528 + L1MEd LINE L1 789 862 -5257 2574 139 5 31 chr4 36977134 36977579 -147311083 + Tigger2a DNA MER2_type 1 433 -1 332 284 67 32 chr4 36977579 36977786 -147310876 + L1MEd LINE L1 862 1106 -5013 341 317 34 53 chr4 36978191 36978399 -147310263 - HAL1b LINE L1 -868 480 277 29 0 0 0 chr4 36979740 36979769 -147308893 + AT_rich Low_complexity Low_complexity 1 29 0 38 22 0 0 chr4 36980268 36980313 -147308349 + AT_rich Low_complexity Low_complexity 1 45 0 202 250 48 48 chr4 36981305 36981409 -147307253 - L3b LINE CR1 -182 1401 1298 457 281 56 75 chr4 36982037 36982564 -147306098 + L2 LINE L2 2513 3149 -164 1877 155 0 7 chr4 36982870 36983173 -147305489 + AluJb SINE Alu 1 301 -11 2154 164 40 26 chr4 36984333 36984753 -147303909 + MSTB LTR MaLR 1 426 0 243 0 0 0 chr4 36985912 36985939 -147302723 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 1965 126 38 7 chr4 36985967 36986260 -147302402 + AluSx SINE Alu 1 302 -10 1958 173 50 27 chr4 36986325 36986765 -147301897 + L1MB2 LINE L1 5720 6169 -2 338 326 53 0 chr4 36986981 36987076 -147301586 + MIR SINE MIR 48 147 -61 741 297 5 0 chr4 36987464 36987659 -147301003 + MIR SINE MIR 56 251 -11 189 309 148 12 chr4 36988483 36988564 -147300098 - L2 LINE L2 -48 3224 3133 880 171 46 78 chr4 36989631 36989796 -147298866 - MER65A LTR ERV1 -235 210 52 2270 85 0 22 chr4 36989796 36990113 -147298549 - AluY SINE Alu -1 310 1 880 171 46 78 chr4 36990113 36990164 -147298498 - MER65A LTR ERV1 -393 52 1 2284 229 70 8 chr4 36990165 36990762 -147297900 - MER65A-int LTR ERV1 -1 4870 4237 1003 247 114 0 chr4 36990762 36991025 -147297637 - MER65A-int LTR ERV1 -739 4132 3840 344 203 0 0 chr4 36991089 36991148 -147297514 - MER31-int LTR ERV1 -525 4411 4353 886 153 94 20 chr4 36991225 36991428 -147297234 - MER31-int LTR ERV1 -1145 3791 3574 524 269 117 51 chr4 36991692 36991949 -147296713 - MER102a DNA MER1_type -1 329 56 359 314 10 10 chr4 36992258 36992360 -147296302 + L2 LINE L2 3169 3270 -43 884 269 106 51 chr4 36992860 36993452 -147295210 - MER65-int LTR ERV1 -2746 5374 4750 24 96 0 0 chr4 36993454 36993527 -147295135 + AT_rich Low_complexity Low_complexity 1 73 0 306 177 85 0 chr4 36993640 36993804 -147294858 + (TA)n Simple_repeat Simple_repeat 2 179 0 33 56 0 0 chr4 36993804 36993858 -147294804 + AT_rich Low_complexity Low_complexity 1 54 0 1109 180 60 88 chr4 36993886 36994365 -147294297 - MER65-int LTR ERV1 -2096 4235 3730 565 216 34 49 chr4 36994440 36994644 -147294018 - MER65-int LTR ERV1 -2861 3737 3537 5902 185 70 81 chr4 36994721 36996227 -147292435 - MER65-int LTR ERV1 -2378 2493 1763 267 103 0 0 chr4 36996227 36996266 -147292396 + (CA)n Simple_repeat Simple_repeat 2 40 0 5902 185 70 81 chr4 36996266 36997434 -147291228 - MER65-int LTR ERV1 -3108 1763 583 2167 96 0 3 chr4 36997434 36997737 -147290925 - AluY SINE Alu 0 304 3 4097 99 83 35 chr4 36997904 36999210 -147289452 + pTR5 LTR ERV1 743 2468 0 661 220 60 56 chr4 36999213 36999463 -147289199 - MER65-int LTR ERV1 -4560 311 61 2226 163 11 6 chr4 36999768 37000131 -147288531 - MLT1A1 LTR MaLR 0 365 1 359 336 73 39 chr4 37000759 37000991 -147287671 + MIR SINE MIR 20 259 -3 309 320 25 16 chr4 37001115 37001237 -147287425 + MIR3 SINE MIR 85 207 -1 1837 199 3 3 chr4 37001700 37002036 -147286626 - MER7A DNA MER2_type 0 346 13 29 28 0 0 chr4 37002048 37002084 -147286578 + AT_rich Low_complexity Low_complexity 1 36 0 6386 126 9 26 chr4 37002090 37003207 -147285455 - L1PB1 LINE L1 0 6151 5069 2000 152 3 0 chr4 37003207 37003504 -147285158 - AluSx SINE Alu -12 300 3 6386 126 9 26 chr4 37003504 37003801 -147284861 - L1PB1 LINE L1 -1082 5069 4768 234 313 61 10 chr4 37004373 37004472 -147284190 - MIR SINE MIR -6 256 153 413 281 118 0 chr4 37004570 37004705 -147283957 + MIR SINE MIR 34 184 -78 26 30 0 0 chr4 37004741 37004774 -147283888 + AT_rich Low_complexity Low_complexity 1 33 0 932 252 51 13 chr4 37005181 37005415 -147283247 - MIR SINE MIR 0 262 20 651 281 41 21 chr4 37006306 37006548 -147282114 + MIR SINE MIR 3 249 -13 2215 105 3 0 chr4 37006655 37006950 -147281712 + AluSp SINE Alu 1 296 -17 24 0 0 0 chr4 37007116 37007140 -147281522 + AT_rich Low_complexity Low_complexity 1 24 0 249 139 0 0 chr4 37007420 37007463 -147281199 + (GA)n Simple_repeat Simple_repeat 2 44 0 9550 42 6 1 chr4 37007925 37009881 -147278781 + L1PA5 LINE L1 4190 6152 -2 202 319 96 11 chr4 37010602 37010696 -147277966 + L2 LINE L2 2887 2988 -284 408 299 120 22 chr4 37011883 37012067 -147276595 - MIR SINE MIR -46 216 15 955 213 30 61 chr4 37012205 37012468 -147276194 + MLT1E2 LTR MaLR 1 255 -371 448 213 96 0 chr4 37012502 37012596 -147276066 - MER63 DNA MER1_type -333 729 1 188 309 18 0 chr4 37012622 37012677 -147275985 - MIR SINE MIR -118 144 89 516 279 79 57 chr4 37013274 37013539 -147275123 - LTR33 LTR ERVL -234 287 17 200 214 54 36 chr4 37015151 37015207 -147273455 + MIR SINE MIR 96 152 -56 436 238 222 26 chr4 37015362 37015551 -147273111 + LTR50 LTR ERVL 65 290 -505 1294 177 111 58 chr4 37015659 37016021 -147272641 - MLT1B LTR MaLR 0 390 10 505 310 141 11 chr4 37016006 37016354 -147272308 + LTR50 LTR ERVL 394 786 -9 * 1767 298 114 46 chr4 37016366 37017314 -147271348 - L2 LINE L2 -316 2997 1991 1215 119 4 123 chr4 37017335 37017612 -147271050 + Tigger4(Zombi) DNA MER2_type 2488 2731 0 534 243 22 132 chr4 37017901 37018173 -147270489 - MIR SINE MIR -3 259 18 284 279 96 29 chr4 37019208 37019312 -147269350 - L2 LINE L2 -2 3270 3160 355 340 9 56 chr4 37019312 37019544 -147269118 - MIR SINE MIR -13 249 29 596 274 178 8 chr4 37020108 37020418 -147268244 + MLT2E LTR ERVL 15 422 -206 242 238 16 0 chr4 37020469 37020532 -147268130 + MLT2E LTR ERVL 533 596 -32 22 35 0 0 chr4 37021036 37021065 -147267597 + AT_rich Low_complexity Low_complexity 1 29 0 2679 187 29 13 chr4 37021304 37021919 -147266743 - L1MC3 LINE L1 -1 7784 7160 1788 175 19 0 chr4 37021920 37022228 -147266434 - MLT1C LTR MaLR -1 466 153 240 211 40 23 chr4 37022622 37022797 -147265865 + (TA)n Simple_repeat Simple_repeat 1 178 0 2235 143 14 6 chr4 37023744 37024095 -147264567 - MLT1A1 LTR MaLR -8 357 4 355 253 212 54 chr4 37026728 37026969 -147261693 + L2 LINE L2 3033 3311 -2 343 264 0 22 chr4 37027105 37027196 -147261466 + L2 LINE L2 3215 3303 -10 184 326 37 74 chr4 37027622 37027757 -147260905 - L2 LINE L2 -211 3061 2932 7999 173 129 42 chr4 37027777 37028975 -147259687 - L1MCa LINE L1 -4250 2176 1084 1852 166 41 12 chr4 37028975 37029319 -147259343 - L1PA15 LINE L1 -1 6164 5811 7999 173 129 42 chr4 37029319 37029783 -147258879 - L1MCa LINE L1 -5342 1084 662 2205 110 72 20 chr4 37029783 37030128 -147258534 + THE1B LTR MaLR 1 363 -1 7999 173 129 42 chr4 37030128 37030458 -147258204 - L1MCa LINE L1 -5764 662 9 205 110 98 24 chr4 37031046 37031128 -147257534 + (AATAG)n Simple_repeat Simple_repeat 3 90 0 323 336 83 29 chr4 37031454 37031766 -147256896 - MER102a DNA MER1_type 0 330 2 1080 231 87 73 chr4 37032046 37032962 -147255700 + L1ME2 LINE L1 5122 6087 -77 297 268 12 0 chr4 37033002 37033084 -147255578 + (TA)n Simple_repeat Simple_repeat 2 84 0 404 253 105 11 chr4 37033110 37033300 -147255362 + L1ME3A LINE L1 5743 5950 -220 191 265 41 0 chr4 37033522 37033571 -147255091 - MIR SINE MIR -15 247 197 198 0 0 0 chr4 37033578 37033600 -147255062 + (TG)n Simple_repeat Simple_repeat 2 23 0 3634 138 160 6 chr4 37033615 37034662 -147254000 + Tigger3(Golem) DNA MER2_type 21 3025 -4 495 259 38 25 chr4 37034703 37034861 -147253801 - MIR SINE MIR -95 167 8 213 297 161 0 chr4 37035224 37035342 -147253320 - MIR SINE MIR -72 190 54 326 286 48 42 chr4 37035469 37035658 -147253004 + MIR SINE MIR 73 262 0 27 81 0 0 chr4 37035771 37035833 -147252829 + AT_rich Low_complexity Low_complexity 1 62 0 987 225 87 58 chr4 37036895 37037068 -147251594 + MLT1B LTR MaLR 1 168 -260 189 0 0 0 chr4 37037068 37037089 -147251573 + (TC)n Simple_repeat Simple_repeat 1 21 0 987 225 87 58 chr4 37037089 37037286 -147251376 + MLT1B LTR MaLR 168 428 0 22 0 0 0 chr4 37037398 37037420 -147251242 + AT_rich Low_complexity Low_complexity 1 22 0 294 29 0 0 chr4 37037566 37037601 -147251061 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 23 92 0 0 chr4 37038046 37038111 -147250551 + AT_rich Low_complexity Low_complexity 1 65 0 1838 170 140 45 chr4 37039642 37040113 -147248549 + MER34 LTR ERV1 27 542 0 318 279 147 7 chr4 37040449 37040585 -147248077 + MIR SINE MIR 13 167 -95 264 330 36 36 chr4 37040702 37040814 -147247848 - L2 LINE L2 -22 3291 3180 257 356 76 8 chr4 37041478 37041596 -147247066 - L2 LINE L2 -9 3263 3138 1252 226 50 47 chr4 37043193 37043658 -147245004 - LTR37B LTR ERV1 -2 466 1 276 210 284 0 chr4 37043950 37044031 -147244631 + L1ME3A LINE L1 6059 6162 -8 2118 106 7 13 chr4 37044403 37044731 -147243931 + AluSx SINE Alu 1 312 0 1273 249 21 42 chr4 37045176 37045558 -147243104 + MLT1A2 LTR MaLR 1 374 0 280 275 188 31 chr4 37045558 37045718 -147242944 + L2 LINE L2 2553 2737 -577 470 302 84 19 chr4 37046905 37047120 -147241542 + MIR SINE MIR 24 252 -10 204 40 0 0 chr4 37048081 37048106 -147240556 + (A)n Simple_repeat Simple_repeat 1 25 0 23 0 0 0 chr4 37049042 37049065 -147239597 + GC_rich Low_complexity Low_complexity 1 23 0 25 51 0 0 chr4 37049212 37049251 -147239411 + GC_rich Low_complexity Low_complexity 1 39 0 1855 136 10 10 chr4 37049849 37050143 -147238519 - AluSx SINE Alu -14 298 5 21 0 0 0 chr4 37050150 37050171 -147238491 + AT_rich Low_complexity Low_complexity 1 21 0 1963 135 0 22 chr4 37050686 37050997 -147237665 - AluSx SINE Alu -8 304 1 821 238 182 25 chr4 37051661 37051947 -147236715 + HsTC2 DNA Tc2 6 336 -1562 267 156 26 52 chr4 37051934 37052011 -147236651 + HsTC2 DNA Tc2 1706 1780 -118 * 33 0 0 0 chr4 37052012 37052045 -147236617 + AT_rich Low_complexity Low_complexity 1 33 0 4901 148 23 31 chr4 37052147 37053106 -147235556 + L1PA16 LINE L1 5214 6165 -1 331 266 146 82 chr4 37053589 37053787 -147234875 + MER102b DNA MER1_type 1 228 -1200 2044 121 7 17 chr4 37053787 37054084 -147234578 + AluSx SINE Alu 1 294 -18 331 266 146 82 chr4 37054084 37054201 -147234461 + MER102b DNA MER1_type 228 336 -5 325 281 17 34 chr4 37054568 37054746 -147233916 + (TA)n Simple_repeat Simple_repeat 1 175 0 331 331 75 50 chr4 37055281 37055612 -147233050 - L2 LINE L2 -212 3060 2726 25 65 0 0 chr4 37058013 37058059 -147230603 + AT_rich Low_complexity Low_complexity 1 46 0 228 35 0 0 chr4 37058087 37058116 -147230546 + (CA)n Simple_repeat Simple_repeat 2 30 0 2286 91 10 10 chr4 37058126 37058433 -147230229 - AluSc SINE Alu -2 307 1 579 287 106 21 chr4 37058540 37058728 -147229934 - MIR SINE MIR -11 251 48 384 242 0 11 chr4 37059728 37059819 -147228843 - MER103 DNA DNA -75 91 2 198 289 52 62 chr4 37060460 37060557 -147228105 - MIR SINE MIR 0 262 167 21 36 0 0 chr4 37060567 37060595 -147228067 + AT_rich Low_complexity Low_complexity 1 28 0 1634 182 3 35 chr4 37060619 37060937 -147227725 - AluJo SINE Alu -4 308 1 310 273 20 40 chr4 37060940 37061039 -147227623 - MIR SINE MIR -115 147 51 235 227 196 0 chr4 37061101 37061198 -147227464 - MLT1J LTR MaLR -18 493 378 1388 202 47 16 chr4 37061226 37061543 -147227119 + MLT1A1 LTR MaLR 26 352 -13 325 337 0 0 chr4 37061549 37061724 -147226938 + (CAGC)n Simple_repeat Simple_repeat 2 176 0 224 359 6 0 chr4 37061800 37061967 -147226695 + (CAGC)n Simple_repeat Simple_repeat 2 169 0 749 312 52 55 chr4 37061969 37062265 -147226397 - MLT1J LTR MaLR -185 326 30 487 57 57 0 chr4 37062265 37062353 -147226309 + (TA)n Simple_repeat Simple_repeat 2 94 0 749 312 52 55 chr4 37062353 37062383 -147226279 - MLT1J LTR MaLR -481 30 1 1107 116 32 21 chr4 37062703 37062892 -147225770 + L1PA10 LINE L1 5978 6168 0 2264 118 0 9 chr4 37064249 37064564 -147224098 + AluSx SINE Alu 1 312 0 1157 259 56 38 chr4 37065183 37065730 -147222932 - MLT2E LTR ERVL 0 628 25 221 252 189 27 chr4 37065781 37065892 -147222770 + MIR SINE MIR 131 259 -3 748 320 20 70 chr4 37065974 37066462 -147222200 + LTR16B LTR ERVL 1 464 0 396 114 11 34 chr4 37067361 37067449 -147221213 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 23 0 0 0 chr4 37067767 37067790 -147220872 + AT_rich Low_complexity Low_complexity 1 23 0 795 228 0 6 chr4 37067866 37068033 -147220629 + FRAM SINE Alu 1 166 0 288 244 24 37 chr4 37068226 37068308 -147220354 + MIR3 SINE MIR 119 199 -9 190 197 0 171 chr4 37069107 37069183 -147219479 + L2 LINE L2 3246 3308 -5 228 35 0 0 chr4 37069496 37069525 -147219137 + (A)n Simple_repeat Simple_repeat 1 29 0 1605 162 54 0 chr4 37072426 37072704 -147215958 + AluSx SINE Alu 1 293 -19 742 121 0 10 chr4 37074040 37074300 -147214362 + AluSx SINE Alu 1 356 0 21 36 0 0 chr4 37074844 37074872 -147213790 + AT_rich Low_complexity Low_complexity 1 28 0 241 179 60 37 chr4 37075164 37075298 -147213364 + (TA)n Simple_repeat Simple_repeat 1 137 0 226 306 187 15 chr4 37076245 37076379 -147212283 + MER5A DNA MER1_type 33 189 0 2203 110 13 10 chr4 37076389 37076699 -147211963 - AluSx SINE Alu 0 312 2 1544 201 0 20 chr4 37077273 37077567 -147211095 - AluJo SINE Alu -24 288 1 3066 143 12 4 chr4 37078410 37078898 -147209764 - LTR38 LTR ERV1 -64 492 1 1971 225 166 0 chr4 37079896 37080478 -147208184 - L1MD3 LINE L1 -2 7993 5676 198 118 0 0 chr4 37084681 37084715 -147203947 + (TG)n Simple_repeat Simple_repeat 2 35 0 1694 117 3 65 chr4 37084834 37085125 -147203537 + AluSc SINE Alu 1 273 -36 216 0 0 0 chr4 37085125 37085149 -147203513 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 510 286 74 11 chr4 37085149 37085324 -147203338 + MER5A DNA MER1_type 3 188 -1 3872 121 11 28 chr4 37086245 37086864 -147201798 - MER4B LTR ERV1 0 610 2 281 281 10 21 chr4 37087764 37087860 -147200802 - L1ME4a LINE L1 -63 6058 5964 272 313 16 39 chr4 37088117 37088299 -147200363 + (CA)n Simple_repeat Simple_repeat 2 179 0 213 261 15 0 chr4 37088393 37088458 -147200204 + (CA)n Simple_repeat Simple_repeat 1 66 0 494 305 117 14 chr4 37088798 37089080 -147199582 + LTR33 LTR ERVL 210 520 -1 571 229 40 49 chr4 37089232 37089455 -147199207 - L1ME4a LINE L1 -195 5975 5755 243 0 0 0 chr4 37089876 37089903 -147198759 + (TTAA)n Simple_repeat Simple_repeat 3 29 0 1664 177 0 7 chr4 37089903 37090174 -147198488 - AluJb SINE Alu -25 287 19 225 266 11 53 chr4 37090377 37090471 -147198191 - MER20B DNA MER1_type -629 154 65 206 298 70 76 chr4 37090986 37091144 -147197518 + L2 LINE L2 3130 3286 -27 437 351 26 7 chr4 37091410 37091561 -147197101 + L2 LINE L2 3115 3268 -4 3002 186 70 5 chr4 37091687 37092301 -147196361 + LTR65 LTR ERV1 8 661 -8 455 255 152 7 chr4 37092331 37092476 -147196186 - MER5B DNA MER1_type 0 178 13 426 329 136 5 chr4 37094209 37094422 -147194240 + MLT1I LTR MaLR 79 319 -90 275 271 147 0 chr4 37094728 37094857 -147193805 - MIR SINE MIR -13 249 102 186 143 0 0 chr4 37094905 37094940 -147193722 - L2 LINE L2 -4 3309 3275 267 288 100 38 chr4 37095153 37095313 -147193349 + MLT1E LTR MaLR 157 326 -298 630 180 0 47 chr4 37095334 37095462 -147193200 - FLAM_C SINE Alu -17 126 5 1002 280 29 13 chr4 37095474 37095785 -147192877 + MLT1E LTR MaLR 277 592 -1 231 36 0 0 chr4 37097045 37097073 -147191589 + (GCTTG)n Simple_repeat Simple_repeat 5 32 0 1592 121 136 11 chr4 37097165 37097320 -147191342 - AluSg SINE Alu -13 297 163 243 88 0 0 chr4 37097320 37097354 -147191308 + (TG)n Simple_repeat Simple_repeat 1 34 0 1592 121 136 11 chr4 37097354 37097462 -147191200 - AluSg SINE Alu -147 163 1 240 305 35 85 chr4 37097600 37097741 -147190921 + MIR3 SINE MIR 21 154 -54 672 237 87 0 chr4 37098140 37098313 -147190349 - MER5A DNA MER1_type 0 189 2 751 229 123 20 chr4 37098359 37098612 -147190050 + Charlie4a DNA MER1_type 21 299 -209 246 291 99 66 chr4 37148626 37148808 -147139854 - L1MEc LINE L1 -6010 386 199 1388 207 27 27 chr4 37148808 37149103 -147139559 - AluJo SINE Alu -7 305 11 467 277 31 6 chr4 37149119 37149278 -147139384 - L1MEc LINE L1 -6192 204 42 12252 221 29 16 chr4 37149820 37154145 -147134517 - L1PA16 LINE L1 -8 6158 1789 26 30 0 0 chr4 37154252 37154285 -147134377 + AT_rich Low_complexity Low_complexity 1 33 0 1810 158 0 7 chr4 37154481 37154766 -147133896 + AluSx SINE Alu 1 283 -29 277 264 40 16 chr4 37155103 37155228 -147133434 - L1ME4a LINE L1 -21 6100 5973 230 286 50 91 chr4 37156709 37156807 -147131855 + HAL1 LINE L1 1331 1431 -1076 3628 108 15 0 chr4 37156807 37157337 -147131325 + L1PA13 LINE L1 5625 6162 -1 230 286 50 91 chr4 37157337 37157458 -147131204 + HAL1 LINE L1 1431 1541 -966 32 0 0 0 chr4 37157518 37157550 -147131112 + AT_rich Low_complexity Low_complexity 1 32 0 274 125 167 0 chr4 37157550 37157622 -147131040 - L1MA7 LINE L1 -1 6290 6207 3956 26 0 0 chr4 37157962 37158421 -147130241 + L1PA3 LINE L1 5694 6152 -3 1493 335 111 25 chr4 37158522 37159870 -147128792 + L2 LINE L2 1843 3312 -1 203 294 24 24 chr4 37160051 37160136 -147128526 + MIR SINE MIR 157 241 -21 2878 281 142 49 chr4 37161470 37161660 -147127002 - L1MD3 LINE L1 -10 7985 7814 2130 108 7 13 chr4 37161660 37161967 -147126695 - AluSp SINE Alu -8 305 1 2878 281 142 49 chr4 37161967 37162129 -147126533 - L1MD3 LINE L1 -181 7814 7668 1851 141 5 83 chr4 37162129 37162504 -147126158 + MER7A DNA MER2_type 2 345 -1 2878 281 142 49 chr4 37162504 37163369 -147125293 - L1MD3 LINE L1 -327 7668 6654 479 230 60 0 chr4 37163587 37163687 -147124975 + MER5A DNA MER1_type 4 109 -80 413 104 52 13 chr4 37164093 37164170 -147124492 - MADE1 DNA Mariner 0 80 1 21 0 0 0 chr4 37164260 37164281 -147124381 + AT_rich Low_complexity Low_complexity 1 21 0 2531 106 14 0 chr4 37164371 37164730 -147123932 + THE1B LTR MaLR 1 364 0 9298 137 36 17 chr4 37164731 37166280 -147122382 + THE1B-int LTR MaLR 2 1579 -1 2573 115 3 6 chr4 37166281 37166646 -147122016 + THE1B LTR MaLR 1 364 0 278 269 30 0 chr4 37166657 37166724 -147121938 - MIR SINE MIR -96 166 98 378 276 103 26 chr4 37166849 37167005 -147121657 + MIR SINE MIR 20 187 -75 374 229 144 8 chr4 37167971 37168089 -147120573 + MIR SINE MIR 33 166 -96 638 257 117 31 chr4 37168100 37168357 -147120305 + L2 LINE L2 3017 3295 -18 33 0 0 0 chr4 37168386 37168419 -147120243 + AT_rich Low_complexity Low_complexity 1 33 0 568 362 27 12 chr4 37168792 37169049 -147119613 - MIR SINE MIR 0 262 2 396 310 82 12 chr4 37169437 37169608 -147119054 - MIR SINE MIR -74 188 6 2205 107 0 10 chr4 37169894 37170193 -147118469 + AluY SINE Alu 1 296 -15 1091 235 94 11 chr4 37170243 37170644 -147118018 - MER57A LTR ERV1 -2 401 3 215 200 0 29 chr4 37171291 37171361 -147117301 + (TCTA)n Simple_repeat Simple_repeat 3 70 0 188 292 62 0 chr4 37173431 37173496 -147115166 + MIR SINE MIR 124 192 -70 22 0 0 0 chr4 37173538 37173560 -147115102 + AT_rich Low_complexity Low_complexity 1 22 0 2198 102 0 0 chr4 37173561 37173856 -147114806 - AluY SINE Alu -16 295 1 478 291 54 41 chr4 37173923 37174218 -147114444 + L1ME3A LINE L1 3865 4163 -1983 227 291 75 8 chr4 37174361 37174495 -147114167 + L1ME3A LINE L1 4515 4657 -1489 253 336 52 9 chr4 37174590 37174801 -147113861 + L1ME3A LINE L1 4888 5107 -1039 2182 138 31 14 chr4 37174835 37175189 -147113473 + THE1B LTR MaLR 1 360 -4 204 284 0 0 chr4 37175307 37175381 -147113281 + (TA)n Simple_repeat Simple_repeat 2 75 0 * 234 180 0 0 chr4 37175334 37175384 -147113278 + T-rich Low_complexity Low_complexity 3 52 0 423 284 69 21 chr4 37175398 37175704 -147112958 + L1ME3A LINE L1 5288 5582 -580 438 280 130 34 chr4 37175729 37175968 -147112694 + L1ME3A LINE L1 5686 5947 -215 23 33 0 0 chr4 37176145 37176175 -147112487 + AT_rich Low_complexity Low_complexity 1 30 0 615 289 98 68 chr4 37176589 37177164 -147111498 + L2 LINE L2 2661 3240 -73 288 248 47 69 chr4 37177188 37177489 -147111173 - L1MCc LINE L1 -4967 1456 1391 1278 141 52 19 chr4 37177558 37177828 -147110834 - L1MA5A LINE L1 -1 6296 6018 312 70 0 0 chr4 37177901 37177944 -147110718 + (TATG)n Simple_repeat Simple_repeat 2 44 0 369 0 0 0 chr4 37177991 37178032 -147110630 + (TG)n Simple_repeat Simple_repeat 2 42 0 253 311 14 0 chr4 37178059 37178133 -147110529 - L1MCc LINE L1 -5495 1436 1362 2094 102 10 10 chr4 37178656 37178961 -147109701 + AluSx SINE Alu 6 310 -2 22 35 0 0 chr4 37179331 37179360 -147109302 + AT_rich Low_complexity Low_complexity 1 29 0 258 325 12 0 chr4 37179537 37179620 -147109042 - MIR3 SINE MIR -1 207 124 503 16 16 0 chr4 37180291 37180355 -147108307 + (CA)n Simple_repeat Simple_repeat 2 66 0 2265 105 0 0 chr4 37180585 37180881 -147107781 + AluSg SINE Alu 1 296 -14 856 264 33 7 chr4 37181022 37181295 -147107367 + MER93a LTR ERV1 120 399 -3 341 328 18 35 chr4 37181433 37181604 -147107058 + MER5A DNA MER1_type 11 178 -11 390 313 14 14 chr4 37181436 37181583 -147107079 - MER5B DNA MER1_type -1 177 31 271 316 58 22 chr4 37181605 37181744 -147106918 + MIR SINE MIR 96 239 -23 212 338 0 0 chr4 37181786 37181860 -147106802 + (TTA)n Simple_repeat Simple_repeat 1 74 0 313 259 157 42 chr4 37181865 37182151 -147106511 + L1ME4a LINE L1 5765 6083 -38 951 129 29 0 chr4 37183881 37184020 -147104642 + MER30 DNA MER1_type 87 229 -1 267 103 0 0 chr4 37184347 37184386 -147104276 + (TA)n Simple_repeat Simple_repeat 2 40 0 1967 125 0 20 chr4 37184647 37184950 -147103712 - AluSx SINE Alu -7 305 9 1193 261 43 10 chr4 37185504 37185953 -147102709 - MER90 LTR ERV1 -4 610 106 1329 178 30 11 chr4 37185955 37186219 -147102443 - THE1C LTR MaLR 0 375 107 1490 62 54 120 chr4 37186219 37186495 -147102167 + MLT2A2 LTR ERVL 1 258 -195 348 103 0 0 chr4 37186495 37186553 -147102109 + (TA)n Simple_repeat Simple_repeat 2 59 0 315 190 0 100 chr4 37186561 37186661 -147102001 + L1MC4 LINE L1 6614 6703 -1339 394 91 0 0 chr4 37186692 37186747 -147101915 + MLT2A2 LTR ERVL 399 453 0 41713 88 17 2 chr4 37186747 37192317 -147096345 + HERVL-A2-A1 LTR ERVL 1 5654 0 2725 101 23 8 chr4 37192317 37192713 -147095949 + MLT2A1 LTR ERVL 3 404 -40 414 195 0 0 chr4 37192715 37192802 -147095860 + (CATA)n Simple_repeat Simple_repeat 2 88 0 260 149 0 54 chr4 37192810 37192884 -147095778 + (TA)n Simple_repeat Simple_repeat 2 71 0 319 81 0 32 chr4 37192896 37192958 -147095704 + (TA)n Simple_repeat Simple_repeat 2 61 0 565 167 79 26 chr4 37192972 37193086 -147095576 - MSTA LTR MaLR -255 120 1 450 176 0 44 chr4 37193093 37193184 -147095478 - MER90 LTR ERV1 -525 89 3 303 191 0 0 chr4 37193332 37193400 -147095262 + GA-rich Low_complexity Low_complexity 2 69 0 2385 99 3 0 chr4 37193405 37193717 -147094945 + AluSq SINE Alu 1 313 0 1127 291 106 27 chr4 37193807 37194288 -147094374 + MLT1E LTR MaLR 75 593 0 294 274 0 27 chr4 37194295 37194368 -147094294 - MER96 DNA MER1_type? -1 174 104 22 0 0 0 chr4 37195028 37195050 -147093612 + AT_rich Low_complexity Low_complexity 1 22 0 465 304 143 19 chr4 37195193 37195354 -147093308 - MER5A DNA MER1_type 0 189 9 767 247 28 0 chr4 37195374 37195556 -147093106 + MER5A DNA MER1_type 3 189 0 212 320 30 40 chr4 37195567 37195667 -147092995 - MER5B DNA MER1_type -1 177 79 243 185 25 99 chr4 37195668 37195749 -147092913 + MER106A DNA MER1_type 162 236 0 484 274 132 15 chr4 37197822 37198026 -147090636 + MIR SINE MIR 26 253 -9 25 0 0 0 chr4 37198067 37198092 -147090570 + AT_rich Low_complexity Low_complexity 1 25 0 183 162 0 0 chr4 37198124 37198161 -147090501 + T-rich Low_complexity Low_complexity 1 37 0 1944 158 0 0 chr4 37198172 37198475 -147090187 - AluSx SINE Alu -9 303 1 212 317 106 16 chr4 37198490 37198613 -147090049 + MIR SINE MIR 129 262 0 1757 129 63 30 chr4 37198637 37198939 -147089723 + AluJb SINE Alu 1 312 0 297 0 0 0 chr4 37198944 37198977 -147089685 + (TA)n Simple_repeat Simple_repeat 1 33 0 2227 87 0 0 chr4 37199308 37199595 -147089067 + AluY SINE Alu 1 287 -24 216 0 0 0 chr4 37199598 37199622 -147089040 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 21 82 0 0 chr4 37199708 37199757 -147088905 + AT_rich Low_complexity Low_complexity 1 49 0 278 187 65 19 chr4 37200940 37201047 -147087615 + (TAGA)n Simple_repeat Simple_repeat 1 112 0 185 0 40 0 chr4 37202169 37202194 -147086468 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 1849 148 0 14 chr4 37204008 37204298 -147084364 - AluSx SINE Alu -26 286 1 364 319 53 0 chr4 37204299 37204412 -147084250 - 7SLRNA srpRNA srpRNA -161 159 41 849 153 25 64 chr4 37204707 37204909 -147083753 - L1MA9 LINE L1 0 6312 6119 2373 151 16 50 chr4 37205057 37205500 -147083162 + MSTC LTR MaLR 1 428 0 3537 244 22 10 chr4 37205557 37206626 -147082036 + L1M4 LINE L1 2705 3786 -2360 2233 133 18 0 chr4 37206621 37207019 -147081643 - L1P LINE L1 -760 5386 4982 * 21 36 0 0 chr4 37207023 37207051 -147081611 + AT_rich Low_complexity Low_complexity 1 28 0 5027 114 13 8 chr4 37207055 37207810 -147080852 + L1PA11 LINE L1 5407 6165 -9 4418 226 60 15 chr4 37207947 37209339 -147079323 + L1M4 LINE L1 3861 5314 -832 526 144 0 99 chr4 37209337 37209448 -147079214 + L1MA9 LINE L1 5821 5920 -371 * 6470 134 38 47 chr4 37209448 37210716 -147077946 + MER52C LTR ERV1 22 1278 0 1720 162 53 21 chr4 37210718 37211094 -147077568 + L1MA9 LINE L1 5925 6312 0 434 200 0 0 chr4 37211097 37211182 -147077480 + L1M LINE L1 5315 5399 -934 2829 111 16 57 chr4 37211183 37211696 -147076966 + L1PA15-16 LINE L1 2081 2572 -4277 330 258 11 11 chr4 37212119 37212212 -147076450 + (TATATG)n Simple_repeat Simple_repeat 4 96 0 314 256 22 44 chr4 37212214 37212304 -147076358 - L1MC4 LINE L1 -1341 6701 6614 35 24 0 0 chr4 37212375 37212417 -147076245 + AT_rich Low_complexity Low_complexity 1 42 0 578 269 108 17 chr4 37212458 37212899 -147075763 + L1MC/D LINE L1 5276 5761 -534 468 175 0 0 chr4 37214119 37214199 -147074463 + MADE1 DNA Mariner 1 80 0 217 371 95 0 chr4 37214521 37214637 -147074025 + L2 LINE L2 3146 3272 0 3875 36 0 2 chr4 37215950 37216421 -147072241 + L1PA4 LINE L1 5682 6151 -4 845 275 92 61 chr4 37216878 37217271 -147071391 + MLT1K LTR MaLR 165 569 -19 741 237 138 22 chr4 37217650 37217874 -147070788 - MIR SINE MIR -4 258 9 1536 154 4 0 chr4 37218864 37219123 -147069539 - L1MA5A LINE L1 -8 6289 6030 676 309 71 30 chr4 37219361 37219711 -147068951 + L2 LINE L2 2707 3078 -235 4030 116 26 3 chr4 37219711 37220332 -147068330 - MER41B LTR ERV1 0 635 1 676 309 71 30 chr4 37220332 37220427 -147068235 + L2 LINE L2 3078 3168 -145 457 188 62 18 chr4 37220530 37220642 -147068020 + MER4A LTR ERV1 1 117 -547 674 162 8 174 chr4 37220719 37221053 -147067609 + LTR34 LTR ERV1 136 260 -205 552 251 33 63 chr4 37221026 37221303 -147067359 + MER4C LTR ERV1 273 465 0 * 2209 85 3 26 chr4 37221318 37221653 -147067009 - AluSc SINE Alu 0 309 1 255 61 0 0 chr4 37221657 37221690 -147066972 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 325 220 69 107 chr4 37221726 37221777 -147066885 + L2 LINE L2 3158 3209 -104 2973 167 24 43 chr4 37221777 37222400 -147066262 - LTR9 LTR ERV1 0 612 2 325 220 69 107 chr4 37222400 37222507 -147066155 + L2 LINE L2 3209 3310 -3 316 240 70 30 chr4 37222512 37222612 -147066050 + MLT1J LTR MaLR 80 183 -328 271 311 71 49 chr4 37222943 37223126 -147065536 - L2 LINE L2 -831 2483 2297 2008 104 4 0 chr4 37224284 37224552 -147064110 + AluSg SINE Alu 1 269 -41 396 0 0 0 chr4 37224559 37224603 -147064059 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 23 54 0 0 chr4 37224991 37225028 -147063634 + AT_rich Low_complexity Low_complexity 1 37 0 478 282 46 24 chr4 37225804 37226002 -147062660 + MIR SINE MIR 6 208 -54 188 264 161 11 chr4 37226651 37226738 -147061924 - MIR SINE MIR -151 111 12 237 284 149 14 chr4 37227591 37227732 -147060930 - L2 LINE L2 -5 3267 3108 22 0 0 0 chr4 37227951 37227973 -147060689 + AT_rich Low_complexity Low_complexity 1 22 0 186 225 25 0 chr4 37227978 37228018 -147060644 - MIR SINE MIR -211 51 11 719 128 0 0 chr4 37228024 37228133 -147060529 + MER30B DNA MER1_type 1 109 -81 402 332 69 40 chr4 37228137 37228523 -147060139 - L2 LINE L2 -176 3137 2731 904 226 65 36 chr4 37228543 37228791 -147059871 - MIR SINE MIR 0 262 8 195 306 47 24 chr4 37228717 37228802 -147059860 + MIR SINE MIR 7 93 -169 * 199 184 0 0 chr4 37229560 37229598 -147059064 - MIR SINE MIR -3 259 222 * 260 211 203 65 chr4 37229564 37229687 -147058975 - L2 LINE L2 -13 3300 3161 835 281 111 47 chr4 37230192 37230679 -147057983 + LTR33A LTR ERVL 6 523 0 213 366 37 0 chr4 37230723 37230805 -147057857 + MIR SINE MIR 45 129 -79 546 300 77 14 chr4 37231024 37231244 -147057418 - MIR SINE MIR -25 237 4 214 167 0 0 chr4 37231771 37231807 -147056855 + (TATATG)n Simple_repeat Simple_repeat 1 36 0 772 326 90 26 chr4 37232524 37233058 -147055604 + L1MCc LINE L1 23 590 -5833 432 230 137 14 chr4 37233063 37233202 -147055460 + MLT1A2 LTR MaLR 219 374 0 850 202 30 25 chr4 37233205 37233408 -147055254 - L1M4 LINE L1 -1099 5047 4844 2168 218 82 0 chr4 37233564 37234042 -147054620 + LTR53 LTR ERVL 2 518 -1 422 217 68 75 chr4 37235703 37235864 -147052798 + LTR50 LTR ERVL 8 167 -628 2162 110 3 10 chr4 37235879 37236188 -147052474 + AluSx SINE Alu 1 307 -5 372 232 36 9 chr4 37236489 37236601 -147052061 + LTR33A LTR ERVL 409 523 0 2305 97 0 6 chr4 37237272 37237583 -147051079 + AluSp SINE Alu 1 309 -4 29 0 0 0 chr4 37238761 37238790 -147049872 + AT_rich Low_complexity Low_complexity 1 29 0 215 400 136 7 chr4 37239065 37239220 -147049442 - L2 LINE L2 -3 3269 3095 1345 226 31 65 chr4 37239307 37239786 -147048876 + MLT1C LTR MaLR 1 463 -4 211 274 16 0 chr4 37239985 37240047 -147048615 + GA-rich Low_complexity Low_complexity 1 63 0 195 100 0 0 chr4 37240559 37240589 -147048073 + (TG)n Simple_repeat Simple_repeat 2 31 0 1476 154 138 0 chr4 37240619 37240879 -147047783 + AluSx SINE Alu 1 296 -16 2237 173 33 81 chr4 37241048 37241205 -147047457 - L1MA10 LINE L1 -1 6333 6170 2666 19 0 10 chr4 37241205 37241518 -147047144 - AluY SINE Alu -1 310 1 2237 173 33 81 chr4 37241518 37241905 -147046757 - L1MA10 LINE L1 -164 6170 5815 234 98 87 65 chr4 37241958 37242050 -147046612 + (TTTA)n Simple_repeat Simple_repeat 3 96 0 242 277 0 0 chr4 37242053 37242118 -147046544 + MER63 DNA MER1_type 686 750 -312 321 246 98 20 chr4 37242182 37242327 -147046335 - MIR SINE MIR -63 145 19 2587 99 8 5 chr4 37242467 37242842 -147045820 + L1PB1 LINE L1 5776 6151 0 218 191 44 0 chr4 37242845 37242913 -147045749 + A-rich Low_complexity Low_complexity 1 71 0 32 26 0 0 chr4 37243243 37243282 -147045380 + AT_rich Low_complexity Low_complexity 1 39 0 474 315 35 7 chr4 37244695 37244838 -147043824 + MIR SINE MIR 2 148 -114 2138 182 29 9 chr4 37244843 37245288 -147043374 + L1MA4 LINE L1 5845 6298 -2 197 379 16 0 chr4 37245310 37245434 -147043228 + MIR SINE MIR 137 262 0 542 231 8 0 chr4 37245489 37245606 -147043056 + MER45A DNA AcHobo 60 177 -1 2161 100 0 0 chr4 37246552 37246915 -147041747 - AluSc SINE Alu 0 363 1 1226 203 24 117 chr4 37247144 37247475 -147041187 - MLT1B LTR MaLR -10 380 94 2136 119 3 13 chr4 37247475 37247787 -147040875 + AluSc SINE Alu 1 309 0 1226 203 24 117 chr4 37247787 37247874 -147040788 - MLT1B LTR MaLR -296 94 1 238 263 18 0 chr4 37248045 37248102 -147040560 - L2 LINE L2 0 3272 3215 540 281 106 40 chr4 37248825 37249174 -147039488 + LTR16A1 LTR ERVL 1 372 -85 25 0 0 0 chr4 37249608 37249633 -147039029 + AT_rich Low_complexity Low_complexity 1 25 0 227 286 78 0 chr4 37250827 37250904 -147037758 + MARNA DNA Mariner 12 94 -492 1679 39 0 14 chr4 37251085 37251292 -147037370 + AluY SINE Alu 92 295 -16 381 275 7 49 chr4 37251561 37251703 -147036959 - L1ME LINE L1 -394 5837 5702 407 284 88 15 chr4 37251766 37251970 -147036692 - L1ME LINE L1 -531 5704 5486 396 299 14 54 chr4 37252040 37252318 -147036344 + L1MEc LINE L1 1401 1667 -4729 2318 276 92 48 chr4 37252640 37254091 -147034571 - L1ME LINE L1 -1748 4467 2922 5677 116 66 5 chr4 37254091 37255689 -147032973 - L1PA13 LINE L1 0 6163 4519 2318 276 92 48 chr4 37255689 37256020 -147032642 - L1ME LINE L1 -3293 2922 2607 368 259 108 8 chr4 37256096 37256355 -147032307 - L1ME LINE L1 -3992 2404 2120 3451 253 76 43 chr4 37256476 37256982 -147031680 - L1MEc LINE L1 -1602 4613 4125 270 0 0 0 chr4 37256982 37257012 -147031650 + (GTTTG)n Simple_repeat Simple_repeat 1 30 0 3451 253 76 43 chr4 37257012 37257867 -147030795 - L1MEc LINE L1 -2090 4125 3190 1467 160 44 7 chr4 37257867 37258142 -147030520 - L1PA16 LINE L1 -9 6157 5873 3451 253 76 43 chr4 37258142 37258379 -147030283 - L1MEc LINE L1 -3025 3190 2962 694 231 55 48 chr4 37258384 37258724 -147029938 - L1MEc LINE L1 -3766 2461 2146 240 245 75 19 chr4 37258857 37258963 -147029699 - L1M4 LINE L1 -3034 3112 3001 3263 189 21 20 chr4 37259059 37259977 -147028685 + L1M1 LINE L1 4684 5609 -694 * 17401 166 32 7 chr4 37259972 37262959 -147025703 + L1MA3 LINE L1 12 3071 -4494 2727 98 31 0 chr4 37262980 37263367 -147025295 - MLT2A1 LTR ERVL -45 399 1 2983 149 37 31 chr4 37263367 37264239 -147024423 + L1MA3 LINE L1 3069 3952 -3613 358 94 0 0 chr4 37264239 37264292 -147024370 - MADE1 DNA Mariner -27 53 1 4971 164 14 68 chr4 37264297 37264704 -147023958 + L1MA3 LINE L1 5588 6016 -1670 234 0 0 0 chr4 37264704 37264730 -147023932 + (TTA)n Simple_repeat Simple_repeat 3 28 0 15638 70 7 0 chr4 37264730 37267576 -147021086 - L1PA6 LINE L1 -18 6136 3275 4971 164 14 68 chr4 37267576 37268612 -147020050 + L1MA3 LINE L1 6014 6943 -743 1058 118 24 0 chr4 37268634 37268803 -147019859 - L1MA3 LINE L1 0 6305 6133 4655 136 8 6 chr4 37268803 37269579 -147019083 + L1MA3 LINE L1 6947 7724 0 1115 235 116 78 chr4 37269619 37270467 -147018195 - L1MC4a LINE L1 -1346 6462 5583 1159 211 5 0 chr4 37270569 37270778 -147017884 - MER2 DNA MER2_type -135 210 1 715 287 23 11 chr4 37270785 37271046 -147017616 - L1MC4a LINE L1 -2230 5578 5315 237 301 51 40 chr4 37271283 37271579 -147017083 - L1MC4a LINE L1 -1112 5034 4736 303 212 141 20 chr4 37272450 37272549 -147016113 - MLT1K LTR MaLR 0 588 478 406 267 111 47 chr4 37272581 37272753 -147015909 - MLT1K LTR MaLR -196 392 210 24 32 0 0 chr4 37273881 37273912 -147014750 + AT_rich Low_complexity Low_complexity 1 31 0 187 243 233 0 chr4 37273925 37274028 -147014634 - MIR SINE MIR -6 256 130 220 304 22 22 chr4 37274286 37274378 -147014284 - MIR SINE MIR -47 215 124 521 357 15 0 chr4 37275330 37275526 -147013136 + MIR SINE MIR 48 246 -16 1746 137 32 7 chr4 37276018 37276295 -147012367 + AluSx SINE Alu 1 284 -28 318 371 16 21 chr4 37276476 37276662 -147012000 + L2 LINE L2 3125 3309 -4 2317 84 3 0 chr4 37276871 37277181 -147011481 + AluY SINE Alu 1 311 0 254 103 0 0 chr4 37277288 37277327 -147011335 - MADE1 DNA Mariner -41 39 1 22 35 0 0 chr4 37277492 37277521 -147011141 + AT_rich Low_complexity Low_complexity 1 29 0 2414 189 37 2 chr4 37277733 37278221 -147010441 - LTR22 LTR ERVK -4 505 1 5997 200 29 10 chr4 37278298 37279816 -147008846 + L1P4 LINE L1 3947 5501 -665 2289 173 2 18 chr4 37279819 37280212 -147008450 + Ricksha DNA DNA 333 719 -1327 3103 185 5 10 chr4 37280214 37280803 -147007859 + Ricksha DNA DNA 2274 3214 -13 261 178 0 0 chr4 37280805 37280850 -147007812 - L1MB1 LINE L1 -199 5990 5946 27 0 0 0 chr4 37281432 37281459 -147007203 + AT_rich Low_complexity Low_complexity 1 27 0 186 327 19 39 chr4 37282012 37282116 -147006546 + MIR SINE MIR 5 106 -156 1225 224 81 48 chr4 37282665 37283085 -147005577 + LTR47B LTR ERVL 3 436 -7 814 293 39 4 chr4 37283278 37283510 -147005152 + MIR SINE MIR 23 262 0 21 36 0 0 chr4 37283839 37283867 -147004795 + AT_rich Low_complexity Low_complexity 1 28 0 3838 289 43 29 chr4 37284884 37286494 -147002168 + L1PBa LINE L1 7 1640 -5223 * 5485 179 31 18 chr4 37286464 37287769 -147000893 + L1PB3 LINE L1 653 1975 -4875 665 164 0 0 chr4 37287778 37287888 -147000774 - MSTA LTR MaLR -318 110 1 234 114 0 0 chr4 37287888 37287923 -147000739 + L1PB3 LINE L1 2604 2638 -4211 * 11250 205 31 12 chr4 37287913 37288874 -146999788 + L1PB3 LINE L1 3002 3943 -2914 2093 126 51 28 chr4 37288874 37289230 -146999432 + THE1B LTR MaLR 1 364 0 11250 205 31 12 chr4 37289230 37292045 -146996617 + L1PB3 LINE L1 3943 6850 -7 22 0 0 0 chr4 37292485 37292507 -146996155 + AT_rich Low_complexity Low_complexity 1 22 0 575 241 186 8 chr4 37292907 37293143 -146995519 - LTR16A1 LTR ERVL -2 455 178 216 97 0 0 chr4 37293177 37293208 -146995454 + (GA)n Simple_repeat Simple_repeat 1 31 0 253 139 0 0 chr4 37293238 37293274 -146995388 - LTR16A1 LTR ERVL -421 36 1 2074 96 20 27 chr4 37293691 37293992 -146994670 + AluY SINE Alu 1 299 -12 1803 168 0 3 chr4 37295056 37295348 -146993314 + AluSx SINE Alu 1 291 -21 23 54 0 0 chr4 37295734 37295771 -146992891 + AT_rich Low_complexity Low_complexity 1 37 0 249 33 0 0 chr4 37296732 37296762 -146991900 + (A)n Simple_repeat Simple_repeat 1 30 0 1259 211 33 0 chr4 37296888 37297187 -146991475 - MER33 DNA MER1_type -14 310 2 315 49 0 0 chr4 37297325 37297366 -146991296 + (CA)n Simple_repeat Simple_repeat 2 42 0 41 0 0 0 chr4 37298049 37298090 -146990572 + AT_rich Low_complexity Low_complexity 1 41 0 2574 61 0 0 chr4 37298882 37299192 -146989470 + AluY SINE Alu 2 311 0 201 152 0 0 chr4 37300100 37300133 -146988529 + (CA)n Simple_repeat Simple_repeat 2 34 0 407 298 94 21 chr4 37300532 37300723 -146987939 + L3 LINE CR1 1209 1413 -164 5415 66 18 8 chr4 37300834 37301557 -146987105 - HERVE LTR ERV1 -5904 992 263 691 93 0 46 chr4 37301550 37301658 -146987004 - HERVE LTR ERV1 -7428 385 283 * 1506 207 0 0 chr4 37301658 37301988 -146986674 - AluY SINE Alu 0 332 3 1400 220 3 14 chr4 37301990 37302286 -146986376 - HERVE LTR ERV1 -6603 293 1 2524 47 38 0 chr4 37302412 37302731 -146985931 + L1PA3 LINE L1 5824 6154 -1 31 26 0 0 chr4 37302731 37302769 -146985893 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr4 37303562 37303585 -146985077 + AT_rich Low_complexity Low_complexity 1 23 0 506 16 16 0 chr4 37303746 37303809 -146984853 + (TCTA)n Simple_repeat Simple_repeat 1 64 0 393 342 89 21 chr4 37304097 37304287 -146984375 - L2 LINE L2 0 3272 3070 5326 145 38 18 chr4 37305601 37306168 -146982494 - L1MA8 LINE L1 0 6291 5694 2829 89 54 12 chr4 37306168 37306594 -146982068 + MLT2A1 LTR ERVL 1 444 0 5326 145 38 18 chr4 37306594 37307021 -146981641 - L1MA8 LINE L1 -597 5694 5277 2600 11 0 0 chr4 37307374 37307698 -146980964 - AluY SINE Alu 0 326 3 2001 123 0 3 chr4 37307701 37307994 -146980668 - Harlequin LTR ERV1 -6604 292 1 1949 182 93 30 chr4 37307994 37308455 -146980207 - LTR2B LTR ERV1 0 490 1 1058 228 28 4 chr4 37309121 37309376 -146979286 + MLT1F1 LTR MaLR 307 567 0 2546 142 33 24 chr4 37309712 37310136 -146978526 + Tigger2a DNA MER2_type 1 428 -6 21 0 0 0 chr4 37310816 37310837 -146977825 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 37312202 37312223 -146976439 + AT_rich Low_complexity Low_complexity 1 21 0 196 238 12 12 chr4 37312239 37312319 -146976343 + (TA)n Simple_repeat Simple_repeat 2 81 0 492 292 111 37 chr4 37312541 37313388 -146975274 - L1M4 LINE L1 -846 5300 4391 2708 133 12 9 chr4 37313407 37313834 -146974828 - LTR9B LTR ERV1 -86 558 131 1247 89 78 0 chr4 37313832 37314012 -146974650 - LTR9B LTR ERV1 -450 194 1 * 9560 114 17 11 chr4 37314013 37316529 -146972133 - HUERS-P3b LTR ERV1 -7 7411 4714 5533 92 6 43 chr4 37316521 37317354 -146971308 - HUERS-P3b LTR ERV1 -3544 3874 3073 * 2097 171 67 3 chr4 37317354 37317729 -146970933 + LTR8 LTR ERV1 1 399 -292 6816 117 18 9 chr4 37317729 37319488 -146969174 - HUERS-P3b LTR ERV1 -4760 2658 747 2181 58 54 0 chr4 37319494 37319772 -146968890 - AluY SINE Alu -18 293 1 693 155 39 71 chr4 37319788 37319818 -146968844 - HUERS-P3b LTR ERV1 -6859 559 530 2406 59 0 7 chr4 37319818 37320124 -146968538 - AluY SINE Alu -7 304 1 693 155 39 71 chr4 37320124 37320248 -146968414 - HUERS-P3b LTR ERV1 -6888 530 410 379 206 41 52 chr4 37320252 37320349 -146968313 - HUERS-P3b LTR ERV1 -7322 96 1 908 165 13 0 chr4 37320349 37320507 -146968155 - LTR9B LTR ERV1 0 644 485 370 330 21 0 chr4 37320535 37320723 -146967939 - L1M4 LINE L1 -1778 4368 4177 292 266 206 16 chr4 37321383 37321567 -146967095 + MIR SINE MIR 44 262 0 14658 225 35 8 chr4 37322701 37328775 -146959887 + L1PA15 LINE L1 2 6814 -2 190 313 15 30 chr4 37329355 37329422 -146959240 - MIR SINE MIR -109 153 88 30 59 0 0 chr4 37329458 37329509 -146959153 + AT_rich Low_complexity Low_complexity 1 51 0 643 257 116 33 chr4 37329941 37330182 -146958480 + LTR40a LTR ERVL 257 517 -2 301 328 50 8 chr4 37330195 37330314 -146958348 + MLT1J LTR MaLR 86 209 -302 218 316 188 26 chr4 37330493 37330610 -146958052 - L2 LINE L2 0 3272 3137 1193 325 102 5 chr4 37330686 37331252 -146957410 + L2 LINE L2 1054 1674 -1640 383 370 59 31 chr4 37333621 37333975 -146954687 - L2 LINE L2 -74 3198 2835 2538 7 0 0 chr4 37334255 37334528 -146954134 - AluYb8 SINE Alu -11 307 35 202 83 0 56 chr4 37335083 37335119 -146953543 + L2 LINE L2 3020 3053 -260 825 245 5 42 chr4 37335361 37335577 -146953085 - MIR SINE MIR -10 252 45 246 356 33 0 chr4 37335684 37335774 -146952888 - MIR SINE MIR -83 125 33 428 351 5 22 chr4 37335963 37336185 -146952477 - MLT2E LTR ERVL 0 628 411 400 273 15 45 chr4 37336248 37336380 -146952282 - MLT2E LTR ERVL -469 159 32 928 238 80 27 chr4 37336420 37336851 -146951811 + MLT1E LTR MaLR 20 569 -24 1759 154 57 13 chr4 37337444 37337743 -146950919 + AluJo SINE Alu 1 312 0 417 293 76 57 chr4 37338317 37338686 -146949976 + MLT1I LTR MaLR 1 376 -33 1061 318 134 26 chr4 37339897 37340823 -146947839 - L2 LINE L2 -215 3057 2029 316 301 33 104 chr4 37344395 37344694 -146943968 + L2 LINE L2 2578 2855 -459 243 330 85 17 chr4 37344772 37344890 -146943772 + MLT1J2 LTR MaLR 83 208 -242 916 9 0 0 chr4 37344928 37345034 -146943628 + L1PA4 LINE L1 6047 6152 -3 350 333 14 35 chr4 37345230 37345374 -146943288 + L2 LINE L2 2897 3037 -235 22 56 0 0 chr4 37346017 37346053 -146942609 + AT_rich Low_complexity Low_complexity 1 36 0 216 0 0 0 chr4 37346230 37346254 -146942408 + (TTA)n Simple_repeat Simple_repeat 2 25 0 294 50 0 0 chr4 37346946 37346986 -146941676 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 655 295 68 57 chr4 37346988 37347357 -146941305 - L2 LINE L2 -15 3298 2926 374 318 95 7 chr4 37347651 37347799 -146940863 - MLT1J2 LTR MaLR -18 432 272 430 251 51 55 chr4 37348087 37348322 -146940340 - L1ME3A LINE L1 -219 5951 5718 349 216 144 0 chr4 37348994 37349091 -146939571 - L1ME3A LINE L1 -584 5578 5468 512 117 26 0 chr4 37349276 37349353 -146939309 - THE1C LTR MaLR -296 79 1 22 70 0 0 chr4 37349994 37350037 -146938625 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr4 37350307 37350329 -146938333 + AT_rich Low_complexity Low_complexity 1 22 0 5031 133 48 10 chr4 37350976 37351927 -146936735 - L1PB3 LINE L1 -1 6153 5171 4100 219 22 5 chr4 37351922 37352749 -146935913 + L1PBb LINE L1 130 970 -5234 * 306 262 12 0 chr4 37352963 37353047 -146935615 + (TA)n Simple_repeat Simple_repeat 1 85 0 262 354 0 0 chr4 37353358 37353440 -146935222 + MIR3 SINE MIR 82 163 -45 33898 83 5 14 chr4 37353670 37354493 -146934169 - L1PA6 LINE L1 -10 6144 5315 2428 87 0 0 chr4 37354493 37354803 -146933859 + AluY SINE Alu 1 310 -1 33898 83 5 14 chr4 37354803 37359564 -146929098 - L1PA6 LINE L1 -839 5315 606 332 272 79 90 chr4 37359593 37359872 -146928790 + L2 LINE L2 3025 3300 -13 545 300 110 65 chr4 37360507 37360924 -146927738 - MLT1J LTR MaLR -75 436 1 1337 223 95 54 chr4 37361537 37362034 -146926628 + LTR40a LTR ERVL 3 519 0 318 87 0 0 chr4 37363438 37363484 -146925178 + (TG)n Simple_repeat Simple_repeat 1 46 0 27 0 0 0 chr4 37363774 37363801 -146924861 + AT_rich Low_complexity Low_complexity 1 27 0 364 262 191 49 chr4 37364747 37364972 -146923690 + MIR SINE MIR 3 259 -3 2590 158 14 9 chr4 37365377 37365801 -146922861 - MSTB LTR MaLR 0 426 1 839 166 13 0 chr4 37366905 37367056 -146921606 - L1PA16 LINE L1 -4 6162 6010 2115 116 0 3 chr4 37367456 37367741 -146920921 + AluSx SINE Alu 17 300 -12 235 244 122 37 chr4 37367934 37368016 -146920646 - L2 LINE L2 -5 3267 3179 323 294 86 25 chr4 37370021 37370184 -146918478 - MIR SINE MIR -53 209 37 551 323 85 38 chr4 37370577 37370979 -146917683 - L2 LINE L2 -36 3277 2804 805 294 50 32 chr4 37370992 37371332 -146917330 - LTR16B LTR ERVL -24 440 95 799 207 148 17 chr4 37371451 37371688 -146916974 - L2 LINE L2 -510 2804 2537 200 244 0 0 chr4 37372221 37372262 -146916400 + T-rich Low_complexity Low_complexity 1 41 0 298 348 35 0 chr4 37372381 37372496 -146916166 + MLT1H LTR MaLR 12 130 -419 2961 3 0 0 chr4 37372918 37373236 -146915426 + AluYb8 SINE Alu 1 318 0 2840 72 5 8 chr4 37373236 37373290 -146915372 + L1P1 LINE L1 5294 5347 -808 4026 24 0 0 chr4 37373290 37373758 -146914904 - L1PA3 LINE L1 -1 6154 5687 2840 72 5 8 chr4 37373758 37374094 -146914568 + L1PA3 LINE L1 5347 5683 -472 414 251 80 31 chr4 37374216 37374379 -146914283 + MIR SINE MIR 92 262 0 295 326 11 22 chr4 37375798 37375976 -146912686 + Harlequin LTR ERV1 118 293 -6603 782 288 13 13 chr4 37375978 37376307 -146912355 + AluY SINE Alu 3 331 0 691 93 0 46 chr4 37376307 37376415 -146912247 + HERVE LTR ERV1 283 385 -7428 * 8526 59 22 17 chr4 37376408 37377560 -146911102 + HERVE LTR ERV1 263 1419 -5477 * 30334 66 18 13 chr4 37377554 37382387 -146906275 + HERVE LTR ERV1 2054 6896 0 1988 169 91 41 chr4 37382388 37382849 -146905813 + LTR2B LTR ERV1 7 490 0 298 306 161 33 chr4 37383702 37383882 -146904780 - MIR SINE MIR -51 211 9 383 307 64 14 chr4 37384694 37384834 -146903828 - MIR SINE MIR -7 255 109 281 331 88 53 chr4 37384935 37385198 -146903464 + L2 LINE L2 3041 3312 -1 287 136 85 17 chr4 37385238 37385297 -146903365 - MER67D LTR ERV1 -4 510 448 1125 170 85 18 chr4 37385376 37385600 -146903062 - MER67C LTR ERV1 -307 403 165 680 159 7 36 chr4 37385615 37385775 -146902887 + FLAM_C SINE Alu 7 143 0 812 172 0 0 chr4 37385775 37385926 -146902736 - MER67D LTR ERV1 -363 151 1 627 285 89 26 chr4 37385969 37386271 -146902391 + LTR16B LTR ERVL 97 417 -47 3895 143 22 2 chr4 37386272 37386907 -146901755 + MER39B LTR ERV1 2 649 -4 194 229 14 0 chr4 37386998 37387068 -146901594 + GA-rich Low_complexity Low_complexity 3 73 0 183 42 0 0 chr4 37387085 37387109 -146901553 + (CA)n Simple_repeat Simple_repeat 2 25 0 22 0 0 0 chr4 37387861 37387883 -146900779 + AT_rich Low_complexity Low_complexity 1 22 0 403 262 29 35 chr4 37388536 37388708 -146899954 - L2 LINE L2 0 3313 3143 323 287 23 47 chr4 37389732 37389861 -146898801 + MIR SINE MIR 47 172 -90 2118 94 13 13 chr4 37389861 37390170 -146898492 - AluSc SINE Alu 0 309 1 2322 104 0 0 chr4 37390593 37390900 -146897762 + AluSg SINE Alu 1 307 -3 288 0 0 0 chr4 37391760 37391792 -146896870 + (CA)n Simple_repeat Simple_repeat 1 32 0 289 273 111 10 chr4 37391822 37391921 -146896741 - MIR SINE MIR -149 113 5 183 42 0 0 chr4 37393508 37393532 -146895130 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 21 36 0 0 chr4 37394075 37394103 -146894559 + AT_rich Low_complexity Low_complexity 1 28 0 285 98 0 0 chr4 37394134 37394175 -146894487 + (CA)n Simple_repeat Simple_repeat 2 42 0 290 331 181 0 chr4 37394982 37395109 -146893553 + MER5A DNA MER1_type 34 183 -6 211 335 119 23 chr4 37395188 37395364 -146893298 - MIR SINE MIR -29 233 41 757 346 116 31 chr4 37395389 37396102 -146892560 - L3 LINE CR1 -61 1516 743 2620 142 23 9 chr4 37397324 37397762 -146890900 - L1M2 LINE L1 -550 5741 5298 955 142 20 0 chr4 37397764 37397963 -146890699 + L1MA7 LINE L1 6099 6312 0 402 277 8 39 chr4 37397971 37398101 -146890561 - MER58B DNA MER1_type 0 341 216 22 0 0 0 chr4 37398432 37398454 -146890208 + AT_rich Low_complexity Low_complexity 1 22 0 53 78 0 0 chr4 37398636 37398752 -146889910 + AT_rich Low_complexity Low_complexity 1 116 0 275 331 26 52 chr4 37399442 37399596 -146889066 + MER5A DNA MER1_type 40 189 0 2606 258 55 1 chr4 37401279 37402170 -146886492 + L1M4 LINE L1 3016 3954 -2192 * 6212 221 50 22 chr4 37402166 37402715 -146885947 + L1MC/D LINE L1 3084 3616 -2623 2358 115 19 19 chr4 37402715 37403079 -146885583 - THE1B LTR MaLR 0 364 1 6212 221 50 22 chr4 37403079 37404827 -146883835 + L1MC/D LINE L1 3616 5570 -669 * 31065 114 14 56 chr4 37404795 37411210 -146877452 + L1PA7 LINE L1 12 6150 -4 1970 130 0 7 chr4 37411205 37411513 -146877149 + L1PB4 LINE L1 5476 5781 -375 * 629 64 41 35 chr4 37411521 37411684 -146876978 + (TATAA)n Simple_repeat Simple_repeat 1 167 -6 1783 209 14 3 chr4 37411684 37412043 -146876619 + L1PB4 LINE L1 5783 6145 -11 629 64 41 35 chr4 37412043 37412051 -146876611 + (TATAA)n Simple_repeat Simple_repeat 167 173 0 27 29 0 0 chr4 37412051 37412085 -146876577 + AT_rich Low_complexity Low_complexity 1 34 0 25 0 0 0 chr4 37412285 37412310 -146876352 + AT_rich Low_complexity Low_complexity 1 25 0 244 233 0 0 chr4 37413291 37413351 -146875311 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 243 326 33 11 chr4 37413570 37413662 -146875000 - MIR SINE MIR -87 175 82 181 250 0 0 chr4 37414987 37415031 -146873631 - L2 LINE L2 -8 3305 3262 717 269 65 29 chr4 37415053 37415298 -146873364 + MLT1J LTR MaLR 1 254 -257 726 181 7 28 chr4 37415319 37415463 -146873199 + FLAM_C SINE Alu 1 141 -2 596 234 108 0 chr4 37415564 37415722 -146872940 - MER58A DNA MER1_type -49 175 1 375 297 25 69 chr4 37415722 37415920 -146872742 + MLT1J LTR MaLR 323 511 0 327 326 93 50 chr4 37416027 37416594 -146872068 - L2 LINE L2 -188 3084 2403 213 368 53 0 chr4 37416612 37416726 -146871936 + MIR SINE MIR 20 139 -123 755 250 0 12 chr4 37416777 37416945 -146871717 + MLT1A2 LTR MaLR 21 186 -188 199 172 17 17 chr4 37416955 37417013 -146871649 + CT-rich Low_complexity Low_complexity 4 61 0 321 272 14 95 chr4 37417019 37417166 -146871496 + MLT1A2 LTR MaLR 194 328 -68 716 166 20 190 chr4 37417674 37417800 -146870862 - MER2 DNA MER2_type -135 210 64 4475 114 13 10 chr4 37417800 37418491 -146870171 - L1PA11 LINE L1 -7 6167 5475 716 166 20 190 chr4 37418491 37418515 -146870147 - MER2 DNA MER2_type -281 64 38 14639 154 6 24 chr4 37418515 37418620 -146870042 - L1PA10 LINE L1 0 6168 6063 2323 114 50 8 chr4 37418620 37418980 -146869682 - THE1C LTR MaLR 0 375 1 10031 123 40 3 chr4 37418980 37420501 -146868161 - THE1C-int LTR MaLR 0 1580 3 2498 121 8 19 chr4 37420503 37420882 -146867780 - THE1C LTR MaLR 0 375 1 14639 154 6 24 chr4 37420882 37424277 -146864385 - L1PA10 LINE L1 -105 6063 2706 716 166 20 190 chr4 37424277 37424378 -146864284 - MER2 DNA MER2_type -307 38 1 35 0 0 0 chr4 37424382 37424417 -146864245 + AT_rich Low_complexity Low_complexity 1 35 0 247 345 28 100 chr4 37424698 37425017 -146863645 + L2 LINE L2 2965 3260 -12 489 60 24 24 chr4 37425273 37425356 -146863306 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 246 229 57 14 chr4 37425380 37425450 -146863212 + Zaphod DNA AcHobo 409 481 -3550 452 300 17 44 chr4 37425603 37425896 -146862766 - L1MCb LINE L1 -4924 1630 1346 255 217 0 0 chr4 37425992 37426052 -146862610 + (TA)n Simple_repeat Simple_repeat 2 61 0 5584 191 68 26 chr4 37426181 37427486 -146861176 - L1MC3 LINE L1 -15 7770 6411 469 236 71 57 chr4 37427618 37427898 -146860764 + MER34B LTR ERV1 279 562 -3 1824 245 29 46 chr4 37427902 37428764 -146859898 - L1MCb LINE L1 -4852 1193 553 1554 241 43 72 chr4 37428826 37429411 -146859251 - L1MCb LINE L1 -5475 570 3 21 0 0 0 chr4 37429659 37429680 -146858982 + AT_rich Low_complexity Low_complexity 1 21 0 2346 97 0 0 chr4 37429982 37430290 -146858372 + AluSx SINE Alu 1 308 -4 185 313 62 25 chr4 37430430 37430510 -146858152 - MIR SINE MIR -106 156 74 25 51 0 0 chr4 37430548 37430587 -146858075 + AT_rich Low_complexity Low_complexity 1 39 0 1873 136 0 7 chr4 37431668 37431947 -146856715 - AluSx SINE Alu -20 292 16 1782 177 82 19 chr4 37432561 37432940 -146855722 - MER4A LTR ERV1 -1 663 261 576 141 0 10 chr4 37432940 37433039 -146855623 - MER4A LTR ERV1 -566 98 1 600 206 46 105 chr4 37433693 37433912 -146854750 - MER63A DNA MER1_type 0 210 5 3455 170 26 5 chr4 37434599 37435262 -146853400 - L1MC1 LINE L1 0 6333 5657 362 339 28 34 chr4 37435482 37435659 -146853003 + L2 LINE L2 2886 3061 -252 700 242 6 12 chr4 37436519 37436680 -146851982 + MER5B DNA MER1_type 3 162 -16 268 221 65 0 chr4 37436850 37436927 -146851735 + HAL1 LINE L1 2259 2340 -167 2367 220 44 22 chr4 37437540 37437797 -146850865 - MLT2B1 LTR ERVL -8 512 262 4328 91 3 84 chr4 37437797 37438520 -146850142 - MER4A LTR ERV1 0 664 1 2367 220 44 22 chr4 37438520 37438763 -146849899 - MLT2B1 LTR ERVL -258 262 1 689 313 33 0 chr4 37438806 37439017 -146849645 - MIR SINE MIR 0 262 45 2300 63 0 3 chr4 37439019 37439346 -146849316 + AluY SINE Alu 1 326 0 5326 145 38 18 chr4 37439699 37440126 -146848536 + L1MA8 LINE L1 5277 5694 -597 2829 89 54 12 chr4 37440126 37440552 -146848110 - MLT2A1 LTR ERVL 0 444 1 5326 145 38 18 chr4 37440552 37441119 -146847543 + L1MA8 LINE L1 5694 6291 0 393 342 89 21 chr4 37442432 37442622 -146846040 + L2 LINE L2 3070 3272 0 506 16 16 0 chr4 37442910 37442973 -146845689 + (TAGA)n Simple_repeat Simple_repeat 1 64 0 23 0 0 0 chr4 37443134 37443157 -146845505 + AT_rich Low_complexity Low_complexity 1 23 0 31 26 0 0 chr4 37443950 37443988 -146844674 + AT_rich Low_complexity Low_complexity 1 38 0 629 13 13 0 chr4 37443988 37444066 -146844596 - L1PA3 LINE L1 -1 6154 6076 785 227 17 11 chr4 37444752 37444928 -146843734 - MLT1C LTR MaLR 0 467 291 783 158 82 53 chr4 37444924 37445095 -146843567 - MLT1C LTR MaLR -286 181 6 * 295 324 7 56 chr4 37445118 37445260 -146843402 + MIR3 SINE MIR 72 206 -2 441 0 0 0 chr4 37445487 37445536 -146843126 + (TG)n Simple_repeat Simple_repeat 2 50 0 1404 84 0 0 chr4 37445537 37445715 -146842947 - AluY SINE Alu -133 178 1 854 101 101 0 chr4 37446111 37446250 -146842412 + AluSg/x SINE Alu 159 311 -1 3347 167 15 2 chr4 37446267 37446871 -146841791 + L1MB3 LINE L1 5548 6159 -24 2242 109 0 10 chr4 37446931 37447235 -146841427 + AluSq SINE Alu 1 301 -12 361 115 0 0 chr4 37447243 37447304 -146841358 + L1MB3 LINE L1 6095 6155 -28 2502 264 58 9 chr4 37447311 37448290 -146840372 + L1ME1 LINE L1 2705 3731 -2415 3542 95 2 0 chr4 37448500 37448986 -146839676 - L1PA12 LINE L1 -3 6165 5679 1903 252 50 25 chr4 37448988 37449694 -146838968 + L1ME1 LINE L1 3753 4475 -1671 10673 24 7 1 chr4 37449709 37451743 -146836919 - L1PA4 LINE L1 -3 6152 4111 9405 33 1 0 chr4 37451743 37452894 -146835768 + L1PA4 LINE L1 2957 4108 -2038 3034 278 71 31 chr4 37454531 37455852 -146832810 - L2 LINE L2 -58 3255 1888 524 0 0 0 chr4 37457526 37457586 -146831076 - L1P1 LINE L1 -375 5780 5721 * 635 290 36 0 chr4 37457584 37457832 -146830830 + L1ME1 LINE L1 4461 4717 -1429 910 255 88 17 chr4 37457842 37458136 -146830526 + L1ME1 LINE L1 5838 6152 -14 284 356 39 11 chr4 37458134 37458314 -146830348 + L1ME LINE L1 5458 5642 -522 * 956 220 28 60 chr4 37458429 37458858 -146829804 + L1MC5 LINE L1 6875 7231 -730 746 194 0 8 chr4 37458869 37459003 -146829659 + FLAM_A SINE Alu 1 133 0 407 278 71 17 chr4 37459033 37459370 -146829292 + L1MC5 LINE L1 7259 7510 -451 24 32 0 0 chr4 37459465 37459496 -146829166 + AT_rich Low_complexity Low_complexity 1 31 0 230 288 48 8 chr4 37460323 37460448 -146828214 + L1MDa LINE L1 1300 1429 -5111 845 150 0 14 chr4 37460461 37460601 -146828061 - FLAM_C SINE Alu 0 143 6 419 325 62 29 chr4 37460766 37461009 -146827653 + L1MDa LINE L1 1695 1945 -4776 1324 124 0 25 chr4 37461016 37461218 -146827444 - AluSg/x SINE Alu -19 291 95 815 119 56 0 chr4 37461221 37461347 -146827315 - AluSq/x SINE Alu -180 133 1 460 253 118 0 chr4 37461370 37461540 -146827122 + L1MDa LINE L1 1953 2142 -4579 340 321 95 24 chr4 37461544 37462039 -146826623 + L1MDa LINE L1 2189 2718 -4003 1149 190 93 8 chr4 37462040 37462287 -146826375 + MLT1E3 LTR MaLR 356 623 -1 598 238 38 22 chr4 37462295 37462480 -146826182 + L1ME3A LINE L1 5744 5931 -239 1445 228 6 10 chr4 37462839 37463150 -146825512 + AluJo SINE Alu 1 310 -2 3539 194 87 8 chr4 37464526 37465191 -146823471 - MER21B LTR ERV1 -92 771 45 2104 123 14 0 chr4 37465191 37465484 -146823178 + AluSx SINE Alu 1 297 -15 3539 194 87 8 chr4 37465484 37465533 -146823129 - MER21B LTR ERV1 -818 45 1 1479 141 129 25 chr4 37465938 37466264 -146822398 - MER46B DNA MER2_type -1 235 1 408 71 0 0 chr4 37466264 37466320 -146822342 + (TA)n Simple_repeat Simple_repeat 1 56 0 1445 197 33 16 chr4 37466607 37466911 -146821751 - AluJo SINE Alu -3 309 1 509 296 111 18 chr4 37466997 37467277 -146821385 - MER90 LTR ERV1 -58 517 212 284 308 110 14 chr4 37467903 37468049 -146820613 + MIR SINE MIR 53 212 -50 2261 113 10 0 chr4 37468328 37468637 -146820025 + AluSx SINE Alu 1 312 0 426 303 53 43 chr4 37469024 37469324 -146819338 + MARNA DNA Mariner 78 380 -206 22 35 0 0 chr4 37469579 37469608 -146819054 + AT_rich Low_complexity Low_complexity 1 29 0 462 18 0 0 chr4 37470437 37470492 -146818170 + (TA)n Simple_repeat Simple_repeat 2 56 0 416 122 27 0 chr4 37470534 37470608 -146818054 - L1MB1 LINE L1 0 6168 6093 2272 157 27 7 chr4 37470629 37471037 -146817625 + L1MB1 LINE L1 5486 5901 -267 2508 86 5 76 chr4 37471047 37471377 -146817285 + MER48 LTR ERV1 10 307 -80 2284 75 0 0 chr4 37471377 37471672 -146816990 + AluY SINE Alu 2 296 -15 2508 86 5 76 chr4 37471672 37471748 -146816914 + MER48 LTR ERV1 307 387 0 981 205 5 0 chr4 37471750 37471935 -146816727 + L1MB1 LINE L1 5903 6088 -80 2306 165 31 13 chr4 37472435 37472990 -146815672 - L1MA4A LINE L1 -20 6283 5658 434 151 93 0 chr4 37473118 37473204 -146815458 + MER81 DNA DNA 21 114 0 1514 122 7 28 chr4 37473443 37473751 -146814911 + THE1B LTR MaLR 1 364 0 11582 92 5 10 chr4 37473751 37475028 -146813634 + THE1B-int LTR MaLR 1 1270 -310 2808 13 0 0 chr4 37475028 37475334 -146813328 + AluYb8 SINE Alu 1 306 -12 11582 92 5 10 chr4 37475334 37475637 -146813025 + THE1B-int LTR MaLR 1270 1573 -7 2087 135 48 22 chr4 37475643 37475998 -146812664 + THE1B LTR MaLR 1 364 0 381 301 10 70 chr4 37476015 37476214 -146812448 + L1ME2 LINE L1 5720 5906 -258 216 353 173 0 chr4 37476343 37476493 -146812169 - MIR SINE MIR -16 246 71 1336 230 40 9 chr4 37476709 37477217 -146811445 + MLT1E LTR MaLR 26 593 0 706 229 136 63 chr4 37477477 37477809 -146810853 - LTR18A LTR ERVL -1 356 1 240 257 44 26 chr4 37478203 37478316 -146810346 - MER103 DNA DNA -43 123 9 810 333 75 22 chr4 37478840 37479255 -146809407 + L2 LINE L2 2876 3312 -1 1557 243 44 30 chr4 37479300 37479897 -146808765 + L1ME1 LINE L1 3821 4425 -1721 1379 191 24 42 chr4 37479868 37480006 -146808656 + L1MA1 LINE L1 3367 3506 -2640 * 2289 81 13 29 chr4 37480006 37480313 -146808349 + AluY SINE Alu 1 302 -9 1379 191 24 42 chr4 37480313 37480509 -146808153 + L1MA1 LINE L1 3506 3695 -2451 6270 134 32 8 chr4 37480522 37482142 -146806520 + L1MA1 LINE L1 4639 6298 -4 2912 257 31 24 chr4 37482160 37482361 -146806301 + L1ME1 LINE L1 4373 4571 -1595 2007 28 36 0 chr4 37482361 37482608 -146806054 - L1PA5 LINE L1 -4 6150 5895 2912 257 31 24 chr4 37482608 37484142 -146804520 + L1ME1 LINE L1 4571 6122 -44 506 269 25 6 chr4 37484030 37484190 -146804472 + L1MA10 LINE L1 6169 6331 -3 * 330 204 32 32 chr4 37484319 37484412 -146804250 + L1MC4 LINE L1 6613 6705 -1337 833 200 28 0 chr4 37484448 37484593 -146804069 + MLT1A1 LTR MaLR 145 293 -72 237 33 0 0 chr4 37484595 37484625 -146804037 + (GA)n Simple_repeat Simple_repeat 1 30 0 1766 137 0 0 chr4 37485144 37485392 -146803270 - AluSx SINE Alu -16 296 49 211 346 58 50 chr4 37485511 37485596 -146803066 - L2 LINE L2 -219 3053 2970 1885 192 14 27 chr4 37485596 37485966 -146802696 + MLT1A1 LTR MaLR 1 365 0 211 346 58 50 chr4 37485966 37486120 -146802542 - L2 LINE L2 -302 2970 2812 436 298 31 37 chr4 37486368 37486529 -146802133 - LTR16A LTR ERVL -144 306 147 435 374 75 10 chr4 37486603 37487015 -146801647 - LTR16A LTR ERVL -3 447 9 1055 119 0 0 chr4 37487045 37487196 -146801466 - AluSp/q SINE Alu 0 313 163 239 308 13 0 chr4 37489872 37489950 -146798712 + MLT1L LTR MaLR 1 79 -536 308 227 159 101 chr4 37490599 37490876 -146797786 + L2 LINE L2 3021 3313 0 2128 125 7 0 chr4 37491015 37491311 -146797351 + AluSq SINE Alu 1 298 -15 9266 102 8 4 chr4 37491599 37492881 -146795781 + HSMAR1 DNA Mariner 1 1287 0 345 275 55 0 chr4 37492888 37492997 -146795665 + MIR SINE MIR 101 215 -47 362 264 0 0 chr4 37493017 37493108 -146795554 - MIR SINE MIR -3 259 169 414 309 55 25 chr4 37493663 37493864 -146794798 + MIR SINE MIR 2 208 -54 2338 71 0 0 chr4 37494143 37494438 -146794224 + AluY SINE Alu 1 295 -16 2411 120 66 20 chr4 37495456 37495676 -146792986 - MSTA LTR MaLR 0 428 220 2009 92 7 28 chr4 37495676 37495959 -146792703 - AluSq SINE Alu -21 292 16 2411 120 66 20 chr4 37495959 37496147 -146792515 - MSTA LTR MaLR -208 220 1 238 299 60 26 chr4 37496477 37496594 -146792068 + MLT1A1 LTR MaLR 4 124 -333 * 290 177 32 0 chr4 37496581 37496643 -146792019 + MLT1A1 LTR MaLR 292 355 -10 301 262 120 71 chr4 37496670 37496853 -146791809 - HAL1b LINE L1 -411 937 746 8587 93 0 3 chr4 37497848 37499885 -146788777 + L1PA7 LINE L1 4103 6154 0 612 84 0 12 chr4 37499887 37499970 -146788692 + THE1B LTR MaLR 234 315 -49 1272 240 108 68 chr4 37501079 37501624 -146787038 - MLT1F1 LTR MaLR 0 567 1 249 245 0 0 chr4 37501768 37501817 -146786845 - L2 LINE L2 -12 3260 3212 300 318 18 0 chr4 37501901 37502011 -146786651 - MLT1J LTR MaLR 0 511 400 185 304 36 0 chr4 37502822 37502878 -146785784 - MIR SINE MIR -104 104 47 3780 140 28 10 chr4 37503006 37503659 -146785003 + MER39 LTR ERV1 3 707 0 257 334 0 2 chr4 37503781 37503866 -146784796 - MIR SINE MIR -83 125 42 27 29 0 0 chr4 37504800 37504834 -146783828 + AT_rich Low_complexity Low_complexity 1 34 0 405 115 23 58 chr4 37505378 37505465 -146783197 + L1MA9 LINE L1 6095 6178 -134 2422 115 34 14 chr4 37505473 37505830 -146782832 - THE1B LTR MaLR 0 364 1 1292 107 10 0 chr4 37505830 37506027 -146782635 - THE1B-int LTR MaLR 0 1580 1382 459 173 35 0 chr4 37506030 37506203 -146782459 + (TA)n Simple_repeat Simple_repeat 2 180 0 438 173 41 0 chr4 37506218 37506539 -146782123 + (TA)n Simple_repeat Simple_repeat 1 334 0 199 68 0 45 chr4 37506542 37506586 -146782076 + (TTTAA)n Simple_repeat Simple_repeat 5 46 0 32 0 0 0 chr4 37506586 37506618 -146782044 + AT_rich Low_complexity Low_complexity 1 32 0 1281 110 0 0 chr4 37506628 37506801 -146781861 - THE1B LTR MaLR -191 173 1 331 140 168 28 chr4 37506802 37506872 -146781790 + L1MA9 LINE L1 6190 6249 -63 192 40 0 0 chr4 37506872 37506897 -146781765 + (CA)n Simple_repeat Simple_repeat 2 26 0 331 140 168 28 chr4 37506897 37506933 -146781729 + L1MA9 LINE L1 6249 6311 -1 2886 125 7 0 chr4 37507991 37508446 -146780216 - L1MA1 LINE L1 0 6302 5845 2003 138 31 0 chr4 37509174 37509464 -146779198 + AluSx SINE Alu 1 299 -13 180 442 0 17 chr4 37509931 37510051 -146778611 - MIR SINE MIR -73 135 18 796 254 151 15 chr4 37510607 37510879 -146777783 - L2 LINE L2 -5 3308 3000 1033 182 79 8 chr4 37511070 37511509 -146777153 - MER34 LTR ERV1 -19 523 25 253 342 84 40 chr4 37511693 37511829 -146776833 + MLT1K LTR MaLR 294 423 -165 1750 159 9 22 chr4 37511829 37512144 -146776518 - AluSx SINE Alu -1 311 1 253 342 84 40 chr4 37512144 37512282 -146776380 + MLT1K LTR MaLR 423 580 -8 635 201 46 118 chr4 37512390 37512653 -146776009 - MLT1A1 LTR MaLR -121 244 1 229 220 0 0 chr4 37512974 37513024 -146775638 - MER67B LTR ERV1 0 661 612 1370 228 46 11 chr4 37513051 37513402 -146775260 - MER31B LTR ERV1 -103 363 1 21 0 0 0 chr4 37513615 37513636 -146775026 + AT_rich Low_complexity Low_complexity 1 21 0 476 256 42 84 chr4 37513693 37513884 -146774778 + MER5A DNA MER1_type 6 188 -1 298 340 112 15 chr4 37513933 37514130 -146774532 - MIR SINE MIR -7 255 40 3244 167 18 70 chr4 37514137 37514861 -146773801 - LTR8 LTR ERV1 0 691 6 34 42 0 0 chr4 37516634 37516682 -146771980 + AT_rich Low_complexity Low_complexity 1 48 0 1197 239 118 20 chr4 37516906 37517261 -146771401 + MSTD LTR MaLR 1 390 -6 462 300 104 72 chr4 37518363 37518880 -146769782 + L2 LINE L2 1992 2525 -789 243 323 24 24 chr4 37519196 37519277 -146769385 + MLT1G1 LTR MaLR 469 552 -43 1740 189 101 90 chr4 37519277 37519790 -146768872 - MLT2B1 LTR ERVL -1 519 1 243 323 24 24 chr4 37519790 37519835 -146768827 + MLT1G1 LTR MaLR 551 595 0 315 339 85 16 chr4 37521324 37521513 -146767149 + MLT1J LTR MaLR 1 202 -309 333 132 0 0 chr4 37521574 37521627 -146767035 + MLT1J LTR MaLR 420 472 -39 24 0 0 0 chr4 37521706 37521730 -146766932 + AT_rich Low_complexity Low_complexity 1 24 0 2947 50 3 0 chr4 37523064 37523101 -146765561 + L1P LINE L1 4821 4856 -1290 3000 62 0 5 chr4 37523101 37523486 -146765176 - L1PA3 LINE L1 0 6155 5773 2947 50 3 0 chr4 37523486 37523824 -146764838 + L1P LINE L1 4856 5197 -949 326 368 74 13 chr4 37523901 37524132 -146764530 + L2 LINE L2 2632 2876 -438 316 309 0 0 chr4 37524583 37524677 -146763985 - L1MC4 LINE L1 -1335 6707 6614 247 200 17 0 chr4 37524785 37524845 -146763817 + CT-rich Low_complexity Low_complexity 1 61 0 243 267 23 35 chr4 37524876 37524962 -146763700 - L2 LINE L2 -71 3242 3158 2334 77 23 0 chr4 37525266 37525566 -146763096 + AluSg SINE Alu 3 309 -1 2202 271 80 37 chr4 37525997 37526313 -146762349 - L1MC4 LINE L1 0 8042 7741 240 35 0 0 chr4 37526313 37526342 -146762320 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2202 271 80 37 chr4 37526342 37527097 -146761565 - L1MC4 LINE L1 -301 7741 6925 228 233 103 69 chr4 37527144 37527260 -146761402 + MER5A DNA MER1_type 1 120 -69 2207 218 26 2 chr4 37527346 37527815 -146760847 - MER67D LTR ERV1 -34 480 1 394 333 0 0 chr4 37527817 37527928 -146760734 + L2 LINE L2 3162 3272 0 285 308 31 46 chr4 37528027 37528157 -146760505 + MER5B DNA MER1_type 1 128 -50 697 296 17 17 chr4 37528847 37529033 -146759629 - MIR SINE MIR 0 262 74 480 105 0 70 chr4 37529033 37529119 -146759543 - MADE1 DNA Mariner 0 80 1 697 296 17 17 chr4 37529119 37529165 -146759497 - MIR SINE MIR -187 75 30 901 225 23 28 chr4 37529191 37529409 -146759253 + MER20 DNA MER1_type 3 219 0 181 83 56 0 chr4 37529450 37529486 -146759176 + (TA)n Simple_repeat Simple_repeat 1 38 0 281 326 51 0 chr4 37530466 37530564 -146758098 - MIR3 SINE MIR -17 191 89 2251 107 3 0 chr4 37531129 37531429 -146757233 + AluSx SINE Alu 1 301 -11 31 26 0 0 chr4 37531859 37531897 -146756765 + AT_rich Low_complexity Low_complexity 1 38 0 455 295 266 0 chr4 37532211 37532418 -146756244 - MIR SINE MIR 0 262 1 237 308 58 10 chr4 37532583 37532687 -146755975 + L1MC5 LINE L1 6719 6827 -1134 2024 131 3 0 chr4 37532824 37533130 -146755532 + AluSg SINE Alu 1 307 0 193 226 113 19 chr4 37533132 37533185 -146755477 + L3 LINE CR1 896 953 -624 1303 219 49 31 chr4 37533195 37533548 -146755114 + MLT1A1 LTR MaLR 3 365 0 767 313 68 26 chr4 37535147 37535531 -146753131 - MLT1J1 LTR MaLR -34 412 13 540 250 121 1 chr4 37535566 37535712 -146752950 - MLT1J2 LTR MaLR -237 172 13 575 242 114 0 chr4 37535761 37535893 -146752769 - MLT1J1 LTR MaLR -287 159 13 23 0 0 0 chr4 37535968 37535991 -146752671 + AT_rich Low_complexity Low_complexity 1 23 0 1739 159 7 14 chr4 37536264 37536559 -146752103 + AluJo SINE Alu 11 303 -9 1242 167 42 0 chr4 37536716 37536956 -146751706 - L1MA9 LINE L1 -189 6123 5874 954 149 80 5 chr4 37536956 37537140 -146751522 + L1MA9 LINE L1 6111 6312 0 693 185 92 56 chr4 37538478 37538673 -146749989 + L2 LINE L2 3112 3313 0 260 263 132 9 chr4 37539013 37539127 -146749535 - MER67D LTR ERV1 -3 511 384 1454 162 85 85 chr4 37539188 37539559 -146749103 - MER67C LTR ERV1 -242 272 1 393 259 25 81 chr4 37539975 37540172 -146748490 - MIR SINE MIR -75 187 2 21 0 0 0 chr4 37540931 37540952 -146747710 + AT_rich Low_complexity Low_complexity 1 21 0 211 310 20 10 chr4 37541269 37541369 -146747293 + CT-rich Low_complexity Low_complexity 5 105 0 513 348 58 5 chr4 37541778 37542002 -146746660 - MIR SINE MIR -9 253 18 654 201 34 98 chr4 37542579 37542813 -146745849 - LTR12 LTR ERV1 -258 456 238 2244 114 0 0 chr4 37543836 37544135 -146744527 + AluSx SINE Alu 1 299 -13 384 215 101 108 chr4 37544824 37544982 -146743680 + MIR SINE MIR 65 221 -41 428 331 12 54 chr4 37545754 37545920 -146742742 - MER91A DNA MER1_type -3 193 35 300 278 113 17 chr4 37546185 37546300 -146742362 - MIR SINE MIR -39 223 98 737 251 158 43 chr4 37546345 37546807 -146741855 - MER113 DNA MER1_type? -3 518 4 564 317 54 18 chr4 37546870 37547094 -146741568 + MIR SINE MIR 24 255 -7 34 72 0 0 chr4 37547173 37547242 -146741420 + AT_rich Low_complexity Low_complexity 1 69 0 24 0 0 0 chr4 37548003 37548027 -146740635 + AT_rich Low_complexity Low_complexity 1 24 0 1455 105 22 4 chr4 37548029 37548257 -146740405 - L1PB1 LINE L1 0 6151 5920 22 35 0 0 chr4 37548565 37548594 -146740068 + AT_rich Low_complexity Low_complexity 1 29 0 275 252 90 114 chr4 37548889 37549179 -146739483 - MLT1J LTR MaLR -130 381 99 261 250 164 31 chr4 37549263 37549328 -146739334 - L2 LINE L2 -132 3181 3126 183 80 0 0 chr4 37549328 37549353 -146739309 + (TA)n Simple_repeat Simple_repeat 1 25 0 261 250 164 31 chr4 37549353 37549415 -146739247 - L2 LINE L2 -187 3126 3037 5301 249 71 24 chr4 37549418 37550684 -146737978 + L1MB7 LINE L1 5 1210 -5434 7105 65 4 0 chr4 37550684 37551999 -146736663 + L1PA8 LINE L1 4855 6172 0 5301 249 71 24 chr4 37551999 37553659 -146735003 + L1MB7 LINE L1 1210 3108 -3536 3929 201 24 38 chr4 37553655 37553689 -146734973 + L1MB7 LINE L1 5472 5505 -1177 * 2409 62 3 0 chr4 37553689 37553979 -146734683 + AluY SINE Alu 1 291 -20 3929 201 24 38 chr4 37553979 37555163 -146733499 + L1MB7 LINE L1 5505 6664 -18 211 391 22 0 chr4 37555173 37555265 -146733397 - L2 LINE L2 -252 3061 2968 202 328 57 41 chr4 37555697 37555819 -146732843 + MIR SINE MIR 136 259 -3 32 57 0 0 chr4 37555949 37556002 -146732660 + AT_rich Low_complexity Low_complexity 1 53 0 180 111 0 0 chr4 37556774 37556801 -146731861 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 2328 164 16 27 chr4 37557041 37557491 -146731171 - MER65A LTR ERV1 0 445 1 11810 222 34 39 chr4 37557622 37562138 -146726524 - L1P5 LINE L1 -383 6476 1965 581 346 12 19 chr4 37562323 37562644 -146726018 - L1P5 LINE L1 -5833 1017 699 337 367 6 6 chr4 37562708 37562885 -146725777 - L1PBa LINE L1 -5258 1605 1429 322 355 111 29 chr4 37562856 37563198 -146725464 - L1PBa LINE L1 -6322 541 148 * 217 0 61 0 chr4 37563198 37563231 -146725431 + (TTG)n Simple_repeat Simple_repeat 2 36 0 322 355 111 29 chr4 37563231 37563367 -146725295 - L1PBa LINE L1 -6715 148 24 223 261 127 45 chr4 37563881 37564015 -146724647 - L2 LINE L2 -2195 1119 975 1229 200 79 41 chr4 37565778 37566068 -146722594 + AluJo SINE Alu 1 301 -1 1812 139 7 0 chr4 37566656 37566957 -146721705 + L1PA13 LINE L1 5861 6163 0 2756 224 32 13 chr4 37567621 37568254 -146720408 + MER82 DNA MER2_type 7 651 -2 880 296 61 40 chr4 37568422 37568848 -146719814 - LTR16A LTR ERVL 0 450 16 2021 194 59 30 chr4 37568942 37569433 -146719229 + MLT1D LTR MaLR 1 505 0 198 0 0 0 chr4 37569587 37569609 -146719053 + (TTA)n Simple_repeat Simple_repeat 1 22 0 406 319 58 90 chr4 37569932 37570242 -146718420 - L2 LINE L2 -49 3223 2924 927 292 8 8 chr4 37570267 37570517 -146718145 - MIR SINE MIR -10 252 3 454 271 116 40 chr4 37570733 37570958 -146717704 + MIR SINE MIR 11 252 -10 322 297 103 65 chr4 37571149 37571334 -146717328 + MIR3 SINE MIR 5 196 -12 183 359 41 69 chr4 37571452 37571597 -146717065 + MIR3 SINE MIR 4 144 -64 2003 145 0 0 chr4 37571651 37571954 -146716708 + AluSg SINE Alu 1 303 -7 191 333 108 18 chr4 37572117 37572228 -146716434 + L2 LINE L2 3182 3302 -11 11088 31 0 0 chr4 37572400 37573736 -146714926 - L1P LINE L1 -1899 4247 2912 7856 10 0 7 chr4 37573736 37574995 -146713667 + L1PA2 LINE L1 4899 6151 -4 474 237 22 7 chr4 37575116 37575255 -146713407 + L1ME4a LINE L1 5965 6105 -16 1850 180 18 6 chr4 37575468 37575807 -146712855 - MER2 DNA MER2_type 0 344 2 388 145 14 0 chr4 37578497 37578566 -146710096 - L1PA16 LINE L1 -9 6157 6088 23 54 0 0 chr4 37578730 37578767 -146709895 + AT_rich Low_complexity Low_complexity 1 37 0 382 261 17 67 chr4 37579250 37579369 -146709293 + MLT1K LTR MaLR 226 338 -250 255 233 27 14 chr4 37579439 37579512 -146709150 + MLT1K LTR MaLR 515 588 0 251 185 123 0 chr4 37579522 37579587 -146709075 + MIR SINE MIR 91 163 -99 2362 164 10 16 chr4 37580071 37580456 -146708206 + LTR32 LTR ERVL 89 471 0 249 368 48 32 chr4 37580597 37580722 -146707940 + MIR3 SINE MIR 28 154 -54 2151 109 17 0 chr4 37581789 37581804 -146706858 - AluSg SINE Alu 0 310 297 210 33 33 0 chr4 37581804 37581834 -146706828 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 2151 109 17 0 chr4 37581834 37582112 -146706550 - AluSg SINE Alu -13 297 1 26 30 0 0 chr4 37582643 37582676 -146705986 + AT_rich Low_complexity Low_complexity 1 33 0 363 328 74 59 chr4 37584652 37585058 -146703604 - L2 LINE L2 -4 3309 2898 536 322 43 111 chr4 37585278 37585324 -146703338 - L2 LINE L2 -691 2623 2575 1166 184 0 40 chr4 37585324 37585552 -146703110 + MER20 DNA MER1_type 1 219 0 536 322 43 111 chr4 37585552 37586633 -146702029 - L2 LINE L2 -739 2575 1572 646 247 25 16 chr4 37587123 37587314 -146701348 + MIR SINE MIR 9 205 -57 246 269 231 0 chr4 37588505 37588613 -146700049 - MER5A DNA MER1_type -1 188 56 413 350 22 36 chr4 37589407 37589681 -146698981 + L2 LINE L2 1070 1339 -1975 188 386 11 11 chr4 37589711 37589799 -146698863 + MIR SINE MIR 14 101 -161 5415 154 53 8 chr4 37589812 37591209 -146697453 - L1PA16 LINE L1 -9 6157 4718 473 301 8 0 chr4 37591217 37591340 -146697322 + MIR SINE MIR 102 225 -37 323 309 227 27 chr4 37591380 37591533 -146697129 + L2 LINE L2 1397 1518 -1796 1420 211 62 3 chr4 37591533 37591855 -146696807 + MER58B DNA MER1_type 1 341 0 323 309 227 27 chr4 37591855 37592252 -146696410 + L2 LINE L2 1518 2057 -1257 338 24 0 0 chr4 37592469 37592511 -146696151 - MADE1 DNA Mariner 0 80 39 579 149 70 0 chr4 37592731 37592845 -146695817 - L1MB3 LINE L1 -2 6181 6060 221 263 40 50 chr4 37592903 37593002 -146695660 + L2 LINE L2 3173 3270 -2 2498 79 0 0 chr4 37593678 37593981 -146694681 + AluSc SINE Alu 3 305 -4 381 231 54 68 chr4 37594448 37594595 -146694067 + MLT1H LTR MaLR 210 354 -195 249 286 75 25 chr4 37594645 37594806 -146693856 + L1ME LINE L1 5564 5732 -389 319 88 18 0 chr4 37594887 37594944 -146693718 + L1PA6 LINE L1 6097 6154 0 22 0 0 0 chr4 37594944 37594966 -146693696 + AT_rich Low_complexity Low_complexity 1 22 0 7422 255 59 20 chr4 37594966 37595523 -146693139 + L1MEc LINE L1 1713 2247 -3968 880 216 50 40 chr4 37595523 37595745 -146692917 - MER58A DNA MER1_type 0 224 1 7422 255 59 20 chr4 37595745 37598358 -146690304 + L1MEc LINE L1 2247 4988 -1227 1486 216 108 19 chr4 37598609 37599113 -146689549 - MLT2F LTR ERVL -68 595 1 305 214 71 65 chr4 37599114 37599268 -146689394 - MER103 DNA DNA -1 165 11 763 282 62 4 chr4 37599743 37599970 -146688692 + MIR SINE MIR 2 241 -21 456 284 71 22 chr4 37600028 37600211 -146688451 - MIR SINE MIR -65 197 6 243 103 0 0 chr4 37601017 37601056 -146687606 + (TG)n Simple_repeat Simple_repeat 2 40 0 2287 179 19 9 chr4 37601997 37602416 -146686246 + MER95 LTR ERV 9 431 0 237 201 5 5 chr4 37603690 37603749 -146684913 + MIR SINE MIR 71 130 -78 2375 65 16 3 chr4 37603756 37604063 -146684599 - AluY SINE Alu 0 311 1 2119 102 7 3 chr4 37604065 37604360 -146684302 - AluSx SINE Alu -15 297 2 303 229 180 25 chr4 37604391 37604513 -146684149 + MIR SINE MIR 8 148 -114 2080 176 8 6 chr4 37604514 37604878 -146683784 + MLT1A1 LTR MaLR 1 365 0 1854 115 67 7 chr4 37605152 37605445 -146683217 + AluSx SINE Alu 1 309 0 352 337 51 20 chr4 37605488 37605684 -146682978 + MIR SINE MIR 53 254 -8 2237 86 3 17 chr4 37605934 37606235 -146682427 + AluY SINE Alu 1 297 -14 393 340 84 20 chr4 37606268 37606333 -146682329 - MLT1K LTR MaLR -7 581 522 1032 214 182 38 chr4 37606333 37606679 -146681983 + MSTD LTR MaLR 1 396 0 393 340 84 20 chr4 37606679 37606816 -146681846 - MLT1K LTR MaLR -66 522 366 819 299 47 58 chr4 37606882 37607330 -146681332 + ERVL LTR ERVL 4470 4912 -852 288 384 60 0 chr4 37607331 37607516 -146681146 + ERVL LTR ERVL 4811 5006 -648 294 306 24 24 chr4 37607696 37607820 -146680842 + LTR16A1 LTR ERVL 23 146 -311 337 229 99 104 chr4 37607838 37608039 -146680623 + LTR16A LTR ERVL 251 450 0 421 277 220 0 chr4 37608039 37608180 -146680482 - MIR SINE MIR -4 258 87 567 211 67 62 chr4 37608867 37609075 -146679587 + MER112 DNA MER1_type 2 210 -50 214 355 97 32 chr4 37609119 37609274 -146679388 - MIR SINE MIR -48 214 50 261 303 184 13 chr4 37610323 37610475 -146678187 - MER5B DNA MER1_type 0 178 1 370 284 74 65 chr4 37610487 37610702 -146677960 + L1M4 LINE L1 4733 4949 -1197 31 44 0 0 chr4 37610725 37610770 -146677892 + AT_rich Low_complexity Low_complexity 1 45 0 12071 154 20 13 chr4 37611440 37614789 -146673873 - L1MA1 LINE L1 -29 7692 4313 2111 133 68 6 chr4 37614790 37615143 -146673519 + THE1C LTR MaLR 1 375 0 9366 140 43 10 chr4 37615143 37616661 -146672001 + THE1C-int LTR MaLR 1 1569 -11 2108 143 41 14 chr4 37616670 37617035 -146671627 + THE1C LTR MaLR 1 375 0 10209 210 66 25 chr4 37617035 37620862 -146667800 - L1MA1 LINE L1 -3249 4316 15 348 364 70 17 chr4 37620870 37621172 -146667490 - L1ME3 LINE L1 -216 5946 5629 348 253 120 51 chr4 37621189 37621347 -146667315 - L1ME3 LINE L1 -725 5437 5269 2189 140 36 0 chr4 37621393 37621778 -146666884 - L1MA9 LINE L1 -2 6310 5912 868 170 88 0 chr4 37621781 37621854 -146666808 + L1MA9 LINE L1 5705 5770 -542 213 94 0 0 chr4 37621854 37621886 -146666776 + (CA)n Simple_repeat Simple_repeat 2 33 0 868 170 88 0 chr4 37621886 37621983 -146666679 + L1MA9 LINE L1 5770 5890 -422 2125 132 0 3 chr4 37622213 37622516 -146666146 + AluSg SINE Alu 1 302 -8 22 56 0 0 chr4 37622559 37622595 -146666067 + AT_rich Low_complexity Low_complexity 1 36 0 196 369 12 12 chr4 37622699 37622783 -146665879 - MIR3 SINE MIR -50 158 75 22 0 0 0 chr4 37622797 37622819 -146665843 + AT_rich Low_complexity Low_complexity 1 22 0 584 292 36 43 chr4 37623557 37623986 -146664676 - LTR33 LTR ERVL -19 502 43 279 0 0 0 chr4 37624948 37624979 -146663683 + (TG)n Simple_repeat Simple_repeat 2 32 0 180 0 0 0 chr4 37625182 37625202 -146663460 + (CAA)n Simple_repeat Simple_repeat 2 21 0 195 315 250 0 chr4 37625227 37625335 -146663327 - L2 LINE L2 -2 3270 3136 261 295 27 27 chr4 37625640 37625752 -146662910 + MLT1L LTR MaLR 361 472 -143 356 244 76 30 chr4 37626054 37626185 -146662477 + MIR SINE MIR 93 229 -33 511 170 62 18 chr4 37626634 37626746 -146661916 - MER74B LTR ERVL 0 622 506 2111 179 55 21 chr4 37626760 37627180 -146661482 + MLT2B1 LTR ERVL 7 440 -80 2005 110 16 50 chr4 37627192 37627633 -146661029 + MER51B LTR ERV1 3 377 0 239 121 0 0 chr4 37627633 37627666 -146660996 + MLT2B1 LTR ERVL 483 515 0 * 1849 209 92 16 chr4 37627666 37628090 -146660572 - MER74B LTR ERVL -121 501 46 386 181 0 28 chr4 37628545 37628689 -146659973 + (TA)n Simple_repeat Simple_repeat 2 141 0 270 176 0 0 chr4 37628774 37628825 -146659837 + (TA)n Simple_repeat Simple_repeat 1 51 0 489 146 13 26 chr4 37628914 37629065 -146659597 + (TA)n Simple_repeat Simple_repeat 2 150 0 200 303 22 0 chr4 37629097 37629186 -146659476 + (TA)n Simple_repeat Simple_repeat 1 91 0 414 313 15 8 chr4 37629264 37629395 -146659267 + L2 LINE L2 3182 3313 0 23 0 0 0 chr4 37630073 37630096 -146658566 + AT_rich Low_complexity Low_complexity 1 23 0 2150 113 0 0 chr4 37630240 37630522 -146658140 - AluSx SINE Alu -30 282 1 534 214 45 0 chr4 37630577 37630689 -146657973 + MER63 DNA MER1_type 1 743 -319 795 239 34 6 chr4 37630915 37631091 -146657571 + MER5A DNA MER1_type 1 181 -8 2053 146 60 3 chr4 37631136 37631505 -146657157 - MLT1B LTR MaLR 0 390 1 23 33 0 0 chr4 37631510 37631540 -146657122 + AT_rich Low_complexity Low_complexity 1 30 0 2137 125 7 0 chr4 37632281 37632577 -146656085 - AluSx SINE Alu -14 298 1 28 0 0 0 chr4 37632674 37632702 -146655960 + AT_rich Low_complexity Low_complexity 1 28 0 339 346 43 25 chr4 37633001 37633163 -146655499 - L3 LINE CR1 -3 1574 1410 262 355 59 21 chr4 37633373 37633559 -146655103 + L2 LINE L2 1698 1890 -1424 392 333 50 81 chr4 37633973 37634673 -146653989 + L2 LINE L2 2301 3038 -234 863 331 90 44 chr4 37634680 37635373 -146653289 - L2 LINE L2 0 3313 2547 2334 128 43 0 chr4 37635373 37635724 -146652938 + MER47A DNA MER2_type 1 366 0 863 331 90 44 chr4 37635724 37636092 -146652570 - L2 LINE L2 -766 2547 2197 30 27 0 0 chr4 37636095 37636132 -146652530 + AT_rich Low_complexity Low_complexity 1 37 0 563 306 69 25 chr4 37636136 37636381 -146652281 - MIR SINE MIR 0 262 7 182 289 0 0 chr4 37636385 37636430 -146652232 + L2 LINE L2 3269 3313 0 349 286 67 39 chr4 37636510 37636688 -146651974 - L3 LINE CR1 -646 931 749 2672 99 19 0 chr4 37636970 37637344 -146651318 + L1PA10 LINE L1 5784 6164 -4 329 317 156 18 chr4 37637721 37637888 -146650774 + MIR SINE MIR 49 238 -24 23 0 0 0 chr4 37638087 37638110 -146650552 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr4 37639693 37639714 -146648948 + AT_rich Low_complexity Low_complexity 1 21 0 1703 166 43 6 chr4 37639974 37640198 -146648464 - MER44D DNA MER2_type -1882 609 395 365 39 20 0 chr4 37640198 37640249 -146648413 + (TCTA)n Simple_repeat Simple_repeat 1 52 0 1703 166 43 6 chr4 37640249 37640350 -146648312 - MER44D DNA MER2_type -2096 395 2 793 222 11 21 chr4 37640552 37640741 -146647921 + MER5A DNA MER1_type 2 188 -1 310 314 10 0 chr4 37640831 37640933 -146647729 + HERV16 LTR ERVL 1110 1212 -3784 216 0 0 0 chr4 37640956 37640980 -146647682 + (A)n Simple_repeat Simple_repeat 1 24 0 1113 287 201 37 chr4 37641252 37641519 -146647143 + HERV16 LTR ERVL 1606 1828 -3168 2306 151 8 60 chr4 37641519 37641558 -146647104 + MER65A LTR ERV1 1 40 -405 198 0 0 0 chr4 37641558 37641580 -146647082 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 2306 151 8 60 chr4 37641580 37642009 -146646653 + MER65A LTR ERV1 40 445 0 1113 287 201 37 chr4 37642009 37642748 -146645914 + HERV16 LTR ERVL 1828 2726 -2270 553 272 73 39 chr4 37642976 37643208 -146645454 + MLT1I LTR MaLR 163 402 -7 196 269 169 50 chr4 37643864 37644024 -146644638 + L2 LINE L2 2098 2276 -1038 2242 96 7 3 chr4 37644379 37644672 -146643990 - AluSq SINE Alu -19 294 1 1250 192 62 19 chr4 37645361 37645730 -146642932 - MER3 DNA MER1_type 0 2618 2234 609 164 36 0 chr4 37645733 37645843 -146642819 - MER3 DNA MER1_type -47 162 49 562 277 52 69 chr4 37646357 37646479 -146642183 + HAL1 LINE L1 51 174 -2333 1833 186 37 8 chr4 37646479 37646834 -146641828 - MLT1A1 LTR MaLR 0 365 1 562 277 52 69 chr4 37646834 37647058 -146641604 + HAL1 LINE L1 174 391 -2116 2283 124 30 25 chr4 37647098 37647460 -146641202 + THE1B LTR MaLR 1 364 0 1482 212 123 64 chr4 37647500 37648094 -146640568 - MLT1E2 LTR MaLR 0 626 3 859 273 80 33 chr4 37648130 37648467 -146640195 + HAL1 LINE L1 496 848 -1659 23 33 0 0 chr4 37648467 37648497 -146640165 + AT_rich Low_complexity Low_complexity 1 30 0 2406 184 9 19 chr4 37648635 37649065 -146639597 + MSTC LTR MaLR 1 426 -2 2157 121 3 0 chr4 37649158 37649456 -146639206 - AluSp SINE Alu -14 299 1 544 265 20 20 chr4 37649742 37649893 -146638769 - MIR SINE MIR -110 152 2 298 282 14 0 chr4 37650039 37650110 -146638552 + L2 LINE L2 3195 3266 -47 192 367 163 0 chr4 37651791 37651889 -146636773 - L2 LINE L2 -19 3253 3140 183 284 15 30 chr4 37652826 37652893 -146635769 - L2 LINE L2 -2897 417 352 302 222 0 25 chr4 37652969 37653050 -146635612 - L1ME4a LINE L1 -3 6118 6040 649 318 86 21 chr4 37653112 37653641 -146635021 - L1ME4a LINE L1 -285 5836 5259 21 36 0 0 chr4 37653710 37653738 -146634924 + AT_rich Low_complexity Low_complexity 1 28 0 2139 141 0 3 chr4 37653780 37654092 -146634570 - AluSq SINE Alu -2 311 1 21 0 0 0 chr4 37654708 37654729 -146633933 + AT_rich Low_complexity Low_complexity 1 21 0 246 42 62 0 chr4 37655556 37655604 -146633058 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 261 283 28 9 chr4 37655974 37656080 -146632582 + L1ME3A LINE L1 5817 5924 -246 1329 291 69 12 chr4 37656350 37656842 -146631820 - LTR33 LTR ERVL 0 521 2 362 316 38 48 chr4 37657181 37657472 -146631190 + L1ME LINE L1 609 896 -5174 3020 256 39 25 chr4 37657569 37657650 -146631012 + ERVL LTR ERVL 3598 3676 -2088 2281 101 0 3 chr4 37657650 37657956 -146630706 + AluSq SINE Alu 1 305 -8 3020 256 39 25 chr4 37657956 37658745 -146629917 + ERVL LTR ERVL 3676 4480 -1284 972 294 27 61 chr4 37658743 37659185 -146629477 + ERVL LTR ERVL 4951 5377 -387 * 4090 184 27 0 chr4 37659188 37659374 -146629288 - MER44D DNA MER2_type -1884 603 423 2339 101 48 25 chr4 37659374 37659730 -146628932 - THE1B LTR MaLR 0 364 1 4090 184 27 0 chr4 37659730 37660254 -146628408 - MER44D DNA MER2_type -2064 423 2 315 265 173 12 chr4 37660501 37660663 -146627999 + LTR41 LTR ERVL 584 771 -2 410 300 146 4 chr4 37660663 37660916 -146627746 + L1ME LINE L1 2080 2368 -3712 238 248 18 80 chr4 37661082 37661195 -146627467 + L1ME LINE L1 2590 2695 -3385 722 244 17 28 chr4 37661302 37661482 -146627180 - MER63A DNA MER1_type -30 180 3 403 327 93 30 chr4 37661483 37661783 -146626879 + L2 LINE L2 2283 2601 -713 811 0 20 0 chr4 37662209 37662308 -146626354 + (TAGA)n Simple_repeat Simple_repeat 1 101 0 740 294 86 53 chr4 37662889 37663296 -146625366 - MLT1J LTR MaLR -21 425 36 379 306 71 18 chr4 37665357 37665527 -146623135 + MIR SINE MIR 48 226 -36 556 130 0 0 chr4 37665527 37665619 -146623043 + Ricksha DNA DNA 9 100 -3146 325 167 0 0 chr4 37665626 37665686 -146622976 + Ricksha DNA DNA 252 311 -1735 4238 147 14 0 chr4 37665695 37666396 -146622266 + Ricksha DNA DNA 2506 3216 -30 180 333 0 0 chr4 37666410 37666461 -146622201 + MIR SINE MIR 210 260 -2 279 259 85 22 chr4 37667135 37667270 -146621392 - MIR SINE MIR -45 163 51 183 42 0 0 chr4 37667937 37667961 -146620701 + (T)n Simple_repeat Simple_repeat 1 24 0 5369 126 29 9 chr4 37668004 37668493 -146620169 - L1PA15 LINE L1 -5 6160 5682 2318 52 42 0 chr4 37668493 37668779 -146619883 - AluY SINE Alu -13 298 1 5369 126 29 9 chr4 37668779 37669856 -146618806 - L1PA15 LINE L1 -483 5682 4585 341 265 143 7 chr4 37669915 37670062 -146618600 + MLT1I LTR MaLR 5 171 -238 286 279 0 13 chr4 37670222 37670301 -146618361 + MLT1I LTR MaLR 322 399 -10 258 262 75 37 chr4 37670453 37670560 -146618102 - MLT1J LTR MaLR -158 353 243 1651 197 37 20 chr4 37670596 37670952 -146617710 - MLT1A1 LTR MaLR -2 465 1 1221 167 62 4 chr4 37671084 37671139 -146617523 + MER50 LTR ERV1 1 51 -683 354 91 0 0 chr4 37671139 37671194 -146617468 + (CA)n Simple_repeat Simple_repeat 1 55 0 1221 167 62 4 chr4 37671194 37671365 -146617297 + MER50 LTR ERV1 51 240 -494 * 1618 140 3 107 chr4 37671349 37671685 -146616977 + MER50 LTR ERV1 434 734 0 1924 154 11 60 chr4 37672253 37672370 -146616292 + MER7A DNA MER2_type 1 122 -2916 1846 130 73 45 chr4 37672370 37672724 -146615938 - THE1B LTR MaLR 0 364 1 11564 102 3 0 chr4 37672734 37674305 -146614357 - THE1B-int LTR MaLR -4 1576 1 2053 131 54 23 chr4 37674305 37674656 -146614006 - THE1B LTR MaLR 0 364 3 1924 154 11 60 chr4 37674656 37674890 -146613772 + MER7A DNA MER2_type 129 344 -2 291 298 37 81 chr4 37674900 37675061 -146613601 - L2 LINE L2 -173 3099 2946 346 253 0 48 chr4 37675982 37676065 -146612597 - MIR SINE MIR -21 241 163 2252 92 38 14 chr4 37676697 37677065 -146611597 - L1MA1 LINE L1 0 6302 5926 276 114 0 0 chr4 37677066 37677110 -146611552 + L1 LINE L1 4780 4823 -1323 2128 106 72 58 chr4 37677475 37677834 -146610828 - THE1B LTR MaLR 0 364 1 360 250 116 27 chr4 37678027 37678139 -146610523 - L2 LINE L2 -5 3308 3187 353 290 61 38 chr4 37679180 37679311 -146609351 - MIR SINE MIR -70 192 59 1743 136 59 59 chr4 37679319 37679694 -146608968 + THE1C LTR MaLR 1 375 0 363 96 0 0 chr4 37679887 37679939 -146608723 + (CA)n Simple_repeat Simple_repeat 1 52 0 1925 168 77 35 chr4 37679939 37680344 -146608318 - MSTA LTR MaLR -1 427 6 380 20 20 0 chr4 37680344 37680393 -146608269 + (TC)n Simple_repeat Simple_repeat 1 50 0 342 115 0 0 chr4 37680392 37680444 -146608218 + (CA)n Simple_repeat Simple_repeat 1 52 0 * 325 300 173 0 chr4 37681115 37681265 -146607397 - MIR SINE MIR -19 243 68 258 164 0 0 chr4 37681384 37681439 -146607223 + (CAT)n Simple_repeat Simple_repeat 2 56 0 203 393 17 8 chr4 37681508 37681625 -146607037 + L3b LINE CR1 1129 1246 -337 23 0 0 0 chr4 37681634 37681657 -146607005 + AT_rich Low_complexity Low_complexity 1 23 0 361 255 24 155 chr4 37681685 37682014 -146606648 - L1ME4a LINE L1 -67 6054 5706 399 337 91 36 chr4 37682069 37682321 -146606341 - L1ME4a LINE L1 -576 5586 5321 242 304 42 52 chr4 37682704 37682895 -146605767 + L2 LINE L2 2067 2255 -1059 628 283 113 13 chr4 37683356 37683586 -146605076 - MIR SINE MIR -1 261 9 237 297 121 15 chr4 37683686 37683828 -146604834 + MIR SINE MIR 17 146 -62 529 287 27 37 chr4 37685305 37685493 -146603169 + MER117 DNA MER1_type 5 190 -7 334 259 26 26 chr4 37685556 37685672 -146602990 - L1ME LINE L1 -513 5657 5542 229 299 102 48 chr4 37685703 37685850 -146602812 - MIR SINE MIR -95 167 13 23 68 0 0 chr4 37686473 37686517 -146602145 + AT_rich Low_complexity Low_complexity 1 44 0 650 191 20 41 chr4 37686577 37686724 -146601938 + MER70B LTR ERVL 12 155 -423 2367 215 8 12 chr4 37686724 37687217 -146601445 + MER70B LTR ERVL 88 578 0 279 347 0 0 chr4 37689393 37689468 -146599194 - MIR3 SINE MIR -23 185 111 344 317 42 8 chr4 37689659 37689779 -146598883 - MIR SINE MIR -111 151 28 371 275 70 48 chr4 37690509 37690712 -146597950 + MIR SINE MIR 45 262 0 583 108 20 39 chr4 37691354 37691456 -146597206 - L1PA16 LINE L1 0 6166 6067 2356 56 0 7 chr4 37692478 37692763 -146595899 - AluYb8 SINE Alu -13 305 23 610 224 91 12 chr4 37693672 37693837 -146594825 - MER45A DNA AcHobo 0 178 1 267 278 26 17 chr4 37694005 37694120 -146594542 + MLT1J2 LTR MaLR 32 147 -303 197 175 88 113 chr4 37694652 37694732 -146593930 + MIR SINE MIR 126 203 -59 654 241 91 52 chr4 37694940 37695375 -146593287 + MLT1C LTR MaLR 1 467 0 301 326 20 0 chr4 37696516 37696614 -146592048 + L2 LINE L2 3173 3272 0 3492 117 14 4 chr4 37698059 37698565 -146590097 - MER9 LTR ERVK 0 511 1 309 249 158 45 chr4 37700126 37700303 -146588359 + Charlie7 DNA MER1_type 1875 2071 -541 2168 128 3 0 chr4 37702305 37702602 -146586060 + AluJb SINE Alu 1 298 -14 1259 122 0 12 chr4 37702799 37702971 -146585691 + AluY SINE Alu 1 170 -141 323 43 0 22 chr4 37703450 37703496 -146585166 + (CA)n Simple_repeat Simple_repeat 2 46 0 287 312 19 32 chr4 37703641 37703798 -146584864 + MER112 DNA MER1_type 3 157 -103 1454 112 70 0 chr4 37704662 37704903 -146583759 - MSTA LTR MaLR 0 428 171 724 86 0 0 chr4 37705005 37705098 -146583564 + MER50 LTR ERV1 198 290 -444 2129 182 92 25 chr4 37705109 37705586 -146583076 + LTR22 LTR ERVK 1 509 0 * 2301 179 21 9 chr4 37705586 37706017 -146582645 + MER50 LTR ERV1 299 734 0 1862 136 176 16 chr4 37707004 37707373 -146581289 - MSTA LTR MaLR 0 428 1 341 22 22 0 chr4 37707473 37707519 -146581143 + (TG)n Simple_repeat Simple_repeat 1 47 0 25 0 0 0 chr4 37707644 37707669 -146580993 + AT_rich Low_complexity Low_complexity 1 25 0 580 241 63 120 chr4 37708598 37708947 -146579715 + MLT1C LTR MaLR 62 390 0 812 250 29 41 chr4 37709123 37709439 -146579223 + MLT1E2 LTR MaLR 278 589 -37 399 266 30 0 chr4 37709778 37709927 -146578735 - MIR SINE MIR -66 142 17 1475 219 35 33 chr4 37711267 37711723 -146576939 - MLT1C LTR MaLR -5 462 6 2148 117 0 3 chr4 37712359 37712659 -146576003 + AluSq SINE Alu 1 299 -14 1125 281 123 28 chr4 37713577 37714211 -146574451 - L1MCc LINE L1 -5072 1351 658 285 327 46 13 chr4 37714251 37714404 -146574258 - L1MCc LINE L1 -5868 555 398 449 279 61 5 chr4 37714435 37714632 -146574030 - L1MCc LINE L1 -6193 230 23 282 231 123 23 chr4 37714953 37715083 -146573579 - MLT1C LTR MaLR -315 152 10 977 142 117 95 chr4 37715146 37715213 -146573449 - MLT1A1 LTR MaLR 0 396 332 1737 163 24 10 chr4 37715213 37715502 -146573160 + AluJb SINE Alu 5 297 -15 977 142 117 95 chr4 37715502 37715777 -146572885 - MLT1A1 LTR MaLR -64 332 1 232 264 54 47 chr4 37715886 37716034 -146572628 + MLT1I LTR MaLR 20 168 -241 308 141 7 30 chr4 37716137 37716209 -146572453 + MLT1J2 LTR MaLR 303 422 -28 1232 68 0 0 chr4 37716300 37716463 -146572199 + L1P3 LINE L1 5349 5511 -661 208 272 0 52 chr4 37717978 37718151 -146570511 + (CAGG)n Simple_repeat Simple_repeat 4 167 0 610 214 18 80 chr4 37719369 37719593 -146569069 + L1M4 LINE L1 2618 2827 -3319 * 2434 78 3 3 chr4 37719594 37719902 -146568760 + AluYb8 SINE Alu 1 308 -10 6408 27 0 1 chr4 37719902 37720673 -146567989 - L1P LINE L1 -1816 4330 3559 1123 277 101 36 chr4 37720984 37721678 -146566984 + MER21B LTR ERV1 9 747 -116 266 239 0 30 chr4 37722614 37722681 -146565981 + MER81 DNA DNA 23 87 -27 6426 82 14 0 chr4 37726483 37727337 -146561325 + HERVK9 LTR ERVK 4769 5634 -282 1201 95 0 11 chr4 37727404 37727583 -146561079 + HERVK9 LTR ERVK 5608 5784 -132 534 99 0 0 chr4 37728865 37728956 -146559706 + (TC)n Simple_repeat Simple_repeat 1 91 0 278 255 67 92 chr4 37729841 37730155 -146558507 + L1MCc LINE L1 1163 1468 -4955 4349 45 0 0 chr4 37730851 37731406 -146557256 + L1P LINE L1 1554 2108 -4038 512 286 0 7 chr4 37731510 37731650 -146557012 + MSTD LTR MaLR 1 139 -257 864 156 0 0 chr4 37731678 37731858 -146556804 + CT-rich Low_complexity Low_complexity 1 180 0 841 231 17 22 chr4 37731870 37732101 -146556561 + MSTD LTR MaLR 196 396 0 622 327 90 29 chr4 37733246 37733769 -146554893 - LTR67 LTR ERVL -1 556 2 183 294 20 0 chr4 37733925 37733976 -146554686 + MIR SINE MIR 72 123 -139 * 845 309 126 42 chr4 37733934 37734607 -146554055 + L2 LINE L2 2546 3291 -22 2491 74 6 0 chr4 37736612 37736950 -146551712 - THE1A LTR MaLR -15 340 1 216 280 0 0 chr4 37737863 37737913 -146550749 - L2 LINE L2 -4 3268 3219 2640 30 0 0 chr4 37738680 37738978 -146549684 + AluY SINE Alu 1 298 -13 643 334 31 26 chr4 37739815 37740165 -146548497 + MLT1I LTR MaLR 9 360 -49 3996 209 22 43 chr4 37740191 37742158 -146546504 - L1MB8 LINE L1 -37 6141 4217 1739 111 0 24 chr4 37742161 37742414 -146546248 + AluSq SINE Alu 35 281 -32 271 0 51 0 chr4 37742414 37742453 -146546209 + (CAAAA)n Simple_repeat Simple_repeat 5 45 0 318 367 86 0 chr4 37743454 37743645 -146545017 - MIR SINE MIR -21 241 35 188 234 21 0 chr4 37743923 37743970 -146544692 + L2 LINE L2 3265 3312 -1 325 313 21 0 chr4 37744103 37744199 -146544463 + MIR SINE MIR 56 153 -109 705 296 8 34 chr4 37744387 37744654 -146544008 + MIR SINE MIR 3 262 0 207 188 0 0 chr4 37744654 37744702 -146543960 + (CTA)n Simple_repeat Simple_repeat 2 49 0 363 44 0 0 chr4 37745005 37745050 -146543612 + (TG)n Simple_repeat Simple_repeat 1 45 0 281 288 42 17 chr4 37745873 37745991 -146542671 + LTR67 LTR ERVL 428 548 -9 2548 126 0 6 chr4 37746142 37746508 -146542154 - THE1B LTR MaLR 0 364 1 37 76 0 0 chr4 37747287 37747366 -146541296 + AT_rich Low_complexity Low_complexity 1 79 0 301 256 45 25 chr4 37748156 37748267 -146540395 + MIR SINE MIR 34 145 -63 21 57 0 0 chr4 37748824 37748859 -146539803 + AT_rich Low_complexity Low_complexity 1 35 0 410 273 55 36 chr4 37750611 37750721 -146537941 + MIR SINE MIR 25 136 -72 465 265 86 0 chr4 37750782 37750899 -146537763 - MIR SINE MIR -101 161 35 399 41 0 0 chr4 37751233 37751282 -146537380 + (TG)n Simple_repeat Simple_repeat 2 50 0 2313 98 0 0 chr4 37756449 37756745 -146531917 - AluSq SINE Alu -17 296 1 245 309 28 42 chr4 37756817 37756985 -146531677 - MIR SINE MIR -66 142 11 307 280 11 32 chr4 37757282 37757375 -146531287 - L3 LINE CR1 0 1577 1487 260 171 43 29 chr4 37757667 37757737 -146530925 - MER46C DNA MER2_type 0 338 268 821 162 96 0 chr4 37757833 37758000 -146530662 + MER3 DNA MER1_type 1 183 -26 264 247 0 130 chr4 37758033 37758179 -146530483 - MER46C DNA MER2_type -201 137 11 243 0 0 0 chr4 37758995 37759022 -146529640 + (CA)n Simple_repeat Simple_repeat 2 28 0 824 291 31 0 chr4 37759213 37759440 -146529222 + MIR SINE MIR 29 262 0 1956 150 5 57 chr4 37759565 37759828 -146528834 - MER7A DNA MER2_type -2692 346 108 2080 113 14 14 chr4 37759828 37760120 -146528542 + AluSx SINE Alu 1 292 -20 1956 150 5 57 chr4 37760120 37760223 -146528439 - MER7A DNA MER2_type -2930 108 1 430 268 8 49 chr4 37760673 37760796 -146527866 - L2 LINE L2 0 3313 3196 833 251 134 52 chr4 37761299 37761777 -146526885 - MLT1H1 LTR MaLR -2 553 37 320 145 10 0 chr4 37762578 37762642 -146526020 + MLT1H1 LTR MaLR 496 551 -4 1975 80 21 3 chr4 37762761 37763048 -146525614 + L1PA13 LINE L1 5869 6160 -3 537 228 150 43 chr4 37765719 37766162 -146522500 + MLT1G1 LTR MaLR 41 622 -2 483 288 126 10 chr4 37766208 37766406 -146522256 + MIR SINE MIR 37 257 -5 249 217 50 0 chr4 37767988 37768048 -146520614 + MIR SINE MIR 74 136 -126 202 176 0 0 chr4 37768236 37768270 -146520392 + L2 LINE L2 3272 3305 -8 399 279 89 28 chr4 37769040 37769219 -146519443 + MIR3 SINE MIR 14 203 -5 505 302 133 13 chr4 37769744 37769969 -146518693 + MIR SINE MIR 6 257 -5 251 309 0 0 chr4 37770373 37770441 -146518221 - L2 LINE L2 -13 3300 3233 984 275 38 50 chr4 37770468 37770865 -146517797 - L2 LINE L2 -68 3245 2854 942 134 37 0 chr4 37771155 37771319 -146517343 - L1M2 LINE L1 -739 5573 5404 688 275 60 16 chr4 37772240 37772491 -146516171 + MIR SINE MIR 1 262 0 2117 159 52 109 chr4 37774225 37774759 -146513903 - MLT1D LTR MaLR -1 504 1 432 286 78 68 chr4 37775024 37775423 -146513239 - MLT1K LTR MaLR -3 585 183 191 336 38 69 chr4 37775584 37775715 -146512947 + L2 LINE L2 3138 3264 -8 189 395 59 52 chr4 37777081 37777387 -146511275 + L2 LINE L2 2948 3255 -17 281 344 31 8 chr4 37777574 37777702 -146510960 - L2 LINE L2 -607 2707 2577 2160 212 125 31 chr4 37778218 37779045 -146509617 - L1ME2 LINE L1 -1 6163 5258 676 164 0 0 chr4 37779314 37779430 -146509232 + L1PA12 LINE L1 11 126 -7455 2947 263 68 55 chr4 37779437 37781715 -146506947 - L1M4 LINE L1 -825 6132 3825 381 248 35 0 chr4 37781711 37781824 -146506838 - L1M4 LINE L1 -3404 3553 3437 * 1359 233 139 43 chr4 37781852 37782102 -146506560 - L1M4 LINE L1 -4606 2353 2128 24804 33 15 48 chr4 37782102 37785980 -146502682 + L1PA4 LINE L1 2324 6155 0 1359 233 139 43 chr4 37785980 37786801 -146501861 - L1M4 LINE L1 -4831 2128 1206 268 296 61 0 chr4 37787326 37787424 -146501238 - HsTC2 DNA Tc2 -1794 104 1 2914 160 100 6 chr4 37788890 37789439 -146499223 - MER6A DNA MER2_type 0 605 5 703 294 126 15 chr4 37789445 37789904 -146498758 - LTR33 LTR ERVL 0 521 12 209 396 31 10 chr4 37790187 37790283 -146498379 - L2 LINE L2 -20 3252 3155 581 295 17 6 chr4 37790391 37790564 -146498098 - MIR SINE MIR -49 213 39 216 307 43 57 chr4 37791586 37791726 -146496936 + MIR SINE MIR 82 219 -43 * 245 266 151 45 chr4 37791723 37791922 -146496740 - MIR SINE MIR -37 225 6 1615 209 19 48 chr4 37792890 37793264 -146495398 - MLT1A1 LTR MaLR 0 365 3 21 36 0 0 chr4 37794281 37794309 -146494353 + AT_rich Low_complexity Low_complexity 1 28 0 510 300 85 14 chr4 37795413 37795636 -146493026 + MIR SINE MIR 20 258 -4 5816 126 8 8 chr4 37795702 37796639 -146492023 + L1P3 LINE L1 1 937 -4938 3388 91 21 2 chr4 37796639 37797113 -146491549 + L1PA8A LINE L1 5633 6115 -16 40 59 0 0 chr4 37797820 37797888 -146490774 + AT_rich Low_complexity Low_complexity 1 68 0 282 252 49 14 chr4 37798227 37798370 -146490292 - L1MC4 LINE L1 -1 8041 7894 645 254 14 28 chr4 37798486 37798699 -146489963 - L1ME2 LINE L1 -10 6154 5945 203 171 0 24 chr4 37799006 37799047 -146489615 - MIR SINE MIR -5 257 218 541 310 94 66 chr4 37799149 37799575 -146489087 - L2 LINE L2 -15 3257 2820 29 0 0 0 chr4 37800495 37800524 -146488138 + AT_rich Low_complexity Low_complexity 1 29 0 1545 211 54 20 chr4 37801054 37801405 -146487257 + MLT1A1 LTR MaLR 1 363 -2 1870 154 0 10 chr4 37801518 37801830 -146486832 - MER1B DNA MER1_type -30 309 1 239 355 112 42 chr4 37803604 37803624 -146485038 - L3 LINE CR1 -5 1572 1555 2529 131 51 24 chr4 37803624 37804075 -146484587 - MER4C LTR ERV1 -2 463 1 239 355 112 42 chr4 37804075 37804268 -146484394 - L3 LINE CR1 -22 1555 1344 2821 194 42 37 chr4 37804713 37805224 -146483438 - MER82 DNA MER2_type 0 653 137 2688 156 11 7 chr4 37805224 37805686 -146482976 + L1PB3 LINE L1 5690 6153 -1 2821 194 42 37 chr4 37805686 37805823 -146482839 - MER82 DNA MER2_type -516 137 2 1821 230 122 29 chr4 37805823 37805964 -146482698 - L1MC4 LINE L1 -13 8029 7902 1293 196 149 10 chr4 37805964 37806265 -146482397 + MER2 DNA MER2_type 1 343 -1 1821 230 122 29 chr4 37806265 37806772 -146481890 - L1MC4 LINE L1 -140 7902 7321 1560 242 58 42 chr4 37806777 37807327 -146481335 - MER90 LTR ERV1 -11 564 6 256 258 0 16 chr4 37807374 37807436 -146481226 + (TAGG)n Simple_repeat Simple_repeat 2 62 0 600 210 200 0 chr4 37807436 37807636 -146481026 + L1MC4 LINE L1 7093 7332 -710 379 329 79 64 chr4 37808789 37809117 -146479545 + L2 LINE L2 2854 3186 -86 701 266 75 55 chr4 37809873 37810589 -146478073 - L1MEd LINE L1 -4723 1587 813 5537 164 39 10 chr4 37810749 37812837 -146475825 - L1MA5 LINE L1 -70 6932 4790 1121 190 117 70 chr4 37812837 37813195 -146475467 - THE1C LTR MaLR 0 375 1 6535 138 41 6 chr4 37813195 37814310 -146474352 - THE1C-int LTR MaLR 0 1580 427 4917 197 58 30 chr4 37814339 37815577 -146473085 - L1MA5 LINE L1 -2153 4695 3413 2095 103 7 13 chr4 37815577 37815878 -146472784 + AluSc SINE Alu 1 299 -10 4917 197 58 30 chr4 37815878 37816019 -146472643 - L1MA5 LINE L1 -3435 3413 3277 * 5214 238 72 95 chr4 37815990 37818789 -146469873 - L1MA5 LINE L1 -4106 2743 11 413 329 52 73 chr4 37818794 37819219 -146469443 - L1MEd LINE L1 -5702 417 2 3683 242 116 45 chr4 37819342 37819469 -146469193 - L1M4c LINE L1 -1994 4650 4533 18244 33 4 0 chr4 37819469 37822449 -146466213 - L1PA3 LINE L1 0 6155 3168 3683 242 116 45 chr4 37822449 37822521 -146466141 - L1M4c LINE L1 -2111 4533 4468 1999 121 4 0 chr4 37822521 37822832 -146465830 - AluSg SINE Alu 0 312 1 3683 242 116 45 chr4 37822832 37825501 -146463161 - L1M4c LINE L1 -2176 4468 1461 757 254 83 28 chr4 37825493 37825829 -146462833 - L1M4c LINE L1 -5301 1241 874 * 373 281 73 89 chr4 37825891 37826137 -146462525 - L1M4c LINE L1 -5662 880 639 338 282 69 50 chr4 37826408 37826610 -146462052 - L1M4c LINE L1 -6320 222 17 2228 104 6 19 chr4 37826846 37827162 -146461500 - AluSq SINE Alu -1 312 1 208 280 70 40 chr4 37828000 37828100 -146460562 + MIR SINE MIR 25 127 -81 25 100 0 0 chr4 37828240 37828290 -146460372 + GC_rich Low_complexity Low_complexity 1 50 0 23 0 0 0 chr4 37828716 37828739 -146459923 + AT_rich Low_complexity Low_complexity 1 23 0 818 225 25 6 chr4 37828743 37828943 -146459719 - MER33 DNA MER1_type -259 65 1 26 0 0 0 chr4 37829079 37829105 -146459557 + AT_rich Low_complexity Low_complexity 1 26 0 2071 84 11 21 chr4 37829135 37829420 -146459242 + AluSq SINE Alu 1 282 -31 3856 171 11 4 chr4 37829722 37830445 -146458217 - L1P3 LINE L1 -5147 728 1 255 240 103 49 chr4 37830539 37830686 -146457976 - MIR SINE MIR -38 224 71 1546 211 54 20 chr4 37831250 37831601 -146457061 + MLT1A1 LTR MaLR 1 363 -2 1870 154 0 10 chr4 37831714 37832026 -146456636 - MER1B DNA MER1_type -30 309 1 4600 204 21 57 chr4 37832706 37834246 -146454416 - L1PA14 LINE L1 -91 6064 4585 345 265 143 7 chr4 37834305 37834452 -146454210 + MLT1I LTR MaLR 5 171 -238 296 264 23 11 chr4 37834612 37834699 -146453963 + MLT1I LTR MaLR 322 409 0 246 227 106 0 chr4 37835588 37835654 -146453008 - MER117 DNA MER1_type -50 147 75 642 337 154 19 chr4 37836757 37837279 -146451383 - L2 LINE L2 -259 3054 2466 616 323 23 5 chr4 37837404 37837624 -146451038 + MIR SINE MIR 15 238 -24 2568 138 35 3 chr4 37837627 37838139 -146450523 + L1P4 LINE L1 5148 5669 -497 1554 115 5 0 chr4 37838255 37838503 -146450159 + AluSg/x SINE Alu 66 314 0 336 135 40 14 chr4 37838503 37838577 -146450085 + L1M4 LINE L1 3953 4028 -2118 * 15601 44 3 15 chr4 37838575 37840552 -146448110 + L1P LINE L1 3168 5120 -1026 680 275 60 16 chr4 37841806 37842057 -146446605 - MIR SINE MIR 0 262 1 252 0 0 0 chr4 37892753 37892781 -146395881 + (TG)n Simple_repeat Simple_repeat 2 29 0 * 351 0 0 0 chr4 37892780 37892819 -146395843 + (TA)n Simple_repeat Simple_repeat 1 39 0 276 100 0 0 chr4 37892853 37892893 -146395769 + (A)n Simple_repeat Simple_repeat 1 40 0 333 293 20 20 chr4 37893333 37893432 -146395230 - MER91B DNA MER1_type -2 188 90 321 289 79 0 chr4 37893465 37893579 -146395083 - MER91B DNA MER1_type -56 134 12 335 298 21 85 chr4 37893654 37893889 -146394773 + L1MEc LINE L1 1790 2009 -4387 432 188 127 30 chr4 37894023 37894220 -146394442 + Charlie5 DNA MER1_type 2362 2577 -35 424 334 98 54 chr4 37894232 37894306 -146394356 - L2 LINE L2 -850 2464 2395 2074 165 105 0 chr4 37894306 37894688 -146393974 - MSTB LTR MaLR -2 424 3 424 334 98 54 chr4 37894688 37894981 -146393681 - L2 LINE L2 -919 2395 2081 17492 103 20 2 chr4 37895495 37898324 -146390338 - L1P LINE L1 -2165 3981 1104 212 295 76 9 chr4 37898429 37898534 -146390128 + MIR SINE MIR 148 259 -3 234 340 53 40 chr4 37898552 37898702 -146389960 + L3 LINE CR1 1382 1533 -44 205 250 0 0 chr4 37899920 37899968 -146388694 + MIR SINE MIR 157 204 -58 4605 198 22 30 chr4 37900713 37901892 -146386770 + L1 LINE L1 3284 4453 -1693 542 167 56 21 chr4 37902018 37902162 -146386500 + L1MB8 LINE L1 2868 3016 -3130 4363 187 33 26 chr4 37902171 37903016 -146385646 + L1MB8 LINE L1 4267 5105 -1073 2240 100 7 3 chr4 37903016 37903316 -146385346 - AluSq SINE Alu -12 301 1 4363 187 33 26 chr4 37903316 37904421 -146384241 + L1MB8 LINE L1 5105 6178 0 633 261 85 28 chr4 37905872 37906048 -146382614 - MER5A DNA MER1_type 0 189 4 1352 152 38 60 chr4 37906053 37906189 -146382473 + AluJo SINE Alu 1 138 -174 312 27 0 0 chr4 37906189 37906226 -146382436 + (TAA)n Simple_repeat Simple_repeat 2 38 0 1352 152 38 60 chr4 37906226 37906404 -146382258 + AluJo SINE Alu 138 308 -4 216 0 0 0 chr4 37907706 37907730 -146380932 + (CCG)n Simple_repeat Simple_repeat 1 24 0 200 154 26 51 chr4 37909972 37910011 -146378651 - L2 LINE L2 -620 2694 2657 394 141 0 0 chr4 37910794 37910865 -146377797 + LOR1a LTR ERV1 238 308 -189 892 153 158 18 chr4 37910878 37911106 -146377556 + LOR1a LTR ERV1 238 497 0 440 305 98 66 chr4 37911179 37911484 -146377178 + L2 LINE L2 2935 3249 -23 565 283 0 13 chr4 37912261 37912413 -146376249 + MIR SINE MIR 113 262 0 302 323 8 62 chr4 37913124 37913254 -146375408 - MIR SINE MIR -80 182 60 25 0 0 0 chr4 37913445 37913470 -146375192 + AT_rich Low_complexity Low_complexity 1 25 0 341 305 68 0 chr4 37915175 37915293 -146373369 - MIR SINE MIR -109 153 28 226 271 112 0 chr4 37915344 37915451 -146373211 - L3 LINE CR1 -251 1326 1208 552 286 106 5 chr4 37915471 37915670 -146372992 + L2 LINE L2 2565 2783 -531 715 273 106 57 chr4 37915824 37916212 -146372450 + L2 LINE L2 2836 3242 -71 401 218 213 11 chr4 37918656 37918830 -146369832 - MER3 DNA MER1_type 0 209 1 7291 88 9 12 chr4 37919269 37920574 -146368088 + L1P3 LINE L1 741 2043 -4418 213 281 52 94 chr4 37921362 37921554 -146367108 + L2 LINE L2 2850 3033 -239 * 612 261 73 139 chr4 37921541 37921754 -146366908 + L2 LINE L2 2827 3052 -261 3692 59 8 0 chr4 37921754 37922232 -146366430 - L1PA7 LINE L1 0 6154 5673 310 71 0 0 chr4 37922232 37922274 -146366388 + L1P3 LINE L1 1370 1411 -5050 612 261 73 139 chr4 37922274 37922536 -146366126 + L2 LINE L2 3050 3310 -3 206 260 0 115 chr4 37922565 37922661 -146366001 + L2 LINE L2 3010 3094 -178 787 266 133 42 chr4 37922689 37923072 -146365590 - L2 LINE L2 0 3313 2896 365 153 0 0 chr4 37923072 37923131 -146365531 + Alu SINE Alu 235 293 -9 250 279 284 5 chr4 37923134 37923342 -146365320 - L2 LINE L2 -413 2901 2636 182 353 69 10 chr4 37924046 37924148 -146364514 + L2 LINE L2 2552 2659 -655 * 297 305 67 0 chr4 37924144 37924249 -146364413 + L2 LINE L2 3144 3255 -17 12904 145 30 25 chr4 37925084 37927317 -146361345 + L1M1 LINE L1 15 2258 -5307 180 315 208 0 chr4 37927910 37928040 -146360622 - L2 LINE L2 -558 2756 2600 685 275 0 25 chr4 37929248 37929408 -146359254 - MIR3 SINE MIR -21 187 32 1570 216 102 30 chr4 37929533 37930033 -146358629 - MLT1H LTR MaLR -1 548 13 424 302 60 28 chr4 37930056 37930238 -146358424 - MIR SINE MIR -61 201 14 547 209 9 0 chr4 37930746 37930851 -146357811 + MER5A DNA MER1_type 4 109 -80 241 188 267 40 chr4 37930777 37930878 -146357784 - MER5A DNA MER1_type -23 166 43 * 6322 92 26 6 chr4 37931001 37932652 -146356010 - L1PA10 LINE L1 0 6168 4495 4775 114 50 38 chr4 37932766 37934343 -146354319 + L1PA16 LINE L1 4564 6157 -9 2197 83 0 51 chr4 37934363 37934677 -146353985 + AluSg SINE Alu 1 298 -12 306 0 0 0 chr4 37935213 37935247 -146353415 + (CA)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chr4 37935998 37936019 -146352643 + AT_rich Low_complexity Low_complexity 1 21 0 1470 233 70 86 chr4 37937098 37938024 -146350638 + L1M4 LINE L1 2214 3124 -3022 292 232 18 98 chr4 37938103 37938215 -146350447 - MIR3 SINE MIR -8 200 98 315 361 71 13 chr4 37938272 37938427 -146350235 - MIR SINE MIR -79 183 20 187 303 90 34 chr4 37938921 37939010 -146349652 - L2 LINE L2 -11 3261 3168 805 184 87 4 chr4 37939792 37940011 -146348651 - L1PB4 LINE L1 -4 6152 5897 2276 107 7 0 chr4 37941583 37941893 -146346769 - AluSx SINE Alu 0 312 1 640 237 30 12 chr4 37943398 37943598 -146345064 - MIR SINE MIR 0 262 13 2256 165 41 10 chr4 37944347 37944760 -146343902 + MSTB LTR MaLR 1 426 0 537 294 42 71 chr4 37945694 37945895 -146342767 - MIR SINE MIR -31 231 37 2485 57 3 0 chr4 37945895 37946195 -146342467 - AluY SINE Alu -10 301 1 537 294 42 71 chr4 37946195 37946231 -146342431 - MIR SINE MIR -225 37 1 430 313 74 14 chr4 37946255 37946622 -146342040 - L1ME4a LINE L1 -251 5870 5482 223 241 124 69 chr4 37946953 37947098 -146341564 + MIR SINE MIR 103 255 -7 208 296 148 0 chr4 37947167 37947255 -146341407 + L2 LINE L2 3141 3241 -31 2357 78 10 7 chr4 37947778 37948073 -146340589 + AluSp SINE Alu 1 296 -17 37 99 0 0 chr4 37948095 37948216 -146340446 + AT_rich Low_complexity Low_complexity 1 121 0 710 116 41 7 chr4 37948220 37948367 -146340295 + L1MA7 LINE L1 6136 6287 -4 614 271 66 0 chr4 37949634 37949800 -146338862 - MIR SINE MIR -66 196 20 257 337 42 36 chr4 37949825 37950018 -146338644 - MIR SINE MIR -50 212 19 551 252 144 31 chr4 37950468 37950690 -146337972 - MIR SINE MIR 0 262 16 682 323 24 24 chr4 37950782 37951030 -146337632 + MIR SINE MIR 15 262 0 337 299 119 11 chr4 37951090 37951267 -146337395 - MIR SINE MIR -65 197 2 1868 150 0 10 chr4 37953099 37953424 -146335238 - AluJb SINE Alu 0 312 1 846 123 5 9 chr4 37954375 37954544 -146334118 - L1PA10 LINE L1 0 6172 6006 461 176 17 42 chr4 37955377 37955496 -146333166 + L1MA8 LINE L1 6176 6291 0 515 133 0 0 chr4 37956346 37956421 -146332241 - AluJ/FLAM SINE Alu -232 80 6 1723 142 16 13 chr4 37956570 37956873 -146331789 - AluSq SINE Alu -9 304 1 1966 101 4 0 chr4 37956895 37957153 -146331509 - AluSx SINE Alu -10 302 44 712 185 5 116 chr4 37957195 37957384 -146331278 + MIR SINE MIR 45 212 -50 2094 132 14 0 chr4 37957411 37957706 -146330956 - AluSx SINE Alu -13 299 1 440 64 9 55 chr4 37957836 37957945 -146330717 + (TA)n Simple_repeat Simple_repeat 2 105 0 627 170 66 33 chr4 37957946 37958128 -146330534 - L1MB4 LINE L1 -17 6163 5976 216 298 61 61 chr4 37958231 37958362 -146330300 - L2 LINE L2 -197 3116 2986 2069 109 3 33 chr4 37959006 37959310 -146329352 - AluSx SINE Alu -17 295 1 221 191 0 63 chr4 37959437 37959500 -146329162 + (TATATG)n Simple_repeat Simple_repeat 6 64 0 754 209 19 0 chr4 37959709 37959867 -146328795 - MER5B DNA MER1_type -17 161 1 445 308 53 8 chr4 37959870 37960003 -146328659 - MIR3 SINE MIR -6 202 64 239 284 49 0 chr4 37960893 37960974 -146327688 - MIR3 SINE MIR -13 195 111 2086 105 18 7 chr4 37961142 37961428 -146327234 + AluSx SINE Alu 1 289 -23 780 142 108 85 chr4 37961595 37961807 -146326855 - MER20 DNA MER1_type -2 217 1 2040 125 26 7 chr4 37964017 37964322 -146324340 - AluSx SINE Alu -1 311 1 722 63 0 0 chr4 37964732 37964827 -146323835 + AluSp/q SINE Alu 214 308 -5 289 53 0 0 chr4 37965121 37965159 -146323503 - L1P LINE L1 -1673 4473 4436 232 230 18 124 chr4 37965851 37965964 -146322698 - MIR SINE MIR -75 187 87 1266 91 157 19 chr4 37966396 37966606 -146322056 + AluSc SINE Alu 63 301 -8 524 271 69 21 chr4 37966609 37966797 -146321865 - MIR3 SINE MIR -4 204 8 205 345 23 11 chr4 37966845 37966932 -146321730 + MIR SINE MIR 2 89 -173 408 255 66 19 chr4 37967906 37968012 -146320650 + MIR SINE MIR 36 146 -116 197 237 51 17 chr4 37968015 37968074 -146320588 + MIR SINE MIR 105 165 -97 276 247 164 0 chr4 37968901 37968974 -146319688 - L2 LINE L2 -5 3267 3183 26 74 0 0 chr4 37969863 37969917 -146318745 + AT_rich Low_complexity Low_complexity 1 54 0 449 302 180 25 chr4 37970075 37970353 -146318309 - L2 LINE L2 -536 2778 2458 2191 123 0 0 chr4 37970438 37970730 -146317932 + AluSx SINE Alu 1 292 -20 640 299 5 33 chr4 37971128 37971312 -146317350 - MIR3 SINE MIR -14 194 16 1723 145 104 9 chr4 37972581 37972898 -146315764 + MER7A DNA MER2_type 1 345 -1 193 267 0 0 chr4 37974183 37974228 -146314434 - L2 LINE L2 -2 3311 3267 714 229 136 60 chr4 37974343 37974712 -146313950 - MER57A LTR ERV1 -3 400 1 251 250 0 44 chr4 37974761 37974829 -146313833 - L2 LINE L2 -20 3293 3229 190 337 58 0 chr4 37974985 37975071 -146313591 - L2 LINE L2 -213 3059 2969 272 279 143 7 chr4 37975114 37975261 -146313401 + MIR3 SINE MIR 33 199 -9 372 297 155 71 chr4 37975460 37975756 -146312906 + L2 LINE L2 1443 1713 -1601 192 40 0 0 chr4 37975756 37975781 -146312881 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 372 297 155 71 chr4 37975781 37976064 -146312598 + L2 LINE L2 1713 2071 -1243 23 0 0 0 chr4 37976512 37976535 -146312127 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr4 37976852 37976876 -146311786 + AT_rich Low_complexity Low_complexity 1 24 0 1781 159 85 37 chr4 37977314 37977692 -146310970 + MSTD LTR MaLR 1 396 0 296 273 45 0 chr4 37977888 37977954 -146310708 - MIR SINE MIR -3 259 191 250 239 53 97 chr4 37977964 37978077 -146310585 - MIR SINE MIR -88 120 13 262 217 26 17 chr4 37979195 37979310 -146309352 + (TTATA)n Simple_repeat Simple_repeat 3 118 0 432 225 178 94 chr4 37979797 37979988 -146308674 + MIR SINE MIR 1 207 -55 27 73 0 0 chr4 37980019 37980074 -146308588 + AT_rich Low_complexity Low_complexity 1 55 0 3391 164 30 34 chr4 37980104 37980842 -146307820 + L1MB8 LINE L1 5443 6177 -1 26 0 0 0 chr4 37981377 37981403 -146307259 + AT_rich Low_complexity Low_complexity 1 26 0 377 326 116 45 chr4 37982851 37983233 -146305429 - L2 LINE L2 -332 2981 2561 2322 132 62 94 chr4 37983394 37983473 -146305189 - LTR19A LTR ERV1 -1 485 405 2155 133 7 0 chr4 37983473 37983782 -146304880 + AluSx SINE Alu 1 311 -1 2322 132 62 94 chr4 37983782 37984203 -146304459 - LTR19A LTR ERV1 -81 405 1 516 188 21 0 chr4 37984249 37984345 -146304317 - MER103 DNA DNA -65 101 4 1865 100 4 26 chr4 37984485 37984756 -146303906 + AluSc SINE Alu 45 309 0 832 251 31 35 chr4 37984762 37985021 -146303641 - MLT1B LTR MaLR -90 300 43 2691 114 8 11 chr4 37985022 37985398 -146303264 + THE1C LTR MaLR 1 375 0 4707 126 65 15 chr4 37985398 37986142 -146302520 + THE1C-int LTR MaLR 1 781 -799 688 100 18 9 chr4 37986126 37986236 -146302426 + THE1C-int LTR MaLR 1470 1580 0 * 2846 102 8 8 chr4 37986236 37986609 -146302053 + THE1C LTR MaLR 1 373 -2 287 170 0 0 chr4 37986609 37986656 -146302006 - MLT1B LTR MaLR -342 48 2 2361 92 0 0 chr4 37988065 37988359 -146300303 + AluSq SINE Alu 1 294 -19 2104 127 9 12 chr4 37988583 37988914 -146299748 + MLT2D LTR ERVL 1 330 -84 270 81 0 0 chr4 37989103 37989140 -146299522 + (TC)n Simple_repeat Simple_repeat 1 37 0 497 274 61 6 chr4 37989375 37989539 -146299123 - MIR SINE MIR -3 259 87 2468 74 0 3 chr4 37989539 37989862 -146298800 + L1PA8 LINE L1 5767 6088 -84 255 311 27 0 chr4 37989863 37989937 -146298725 - MIR SINE MIR -173 89 14 712 240 56 22 chr4 37991082 37991261 -146297401 + MER5A DNA MER1_type 4 188 -1 267 176 0 0 chr4 37992202 37992253 -146296409 - MSTB2 LTR MaLR -406 51 1 1285 236 59 44 chr4 37993224 37993614 -146295048 + MSTD LTR MaLR 1 396 0 373 310 54 38 chr4 37993968 37994152 -146294510 + MIR3 SINE MIR 16 202 -6 577 220 50 14 chr4 37994445 37994586 -146294076 - L2 LINE L2 -9 3304 3159 219 346 28 37 chr4 37995418 37995525 -146293137 + MIR SINE MIR 5 110 -152 2747 135 24 7 chr4 37995929 37996350 -146292312 - MSTA LTR MaLR 0 428 1 648 0 0 0 chr4 37996733 37996805 -146291857 + (AATAG)n Simple_repeat Simple_repeat 4 75 0 346 250 14 0 chr4 37996855 37996927 -146291735 - MER5A DNA MER1_type -57 132 60 272 263 0 13 chr4 37996927 37997003 -146291659 - MER112 DNA MER1_type -178 82 8 264 208 28 14 chr4 37997489 37997561 -146291101 + L1MC5 LINE L1 7135 7207 -754 421 242 68 19 chr4 37997665 37997700 -146290962 + L1MC5 LINE L1 7268 7300 -661 4339 57 44 11 chr4 37997700 37997931 -146290731 + L1PA8 LINE L1 5593 5815 -357 2158 122 7 0 chr4 37997931 37998226 -146290436 + AluSp SINE Alu 5 301 -12 4339 57 44 11 chr4 37998226 37998542 -146290120 + L1PA8 LINE L1 5815 6158 -14 421 242 68 19 chr4 37998542 37998667 -146289995 + L1MC5 LINE L1 7300 7436 -525 716 179 107 7 chr4 37998690 37998830 -146289832 - MER5A DNA MER1_type -35 154 1 10749 117 25 4 chr4 37999050 38000631 -146288031 + L1P3 LINE L1 8 1621 -4840 509 140 0 70 chr4 38001025 38001102 -146287560 + MLT1A1 LTR MaLR 1 71 -294 2255 117 56 39 chr4 38001102 38001460 -146287202 - THE1B LTR MaLR 0 364 1 509 140 0 70 chr4 38001460 38001482 -146287180 + MLT1A1 LTR MaLR 71 93 -272 970 165 44 6 chr4 38001491 38001673 -146286989 + MSTA LTR MaLR 238 426 -2 * 1445 182 0 0 chr4 38001673 38001892 -146286770 + MLT1A1 LTR MaLR 145 363 -2 2362 137 42 16 chr4 38002183 38002569 -146286093 + MSTD LTR MaLR 1 396 0 249 248 71 105 chr4 38004187 38004397 -146284265 - L1MC4 LINE L1 -12 8030 7828 1564 148 86 148 chr4 38004453 38005035 -146283627 - L1ME2 LINE L1 -14 6150 5605 964 198 14 55 chr4 38005809 38006026 -146282636 - MER8 DNA MER2_type 0 239 32 1265 132 26 0 chr4 38006026 38006215 -146282447 + L1MB1 LINE L1 5974 6167 -1 214 289 12 36 chr4 38006610 38006693 -146281969 - L2 LINE L2 -2 3311 3231 495 261 106 6 chr4 38007096 38007257 -146281405 - MIR SINE MIR -45 217 41 638 239 139 79 chr4 38007973 38008504 -146280158 - HAL1 LINE L1 0 2507 1945 872 211 142 37 chr4 38008555 38008935 -146279727 - HAL1 LINE L1 -1079 1428 1009 1166 113 0 0 chr4 38008980 38009139 -146279523 - AluSg/x SINE Alu -10 302 144 1667 272 74 57 chr4 38009210 38009942 -146278720 - HAL1 LINE L1 -1636 871 128 305 296 0 56 chr4 38009971 38010079 -146278583 + L1MC4 LINE L1 6615 6716 -1326 251 315 14 0 chr4 38010081 38010154 -146278508 - HAL1 LINE L1 -2428 79 6 27 29 0 0 chr4 38010257 38010291 -146278371 + AT_rich Low_complexity Low_complexity 1 34 0 3208 108 14 20 chr4 38010585 38011076 -146277586 - L1MA2 LINE L1 -222 6082 5595 * 5927 132 26 45 chr4 38011073 38011884 -146276778 - L1PA13 LINE L1 0 6163 5339 7080 48 37 6 chr4 38011884 38012810 -146275852 + L1PA7 LINE L1 5202 6154 0 5927 132 26 45 chr4 38012810 38013870 -146274792 - L1PA13 LINE L1 -824 5339 4320 3515 131 6 20 chr4 38013870 38014414 -146274248 - L1PB1 LINE L1 0 6854 6319 14246 173 36 52 chr4 38014416 38016994 -146271668 - L1PB1 LINE L1 -593 6261 3759 2320 82 3 10 chr4 38016994 38017299 -146271363 - AluY SINE Alu -8 303 1 14246 173 36 52 chr4 38017299 38018281 -146270381 - L1PB1 LINE L1 -3095 3759 2762 2304 119 9 24 chr4 38018281 38018618 -146270044 + MER1B DNA MER1_type 1 332 -7 819 181 7 0 chr4 38018619 38018774 -146269888 - L1PB1 LINE L1 -4081 2768 2613 * 9533 195 63 5 chr4 38018767 38020514 -146268148 - L1PB1 LINE L1 -4935 1904 55 8524 217 43 21 chr4 38020585 38022365 -146266297 - L1M1 LINE L1 -697 7027 5287 2500 104 48 22 chr4 38022365 38022720 -146265942 - THE1B LTR MaLR 0 364 1 8524 217 43 21 chr4 38022720 38025155 -146263507 - L1M1 LINE L1 -2437 5287 2612 187 114 45 0 chr4 38028886 38028930 -146259732 + CT-rich Low_complexity Low_complexity 3 48 0 2389 89 3 0 chr4 38029586 38029889 -146258773 - AluSp SINE Alu -9 304 1 1967 101 0 0 chr4 38030611 38030868 -146257794 + AluSx SINE Alu 1 257 -55 298 59 44 29 chr4 38030870 38030938 -146257724 + (TA)n Simple_repeat Simple_repeat 2 70 0 272 192 0 0 chr4 38031062 38031114 -146257548 + AluSx SINE Alu 256 307 -1 23 33 0 0 chr4 38031223 38031253 -146257409 + AT_rich Low_complexity Low_complexity 1 30 0 2282 111 3 0 chr4 38031369 38031501 -146257161 + AluSx SINE Alu 1 131 -181 2271 67 0 0 chr4 38031501 38031771 -146256891 + AluY SINE Alu 38 307 -4 2282 111 3 0 chr4 38031771 38031945 -146256717 + AluSx SINE Alu 131 308 -4 2400 41 3 60 chr4 38033003 38033320 -146255342 + AluY SINE Alu 1 299 -12 2282 99 0 3 chr4 38033801 38034118 -146254544 + AluSq SINE Alu 1 313 0 1231 150 5 38 chr4 38034194 38034407 -146254255 - AluJb SINE Alu -21 291 86 201 237 0 0 chr4 38034409 38034447 -146254215 + MIR SINE MIR 108 145 -63 258 211 19 0 chr4 38035525 38035577 -146253085 - L2 LINE L2 -23 3249 3197 195 42 0 0 chr4 38035623 38035647 -146253015 + (GA)n Simple_repeat Simple_repeat 1 24 0 608 274 68 26 chr4 38035712 38035946 -146252716 + MIR SINE MIR 2 245 -17 465 226 107 60 chr4 38035964 38036132 -146252530 - MIR SINE MIR -17 245 70 264 30 0 0 chr4 38036203 38036236 -146252426 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 2107 121 10 3 chr4 38036416 38036713 -146251949 + AluSx SINE Alu 1 299 -13 1987 139 0 7 chr4 38036737 38037031 -146251631 + AluSx SINE Alu 21 312 0 3480 75 18 9 chr4 38037129 38037569 -146251093 - MLT2A1 LTR ERVL 0 444 1 285 75 0 0 chr4 38038302 38038342 -146250320 + (TG)n Simple_repeat Simple_repeat 2 41 0 197 222 0 0 chr4 38038409 38038445 -146250217 - MER5A DNA MER1_type -102 87 52 2312 111 0 0 chr4 38038491 38038797 -146249865 + AluSq SINE Alu 1 306 -7 260 241 23 23 chr4 38038866 38038953 -146249709 + MIR SINE MIR 168 254 -8 2265 115 0 3 chr4 38038994 38039307 -146249355 - AluSq SINE Alu -1 312 1 999 204 53 22 chr4 38039670 38040107 -146248555 + MLT1A2 LTR MaLR 2 390 0 311 300 0 0 chr4 38040434 38040504 -146248158 - L2 LINE L2 -3 3269 3200 360 317 34 58 chr4 38040707 38040912 -146247750 + L2 LINE L2 2559 2758 -556 2989 218 52 8 chr4 38041023 38041642 -146247020 - MER82 DNA MER2_type -7 646 1 182 298 67 29 chr4 38041727 38041831 -146246831 + L2 LINE L2 2852 2959 -313 292 232 232 30 chr4 38043580 38043679 -146244983 - MER5A DNA MER1_type -3 186 68 191 86 0 29 chr4 38043681 38043716 -146244946 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 7898 16 1 0 chr4 38043716 38044811 -146243851 - L1PA3 LINE L1 -24 6131 5036 435 147 0 0 chr4 38044811 38044886 -146243776 - MER5A DNA MER1_type -114 75 1 1641 178 143 6 chr4 38045615 38045936 -146242726 + MLT1A1 LTR MaLR 1 365 0 2213 103 13 3 chr4 38046735 38047045 -146241617 + AluSq SINE Alu 1 313 0 260 268 14 14 chr4 38047151 38047222 -146241440 - L2 LINE L2 -2 3270 3200 242 298 89 70 chr4 38047760 38047918 -146240744 - MIR3 SINE MIR -30 178 18 329 328 187 11 chr4 38048015 38048277 -146240385 - L2 LINE L2 -21 3292 2985 319 346 87 16 chr4 38048420 38048605 -146240057 + L2 LINE L2 2850 3047 -225 2023 115 14 0 chr4 38048652 38048952 -146239710 + AluSx SINE Alu 1 304 0 2575 106 43 3 chr4 38048976 38049326 -146239336 - THE1B LTR MaLR 0 364 1 193 314 65 65 chr4 38049340 38049493 -146239169 + L2 LINE L2 3126 3278 -35 902 182 0 28 chr4 38049594 38049775 -146238887 + MER104 DNA MER2_type 5 180 0 205 246 70 0 chr4 38050825 38050882 -146237780 + MIR SINE MIR 98 158 -104 3919 79 21 2 chr4 38050882 38051363 -146237299 - LTR2B LTR ERV1 0 490 1 17509 129 11 8 chr4 38051363 38054007 -146234655 - Harlequin LTR ERV1 0 6896 4246 4691 67 30 0 chr4 38053992 38054587 -146234075 - Harlequin LTR ERV1 -2942 3954 3342 * 7191 56 16 17 chr4 38054577 38055581 -146233081 - Harlequin LTR ERV1 -4322 2574 1572 4803 66 34 6 chr4 38055566 38056190 -146232472 - Harlequin LTR ERV1 -5993 903 263 * 750 138 21 35 chr4 38056170 38056315 -146232347 - HERVE LTR ERV1 -7416 397 255 * 2460 103 44 16 chr4 38056286 38056674 -146231988 - HERVE LTR ERV1 -6497 399 1 3794 92 21 2 chr4 38056674 38057155 -146231507 - LTR2B LTR ERV1 0 490 1 184 320 82 0 chr4 38057155 38057252 -146231410 + MIR SINE MIR 155 259 -3 206 227 0 0 chr4 38057259 38057303 -146231359 + (CAT)n Simple_repeat Simple_repeat 3 46 0 725 286 127 40 chr4 38057755 38058133 -146230529 + HAL1 LINE L1 213 623 -1884 2094 129 10 3 chr4 38058188 38058499 -146230163 + AluSp SINE Alu 1 313 0 2780 235 92 43 chr4 38058683 38059496 -146229166 + HAL1 LINE L1 1044 1921 -586 2309 38 45 21 chr4 38059496 38059785 -146228877 - AluY SINE Alu -15 296 1 2780 235 92 43 chr4 38059785 38060016 -146228646 + HAL1 LINE L1 1921 2139 -368 290 190 10 70 chr4 38060115 38060215 -146228447 + HAL1 LINE L1 2281 2374 -133 228 237 43 108 chr4 38060374 38060467 -146228195 - L2 LINE L2 0 3272 3186 1075 185 39 19 chr4 38060601 38060806 -146227856 - MER3 DNA MER1_type 0 209 1 2521 157 26 47 chr4 38061108 38061574 -146227088 + LTR32 LTR ERVL 14 469 -2 399 244 34 42 chr4 38061574 38061693 -146226969 + MIR SINE MIR 14 131 -131 591 186 16 0 chr4 38063348 38063472 -146225190 + L1MA6 LINE L1 6101 6226 -74 2178 176 14 102 chr4 38063579 38063677 -146224985 - LTR32 LTR ERVL 0 471 366 2262 96 10 0 chr4 38063677 38063970 -146224692 - AluSx SINE Alu -16 296 1 2178 176 14 102 chr4 38063970 38064372 -146224290 - LTR32 LTR ERVL -105 366 15 204 40 0 0 chr4 38065252 38065277 -146223385 + (TG)n Simple_repeat Simple_repeat 1 25 0 339 213 0 0 chr4 38065285 38065365 -146223297 + (ATGGTG)n Simple_repeat Simple_repeat 2 81 0 347 326 89 42 chr4 38065374 38065564 -146223098 - MIR SINE MIR -18 244 46 953 184 18 0 chr4 38066545 38066708 -146221954 + MER58B DNA MER1_type 174 339 -2 1163 184 60 17 chr4 38066795 38067029 -146221633 + MLT1F1 LTR MaLR 322 565 -2 753 242 88 23 chr4 38067296 38067511 -146221151 - MIR SINE MIR -6 256 28 219 283 78 20 chr4 38067511 38067653 -146221009 + MIR SINE MIR 41 183 -58 859 210 6 6 chr4 38067945 38068102 -146220560 - FRAM SINE Alu -19 157 1 245 329 24 12 chr4 38068334 38068416 -146220246 + L2 LINE L2 3230 3312 -1 1912 208 19 8 chr4 38068456 38068817 -146219845 + MLT1A1 LTR MaLR 1 365 0 38 39 0 0 chr4 38070182 38070234 -146218428 + AT_rich Low_complexity Low_complexity 1 52 0 871 154 74 12 chr4 38070239 38070401 -146218261 - L1PB1 LINE L1 -8 6143 5972 3251 203 119 9 chr4 38070728 38071428 -146217234 + MER63C DNA MER1_type 2 813 -247 2577 59 0 0 chr4 38071428 38071733 -146216929 - AluY SINE Alu -6 305 1 3251 203 119 9 chr4 38071733 38071857 -146216805 + MER63C DNA MER1_type 813 922 -8 249 311 27 61 chr4 38072095 38072243 -146216419 + MIR SINE MIR 118 260 -2 2034 127 0 25 chr4 38072333 38072649 -146216013 - AluSx SINE Alu -4 308 1 2085 140 3 7 chr4 38072745 38073053 -146215609 - AluSx SINE Alu -5 307 1 336 233 75 42 chr4 38073404 38073524 -146215138 + MIR SINE MIR 124 247 -15 7161 142 37 7 chr4 38075305 38075501 -146213161 - Tigger3b DNA MER2_type -1814 1214 1025 2354 56 3 36 chr4 38075501 38075805 -146212857 - AluY SINE Alu -17 294 1 7161 142 37 7 chr4 38075805 38076786 -146211876 - Tigger3b DNA MER2_type -2003 1025 1 198 0 0 0 chr4 38078407 38078429 -146210233 + (TTCCC)n Simple_repeat Simple_repeat 4 25 0 1660 213 117 35 chr4 38078673 38079162 -146209500 + MLT1F LTR MaLR 14 542 0 1225 211 131 21 chr4 38079314 38079651 -146209011 + MLT1A2 LTR MaLR 1 374 0 7297 203 92 13 chr4 38079771 38081295 -146207367 + L1MA1 LINE L1 16 1659 -5906 10698 155 17 17 chr4 38081315 38082426 -146206236 + L1MA1 LINE L1 3724 4834 -2887 2382 100 0 0 chr4 38082426 38082736 -146205926 + AluY SINE Alu 1 310 -1 10698 155 17 17 chr4 38082736 38085719 -146202943 + L1MA1 LINE L1 4834 7721 0 381 95 0 0 chr4 38086023 38086086 -146202576 + (TA)n Simple_repeat Simple_repeat 1 63 0 2194 78 25 3 chr4 38086086 38086368 -146202294 - AluSq SINE Alu -25 288 1 228 297 10 20 chr4 38086734 38086835 -146201827 + Charlie7 DNA MER1_type 1 100 -2512 215 254 31 27 chr4 38086997 38087138 -146201524 - MER5A DNA MER1_type 0 189 4 202 158 0 26 chr4 38087766 38087804 -146200858 + (TATAG)n Simple_repeat Simple_repeat 2 38 0 709 271 6 11 chr4 38087816 38087997 -146200665 + MLT1G1 LTR MaLR 1 180 -415 * 1667 186 29 14 chr4 38087987 38088332 -146200330 - MLT1A1 LTR MaLR -15 350 1 710 268 208 52 chr4 38088332 38088698 -146199964 + MLT1G1 LTR MaLR 162 584 -11 603 174 19 3 chr4 38088973 38089115 -146199547 + MSTC LTR MaLR 1 147 -218 221 356 30 30 chr4 38089119 38089254 -146199408 - MIR SINE MIR -115 147 13 476 161 11 11 chr4 38089283 38089376 -146199286 + MSTD LTR MaLR 292 384 -12 210 298 58 29 chr4 38089560 38089664 -146198998 + L2 LINE L2 1842 1948 -1366 1480 207 29 31 chr4 38089665 38090051 -146198611 + MLT1B LTR MaLR 1 385 -5 188 336 92 25 chr4 38090094 38090213 -146198449 + MIR SINE MIR 21 147 -115 1352 148 4 13 chr4 38090221 38090451 -146198211 - AluSp SINE Alu 0 313 86 2554 65 0 0 chr4 38091410 38091717 -146196945 - AluY SINE Alu -4 307 1 281 307 11 11 chr4 38092076 38092164 -146196498 - L2 LINE L2 -1 3271 3184 1320 187 19 19 chr4 38092194 38092462 -146196200 + MLT1A1 LTR MaLR 3 270 -95 21 36 0 0 chr4 38093394 38093422 -146195240 + AT_rich Low_complexity Low_complexity 1 28 0 582 289 82 97 chr4 38094734 38095371 -146193291 + L2 LINE L2 2681 3307 -6 301 289 44 0 chr4 38095899 38095989 -146192673 - MIR SINE MIR -18 244 151 260 281 82 14 chr4 38097104 38097250 -146191412 + L1MEd LINE L1 919 1074 -5045 273 290 26 47 chr4 38097445 38097638 -146191024 + L1MEd LINE L1 1067 1255 -4864 27 73 0 0 chr4 38097720 38097775 -146190887 + AT_rich Low_complexity Low_complexity 1 55 0 3725 162 90 28 chr4 38097955 38098765 -146189897 - L1MA9 LINE L1 -51 6261 5402 413 288 50 18 chr4 38099744 38099963 -146188699 + L1ME4a LINE L1 5526 5751 -370 301 288 12 12 chr4 38099997 38100077 -146188585 + L1ME4a LINE L1 5840 5919 -202 2050 142 0 3 chr4 38100077 38100372 -146188290 + AluSx SINE Alu 1 294 -18 24 32 0 0 chr4 38100551 38100582 -146188080 + AT_rich Low_complexity Low_complexity 1 31 0 2215 117 0 0 chr4 38100661 38100952 -146187710 + AluSx SINE Alu 1 291 -21 237 355 36 30 chr4 38101019 38101185 -146187477 - MER5A DNA MER1_type 0 189 23 186 349 56 40 chr4 38102926 38103052 -146185610 - MER5A DNA MER1_type -29 160 33 189 184 0 0 chr4 38103280 38103318 -146185344 - L2 LINE L2 -3 3310 3273 773 123 0 0 chr4 38104462 38104584 -146184078 + L1MB5 LINE L1 6052 6173 -1 328 229 9 0 chr4 38105499 38105576 -146183086 + MER91B DNA MER1_type 1 81 -59 2211 180 119 17 chr4 38105917 38106389 -146182273 + MLT2B1 LTR ERVL 1 520 0 1004 160 10 0 chr4 38107175 38107381 -146181281 - L1P LINE L1 -1243 4903 4696 * 2062 69 20 33 chr4 38107376 38107682 -146180980 + L1P3 LINE L1 5364 5665 -489 588 229 64 6 chr4 38107699 38107856 -146180806 - L1MC3 LINE L1 -431 7354 7189 282 284 23 0 chr4 38107856 38107944 -146180718 - MLT1F1 LTR MaLR -443 124 35 3208 166 73 32 chr4 38107958 38108743 -146179919 - L1MC3 LINE L1 -685 7100 6284 431 287 70 60 chr4 38108825 38109139 -146179523 - L1ME4a LINE L1 -98 6023 5707 25 75 0 0 chr4 38109167 38109220 -146179442 + AT_rich Low_complexity Low_complexity 1 53 0 4706 88 16 22 chr4 38109220 38109915 -146178747 - L1PB1 LINE L1 -1 6150 5460 231 203 40 0 chr4 38109961 38110035 -146178627 + (TA)n Simple_repeat Simple_repeat 1 77 0 2408 77 0 0 chr4 38110615 38110913 -146177749 - AluY SINE Alu -13 298 1 301 287 106 0 chr4 38111002 38111096 -146177566 - MIR SINE MIR -65 197 94 536 251 37 59 chr4 38111365 38111552 -146177110 + MIR SINE MIR 80 262 0 260 217 12 24 chr4 38111985 38112068 -146176594 - L1MC5 LINE L1 -48 7913 7832 5474 77 4 4 chr4 38112202 38112978 -146175684 - L1PA7 LINE L1 0 6154 5379 1264 229 55 25 chr4 38113596 38113959 -146174703 + MLT1A2 LTR MaLR 1 374 0 187 276 58 35 chr4 38114547 38114634 -146174028 - L2 LINE L2 -900 2414 2326 767 114 0 0 chr4 38114634 38114739 -146173923 + AluY SINE Alu 130 234 -77 197 340 47 9 chr4 38114744 38114850 -146173812 - L2 LINE L2 -980 2334 2225 412 196 71 54 chr4 38114890 38115002 -146173660 - MER81 DNA DNA 0 114 1 2281 117 3 3 chr4 38115033 38115342 -146173320 - AluSc SINE Alu 0 309 1 325 294 54 29 chr4 38115548 38115824 -146172838 + L1ME LINE L1 5312 5594 -527 19204 97 6 1 chr4 38116134 38119025 -146169637 - L1P LINE L1 -790 5356 2451 5406 96 17 2 chr4 38119027 38119854 -146168808 - L1P LINE L1 -3514 2632 1794 2378 171 14 7 chr4 38121147 38121568 -146167094 - MSTB LTR MaLR -2 424 1 313 316 9 9 chr4 38121659 38121773 -146166889 + L2 LINE L2 2606 2719 -595 600 256 35 25 chr4 38121808 38122009 -146166653 - MIR SINE MIR -58 204 2 285 299 0 19 chr4 38122128 38122235 -146166427 + (CATATA)n Simple_repeat Simple_repeat 3 107 0 2235 151 3 3 chr4 38122235 38122600 -146166062 - MER47A DNA MER2_type -1 365 1 754 317 35 9 chr4 38122635 38122862 -146165800 + MIR SINE MIR 4 236 -26 603 320 60 41 chr4 38122909 38123228 -146165434 + L2 LINE L2 2946 3270 -2 187 322 64 64 chr4 38123226 38123428 -146165234 - L2 LINE L2 -182 3090 2889 * 1339 171 23 56 chr4 38123641 38123946 -146164716 + L1PB4 LINE L1 5862 6156 0 239 229 19 48 chr4 38125357 38125462 -146163200 - MER104 DNA Tc2 -78 102 1 2389 67 10 19 chr4 38126651 38126964 -146161698 - AluSq SINE Alu -3 310 1 26 0 0 0 chr4 38126994 38127020 -146161642 + AT_rich Low_complexity Low_complexity 1 26 0 804 230 25 6 chr4 38127156 38127356 -146161306 + MER33 DNA MER1_type 1 197 -97 23 0 0 0 chr4 38127360 38127383 -146161279 + AT_rich Low_complexity Low_complexity 1 23 0 280 169 28 14 chr4 38127574 38127645 -146161017 + MER33 DNA MER1_type 269 340 -23 1845 118 105 7 chr4 38127782 38128088 -146160574 - MER1B DNA MER1_type -1 336 1 348 133 0 0 chr4 38129369 38129429 -146159233 - L1M1 LINE L1 -4874 2691 2632 279 0 0 0 chr4 38129902 38129933 -146158729 + (A)n Simple_repeat Simple_repeat 1 31 0 526 298 45 15 chr4 38130125 38130323 -146158339 - MIR SINE MIR -13 249 46 2207 103 3 3 chr4 38130341 38130633 -146158029 - AluSx SINE Alu -20 292 1 2967 115 67 16 chr4 38130842 38131347 -146157315 - LTR26B LTR ERV1 0 531 1 405 248 117 14 chr4 38131489 38131634 -146157028 + MIR SINE MIR 103 262 0 2329 106 0 0 chr4 38131638 38131940 -146156722 + AluSx SINE Alu 3 304 -8 258 32 0 0 chr4 38132424 38132455 -146156207 + (TG)n Simple_repeat Simple_repeat 2 32 0 452 256 80 0 chr4 38132999 38133136 -146155526 - MIR SINE MIR -12 250 103 244 196 179 71 chr4 38133460 38133572 -146155090 - MLT1K LTR MaLR -19 569 446 1950 166 0 10 chr4 38133580 38133888 -146154774 + AluJb SINE Alu 1 305 -7 283 237 194 0 chr4 38134332 38134445 -146154217 - MIR SINE MIR -64 144 50 1510 192 7 14 chr4 38135455 38135741 -146152921 - AluJb SINE Alu 0 312 29 186 133 0 0 chr4 38136148 38136178 -146152484 + (CA)n Simple_repeat Simple_repeat 2 31 0 2112 208 40 99 chr4 38136235 38136409 -146152253 + L1MC4a LINE L1 6170 6353 -1455 1182 78 0 0 chr4 38136409 38136589 -146152073 + (CA)n Simple_repeat Simple_repeat 1 180 0 2112 208 40 99 chr4 38136589 38137121 -146151541 + L1MC4a LINE L1 6353 6834 -974 1944 154 7 0 chr4 38137128 38137414 -146151248 + AluSx SINE Alu 22 309 -3 807 187 42 6 chr4 38137424 38137720 -146150942 + GA-rich Low_complexity Low_complexity 1 306 0 249 108 0 0 chr4 38137747 38137784 -146150878 + (GGA)n Simple_repeat Simple_repeat 3 39 0 * 497 112 40 24 chr4 38137777 38137902 -146150760 + GA-rich Low_complexity Low_complexity 4 130 0 2096 251 65 15 chr4 38137983 38138026 -146150636 + L1MC4a LINE L1 7102 7141 -667 986 238 27 80 chr4 38138026 38138438 -146150224 + MLT1B LTR MaLR 1 390 0 2096 251 65 15 chr4 38138438 38139067 -146149595 + L1MC4a LINE L1 7141 7808 0 13545 124 47 48 chr4 38139075 38139215 -146149447 + Tigger1 DNA MER2_type 1 140 -2278 2165 119 0 31 chr4 38139215 38139535 -146149127 - AluSg SINE Alu 0 310 1 13545 124 47 48 chr4 38139535 38140294 -146148368 + Tigger1 DNA MER2_type 140 898 -1520 1964 141 53 0 chr4 38140294 38140578 -146148084 - AluSx SINE Alu -13 299 1 13545 124 47 48 chr4 38140578 38142097 -146146565 + Tigger1 DNA MER2_type 898 2418 0 2493 71 0 7 chr4 38143541 38143849 -146144813 + AluY SINE Alu 1 306 -5 231 61 0 0 chr4 38143970 38144003 -146144659 + (A)n Simple_repeat Simple_repeat 1 33 0 2268 110 0 3 chr4 38144003 38144303 -146144359 + AluSx SINE Alu 3 301 -11 195 204 0 0 chr4 38144573 38144617 -146144045 + (CA)n Simple_repeat Simple_repeat 2 45 0 21 0 0 0 chr4 38144911 38144932 -146143730 + AT_rich Low_complexity Low_complexity 1 21 0 204 216 0 0 chr4 38145093 38145130 -146143532 + (CATCC)n Simple_repeat Simple_repeat 3 39 0 451 139 23 0 chr4 38145196 38145282 -146143380 + MSTA LTR MaLR 160 247 -181 561 264 82 24 chr4 38147763 38147971 -146140691 - MIR SINE MIR 0 262 43 365 297 28 33 chr4 38148765 38148947 -146139715 + MER5A DNA MER1_type 1 181 -8 2229 110 0 0 chr4 38149148 38149449 -146139213 + AluSx SINE Alu 1 301 0 425 268 119 43 chr4 38149780 38149857 -146138805 - L1MC4a LINE L1 -341 5780 5710 1569 150 9 98 chr4 38149857 38150184 -146138478 - AluJo SINE Alu -13 299 2 425 268 119 43 chr4 38150184 38150488 -146138174 - L1MC4a LINE L1 -411 5710 5501 2230 90 4 0 chr4 38150515 38150822 -146137840 - AluSp SINE Alu 0 312 5 2318 90 0 0 chr4 38150838 38151128 -146137534 - AluSg SINE Alu -20 290 1 449 227 55 16 chr4 38151145 38151237 -146137425 - MER94 DNA DNA -1 133 33 1734 151 4 15 chr4 38151237 38151508 -146137154 - AluJo SINE Alu -34 278 11 449 227 55 16 chr4 38151508 38151543 -146137119 - MER94 DNA DNA -101 33 1 232 243 81 0 chr4 38151580 38151654 -146137008 - L1P5 LINE L1 -721 5435 5356 626 246 22 28 chr4 38152550 38152729 -146135933 - MIR SINE MIR -84 178 1 2291 108 0 16 chr4 38152822 38153138 -146135524 + AluY SINE Alu 1 311 0 342 272 10 29 chr4 38154335 38154438 -146134224 + L2 LINE L2 3189 3289 -24 2300 102 0 3 chr4 38154445 38154748 -146133914 - AluSg SINE Alu -8 302 1 233 279 90 18 chr4 38155092 38155203 -146133459 + MIR SINE MIR 58 176 -86 2503 53 0 31 chr4 38156053 38156374 -146132288 - AluY SINE Alu 0 311 1 253 285 118 14 chr4 38156650 38156789 -146131873 - MIR3 SINE MIR -45 163 13 1668 139 37 3 chr4 38156900 38157195 -146131467 + L1MA8 LINE L1 5026 5330 -816 298 97 83 56 chr4 38157187 38157259 -146131403 + L1MA8 LINE L1 5982 6055 -236 * 1283 130 40 0 chr4 38157323 38157546 -146131116 + L1MA8 LINE L1 6060 6291 0 5375 146 36 10 chr4 38157566 38157841 -146130821 + L1MA8 LINE L1 5321 5587 -704 2072 138 7 7 chr4 38157841 38158146 -146130516 + AluSx SINE Alu 1 305 -7 5375 146 36 10 chr4 38158146 38158810 -146129852 + L1MA8 LINE L1 5587 6285 -6 505 248 81 50 chr4 38159891 38160113 -146128549 + MIR SINE MIR 33 261 -1 353 301 71 16 chr4 38160960 38161143 -146127519 + MIR SINE MIR 70 262 0 420 302 123 0 chr4 38161514 38161726 -146126936 - MIR SINE MIR 0 262 25 2565 44 0 35 chr4 38162001 38162319 -146126343 - AluY SINE Alu -4 307 1 374 242 130 101 chr4 38162566 38162843 -146125819 + MER102b DNA MER1_type 56 340 -1 2022 150 6 10 chr4 38163439 38163752 -146124910 + AluJb SINE Alu 1 312 0 2136 133 7 0 chr4 38163812 38164114 -146124548 - AluSq SINE Alu -9 304 1 2390 106 0 0 chr4 38164771 38165083 -146123579 + AluSx SINE Alu 1 312 0 489 295 116 11 chr4 38165336 38165526 -146123136 - MIR SINE MIR 0 262 53 493 313 10 21 chr4 38165927 38166119 -146122543 + MLT1J1 LTR MaLR 4 193 -253 394 274 80 34 chr4 38166147 38166322 -146122340 + MLT1J2 LTR MaLR 268 450 0 1859 166 7 3 chr4 38166988 38167284 -146121378 + AluJo SINE Alu 1 297 -15 830 263 5 18 chr4 38167649 38167873 -146120789 - MIR SINE MIR -41 221 1 2552 64 0 0 chr4 38167958 38168256 -146120406 + AluY SINE Alu 1 298 -13 226 316 20 31 chr4 38168700 38168798 -146119864 - L2 LINE L2 -3 3269 3173 232 264 14 42 chr4 38169330 38169402 -146119260 + L2 LINE L2 3242 3311 -2 488 280 50 33 chr4 38169566 38169748 -146118914 - MIR SINE MIR -69 193 9 982 193 14 45 chr4 38169778 38170001 -146118661 + MER20 DNA MER1_type 1 216 -3 22 35 0 0 chr4 38170155 38170184 -146118478 + AT_rich Low_complexity Low_complexity 1 29 0 2442 92 0 0 chr4 38170747 38171053 -146117609 + AluY SINE Alu 1 306 -5 546 246 91 82 chr4 38171559 38171791 -146116871 - MER106B DNA MER1_type -2 1057 1 1456 209 75 3 chr4 38172149 38172470 -146116192 + MER2 DNA MER2_type 1 344 -1 264 271 0 0 chr4 38172875 38172934 -146115728 + (CA)n Simple_repeat Simple_repeat 2 60 0 549 311 38 4 chr4 38173458 38173693 -146114969 - MIR SINE MIR -4 258 16 1453 192 177 85 chr4 38174184 38174901 -146113761 + MER21B LTR ERV1 21 871 -60 326 236 36 64 chr4 38175963 38176071 -146112591 + MIR SINE MIR 64 170 -92 2175 92 18 11 chr4 38176071 38176404 -146112258 - AluSx SINE Alu 0 335 1 326 236 36 64 chr4 38176404 38176434 -146112228 + MIR SINE MIR 170 199 -63 400 275 17 0 chr4 38176529 38176649 -146112013 + MIR SINE MIR 5 126 -136 390 258 177 29 chr4 38177248 38177457 -146111205 + MIR SINE MIR 1 240 -22 918 203 84 4 chr4 38178032 38178259 -146110403 + L1MB3 LINE L1 5932 6176 -7 1903 158 17 0 chr4 38178371 38178669 -146109993 - AluJo SINE Alu -9 303 1 327 244 42 50 chr4 38178669 38178788 -146109874 - MIR SINE MIR -97 165 48 205 188 0 47 chr4 38180595 38180659 -146108003 + (TTAAA)n Simple_repeat Simple_repeat 3 63 0 642 229 63 58 chr4 38181541 38181746 -146106916 + MIR SINE MIR 1 206 -56 378 211 90 75 chr4 38181760 38181893 -146106769 - L2 LINE L2 -12 3301 3167 313 278 26 43 chr4 38181990 38182105 -146106557 - L2 LINE L2 -1 3271 3159 1620 137 7 50 chr4 38182443 38182721 -146105941 + AluSx SINE Alu 36 301 -11 555 157 0 0 chr4 38182819 38182902 -146105760 + AluS SINE Alu 2 84 -228 1054 137 43 0 chr4 38183199 38183360 -146105302 + LTR28 LTR ERV1 1 168 -852 * 1071 180 80 80 chr4 38183357 38183718 -146104944 + LTR27 LTR ERV1 276 636 0 292 219 49 12 chr4 38184561 38184643 -146104019 + MIR SINE MIR 69 153 -109 1769 116 51 18 chr4 38184682 38184957 -146103705 + MER4C LTR ERV1 8 291 -174 930 166 0 6 chr4 38185102 38185259 -146103403 + MER4C LTR ERV1 310 465 0 741 229 60 37 chr4 38185272 38185490 -146103172 + MLT1G1 LTR MaLR 75 297 -298 667 199 41 34 chr4 38185549 38185695 -146102967 + MLT1G1 LTR MaLR 447 593 -2 272 258 30 15 chr4 38185696 38185762 -146102900 + MIR SINE MIR 158 224 -38 1221 163 0 28 chr4 38185805 38186020 -146102642 - MER3 DNA MER1_type 0 209 1 261 225 188 59 chr4 38186294 38186650 -146102012 + L1ME4a LINE L1 5707 6108 -13 191 250 50 117 chr4 38186799 38186919 -146101743 - L2 LINE L2 -828 2486 2375 1870 149 203 20 chr4 38186924 38187319 -146101343 + MLT1C LTR MaLR 1 467 0 191 312 0 13 chr4 38187469 38187546 -146101116 - L2 LINE L2 -1300 2014 1939 3226 157 48 21 chr4 38187546 38188151 -146100511 + L1MB1 LINE L1 5543 6163 -5 1510 205 16 93 chr4 38188187 38188616 -146100046 + MSTD LTR MaLR 1 396 0 203 161 48 32 chr4 38188811 38188873 -146099789 + A-rich Low_complexity Low_complexity 1 63 0 182 261 218 74 chr4 38188879 38189163 -146099499 - L2 LINE L2 -1406 1908 1584 973 180 126 75 chr4 38189299 38189564 -146099098 + AluJb SINE Alu 1 282 -20 183 80 0 0 chr4 38189564 38189589 -146099073 + (CA)n Simple_repeat Simple_repeat 1 25 0 973 180 126 75 chr4 38189589 38189601 -146099061 + AluJb SINE Alu 282 292 -10 455 205 0 0 chr4 38189627 38189705 -146098957 + FLAM_A SINE Alu 21 98 -44 701 215 43 54 chr4 38190100 38190286 -146098376 - MIR SINE MIR -72 190 7 495 250 9 0 chr4 38191230 38191342 -146097320 + MIR3 SINE MIR 62 174 -34 207 0 0 0 chr4 38191720 38191743 -146096919 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 414 210 0 0 chr4 38191853 38191934 -146096728 + MIR SINE MIR 62 142 -66 317 188 30 143 chr4 38192054 38192187 -146096475 + MER46C DNA MER2_type 12 129 -209 2449 65 0 0 chr4 38192393 38192700 -146095962 + AluY SINE Alu 1 307 -4 1844 134 11 3 chr4 38192911 38193223 -146095439 - AluSx SINE Alu 0 314 1 433 305 115 5 chr4 38195190 38195390 -146093272 - MIR SINE MIR -33 229 8 1993 86 45 38 chr4 38195739 38196031 -146092631 + AluSc SINE Alu 1 294 -15 200 348 0 0 chr4 38196644 38196713 -146091949 + L2 LINE L2 3242 3310 -3 431 244 59 37 chr4 38198025 38198160 -146090502 + MIR SINE MIR 74 211 -51 198 336 44 35 chr4 38198189 38198302 -146090360 - L2 LINE L2 -72 3200 3087 984 233 35 19 chr4 38198879 38199137 -146089525 - MIR SINE MIR 0 262 1 6664 64 5 29 chr4 38199845 38201696 -146086966 + SVA Other Other 17 1385 -1 192 77 0 0 chr4 38201699 38201725 -146086937 + (A)n Simple_repeat Simple_repeat 1 26 0 2088 97 0 41 chr4 38202195 38202514 -146086148 - AluSc SINE Alu -3 306 1 775 207 63 40 chr4 38202668 38202890 -146085772 - MER21B LTR ERV1 -111 752 526 4079 129 16 10 chr4 38202892 38203514 -146085148 + MER41B LTR ERV1 1 626 -9 1354 229 45 64 chr4 38203470 38204072 -146084590 - MER21B LTR ERV1 -295 568 13 * 2043 134 0 6 chr4 38204818 38205132 -146083530 - AluJo SINE Alu 0 312 1 189 213 0 49 chr4 38205584 38205645 -146083017 + L2 LINE L2 2915 2972 -300 234 250 24 71 chr4 38207045 38207129 -146081533 + MIR SINE MIR 110 189 -73 589 169 61 40 chr4 38207467 38207615 -146081047 + MER5A DNA MER1_type 39 189 0 369 290 87 22 chr4 38207844 38207982 -146080680 + L2 LINE L2 3167 3313 0 342 277 62 18 chr4 38208483 38208595 -146080067 - L2 LINE L2 -1 3271 3155 335 270 50 20 chr4 38208637 38208737 -146079925 + MIR3 SINE MIR 97 199 -9 274 265 39 49 chr4 38208948 38209050 -146079612 + MIR3 SINE MIR 101 201 -7 2667 114 28 37 chr4 38209291 38209329 -146079333 - MSTA LTR MaLR -3 425 388 1973 110 0 23 chr4 38209329 38209628 -146079034 + AluSx SINE Alu 1 292 -20 2667 114 28 37 chr4 38209628 38210018 -146078644 - MSTA LTR MaLR -40 388 1 316 212 144 61 chr4 38210329 38210461 -146078201 - MIR SINE MIR 0 262 120 741 254 125 39 chr4 38211121 38211313 -146077349 - MER46C DNA MER2_type 0 338 107 2134 98 10 0 chr4 38211313 38211609 -146077053 + AluSx SINE Alu 1 299 -13 741 254 125 39 chr4 38211609 38211727 -146076935 - MER46C DNA MER2_type -231 107 1 429 153 0 0 chr4 38212040 38212112 -146076550 - AluS SINE Alu -240 73 2 2054 102 10 16 chr4 38212165 38212468 -146076194 + AluSc SINE Alu 1 301 -8 14049 153 28 78 chr4 38212592 38214905 -146073757 + L1M1 LINE L1 3 2156 -5409 9935 64 44 5 chr4 38214905 38216235 -146072427 + SVA Other Other 1 1381 -5 14049 153 28 78 chr4 38216235 38216691 -146071971 + L1M1 LINE L1 2156 2633 -4932 1354 99 5 0 chr4 38216812 38217003 -146071659 + AluSp SINE Alu 120 311 -2 252 0 0 0 chr4 38217003 38217031 -146071631 + (TA)n Simple_repeat Simple_repeat 2 29 0 459 273 8 23 chr4 38217343 38217475 -146071187 + MER5A DNA MER1_type 54 183 -6 488 159 9 37 chr4 38217503 38217610 -146071052 - MIR SINE MIR -112 150 47 214 235 0 0 chr4 38218254 38218305 -146070357 - L2 LINE L2 0 3313 3263 779 242 81 122 chr4 38220008 38220541 -146068121 + MLT1J LTR MaLR 1 511 0 547 243 218 5 chr4 38220905 38221111 -146067551 - MIR SINE MIR -6 256 7 809 158 8 15 chr4 38221372 38221505 -146067157 - FLAM_C SINE Alu 0 133 2 2333 73 0 7 chr4 38221512 38221814 -146066848 - AluSg SINE Alu -10 300 1 1998 112 7 0 chr4 38223819 38224104 -146064558 + AluSx SINE Alu 11 297 -15 304 275 151 63 chr4 38224119 38224403 -146064259 + L1MB5 LINE L1 5634 5942 -232 * 402 262 205 15 chr4 38224172 38224435 -146064227 + L1ME4a LINE L1 5688 6000 -121 195 292 77 0 chr4 38225134 38225199 -146063463 - MIR SINE MIR -88 174 105 2156 114 0 0 chr4 38225746 38226054 -146062608 - AluSx SINE Alu -4 308 1 1459 194 72 118 chr4 38226340 38226802 -146061860 + MLT1D LTR MaLR 1 439 -66 2086 109 0 0 chr4 38226802 38227113 -146061549 - AluSx SINE Alu 0 311 1 1459 194 72 118 chr4 38227113 38227176 -146061486 + MLT1D LTR MaLR 439 503 -2 343 239 0 0 chr4 38227329 38227396 -146061266 + L2 LINE L2 3204 3270 -2 303 305 38 0 chr4 38227545 38227650 -146061012 + MIR SINE MIR 111 219 -43 433 193 24 12 chr4 38228132 38228298 -146060364 + CT-rich Low_complexity Low_complexity 5 172 0 256 267 27 0 chr4 38228594 38228669 -146059993 + GA-rich Low_complexity Low_complexity 6 82 0 2045 44 0 4 chr4 38229773 38230025 -146058637 + AluY SINE Alu 60 310 -1 3097 192 112 39 chr4 38230247 38231090 -146057572 + L1MC4 LINE L1 6915 7818 -224 * 19012 140 28 17 chr4 38231087 38234376 -146054286 + L1MA3 LINE L1 10 3262 -4462 2117 105 27 10 chr4 38234376 38234671 -146053991 - AluSx SINE Alu -12 300 1 19012 140 28 17 chr4 38234671 38238988 -146049674 + L1MA3 LINE L1 3262 7724 0 23 33 0 0 chr4 38238988 38239018 -146049644 + AT_rich Low_complexity Low_complexity 1 30 0 421 276 129 43 chr4 38239163 38239245 -146049417 + L1ME LINE L1 5382 5456 -665 2333 108 0 0 chr4 38239245 38239542 -146049120 - AluSg SINE Alu -11 299 3 421 276 129 43 chr4 38239542 38239738 -146048924 + L1ME LINE L1 5456 5684 -437 301 299 186 5 chr4 38239993 38240187 -146048475 + MIR SINE MIR 2 230 -32 265 239 91 0 chr4 38240375 38240463 -146048199 + L1MC4 LINE L1 7933 8028 -14 1065 185 12 33 chr4 38240493 38240534 -146048128 + L1MC4 LINE L1 7804 7844 -198 1687 164 74 3 chr4 38240534 38240870 -146047792 + MER46B DNA MER2_type 2 236 0 1065 185 12 33 chr4 38240870 38241071 -146047591 + L1MC4 LINE L1 7844 8041 -1 2848 13 0 13 chr4 38241087 38241402 -146047260 + AluYa5 SINE Alu 1 311 0 2248 108 3 25 chr4 38241521 38241653 -146047009 + AluSx SINE Alu 1 134 -178 2256 65 0 0 chr4 38241653 38241915 -146046747 + AluY SINE Alu 38 299 -12 2248 108 3 25 chr4 38241915 38242097 -146046565 + AluSx SINE Alu 134 308 -4 2441 44 0 60 chr4 38243155 38243473 -146045189 + AluY SINE Alu 1 299 -12 2521 84 0 3 chr4 38243954 38244263 -146044399 + AluSq SINE Alu 1 308 -5 546 246 91 82 chr4 38244769 38245001 -146043661 - MER106B DNA MER1_type -2 1057 1 1456 209 75 3 chr4 38245359 38245680 -146042982 + MER2 DNA MER2_type 1 344 -1 264 271 0 0 chr4 38246085 38246144 -146042518 + (CA)n Simple_repeat Simple_repeat 2 60 0 549 311 38 4 chr4 38246668 38246903 -146041759 - MIR SINE MIR -4 258 16 1453 192 177 85 chr4 38247394 38248111 -146040551 + MER21B LTR ERV1 21 871 -60 326 236 36 64 chr4 38249173 38249281 -146039381 + MIR SINE MIR 64 170 -92 2175 92 18 11 chr4 38249281 38249614 -146039048 - AluSx SINE Alu 0 335 1 326 236 36 64 chr4 38249614 38249644 -146039018 + MIR SINE MIR 170 199 -63 400 275 17 0 chr4 38249739 38249859 -146038803 + MIR SINE MIR 5 126 -136 390 258 177 29 chr4 38250458 38250667 -146037995 + MIR SINE MIR 1 240 -22 918 203 84 4 chr4 38251242 38251469 -146037193 + L1MB3 LINE L1 5932 6176 -7 1903 158 17 0 chr4 38251581 38251879 -146036783 - AluJo SINE Alu -9 303 1 327 244 42 50 chr4 38251879 38251998 -146036664 - MIR SINE MIR -97 165 48 205 188 0 47 chr4 38253805 38253869 -146034793 + (TTAAA)n Simple_repeat Simple_repeat 3 63 0 642 229 63 58 chr4 38254751 38254956 -146033706 + MIR SINE MIR 1 206 -56 378 211 90 75 chr4 38254970 38255103 -146033559 - L2 LINE L2 -12 3301 3167 313 278 26 43 chr4 38255200 38255315 -146033347 - L2 LINE L2 -1 3271 3159 1620 137 7 50 chr4 38255653 38255931 -146032731 + AluSx SINE Alu 36 301 -11 555 157 0 0 chr4 38256029 38256112 -146032550 + AluS SINE Alu 2 84 -228 1043 137 43 0 chr4 38256409 38256570 -146032092 + LTR28 LTR ERV1 1 168 -852 1042 188 80 80 chr4 38256567 38256928 -146031734 + LTR27 LTR ERV1 276 636 0 * 257 219 49 12 chr4 38257771 38257853 -146030809 + MIR SINE MIR 69 153 -109 1771 116 51 18 chr4 38257892 38258167 -146030495 + MER4C LTR ERV1 8 291 -174 936 166 0 6 chr4 38258312 38258469 -146030193 + MER4C LTR ERV1 310 465 0 732 229 60 37 chr4 38258482 38258700 -146029962 + MLT1G1 LTR MaLR 75 297 -298 666 199 41 34 chr4 38258759 38258905 -146029757 + MLT1G1 LTR MaLR 447 593 -2 243 258 30 15 chr4 38258906 38258972 -146029690 + MIR SINE MIR 158 224 -38 1227 163 0 28 chr4 38259015 38259230 -146029432 - MER3 DNA MER1_type 0 209 1 296 225 188 59 chr4 38259504 38259860 -146028802 + L1ME4a LINE L1 5707 6108 -13 25 0 0 0 chr4 38260095 38260120 -146028542 + AT_rich Low_complexity Low_complexity 1 25 0 1864 149 203 20 chr4 38260134 38260529 -146028133 + MLT1C LTR MaLR 1 467 0 3249 157 48 21 chr4 38260756 38261361 -146027301 + L1MB1 LINE L1 5543 6163 -5 1514 205 16 93 chr4 38261397 38261826 -146026836 + MSTD LTR MaLR 1 396 0 203 161 48 32 chr4 38262021 38262083 -146026579 + A-rich Low_complexity Low_complexity 1 63 0 7409 87 51 2 chr4 38262635 38263794 -146024868 - L1P2 LINE L1 -722 5432 4233 244 304 0 22 chr4 38267669 38267761 -146020901 + L2 LINE L2 3183 3272 0 292 330 65 10 chr4 38267992 38268222 -146020440 - MIR3 SINE MIR -14 248 5 883 89 0 0 chr4 38271508 38271620 -146017042 + LTR8 LTR ERV1 580 691 0 1382 143 44 177 chr4 38271620 38272026 -146016636 + MSTB LTR MaLR 75 426 0 796 192 5 96 chr4 38272198 38272329 -146016333 - MER5A DNA MER1_type 0 189 82 1786 169 36 0 chr4 38272329 38272630 -146016032 - AluSx SINE Alu 0 312 1 796 192 5 96 chr4 38272630 38272706 -146015956 - MER5A DNA MER1_type -107 82 1 371 204 56 19 chr4 38272782 38272890 -146015772 - MER34 LTR ERV1 -3 539 428 2052 116 0 27 chr4 38273414 38273707 -146014955 - AluSg1 SINE Alu -20 289 5 4015 80 25 4 chr4 38273818 38274343 -146014319 + LTR17 LTR ERV1 1 536 -244 1327 148 17 25 chr4 38274445 38274681 -146013981 + L1PA16 LINE L1 5933 6166 0 1761 152 0 62 chr4 38274708 38275030 -146013632 - AluJo SINE Alu -10 302 1 299 311 25 19 chr4 38275033 38275194 -146013468 + LTR23 LTR ERV1 276 437 0 338 289 67 0 chr4 38275221 38275325 -146013337 - MER34B LTR ERV1 -3 562 452 1856 134 10 3 chr4 38275326 38275616 -146013046 + MER50 LTR ERV1 2 293 -441 2162 101 0 17 chr4 38276008 38276304 -146012358 + AluSx SINE Alu 14 304 -8 184 250 0 36 chr4 38276780 38276836 -146011826 - MIR SINE MIR -97 165 112 2442 101 0 0 chr4 38276869 38277177 -146011485 - AluSg SINE Alu -2 308 1 253 348 32 37 chr4 38277315 38277502 -146011160 + MIR SINE MIR 6 191 -71 254 116 93 0 chr4 38278673 38278716 -146009946 + MLT2F LTR ERVL 617 663 0 252 231 104 127 chr4 38278717 38278825 -146009837 + MIR SINE MIR 78 187 -75 2130 128 0 3 chr4 38278825 38279137 -146009525 + AluSx SINE Alu 1 311 -1 252 231 104 127 chr4 38279137 38279150 -146009512 + MIR SINE MIR 187 199 -63 2634 39 16 0 chr4 38279150 38279455 -146009207 + AluY SINE Alu 1 310 -1 252 231 104 127 chr4 38279455 38279505 -146009157 + MIR SINE MIR 199 246 -16 2181 134 0 0 chr4 38280021 38280327 -146008335 + AluSx SINE Alu 1 306 -6 255 181 14 42 chr4 38281756 38281828 -146006834 + (CCCCG)n Simple_repeat Simple_repeat 1 70 0 885 238 60 0 chr4 38283440 38283608 -146005054 - MER45A DNA AcHobo 0 178 1 2564 61 0 3 chr4 38283745 38284056 -146004606 + AluY SINE Alu 1 310 -1 211 248 277 10 chr4 38284133 38284234 -146004428 - MIR3 SINE MIR -37 171 44 193 244 12 12 chr4 38284337 38284419 -146004243 + GA-rich Low_complexity Low_complexity 3 84 0 206 341 123 35 chr4 38284748 38284918 -146003744 - MIR SINE MIR -62 200 16 2604 50 0 0 chr4 38285643 38285944 -146002718 + AluY SINE Alu 1 301 -10 261 294 178 27 chr4 38285950 38286096 -146002566 + MIR3 SINE MIR 28 195 -13 1175 168 57 10 chr4 38286144 38286353 -146002309 - MER20 DNA MER1_type 0 219 1 206 347 11 32 chr4 38286355 38286450 -146002212 - L2 LINE L2 -177 3095 3003 830 148 23 0 chr4 38286756 38286884 -146001778 + FLAM_C SINE Alu 2 132 -1 1941 124 0 4 chr4 38287672 38287945 -146000717 + AluJb SINE Alu 40 311 -1 1996 203 20 18 chr4 38288303 38288698 -145999964 + MSTD LTR MaLR 1 396 0 234 191 21 0 chr4 38288754 38288801 -145999861 + MER91A DNA MER1_type 2 49 -147 922 134 45 40 chr4 38290164 38290299 -145998363 - Charlie5 DNA MER1_type -11 2574 2436 2537 127 3 25 chr4 38290299 38290662 -145998000 - THE1A LTR MaLR 0 355 1 922 134 45 40 chr4 38290662 38290727 -145997935 - Charlie5 DNA MER1_type -149 2436 2373 416 67 17 0 chr4 38291264 38291324 -145997338 + (TC)n Simple_repeat Simple_repeat 2 62 0 799 200 13 7 chr4 38291475 38291625 -145997037 + Charlie4 DNA MER1_type 17 167 -1794 970 172 0 70 chr4 38291641 38291827 -145996835 - AluJo SINE Alu -139 173 1 625 144 9 9 chr4 38291832 38291943 -145996719 + Charlie4 DNA MER1_type 1823 1933 -28 387 60 0 0 chr4 38291947 38291997 -145996665 + (CA)n Simple_repeat Simple_repeat 1 50 0 207 0 0 0 chr4 38292316 38292339 -145996323 + (TC)n Simple_repeat Simple_repeat 1 23 0 897 285 62 27 chr4 38292365 38292786 -145995876 + LTR16A LTR ERVL 1 444 -6 1807 153 31 11 chr4 38292977 38293264 -145995398 - AluSx SINE Alu -19 293 1 2130 94 7 7 chr4 38293508 38293796 -145994866 + AluSg SINE Alu 1 288 -22 1130 202 158 97 chr4 38294022 38294299 -145994363 + MLT1D LTR MaLR 2 321 -184 2478 67 0 6 chr4 38294299 38294612 -145994050 + AluY SINE Alu 1 311 0 1130 202 158 97 chr4 38294612 38294809 -145993853 + MLT1D LTR MaLR 321 505 0 215 360 0 13 chr4 38295240 38295315 -145993347 + L2 LINE L2 3185 3258 -14 222 118 0 0 chr4 38295318 38295352 -145993310 + (T)n Simple_repeat Simple_repeat 1 34 0 696 132 47 0 chr4 38295354 38295460 -145993202 - HY1 scRNA scRNA -1 111 1 2302 97 3 7 chr4 38297045 38297354 -145991308 - AluSq SINE Alu -5 308 1 401 218 11 0 chr4 38297618 38297705 -145990957 - L1ME4a LINE L1 -235 5886 5799 1074 178 29 29 chr4 38297933 38298141 -145990521 + MER3 DNA MER1_type 1 208 -1 1815 148 11 4 chr4 38298166 38298444 -145990218 + AluJb SINE Alu 1 280 -32 30 0 0 0 chr4 38298569 38298599 -145990063 + AT_rich Low_complexity Low_complexity 1 30 0 270 277 128 11 chr4 38299347 38299441 -145989221 + L2 LINE L2 3168 3272 0 245 282 56 61 chr4 38299505 38299617 -145989045 - MIR SINE MIR -62 146 56 2196 131 0 13 chr4 38299617 38299930 -145988732 - AluSx SINE Alu -3 309 1 245 282 56 61 chr4 38299930 38299968 -145988694 - MIR SINE MIR -152 56 19 1070 190 24 6 chr4 38300047 38300365 -145988297 - MLT1C-int LTR MaLR -924 447 2 2148 127 10 3 chr4 38300368 38300676 -145987986 - AluSq SINE Alu -3 310 1 2080 204 76 7 chr4 38300684 38301120 -145987542 - MLT1C LTR MaLR -1 466 1 465 269 19 19 chr4 38301163 38301319 -145987343 - L1ME3A LINE L1 -78 6092 5937 * 3011 136 54 17 chr4 38301298 38301820 -145986842 - L1MB7 LINE L1 -5 6179 5639 821 144 0 0 chr4 38302483 38302601 -145986061 - FLAM_C SINE Alu -25 118 1 611 246 79 12 chr4 38302716 38302956 -145985706 - L1ME3A LINE L1 -219 5951 5696 841 131 86 157 chr4 38302958 38303322 -145985340 + LTR32 LTR ERVL 15 466 -5 354 183 0 0 chr4 38303333 38303404 -145985258 + (CATATA)n Simple_repeat Simple_repeat 4 74 0 301 266 0 43 chr4 38303407 38303501 -145985161 - L1MC4 LINE L1 -1339 6703 6614 500 211 11 38 chr4 38303506 38303691 -145984971 + (CATATA)n Simple_repeat Simple_repeat 1 180 0 230 262 95 24 chr4 38303696 38303780 -145984882 - L1MC4 LINE L1 -1339 6703 6614 236 198 0 116 chr4 38303800 38303886 -145984776 + L1MC3 LINE L1 6571 6646 -1139 240 233 0 0 chr4 38303886 38303959 -145984703 + (CATATA)n Simple_repeat Simple_repeat 6 78 0 400 244 23 0 chr4 38303971 38304143 -145984519 + (CATATA)n Simple_repeat Simple_repeat 5 180 0 2059 96 4 4 chr4 38304157 38304448 -145984214 - AluY SINE Alu 0 302 12 591 258 74 26 chr4 38304493 38304683 -145983979 - L1ME3A LINE L1 -523 5639 5441 703 266 140 29 chr4 38304683 38304991 -145983671 - MLT1H LTR MaLR 0 549 208 1460 241 87 66 chr4 38305137 38305247 -145983415 - L1ME3A LINE L1 -735 5435 5329 2057 120 3 7 chr4 38305247 38305581 -145983081 - AluSx SINE Alu 0 333 1 1460 241 87 66 chr4 38305581 38306569 -145982093 - L1ME3A LINE L1 -841 5329 4299 2102 119 0 33 chr4 38306569 38306872 -145981790 + AluSx SINE Alu 3 295 -17 1460 241 87 66 chr4 38306872 38307132 -145981530 - L1ME3A LINE L1 -1871 4299 4046 523 274 15 50 chr4 38307563 38307636 -145981026 - MIR SINE MIR -46 216 142 595 197 32 75 chr4 38307636 38307824 -145980838 + MER104 DNA MER2_type 1 180 0 523 274 15 50 chr4 38307824 38307951 -145980711 - MIR SINE MIR -120 142 23 4372 136 69 80 chr4 38308033 38308567 -145980095 - MER4D LTR ERV1 0 903 382 2496 60 0 3 chr4 38308567 38308869 -145979793 + AluY SINE Alu 1 301 -10 4372 136 69 80 chr4 38308869 38309243 -145979419 - MER4D LTR ERV1 -521 382 5 181 306 81 36 chr4 38309408 38309519 -145979143 - L2 LINE L2 -4 3268 3153 786 259 82 0 chr4 38309846 38310066 -145978596 - LTR16C LTR ERVL -66 425 188 539 246 35 14 chr4 38310995 38311137 -145977525 + MIR SINE MIR 107 251 -11 218 184 0 0 chr4 38311733 38311771 -145976891 - MIR SINE MIR -65 197 160 189 107 0 0 chr4 38311928 38311956 -145976706 + (CAA)n Simple_repeat Simple_repeat 2 29 0 377 200 35 70 chr4 38312275 38312390 -145976272 + MIR SINE MIR 87 197 -65 373 270 0 0 chr4 38312390 38312490 -145976172 + L1ME3 LINE L1 5066 5165 -981 1424 245 107 88 chr4 38312531 38312629 -145976033 + MLT1G1 LTR MaLR 3 98 -497 2512 68 0 0 chr4 38312629 38312938 -145975724 + AluY SINE Alu 1 309 -2 1424 245 107 88 chr4 38312938 38313419 -145975243 + MLT1G1 LTR MaLR 98 593 -2 311 246 63 28 chr4 38313420 38313562 -145975100 + MLT1G1-int LTR MaLR 4 150 -1221 588 295 25 73 chr4 38313570 38313885 -145974777 + MLT1G1-int LTR MaLR 307 606 -765 189 0 0 0 chr4 38314218 38314239 -145974423 + (T)n Simple_repeat Simple_repeat 1 21 0 372 306 111 64 chr4 38314449 38314838 -145973824 + MLT1G1-int LTR MaLR 961 1367 -4 1059 245 97 92 chr4 38314842 38315261 -145973401 + MLT1G1 LTR MaLR 1 425 -170 2288 73 0 61 chr4 38315261 38315589 -145973073 + AluY SINE Alu 1 308 -3 1059 245 97 92 chr4 38315589 38315757 -145972905 + MLT1G1 LTR MaLR 425 591 -4 1020 244 67 42 chr4 38315773 38315814 -145972848 + L1ME3 LINE L1 5280 5318 -844 3709 122 61 0 chr4 38315814 38316355 -145972307 + L1PA15 LINE L1 5592 6165 0 1020 244 67 42 chr4 38316355 38316670 -145971992 + L1ME3 LINE L1 5318 5645 -517 1169 152 0 0 chr4 38316701 38316872 -145971790 + AluJb SINE Alu 128 298 -14 593 191 27 66 chr4 38316879 38317062 -145971600 + L1ME3 LINE L1 5984 6159 -3 2340 99 0 0 chr4 38317069 38317361 -145971301 + AluSg1 SINE Alu 1 292 -17 334 232 0 0 chr4 38317365 38317434 -145971228 + MIR SINE MIR 193 261 -1 670 302 133 27 chr4 38318368 38319031 -145969631 + L2 LINE L2 2531 3272 0 1160 152 0 0 chr4 38319457 38319628 -145969034 + AluJb SINE Alu 142 312 0 1216 135 0 0 chr4 38319970 38320140 -145968522 + AluSq SINE Alu 130 299 -14 2167 110 0 0 chr4 38320867 38321172 -145967490 + AluSx SINE Alu 1 305 0 234 91 0 0 chr4 38322939 38322972 -145965690 + (CA)n Simple_repeat Simple_repeat 1 33 0 2154 127 0 0 chr4 38323459 38323767 -145964895 + AluSx SINE Alu 1 308 0 2070 136 7 0 chr4 38324367 38324675 -145963987 - AluSx SINE Alu -2 310 1 412 234 18 9 chr4 38324675 38324786 -145963876 - MIR SINE MIR -81 181 70 1059 194 55 5 chr4 38324786 38324987 -145963675 - MLT1D LTR MaLR -294 211 1 418 320 16 31 chr4 38325309 38325437 -145963225 + MER91A DNA MER1_type 44 169 -27 1651 193 7 10 chr4 38325928 38326233 -145962429 + AluJo SINE Alu 1 304 -8 425 337 39 10 chr4 38326374 38326579 -145962083 + MIR SINE MIR 34 244 -18 292 330 0 19 chr4 38326747 38326853 -145961809 - MIR SINE MIR -112 150 47 2131 207 51 24 chr4 38327193 38327685 -145960977 + MLT1D LTR MaLR 1 505 0 214 277 142 5 chr4 38327811 38327953 -145960709 - MIR SINE MIR -19 243 18 342 329 13 44 chr4 38327973 38328131 -145960531 - MIR SINE MIR -58 204 52 1500 158 0 60 chr4 38328853 38329138 -145959524 - AluJb SINE Alu -13 299 32 283 283 54 33 chr4 38329273 38329365 -145959297 + L2 LINE L2 3143 3236 -36 1137 120 0 0 chr4 38329564 38329722 -145958940 + AluSq SINE Alu 132 289 -24 261 267 44 0 chr4 38329877 38329967 -145958695 - MIR3 SINE MIR -23 185 92 217 200 147 80 chr4 38330257 38330332 -145958330 + MIR SINE MIR 20 99 -109 388 237 30 30 chr4 38330437 38330568 -145958094 + LTR16B LTR ERVL 332 462 -2 438 246 57 33 chr4 38330656 38330778 -145957884 - L2 LINE L2 0 3272 3148 1974 196 106 23 chr4 38331134 38331614 -145957048 + MER74A LTR ERVL 1 520 -38 2739 121 36 12 chr4 38331932 38332344 -145956318 - MSTB LTR MaLR -4 422 1 21 0 0 0 chr4 38333348 38333369 -145955293 + AT_rich Low_complexity Low_complexity 1 21 0 558 242 160 52 chr4 38333747 38333978 -145954684 - MLT1J2 LTR MaLR -18 432 177 2335 169 93 0 chr4 38334156 38334564 -145954098 + MLT2B1 LTR ERVL 1 446 -74 688 138 83 28 chr4 38334588 38334733 -145953929 + MLT1E1 LTR MaLR 198 350 -304 1727 171 68 0 chr4 38334929 38335245 -145953417 - AluSx SINE Alu 0 339 5 272 258 155 32 chr4 38335414 38335569 -145953093 + L2 LINE L2 2684 2857 -457 21 0 0 0 chr4 38335829 38335850 -145952812 + AT_rich Low_complexity Low_complexity 1 21 0 315 0 0 0 chr4 38335926 38335961 -145952701 + (CA)n Simple_repeat Simple_repeat 2 36 0 685 277 130 9 chr4 38336053 38336284 -145952378 + MIR SINE MIR 2 260 -2 273 98 0 0 chr4 38336348 38336389 -145952273 + (TG)n Simple_repeat Simple_repeat 1 41 0 294 319 17 26 chr4 38336396 38336512 -145952150 + L2 LINE L2 3183 3297 -16 2412 157 38 26 chr4 38336805 38337226 -145951436 + MSTB LTR MaLR 1 426 0 2151 141 0 0 chr4 38337344 38337650 -145951012 + AluSx SINE Alu 1 306 -6 2889 104 3 3 chr4 38338104 38338479 -145950183 - THE1C LTR MaLR 0 375 1 2581 53 0 0 chr4 38339458 38339759 -145948903 - AluY SINE Alu -10 301 1 2276 144 30 41 chr4 38340169 38340242 -145948420 - THE1B LTR MaLR 0 364 292 2256 114 3 0 chr4 38340242 38340539 -145948123 + AluSp SINE Alu 1 298 -15 2276 144 30 41 chr4 38340539 38340833 -145947829 - THE1B LTR MaLR -72 292 1 238 275 28 64 chr4 38341120 38341229 -145947433 + HsTC2 DNA Tc2 22 126 -1772 669 270 133 0 chr4 38341313 38341524 -145947138 + MIR SINE MIR 9 247 -15 576 243 46 95 chr4 38341522 38341785 -145946877 - MIR SINE MIR 0 262 13 * 2248 104 0 0 chr4 38341838 38342127 -145946535 - AluSq SINE Alu -24 289 1 186 343 130 0 chr4 38343194 38343302 -145945360 + L2 LINE L2 3190 3311 -2 8419 165 67 38 chr4 38343494 38344121 -145944541 + L1MC3 LINE L1 5938 6545 -1240 1313 212 89 43 chr4 38344121 38344470 -145944192 - MLT1A1 LTR MaLR 0 365 1 8419 165 67 38 chr4 38344470 38345402 -145943260 + L1MC3 LINE L1 6545 7448 -337 2072 126 3 3 chr4 38345402 38345696 -145942966 + AluSx SINE Alu 1 294 -18 8419 165 67 38 chr4 38345696 38345738 -145942924 + L1MC3 LINE L1 7448 7487 -298 258 32 0 0 chr4 38345738 38345769 -145942893 + (CA)n Simple_repeat Simple_repeat 2 32 0 8419 165 67 38 chr4 38345769 38345954 -145942708 + L1MC3 LINE L1 7487 7779 -6 886 128 0 40 chr4 38347011 38347160 -145941502 - FLAM_C SINE Alu 0 143 1 492 18 0 0 chr4 38347285 38347342 -145941320 + (TTTC)n Simple_repeat Simple_repeat 3 59 0 2068 108 0 0 chr4 38347342 38347621 -145941041 - AluY SINE Alu -32 279 1 1768 194 22 22 chr4 38347947 38348312 -145940350 + MLT1A1 LTR MaLR 1 365 0 253 205 0 0 chr4 38348349 38348388 -145940274 + AluJ/monomer SINE Alu 1 39 -262 1822 178 23 34 chr4 38349072 38349421 -145939241 + MLT1A1 LTR MaLR 1 345 -20 574 226 16 130 chr4 38349786 38350109 -145938553 - MER5C DNA MER1_type 0 324 39 2078 244 21 28 chr4 38350124 38350693 -145937969 + L1ME3A LINE L1 5403 5967 -203 1707 183 0 4 chr4 38350776 38351055 -145937607 + AluJb SINE Alu 1 278 -34 435 149 0 0 chr4 38351061 38351135 -145937527 + (TA)n Simple_repeat Simple_repeat 2 75 0 368 197 152 45 chr4 38351291 38351469 -145937193 - MER5C DNA MER1_type 0 324 128 375 23 0 0 chr4 38351715 38351759 -145936903 + (TG)n Simple_repeat Simple_repeat 2 45 0 2144 119 0 0 chr4 38351761 38352039 -145936623 - AluSc SINE Alu -31 278 1 2047 113 28 3 chr4 38352044 38352327 -145936335 - AluSx SINE Alu -22 290 1 1602 188 0 20 chr4 38352689 38352987 -145935675 + AluJo SINE Alu 11 302 -10 312 240 115 0 chr4 38353733 38353829 -145934833 - MER5C DNA MER1_type -213 111 5 790 169 0 16 chr4 38354311 38354435 -145934227 - FLAM_A SINE Alu -7 126 5 595 309 136 18 chr4 38354435 38354817 -145933845 + L2 LINE L2 2886 3312 -1 416 254 109 70 chr4 38355422 38355623 -145933039 + MIR SINE MIR 40 248 -14 1903 161 16 10 chr4 38355679 38355989 -145932673 - AluJb SINE Alu 0 312 1 1563 259 178 29 chr4 38356101 38356747 -145931915 - L2 LINE L2 -5 3308 2760 1430 208 16 22 chr4 38356747 38357034 -145931628 + AluJo SINE Alu 2 288 -24 243 0 0 0 chr4 38357034 38357061 -145931601 + (TTTAA)n Simple_repeat Simple_repeat 1 27 0 1430 208 16 22 chr4 38357061 38357086 -145931576 + AluJo SINE Alu 288 312 0 1563 259 178 29 chr4 38357086 38357606 -145931056 - L2 LINE L2 -553 2760 1156 1693 137 0 8 chr4 38357625 38357873 -145930789 + AluSq SINE Alu 1 246 -67 2587 129 74 12 chr4 38358576 38358979 -145929683 - MSTA LTR MaLR 0 428 1 1203 285 39 30 chr4 38359098 38359558 -145929104 + MLT1J LTR MaLR 13 476 -35 225 0 0 0 chr4 38359785 38359810 -145928852 + (TTAA)n Simple_repeat Simple_repeat 3 27 0 462 275 39 39 chr4 38359842 38360024 -145928638 + MER5A DNA MER1_type 7 188 -1 2122 130 3 0 chr4 38360081 38360380 -145928282 + AluSq SINE Alu 1 300 -13 2434 116 124 18 chr4 38360819 38361206 -145927456 - MSTA LTR MaLR 0 428 1 183 318 59 12 chr4 38361333 38361418 -145927244 - L2 LINE L2 -4 3309 3221 1520 177 19 105 chr4 38362184 38362333 -145926329 + MER58B DNA MER1_type 2 162 -2258 1568 213 0 10 chr4 38362333 38362624 -145926038 + AluJb SINE Alu 1 288 -24 1520 177 19 105 chr4 38362624 38362846 -145925816 + MER58B DNA MER1_type 162 341 0 241 347 0 0 chr4 38363014 38363086 -145925576 + L2 LINE L2 3136 3207 -65 228 189 0 38 chr4 38363107 38363160 -145925502 + L1MC4 LINE L1 6653 6703 -1339 * 255 175 5 26 chr4 38363129 38363206 -145925456 - L1MCa LINE L1 -1339 6983 1995 225 178 0 0 chr4 38363261 38363306 -145925356 + LTR66 LTR ERVL 395 439 -171 404 250 0 8 chr4 38363308 38363432 -145925230 + (CATA)n Simple_repeat Simple_repeat 4 126 0 1846 162 23 96 chr4 38363517 38363911 -145924751 + MLT1A1 LTR MaLR 1 365 0 238 277 219 23 chr4 38363948 38364204 -145924458 - L1MC4a LINE L1 -1662 6146 5841 341 244 17 26 chr4 38364776 38364891 -145923771 - L1MC4a LINE L1 -1973 5835 5722 21 0 0 0 chr4 38364902 38364923 -145923739 + AT_rich Low_complexity Low_complexity 1 21 0 269 348 22 7 chr4 38365117 38365255 -145923407 + L2 LINE L2 2910 3049 -223 4084 149 5 20 chr4 38365546 38365643 -145923019 + MER41B LTR ERV1 1 98 -537 1987 142 7 0 chr4 38365643 38365939 -145922723 - AluSx SINE Alu -14 298 1 4084 149 5 20 chr4 38365939 38366486 -145922176 + MER41B LTR ERV1 98 635 0 415 286 55 39 chr4 38366537 38366719 -145921943 + MIR SINE MIR 20 204 -58 21 36 0 0 chr4 38367019 38367047 -145921615 + AT_rich Low_complexity Low_complexity 1 28 0 753 268 131 63 chr4 38367644 38368216 -145920446 + MLT1L LTR MaLR 5 615 0 2123 134 0 3 chr4 38368358 38368663 -145919999 + AluSx SINE Alu 2 305 -7 2125 197 59 32 chr4 38369132 38369211 -145919451 + MLT1D LTR MaLR 1 76 -429 2280 159 19 11 chr4 38369211 38369583 -145919079 + THE1C LTR MaLR 1 375 0 2125 197 59 32 chr4 38369583 38369995 -145918667 + MLT1D LTR MaLR 76 505 0 249 299 216 0 chr4 38370006 38370140 -145918522 - MIR SINE MIR -38 224 62 662 254 17 6 chr4 38370201 38370374 -145918288 - MER5B DNA MER1_type 0 178 4 485 271 60 6 chr4 38370459 38370625 -145918037 - MER5B DNA MER1_type -2 176 2 309 311 60 70 chr4 38371397 38371696 -145916966 - MARNA DNA Mariner -148 438 143 1955 159 0 0 chr4 38371778 38372067 -145916595 + AluJb SINE Alu 1 289 -23 30 0 0 0 chr4 38372067 38372097 -145916565 + AT_rich Low_complexity Low_complexity 1 30 0 612 223 58 0 chr4 38372129 38372268 -145916394 + MIR SINE MIR 106 252 -10 737 298 62 48 chr4 38372328 38372825 -145915837 - MLT1K LTR MaLR -16 572 69 185 289 0 0 chr4 38372940 38372985 -145915677 - L2 LINE L2 -19 3294 3250 712 312 56 4 chr4 38373003 38373234 -145915428 - MIR SINE MIR 0 262 20 385 295 16 8 chr4 38373228 38373350 -145915312 - MIR SINE MIR -54 208 86 * 337 299 28 76 chr4 38373405 38373549 -145915113 + MER91A DNA MER1_type 1 137 -59 1950 116 49 0 chr4 38374033 38374317 -145914345 - AluSx SINE Alu -14 298 1 359 279 62 81 chr4 38374365 38374517 -145914145 + MLT1L LTR MaLR 11 159 -456 407 224 12 0 chr4 38374517 38374602 -145914060 - LTR16C LTR ERVL 0 491 406 413 185 107 24 chr4 38375185 38375299 -145913363 + MLT1J LTR MaLR 59 159 -291 2069 129 0 49 chr4 38375931 38376257 -145912405 - AluJb SINE Alu -2 310 1 249 254 87 32 chr4 38376549 38376675 -145911987 + MLT1J LTR MaLR 379 511 0 2915 16 0 0 chr4 38377099 38377416 -145911246 + AluYb8 SINE Alu 1 317 -1 272 223 116 36 chr4 38377744 38377856 -145910806 - L1ME4a LINE L1 -204 5917 5797 2428 59 41 31 chr4 38378087 38378407 -145910255 - L1PA12 LINE L1 0 6168 5846 1386 212 98 127 chr4 38378624 38379595 -145909067 + LTR1B LTR ERV1 1 1020 0 566 304 111 18 chr4 38380181 38380461 -145908201 + MLT1L LTR MaLR 308 613 -2 2398 124 48 22 chr4 38380543 38380898 -145907764 + THE1B LTR MaLR 1 364 0 12232 89 10 10 chr4 38380898 38382478 -145906184 + THE1B-int LTR MaLR 1 1580 0 1974 151 49 26 chr4 38382490 38382840 -145905822 + THE1B LTR MaLR 7 364 0 4002 139 12 71 chr4 38383313 38384047 -145904615 - LTR8 LTR ERV1 0 691 1 1797 160 225 13 chr4 38384185 38384567 -145904095 - LTR32 LTR ERVL 0 471 9 1675 183 106 43 chr4 38384865 38385192 -145903470 + LTR29 LTR ERV1 137 442 -153 2429 136 28 19 chr4 38385192 38385553 -145903109 + THE1B LTR MaLR 1 364 0 12153 94 14 6 chr4 38385553 38387121 -145901541 + THE1B-int LTR MaLR 1 1580 0 2122 126 7 126 chr4 38387121 38387534 -145901128 + THE1B LTR MaLR 1 364 0 1675 183 106 43 chr4 38387534 38387665 -145900997 + LTR29 LTR ERV1 441 591 -4 312 216 108 54 chr4 38387664 38387775 -145900887 - LTR8A LTR ERV1 -125 602 486 * 1252 132 13 70 chr4 38387896 38388124 -145900538 + MER20 DNA MER1_type 2 216 -3 2170 159 119 62 chr4 38388262 38388879 -145899783 - LTR8A LTR ERV1 0 727 34 202 310 101 16 chr4 38389506 38389635 -145899027 + L2 LINE L2 3133 3272 0 1217 221 58 42 chr4 38389996 38390426 -145898236 - LTR56 LTR ERV1 0 445 9 185 367 184 0 chr4 38391497 38391606 -145897056 - L2 LINE L2 0 3272 3144 889 240 47 47 chr4 38391623 38391923 -145896739 + LTR33 LTR ERVL 19 318 -203 654 174 94 7 chr4 38392589 38392727 -145895935 - MIR SINE MIR -105 157 8 803 256 78 8 chr4 38392754 38392996 -145895666 - MLT1J1 LTR MaLR 0 446 188 801 269 161 11 chr4 38393271 38393620 -145895042 - LTR33A LTR ERVL -16 507 107 575 186 145 8 chr4 38393621 38393745 -145894917 + MER49 LTR ERV1 1 141 -782 187 316 126 40 chr4 38394187 38394488 -145894174 + L2 LINE L2 1064 1390 -1924 281 26 0 26 chr4 38394720 38394759 -145893903 + (TG)n Simple_repeat Simple_repeat 1 38 0 315 291 9 18 chr4 38394864 38394974 -145893688 - L1ME LINE L1 -452 5669 5561 1849 175 3 0 chr4 38395384 38395687 -145892975 + AluJo SINE Alu 1 304 -8 250 339 9 0 chr4 38395775 38395890 -145892772 - L1ME LINE L1 -1131 5015 4900 327 245 21 43 chr4 38396068 38396162 -145892500 - MIR3 SINE MIR -12 196 105 506 309 14 0 chr4 38396681 38396820 -145891842 + MIR3 SINE MIR 62 202 -6 22 0 0 0 chr4 38397216 38397238 -145891424 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr4 38397968 38397990 -145890672 + AT_rich Low_complexity Low_complexity 1 22 0 324 0 0 0 chr4 38398177 38398213 -145890449 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1613 144 0 0 chr4 38398220 38398456 -145890206 - AluSx SINE Alu -57 255 20 242 36 0 0 chr4 38398467 38398495 -145890167 - AluY SINE Alu -253 48 21 418 259 59 70 chr4 38398515 38398801 -145889861 - L1ME3 LINE L1 -196 5966 5684 1083 209 163 30 chr4 38398838 38399139 -145889523 + MER58B DNA MER1_type 1 341 0 22 0 0 0 chr4 38399351 38399373 -145889289 + AT_rich Low_complexity Low_complexity 1 22 0 2438 121 149 52 chr4 38400124 38400647 -145888015 + MER4B LTR ERV1 1 761 -18 2185 94 25 0 chr4 38400647 38400946 -145887716 - AluSx SINE Alu 0 306 1 2438 121 149 52 chr4 38400946 38400967 -145887695 + MER4B LTR ERV1 761 779 0 1735 133 3 110 chr4 38401316 38401540 -145887122 - AluJb SINE Alu -11 301 123 2380 113 61 12 chr4 38401540 38401886 -145886776 + THE1B LTR MaLR 2 364 0 1735 133 3 110 chr4 38401886 38401998 -145886664 - AluJb SINE Alu -189 123 1 282 224 86 2 chr4 38402005 38402086 -145886576 - L1M1 LINE L1 -607 5577 5512 2110 141 0 0 chr4 38402706 38403011 -145885651 + AluSq SINE Alu 1 305 -8 2290 234 44 14 chr4 38403053 38403686 -145884976 - MER97a DNA MER1_type? 0 894 243 647 233 0 14 chr4 38403758 38403904 -145884758 + MER33 DNA MER1_type 2 145 -179 373 191 0 0 chr4 38403896 38403964 -145884698 + MLT1F1 LTR MaLR 500 567 0 * 565 158 39 31 chr4 38404137 38404264 -145884398 + L1MB3 LINE L1 6054 6181 -2 405 0 0 0 chr4 38404936 38404981 -145883681 + (TG)n Simple_repeat Simple_repeat 1 45 0 243 61 0 0 chr4 38404981 38405014 -145883648 + (GA)n Simple_repeat Simple_repeat 2 34 0 188 125 25 50 chr4 38405047 38405087 -145883575 - MER5B DNA MER1_type -124 54 16 2337 113 0 0 chr4 38405173 38405482 -145883180 - AluSc SINE Alu 0 309 1 541 222 216 0 chr4 38405495 38405662 -145883000 + L2 LINE L2 1945 2147 -1167 1523 271 91 35 chr4 38405743 38405937 -145882725 - HAL1 LINE L1 0 2507 2325 225 0 0 0 chr4 38405937 38405962 -145882700 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1523 271 91 35 chr4 38405962 38405997 -145882665 - HAL1 LINE L1 -182 2325 2293 1564 153 46 49 chr4 38405997 38406179 -145882483 - AluJb SINE Alu -6 306 124 2080 107 38 3 chr4 38406179 38406468 -145882194 + AluSp SINE Alu 5 303 -10 1564 153 46 49 chr4 38406468 38406592 -145882070 - AluJb SINE Alu -188 124 1 1523 271 91 35 chr4 38406592 38407110 -145881552 - HAL1 LINE L1 -214 2293 1717 2991 259 95 63 chr4 38407116 38407328 -145881334 - HAL1 LINE L1 -1087 1420 1216 1783 164 7 10 chr4 38407328 38407620 -145881042 + AluJb SINE Alu 1 291 -21 2991 259 95 63 chr4 38407620 38408774 -145879888 - HAL1 LINE L1 -1291 1216 10 2125 137 73 9 chr4 38409068 38409411 -145879251 + MLT1A1 LTR MaLR 1 365 0 2038 147 129 48 chr4 38410036 38410432 -145878230 - MSTA LTR MaLR 0 428 1 198 0 0 0 chr4 38410799 38410821 -145877841 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 198 0 0 0 chr4 38410883 38410905 -145877757 + (A)n Simple_repeat Simple_repeat 1 22 0 2439 87 0 3 chr4 38411408 38411720 -145876942 + AluSx SINE Alu 1 311 -1 361 267 23 0 chr4 38412060 38412146 -145876516 - L2 LINE L2 0 3313 3226 2039 191 26 19 chr4 38412269 38412361 -145876301 - MER63B DNA MER1_type -626 436 346 2514 122 96 15 chr4 38412361 38412756 -145875906 + MSTA LTR MaLR 1 427 -1 2039 191 26 19 chr4 38412756 38413088 -145875574 - MER63B DNA MER1_type -716 346 9 362 292 229 0 chr4 38413096 38413240 -145875422 - L2 LINE L2 -261 3052 2876 684 187 73 81 chr4 38413337 38413387 -145875275 + L1MC5 LINE L1 7350 7399 -562 2329 110 0 19 chr4 38413387 38413705 -145874957 + AluSx SINE Alu 1 312 0 684 187 73 81 chr4 38413705 38413900 -145874762 + L1MC5 LINE L1 7399 7593 -368 7065 52 14 19 chr4 38413909 38415414 -145873248 + SVA Other Other 5 1386 0 21 0 0 0 chr4 38415949 38415970 -145872692 + AT_rich Low_complexity Low_complexity 1 21 0 964 181 50 50 chr4 38416015 38416297 -145872365 + L1MC5 LINE L1 7580 7861 -100 448 322 20 45 chr4 38416631 38416830 -145871832 + MIR3 SINE MIR 3 196 -12 2253 119 0 0 chr4 38417265 38417559 -145871103 + AluSg SINE Alu 1 294 -16 1905 130 0 34 chr4 38418246 38418560 -145870102 + AluSx SINE Alu 1 304 0 1202 114 0 0 chr4 38418560 38418727 -145869935 + AluSg/x SINE Alu 135 301 -9 693 194 161 0 chr4 38418735 38418921 -145869741 - L1ME3A LINE L1 -28 6142 5927 809 219 70 0 chr4 38418943 38419144 -145869518 - L1ME1 LINE L1 -11 6155 5941 848 69 25 119 chr4 38419157 38419316 -145869346 - AluJb SINE Alu -11 301 158 798 234 20 63 chr4 38419358 38419610 -145869052 - L1ME1 LINE L1 -277 5893 5653 1727 208 39 48 chr4 38419762 38420175 -145868487 + LTR2 LTR ERV1 41 449 0 382 263 40 44 chr4 38420176 38420468 -145868194 - L1ME1 LINE L1 -1123 5023 4650 190 227 45 0 chr4 38420500 38420544 -145868118 + L2 LINE L2 3202 3247 -25 764 178 52 35 chr4 38421856 38422030 -145866632 + MER45A DNA AcHobo 1 177 -1 187 163 122 20 chr4 38422069 38422118 -145866544 + L2 LINE L2 3259 3312 -1 184 288 88 12 chr4 38423397 38423477 -145865185 + MIR SINE MIR 91 176 -86 297 346 37 0 chr4 38423682 38423818 -145864844 - MIR SINE MIR -86 176 36 219 69 0 0 chr4 38423948 38423977 -145864685 + (TA)n Simple_repeat Simple_repeat 1 29 0 411 211 192 0 chr4 38424440 38424544 -145864118 - L2 LINE L2 0 3313 3190 2163 134 3 0 chr4 38425015 38425320 -145863342 + AluJb SINE Alu 1 306 -6 1888 238 118 36 chr4 38425468 38426018 -145862644 - MLT1G1 LTR MaLR 0 595 1 227 330 0 62 chr4 38426215 38426327 -145862335 - L3 LINE CR1 -36 1541 1437 579 344 38 8 chr4 38426780 38427042 -145861620 - L3 LINE CR1 -128 1449 1180 1705 179 7 17 chr4 38427381 38427672 -145860990 + AluJo SINE Alu 5 292 -20 718 248 120 21 chr4 38427815 38428049 -145860613 - MIR SINE MIR -3 259 3 286 236 112 11 chr4 38428062 38428151 -145860511 + MIR SINE MIR 47 144 -118 1713 183 10 20 chr4 38428157 38428457 -145860205 + AluJo SINE Alu 1 297 -15 308 208 158 30 chr4 38429252 38429353 -145859309 - MIR SINE MIR 0 262 149 742 250 12 0 chr4 38429417 38429589 -145859073 - MER58B DNA MER1_type 0 341 168 288 111 0 0 chr4 38430950 38430995 -145857667 + (TG)n Simple_repeat Simple_repeat 2 46 0 849 175 44 92 chr4 38431099 38431327 -145857335 - MER20 DNA MER1_type -2 217 1 385 358 30 6 chr4 38431329 38431494 -145857168 + MIR3 SINE MIR 28 196 -12 2162 116 0 0 chr4 38432000 38432292 -145856370 - AluSx SINE Alu -20 292 1 2251 97 20 7 chr4 38433223 38433523 -145855139 - AluSq SINE Alu -9 304 1 2034 144 3 7 chr4 38434483 38434789 -145853873 - AluSx SINE Alu -3 309 5 606 211 15 0 chr4 38434828 38434961 -145853701 - MER58B DNA MER1_type -6 335 201 231 167 0 0 chr4 38435056 38435098 -145853564 + (TG)n Simple_repeat Simple_repeat 2 43 0 317 247 47 12 chr4 38435165 38435250 -145853412 + L1MC4 LINE L1 6619 6706 -1336 432 0 0 0 chr4 38435271 38435319 -145853343 + (TG)n Simple_repeat Simple_repeat 1 48 0 435 262 107 48 chr4 38435635 38435841 -145852821 - Charlie8 DNA MER1_type -2162 255 38 271 279 0 0 chr4 38435941 38436002 -145852660 + (TG)n Simple_repeat Simple_repeat 2 62 0 314 309 105 33 chr4 38436014 38436224 -145852438 - L1ME LINE L1 -492 5629 5405 301 91 18 18 chr4 38436281 38436336 -145852326 + (TA)n Simple_repeat Simple_repeat 1 55 0 696 226 65 57 chr4 38436716 38436784 -145851878 - MIR SINE MIR 0 262 196 1948 149 0 7 chr4 38436784 38437086 -145851576 - AluJb SINE Alu -12 300 1 696 226 65 57 chr4 38437086 38437265 -145851397 - MIR SINE MIR -66 196 13 375 242 53 8 chr4 38437303 38437435 -145851227 - L1 LINE L1 -1310 4836 4699 25 23 0 23 chr4 38437712 38437734 -145850928 + AT_rich Low_complexity Low_complexity 1 23 -19 2004 110 4 0 chr4 38437734 38437997 -145850665 - AluSp SINE Alu -14 299 36 25 23 0 23 chr4 38437997 38438017 -145850645 + AT_rich Low_complexity Low_complexity 23 42 0 2215 127 0 25 chr4 38438809 38439125 -145849537 + AluSx SINE Alu 1 308 -4 198 0 0 0 chr4 38439228 38439250 -145849412 + (TTTAA)n Simple_repeat Simple_repeat 3 24 0 1698 100 4 8 chr4 38490282 38490522 -145798140 + AluSg SINE Alu 49 287 -23 732 139 9 0 chr4 38490625 38490733 -145797929 - AluSg/x SINE Alu -11 301 193 2134 47 4 0 chr4 38490834 38491092 -145797570 - AluY SINE Alu -52 259 1 2329 91 3 0 chr4 38491094 38491403 -145797259 - AluSx SINE Alu -2 310 1 198 71 0 0 chr4 38491520 38491548 -145797114 + (GA)n Simple_repeat Simple_repeat 1 28 0 2243 89 0 3 chr4 38491878 38492182 -145796480 - AluSx SINE Alu -9 303 1 879 207 6 0 chr4 38492579 38492748 -145795914 - FRAM SINE Alu 0 40 1 587 168 11 0 chr4 38492748 38492843 -145795819 - AluJ/FLAM SINE Alu -215 97 2 537 357 24 39 chr4 38492965 38493220 -145795442 - L3 LINE CR1 -460 1117 867 552 307 22 39 chr4 38495103 38495282 -145793380 + MER91A DNA MER1_type 3 178 -18 22 35 0 0 chr4 38495306 38495335 -145793327 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 38495865 38495886 -145792776 + AT_rich Low_complexity Low_complexity 1 21 0 193 381 9 0 chr4 38496380 38496485 -145792177 + L2 LINE L2 2511 2616 -698 345 229 110 18 chr4 38496999 38497108 -145791554 + MIR SINE MIR 132 250 -12 1961 119 19 19 chr4 38497267 38497578 -145791084 + AluSq SINE Alu 3 313 0 592 145 16 32 chr4 38498572 38498657 -145790005 + Charlie4a DNA MER1_type 69 153 -1808 1292 133 87 5 chr4 38498657 38498875 -145789787 - MER46A DNA MER2_type 0 236 1 592 145 16 32 chr4 38498875 38498913 -145789749 + Charlie4a DNA MER1_type 153 190 -1771 1832 221 73 70 chr4 38498927 38499239 -145789423 - MER21B LTR ERV1 -62 869 559 2194 75 0 0 chr4 38499239 38499546 -145789116 + AluY SINE Alu 1 307 0 1832 221 73 70 chr4 38499546 38499908 -145788754 - MER21B LTR ERV1 -372 559 98 229 204 0 23 chr4 38499987 38500031 -145788631 - MER21B LTR ERV1 -780 83 41 933 214 110 3 chr4 38500064 38500354 -145788308 + Charlie4a DNA MER1_type 188 508 0 22 0 0 0 chr4 38500600 38500622 -145788040 + AT_rich Low_complexity Low_complexity 1 22 0 198 316 18 0 chr4 38500710 38500767 -145787895 - L2 LINE L2 0 3313 3256 1028 112 0 0 chr4 38501135 38501278 -145787384 + AluSg/x SINE Alu 158 300 -10 21 0 0 0 chr4 38501516 38501537 -145787125 + AT_rich Low_complexity Low_complexity 1 21 0 203 319 155 17 chr4 38501544 38501660 -145787002 - L2 LINE L2 -20 3293 3162 186 43 0 0 chr4 38501668 38501691 -145786971 + (TG)n Simple_repeat Simple_repeat 2 24 0 1659 159 11 25 chr4 38501723 38502006 -145786656 + AluJo SINE Alu 11 289 -23 2131 101 3 7 chr4 38502118 38502415 -145786247 - AluSc SINE Alu -13 296 1 528 278 73 40 chr4 38502415 38502663 -145785999 + L2 LINE L2 3051 3306 -7 184 300 20 0 chr4 38503453 38503503 -145785159 - L2 LINE L2 -17 3255 3205 522 211 88 119 chr4 38504814 38504963 -145783699 - MIR SINE MIR -2 260 121 662 139 0 111 chr4 38504963 38505107 -145783555 + FLAM_A SINE Alu 1 128 -5 522 211 88 119 chr4 38505107 38505217 -145783445 - MIR SINE MIR -141 121 9 249 276 200 14 chr4 38505241 38505386 -145783276 - L3b LINE CR1 -135 1448 1277 743 190 61 37 chr4 38505781 38505944 -145782718 - MER5A DNA MER1_type -8 181 15 231 61 0 0 chr4 38506266 38506299 -145782363 + (CCCTG)n Simple_repeat Simple_repeat 3 35 0 265 384 20 0 chr4 38506585 38506736 -145781926 + L2 LINE L2 2934 3087 -185 1943 113 7 20 chr4 38507196 38507498 -145781164 + AluSc SINE Alu 1 298 -11 313 143 129 14 chr4 38507674 38507744 -145780918 - MADE1 DNA Mariner -2 78 1 382 351 73 64 chr4 38508426 38508756 -145779906 - L2 LINE L2 -5 3267 2935 781 246 0 6 chr4 38508898 38509069 -145779593 + FRAM SINE Alu 1 164 -12 963 148 7 0 chr4 38509340 38509495 -145779167 + AluJb SINE Alu 136 291 -21 565 213 33 0 chr4 38509859 38509981 -145778681 + MER5B DNA MER1_type 53 178 0 353 298 16 0 chr4 38509993 38510114 -145778548 + MER5B DNA MER1_type 3 125 -53 2850 71 5 14 chr4 38510921 38511288 -145777374 - THE1B LTR MaLR 0 364 1 199 222 0 83 chr4 38511882 38511954 -145776708 - MER5B DNA MER1_type -111 67 2 756 115 0 0 chr4 38512031 38512135 -145776527 + MLT1C LTR MaLR 1 104 -363 1450 155 21 4 chr4 38512135 38512374 -145776288 - Tigger5 DNA MER2_type 0 2323 2081 365 241 0 13 chr4 38512368 38512447 -145776215 - Tigger5 DNA MER2_type -2245 78 1 * 1993 159 13 27 chr4 38512447 38512817 -145775845 + MLT1C LTR MaLR 103 467 0 1543 186 13 19 chr4 38513679 38513991 -145774671 - AluJb SINE Alu 0 312 3 307 261 234 43 chr4 38514474 38514658 -145774004 + MIR SINE MIR 30 248 -14 4285 143 106 1 chr4 38515244 38516598 -145772064 - pTR5 LTR ERV1 0 2606 1524 25 0 0 0 chr4 38516624 38516649 -145772013 + AT_rich Low_complexity Low_complexity 1 25 0 2175 116 0 3 chr4 38516691 38517002 -145771660 - AluSg SINE Alu 0 310 1 335 345 129 14 chr4 38517955 38518164 -145770498 + MIR SINE MIR 29 261 -1 563 311 52 4 chr4 38518589 38518837 -145769825 - MIR SINE MIR 0 262 3 701 224 23 0 chr4 38519435 38519609 -145769053 - MER96B DNA MER1_type? -239 178 1 314 359 39 0 chr4 38520800 38520903 -145767759 + L2 LINE L2 3121 3227 -45 200 200 0 0 chr4 38521068 38521103 -145767559 - MIR SINE MIR -55 153 119 2377 64 0 10 chr4 38522078 38522415 -145766247 - AluY SINE Alu 0 334 1 851 224 0 0 chr4 38522417 38522578 -145766084 - FRAM SINE Alu -5 161 1 24 0 0 0 chr4 38522945 38522969 -145765693 + AT_rich Low_complexity Low_complexity 1 24 0 1458 174 64 7 chr4 38522978 38523259 -145765403 + AluJb SINE Alu 1 297 -15 362 229 48 12 chr4 38523296 38523379 -145765283 - MIR SINE MIR -72 190 105 454 157 90 60 chr4 38523586 38523720 -145764942 - MER117 DNA MER1_type -27 170 33 342 0 0 0 chr4 38523809 38523847 -145764815 + (TGGA)n Simple_repeat Simple_repeat 3 40 0 556 282 102 23 chr4 38524918 38525134 -145763528 + MIR SINE MIR 20 252 -10 1384 244 48 11 chr4 38525206 38525641 -145763021 + L1 LINE L1 3223 3673 -2473 955 224 58 42 chr4 38525653 38525912 -145762750 + L2 LINE L2 3049 3311 -2 492 279 140 41 chr4 38526024 38526283 -145762379 - L2 LINE L2 -1262 2052 1735 1941 92 0 22 chr4 38526283 38526555 -145762107 + AluY SINE Alu 1 266 -45 492 279 140 41 chr4 38526555 38526710 -145761952 - L2 LINE L2 -1579 1735 1597 1956 87 80 0 chr4 38527250 38527537 -145761125 - AluSg SINE Alu 0 310 1 478 196 134 27 chr4 38528832 38528944 -145759718 - L2 LINE L2 0 3313 3190 252 154 0 0 chr4 38529354 38529406 -145759256 + (TG)n Simple_repeat Simple_repeat 2 53 0 224 317 129 10 chr4 38529492 38529593 -145759069 + MIR SINE MIR 20 132 -130 631 294 47 19 chr4 38529619 38529833 -145758829 - MIR SINE MIR -22 240 21 632 207 41 0 chr4 38529917 38530038 -145758624 - MLT1J LTR MaLR -133 378 253 22 0 0 0 chr4 38530248 38530270 -145758392 + AT_rich Low_complexity Low_complexity 1 22 0 699 243 102 35 chr4 38530285 38530511 -145758151 - MLT1J LTR MaLR -270 241 1 1975 183 46 3 chr4 38531387 38531737 -145756925 + MLT1A1 LTR MaLR 1 365 0 185 323 32 65 chr4 38532397 38532490 -145756172 - L3b LINE CR1 -85 1498 1409 339 274 210 6 chr4 38532962 38533119 -145755543 - MIR3 SINE MIR 0 208 20 659 312 98 0 chr4 38533369 38533584 -145755078 + MIR SINE MIR 8 243 -19 22 35 0 0 chr4 38533753 38533782 -145754880 + AT_rich Low_complexity Low_complexity 1 29 0 1904 150 0 3 chr4 38533834 38534141 -145754521 + AluSx SINE Alu 1 306 -6 779 246 103 88 chr4 38534151 38534549 -145754113 - MLT1J2 LTR MaLR -15 431 28 510 243 0 0 chr4 38534655 38534758 -145753904 - L2 LINE L2 0 3313 3211 393 246 31 23 chr4 38534799 38534929 -145753733 + MER69 DNA AcHobo 2395 2525 -1 390 206 152 49 chr4 38534930 38535114 -145753548 - L2 LINE L2 -97 3216 3014 334 300 43 21 chr4 38535127 38535267 -145753395 - L1ME LINE L1 -381 5740 5598 2062 145 10 0 chr4 38535545 38535848 -145752814 + AluSg SINE Alu 1 306 -4 405 293 21 21 chr4 38535848 38535988 -145752674 - MIR3 SINE MIR -33 175 36 186 192 0 39 chr4 38536111 38536163 -145752499 + MIR SINE MIR 174 223 -39 895 58 69 0 chr4 38536970 38537244 -145751418 + (TAGA)n Simple_repeat Simple_repeat 3 294 0 257 328 8 47 chr4 38537658 38537786 -145750876 - L2 LINE L2 -1 3271 3149 731 281 13 91 chr4 38538016 38538367 -145750295 - MLT1I LTR MaLR -1 408 102 263 372 107 30 chr4 38538424 38538650 -145750012 - L2 LINE L2 -385 2929 2722 2420 100 0 0 chr4 38538650 38538959 -145749703 + AluSx SINE Alu 1 309 -3 263 372 107 30 chr4 38538959 38539292 -145749370 - L2 LINE L2 -592 2722 2319 1877 198 117 5 chr4 38539292 38539712 -145748950 + MLT1C LTR MaLR 1 467 0 263 372 107 30 chr4 38539712 38539750 -145748912 - L2 LINE L2 -995 2319 2285 510 312 89 61 chr4 38540000 38540461 -145748201 - L2 LINE L2 -8 3305 2832 234 0 0 0 chr4 38540461 38540487 -145748175 + (TG)n Simple_repeat Simple_repeat 2 27 0 328 281 70 9 chr4 38540501 38540615 -145748047 - L2 LINE L2 -638 2676 2556 2425 174 21 2 chr4 38541284 38541708 -145746954 + MSTB1 LTR MaLR 1 432 0 241 292 0 52 chr4 38542707 38542803 -145745859 + L1ME4a LINE L1 5955 6045 -76 189 0 0 0 chr4 38543408 38543429 -145745233 + (CCCCCA)n Simple_repeat Simple_repeat 2 22 0 1305 194 69 22 chr4 38544823 38544906 -145743756 - MER33 DNA MER1_type -2261 324 246 2260 116 0 0 chr4 38544906 38545208 -145743454 + AluSc SINE Alu 1 302 -7 1305 194 69 22 chr4 38545208 38545230 -145743432 - MER33 DNA MER1_type -2339 246 226 941 252 132 22 chr4 38545230 38545587 -145743075 + MSTD LTR MaLR 1 396 0 1305 194 69 22 chr4 38545587 38545802 -145742860 - MER33 DNA MER1_type -2359 226 1 2288 184 44 0 chr4 38545953 38546361 -145742301 + MSTB LTR MaLR 1 426 0 2145 124 24 37 chr4 38547218 38547598 -145741064 + THE1C LTR MaLR 1 375 0 384 285 175 26 chr4 38549021 38549460 -145739202 - L2 LINE L2 -1 3312 2799 339 311 56 67 chr4 38549463 38549530 -145739132 + MLT1J LTR MaLR 5 71 -379 2412 72 0 20 chr4 38549530 38549836 -145738826 - AluSx SINE Alu -12 300 1 339 311 56 67 chr4 38549836 38549981 -145738681 + MLT1J LTR MaLR 71 175 -275 851 170 79 0 chr4 38550116 38550281 -145738381 + MER5A DNA MER1_type 12 189 0 1137 159 18 49 chr4 38550289 38550515 -145738147 - MER20 DNA MER1_type 0 219 1 313 243 40 81 chr4 38550525 38550673 -145737989 + MLT1J LTR MaLR 330 471 -40 418 255 59 39 chr4 38550712 38550865 -145737797 - L2 LINE L2 -511 2803 2648 350 234 175 36 chr4 38550869 38551006 -145737656 - L2 LINE L2 -809 2505 2350 288 271 0 24 chr4 38551099 38551184 -145737478 + L1MC4a LINE L1 5736 5818 -1990 2041 104 73 3 chr4 38551191 38551479 -145737183 + AluSc SINE Alu 1 308 -1 358 252 206 37 chr4 38551519 38551733 -145736929 + MIR SINE MIR 13 262 0 259 260 100 10 chr4 38551742 38551842 -145736820 + L1MC4a LINE L1 5829 5937 -1871 234 229 0 33 chr4 38552852 38552913 -145735749 + MIR SINE MIR 183 241 -21 266 288 127 67 chr4 38553144 38553205 -145735457 - L3 LINE CR1 -685 892 836 795 211 50 6 chr4 38553205 38553385 -145735277 - MER5A DNA MER1_type -1 188 1 266 288 127 67 chr4 38553385 38553638 -145735024 - L3 LINE CR1 -741 836 559 481 299 23 11 chr4 38553638 38553812 -145734850 - MER5B DNA MER1_type 0 178 3 342 263 66 29 chr4 38553910 38554047 -145734615 - L3 LINE CR1 -1102 475 334 229 283 150 0 chr4 38554133 38554253 -145734409 - MIR SINE MIR 0 262 125 1185 188 207 39 chr4 38555334 38555643 -145733019 - MLT1A1 LTR MaLR -4 361 1 248 235 134 84 chr4 38555853 38555972 -145732690 + L2 LINE L2 3155 3279 -34 904 248 178 9 chr4 38556958 38557401 -145731261 + Charlie7 DNA MER1_type 1803 2320 -292 1148 257 96 20 chr4 38558690 38559205 -145729457 + MLT2E LTR ERVL 7 608 -20 21 36 0 0 chr4 38560934 38560962 -145727700 + AT_rich Low_complexity Low_complexity 1 28 0 249 275 43 0 chr4 38562245 38562314 -145726348 + MLT1I LTR MaLR 330 401 -8 624 156 0 0 chr4 38563037 38563146 -145725516 + (CA)n Simple_repeat Simple_repeat 2 110 0 723 200 91 78 chr4 38565016 38565336 -145723326 + L1M4 LINE L1 5045 5368 -778 330 264 194 8 chr4 38565567 38565696 -145722966 + L2 LINE L2 3107 3259 -13 183 260 20 0 chr4 38566072 38566122 -145722540 + MIR3 SINE MIR 149 199 -9 2581 63 0 0 chr4 38566166 38566468 -145722194 - AluSq SINE Alu -11 302 1 495 209 11 0 chr4 38566592 38566683 -145721979 + MLT1A1 LTR MaLR 274 365 0 450 231 0 0 chr4 38568714 38568831 -145719831 + (CA)n Simple_repeat Simple_repeat 1 117 0 467 221 133 65 chr4 38568840 38568911 -145719751 - MIR SINE MIR -10 252 187 2700 49 0 0 chr4 38568911 38569217 -145719445 - AluY SINE Alu -5 306 1 467 221 133 65 chr4 38569217 38569349 -145719313 - MIR SINE MIR -75 187 36 232 98 0 0 chr4 38569364 38569405 -145719257 + MADE1 DNA Mariner 40 80 0 210 233 17 50 chr4 38569658 38569718 -145718944 + L2 LINE L2 3246 3303 -10 439 298 21 0 chr4 38570461 38570652 -145718010 - L1ME LINE L1 -317 5804 5610 2149 112 6 13 chr4 38570698 38571010 -145717652 - AluSx SINE Alu -2 310 1 602 263 86 17 chr4 38571719 38571951 -145716711 + LTR33 LTR ERVL 21 268 -253 2205 181 29 84 chr4 38572017 38572603 -145716059 + MLT2B3 LTR ERVL 1 554 0 309 240 60 20 chr4 38572622 38572722 -145715940 + LTR33 LTR ERVL 410 513 -8 426 217 0 11 chr4 38572953 38573045 -145715617 - L2 LINE L2 0 3313 3223 1941 157 0 10 chr4 38573280 38573586 -145715076 - AluJo SINE Alu -9 303 1 2169 114 3 3 chr4 38574309 38574607 -145714055 + AluSg SINE Alu 1 298 -12 2125 141 0 0 chr4 38575610 38575916 -145712746 + AluSx SINE Alu 1 306 -6 480 237 69 91 chr4 38575916 38576088 -145712574 + Charlie8 DNA MER1_type 48 215 -115 2411 88 0 7 chr4 38576088 38576394 -145712268 + AluSg1 SINE Alu 1 304 -5 480 237 69 91 chr4 38576394 38576453 -145712209 + Charlie8 DNA MER1_type 215 274 -56 197 311 33 44 chr4 38576460 38576550 -145712112 - MIR SINE MIR -90 118 30 1512 145 4 0 chr4 38577437 38577671 -145710991 - AluSg/x SINE Alu -7 303 69 331 258 98 89 chr4 38578108 38578333 -145710329 - L1M4 LINE L1 -1978 4168 3942 1743 177 128 41 chr4 38578334 38578430 -145710232 - LOR1b LTR ERV1 0 461 375 2103 108 47 0 chr4 38578430 38578727 -145709935 - AluY SINE Alu 0 311 1 1743 177 128 41 chr4 38578727 38579043 -145709619 - LOR1b LTR ERV1 -86 375 13 2196 130 0 0 chr4 38579146 38579453 -145709209 - AluSx SINE Alu -5 307 1 399 253 41 36 chr4 38579458 38579652 -145709010 - L1M4 LINE L1 -2365 3781 3587 302 256 87 99 chr4 38579671 38579983 -145708679 - L1M4 LINE L1 -2629 3517 3210 829 183 16 52 chr4 38579983 38580174 -145708488 - AluJo SINE Alu -3 309 126 2525 63 0 7 chr4 38580257 38580559 -145708103 - AluY SINE Alu -11 300 1 397 279 26 19 chr4 38580793 38580947 -145707715 - L1MEd LINE L1 -5961 158 4 2159 115 7 10 chr4 38581704 38582009 -145706653 - AluSg SINE Alu -6 304 1 815 297 81 44 chr4 38582012 38582530 -145706132 - L1MC4a LINE L1 -303 5818 5352 23 54 0 0 chr4 38582636 38582673 -145705989 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr4 38582833 38582855 -145705807 + AT_rich Low_complexity Low_complexity 1 22 0 260 276 35 0 chr4 38583223 38583310 -145705352 + MIR SINE MIR 3 92 -170 787 142 12 31 chr4 38583347 38583509 -145705153 - THE1C LTR MaLR -21 354 196 238 125 214 0 chr4 38583610 38583666 -145704996 - MLT1F-int LTR MaLR -1302 69 2 2099 212 54 17 chr4 38583683 38584202 -145704460 - MLT1F LTR MaLR -2 540 3 1860 280 135 31 chr4 38584264 38584839 -145703823 - L2 LINE L2 -12 3301 2787 1853 69 53 4 chr4 38584839 38585086 -145703576 + AluY SINE Alu 38 296 -15 1860 280 135 31 chr4 38585086 38585757 -145702905 - L2 LINE L2 -526 2787 1923 25 0 0 0 chr4 38585834 38585859 -145702803 + AT_rich Low_complexity Low_complexity 1 25 0 458 258 30 15 chr4 38587170 38587302 -145701360 + MER5A DNA MER1_type 56 189 0 272 286 114 29 chr4 38588615 38588720 -145699942 + MIR3 SINE MIR 72 185 -23 914 124 8 0 chr4 38589835 38589964 -145698698 + FLAM_C SINE Alu 1 130 -3 505 282 56 45 chr4 38590197 38590552 -145698110 + L1ME4a LINE L1 5672 6030 -91 33 43 0 0 chr4 38590664 38590711 -145697951 + AT_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chr4 38591873 38591894 -145696768 + AT_rich Low_complexity Low_complexity 1 21 0 230 265 0 0 chr4 38592239 38592288 -145696374 + (CATATA)n Simple_repeat Simple_repeat 4 52 0 286 300 41 59 chr4 38592505 38592675 -145695987 + MIR SINE MIR 31 197 -65 2145 111 3 7 chr4 38593006 38593333 -145695329 - AluSx SINE Alu 0 312 1 377 295 168 6 chr4 38593344 38593517 -145695145 - MIR SINE MIR -14 248 48 210 368 21 21 chr4 38593854 38593998 -145694664 - MIR3 SINE MIR -23 185 42 2078 133 0 27 chr4 38594137 38594438 -145694224 + AluSx SINE Alu 1 293 -19 567 96 64 8 chr4 38594595 38594720 -145693942 + GA-rich Low_complexity Low_complexity 6 137 0 291 284 32 0 chr4 38595183 38595278 -145693384 + L2 LINE L2 3192 3289 -24 382 238 12 0 chr4 38595878 38595958 -145692704 - MER5A DNA MER1_type -100 89 9 243 0 0 0 chr4 38596084 38596111 -145692551 + (A)n Simple_repeat Simple_repeat 1 27 0 273 260 185 34 chr4 38597489 38597568 -145691094 + MER5A DNA MER1_type 22 88 -101 2703 45 0 3 chr4 38597568 38597877 -145690785 - AluY SINE Alu -3 308 1 273 260 185 34 chr4 38597877 38597943 -145690719 + MER5A DNA MER1_type 88 189 0 2386 156 68 29 chr4 38598166 38598652 -145690010 - MLT1D LTR MaLR 0 505 1 538 232 0 0 chr4 38598795 38598907 -145689755 - MER5A DNA MER1_type -77 112 1 1328 227 108 58 chr4 38599184 38599553 -145689109 + MLT1C LTR MaLR 1 397 -70 2561 71 0 3 chr4 38599553 38599861 -145688801 - AluSx SINE Alu -5 307 1 1328 227 108 58 chr4 38599861 38599936 -145688726 + MLT1C LTR MaLR 397 467 0 1095 218 4 27 chr4 38600255 38600480 -145688182 - MER58A DNA MER1_type 0 224 5 455 193 43 64 chr4 38601494 38601617 -145687045 - MIR SINE MIR -57 205 82 1982 143 167 19 chr4 38601617 38601803 -145686859 - MSTA LTR MaLR -2 426 269 180 0 0 0 chr4 38601803 38601823 -145686839 + (GA)n Simple_repeat Simple_repeat 1 20 0 1982 143 167 19 chr4 38601823 38602007 -145686655 - MSTA LTR MaLR -159 269 1 455 193 43 64 chr4 38602007 38602079 -145686583 - MIR SINE MIR -180 82 10 1617 188 0 14 chr4 38602513 38602827 -145685835 + AluJo SINE Alu 1 310 0 1880 225 118 6 chr4 38602888 38603364 -145685298 + MLT1H LTR MaLR 2 530 -19 281 253 50 66 chr4 38603397 38603579 -145685083 + L1MC1 LINE L1 5639 5817 -304 2050 121 74 6 chr4 38603735 38604058 -145684604 + L1MC1 LINE L1 5989 6333 0 2249 120 3 0 chr4 38604362 38604663 -145683999 - AluSx SINE Alu -10 302 1 2463 144 18 39 chr4 38604698 38604848 -145683814 - MSTA LTR MaLR 0 428 276 2399 54 0 10 chr4 38604848 38605142 -145683520 - AluY SINE Alu -19 292 2 2463 144 18 39 chr4 38605142 38605428 -145683234 - MSTA LTR MaLR -152 276 1 360 0 0 0 chr4 38605568 38605608 -145683054 + (TG)n Simple_repeat Simple_repeat 2 41 0 1282 194 53 106 chr4 38605668 38606265 -145682397 + L1MC5 LINE L1 6501 7065 -896 404 203 0 13 chr4 38606273 38606352 -145682310 - MLT1D LTR MaLR -421 84 7 322 315 138 7 chr4 38607718 38607867 -145680795 + MIR SINE MIR 17 182 -68 310 250 68 0 chr4 38608593 38608681 -145679981 - MER103 DNA DNA -51 115 22 516 260 67 0 chr4 38608783 38608933 -145679729 + LTR33 LTR ERVL 3 162 -359 542 236 76 0 chr4 38608990 38609134 -145679528 + LTR33 LTR ERVL 277 431 -90 205 273 45 11 chr4 38611624 38611712 -145676950 - MIR SINE MIR -70 192 102 281 297 49 22 chr4 38611717 38611902 -145676760 + MIR SINE MIR 53 242 -20 921 279 85 41 chr4 38613152 38613706 -145674956 - L1ME4a LINE L1 -216 5905 5320 649 220 45 34 chr4 38613838 38614015 -145674647 + MER97c DNA MER1_type? 1 179 -911 356 283 151 13 chr4 38614245 38614404 -145674258 - MER5A DNA MER1_type 0 189 9 626 246 31 66 chr4 38615318 38615546 -145673116 + MER58A DNA MER1_type 1 220 -4 216 157 214 14 chr4 38615643 38615713 -145672949 + MIR SINE MIR 93 176 -86 2173 133 3 0 chr4 38615724 38616026 -145672636 + AluSx SINE Alu 1 303 -9 1888 163 54 9 chr4 38617099 38617431 -145671231 + MER7A DNA MER2_type 1 345 -1 321 287 23 0 chr4 38620677 38620764 -145667898 - L2 LINE L2 -5 3308 3220 261 0 0 0 chr4 38621687 38621716 -145666946 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 231 237 34 0 chr4 38625527 38625586 -145663076 - L2 LINE L2 -4 3268 3208 343 309 120 42 chr4 38626749 38627108 -145661554 - L2 LINE L2 -5 3308 2922 505 208 71 56 chr4 38627123 38627335 -145661327 + MIR SINE MIR 10 234 -28 2229 114 0 3 chr4 38628016 38628324 -145660338 + AluSq SINE Alu 1 307 -6 204 97 0 0 chr4 38629337 38629368 -145659294 + (TG)n Simple_repeat Simple_repeat 2 32 0 1279 198 81 0 chr4 38629382 38629680 -145658982 - MER33 DNA MER1_type 0 324 3 909 222 6 0 chr4 38630126 38630293 -145658369 + MER45A DNA AcHobo 1 168 -10 336 203 14 54 chr4 38631644 38631718 -145656944 + Charlie1 DNA MER1_type 1 71 -2690 1111 173 112 46 chr4 38631718 38632112 -145656550 + Charlie1 DNA MER1_type 2342 2761 0 225 306 58 16 chr4 38633029 38633150 -145655512 + MER5A DNA MER1_type 37 162 -27 477 213 52 77 chr4 38633801 38633956 -145654706 - MER63 DNA MER1_type -285 777 1 207 0 0 0 chr4 38635810 38635833 -145652829 + (A)n Simple_repeat Simple_repeat 1 23 0 249 314 50 25 chr4 38637235 38637356 -145651306 - L2 LINE L2 -15 3298 3175 3397 156 7 4 chr4 38637424 38637977 -145650685 + L1PA16 LINE L1 5608 6162 -4 338 245 69 0 chr4 38638015 38638117 -145650545 + MIR SINE MIR 80 188 -74 2462 70 0 7 chr4 38638356 38638656 -145650006 + AluY SINE Alu 1 298 -13 451 214 0 2 chr4 38638756 38638925 -145649737 + MER2 DNA MER2_type 144 345 0 1816 175 3 7 chr4 38639701 38640009 -145648653 - AluJo SINE Alu -5 307 1 2314 40 0 0 chr4 38640358 38640631 -145648031 - L1PA4 LINE L1 -8 6147 5875 289 337 77 0 chr4 38641463 38641644 -145647018 - MIR SINE MIR -10 252 58 829 225 145 66 chr4 38641993 38642400 -145646262 + MLT1D LTR MaLR 5 390 0 540 206 38 23 chr4 38643060 38643191 -145645471 + MER94 DNA DNA 1 133 -1 211 339 33 33 chr4 38644301 38644422 -145644240 - MIR3 SINE MIR -16 192 72 213 319 14 0 chr4 38644521 38644590 -145644072 + MIR SINE MIR 77 146 -116 2138 100 0 48 chr4 38644730 38644866 -145643796 + AluSq SINE Alu 1 142 -171 2508 70 0 10 chr4 38644866 38645167 -145643495 + AluY SINE Alu 1 298 -13 2138 100 0 48 chr4 38645167 38645340 -145643322 + AluSq SINE Alu 142 295 -18 942 177 135 15 chr4 38645580 38645840 -145642822 - MER5C DNA MER1_type -1 323 33 456 274 98 12 chr4 38645913 38646077 -145642585 - MIR SINE MIR -79 183 6 192 254 153 25 chr4 38646755 38646873 -145641789 + L2 LINE L2 2442 2574 -740 393 224 84 35 chr4 38646984 38647127 -145641535 - L3 LINE CR1 -195 1382 1233 24 0 0 0 chr4 38647569 38647593 -145641069 + AT_rich Low_complexity Low_complexity 1 24 0 288 143 0 41 chr4 38648657 38648706 -145639956 + AluSp SINE Alu 120 166 -137 2185 130 0 0 chr4 38648835 38649142 -145639520 + AluSx SINE Alu 1 307 -5 1883 148 0 11 chr4 38649838 38650122 -145638540 - AluJb SINE Alu -31 281 1 196 349 18 28 chr4 38650149 38650258 -145638404 - MIR SINE MIR -147 115 8 23 33 0 0 chr4 38650279 38650309 -145638353 + AT_rich Low_complexity Low_complexity 1 30 0 1894 219 87 15 chr4 38650536 38651056 -145637606 + L1MB8 LINE L1 5622 6178 0 2391 55 0 39 chr4 38651317 38651666 -145636996 - AluY SINE Alu 0 338 2 470 261 19 6 chr4 38652660 38652817 -145635845 - MIR SINE MIR -15 247 89 593 288 74 93 chr4 38653400 38653927 -145634735 - L3 LINE CR1 -816 761 245 252 77 0 0 chr4 38654376 38654415 -145634247 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 477 286 49 5 chr4 38654615 38654800 -145633862 + MIR SINE MIR 16 208 -54 556 274 61 74 chr4 38654869 38655248 -145633414 + MLT1H LTR MaLR 29 402 -147 232 259 99 25 chr4 38655216 38655297 -145633365 + MLT1I LTR MaLR 281 367 -42 * 479 340 57 39 chr4 38655620 38655902 -145632760 - L2 LINE L2 -1 3312 3026 2092 108 0 0 chr4 38656443 38656712 -145631950 + AluSg SINE Alu 1 269 -41 368 255 201 7 chr4 38656806 38656955 -145631707 - MER5A DNA MER1_type -1 188 11 2258 91 0 0 chr4 38657482 38657767 -145630895 + AluSx SINE Alu 12 296 -16 544 292 68 68 chr4 38657817 38658290 -145630372 - L2 LINE L2 0 3313 2841 522 310 50 25 chr4 38659755 38659997 -145628665 + MIR SINE MIR 12 259 -3 3036 193 70 35 chr4 38662131 38662835 -145625827 + L1MB3 LINE L1 5440 6167 -16 1845 108 10 98 chr4 38662916 38663223 -145625439 - AluSx SINE Alu -14 298 19 735 75 83 8 chr4 38665511 38665610 -145623052 + MER30 DNA MER1_type 1 112 -118 216 0 0 0 chr4 38665610 38665634 -145623028 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 735 75 83 8 chr4 38665634 38665654 -145623008 + MER30 DNA MER1_type 112 129 -101 234 270 36 102 chr4 38666272 38666409 -145622253 + MIR3 SINE MIR 35 162 -46 527 139 66 209 chr4 38666648 38666892 -145621770 + MER3 DNA MER1_type 1 209 0 2355 74 3 14 chr4 38668321 38668617 -145620045 + AluSc SINE Alu 1 293 -16 1779 161 7 16 chr4 38668863 38669167 -145619495 + AluJo SINE Alu 1 301 -11 182 365 28 9 chr4 38669416 38669523 -145619139 + MIR SINE MIR 14 122 -140 2229 102 0 13 chr4 38669547 38669850 -145618812 + AluSx SINE Alu 3 301 -11 304 237 53 61 chr4 38670112 38670226 -145618436 + MER5A DNA MER1_type 77 189 0 500 104 0 104 chr4 38670251 38670347 -145618315 + AluS SINE Alu 5 90 -222 581 313 30 30 chr4 38671235 38671468 -145617194 - MIR SINE MIR 0 262 30 1062 68 0 0 chr4 38671477 38671610 -145617052 - AluSp/q SINE Alu -5 308 176 236 191 0 0 chr4 38672091 38672138 -145616524 - L2 LINE L2 -2 3311 3265 597 258 46 94 chr4 38672271 38672600 -145616062 + MLT1I LTR MaLR 72 384 -25 206 195 0 0 chr4 38673107 38673148 -145615514 - L2 LINE L2 -9 3304 3264 515 236 42 35 chr4 38674278 38674422 -145614240 - MIR SINE MIR -53 209 65 246 241 0 0 chr4 38676340 38676394 -145612268 - MER91B DNA MER1_type -136 54 1 267 164 127 0 chr4 38676660 38676715 -145611947 - HAL1 LINE L1 -2004 503 442 262 194 16 32 chr4 38676715 38676777 -145611885 + LTR49 LTR ERV1 459 519 -76 761 264 139 11 chr4 38676842 38677122 -145611540 - HAL1 LINE L1 -2107 400 85 1894 122 4 0 chr4 38677133 38677388 -145611274 + AluSx SINE Alu 1 256 -56 22 0 0 0 chr4 38677388 38677410 -145611252 + AT_rich Low_complexity Low_complexity 1 22 0 2168 118 3 0 chr4 38678039 38678328 -145610334 - AluSx SINE Alu -22 290 1 1685 285 93 25 chr4 38678527 38678879 -145609783 - L2 LINE L2 -5 3308 2981 2329 99 0 3 chr4 38678879 38679191 -145609471 + AluSx SINE Alu 1 311 -1 1685 285 93 25 chr4 38679191 38679788 -145608874 - L2 LINE L2 -332 2981 2268 1911 146 9 44 chr4 38679791 38680112 -145608550 + AluSx SINE Alu 1 310 -2 2350 179 179 0 chr4 38680163 38680611 -145608051 + MLT1A1-int LTR MaLR 1208 1735 0 774 167 35 14 chr4 38680611 38680755 -145607907 + MLT1A1 LTR MaLR 1 147 -218 2109 138 0 13 chr4 38681568 38681879 -145606783 - AluSx SINE Alu -5 307 1 312 27 0 0 chr4 38682824 38682861 -145605801 + (CCA)n Simple_repeat Simple_repeat 2 38 0 2239 114 7 7 chr4 38682876 38683184 -145605478 - AluSg SINE Alu -2 308 1 2230 116 3 0 chr4 38683733 38684034 -145604628 + AluSg SINE Alu 1 302 -8 210 209 0 0 chr4 38684302 38684345 -145604317 - L2 LINE L2 -216 3056 3014 315 214 351 15 chr4 38684425 38684556 -145604106 - MER5A DNA MER1_type -6 183 9 2379 59 0 3 chr4 38684923 38685211 -145603451 + AluY SINE Alu 1 309 0 199 0 0 0 chr4 38685211 38685233 -145603429 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 503 293 129 24 chr4 38685934 38686268 -145602394 - L2 LINE L2 -18 3295 2927 860 203 127 38 chr4 38686376 38686613 -145602049 + MIR SINE MIR 5 262 0 205 280 13 13 chr4 38686814 38686889 -145601773 + L2 LINE L2 2440 2514 -800 2200 102 0 3 chr4 38686915 38687228 -145601434 - AluSx SINE Alu 0 312 1 1479 216 90 29 chr4 38687451 38687938 -145600724 - LTR33A LTR ERVL 0 523 7 4324 85 2 0 chr4 38687953 38688506 -145600156 + MER41A LTR ERV1 1 554 0 23 0 0 0 chr4 38689319 38689342 -145599320 + AT_rich Low_complexity Low_complexity 1 23 0 783 292 16 20 chr4 38689588 38689893 -145598769 + L1ME4a LINE L1 5546 5849 -272 249 167 0 0 chr4 38689939 38689975 -145598687 + Alu SINE Alu 136 171 -131 1332 167 4 43 chr4 38689975 38690087 -145598575 + 7SLRNA srpRNA srpRNA 75 175 -145 2324 108 0 0 chr4 38690087 38690393 -145598269 + AluSg SINE Alu 1 306 -4 1332 167 4 43 chr4 38690393 38690513 -145598149 + 7SLRNA srpRNA srpRNA 175 298 -22 319 241 0 27 chr4 38690527 38690602 -145598060 + L1ME4a LINE L1 5985 6058 -63 751 158 47 8 chr4 38690602 38690729 -145597933 - FLAM_A SINE Alu -1 132 1 319 241 0 27 chr4 38690729 38690765 -145597897 + L1ME4a LINE L1 6058 6093 -28 309 179 150 29 chr4 38690831 38690847 -145597815 - L1MA10 LINE L1 0 6334 6319 2013 215 111 46 chr4 38690847 38691541 -145597121 - L1ME1 LINE L1 -5 6161 5423 2030 150 73 51 chr4 38691541 38691593 -145597069 + LOR1b LTR ERV1 1 50 -411 848 173 0 0 chr4 38691593 38691726 -145596936 - FLAM_C SINE Alu 0 133 1 2030 150 73 51 chr4 38691726 38692086 -145596576 + LOR1b LTR ERV1 50 422 -39 1443 189 44 19 chr4 38692088 38692482 -145596180 - L1ME1 LINE L1 -752 5394 5016 443 197 111 0 chr4 38692475 38692592 -145596070 - L1M4 LINE L1 -890 5256 5127 * 613 178 11 38 chr4 38692646 38692831 -145595831 + CT-rich Low_complexity Low_complexity 1 180 0 1137 121 17 6 chr4 38694072 38694245 -145594417 + AluSg/x SINE Alu 127 301 -9 2129 181 27 74 chr4 38694552 38694952 -145593710 + L1MB8 LINE L1 5674 6045 -133 2162 110 0 0 chr4 38694952 38695243 -145593419 + AluSx SINE Alu 14 304 -8 2129 181 27 74 chr4 38695243 38695366 -145593296 + L1MB8 LINE L1 6045 6172 -6 777 209 17 6 chr4 38695479 38695651 -145593011 + MER96 DNA MER1_type 2 175 0 181 271 0 68 chr4 38695897 38695956 -145592706 - MIR SINE MIR -179 83 29 180 211 90 115 chr4 38696719 38696875 -145591787 + MER5B DNA MER1_type 8 159 -19 297 239 261 0 chr4 38697991 38698121 -145590541 + MER5A DNA MER1_type 26 189 0 6310 84 8 0 chr4 38698323 38699151 -145589511 + L1PA10 LINE L1 5334 6168 0 475 306 73 13 chr4 38700975 38701207 -145587455 + MIR SINE MIR 17 262 0 213 245 71 52 chr4 38701529 38701684 -145586978 - L2 LINE L2 -308 3005 2848 218 339 142 0 chr4 38701837 38701964 -145586698 + L3 LINE CR1 618 762 -815 1793 167 4 0 chr4 38702060 38702341 -145586321 - AluJo SINE Alu -30 282 1 431 162 0 14 chr4 38702874 38702948 -145585714 + MER6 DNA MER2_type 793 865 0 260 310 9 18 chr4 38704144 38704257 -145584405 + MARNA DNA Mariner 284 395 -191 22 35 0 0 chr4 38705489 38705518 -145583144 + AT_rich Low_complexity Low_complexity 1 29 0 745 268 51 0 chr4 38705523 38705758 -145582904 - MIR SINE MIR -10 252 6 412 282 144 17 chr4 38705832 38706013 -145582649 - MIR SINE MIR -27 235 32 666 298 31 4 chr4 38706268 38706493 -145582169 + MIR SINE MIR 18 248 -14 234 331 24 39 chr4 38706560 38706687 -145581975 + L2 LINE L2 3188 3312 -1 2348 111 0 13 chr4 38707269 38707585 -145581077 - AluSx SINE Alu 0 312 1 597 260 83 0 chr4 38708011 38708192 -145580470 - MIR SINE MIR -14 248 54 239 298 262 0 chr4 38708238 38708379 -145580283 - MER5A DNA MER1_type -2 187 10 642 199 194 52 chr4 38708683 38708874 -145579788 - MER20 DNA MER1_type -1 218 1 2528 60 10 0 chr4 38710911 38711210 -145577452 + AluY SINE Alu 1 302 -9 684 306 55 4 chr4 38711389 38711624 -145577038 + MIR SINE MIR 16 262 0 307 238 0 38 chr4 38712987 38713067 -145575595 - MIR3 SINE MIR -24 184 108 303 264 101 8 chr4 38713075 38713204 -145575458 - MIR SINE MIR -11 251 111 484 237 48 38 chr4 38713306 38713492 -145575170 + MIR SINE MIR 58 245 -17 798 188 47 18 chr4 38715031 38715201 -145573461 + MER5A DNA MER1_type 6 180 -9 2027 125 3 14 chr4 38715405 38715702 -145572960 - AluSq SINE Alu -19 294 1 1703 171 35 49 chr4 38716343 38716711 -145571951 - MLT1A2 LTR MaLR -11 363 1 22 0 0 0 chr4 38717496 38717518 -145571144 + AT_rich Low_complexity Low_complexity 1 22 0 2628 85 33 3 chr4 38718735 38719099 -145569563 + THE1C LTR MaLR 1 375 0 2284 102 3 0 chr4 38720085 38720379 -145568283 + AluSg SINE Alu 1 295 -15 235 346 90 8 chr4 38721415 38721548 -145567114 - MIR SINE MIR -93 169 26 891 173 31 45 chr4 38721548 38721773 -145566889 + L1MB2 LINE L1 5286 5474 -706 3653 149 31 16 chr4 38721855 38722532 -145566130 + L1MB2 LINE L1 5483 6169 -2 3732 171 33 14 chr4 38724015 38724709 -145563953 + MER50 LTR ERV1 2 708 -26 253 95 0 0 chr4 38725525 38725567 -145563095 + Alu SINE Alu 259 300 -2 303 93 0 0 chr4 38725688 38725731 -145562931 + (CA)n Simple_repeat Simple_repeat 2 44 0 799 204 26 0 chr4 38726253 38726405 -145562257 - FRAM SINE Alu -9 157 2 196 277 252 8 chr4 38727449 38727568 -145561094 - MIR3 SINE MIR -7 201 54 182 231 110 55 chr4 38728793 38728884 -145559778 + MIR SINE MIR 65 160 -102 21 36 0 0 chr4 38729135 38729163 -145559499 + AT_rich Low_complexity Low_complexity 1 28 0 803 147 28 7 chr4 38730317 38730460 -145558202 + L1PB4 LINE L1 6008 6153 -3 22 0 0 0 chr4 38730532 38730554 -145558108 + AT_rich Low_complexity Low_complexity 1 22 0 2236 80 0 27 chr4 38730568 38730868 -145557794 - AluY SINE Alu -19 292 1 21 0 0 0 chr4 38731295 38731316 -145557346 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 38731632 38731653 -145557009 + AT_rich Low_complexity Low_complexity 1 21 0 1063 203 48 0 chr4 38731865 38732072 -145556590 - MER58A DNA MER1_type -6 218 2 217 237 194 43 chr4 38734720 38734859 -145553803 + MIR3 SINE MIR 25 184 -24 3641 187 81 14 chr4 38735600 38736369 -145552293 + L1MC1 LINE L1 5514 6333 0 242 234 50 106 chr4 38736851 38736876 -145551786 - MARNA DNA Mariner -211 375 350 2361 89 0 22 chr4 38736876 38737192 -145551470 - AluY SINE Alu -2 309 1 242 234 50 106 chr4 38737192 38737307 -145551355 - MARNA DNA Mariner -236 350 243 646 289 53 19 chr4 38737319 38737407 -145551255 + L1ME3A LINE L1 5943 6027 -143 2144 120 0 13 chr4 38737407 38737708 -145550954 - AluSx SINE Alu -15 297 1 646 289 53 19 chr4 38737708 38737827 -145550835 + L1ME3A LINE L1 6027 6157 -13 225 200 20 20 chr4 38737953 38738003 -145550659 + Alu SINE Alu 2 51 -269 1000 210 0 0 chr4 38738126 38738293 -145550369 + FAM SINE Alu 1 167 -8 249 241 52 0 chr4 38738343 38738401 -145550261 + MARNA DNA Mariner 454 514 -72 2072 122 0 7 chr4 38740251 38740547 -145548115 + AluSg SINE Alu 1 294 -16 1248 85 50 50 chr4 38741380 38741454 -145547208 - MER30 DNA MER1_type -31 199 126 2233 104 7 0 chr4 38741454 38741753 -145546909 + AluSg SINE Alu 1 301 -9 1248 85 50 50 chr4 38741753 38741780 -145546882 - MER30 DNA MER1_type -104 126 100 213 65 0 0 chr4 38741780 38741811 -145546851 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1248 85 50 50 chr4 38741811 38741907 -145546755 - MER30 DNA MER1_type -129 101 1 1871 148 0 42 chr4 38742266 38742576 -145546086 - AluJb SINE Alu -14 298 2 451 272 75 14 chr4 38742617 38742764 -145545898 - MIR SINE MIR -9 253 98 266 262 0 0 chr4 38743469 38743530 -145545132 - MIR SINE MIR -61 147 87 292 291 85 45 chr4 38743733 38743932 -145544730 - MIR SINE MIR -6 256 50 301 335 45 45 chr4 38744144 38744389 -145544273 + L2 LINE L2 1761 2005 -1309 210 333 0 0 chr4 38744478 38744532 -145544130 + L2 LINE L2 3194 3247 -25 3090 72 3 0 chr4 38745025 38745388 -145543274 + THE1B LTR MaLR 1 364 0 2138 123 30 0 chr4 38745891 38746191 -145542471 - AluSq SINE Alu -4 309 1 25 0 0 0 chr4 38746484 38746509 -145542153 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr4 38746639 38746661 -145542001 + AT_rich Low_complexity Low_complexity 1 22 0 304 339 151 0 chr4 38749391 38749609 -145539053 + L2 LINE L2 2563 2813 -501 286 292 124 72 chr4 38749715 38750006 -145538656 - L2 LINE L2 -50 3263 2958 540 328 160 9 chr4 38750220 38750558 -145538104 + L2 LINE L2 2922 3310 -3 2251 86 7 3 chr4 38753475 38753767 -145534895 + AluSg SINE Alu 1 293 -17 1653 176 33 0 chr4 38753993 38754294 -145534368 + AluJo SINE Alu 1 311 -1 2428 93 0 3 chr4 38755185 38755498 -145533164 - AluSp SINE Alu -1 312 1 327 353 58 43 chr4 38755713 38756112 -145532550 - L2 LINE L2 -666 2648 2244 345 283 52 58 chr4 38758694 38758867 -145529795 + MER5B DNA MER1_type 1 172 -6 2193 109 0 0 chr4 38759240 38759524 -145529138 + AluSx SINE Alu 5 288 -24 206 81 27 0 chr4 38759531 38759568 -145529094 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 2227 109 0 10 chr4 38760010 38760314 -145528348 + AluSc SINE Alu 1 301 -8 252 311 74 82 chr4 38762567 38762920 -145525742 + L2 LINE L2 2634 2981 -291 186 263 71 20 chr4 38762918 38763017 -145525645 - MIR3 SINE MIR -27 181 78 * 1338 127 122 0 chr4 38764371 38764576 -145524086 + MER30 DNA MER1_type 1 230 0 309 361 42 42 chr4 38764736 38764927 -145523735 - L3b LINE CR1 -23 1560 1370 195 269 59 59 chr4 38764935 38765054 -145523608 - MIR3 SINE MIR -23 185 67 4990 141 77 26 chr4 38765211 38766070 -145522592 - MER4D LTR ERV1 0 903 1 348 291 8 31 chr4 38766117 38766244 -145522418 + MIR3 SINE MIR 85 208 0 264 301 171 36 chr4 38766249 38766442 -145522220 - MIR SINE MIR -16 246 28 353 310 53 0 chr4 38766494 38766607 -145522055 - MIR3 SINE MIR -3 205 87 273 243 105 116 chr4 38767433 38767614 -145521048 + MIR SINE MIR 73 251 -11 2000 113 48 0 chr4 38768069 38768360 -145520302 + AluSx SINE Alu 1 305 -7 346 207 12 61 chr4 38768500 38768582 -145520080 + MIR SINE MIR 64 141 -67 252 111 0 0 chr4 38769017 38769053 -145519609 + MIR SINE MIR 198 233 -29 315 175 29 126 chr4 38769476 38769579 -145519083 + MLT1H LTR MaLR 457 549 0 2211 112 0 7 chr4 38769645 38769939 -145518723 + AluSx SINE Alu 1 292 -20 9592 218 61 43 chr4 38770682 38770993 -145517669 + L1ME1 LINE L1 2355 2659 -3507 2142 126 10 3 chr4 38770993 38771302 -145517360 - AluSq SINE Alu -2 311 1 9592 218 61 43 chr4 38771302 38773224 -145515438 + L1ME1 LINE L1 2659 4546 -1620 2220 96 20 0 chr4 38773224 38773527 -145515135 - AluY SINE Alu -2 309 1 1878 157 28 0 chr4 38773529 38773815 -145514847 - AluJb SINE Alu -18 294 1 9592 218 61 43 chr4 38773815 38774807 -145513855 + L1ME1 LINE L1 4546 5673 -493 2288 82 0 0 chr4 38774807 38775119 -145513543 - AluY SINE Alu 0 312 1 9592 218 61 43 chr4 38775119 38775567 -145513095 + L1ME1 LINE L1 5673 6112 -54 1825 146 7 4 chr4 38775574 38775854 -145512808 - AluJb SINE Alu -18 294 14 2226 151 43 3 chr4 38775980 38776332 -145512330 - MER47A DNA MER2_type 0 366 1 307 281 144 36 chr4 38776375 38776484 -145512178 + MIR3 SINE MIR 17 152 -56 1810 163 123 6 chr4 38776484 38776810 -145511852 - MLT1A1 LTR MaLR -1 364 1 307 281 144 36 chr4 38776810 38776867 -145511795 + MIR3 SINE MIR 152 201 -7 315 260 110 16 chr4 38776937 38777064 -145511598 - MIR SINE MIR -45 217 79 365 282 43 0 chr4 38777379 38777496 -145511166 - MIR SINE MIR -35 227 106 235 290 0 0 chr4 38777583 38777611 -145511051 + GA-rich Low_complexity Low_complexity 3 30 -41 2333 92 0 7 chr4 38777611 38777917 -145510745 + AluSg SINE Alu 1 304 -6 235 290 0 0 chr4 38777917 38777957 -145510705 + GA-rich Low_complexity Low_complexity 29 71 0 701 101 44 8 chr4 38778135 38778383 -145510279 + (CA)n Simple_repeat Simple_repeat 1 257 0 830 67 34 22 chr4 38778403 38778581 -145510081 + (CA)n Simple_repeat Simple_repeat 1 180 0 249 109 0 0 chr4 38778861 38778907 -145509755 + (TC)n Simple_repeat Simple_repeat 2 47 0 229 292 130 11 chr4 38779087 38779250 -145509412 + MIR SINE MIR 40 226 -36 392 253 21 79 chr4 38779933 38780123 -145508539 - L2 LINE L2 -598 2716 2538 1999 123 27 20 chr4 38780166 38780467 -145508195 - AluSq SINE Alu -9 304 2 457 222 17 8 chr4 38780520 38780637 -145508025 + L1MB2 LINE L1 4132 4249 -1897 1366 240 10 30 chr4 38830787 38831222 -145457440 + L1MB2 LINE L1 5511 5912 -259 2077 153 106 22 chr4 38831224 38831430 -145457232 + L1MA9 LINE L1 5431 5618 -694 245 27 54 0 chr4 38831430 38831467 -145457195 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 2077 153 106 22 chr4 38831467 38831664 -145456998 + L1MA9 LINE L1 5618 5868 -444 1827 118 14 0 chr4 38831701 38831980 -145456682 + AluSx SINE Alu 1 283 -29 1000 165 69 58 chr4 38832087 38832348 -145456314 - pTR5 LTR ERV1 -1432 1006 743 1647 86 108 4 chr4 38832348 38832580 -145456082 - LTR12 LTR ERV1 -406 308 53 250 269 0 0 chr4 38832580 38832632 -145456030 - LTR30 LTR ERV1 -670 52 1 189 391 75 23 chr4 38832991 38833124 -145455538 - L2 LINE L2 -1 3271 3132 213 313 0 25 chr4 38833437 38833517 -145455145 - MIR SINE MIR -12 250 173 3116 110 221 132 chr4 38833703 38835004 -145453658 + pTR5 LTR ERV1 1167 2438 0 659 242 82 10 chr4 38835831 38836025 -145452637 - MIR SINE MIR -25 237 30 732 176 6 16 chr4 38836342 38836524 -145452138 + CT-rich Low_complexity Low_complexity 1 180 0 424 278 11 56 chr4 38839799 38839979 -145448683 - MIR SINE MIR -60 202 31 190 257 81 27 chr4 38840733 38840807 -145447855 + L2 LINE L2 3190 3267 -46 1886 119 3 35 chr4 38841766 38842051 -145446611 + AluSx SINE Alu 1 276 -36 189 0 0 0 chr4 38842055 38842076 -145446586 + (GAAA)n Simple_repeat Simple_repeat 2 22 0 564 262 13 13 chr4 38842204 38842353 -145446309 + MIR SINE MIR 13 161 -101 201 121 0 0 chr4 38842417 38842450 -145446212 + (ATGGTG)n Simple_repeat Simple_repeat 1 33 0 390 208 14 0 chr4 38842537 38842609 -145446053 + MER5A DNA MER1_type 115 187 -2 1353 245 80 47 chr4 38843102 38843592 -145445070 - MLT1J LTR MaLR -5 506 1 600 214 54 36 chr4 38843593 38843761 -145444901 - MIR SINE MIR -61 201 31 430 115 29 29 chr4 38844626 38844730 -145443932 + CT-rich Low_complexity Low_complexity 3 106 0 432 67 0 0 chr4 38844777 38844837 -145443825 + (TG)n Simple_repeat Simple_repeat 2 61 0 263 65 0 0 chr4 38844839 38844870 -145443792 - U2 snRNA snRNA -152 36 6 183 80 0 0 chr4 38845494 38845519 -145443143 + (TCC)n Simple_repeat Simple_repeat 3 27 0 688 169 22 0 chr4 38846475 38846628 -145442034 - L1PA12 LINE L1 -95 6073 5918 444 19 0 0 chr4 38847663 38847716 -145440946 + (TG)n Simple_repeat Simple_repeat 2 54 0 2028 110 11 0 chr4 38847716 38847989 -145440673 - AluSx SINE Alu -27 285 10 3636 139 22 17 chr4 38848396 38848529 -145440133 + L1MB3 LINE L1 5585 5716 -467 2536 155 46 10 chr4 38848529 38848942 -145439720 - MSTA LTR MaLR 0 428 1 3636 139 22 17 chr4 38848942 38849397 -145439265 + L1MB3 LINE L1 5716 6176 -7 821 247 158 41 chr4 38849530 38849872 -145438790 - MLT1J1 LTR MaLR -15 431 17 4110 91 16 44 chr4 38850355 38850479 -145438183 - MER41A LTR ERV1 0 554 428 1775 87 14 79 chr4 38850479 38850756 -145437906 + AluSx SINE Alu 35 293 -19 4110 91 16 44 chr4 38850756 38851201 -145437461 - MER41A LTR ERV1 -126 428 1 225 336 9 19 chr4 38851329 38851436 -145437226 - MIR SINE MIR -63 145 40 254 258 113 57 chr4 38851653 38851901 -145436761 - L1MC4a LINE L1 -1639 6169 5908 1859 166 17 84 chr4 38852396 38852786 -145435876 - MLT1B LTR MaLR -1 389 27 2148 104 10 0 chr4 38852786 38853075 -145435587 - AluSq SINE Alu -1 312 21 1859 166 17 84 chr4 38853075 38853101 -145435561 - MLT1B LTR MaLR -363 27 1 216 0 0 0 chr4 38855627 38855651 -145433011 + (A)n Simple_repeat Simple_repeat 1 24 0 295 272 104 58 chr4 38855894 38856067 -145432595 + MIR3 SINE MIR 28 208 0 219 332 111 46 chr4 38856948 38857157 -145431505 + L2 LINE L2 2184 2415 -899 1349 216 95 43 chr4 38857157 38857504 -145431158 + MLT1A1 LTR MaLR 1 365 0 219 332 111 46 chr4 38857504 38857556 -145431106 + L2 LINE L2 2415 2462 -852 209 200 0 0 chr4 38857726 38857766 -145430896 - L2 LINE L2 -1 3312 3273 1030 228 24 5 chr4 38858312 38858523 -145430139 + MER58A DNA MER1_type 10 224 0 457 304 17 21 chr4 38858531 38858696 -145429966 - MIR SINE MIR -25 183 10 251 313 54 18 chr4 38858929 38859041 -145429621 + L2 LINE L2 3185 3300 -13 570 299 112 23 chr4 38859137 38859351 -145429311 + MIR SINE MIR 30 262 0 8457 205 8 19 chr4 38861403 38863240 -145425422 - L1P LINE L1 -1022 5124 3309 4863 212 7 1 chr4 38863239 38864244 -145424418 - L1PA15-16 LINE L1 -4040 2809 1799 * 1804 312 12 14 chr4 38864253 38864811 -145423851 - L1PA15-16 LINE L1 -6230 609 53 313 192 0 68 chr4 38864823 38864896 -145423766 - MLT1C LTR MaLR -346 121 54 510 338 82 28 chr4 38865501 38865889 -145422773 - LTR16C LTR ERVL -2 489 81 1919 158 20 0 chr4 38865923 38866220 -145422442 - AluJb SINE Alu -9 303 1 2346 80 19 15 chr4 38867386 38867710 -145420952 + THE1B LTR MaLR 40 364 0 784 285 75 9 chr4 38867753 38868072 -145420590 - MLT1L LTR MaLR -77 538 199 1004 262 116 46 chr4 38868257 38868585 -145420077 + L1MC5 LINE L1 7270 7574 -387 2103 126 0 10 chr4 38868585 38868886 -145419776 + AluSx SINE Alu 1 298 -14 1004 262 116 46 chr4 38868886 38869163 -145419499 + L1MC5 LINE L1 7574 7917 -44 2251 125 35 37 chr4 38869218 38869594 -145419068 - THE1C LTR MaLR 0 375 1 235 364 108 16 chr4 38869835 38869964 -145418698 - LTR67 LTR ERVL -313 244 104 327 280 10 10 chr4 38870117 38870217 -145418445 - MLT1L LTR MaLR -483 132 33 623 177 24 6 chr4 38870418 38870582 -145418080 + CT-rich Low_complexity Low_complexity 2 168 0 1997 111 64 77 chr4 38872289 38872666 -145415996 - Tigger2 DNA MER2_type 0 2718 2347 672 211 0 0 chr4 38872665 38872793 -145415869 - Tigger2 DNA MER2_type -2590 128 1 * 1118 238 44 47 chr4 38873039 38873422 -145415240 - L1M4 LINE L1 -866 5280 4899 1104 301 48 15 chr4 38873442 38873903 -145414759 - L1MEc LINE L1 -5885 511 36 43919 46 5 2 chr4 38874078 38880213 -145408449 - L1PA4 LINE L1 0 6155 1 668 75 25 108 chr4 38880344 38880421 -145408241 - L1PA13 LINE L1 -11 6152 6087 2276 105 3 7 chr4 38880421 38880727 -145407935 - AluSx SINE Alu -7 305 1 668 75 25 108 chr4 38880727 38880769 -145407893 - L1PA13 LINE L1 -76 6087 6043 7289 221 58 25 chr4 38880874 38881577 -145407085 - L1M4 LINE L1 -1603 4543 3865 2073 92 28 0 chr4 38881577 38881860 -145406802 - AluY SINE Alu -20 291 1 7289 221 58 25 chr4 38881860 38883181 -145405481 - L1M4 LINE L1 -2281 3865 2452 778 250 65 13 chr4 38883179 38883521 -145405141 - L1ME LINE L1 -686 5476 5119 * 387 105 0 0 chr4 38883571 38883628 -145405034 + (TG)n Simple_repeat Simple_repeat 2 58 0 1054 169 107 111 chr4 38883632 38884018 -145404644 - MLT2B1 LTR ERVL -40 480 1 840 224 10 15 chr4 38884083 38884279 -145404383 - L1ME LINE L1 -1217 4929 4735 1874 211 46 95 chr4 38884303 38884863 -145403799 - MLT1F LTR MaLR -9 533 1 299 276 0 0 chr4 38884863 38884939 -145403723 - L1ME LINE L1 -1407 4739 4664 909 209 16 0 chr4 38884949 38885009 -145403653 - AluJo SINE Alu 0 456 398 429 135 34 0 chr4 38885009 38885098 -145403564 + CT-rich Low_complexity Low_complexity 3 94 0 909 209 16 0 chr4 38885098 38885281 -145403381 - AluJo SINE Alu -58 398 122 1242 254 82 11 chr4 38885281 38885746 -145402916 - L1ME LINE L1 -1491 4655 4158 993 196 38 5 chr4 38885746 38885930 -145402732 - MER58A DNA MER1_type -8 216 27 1035 273 60 24 chr4 38885940 38886273 -145402389 + L1MC4 LINE L1 7557 7901 -141 245 281 0 31 chr4 38886808 38886872 -145401790 - L3 LINE CR1 -2 1575 1514 780 151 17 0 chr4 38886902 38887021 -145401641 - AluJo SINE Alu -181 121 1 662 127 37 124 chr4 38887029 38887207 -145401455 - L1M3 LINE L1 -571 5600 5428 2048 208 30 40 chr4 38887218 38887690 -145400972 + MLT1C LTR MaLR 1 467 0 319 282 0 0 chr4 38887827 38887898 -145400764 - L2 LINE L2 -4 3309 3239 2228 101 3 0 chr4 38888705 38889002 -145399660 + AluSg SINE Alu 12 309 -1 332 218 11 0 chr4 38889176 38889263 -145399399 + GA-rich Low_complexity Low_complexity 4 91 0 236 214 0 18 chr4 38889887 38889943 -145398719 + U8 snRNA snRNA 22 76 -60 313 284 116 7 chr4 38889983 38890138 -145398524 + MIR SINE MIR 70 241 -21 253 355 40 24 chr4 38890251 38890375 -145398287 - MIR SINE MIR -133 129 4 1585 224 176 10 chr4 38890401 38890963 -145397699 - LTR50 LTR ERVL -2 793 87 215 348 96 15 chr4 38891125 38891260 -145397402 + L2 LINE L2 3127 3272 0 320 279 23 23 chr4 38891772 38891858 -145396804 - MIR3 SINE MIR -19 189 104 2238 115 0 0 chr4 38891960 38892255 -145396407 - AluSx SINE Alu -17 295 1 22 0 0 0 chr4 38892348 38892370 -145396292 + AT_rich Low_complexity Low_complexity 1 22 0 584 279 81 34 chr4 38893197 38893520 -145395142 - L1ME LINE L1 -399 5722 5385 250 276 184 20 chr4 38893525 38893623 -145395039 + L2 LINE L2 3195 3308 -5 191 378 0 0 chr4 38893854 38893928 -145394734 + MIR SINE MIR 49 122 -140 219 228 18 0 chr4 38895622 38895672 -145392990 + (CA)n Simple_repeat Simple_repeat 1 54 -4 2604 152 21 39 chr4 38895672 38895725 -145392937 + MSTC LTR MaLR 3 55 -373 2318 89 3 13 chr4 38895725 38896039 -145392623 + AluY SINE Alu 1 311 0 2604 152 21 39 chr4 38896039 38896419 -145392243 + MSTC LTR MaLR 55 428 0 219 228 18 0 chr4 38896419 38896425 -145392237 + (CA)n Simple_repeat Simple_repeat 54 58 0 189 338 8 113 chr4 38896579 38896641 -145392021 - MIR SINE MIR -141 121 79 1669 145 0 0 chr4 38896641 38896883 -145391779 - AluJb SINE Alu -22 290 49 189 338 8 113 chr4 38896883 38896953 -145391709 - MIR SINE MIR -183 79 3 1623 239 77 78 chr4 38897235 38897667 -145390995 + L1ME2 LINE L1 3226 3658 -2488 1815 151 7 26 chr4 38897667 38897972 -145390690 + AluJb SINE Alu 1 299 -13 1623 239 77 78 chr4 38897972 38898402 -145390260 + L1ME2 LINE L1 3658 4087 -2059 767 142 49 120 chr4 38898405 38898552 -145390110 - AluSg/x SINE Alu -22 290 157 4850 160 64 60 chr4 38898552 38899619 -145389043 - MER11C LTR ERVK 0 1071 1 767 142 49 120 chr4 38899619 38899654 -145389008 - AluSg/x SINE Alu -155 157 121 851 141 7 30 chr4 38899655 38899790 -145388872 - FLAM_C SINE Alu 0 133 2 2249 242 46 36 chr4 38899810 38900619 -145388043 + L1ME2 LINE L1 4112 4928 -1218 245 217 72 105 chr4 38900636 38900788 -145387874 + L1ME2 LINE L1 5160 5306 -840 1976 67 0 52 chr4 38900788 38901058 -145387604 + MER1A DNA MER1_type 136 391 -138 298 71 0 0 chr4 38901055 38901097 -145387565 - Charlie3 DNA MER1_type -92 2618 2577 * 269 105 26 0 chr4 38901105 38901143 -145387519 + Charlie3 DNA MER1_type 2664 2702 -8 1832 196 36 60 chr4 38901153 38901657 -145387005 + L1ME2 LINE L1 5650 6141 -23 1567 116 0 0 chr4 38902107 38902314 -145386348 - AluSg/x SINE Alu -12 298 92 266 236 42 29 chr4 38902876 38902981 -145385681 - MIR SINE MIR -71 137 43 856 149 0 154 chr4 38903365 38903573 -145385089 + MER5B DNA MER1_type 2 177 -1 321 297 7 11 chr4 38903629 38903769 -145384893 - MIR SINE MIR -48 214 19 189 229 229 0 chr4 38903808 38903869 -145384793 + MIR SINE MIR 165 239 -23 2345 71 10 3 chr4 38904043 38904340 -145384322 - AluY SINE Alu -12 299 1 552 42 0 0 chr4 38904593 38904664 -145383998 + (TCCA)n Simple_repeat Simple_repeat 4 74 0 230 182 18 55 chr4 38904933 38904988 -145383674 - MIR SINE MIR -189 73 21 318 252 34 5 chr4 38905258 38905403 -145383259 - MIR SINE MIR -17 245 21 2584 138 59 5 chr4 38905580 38905986 -145382676 - MSTA LTR MaLR 0 428 1 9707 165 43 11 chr4 38905986 38906173 -145382489 - MSTA-int LTR MaLR 0 1651 1471 2151 122 0 13 chr4 38906173 38906477 -145382185 + AluSg SINE Alu 1 300 -10 9707 165 43 11 chr4 38906477 38907889 -145380773 - MSTA-int LTR MaLR -180 1471 1 2657 150 41 5 chr4 38907889 38908302 -145380360 - MSTA LTR MaLR 0 428 1 483 275 67 96 chr4 38908411 38908609 -145380053 - MLT1J1 LTR MaLR 0 446 244 2204 145 85 18 chr4 38908609 38909010 -145379652 - MSTA LTR MaLR 0 428 1 483 275 67 96 chr4 38909010 38909229 -145379433 - MLT1J1 LTR MaLR -202 244 41 248 315 33 0 chr4 38909397 38909489 -145379173 - MIR SINE MIR 0 262 168 621 288 7 0 chr4 38909580 38909719 -145378943 + LTR33 LTR ERVL 26 165 -356 505 302 31 9 chr4 38909794 38910019 -145378643 + LTR33 LTR ERVL 292 521 0 440 256 130 72 chr4 38910094 38910301 -145378361 + MIR SINE MIR 30 248 -14 2363 111 60 20 chr4 38910336 38910686 -145377976 + THE1B LTR MaLR 1 364 0 22 35 0 0 chr4 38910695 38910724 -145377938 + AT_rich Low_complexity Low_complexity 1 29 0 904 254 61 20 chr4 38910763 38911058 -145377604 + L1ME4a LINE L1 5490 5796 -325 375 281 125 27 chr4 38911079 38911303 -145377359 + L1ME4a LINE L1 5847 6092 -29 957 81 16 0 chr4 38911663 38911786 -145376876 + AluSg/x SINE Alu 174 298 -12 188 301 41 14 chr4 38912247 38912320 -145376342 + MIR SINE MIR 34 108 -154 3136 219 29 38 chr4 38912422 38913229 -145375433 + L1ME1 LINE L1 5363 6161 -5 201 307 0 34 chr4 38913312 38913400 -145375262 + CT-rich Low_complexity Low_complexity 3 87 0 393 329 79 30 chr4 38913460 38913624 -145375038 + L3 LINE CR1 1362 1533 -44 8149 28 3 0 chr4 38914289 38915403 -145373259 - L1PA3 LINE L1 0 6155 5041 30865 123 10 55 chr4 38915436 38921911 -145366751 + L1PA8 LINE L1 2 6171 -1 522 251 29 82 chr4 38921960 38921996 -145366666 - MIR SINE MIR -10 252 216 1776 175 11 118 chr4 38921996 38922460 -145366202 + MLT2D LTR ERVL 1 414 0 522 251 29 82 chr4 38922460 38922630 -145366032 - MIR SINE MIR -46 216 57 271 261 102 64 chr4 38922773 38922930 -145365732 + MIR SINE MIR 28 190 -72 1520 183 95 9 chr4 38923097 38923414 -145365248 - MLT1B LTR MaLR 0 390 47 198 267 100 0 chr4 38923704 38923764 -145364898 - L2 LINE L2 -228 3044 2979 543 240 8 0 chr4 38924171 38924292 -145364370 + Charlie8 DNA MER1_type 103 224 -2193 783 243 85 0 chr4 38924307 38924496 -145364166 - MER3 DNA MER1_type -4 205 1 237 33 0 0 chr4 38924692 38924722 -145363940 + (TG)n Simple_repeat Simple_repeat 2 31 0 327 78 0 0 chr4 38925167 38925218 -145363444 + (CA)n Simple_repeat Simple_repeat 2 52 0 214 280 93 5 chr4 38925867 38925990 -145362672 + MIR SINE MIR 19 160 -48 533 151 0 0 chr4 38926099 38926172 -145362490 + AluJ/FLAM SINE Alu 2 74 -238 261 0 0 0 chr4 38926195 38926224 -145362438 + (GAA)n Simple_repeat Simple_repeat 2 30 0 264 59 0 0 chr4 38926300 38926334 -145362328 + (A)n Simple_repeat Simple_repeat 1 34 0 264 256 12 37 chr4 38926343 38926425 -145362237 - MER5A DNA MER1_type 0 189 110 594 275 82 37 chr4 38926719 38926963 -145361699 + MER112 DNA MER1_type 2 256 0 675 278 9 54 chr4 38927718 38927941 -145360721 + MIR SINE MIR 28 240 -22 197 328 0 17 chr4 38927907 38927965 -145360697 + L2 LINE L2 3212 3268 -4 * 241 324 19 9 chr4 38928656 38928764 -145359898 + (TATG)n Simple_repeat Simple_repeat 4 112 0 1975 72 68 8 chr4 38929431 38929695 -145358967 + AluSp SINE Alu 6 285 -28 792 277 50 4 chr4 38929909 38930151 -145358511 + MIR SINE MIR 10 262 0 2375 145 45 5 chr4 38930182 38930582 -145358080 - MSTA LTR MaLR -1 427 12 224 170 21 0 chr4 38930583 38930630 -145358032 + (TTA)n Simple_repeat Simple_repeat 3 50 0 1127 191 30 0 chr4 38930931 38931130 -145357532 - MER3 DNA MER1_type -4 205 1 634 272 6 12 chr4 38931444 38931617 -145357045 + MER112 DNA MER1_type 4 175 -85 2317 136 19 32 chr4 38931656 38932025 -145356637 - THE1B LTR MaLR 0 364 1 12574 88 11 1 chr4 38932025 38933590 -145355072 - THE1B-int LTR MaLR 0 1580 1 2547 106 19 32 chr4 38933590 38933959 -145354703 - THE1B LTR MaLR 0 364 1 298 176 81 27 chr4 38933959 38934033 -145354629 + MER112 DNA MER1_type 183 260 0 879 264 63 21 chr4 38934037 38934321 -145354341 - MER102a DNA MER1_type -2 328 33 519 169 8 85 chr4 38934934 38935064 -145353598 - L1MD3 LINE L1 0 7995 7876 1041 218 0 36 chr4 38935066 38935286 -145353376 - MSTD LTR MaLR -1 395 184 2176 126 0 0 chr4 38935286 38935596 -145353066 - AluY SINE Alu -1 310 1 865 166 0 21 chr4 38935599 38935744 -145352918 - AluJo SINE Alu -170 142 1 1118 152 27 0 chr4 38935745 38935929 -145352733 - MSTD LTR MaLR -205 191 3 657 192 26 51 chr4 38935931 38936087 -145352575 - L1MD3 LINE L1 -116 7879 7728 192 308 0 0 chr4 38936310 38936362 -145352300 + L2 LINE L2 3254 3305 -8 2117 184 26 3 chr4 38936502 38936883 -145351779 - MLT1B LTR MaLR 0 390 1 658 314 31 23 chr4 38937316 38937666 -145350996 + MLT1F-int LTR MaLR 248 600 -771 682 290 59 108 chr4 38937873 38938580 -145350082 + MLT1F-int LTR MaLR 699 1371 0 511 291 29 23 chr4 38938581 38938753 -145349909 + MLT1F LTR MaLR 2 174 -368 10629 42 2 13 chr4 38938753 38940250 -145348412 + L1P2 LINE L1 4085 5565 -590 3388 243 38 30 chr4 38940555 38941090 -145347572 - MER21B LTR ERV1 -4 859 313 2255 88 3 36 chr4 38941090 38941395 -145347267 - AluY SINE Alu -16 295 1 3388 243 38 30 chr4 38941395 38941669 -145346993 - MER21B LTR ERV1 -550 313 43 345 291 0 0 chr4 38941667 38941746 -145346916 - MER21B LTR ERV1 -769 94 16 * 261 278 78 33 chr4 38941743 38941833 -145346829 - MER21B LTR ERV1 -758 105 12 * 5489 229 83 51 chr4 38942125 38943786 -145344876 + L1M3e LINE L1 7 1612 -5494 201 39 0 0 chr4 38943786 38943812 -145344850 + (CAA)n Simple_repeat Simple_repeat 1 26 0 5489 229 83 51 chr4 38943812 38945997 -145342665 + L1M3e LINE L1 1612 4783 -2323 1216 243 44 53 chr4 38945997 38946546 -145342116 - MER39 LTR ERV1 0 648 1 2294 181 38 15 chr4 38946546 38947022 -145341640 + L1M3e LINE L1 4780 5266 -1840 410 177 156 10 chr4 38947067 38947163 -145341499 - MER52A LTR ERV1 -743 1012 903 3062 220 173 42 chr4 38947165 38948142 -145340520 - MER52A LTR ERV1 -650 1105 1 2424 120 18 23 chr4 38948142 38948534 -145340128 + L1MA9 LINE L1 5914 6303 -9 5049 109 86 47 chr4 38948863 38949654 -145339008 + LTR12 LTR ERV1 5 826 0 2368 83 0 13 chr4 38949738 38950039 -145338623 - AluY SINE Alu -14 297 1 2155 110 0 38 chr4 38950246 38950563 -145338099 + AluSx SINE Alu 1 305 -7 1364 145 8 2 chr4 38951393 38951649 -145337013 + AluJo SINE Alu 1 300 -12 722 260 12 85 chr4 38952405 38952663 -145335999 - MIR SINE MIR -21 241 3 1853 213 83 120 chr4 38952763 38952972 -145335690 - L1MC5 LINE L1 -61 7900 7685 296 105 0 0 chr4 38952972 38953010 -145335652 - U2 snRNA snRNA -150 38 1 1853 213 83 120 chr4 38953010 38953820 -145334842 - L1MC5 LINE L1 -276 7685 6883 777 253 23 32 chr4 38953989 38954210 -145334452 + MIR SINE MIR 41 259 -3 345 275 57 82 chr4 38954271 38954587 -145334075 - L1ME4a LINE L1 -193 5928 5621 186 133 0 0 chr4 38954864 38954894 -145333768 + (A)n Simple_repeat Simple_repeat 1 30 0 219 300 67 33 chr4 38955077 38955167 -145333495 + MER91A DNA MER1_type 48 140 -56 201 213 49 98 chr4 38955197 38955258 -145333404 + MER91A DNA MER1_type 126 183 -13 314 279 163 58 chr4 38955536 38955726 -145332936 + MIR SINE MIR 5 214 -48 1353 225 64 89 chr4 38956553 38957224 -145331438 + L1MC5 LINE L1 7277 7930 -31 343 296 178 0 chr4 38957286 38957421 -145331241 + MIR SINE MIR 104 262 0 265 267 178 0 chr4 38957876 38957977 -145330685 + MIR SINE MIR 36 154 -108 647 271 168 19 chr4 38957999 38958213 -145330449 + MIR SINE MIR 17 262 0 274 343 29 9 chr4 38959387 38959492 -145329170 + MIR SINE MIR 37 143 -65 186 133 0 0 chr4 38959798 38959828 -145328834 + (T)n Simple_repeat Simple_repeat 1 30 0 626 301 92 19 chr4 38960558 38960764 -145327898 - MIR SINE MIR -9 253 33 732 246 116 54 chr4 38961102 38961525 -145327137 - L1MC4 LINE L1 0 8042 7594 799 267 44 24 chr4 38961834 38962085 -145326577 + MIR SINE MIR 6 261 -1 231 268 49 12 chr4 38962503 38962585 -145326077 - L2 LINE L2 -2 3311 3227 3811 135 25 22 chr4 38962766 38963365 -145325297 + MER7C DNA MER2_type 1 601 -1 1987 123 0 46 chr4 38963431 38963755 -145324907 + AluSx SINE Alu 1 309 -3 480 242 17 0 chr4 38963851 38963971 -145324691 + MIR SINE MIR 105 226 -36 1448 226 33 9 chr4 38964292 38964629 -145324033 + LTR40b LTR ERVL 1 345 -117 195 250 21 0 chr4 38965083 38965131 -145323531 + L2 LINE L2 3201 3249 -23 304 285 139 30 chr4 38965836 38966001 -145322661 - L1ME4a LINE L1 -4 6117 5935 899 161 19 37 chr4 38966158 38966320 -145322342 - FRAM SINE Alu -14 162 4 667 261 16 96 chr4 38966330 38966460 -145322202 - L1ME4a LINE L1 -295 5826 5687 4944 131 7 4 chr4 38966460 38967195 -145321467 + L1PB4 LINE L1 5415 6151 -5 667 261 16 96 chr4 38967195 38967386 -145321276 - L1ME4a LINE L1 -434 5687 5531 960 217 74 57 chr4 38967715 38968128 -145320534 - MLT1E LTR MaLR -17 576 55 2343 64 0 3 chr4 38968128 38968446 -145320216 + AluY SINE Alu 1 317 0 960 217 74 57 chr4 38968446 38968502 -145320160 - MLT1E LTR MaLR -538 55 1 1565 175 113 64 chr4 38970003 38970438 -145318224 - MLT1C LTR MaLR -6 461 6 788 195 0 38 chr4 38972024 38972183 -145316479 + MER3 DNA MER1_type 28 180 -29 1501 167 0 44 chr4 38972183 38972458 -145316204 + AluJo SINE Alu 1 263 -49 244 133 44 0 chr4 38972542 38972587 -145316075 + MER3 DNA MER1_type 163 209 0 195 42 0 0 chr4 38972670 38972694 -145315968 + (TTA)n Simple_repeat Simple_repeat 2 25 0 1677 176 15 4 chr4 38972706 38972978 -145315684 - AluJb SINE Alu -37 275 1 1301 201 88 64 chr4 38972978 38973385 -145315277 - Charlie4a DNA MER1_type -70 438 22 1094 283 164 36 chr4 38973459 38974493 -145314169 - L2 LINE L2 -1 3312 2127 281 253 0 55 chr4 38974735 38974826 -145313836 + LTR67 LTR ERVL 5 90 -467 500 213 55 24 chr4 38974858 38974973 -145313689 + LTR67 LTR ERVL 396 514 -43 712 311 65 34 chr4 38974973 38975356 -145313306 - LTR16A LTR ERVL 0 450 56 198 306 32 0 chr4 38975387 38975449 -145313213 - MIR3 SINE MIR -34 174 111 1467 106 101 5 chr4 38975469 38975676 -145312986 - MER30 DNA MER1_type 0 230 4 2233 128 0 3 chr4 38977867 38978226 -145310436 - AluSx SINE Alu 0 358 1 451 236 113 84 chr4 38978478 38978681 -145309981 - LTR48 LTR ERV1 0 787 387 758 226 132 24 chr4 38978712 38979250 -145309412 - LTR48 LTR ERV1 -36 737 1 337 263 115 32 chr4 38979250 38979406 -145309256 + MIR SINE MIR 52 220 -42 1049 168 6 28 chr4 38979722 38979901 -145308761 - FAM SINE Alu 0 175 1 2708 162 0 36 chr4 38980246 38980685 -145307977 - MSTC LTR MaLR -4 424 2 216 0 0 0 chr4 38980722 38980746 -145307916 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2044 131 0 0 chr4 38980748 38981030 -145307632 - AluSx SINE Alu -30 282 1 258 32 0 0 chr4 38983336 38983367 -145305295 + (TG)n Simple_repeat Simple_repeat 1 31 0 921 225 26 4 chr4 38983406 38983633 -145305029 + MER97a DNA MER1_type? 59 290 -604 922 170 28 142 chr4 38984432 38984578 -145304084 + MER58A DNA MER1_type 1 107 -2313 2267 103 3 3 chr4 38984578 38984878 -145303784 - AluSx SINE Alu -12 300 1 922 170 28 142 chr4 38984878 38984984 -145303678 + MER58A DNA MER1_type 107 224 0 203 184 0 0 chr4 38985377 38985415 -145303247 + A-rich Low_complexity Low_complexity 1 38 0 661 180 189 69 chr4 38985821 38985959 -145302703 + MIR SINE MIR 6 126 -136 1989 107 11 4 chr4 38985959 38986240 -145302422 + AluSx SINE Alu 1 282 -30 235 0 0 0 chr4 38986240 38986266 -145302396 + (TAA)n Simple_repeat Simple_repeat 2 180 0 661 180 189 69 chr4 38986266 38986342 -145302320 + MIR SINE MIR 126 248 -14 189 147 0 0 chr4 38986403 38986437 -145302225 + (CATTA)n Simple_repeat Simple_repeat 5 38 0 912 235 154 10 chr4 38986621 38986932 -145301730 - MLT1C LTR MaLR 0 467 112 4484 138 30 6 chr4 38986935 38987729 -145300933 - L1PA16 LINE L1 -95 6071 5259 35 54 0 0 chr4 39041344 39041400 -145247262 + AT_rich Low_complexity Low_complexity 1 56 0 620 261 63 4 chr4 39041456 39041709 -145246953 + Charlie2 DNA MER1_type 2222 2489 -373 1069 131 0 12 chr4 39041710 39041870 -145246792 + AluSx SINE Alu 1 158 -154 498 114 0 0 chr4 39041871 39041950 -145246712 + AluSc SINE Alu 231 309 0 1302 246 16 8 chr4 39041964 39042338 -145246324 + Charlie2 DNA MER1_type 2486 2862 0 211 256 39 39 chr4 39042360 39042438 -145246224 - MER5B DNA MER1_type -96 82 5 2299 131 56 8 chr4 39042651 39043009 -145245653 + THE1C LTR MaLR 1 375 0 2628 186 15 6 chr4 39043264 39043791 -145244871 + L1 LINE L1 4858 5389 -757 1921 96 4 15 chr4 39043891 39044187 -145244475 + AluY SINE Alu 16 308 0 2047 166 32 56 chr4 39044659 39045033 -145243629 + MLT1A1 LTR MaLR 1 365 0 713 194 26 99 chr4 39045661 39045746 -145242916 - MER45A DNA AcHobo -1404 177 112 2244 115 0 3 chr4 39045746 39046059 -145242603 + AluSx SINE Alu 1 312 0 713 194 26 99 chr4 39046059 39046164 -145242498 - MER45A DNA AcHobo -1469 112 1 429 350 75 31 chr4 39046184 39046570 -145242092 - L2 LINE L2 -57 3215 2813 476 271 101 29 chr4 39048049 39048256 -145240406 + MIR SINE MIR 31 252 -10 290 257 0 14 chr4 39048459 39048529 -145240133 + Tigger6a DNA MER2_type 5 73 -1010 5056 173 31 40 chr4 39048686 39049045 -145239617 + Tigger6a DNA MER2_type 85 446 -1151 1173 199 82 69 chr4 39049045 39049336 -145239326 - AluJo SINE Alu -6 296 2 5056 173 31 40 chr4 39049336 39049851 -145238811 + Tigger6a DNA MER2_type 446 951 -646 1627 179 42 3 chr4 39049851 39050136 -145238526 - AluJo SINE Alu -16 296 1 5056 173 31 40 chr4 39050136 39050267 -145238395 + Tigger6a DNA MER2_type 951 1082 -1 926 174 64 55 chr4 39050722 39050941 -145237721 - AluSg/x SINE Alu -1 311 91 1809 124 35 0 chr4 39051049 39051306 -145237356 + AluSg1 SINE Alu 35 300 -9 197 309 181 0 chr4 39051318 39051412 -145237250 - L3b LINE CR1 -37 1546 1436 279 296 41 20 chr4 39051435 39051533 -145237129 - L2 LINE L2 -33 3280 3181 454 274 95 12 chr4 39051571 39051739 -145236923 - MIR SINE MIR -41 221 40 614 265 148 22 chr4 39051739 39051962 -145236700 + MIR SINE MIR 12 262 0 2494 87 3 0 chr4 39052482 39052794 -145235868 - AluSp SINE Alu 0 313 1 2122 128 80 80 chr4 39053297 39053398 -145235264 + MLT1B LTR MaLR 1 101 -289 2223 122 0 0 chr4 39053398 39053694 -145234968 + AluSc SINE Alu 1 296 -13 2122 128 80 80 chr4 39053694 39053982 -145234680 + MLT1B LTR MaLR 100 390 0 1432 234 63 52 chr4 39055636 39056188 -145232474 - L1M4 LINE L1 -3457 2689 2132 1831 142 10 23 chr4 39056406 39056716 -145231946 + AluJo SINE Alu 1 306 -6 856 202 21 21 chr4 39057271 39057459 -145231203 - MSTB LTR MaLR -48 378 191 1801 65 0 0 chr4 39057462 39057679 -145230983 - L1PA8 LINE L1 0 6172 5956 235 234 252 19 chr4 39057716 39057823 -145230839 - MIR3 SINE MIR -28 180 49 687 209 105 0 chr4 39058153 39058306 -145230356 + MER3 DNA MER1_type 1 122 -87 1972 158 54 36 chr4 39059222 39059767 -145228895 + MLT2A2 LTR ERVL 1 554 0 232 296 157 17 chr4 39060412 39060527 -145228135 + MIR3 SINE MIR 30 160 -48 2426 110 27 0 chr4 39060630 39060967 -145227695 - THE1B LTR MaLR 0 364 19 500 254 146 18 chr4 39061214 39061494 -145227168 + L1ME4a LINE L1 5767 6082 -39 184 289 168 54 chr4 39061817 39061966 -145226696 - L2 LINE L2 -99 3173 3008 1665 178 43 65 chr4 39062427 39062825 -145225837 + MLT1C LTR MaLR 66 454 -13 26 0 0 0 chr4 39063303 39063329 -145225333 + AT_rich Low_complexity Low_complexity 1 26 0 2233 160 9 98 chr4 39063356 39063807 -145224855 - MLT2D LTR ERVL -1 413 3 3777 138 8 7 chr4 39063833 39064422 -145224240 - L1MB3 LINE L1 -1 6182 5593 2162 106 0 3 chr4 39064466 39064779 -145223883 + AluSq SINE Alu 1 312 0 709 281 115 66 chr4 39064901 39065413 -145223249 + MLT1L LTR MaLR 8 544 -71 399 256 41 16 chr4 39065527 39065648 -145223014 - LTR67 LTR ERVL 0 557 434 689 163 22 114 chr4 39065862 39065917 -145222745 - MER96 DNA MER1_type? -8 167 109 2508 81 0 3 chr4 39065917 39066227 -145222435 + AluY SINE Alu 1 309 -2 689 163 22 114 chr4 39066227 39066355 -145222307 - MER96 DNA MER1_type? -66 109 1 563 299 104 43 chr4 39069212 39069557 -145219105 + MLT1L LTR MaLR 246 611 -4 926 215 62 5 chr4 39069567 39069776 -145218886 + MLT1H LTR MaLR 14 234 -315 435 119 0 0 chr4 39070089 39070156 -145218506 + (GGGA)n Simple_repeat Simple_repeat 4 70 0 181 200 0 0 chr4 39070510 39070540 -145218122 + L2 LINE L2 3264 3293 -20 1641 96 55 0 chr4 39071249 39071467 -145217195 - MER30 DNA MER1_type 0 230 1 519 192 56 0 chr4 39071607 39071732 -145216930 - MIR SINE MIR -49 213 82 1100 276 64 34 chr4 39071743 39072182 -145216480 + MLT1J LTR MaLR 53 504 -7 721 219 7 7 chr4 39072607 39072744 -145215918 + MLT1J LTR MaLR 47 183 -328 188 316 184 30 chr4 39073050 39073218 -145215444 + MIR SINE MIR 57 250 -12 216 307 9 97 chr4 39073505 39073619 -145215043 + L2 LINE L2 3169 3272 0 453 283 86 20 chr4 39074005 39074157 -145214505 + MIR SINE MIR 97 258 -4 1232 160 0 62 chr4 39075061 39075286 -145213376 + AluJo SINE Alu 85 295 -17 819 86 0 0 chr4 39075470 39075575 -145213087 - AluSp SINE Alu -208 105 1 1966 136 3 23 chr4 39076821 39077130 -145211532 - AluSq SINE Alu -10 303 1 957 171 34 49 chr4 39077518 39077723 -145210939 + MER20 DNA MER1_type 18 219 0 294 247 69 81 chr4 39077723 39077897 -145210765 + HAL1 LINE L1 22 193 -2314 1984 256 166 50 chr4 39078164 39079311 -145209351 + HAL1 LINE L1 202 1481 -1026 425 321 67 35 chr4 39079328 39079523 -145209139 + L1MCc LINE L1 17 204 -6219 1586 192 97 32 chr4 39079523 39079862 -145208800 - MLT1A1 LTR MaLR 0 365 5 425 321 67 35 chr4 39079862 39080117 -145208545 + L1MCc LINE L1 204 481 -5942 342 0 0 0 chr4 39080600 39080638 -145208024 + (CA)n Simple_repeat Simple_repeat 2 39 0 692 207 0 90 chr4 39081223 39081348 -145207314 - MER5B DNA MER1_type -5 173 69 2034 130 10 3 chr4 39081348 39081640 -145207022 - AluSx SINE Alu -18 294 1 692 207 0 90 chr4 39081640 39081702 -145206960 - MER5B DNA MER1_type -109 69 3 451 294 114 35 chr4 39082642 39082870 -145205792 - MIR SINE MIR 0 262 17 4843 180 24 33 chr4 39083491 39083947 -145204715 + L1MC3 LINE L1 6804 7263 -522 2336 115 72 26 chr4 39083947 39084294 -145204368 + THE1B LTR MaLR 1 363 -1 4843 180 24 33 chr4 39084294 39084828 -145203834 + L1MC3 LINE L1 7263 7785 0 1854 154 76 60 chr4 39084881 39085263 -145203399 + MLT1B LTR MaLR 1 388 -2 2407 77 3 3 chr4 39085620 39085918 -145202744 + AluY SINE Alu 1 298 -13 897 173 0 0 chr4 39086077 39086210 -145202452 - FLAM_C SINE Alu 0 133 1 226 360 0 0 chr4 39087173 39087248 -145201414 + CT-rich Low_complexity Low_complexity 3 77 0 2110 126 10 0 chr4 39087907 39088201 -145200461 + AluSx SINE Alu 1 297 -15 347 244 157 0 chr4 39088374 39088489 -145200173 + MIR SINE MIR 127 259 -3 328 247 97 0 chr4 39089192 39089285 -145199377 + MIR SINE MIR 85 186 -76 291 340 61 14 chr4 39089424 39089571 -145199091 + L2 LINE L2 3117 3270 -2 326 349 163 0 chr4 39089984 39090156 -145198506 - L2 LINE L2 -1 3271 3072 2239 80 0 14 chr4 39090374 39090686 -145197976 + AluY SINE Alu 1 308 0 2158 154 26 6 chr4 39092285 39092636 -145196026 + MLT1A1 LTR MaLR 1 358 -7 280 264 109 45 chr4 39093564 39093674 -145194988 + MLT1J LTR MaLR 382 498 -13 428 302 80 31 chr4 39093712 39093937 -145194725 + MIR SINE MIR 25 260 -2 2162 121 0 3 chr4 39094657 39094942 -145193720 + AluSx SINE Alu 1 286 -26 243 0 0 0 chr4 39094942 39094969 -145193693 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 2162 121 0 3 chr4 39094969 39094988 -145193674 + AluSx SINE Alu 286 304 -8 886 296 46 72 chr4 39095465 39095655 -145193007 - MLT1K LTR MaLR -23 565 372 2205 115 0 3 chr4 39095655 39095960 -145192702 + AluSx SINE Alu 9 312 0 886 296 46 72 chr4 39095960 39096312 -145192350 - MLT1K LTR MaLR -216 372 37 362 276 20 53 chr4 39096647 39096747 -145191915 + MIR SINE MIR 3 98 -164 15669 119 33 7 chr4 39096747 39097868 -145190794 - Tigger1 DNA MER2_type -1 2417 1327 2114 103 7 7 chr4 39097868 39098160 -145190502 + AluSq SINE Alu 22 313 0 15669 119 33 7 chr4 39098160 39099394 -145189268 - Tigger1 DNA MER2_type -1091 1327 1 362 276 20 53 chr4 39099394 39099445 -145189217 + MIR SINE MIR 98 149 -113 2449 43 0 3 chr4 39099641 39099923 -145188739 - AluY SINE Alu -14 297 17 21 0 0 0 chr4 39100523 39100544 -145188118 + AT_rich Low_complexity Low_complexity 1 21 0 5985 92 9 11 chr4 39100562 39101428 -145187234 - L1MA2 LINE L1 0 6304 5441 428 71 0 0 chr4 39101524 39101580 -145187082 - L1MA2 LINE L1 -871 5431 5376 260 316 205 0 chr4 39101683 39101854 -145186808 - Charlie2 DNA MER1_type -2531 251 46 206 226 0 19 chr4 39101891 39101944 -145186718 - MER5B DNA MER1_type -126 52 1 472 304 46 59 chr4 39102415 39102978 -145185684 + L1MEd LINE L1 564 1119 -5000 187 270 7 124 chr4 39103255 39103356 -145185306 + L2 LINE L2 3152 3235 -78 2233 113 33 33 chr4 39103356 39103719 -145184943 + THE1B LTR MaLR 1 363 -1 187 270 7 124 chr4 39103719 39103754 -145184908 + L2 LINE L2 3235 3272 -41 509 297 67 33 chr4 39103840 39104140 -145184522 + HAL1 LINE L1 1416 1725 -782 228 178 22 0 chr4 39104759 39104804 -145183858 + CT-rich Low_complexity Low_complexity 2 47 0 308 322 70 72 chr4 39104879 39104913 -145183749 + L1ME4a LINE L1 5454 5487 -634 2089 116 19 26 chr4 39104913 39105224 -145183438 + AluSx SINE Alu 1 309 -3 308 322 70 72 chr4 39105224 39105645 -145183017 + L1ME4a LINE L1 5487 5908 -213 1878 129 51 46 chr4 39105773 39105940 -145182722 - THE1C LTR MaLR 0 375 210 210 37 0 0 chr4 39105940 39105967 -145182695 + (GA)n Simple_repeat Simple_repeat 1 27 0 2017 151 0 3 chr4 39105975 39106273 -145182389 + AluSx SINE Alu 3 299 -13 1878 129 51 46 chr4 39106273 39106469 -145182193 - THE1C LTR MaLR -171 204 1 8673 151 12 18 chr4 39107198 39108961 -145179701 - L1PB1 LINE L1 -5 6146 4399 234 0 0 0 chr4 39108961 39108987 -145179675 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 8673 151 12 18 chr4 39108987 39109805 -145178857 - L1PB1 LINE L1 -1752 4399 3577 691 223 90 67 chr4 39110070 39110571 -145178091 + MLT1G1 LTR MaLR 1 645 -9 257 272 43 75 chr4 39110580 39110885 -145177777 - L1MC5 LINE L1 -332 7629 7335 681 190 212 11 chr4 39110885 39111069 -145177593 - MER58A DNA MER1_type 0 224 4 280 265 54 121 chr4 39111092 39111631 -145177031 + HAL1 LINE L1 818 1320 -1187 1636 152 0 73 chr4 39111654 39111956 -145176706 - AluJo SINE Alu -20 292 13 242 310 82 29 chr4 39112751 39112922 -145175740 + MER5A DNA MER1_type 7 186 -3 484 220 7 50 chr4 39114131 39114239 -145174423 - MIR SINE MIR -60 202 100 2018 135 67 92 chr4 39114239 39114675 -145173987 + MSTA LTR MaLR 2 426 -2 484 220 7 50 chr4 39114675 39114707 -145173955 - MIR SINE MIR -162 100 68 407 259 110 53 chr4 39114717 39114945 -145173717 - MLT1K LTR MaLR -19 569 329 1599 228 97 14 chr4 39115528 39115999 -145172663 - LTR33A LTR ERVL -7 516 38 251 240 40 0 chr4 39116035 39116110 -145172552 - L1ME4a LINE L1 -11 6110 6033 2583 56 0 0 chr4 39117328 39117632 -145171030 - AluY SINE Alu -7 304 1 240 143 0 0 chr4 39118100 39118142 -145170520 + (TG)n Simple_repeat Simple_repeat 2 43 0 201 39 0 0 chr4 39118895 39118921 -145169741 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 183 42 0 0 chr4 39119300 39119324 -145169338 + (GA)n Simple_repeat Simple_repeat 1 24 0 227 257 59 40 chr4 39119879 39119980 -145168682 - L2 LINE L2 -1 3312 3210 211 341 16 40 chr4 39120043 39120169 -145168493 + MIR3 SINE MIR 75 197 -11 222 224 0 0 chr4 39121175 39121224 -145167438 - MIR SINE MIR -48 214 166 22 0 0 0 chr4 39121621 39121643 -145167019 + AT_rich Low_complexity Low_complexity 1 22 0 2310 105 0 16 chr4 39122228 39122534 -145166128 + AluSx SINE Alu 1 301 -11 285 261 65 11 chr4 39124166 39124258 -145164404 - L2 LINE L2 -5 3308 3212 26 30 0 0 chr4 39124648 39124681 -145163981 + AT_rich Low_complexity Low_complexity 1 33 0 375 269 129 90 chr4 39124850 39125229 -145163433 - MLT1K LTR MaLR -3 585 192 2367 67 3 3 chr4 39126148 39126447 -145162215 - AluY SINE Alu -12 299 1 243 0 0 0 chr4 39126731 39126758 -145161904 + (TATG)n Simple_repeat Simple_repeat 2 28 0 2009 105 84 7 chr4 39126826 39127112 -145161550 - AluSg SINE Alu -2 308 1 287 282 81 32 chr4 39127245 39127369 -145161293 - L2 LINE L2 -2 3270 3141 1821 139 0 8 chr4 39128284 39128550 -145160112 + AluSx SINE Alu 35 298 -14 1474 174 4 0 chr4 39128847 39129082 -145159580 + AluSx SINE Alu 1 236 -76 873 296 84 74 chr4 39129235 39129302 -145159360 + L2 LINE L2 2357 2422 -891 2163 129 0 0 chr4 39129302 39129597 -145159065 + AluSc SINE Alu 1 295 -14 873 296 84 74 chr4 39129597 39130346 -145158316 + L2 LINE L2 2422 3190 -123 1878 169 42 89 chr4 39130346 39130542 -145158120 - MLT1D LTR MaLR -1 504 300 2060 154 0 7 chr4 39130542 39130848 -145157814 - AluSx SINE Alu -8 304 1 1878 169 42 89 chr4 39130848 39131179 -145157483 - MLT1D LTR MaLR -205 300 2 873 296 84 74 chr4 39131179 39131254 -145157408 + L2 LINE L2 3190 3263 -50 904 241 5 5 chr4 39131309 39131525 -145157137 - MIR SINE MIR -42 220 5 314 107 18 0 chr4 39132546 39132602 -145156060 + (TC)n Simple_repeat Simple_repeat 2 58 0 375 263 79 0 chr4 39132821 39132935 -145155727 + MIR SINE MIR 45 167 -95 392 269 56 0 chr4 39132941 39133049 -145155613 - L2 LINE L2 -22 3291 3178 582 226 17 0 chr4 39133132 39133247 -145155415 + MLT1F LTR MaLR 1 117 -425 1531 208 77 51 chr4 39133412 39133840 -145154822 + MLT1F LTR MaLR 104 542 0 291 286 24 32 chr4 39134014 39134140 -145154522 - MIR3 SINE MIR -54 154 30 188 410 10 0 chr4 39134871 39134971 -145153691 + L2 LINE L2 2715 2815 -499 696 235 71 20 chr4 39134971 39135167 -145153495 + MIR SINE MIR 45 250 -12 1190 247 97 43 chr4 39135497 39135962 -145152700 - MLT1H1 LTR MaLR 0 555 66 327 175 105 88 chr4 39136016 39136130 -145152532 + L2 LINE L2 3193 3308 -5 267 315 219 14 chr4 39137379 39137812 -145150850 - L2 LINE L2 -11 3302 2767 2361 96 3 6 chr4 39137848 39138161 -145150501 - AluSx SINE Alu 0 312 1 970 206 16 16 chr4 39138223 39138412 -145150250 + MER5A DNA MER1_type 1 189 0 1565 229 131 25 chr4 39138918 39139408 -145149254 - MLT1F LTR MaLR 0 542 1 382 225 84 58 chr4 39139482 39139532 -145149130 - L2 LINE L2 -42 3271 3224 2429 72 0 10 chr4 39139532 39139838 -145148824 + AluY SINE Alu 1 303 -8 382 225 84 58 chr4 39139838 39139978 -145148684 - L2 LINE L2 -89 3224 3076 1642 227 130 53 chr4 39140039 39140406 -145148256 - Charlie7 DNA MER1_type -1 2611 2274 2291 96 13 0 chr4 39140406 39140708 -145147954 - AluSc SINE Alu -3 306 1 1642 227 130 53 chr4 39140708 39141146 -145147516 - Charlie7 DNA MER1_type -338 2274 1744 438 275 99 30 chr4 39141143 39141376 -145147286 - Charlie7 DNA MER1_type -2018 594 346 * 2204 122 13 3 chr4 39141612 39141916 -145146746 - AluSx SINE Alu 0 312 6 239 275 101 0 chr4 39142151 39142220 -145146442 + L1ME LINE L1 639 714 -5491 559 163 143 41 chr4 39142694 39142890 -145145772 - MER5C DNA MER1_type -54 270 55 563 281 29 25 chr4 39143041 39143322 -145145340 + L1ME LINE L1 1415 1696 -4700 481 243 57 29 chr4 39143651 39143861 -145144801 + L1ME LINE L1 2134 2349 -4047 289 306 45 8 chr4 39143897 39144031 -145144631 + L1ME LINE L1 2408 2546 -3669 1245 213 72 35 chr4 39144053 39144486 -145144176 + L1ME LINE L1 2637 3085 -3130 930 204 70 12 chr4 39144502 39144758 -145143904 + L1ME LINE L1 5410 5678 -553 1795 155 41 33 chr4 39145047 39145409 -145143253 - MLT1A1 LTR MaLR 0 365 1 271 305 29 9 chr4 39145432 39145537 -145143125 + MIR SINE MIR 19 125 -137 261 323 57 16 chr4 39146069 39146193 -145142469 + L2 LINE L2 3144 3272 0 1924 146 3 3 chr4 39146512 39146806 -145141856 - AluJb SINE Alu -18 294 1 330 306 46 56 chr4 39147109 39147375 -145141287 + HERV16 LTR ERVL 1056 1445 -3798 1330 266 53 36 chr4 39147721 39147793 -145140869 + HERV16 LTR ERVL 2855 2924 -2730 2085 103 0 43 chr4 39147793 39148117 -145140545 + AluSg SINE Alu 1 310 0 1330 266 53 36 chr4 39148117 39148518 -145140144 + HERV16 LTR ERVL 2924 3336 -2318 2746 265 127 25 chr4 39148520 39149891 -145138771 + L2 LINE L2 1724 3313 0 4005 168 16 48 chr4 39151062 39151873 -145136789 - LTR1 LTR ERV1 0 785 1 385 294 14 14 chr4 39151942 39152088 -145136574 - MIR3 SINE MIR -46 162 17 2205 123 0 3 chr4 39152794 39153095 -145135567 + AluSx SINE Alu 1 300 -12 539 282 51 0 chr4 39153095 39153251 -145135411 + MIR SINE MIR 29 192 -70 1841 5 5 0 chr4 39153260 39153458 -145135204 + AluYa5 SINE Alu 111 309 -2 590 244 118 39 chr4 39153930 39154159 -145134503 + MIR SINE MIR 16 262 0 1558 168 7 50 chr4 39154709 39155006 -145133656 + AluJb SINE Alu 1 284 -28 2124 97 0 7 chr4 39156424 39156763 -145131899 - AluSg SINE Alu 0 340 4 559 202 53 0 chr4 39156763 39156877 -145131785 - MIR SINE MIR -92 170 51 337 290 39 7 chr4 39159244 39159401 -145129261 - L1ME2 LINE L1 -278 5886 5721 2306 103 7 0 chr4 39159667 39159968 -145128694 + AluSp SINE Alu 1 303 -10 1801 125 4 0 chr4 39160100 39160356 -145128306 - AluSx SINE Alu -2 310 54 2265 95 20 0 chr4 39160679 39160974 -145127688 - AluSx SINE Alu -10 302 2 359 248 70 0 chr4 39160999 39161128 -145127534 - L1ME4a LINE L1 -2 6119 5982 206 188 0 21 chr4 39161666 39161714 -145126948 + L2 LINE L2 2716 2762 -552 2057 120 11 11 chr4 39162069 39162400 -145126262 + AluSx SINE Alu 1 331 0 2349 106 0 0 chr4 39163001 39163302 -145125360 - AluSx SINE Alu -11 301 1 397 338 20 26 chr4 39163468 39163770 -145124892 + L2 LINE L2 662 961 -2353 630 279 40 53 chr4 39164470 39164699 -145123963 - L2 LINE L2 0 3313 3088 2017 162 105 37 chr4 39164699 39164899 -145123763 - MSTB1 LTR MaLR -4 428 243 2140 117 0 20 chr4 39164899 39165198 -145123464 - AluSq SINE Alu -20 293 1 2017 162 105 37 chr4 39165198 39165398 -145123264 - MSTB1 LTR MaLR -189 243 1 630 279 40 53 chr4 39165398 39165490 -145123172 - L2 LINE L2 -225 3088 2996 754 266 178 0 chr4 39165523 39165827 -145122835 - MLT1L LTR MaLR -215 400 43 263 160 20 20 chr4 39165873 39165923 -145122739 - L2 LINE L2 -19 3253 3204 319 228 238 0 chr4 39166128 39166229 -145122433 - L2 LINE L2 0 3313 3189 245 119 0 0 chr4 39166293 39166335 -145122327 - MSTB1 LTR MaLR -326 106 65 266 303 77 64 chr4 39166346 39166729 -145121933 - L2 LINE L2 -194 3078 2676 1640 156 54 10 chr4 39166927 39167222 -145121440 - AluSx SINE Alu 0 312 5 2279 100 23 0 chr4 39169018 39169318 -145119344 - AluSg SINE Alu -3 307 1 180 27 81 0 chr4 39169445 39169482 -145119180 + A-rich Low_complexity Low_complexity 2 41 0 1017 32 0 8 chr4 39170139 39170264 -145118398 + L1PA5 LINE L1 6028 6151 -3 31 0 0 0 chr4 39170264 39170295 -145118367 + AT_rich Low_complexity Low_complexity 1 31 0 2156 117 3 0 chr4 39170493 39170793 -145117869 - AluY SINE Alu -10 301 1 1753 103 9 0 chr4 39171803 39172036 -145116626 - AluSg SINE Alu -75 235 1 2192 130 0 3 chr4 39172101 39172409 -145116253 - AluSx SINE Alu -5 307 1 2351 94 3 10 chr4 39172679 39172986 -145115676 - AluSc SINE Alu -4 305 1 2010 159 35 16 chr4 39173706 39174076 -145114586 + MSTB1 LTR MaLR 1 377 -55 315 65 0 0 chr4 39174076 39174122 -145114540 + (TC)n Simple_repeat Simple_repeat 2 47 0 237 173 77 0 chr4 39174133 39174185 -145114477 + MSTB1 LTR MaLR 402 457 0 1586 142 37 15 chr4 39174238 39174506 -145114156 - AluJo SINE Alu -38 274 1 2360 98 3 0 chr4 39174673 39174970 -145113692 - AluSx SINE Alu -12 300 3 258 285 33 98 chr4 39175181 39175310 -145113352 - MIR SINE MIR -12 250 139 2054 130 0 3 chr4 39175310 39175610 -145113052 + AluSx SINE Alu 1 299 -13 258 285 33 98 chr4 39175610 39175694 -145112968 - MIR SINE MIR -123 139 51 313 293 0 0 chr4 39175824 39175899 -145112763 - MIR3 SINE MIR -16 192 118 1507 116 27 4 chr4 39176139 39176364 -145112298 - MER30 DNA MER1_type 0 230 1 350 260 8 0 chr4 39177287 39177414 -145111248 + (TA)n Simple_repeat Simple_repeat 2 129 0 2175 113 0 10 chr4 39178071 39178372 -145110290 + AluSx SINE Alu 1 298 -14 298 210 25 25 chr4 39178514 39178595 -145110067 + MIR SINE MIR 5 85 -177 2017 141 0 7 chr4 39178617 39178923 -145109739 - AluSx SINE Alu 0 304 1 1641 184 14 3 chr4 39178925 39179218 -145109444 - AluJo SINE Alu -16 296 1 638 168 7 0 chr4 39179231 39179368 -145109294 + (TAGA)n Simple_repeat Simple_repeat 2 139 0 182 289 0 0 chr4 39179374 39179412 -145109250 + MIR SINE MIR 204 241 -21 312 260 153 68 chr4 39179502 39179737 -145108925 - Charlie8 DNA MER1_type -2160 257 3 2122 125 10 0 chr4 39179951 39180256 -145108406 - AluSx SINE Alu -4 308 1 518 131 10 71 chr4 39180257 39180356 -145108306 + LTR1 LTR ERV1 693 785 0 59 27 0 0 chr4 39180406 39180479 -145108183 + AT_rich Low_complexity Low_complexity 1 73 0 2149 123 13 0 chr4 39180671 39180973 -145107689 + AluSg SINE Alu 3 308 -2 1788 114 89 11 chr4 39181147 39181428 -145107234 - AluSx SINE Alu -9 303 1 1026 104 8 0 chr4 39181428 39181562 -145107100 - AluSq/x SINE Alu -177 135 1 820 61 0 0 chr4 39181720 39181818 -145106844 + AluSg/x SINE Alu 201 298 -11 378 192 46 83 chr4 39181830 39182050 -145106612 - MIR SINE MIR -40 222 16 2216 107 7 3 chr4 39182565 39182864 -145105798 + AluSx SINE Alu 1 300 -12 240 35 0 0 chr4 39182868 39182897 -145105765 + (TA)n Simple_repeat Simple_repeat 2 30 0 216 0 0 0 chr4 39182896 39182920 -145105742 + (GA)n Simple_repeat Simple_repeat 2 25 0 * 232 353 110 15 chr4 39183787 39183923 -145104739 - L2 LINE L2 -3 3269 3121 2199 130 0 0 chr4 39183926 39184227 -145104435 - AluSx SINE Alu -11 301 1 4303 126 104 99 chr4 39184260 39185633 -145103029 + pTR5 LTR ERV1 743 2438 0 2367 112 0 0 chr4 39185965 39186269 -145102393 + AluSx SINE Alu 1 304 -8 1819 159 0 23 chr4 39186713 39187021 -145101641 - Tigger2a DNA MER2_type 0 444 144 1477 103 0 0 chr4 39187022 39187207 -145101455 + AluSg SINE Alu 1 185 -125 461 134 12 24 chr4 39187207 39187289 -145101373 + AluSg SINE Alu 217 297 -12 737 193 0 47 chr4 39187290 39187440 -145101222 - Tigger2a DNA MER2_type -291 143 1 503 266 70 25 chr4 39187448 39187647 -145101015 - L1ME LINE L1 -303 5818 5611 2483 73 0 0 chr4 39188562 39188862 -145099800 - AluY SINE Alu -11 300 1 1915 103 31 0 chr4 39189289 39189550 -145099112 + AluSx SINE Alu 1 269 -43 2389 79 3 0 chr4 39190041 39190344 -145098318 + AluY SINE Alu 1 304 -7 1000 303 98 34 chr4 39190379 39190941 -145097721 - L1MC4a LINE L1 -1878 5930 5333 318 80 0 0 chr4 39191095 39191145 -145097517 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 388 284 30 56 chr4 39192370 39192567 -145096095 - L2 LINE L2 -19 3294 3103 2377 74 24 0 chr4 39192635 39192932 -145095730 + AluSq SINE Alu 1 304 -9 207 288 136 64 chr4 39193296 39193421 -145095241 + L2 LINE L2 3139 3272 0 253 250 107 9 chr4 39193612 39193724 -145094938 - MER112 DNA MER1_type -25 235 113 261 244 0 49 chr4 39193856 39193938 -145094724 - MER112 DNA MER1_type -175 85 8 238 259 122 38 chr4 39194109 39194240 -145094422 - MIR SINE MIR -74 188 47 577 333 61 4 chr4 39194568 39194799 -145093863 + MIR SINE MIR 10 253 -9 5563 236 72 15 chr4 39194917 39196791 -145091871 - L1MEc LINE L1 -2325 3890 1973 1669 182 133 6 chr4 39196795 39197141 -145091521 + MER47B DNA MER2_type 28 417 -1 2981 269 80 56 chr4 39197143 39197700 -145090962 - L1MEc LINE L1 -4425 1971 1429 635 211 8 16 chr4 39197700 39197828 -145090834 - FLAM_A SINE Alu -2 131 5 2981 269 80 56 chr4 39197828 39198214 -145090448 - L1MEc LINE L1 -4967 1429 1054 1458 203 37 11 chr4 39198214 39198519 -145090143 - AluJb SINE Alu 0 316 5 2981 269 80 56 chr4 39198519 39198839 -145089823 - L1MEc LINE L1 -5342 1054 743 1447 148 170 0 chr4 39198839 39199116 -145089546 + MER33 DNA MER1_type 1 324 0 826 218 114 5 chr4 39199124 39199326 -145089336 + MER58A DNA MER1_type 1 224 0 2981 269 80 56 chr4 39199326 39199856 -145088806 - L1MEc LINE L1 -5659 737 122 2026 88 4 0 chr4 39200250 39200499 -145088163 - AluSp SINE Alu -63 250 1 212 208 0 38 chr4 39200963 39201016 -145087646 + A-rich Low_complexity Low_complexity 3 53 0 441 0 0 0 chr4 39201077 39201126 -145087536 + (TGGA)n Simple_repeat Simple_repeat 4 52 0 317 321 87 29 chr4 39201314 39201591 -145087071 + L2 LINE L2 3016 3308 -5 300 291 99 20 chr4 39201724 39201875 -145086787 + MIR SINE MIR 31 193 -69 1127 158 0 0 chr4 39201883 39202060 -145086602 + FRAM SINE Alu 1 176 0 41 66 0 0 chr4 39202665 39202741 -145085921 + AT_rich Low_complexity Low_complexity 1 76 0 2191 127 3 13 chr4 39202792 39203107 -145085555 + AluSx SINE Alu 1 312 0 436 250 40 8 chr4 39203337 39203461 -145085201 + MIR SINE MIR 112 239 -23 416 183 24 24 chr4 39203510 39203592 -145085070 + MLT1B LTR MaLR 1 82 -308 1631 206 27 0 chr4 39203598 39203890 -145084772 - AluJb SINE Alu -12 300 1 1002 133 0 0 chr4 39203890 39204025 -145084637 - AluJo SINE Alu -177 135 1 1568 123 72 93 chr4 39204026 39204358 -145084304 + MLT1B LTR MaLR 66 390 0 535 202 18 0 chr4 39204358 39204472 -145084190 + L2 LINE L2 3188 3303 -10 24 0 0 0 chr4 39204597 39204621 -145084041 + AT_rich Low_complexity Low_complexity 1 24 0 2012 147 0 3 chr4 39205457 39205757 -145082905 - AluJb SINE Alu -13 299 1 1617 124 120 8 chr4 39205995 39206262 -145082400 + AluJb SINE Alu 1 297 -15 4224 126 20 88 chr4 39206535 39206998 -145081664 + LTR1 LTR ERV1 1 494 -291 2183 130 3 0 chr4 39206998 39207297 -145081365 + AluSx SINE Alu 1 300 -12 4224 126 20 88 chr4 39207297 39207574 -145081088 + LTR1 LTR ERV1 494 680 -105 2091 131 10 3 chr4 39207574 39207879 -145080783 - AluSx SINE Alu -5 307 1 4224 126 20 88 chr4 39207879 39207979 -145080683 + LTR1 LTR ERV1 680 785 0 21 36 0 0 chr4 39208238 39208266 -145080396 + GC_rich Low_complexity Low_complexity 1 28 0 21 100 0 0 chr4 39208328 39208398 -145080264 + GC_rich Low_complexity Low_complexity 1 70 0 23 0 0 0 chr4 39208412 39208435 -145080227 + GC_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr4 39208606 39208634 -145080028 + GC_rich Low_complexity Low_complexity 1 28 0 24 53 0 0 chr4 39209261 39209299 -145079363 + GC_rich Low_complexity Low_complexity 1 38 0 185 0 40 0 chr4 39210104 39210129 -145078533 + (CCGCG)n Simple_repeat Simple_repeat 5 30 0 22 0 0 0 chr4 39210142 39210164 -145078498 + GC_rich Low_complexity Low_complexity 1 22 0 294 198 9 43 chr4 39210314 39210430 -145078232 + G-rich Low_complexity Low_complexity 4 115 0 23 0 0 0 chr4 39210482 39210505 -145078157 + GC_rich Low_complexity Low_complexity 1 23 0 242 123 46 46 chr4 39210548 39210613 -145078049 + (CGGGG)n Simple_repeat Simple_repeat 4 68 0 21 36 0 0 chr4 39210676 39210704 -145077958 + GC_rich Low_complexity Low_complexity 1 28 0 258 321 0 0 chr4 39211492 39211598 -145077064 + C-rich Low_complexity Low_complexity 1 106 0 207 100 0 0 chr4 39212951 39212981 -145075681 + (T)n Simple_repeat Simple_repeat 1 30 0 22 35 0 0 chr4 39214730 39214759 -145073903 + AT_rich Low_complexity Low_complexity 1 29 0 2551 81 0 0 chr4 39216192 39216499 -145072163 + AluSq SINE Alu 1 307 -6 188 98 0 98 chr4 39217412 39217453 -145071209 - L2 LINE L2 0 3313 3277 341 275 49 34 chr4 39217695 39217869 -145070793 + MIR3 SINE MIR 12 185 -62 550 221 46 8 chr4 39218199 39218330 -145070332 + MIR SINE MIR 32 167 -95 2261 110 0 0 chr4 39222737 39223029 -145065633 + AluSx SINE Alu 1 292 -20 454 212 23 30 chr4 39223332 39223464 -145065198 - L1MC5 LINE L1 -760 7201 7071 2133 109 7 7 chr4 39223535 39223837 -145064825 - AluSq SINE Alu -11 302 1 396 0 0 0 chr4 39224455 39224499 -145064163 + (TG)n Simple_repeat Simple_repeat 2 45 0 362 299 91 49 chr4 39225822 39226259 -145062403 + L1ME LINE L1 5330 5797 -324 2233 118 0 0 chr4 39226790 39227094 -145061568 - AluSx SINE Alu -6 306 3 2455 55 3 29 chr4 39227351 39227658 -145061004 + AluSp SINE Alu 1 299 -14 2247 101 0 0 chr4 39228654 39228941 -145059721 - AluSx SINE Alu -25 287 1 780 182 8 0 chr4 39230509 39230641 -145058021 - FLAM_A SINE Alu 0 133 1 1262 271 67 23 chr4 39230779 39231214 -145057448 - MER69 DNA AcHobo -1933 593 140 2509 183 21 30 chr4 39231217 39231587 -145057075 + MER6A DNA MER2_type 1 366 -499 2401 66 7 3 chr4 39231587 39231890 -145056772 - AluY SINE Alu -7 304 1 2509 183 21 30 chr4 39231890 39232045 -145056617 + MER6A DNA MER2_type 366 521 -84 1861 147 25 0 chr4 39232145 39232430 -145056232 - AluSx SINE Alu -20 292 1 2196 132 0 0 chr4 39232813 39233123 -145055539 - AluSx SINE Alu -2 310 1 921 180 197 34 chr4 39233337 39233632 -145055030 - MER2 DNA MER2_type 0 344 2 653 189 84 29 chr4 39233747 39234063 -145054599 - MER93b LTR ERV1 0 402 8 4987 142 10 16 chr4 39234820 39235590 -145053072 - LTR39 LTR ERV1 0 783 18 2253 129 3 0 chr4 39236000 39236311 -145052351 - AluSx SINE Alu 0 312 1 1481 214 169 38 chr4 39236336 39236832 -145051830 - MER34B LTR ERV1 0 565 5 23 33 0 0 chr4 39237594 39237624 -145051038 + AT_rich Low_complexity Low_complexity 1 30 0 357 221 103 81 chr4 39237875 39238011 -145050651 + L2 LINE L2 3175 3313 0 1123 114 0 0 chr4 39238638 39238787 -145049875 + AluSg SINE Alu 1 149 -161 543 345 73 0 chr4 39239108 39239340 -145049322 - MIR SINE MIR 0 262 14 1709 112 50 8 chr4 39239384 39239644 -145049018 + AluSx SINE Alu 23 293 -19 258 32 0 0 chr4 39240017 39240048 -145048614 + (TG)n Simple_repeat Simple_repeat 1 31 0 2188 91 0 21 chr4 39240089 39240374 -145048288 + AluSg SINE Alu 1 279 -31 2342 101 0 0 chr4 39240400 39240706 -145047956 + AluSg1 SINE Alu 1 306 -3 1563 101 55 0 chr4 39240829 39241047 -145047615 + MER30 DNA MER1_type 1 230 0 2275 97 7 10 chr4 39241066 39241374 -145047288 + AluSx SINE Alu 1 307 -5 236 296 0 39 chr4 39241525 39241615 -145047047 + MER5A DNA MER1_type 84 168 -10 251 229 0 57 chr4 39241629 39241699 -145046963 + MER69 DNA AcHobo 1 66 -111 254 94 0 0 chr4 39241746 39241778 -145046884 - MER6 DNA MER2_type 0 865 834 1022 159 0 6 chr4 39241880 39242409 -145046253 + (TGG)n Simple_repeat Simple_repeat 1 526 0 451 327 32 36 chr4 39242548 39242768 -145045894 + L2 LINE L2 3054 3272 0 192 200 0 0 chr4 39242790 39242835 -145045827 + (TGAA)n Simple_repeat Simple_repeat 4 48 0 241 299 231 0 chr4 39243193 39243310 -145045352 - MIR SINE MIR -91 171 28 829 264 98 65 chr4 39243360 39243788 -145044874 - MLT1J1 LTR MaLR -4 442 1 421 285 143 72 chr4 39244012 39244332 -145044330 + MLT1K LTR MaLR 131 490 -98 2154 120 10 0 chr4 39244332 39244631 -145044031 - AluSx SINE Alu -10 302 1 421 285 143 72 chr4 39244631 39244738 -145043924 + MLT1K LTR MaLR 490 588 0 234 62 0 0 chr4 39244847 39244879 -145043783 + (TC)n Simple_repeat Simple_repeat 1 32 0 785 183 58 62 chr4 39244908 39245116 -145043546 + MLT1B LTR MaLR 19 225 -165 198 191 0 0 chr4 39245227 39245269 -145043393 + (TATATG)n Simple_repeat Simple_repeat 3 44 0 195 42 0 0 chr4 39245326 39245350 -145043312 + (TG)n Simple_repeat Simple_repeat 2 25 0 2222 60 13 57 chr4 39245569 39245884 -145042778 + AluSc SINE Alu 1 301 -8 341 277 125 9 chr4 39245893 39246005 -145042657 + MIR SINE MIR 45 169 -93 1507 55 0 4 chr4 39246006 39246217 -145042445 + L1PA6 LINE L1 5701 5906 -225 23 33 0 0 chr4 39247319 39247349 -145041313 + AT_rich Low_complexity Low_complexity 1 30 0 1802 147 22 26 chr4 39248295 39248608 -145040054 - AluJo SINE Alu 0 312 1 22 35 0 0 chr4 39249700 39249729 -145038933 + AT_rich Low_complexity Low_complexity 1 29 0 1972 161 6 3 chr4 39249915 39250226 -145038436 + AluJb SINE Alu 1 312 0 220 238 16 32 chr4 39250343 39250406 -145038256 + MER5A DNA MER1_type 128 189 0 299 273 0 0 chr4 39250620 39250686 -145037976 - MER5B DNA MER1_type -96 82 17 25 0 0 0 chr4 39251065 39251090 -145037572 + AT_rich Low_complexity Low_complexity 1 25 0 2182 91 19 60 chr4 39257129 39257447 -145031215 - AluSg SINE Alu -5 305 1 581 248 52 7 chr4 39257687 39257840 -145030822 - MIR SINE MIR -2 260 101 226 138 52 52 chr4 39257840 39257898 -145030764 - LTR31 LTR ERV1 -82 537 480 242 311 0 19 chr4 39258181 39258284 -145030378 - L1MC4 LINE L1 -1328 6714 6614 308 275 0 22 chr4 39258362 39258453 -145030209 + L1MC4 LINE L1 6614 6702 -1340 1859 166 0 0 chr4 39258461 39258751 -145029911 - AluJb SINE Alu -22 290 1 3811 221 75 20 chr4 39258811 39260407 -145028255 - L1ME1 LINE L1 -78 6088 4398 249 315 33 11 chr4 39260412 39260504 -145028158 + L1MDb LINE L1 240 333 -5786 398 289 147 0 chr4 39260512 39260737 -145027925 + L1MEd LINE L1 601 858 -5261 291 156 0 0 chr4 39260829 39260874 -145027788 - Alu SINE Alu -262 46 2 2278 105 0 0 chr4 39260995 39261299 -145027363 - AluSg SINE Alu -6 304 1 774 121 0 48 chr4 39261316 39261440 -145027222 - FLAM_C SINE Alu -17 126 9 2338 236 49 9 chr4 39261649 39262340 -145026322 + L1MDb LINE L1 497 1226 -4893 418 223 22 58 chr4 39262481 39262620 -145026042 + LTR16A1 LTR ERVL 324 457 0 27 0 0 0 chr4 39262744 39262771 -145025891 + AT_rich Low_complexity Low_complexity 1 27 0 312 225 79 34 chr4 39262773 39262862 -145025800 + Zaphod DNA AcHobo 3939 4031 0 946 285 51 60 chr4 39262869 39263539 -145025123 - L1ME1 LINE L1 -1773 4373 3710 2792 173 29 35 chr4 39263594 39263893 -145024769 - MER89 LTR ERV1 0 559 263 2281 101 3 0 chr4 39263893 39264189 -145024473 + AluSx SINE Alu 1 297 -15 2792 173 29 35 chr4 39264189 39264439 -145024223 - MER89 LTR ERV1 -296 263 13 501 330 62 12 chr4 39264448 39264945 -145023717 - L1ME1 LINE L1 -2510 3636 3115 21 0 0 0 chr4 39265023 39265044 -145023618 + AT_rich Low_complexity Low_complexity 1 21 0 739 30 10 30 chr4 39265091 39265191 -145023471 - L1PA4 LINE L1 0 6155 6058 2480 123 22 8 chr4 39265209 39265568 -145023094 - THE1B LTR MaLR 0 364 1 276 321 86 0 chr4 39265764 39265845 -145022817 + MER91A DNA MER1_type 109 196 0 239 328 112 34 chr4 39265968 39266404 -145022258 + L1M4 LINE L1 4786 5255 -891 1451 188 43 8 chr4 39266476 39266731 -145021931 + Tigger7 DNA MER2_type 1 264 -2223 186 118 0 0 chr4 39266731 39266765 -145021897 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 571 185 0 0 chr4 39266766 39266858 -145021804 + Tigger7 DNA MER2_type 2496 2587 0 209 226 0 19 chr4 39266987 39267040 -145021622 + GA-rich Low_complexity Low_complexity 3 54 0 2524 25 0 3 chr4 39267254 39267562 -145021100 - AluYa5 SINE Alu 0 307 1 1129 218 54 51 chr4 39268012 39268384 -145020278 - MER69B DNA AcHobo -1 1225 853 2137 123 7 0 chr4 39268384 39268686 -145019976 - AluSx SINE Alu -4 308 5 684 141 0 0 chr4 39268721 39268813 -145019849 - FLAM SINE Alu -14 129 38 229 266 16 0 chr4 39268877 39268941 -145019721 - MER69B DNA AcHobo -378 848 784 965 140 6 0 chr4 39269072 39269250 -145019412 + (CCA)n Simple_repeat Simple_repeat 2 180 0 1920 144 7 7 chr4 39269429 39269714 -145018948 - AluSx SINE Alu -17 295 11 208 296 26 26 chr4 39269747 39269862 -145018800 + (TATATG)n Simple_repeat Simple_repeat 3 117 0 * 215 337 0 12 chr4 39269798 39269884 -145018778 + (CATATA)n Simple_repeat Simple_repeat 2 86 0 1511 194 52 3 chr4 39270057 39270076 -145018586 - AluJo SINE Alu -10 302 285 305 24 24 0 chr4 39270076 39270118 -145018544 + (TTAA)n Simple_repeat Simple_repeat 1 43 0 1511 194 52 3 chr4 39270118 39270386 -145018276 - AluJo SINE Alu -27 285 1 230 217 0 0 chr4 39270456 39270502 -145018160 + Alu SINE Alu 126 171 -132 841 176 35 129 chr4 39270632 39270887 -145017775 - MIR SINE MIR 0 262 32 1834 144 28 11 chr4 39271712 39271997 -145016665 + AluJb SINE Alu 14 303 -9 2047 152 21 50 chr4 39272154 39272479 -145016183 + MLT1A1 LTR MaLR 1 315 -50 2537 45 6 22 chr4 39272479 39272793 -145015869 + AluY SINE Alu 1 309 -2 2047 152 21 50 chr4 39272793 39272843 -145015819 + MLT1A1 LTR MaLR 315 365 0 560 323 23 18 chr4 39272962 39273182 -145015480 + MIR SINE MIR 41 261 -1 356 289 89 6 chr4 39273939 39274110 -145014552 + MIR SINE MIR 47 235 -27 2596 59 0 0 chr4 39274705 39275009 -145013653 + AluY SINE Alu 1 304 -7 1768 180 0 0 chr4 39275016 39275323 -145013339 + AluJb SINE Alu 1 307 0 2325 84 37 0 chr4 39275399 39275696 -145012966 + AluSp SINE Alu 1 308 -5 233 160 0 100 chr4 39276005 39276055 -145012607 - MLT2D LTR ERVL 0 414 370 525 256 117 36 chr4 39276169 39276392 -145012270 + MIR SINE MIR 7 247 -15 2229 132 25 25 chr4 39276447 39276802 -145011860 + THE1A LTR MaLR 1 355 0 339 353 43 0 chr4 39277200 39277316 -145011346 - L3 LINE CR1 -837 740 620 467 250 9 26 chr4 39277356 39277472 -145011190 + MER81 DNA DNA 1 114 0 222 299 176 21 chr4 39277615 39277802 -145010860 - L3 LINE CR1 -1128 449 234 234 320 126 0 chr4 39279989 39280092 -145008570 + MIR SINE MIR 12 127 -135 503 192 30 63 chr4 39282045 39282176 -145006486 - MIR SINE MIR -62 146 50 250 211 0 42 chr4 39282576 39282671 -145005991 + L1MC4 LINE L1 6615 6705 -1337 25 31 0 0 chr4 39282833 39282865 -145005797 + AT_rich Low_complexity Low_complexity 1 32 0 702 212 41 0 chr4 39283942 39284088 -145004574 + L2 LINE L2 3117 3268 -4 807 172 0 0 chr4 39285094 39285216 -145003446 + FLAM_A SINE Alu 1 122 -11 198 0 0 0 chr4 39285690 39285712 -145002950 + (A)n Simple_repeat Simple_repeat 1 22 0 4989 119 39 11 chr4 39486146 39486911 -144801751 + MER11C LTR ERVK 271 1057 -14 192 77 0 0 chr4 39487083 39487109 -144801553 + (TCCC)n Simple_repeat Simple_repeat 3 28 0 696 133 0 0 chr4 39487123 39487228 -144801434 - L1 LINE L1 -1314 4832 4728 2760 183 118 15 chr4 39487328 39487929 -144800733 + MER63C DNA MER1_type 268 930 0 334 303 79 7 chr4 39488934 39489086 -144799576 + MIR3 SINE MIR 33 195 -13 518 332 70 29 chr4 39489451 39489695 -144798967 + MIR SINE MIR 8 261 -1 359 303 90 0 chr4 39490130 39490252 -144798410 + L2 LINE L2 3180 3312 -1 433 176 0 0 chr4 39490255 39490323 -144798339 + AluS SINE Alu 2 69 -244 471 135 156 31 chr4 39490962 39491058 -144797604 + Ricksha DNA DNA 8 115 -1139 * 5925 131 20 44 chr4 39491041 39491388 -144797274 + Ricksha DNA DNA 1707 2061 -1185 2287 95 0 7 chr4 39491388 39491684 -144796978 + AluSg SINE Alu 6 299 -11 5925 131 20 44 chr4 39491684 39492340 -144796322 + Ricksha DNA DNA 2061 2686 -560 1278 173 4 13 chr4 39492341 39492572 -144796090 + AluJo SINE Alu 2 230 -82 2797 149 113 10 chr4 39492609 39493132 -144795530 + Ricksha DNA DNA 2678 3254 0 719 142 9 9 chr4 39493753 39493866 -144794796 - MLT1A1 LTR MaLR -252 113 1 437 292 112 52 chr4 39495408 39495803 -144792859 + L1M4 LINE L1 2429 2852 -3294 1889 128 0 18 chr4 39495803 39496077 -144792585 + AluSx SINE Alu 1 269 -43 437 292 112 52 chr4 39496077 39496102 -144792560 + L1M4 LINE L1 2852 2874 -3272 2216 191 34 46 chr4 39496331 39496833 -144791829 + MLT1D LTR MaLR 8 503 -2 2210 127 10 0 chr4 39496841 39497149 -144791513 + AluSx SINE Alu 1 311 -1 396 343 62 16 chr4 39497353 39497595 -144791067 + L1MEd LINE L1 849 1101 -5018 21 57 0 0 chr4 39497891 39497926 -144790736 + AT_rich Low_complexity Low_complexity 1 35 0 36987 60 14 1 chr4 39498330 39502982 -144785680 + L1P LINE L1 1 4711 -1435 2892 110 5 2 chr4 39503216 39503616 -144785046 - MLT2A2 LTR ERVL -51 402 2 450 336 8 16 chr4 39503627 39503752 -144784910 - L2 LINE L2 -8 3264 3141 317 270 101 2 chr4 39503851 39503971 -144784691 - MIR SINE MIR -57 151 19 203 257 68 40 chr4 39504608 39504682 -144783980 - L2 LINE L2 -4 3268 3193 434 284 0 98 chr4 39504908 39505123 -144783539 + L2 LINE L2 3116 3309 -4 180 0 0 0 chr4 39505354 39505374 -144783288 + (T)n Simple_repeat Simple_repeat 1 20 0 937 176 6 0 chr4 39506615 39506774 -144781888 + AluJb SINE Alu 138 297 -15 268 240 125 31 chr4 39507076 39507172 -144781490 - L2 LINE L2 -6 3307 3203 2087 121 3 0 chr4 39508356 39508670 -144779992 + AluSx SINE Alu 1 315 0 260 296 10 31 chr4 39508734 39508832 -144779830 - MER5A DNA MER1_type -6 183 88 1607 185 67 34 chr4 39508897 39509254 -144779408 - MLT1E LTR MaLR -2 591 223 294 177 0 32 chr4 39509391 39509453 -144779209 - MLT1E LTR MaLR -581 73 14 2140 135 13 0 chr4 39509490 39509794 -144778868 + AluSg SINE Alu 1 308 -2 2230 102 3 7 chr4 39510197 39510492 -144778170 + AluSq SINE Alu 4 297 -16 962 202 0 6 chr4 39510791 39510974 -144777688 + FRAM SINE Alu 1 176 0 905 281 88 48 chr4 39510995 39511068 -144777594 + L1M4 LINE L1 3705 3774 -2372 354 45 0 0 chr4 39511068 39511112 -144777550 + (CA)n Simple_repeat Simple_repeat 2 45 0 905 281 88 48 chr4 39511112 39511871 -144776791 + L1M4 LINE L1 3774 4570 -1576 404 306 102 46 chr4 39512017 39512477 -144776185 + L1MA4A LINE L1 4912 5397 -749 2326 107 10 0 chr4 39512616 39512924 -144775738 + AluSx SINE Alu 1 311 -1 2355 85 3 0 chr4 39513078 39513371 -144775291 + AluSp SINE Alu 1 294 -19 613 253 141 24 chr4 39514783 39514963 -144773699 - LTR33 LTR ERVL -4 517 359 189 0 0 0 chr4 39514963 39514984 -144773678 + (CAGAGA)n Simple_repeat Simple_repeat 2 22 0 613 253 141 24 chr4 39514984 39514999 -144773663 - LTR33 LTR ERVL -162 359 347 282 29 0 0 chr4 39514999 39515034 -144773628 + (CA)n Simple_repeat Simple_repeat 2 36 0 613 253 141 24 chr4 39515034 39515086 -144773576 - LTR33 LTR ERVL -174 347 240 3188 138 113 63 chr4 39515133 39515278 -144773384 + L1MA4A LINE L1 5520 5656 -647 2001 147 0 16 chr4 39515278 39515591 -144773071 + AluJb SINE Alu 5 312 0 3188 138 113 63 chr4 39515591 39516170 -144772492 + L1MA4A LINE L1 5656 6280 -23 603 262 33 11 chr4 39516171 39516354 -144772308 - LTR33 LTR ERVL -331 190 4 185 333 40 13 chr4 39516612 39516687 -144771975 - L2 LINE L2 -1 3312 3236 189 239 65 0 chr4 39516819 39516865 -144771797 + L2 LINE L2 3265 3313 0 1097 107 0 0 chr4 39517146 39517295 -144771367 + L1P5 LINE L1 5520 5668 -488 411 109 0 0 chr4 39517299 39517354 -144771308 + Alu SINE Alu 5 59 -250 2308 100 3 0 chr4 39518067 39518366 -144770296 + AluSc SINE Alu 1 300 -9 1086 252 55 77 chr4 39518667 39519228 -144769434 + MER39 LTR ERV1 1 707 0 189 282 0 0 chr4 39519699 39519738 -144768924 - L2 LINE L2 -95 3218 3180 595 303 0 56 chr4 39519939 39520137 -144768525 + L2 LINE L2 3081 3267 -5 899 170 7 7 chr4 39520144 39520297 -144768365 + FRAM SINE Alu 1 153 -23 236 288 220 0 chr4 39520309 39520427 -144768235 - MIR SINE MIR -13 249 106 5245 154 42 22 chr4 39522351 39522809 -144765853 + L1MA5 LINE L1 5325 5772 -528 2299 117 66 26 chr4 39522809 39523159 -144765503 - THE1B LTR MaLR 0 364 1 5245 154 42 22 chr4 39523159 39523652 -144765010 + L1MA5 LINE L1 5772 6295 -5 777 269 43 5 chr4 39523664 39523872 -144764790 - MLT1L LTR MaLR -23 592 377 2377 88 0 0 chr4 39523921 39524216 -144764446 - AluSg SINE Alu -15 295 1 584 194 0 0 chr4 39524254 39524347 -144764315 - FLAM_A SINE Alu -45 97 5 504 282 112 50 chr4 39524371 39524612 -144764050 - MLT1L LTR MaLR -335 280 25 2234 98 0 3 chr4 39524666 39524961 -144763701 - AluSg SINE Alu -16 294 1 2878 96 3 3 chr4 39525545 39525908 -144762754 - THE1B LTR MaLR -1 363 1 393 200 9 36 chr4 39525910 39526020 -144762642 + LTR67 LTR ERVL 428 534 -23 628 234 35 35 chr4 39526046 39526217 -144762445 - MIR3 SINE MIR -3 205 35 1060 229 12 33 chr4 39526757 39527002 -144761660 - MIR SINE MIR -21 241 2 523 207 0 0 chr4 39527046 39527128 -144761534 - AluS SINE Alu -231 82 1 21 0 0 0 chr4 39527472 39527493 -144761169 + AT_rich Low_complexity Low_complexity 1 21 0 2145 111 4 0 chr4 39527821 39528131 -144760531 + AluSx SINE Alu 1 311 0 2746 129 65 0 chr4 39528376 39528778 -144759884 - MSTA LTR MaLR 0 428 1 1593 217 20 14 chr4 39528803 39529153 -144759509 - LTR10D LTR ERV1 0 513 162 251 308 88 11 chr4 39529593 39529684 -144758978 + L2 LINE L2 3174 3271 -1 * 274 180 0 101 chr4 39529683 39529772 -144758890 - L2 LINE L2 -173 3099 3020 1853 134 40 3 chr4 39530528 39530827 -144757835 - AluSg SINE Alu 0 310 1 189 350 152 41 chr4 39531134 39531719 -144756943 - L2 LINE L2 -465 2849 2200 971 172 6 18 chr4 39532028 39532191 -144756471 - FRAM SINE Alu -5 161 1 252 0 0 0 chr4 39533710 39533738 -144754924 + (TG)n Simple_repeat Simple_repeat 2 29 0 257 227 55 45 chr4 39533777 39533887 -144754775 - L1MC/D LINE L1 -1921 5887 5777 725 289 179 7 chr4 39534217 39534518 -144754144 - L2 LINE L2 0 3313 2961 707 274 14 28 chr4 39534993 39535208 -144753454 + MIR SINE MIR 40 251 -11 194 91 30 0 chr4 39535209 39535242 -144753420 + (CACCAT)n Simple_repeat Simple_repeat 3 36 0 734 266 51 74 chr4 39535812 39536068 -144752594 + MIR SINE MIR 12 261 -1 404 52 39 26 chr4 39536792 39536806 -144751856 + (GAAA)n Simple_repeat Simple_repeat 3 15 -65 2106 119 13 7 chr4 39536806 39537116 -144751546 + AluSx SINE Alu 1 312 0 404 52 39 26 chr4 39537116 39537178 -144751484 + (GAAA)n Simple_repeat Simple_repeat 15 80 0 234 0 0 0 chr4 39537650 39537676 -144750986 + (CA)n Simple_repeat Simple_repeat 2 27 0 2111 115 3 13 chr4 39538896 39539208 -144749454 - AluSx SINE Alu -3 309 1 2043 86 2 176 chr4 39540266 39540674 -144747988 - MER1B DNA MER1_type 0 337 1 270 139 0 0 chr4 39540750 39540793 -144747869 + L2 LINE L2 3271 3313 0 2472 66 0 10 chr4 39540797 39541101 -144747561 + AluSc SINE Alu 1 301 -8 2235 87 7 7 chr4 39541955 39542244 -144746418 - AluSc SINE Alu -9 300 12 2576 125 28 14 chr4 39542934 39543293 -144745369 + THE1B LTR MaLR 1 364 0 506 262 44 38 chr4 39544320 39544503 -144744159 - MIR SINE MIR -20 242 59 609 172 48 86 chr4 39544581 39544767 -144743895 - MER96B DNA MER1_type? -238 179 1 213 184 0 0 chr4 39544932 39544970 -144743692 + L2 LINE L2 3217 3254 -18 2148 135 0 6 chr4 39544977 39545289 -144743373 + AluSx SINE Alu 1 310 -2 543 248 163 0 chr4 39546040 39546193 -144742469 + MER5A DNA MER1_type 12 189 0 310 172 0 62 chr4 39546407 39546471 -144742191 + MIR SINE MIR 91 150 -58 2276 91 0 7 chr4 39547132 39547430 -144741232 + AluSx SINE Alu 1 296 -16 1656 178 107 67 chr4 39547541 39547990 -144740672 + MLT1C LTR MaLR 1 467 0 244 301 12 12 chr4 39548148 39548231 -144740431 - MARNA DNA Mariner -27 559 477 2336 92 3 0 chr4 39548320 39548626 -144740036 + AluSg SINE Alu 2 308 -2 204 43 43 43 chr4 39548762 39548775 -144739887 + (CAAA)n Simple_repeat Simple_repeat 2 14 -34 2492 70 0 6 chr4 39548775 39549088 -144739574 + AluY SINE Alu 1 311 0 204 43 43 43 chr4 39549088 39549121 -144739541 + (CAAA)n Simple_repeat Simple_repeat 13 48 0 387 242 142 74 chr4 39549819 39549953 -144738709 - MIR SINE MIR -19 243 91 2241 98 7 10 chr4 39549953 39550258 -144738404 + AluSq SINE Alu 1 304 -9 387 242 142 74 chr4 39550258 39550313 -144738349 - MIR SINE MIR -171 91 41 295 307 31 24 chr4 39550420 39550547 -144738115 + L1ME LINE L1 5629 5756 -365 249 108 0 0 chr4 39550736 39550773 -144737889 + (TCCA)n Simple_repeat Simple_repeat 1 37 0 2425 82 0 0 chr4 39552017 39552311 -144736351 + AluSc SINE Alu 1 294 -15 1875 179 0 0 chr4 39552372 39552684 -144735978 + AluJo SINE Alu 1 312 0 249 278 0 0 chr4 39553138 39553192 -144735470 + L2 LINE L2 3230 3283 -30 1062 96 0 84 chr4 39553268 39553435 -144735227 - AluSg/x SINE Alu -84 228 76 209 211 0 0 chr4 39554862 39554900 -144733762 + GA-rich Low_complexity Low_complexity 2 39 0 298 275 44 33 chr4 39555238 39555329 -144733333 - MIR SINE MIR -95 113 22 2195 110 7 13 chr4 39555364 39555672 -144732990 - AluSx SINE Alu -6 306 1 345 313 30 38 chr4 39556495 39556626 -144732036 + L2 LINE L2 3137 3266 -6 25 31 0 0 chr4 39556643 39556675 -144731987 + AT_rich Low_complexity Low_complexity 1 32 0 22 56 0 0 chr4 39556688 39556724 -144731938 + AT_rich Low_complexity Low_complexity 1 36 0 483 260 102 59 chr4 39557144 39557189 -144731473 - L2 LINE L2 -116 3197 3155 2283 82 0 0 chr4 39557189 39557495 -144731167 + AluSg SINE Alu 3 308 0 483 260 102 59 chr4 39557495 39557584 -144731078 - L2 LINE L2 -158 3155 3071 2069 190 3 11 chr4 39557584 39557952 -144730710 + MLT1A1 LTR MaLR 1 365 0 483 260 102 59 chr4 39557952 39558169 -144730493 - L2 LINE L2 -242 3071 2829 229 303 0 64 chr4 39558284 39558393 -144730269 - L2 LINE L2 -226 3046 2945 222 149 0 21 chr4 39558397 39558413 -144730249 + (GA)n Simple_repeat Simple_repeat 2 17 -30 2123 128 0 3 chr4 39558413 39558711 -144729951 + AluSx SINE Alu 1 297 -15 222 149 0 21 chr4 39558711 39558741 -144729921 + (GA)n Simple_repeat Simple_repeat 17 47 0 375 290 26 37 chr4 39558887 39559108 -144729554 + MIR3 SINE MIR 3 212 -50 558 278 21 31 chr4 39560897 39561088 -144727574 - MIR SINE MIR -4 258 70 2455 68 3 0 chr4 39561648 39561944 -144726718 + AluSc SINE Alu 1 297 -12 235 300 0 0 chr4 39562019 39562069 -144726593 - L2 LINE L2 -17 3255 3206 452 246 189 0 chr4 39562515 39562690 -144725972 + MIR SINE MIR 48 255 -7 728 289 71 0 chr4 39562701 39562912 -144725750 + MIR SINE MIR 7 232 -30 2211 92 0 0 chr4 39562929 39563242 -144725420 + AluSc SINE Alu 1 313 0 1682 150 57 21 chr4 39563607 39563887 -144724775 + AluJo SINE Alu 1 290 -22 237 288 0 45 chr4 39564760 39564826 -144723836 - L2 LINE L2 -10 3303 3241 2098 105 11 0 chr4 39564940 39565225 -144723437 - AluSx SINE Alu -7 305 18 1865 114 43 11 chr4 39565327 39565608 -144723054 + AluSx SINE Alu 15 304 -8 2207 103 7 3 chr4 39566321 39566621 -144722041 + AluSg SINE Alu 1 301 -9 2376 96 3 3 chr4 39566842 39567191 -144721471 + AluSx SINE Alu 1 349 0 731 251 46 0 chr4 39567307 39567502 -144721160 + L2 LINE L2 2418 2621 -693 822 243 52 24 chr4 39567604 39567933 -144720729 + LTR16B LTR ERVL 114 451 -13 1033 275 40 29 chr4 39567937 39568486 -144720176 + L2 LINE L2 2614 3156 -157 248 172 54 86 chr4 39568637 39568730 -144719932 + MLT1I LTR MaLR 319 408 -1 2228 114 0 19 chr4 39568737 39569052 -144719610 - AluSx SINE Alu -3 309 1 261 247 14 0 chr4 39569575 39569648 -144719014 + L1MC4a LINE L1 5393 5466 -2342 830 204 105 0 chr4 39569664 39569855 -144718807 - MIR SINE MIR -1 261 51 277 203 43 0 chr4 39569864 39569933 -144718729 + L1MC4a LINE L1 5845 5916 -1892 267 270 20 20 chr4 39569947 39570047 -144718615 + (TATATG)n Simple_repeat Simple_repeat 2 101 0 22 0 0 0 chr4 39571076 39571098 -144717564 + AT_rich Low_complexity Low_complexity 1 22 0 23 68 0 0 chr4 39571228 39571272 -144717390 + AT_rich Low_complexity Low_complexity 1 44 0 224 316 38 0 chr4 39571999 39572078 -144716584 + L2 LINE L2 3178 3259 -13 243 61 0 0 chr4 39572095 39572128 -144716534 + (TGAA)n Simple_repeat Simple_repeat 3 35 0 2180 115 0 0 chr4 39572184 39572479 -144716183 + AluSq SINE Alu 17 311 -2 2194 112 0 13 chr4 39573583 39573888 -144714774 - AluSx SINE Alu -11 301 1 371 214 0 56 chr4 39573940 39574029 -144714633 + MIR SINE MIR 49 132 -130 182 233 23 0 chr4 39574236 39574279 -144714383 + L2 LINE L2 3262 3305 -8 262 323 104 25 chr4 39576495 39576696 -144711966 + MIR SINE MIR 30 246 -16 * 1047 265 4 19 chr4 39576668 39576925 -144711737 - MIR SINE MIR -4 258 6 1989 109 3 42 chr4 39577412 39577724 -144710938 + AluSx SINE Alu 1 300 -12 4192 158 7 40 chr4 39578047 39578795 -144709867 - L1MB3 LINE L1 0 6183 5461 616 129 2 0 chr4 39578822 39578922 -144709740 - L1P2 LINE L1 -674 5480 5379 22 35 0 0 chr4 39578924 39578953 -144709709 + AT_rich Low_complexity Low_complexity 1 29 0 707 282 97 63 chr4 39579510 39579890 -144708772 + LTR16A LTR ERVL 52 444 -6 261 188 0 0 chr4 39579898 39579946 -144708716 - L1MC/D LINE L1 -1977 5831 5784 411 127 64 13 chr4 39579947 39580104 -144708558 + (TA)n Simple_repeat Simple_repeat 1 165 0 1755 140 4 29 chr4 39581029 39581307 -144707355 - AluSx SINE Alu -1 311 41 187 255 0 20 chr4 39581695 39581746 -144706916 - L3 LINE CR1 -1 1576 1527 * 249 286 39 118 chr4 39581716 39581894 -144706768 - MIR3 SINE MIR -25 183 20 1859 153 72 3 chr4 39583039 39583360 -144705302 + MER7A DNA MER2_type 6 346 0 1517 236 58 28 chr4 39583367 39583799 -144704863 + MLT1E1 LTR MaLR 20 464 -190 715 187 59 53 chr4 39584038 39584225 -144704437 + MLT1E1 LTR MaLR 467 654 0 2310 117 0 0 chr4 39584815 39585123 -144703539 - AluSx SINE Alu -4 308 1 29 0 0 0 chr4 39586548 39586577 -144702085 + AT_rich Low_complexity Low_complexity 1 29 0 494 253 141 30 chr4 39586851 39587049 -144701613 + MIR SINE MIR 1 220 -42 424 238 0 0 chr4 39588170 39588254 -144700408 + L2 LINE L2 3227 3310 -3 204 40 0 0 chr4 39588441 39588466 -144700196 + (GGAA)n Simple_repeat Simple_repeat 2 26 0 2240 97 10 0 chr4 39588581 39588880 -144699782 - AluY SINE Alu -9 302 1 436 309 141 49 chr4 39588889 39589258 -144699404 + MLT1J LTR MaLR 109 511 0 465 266 72 99 chr4 39589270 39589533 -144699129 + MIR SINE MIR 2 257 -5 1732 175 24 17 chr4 39590466 39590763 -144697899 - AluJo SINE Alu -13 299 1 2262 103 0 0 chr4 39592059 39592359 -144696303 - AluSx SINE Alu -12 300 1 317 275 74 69 chr4 39592666 39592687 -144695975 + L2 LINE L2 1779 1798 -1516 2368 84 3 0 chr4 39592687 39592985 -144695677 + AluSx SINE Alu 1 299 -13 317 275 74 69 chr4 39592985 39593152 -144695510 + L2 LINE L2 1798 1968 -1346 1711 158 0 4 chr4 39593590 39593855 -144694807 + AluJo SINE Alu 10 273 -39 2066 143 3 0 chr4 39593883 39594191 -144694471 + AluSx SINE Alu 1 309 -3 297 302 148 16 chr4 39594678 39594867 -144693795 + L2 LINE L2 2129 2342 -972 803 145 15 0 chr4 39594870 39595001 -144693661 + FLAM_C SINE Alu 1 133 -10 562 309 16 16 chr4 39595069 39595257 -144693405 + MER5A DNA MER1_type 2 189 0 221 250 62 0 chr4 39595258 39595322 -144693340 + L2 LINE L2 2398 2465 -849 244 372 0 81 chr4 39595834 39595982 -144692680 + L2 LINE L2 3040 3175 -97 196 133 44 44 chr4 39596016 39596061 -144692601 - MIR3 SINE MIR -19 189 145 227 274 68 0 chr4 39596064 39596137 -144692525 + L3 LINE CR1 1466 1543 -34 2398 79 3 0 chr4 39596518 39596810 -144691852 - AluSp SINE Alu -20 293 1 2907 10 0 0 chr4 39596816 39597127 -144691535 - AluYb8 SINE Alu -7 311 1 287 365 10 0 chr4 39597446 39597542 -144691120 + L3b LINE CR1 1402 1498 -85 2175 83 6 61 chr4 39597941 39598254 -144690408 - AluSx SINE Alu -16 296 1 236 303 26 13 chr4 39598496 39598572 -144690090 + MIR SINE MIR 21 97 -165 535 221 71 9 chr4 39598866 39598979 -144689683 + MER5B DNA MER1_type 7 126 -52 792 59 0 0 chr4 39598979 39599081 -144689581 + (CTATT)n Simple_repeat Simple_repeat 4 105 0 1206 159 20 10 chr4 39599083 39599284 -144689378 - AluJb SINE Alu -23 289 87 228 279 0 16 chr4 39599284 39599345 -144689317 + MER5B DNA MER1_type 119 178 0 329 292 80 29 chr4 39599444 39599581 -144689081 - L3 LINE CR1 -44 1533 1390 225 370 55 30 chr4 39599635 39599800 -144688862 - MIR3 SINE MIR -8 200 32 318 329 99 14 chr4 39600311 39600524 -144688138 + MIR SINE MIR 32 262 0 2484 64 3 0 chr4 39601177 39601474 -144687188 - AluSp SINE Alu -15 298 1 3718 113 25 25 chr4 39601515 39602039 -144686623 + MER1A DNA MER1_type 4 527 0 2172 198 33 25 chr4 39602047 39602531 -144686131 + MLT1D LTR MaLR 16 503 -2 2207 122 6 3 chr4 39602686 39602997 -144685665 + AluSx SINE Alu 1 312 0 268 229 0 0 chr4 39603260 39603308 -144685354 + MER3 DNA MER1_type 1 48 -161 6992 194 17 9 chr4 39603308 39604791 -144683871 + L1P4 LINE L1 3961 5455 -710 341 251 368 0 chr4 39604859 39605022 -144683640 - MIR SINE MIR -3 259 37 283 315 27 45 chr4 39605644 39605755 -144682907 + L2 LINE L2 3197 3305 -8 955 205 17 60 chr4 39606216 39606450 -144682212 + MER58A DNA MER1_type 1 224 0 42 71 0 0 chr4 39607651 39607735 -144680927 + AT_rich Low_complexity Low_complexity 1 84 0 1993 150 23 7 chr4 39607773 39608080 -144680582 + AluSx SINE Alu 1 312 0 22 35 0 0 chr4 39611219 39611248 -144677414 + GC_rich Low_complexity Low_complexity 1 29 0 30 109 0 0 chr4 39611343 39611471 -144677191 + GC_rich Low_complexity Low_complexity 1 128 0 495 328 65 4 chr4 39611758 39612005 -144676657 + L1ME LINE L1 5561 5822 -299 58 24 0 12 chr4 39612589 39612618 -144676044 + AT_rich Low_complexity Low_complexity 1 29 -53 2235 82 7 14 chr4 39612618 39612909 -144675753 - AluSx SINE Alu -23 289 1 58 24 0 12 chr4 39612909 39612962 -144675700 + AT_rich Low_complexity Low_complexity 29 82 0 1933 125 55 3 chr4 39612973 39613262 -144675400 - AluSx SINE Alu -8 304 1 185 282 127 14 chr4 39613391 39613462 -144675200 + MIR3 SINE MIR 113 191 -17 1677 191 10 3 chr4 39614090 39614389 -144674273 - AluJo SINE Alu -11 301 1 263 301 98 22 chr4 39614503 39614686 -144673976 - L1ME LINE L1 -299 5871 5675 3321 258 141 79 chr4 39614759 39616224 -144672438 - L2 LINE L2 -3 3310 1938 2408 99 0 0 chr4 39616224 39616528 -144672134 + AluY SINE Alu 1 304 -7 1911 155 0 7 chr4 39616538 39616835 -144671827 + AluSx SINE Alu 1 295 -17 3321 258 141 79 chr4 39616835 39618126 -144670536 - L2 LINE L2 -1383 1930 354 189 151 57 38 chr4 39618155 39618208 -144670454 - MER5B DNA MER1_type -27 151 98 647 252 26 41 chr4 39618209 39618580 -144670082 - L1ME LINE L1 -615 5549 5188 2301 99 0 0 chr4 39618636 39618929 -144669733 - AluSx SINE Alu -19 293 1 183 42 0 0 chr4 39619019 39619043 -144669619 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 206 170 0 21 chr4 39619250 39619297 -144669365 + CT-rich Low_complexity Low_complexity 1 46 0 6284 145 23 17 chr4 39619303 39621205 -144667457 - L1MA4 LINE L1 -21 6921 5009 2218 126 0 3 chr4 39621205 39621514 -144667148 - AluSx SINE Alu -4 308 1 9049 202 40 36 chr4 39621515 39623922 -144664740 - L1MA4 LINE L1 -2472 4316 1764 2071 118 0 36 chr4 39623922 39624226 -144664436 - AluSq SINE Alu -20 293 1 9049 202 40 36 chr4 39624226 39625981 -144662681 - L1MA4 LINE L1 -5024 1764 17 2951 199 22 17 chr4 39625993 39627122 -144661540 - L1MC2 LINE L1 -517 5827 4697 301 134 104 0 chr4 39627122 39627189 -144661473 - L1M4c LINE L1 -5507 1139 1066 1980 227 41 98 chr4 39627341 39627432 -144661230 - L1M4c LINE L1 -5475 1067 972 207 0 0 0 chr4 39627432 39627455 -144661207 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1761 164 4 4 chr4 39627458 39627738 -144660924 - AluJb SINE Alu -32 280 1 1980 227 41 98 chr4 39627738 39628450 -144660212 - L1M4c LINE L1 -5572 970 322 227 231 19 0 chr4 39632188 39632240 -144656422 + L2 LINE L2 3261 3313 0 2165 125 0 10 chr4 39633074 39633378 -144655284 + AluSx SINE Alu 1 301 -11 239 173 0 19 chr4 39633565 39633617 -144655045 + (CAA)n Simple_repeat Simple_repeat 2 52 0 422 300 68 46 chr4 39633727 39634007 -144654655 + L2 LINE L2 3028 3313 0 23 0 0 0 chr4 39634074 39634097 -144654565 + GC_rich Low_complexity Low_complexity 1 23 0 225 164 73 0 chr4 39634456 39634511 -144654151 + A-rich Low_complexity Low_complexity 2 60 0 5747 118 101 72 chr4 39634738 39634974 -144653688 - Tigger3b DNA MER2_type -1824 1204 976 2290 131 48 14 chr4 39634974 39635326 -144653336 + THE1B LTR MaLR 1 364 0 5747 118 101 72 chr4 39635326 39635778 -144652884 - Tigger3b DNA MER2_type -2052 976 539 183 42 0 0 chr4 39635778 39635802 -144652860 + (CA)n Simple_repeat Simple_repeat 2 25 0 5747 118 101 72 chr4 39635802 39636282 -144652380 - Tigger3b DNA MER2_type -2489 539 1 1159 197 150 8 chr4 39636282 39636515 -144652147 - MLT1A1 LTR MaLR -32 333 68 497 234 11 0 chr4 39636515 39636609 -144652053 + MER2 DNA MER2_type 1 95 -250 1121 185 45 0 chr4 39636612 39636812 -144651850 + AluJo SINE Alu 85 293 -19 881 169 97 68 chr4 39636812 39637060 -144651602 + MER2 DNA MER2_type 91 345 0 415 127 0 28 chr4 39637060 39637131 -144651531 - MLT1A1 LTR MaLR -296 69 1 1234 167 23 5 chr4 39637347 39637568 -144651094 - MLT1C LTR MaLR 0 467 243 498 221 44 108 chr4 39637818 39638067 -144650595 - MLT1C LTR MaLR -229 238 6 347 246 36 96 chr4 39638844 39639011 -144649651 - MLT1J LTR MaLR 0 511 355 185 204 0 23 chr4 39639868 39639912 -144648750 - L2 LINE L2 -1792 1522 1480 22 0 0 0 chr4 39639954 39639976 -144648686 + AT_rich Low_complexity Low_complexity 1 22 0 2319 107 3 0 chr4 39639980 39640289 -144648373 + AluSp SINE Alu 1 310 -3 458 235 25 101 chr4 39640323 39640561 -144648101 + L1ME4a LINE L1 5696 5915 -206 26 0 0 0 chr4 39640744 39640770 -144647892 + AT_rich Low_complexity Low_complexity 1 26 0 2109 137 3 0 chr4 39640973 39641266 -144647396 + AluSq SINE Alu 1 294 -19 31 26 0 0 chr4 39641266 39641304 -144647358 + AT_rich Low_complexity Low_complexity 1 38 0 354 250 12 0 chr4 39641326 39641406 -144647256 - MER63 DNA MER1_type -311 751 671 2140 168 28 14 chr4 39641481 39641844 -144646818 + MSTA LTR MaLR 61 428 0 9742 156 35 2 chr4 39641844 39643442 -144645220 + MSTA-int LTR MaLR 1 1651 0 2215 162 43 24 chr4 39643442 39643862 -144644800 + MSTA LTR MaLR 1 428 0 507 299 78 0 chr4 39643863 39644220 -144644442 + L1ME LINE L1 5285 5701 -420 1922 187 85 54 chr4 39644635 39644805 -144643857 + L1MB8 LINE L1 3943 4106 -2040 1582 183 3 40 chr4 39644805 39645105 -144643557 - AluJo SINE Alu -23 289 1 1922 187 85 54 chr4 39645105 39645254 -144643408 + L1MB8 LINE L1 4106 4249 -1897 1501 205 57 17 chr4 39645254 39645605 -144643057 - MLT1A1 LTR MaLR 0 365 1 1922 187 85 54 chr4 39645605 39645861 -144642801 + L1MB8 LINE L1 4249 4537 -1609 1037 119 0 7 chr4 39645861 39646004 -144642658 - AluSg/x SINE Alu -8 302 161 269 204 0 0 chr4 39646004 39646053 -144642609 + L1MB8 LINE L1 5510 5558 -622 540 222 9 0 chr4 39646057 39646165 -144642497 + LTR47A LTR ERVL 6 114 -338 292 234 0 0 chr4 39646238 39646302 -144642360 - HERVL18 LTR ERVL -4723 1324 1261 2193 150 62 36 chr4 39646368 39646789 -144641873 - MER66B LTR ERV1 -54 432 1 328 197 53 0 chr4 39647573 39647649 -144641013 + MER4B-int LTR ERV1 5996 6075 -683 1750 211 6 64 chr4 39647650 39648120 -144640542 + LTR47B LTR ERVL 1 443 0 2975 154 76 36 chr4 39648120 39648722 -144639940 + L1MB8 LINE L1 5553 6178 0 887 175 118 5 chr4 39648940 39649158 -144639504 + MER33 DNA MER1_type 1 219 -105 230 241 19 0 chr4 39649297 39649351 -144639311 - MIR SINE MIR -195 67 13 352 200 18 9 chr4 39649353 39649468 -144639194 - L1ME LINE L1 -5182 888 782 6813 75 13 46 chr4 39649480 39651365 -144637297 - SVA Other Other -518 1379 1 2070 133 0 3 chr4 39651519 39651852 -144636810 - AluSx SINE Alu 0 332 1 236 227 0 0 chr4 39653455 39653499 -144635163 + MLT1J1 LTR MaLR 109 152 -294 247 259 74 25 chr4 39653500 39653581 -144635081 + MLT1J1 LTR MaLR 126 210 -236 476 346 91 5 chr4 39653728 39653936 -144634726 + MER115 DNA AcHobo 201 426 -267 600 185 9 0 chr4 39653966 39654074 -144634588 + MER115 DNA AcHobo 489 597 -96 2114 128 0 3 chr4 39654097 39654394 -144634268 - AluSx SINE Alu -16 296 1 1137 123 6 12 chr4 39654425 39654587 -144634075 - AluSx SINE Alu -151 161 1 983 147 21 32 chr4 39654624 39654814 -144633848 - MER53 DNA DNA 0 189 2 380 271 41 25 chr4 39654871 39654993 -144633669 + MLT1J2 LTR MaLR 268 391 -59 2287 93 3 26 chr4 39655016 39655329 -144633333 - AluSp SINE Alu -7 306 1 500 196 131 26 chr4 39655717 39655870 -144632792 - MIR SINE MIR -15 247 79 2179 101 17 0 chr4 39655915 39656075 -144632587 - AluSx SINE Alu -19 293 124 351 0 0 0 chr4 39656075 39656114 -144632548 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2179 101 17 0 chr4 39656114 39656241 -144632421 - AluSx SINE Alu -188 124 1 1356 229 70 11 chr4 39656247 39656446 -144632216 + LTR37A LTR ERV1 34 220 -206 2896 51 19 3 chr4 39656446 39656816 -144631846 - L1PA7 LINE L1 -3 6151 5776 1356 229 70 11 chr4 39656816 39656987 -144631675 + LTR37A LTR ERV1 220 426 0 450 0 0 0 chr4 39657469 39657519 -144631143 + (CA)n Simple_repeat Simple_repeat 2 51 0 1586 132 0 0 chr4 39658070 39658289 -144630373 - AluSq SINE Alu -94 219 1 274 232 311 7 chr4 39658395 39658546 -144630116 - MIR SINE MIR -30 232 36 270 305 33 60 chr4 39660403 39660554 -144628108 + L2 LINE L2 3166 3312 -1 596 271 84 35 chr4 39661285 39661498 -144627164 - L1ME4a LINE L1 -3 6118 5917 2571 26 7 17 chr4 39661498 39661800 -144626862 - AluY SINE Alu -12 299 1 596 271 84 35 chr4 39661800 39662196 -144626466 - L1ME4a LINE L1 -204 5917 5445 191 179 26 0 chr4 39662217 39662256 -144626406 + L2 LINE L2 1695 1734 -1580 252 253 38 13 chr4 39662448 39662527 -144626135 - L1MC4 LINE L1 -339 7703 7623 672 212 75 14 chr4 39662960 39663106 -144625556 + FRAM SINE Alu 1 155 -11 231 304 37 25 chr4 39663166 39663327 -144625335 - L1ME4a LINE L1 -1869 4277 4115 41578 53 11 1 chr4 39663335 39669301 -144619361 - L1PA5 LINE L1 0 6154 131 420 303 165 42 chr4 39770640 39771046 -144517616 + L2 LINE L2 2804 3259 -54 210 304 54 11 chr4 39771976 39772068 -144516594 - MER5A DNA MER1_type -26 163 68 875 135 7 14 chr4 39772229 39772377 -144516285 + AluY SINE Alu 1 147 -164 727 152 8 0 chr4 39772590 39772715 -144515947 + AluSg/x SINE Alu 180 305 -4 1176 210 56 0 chr4 39773442 39773747 -144514915 + MER33 DNA MER1_type 3 324 0 1493 96 5 10 chr4 39773922 39774130 -144514532 + AluSg/x SINE Alu 88 294 -18 1186 209 35 26 chr4 39774274 39774893 -144513769 + L1ME2 LINE L1 5326 6047 -117 526 146 0 0 chr4 39774904 39774986 -144513676 - AluS SINE Alu -228 85 4 314 147 15 0 chr4 39774988 39775056 -144513606 + L1MA10 LINE L1 6264 6332 -2 207 338 39 0 chr4 39775136 39775213 -144513449 + MIR3 SINE MIR 4 83 -125 26 0 0 27 chr4 39775476 39775495 -144513167 + AT_rich Low_complexity Low_complexity 1 20 -16 699 162 0 63 chr4 39775495 39775637 -144513025 + AluJo SINE Alu 1 133 -169 26 0 0 27 chr4 39775637 39775654 -144513008 + AT_rich Low_complexity Low_complexity 20 36 0 207 0 0 0 chr4 39775665 39775688 -144512974 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1502 107 0 0 chr4 39775710 39775906 -144512756 + AluSg1 SINE Alu 1 196 -113 225 152 0 0 chr4 39775907 39775953 -144512709 + AluSg1 SINE Alu 263 308 0 222 171 0 0 chr4 39775976 39776017 -144512645 + A-rich Low_complexity Low_complexity 1 41 0 948 184 19 0 chr4 39776031 39776189 -144512473 + AluJo SINE Alu 129 289 -23 1725 150 13 19 chr4 39776267 39776581 -144512081 - AluJo SINE Alu 0 312 1 2860 116 29 26 chr4 39777052 39777542 -144511120 - L1PB4 LINE L1 0 6156 5666 321 302 133 43 chr4 39777808 39778109 -144510553 + L2 LINE L2 2043 2370 -944 216 322 70 61 chr4 39778168 39778649 -144510013 + L2 LINE L2 2549 3096 -176 509 277 60 0 chr4 39778700 39778866 -144509796 + MIR SINE MIR 70 245 -17 285 331 153 37 chr4 39778860 39779023 -144509639 + L2 LINE L2 3091 3272 0 * 195 222 0 0 chr4 39779023 39779068 -144509594 + (TGGA)n Simple_repeat Simple_repeat 2 46 0 947 193 13 75 chr4 39779134 39779276 -144509386 - MER58A DNA MER1_type -2196 224 101 2209 98 0 16 chr4 39779276 39779583 -144509079 + AluY SINE Alu 1 302 -9 947 193 13 75 chr4 39779583 39779679 -144508983 - MER58A DNA MER1_type -2319 101 1 1673 142 0 15 chr4 39780588 39780848 -144507814 + AluSx SINE Alu 1 256 -56 883 110 0 0 chr4 39780851 39780969 -144507693 + AluSg/x SINE Alu 187 304 -8 712 200 14 0 chr4 39781249 39781389 -144507273 - MIR SINE MIR -7 255 114 654 274 112 19 chr4 39781545 39781760 -144506902 + MIR SINE MIR 2 236 -26 958 170 35 0 chr4 39781875 39782046 -144506616 + MER2 DNA MER2_type 169 345 0 740 125 86 7 chr4 39782263 39782415 -144506247 + MER33 DNA MER1_type 26 189 -135 1104 92 20 0 chr4 39782415 39782568 -144506094 + L1P4 LINE L1 5439 5594 -574 547 131 25 16 chr4 39782568 39782690 -144505972 + MER33 DNA MER1_type 201 323 -1 1043 169 48 11 chr4 39782710 39782899 -144505763 - MIR SINE MIR -65 197 2 462 266 8 31 chr4 39782966 39783094 -144505568 - MIR SINE MIR -17 245 121 418 133 0 24 chr4 39783556 39783639 -144505023 + (GGAAA)n Simple_repeat Simple_repeat 4 84 0 2181 102 0 52 chr4 39784739 39785063 -144503599 + AluSg SINE Alu 1 307 -3 21 36 0 0 chr4 39785219 39785247 -144503415 + AT_rich Low_complexity Low_complexity 1 28 0 1316 225 111 20 chr4 39785269 39785766 -144502896 + L1M4 LINE L1 4319 4860 -1286 2261 90 0 40 chr4 39785793 39786116 -144502546 + AluSg SINE Alu 1 310 0 769 155 46 11 chr4 39786142 39786316 -144502346 - L1MB8 LINE L1 -1 6177 5998 1373 129 63 14 chr4 39786316 39786730 -144501932 + L1MD1 LINE L1 5751 6240 -2 2025 179 65 4 chr4 39786762 39787220 -144501442 + L1M4 LINE L1 4872 5357 -789 28777 33 5 3 chr4 39787328 39791747 -144496915 + L1PA4 LINE L1 1730 6151 -4 30 0 0 0 chr4 39791747 39791777 -144496885 + AT_rich Low_complexity Low_complexity 1 30 0 603 257 73 30 chr4 39792632 39792850 -144495812 + MIR SINE MIR 37 262 0 27 62 0 0 chr4 39793070 39793118 -144495544 + AT_rich Low_complexity Low_complexity 1 48 0 872 166 0 20 chr4 39793134 39793285 -144495377 - MER106B DNA MER1_type -910 149 2 1733 145 20 44 chr4 39793801 39794098 -144494564 - AluJo SINE Alu -22 290 1 662 242 50 6 chr4 39794121 39794282 -144494380 - HsTC2 DNA Tc2 -1012 886 719 5184 112 66 2 chr4 39794289 39794945 -144493717 + L1PB4 LINE L1 5126 5864 -292 237 33 0 0 chr4 39794945 39794975 -144493687 + (CA)n Simple_repeat Simple_repeat 2 31 0 5184 112 66 2 chr4 39794975 39795276 -144493386 + L1PB4 LINE L1 5864 6144 -12 410 309 48 19 chr4 39795303 39795510 -144493152 - HsTC2 DNA Tc2 -1171 727 515 1598 192 0 24 chr4 39795947 39796244 -144492418 + AluJo SINE Alu 3 292 -20 244 179 13 64 chr4 39797372 39797450 -144491212 - MIR SINE MIR -123 139 66 2240 92 0 3 chr4 39797640 39797944 -144490718 - AluSg SINE Alu 0 303 1 1080 77 7 0 chr4 39798209 39798352 -144490310 + L1PA10 LINE L1 6019 6162 -6 1984 138 3 16 chr4 39798568 39798872 -144489790 + AluJb SINE Alu 9 308 -4 33 25 0 0 chr4 39798886 39798926 -144489736 + AT_rich Low_complexity Low_complexity 1 40 0 2179 112 0 20 chr4 39799339 39799642 -144489020 + AluSg SINE Alu 1 297 -13 1547 129 4 4 chr4 39799955 39800180 -144488482 + AluSg/x SINE Alu 75 299 -13 2061 125 26 0 chr4 39800190 39800495 -144488167 + AluSq SINE Alu 1 313 0 1195 149 9 167 chr4 39800743 39801091 -144487571 - AluJo SINE Alu -9 293 1 265 203 39 12 chr4 39801099 39801208 -144487454 - L1MC/D LINE L1 -303 5818 5704 669 154 12 118 chr4 39801209 39801332 -144487330 + AluJo SINE Alu 1 103 -209 1966 144 7 7 chr4 39801332 39801637 -144487025 - AluSx SINE Alu -7 305 1 669 154 12 118 chr4 39801637 39801682 -144486980 + AluJo SINE Alu 103 151 -161 326 155 0 52 chr4 39801682 39801740 -144486922 + Alu SINE Alu 235 289 -13 37 39 0 0 chr4 39801747 39801798 -144486864 + AT_rich Low_complexity Low_complexity 1 51 0 425 284 84 55 chr4 39801882 39802192 -144486470 - L1MC/D LINE L1 -2199 5609 5291 904 173 130 0 chr4 39802225 39802410 -144486252 - MER3 DNA MER1_type 0 209 1 21 36 0 0 chr4 39802621 39802649 -144486013 + AT_rich Low_complexity Low_complexity 1 28 0 2133 95 19 35 chr4 39803595 39803910 -144484752 - AluSx SINE Alu -2 310 1 234 236 24 79 chr4 39804624 39804789 -144483873 + L1M LINE L1 5255 5410 -2398 830 164 0 0 chr4 39804893 39805027 -144483635 + AluJo SINE Alu 1 134 -178 19307 51 2 1 chr4 39805037 39807427 -144481235 + L1P LINE L1 1 2391 -3755 2250 122 3 0 chr4 39807579 39807891 -144480771 + AluSq SINE Alu 1 313 0 2331 97 0 0 chr4 39808520 39808820 -144479842 + AluY SINE Alu 1 300 -11 700 148 19 143 chr4 39809816 39810026 -144478636 + FAM SINE Alu 1 49 0 930 177 13 6 chr4 39810138 39810296 -144478366 - AluJb SINE Alu -18 294 136 2287 108 0 3 chr4 39810298 39810605 -144478057 - AluSx SINE Alu -6 306 1 481 275 27 54 chr4 39811414 39811563 -144477099 - MLT1K LTR MaLR -91 497 353 325 173 123 49 chr4 39811839 39811920 -144476742 + MIR SINE MIR 65 151 -111 1156 245 43 79 chr4 39813644 39813840 -144474822 - LTR16B LTR ERVL -8 456 254 230 0 33 0 chr4 39813840 39813870 -144474792 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 1933 103 33 0 chr4 39813872 39814143 -144474519 - AluSq SINE Alu -33 280 1 1156 245 43 79 chr4 39814143 39814412 -144474250 - LTR16B LTR ERVL -211 253 5 2344 98 7 0 chr4 39814533 39814839 -144473823 - AluSg SINE Alu -2 308 1 498 269 28 46 chr4 39814990 39815118 -144473544 - L1MC4 LINE L1 -1040 7002 6878 863 203 39 0 chr4 39815118 39815300 -144473362 - MER5A DNA MER1_type 0 189 1 498 269 28 46 chr4 39815300 39815387 -144473275 - L1MC4 LINE L1 -1164 6878 6791 2254 99 0 3 chr4 39816479 39816781 -144471881 + AluSg SINE Alu 8 308 -2 2051 263 132 6 chr4 39817588 39818292 -144470370 + L2 LINE L2 2153 2945 -369 263 343 50 30 chr4 39818284 39818383 -144470279 - L2 LINE L2 -4 3268 3168 * 733 244 83 65 chr4 39818413 39818533 -144470129 - MIR SINE MIR -21 241 125 2149 123 16 7 chr4 39818533 39818842 -144469820 + AluSx SINE Alu 1 312 0 733 244 83 65 chr4 39818842 39818951 -144469711 - MIR SINE MIR -137 125 8 1863 159 3 17 chr4 39819228 39819529 -144469133 - AluJb SINE Alu -15 297 1 2395 58 0 10 chr4 39819664 39819957 -144468705 + AluY SINE Alu 1 290 -21 1845 162 3 7 chr4 39819971 39820105 -144468557 + AluJb SINE Alu 1 134 -178 2329 100 7 0 chr4 39820105 39820405 -144468257 + AluSx SINE Alu 1 302 -10 1845 162 3 7 chr4 39820405 39820567 -144468095 + AluJb SINE Alu 134 296 -16 186 353 0 0 chr4 39821576 39821627 -144467035 - L2 LINE L2 -17 3255 3205 1750 229 91 47 chr4 39821647 39822206 -144466456 - MLT1E LTR MaLR 0 593 10 573 284 62 46 chr4 39822526 39822832 -144465830 - MLT1J LTR MaLR -130 381 71 494 316 31 31 chr4 39823039 39823232 -144465430 - MER117 DNA MER1_type -3 194 2 854 248 81 22 chr4 39823326 39823700 -144464962 - L1MEd LINE L1 -4814 1315 935 1260 227 106 12 chr4 39823747 39824077 -144464585 + L1MC/D LINE L1 5328 5688 -2120 27 0 0 0 chr4 39824147 39824174 -144464488 + AT_rich Low_complexity Low_complexity 1 27 0 683 307 89 22 chr4 39824184 39824454 -144464208 - L1MEd LINE L1 -5348 771 484 936 126 86 7 chr4 39824497 39824648 -144464014 - FRAM SINE Alu 0 166 4 505 310 39 0 chr4 39824745 39824948 -144463714 - L1MEd LINE L1 -5903 216 6 25 31 0 0 chr4 39825390 39825422 -144463240 + AT_rich Low_complexity Low_complexity 1 32 0 2369 92 3 0 chr4 39825466 39825772 -144462890 - AluSp SINE Alu -6 307 1 272 286 41 35 chr4 39825784 39825955 -144462707 + MER104 DNA Tc2 6 177 -3 198 250 0 0 chr4 39826808 39826848 -144461814 + L2 LINE L2 3255 3294 -19 366 339 76 35 chr4 39827309 39827625 -144461037 + L1MD2 LINE L1 1 329 -6211 3636 237 144 11 chr4 39828174 39829691 -144458971 + L1MD2 LINE L1 917 2615 -3925 2341 94 13 0 chr4 39829691 39829990 -144458672 - AluSx SINE Alu -9 303 1 3636 237 144 11 chr4 39829990 39830110 -144458552 + L1MD2 LINE L1 2615 2718 -3822 1109 145 5 16 chr4 39830149 39830335 -144458327 - MER2 DNA MER2_type -161 184 1 4373 231 57 21 chr4 39830335 39830901 -144457761 + L1MD2 LINE L1 2958 3503 -3037 1648 97 5 0 chr4 39830901 39831117 -144457545 + AluSg/x SINE Alu 82 298 -12 4373 231 57 21 chr4 39831117 39831786 -144456876 + L1MD2 LINE L1 3503 4250 -2290 1716 167 31 10 chr4 39831786 39832080 -144456582 + AluJo SINE Alu 2 301 -11 4373 231 57 21 chr4 39832080 39832237 -144456425 + L1MD2 LINE L1 4250 4400 -2140 1033 160 151 10 chr4 39832242 39832448 -144456214 + AluSg SINE Alu 1 235 -75 1059 108 0 0 chr4 39832452 39832591 -144456071 + AluJb SINE Alu 157 295 -17 3096 279 68 67 chr4 39832591 39833273 -144455389 + L1MD2 LINE L1 4399 5084 -1456 525 55 0 0 chr4 39833273 39833346 -144455316 + (GA)n Simple_repeat Simple_repeat 2 74 0 3096 279 68 67 chr4 39833346 39833860 -144454802 + L1MD2 LINE L1 5084 5596 -944 754 154 0 0 chr4 39833861 39833978 -144454684 + AluSq/x SINE Alu 1 117 -195 470 218 18 0 chr4 39833994 39834104 -144454558 + L1MD2 LINE L1 5579 5690 -850 340 257 66 37 chr4 39834104 39834240 -144454422 - L1MEc LINE L1 -4466 1930 1791 5412 163 52 21 chr4 39834245 39835282 -144453380 + L1MD2 LINE L1 5677 6745 -8 2322 100 0 0 chr4 39836125 39836424 -144452238 - AluSx SINE Alu -13 299 1 231 180 0 0 chr4 39836666 39836716 -144451946 - Alu SINE Alu 0 302 253 * 1767 148 0 0 chr4 39836715 39836979 -144451683 + Tigger3(Golem) DNA MER2_type 2775 3038 0 23 33 0 0 chr4 39837379 39837409 -144451253 + AT_rich Low_complexity Low_complexity 1 30 0 500 274 86 86 chr4 39837764 39838019 -144450643 + MIR SINE MIR 2 256 -6 22 99 0 0 chr4 39838309 39838380 -144450282 + AT_rich Low_complexity Low_complexity 1 71 0 2308 104 0 3 chr4 39839607 39839906 -144448756 + AluSx SINE Alu 2 299 -13 1510 149 65 7 chr4 39840731 39841006 -144447656 - L1MB4 LINE L1 0 6180 5890 490 250 153 53 chr4 39842527 39842755 -144445907 - Charlie8 DNA MER1_type -2152 265 15 240 348 22 44 chr4 39843182 39843317 -144445345 + L2 LINE L2 3141 3272 0 576 298 34 10 chr4 39843721 39843929 -144444733 - L1MC5 LINE L1 -47 7914 7702 2229 222 27 35 chr4 39843936 39844268 -144444394 - L1ME3 LINE L1 -2 6160 5832 2289 85 10 0 chr4 39844268 39844561 -144444101 - AluSq SINE Alu -17 296 1 2229 222 27 35 chr4 39844561 39844777 -144443885 - L1ME3 LINE L1 -330 5832 5616 1570 216 69 44 chr4 39844777 39844951 -144443711 - L1ME3 LINE L1 -878 5268 5100 1864 122 0 0 chr4 39844951 39845205 -144443457 + AluSq SINE Alu 56 309 -4 1570 216 69 44 chr4 39845205 39845534 -144443128 - L1ME3 LINE L1 -1046 5100 4752 2412 156 71 4 chr4 39845552 39846002 -144442660 - L1MB7 LINE L1 -220 5964 5485 462 259 25 25 chr4 39845978 39846136 -144442526 - L1MC5 LINE L1 -302 7659 7502 * 183 80 0 0 chr4 39846153 39846178 -144442484 + (TC)n Simple_repeat Simple_repeat 2 26 0 549 222 151 16 chr4 39846223 39846408 -144442254 - L1MC5 LINE L1 -492 7469 7260 2260 118 0 10 chr4 39846437 39846750 -144441912 - AluSx SINE Alu -2 310 1 1031 191 206 65 chr4 39846761 39847086 -144441576 - MLT1A2 LTR MaLR 0 374 4 1617 105 56 49 chr4 39847135 39847401 -144441261 - AluSq SINE Alu -45 268 1 234 276 0 0 chr4 39847475 39847533 -144441129 - L1MC4 LINE L1 -787 7255 7198 433 41 0 0 chr4 39847534 39847583 -144441079 + MER30 DNA MER1_type 3 51 -179 250 292 11 22 chr4 39847633 39847722 -144440940 - MLT1K LTR MaLR -362 226 139 483 276 64 13 chr4 39848145 39848301 -144440361 - MIR3 SINE MIR -3 205 42 1667 144 59 0 chr4 39848380 39848650 -144440012 - AluJo SINE Alu -26 286 1 218 154 103 0 chr4 39848910 39848949 -144439713 + L2 LINE L2 3222 3264 -8 307 335 74 4 chr4 39849324 39849581 -144439081 + L2 LINE L2 1830 2104 -1210 2422 81 3 0 chr4 39849753 39850050 -144438612 + AluSp SINE Alu 1 298 -15 381 211 0 0 chr4 39850114 39850190 -144438472 - MER53 DNA DNA -113 76 1 613 276 133 0 chr4 39850199 39850395 -144438267 - MIR SINE MIR -39 223 2 2198 118 0 3 chr4 39851032 39851329 -144437333 - AluSx SINE Alu -16 296 1 202 333 42 0 chr4 39851333 39851405 -144437257 + L2 LINE L2 2226 2300 -1014 2425 93 0 0 chr4 39851602 39851903 -144436759 + AluSc SINE Alu 1 301 -8 1727 103 22 0 chr4 39852386 39852609 -144436053 + MER30 DNA MER1_type 1 228 -2 2285 109 3 0 chr4 39852913 39853217 -144435445 + AluSx SINE Alu 1 305 -7 420 266 18 9 chr4 39853404 39853517 -144435145 - MIR3 SINE MIR -13 195 82 589 215 21 14 chr4 39853808 39853952 -144434710 + MIR SINE MIR 108 252 -10 284 304 72 24 chr4 39854799 39854924 -144433738 - L2 LINE L2 -5 3267 3137 187 320 112 50 chr4 39855235 39855672 -144432990 - L2 LINE L2 -454 2860 2397 1115 171 180 13 chr4 39855675 39855914 -144432748 + AluSg1 SINE Alu 1 279 -30 251 235 25 49 chr4 39856298 39856379 -144432283 + L1MC4a LINE L1 5848 5926 -1882 2191 114 3 7 chr4 39856490 39856788 -144431874 - AluSx SINE Alu -15 297 1 2298 96 0 7 chr4 39857006 39857307 -144431355 - AluSx SINE Alu -13 299 1 944 163 6 12 chr4 39857521 39857687 -144430975 + AluJo SINE Alu 126 290 -22 1028 219 40 0 chr4 39857906 39858107 -144430555 + MER3 DNA MER1_type 1 209 0 2161 198 59 28 chr4 39859300 39859845 -144428817 - MER68 LTR ERV1 0 562 1 1723 191 60 0 chr4 39860014 39860333 -144428329 - MER58B DNA MER1_type 0 341 4 448 235 56 29 chr4 39860374 39860575 -144428087 + L1ME LINE L1 5490 5694 -427 2317 117 0 0 chr4 39861167 39861466 -144427196 + AluSx SINE Alu 1 299 -13 593 280 96 8 chr4 39861474 39861735 -144426927 - MLT1J LTR MaLR -2 509 226 994 182 88 0 chr4 39862564 39862756 -144425906 - MER3 DNA MER1_type 0 209 1 2035 135 7 0 chr4 39863880 39864176 -144424486 + AluSx SINE Alu 1 298 -14 520 240 39 13 chr4 39865186 39865340 -144423322 - MLT1J LTR MaLR -315 196 39 276 309 73 6 chr4 39865349 39865514 -144423148 + L2 LINE L2 2316 2491 -823 373 226 0 29 chr4 39865699 39865801 -144422861 - L1P5 LINE L1 -571 5585 5487 2179 116 7 3 chr4 39865808 39866110 -144422552 - AluSx SINE Alu -9 303 1 787 193 25 54 chr4 39866110 39866234 -144422428 - L1M4 LINE L1 -835 5311 5196 943 148 0 15 chr4 39866234 39866369 -144422293 - FLAM_C SINE Alu 0 133 1 787 193 25 54 chr4 39866369 39866483 -144422179 - L1M4 LINE L1 -950 5196 5080 1658 176 15 0 chr4 39866484 39866746 -144421916 + AluJb SINE Alu 1 266 -46 850 136 25 0 chr4 39866787 39866905 -144421757 + FLAM_A SINE Alu 5 125 -8 901 201 46 0 chr4 39866908 39867102 -144421560 - L1M4 LINE L1 -1063 5083 4881 584 178 109 25 chr4 39867103 39867305 -144421357 - L1M4 LINE L1 -831 5315 5097 237 132 0 0 chr4 39867306 39867344 -144421318 + (TA)n Simple_repeat Simple_repeat 2 39 0 249 33 0 0 chr4 39867344 39867374 -144421288 + (GA)n Simple_repeat Simple_repeat 2 31 0 1426 210 95 9 chr4 39867593 39867940 -144420722 - MLT1E1 LTR MaLR -277 377 1 2294 212 139 31 chr4 39867949 39868070 -144420592 - L1M4 LINE L1 -1559 4587 4480 2325 97 3 0 chr4 39868070 39868368 -144420294 - AluSq SINE Alu -14 299 1 2294 212 139 31 chr4 39868368 39869089 -144419573 - L1M4 LINE L1 -1666 4480 3654 327 280 40 0 chr4 39869078 39869228 -144419434 - L1MDa LINE L1 -4147 2416 2261 * 809 235 176 20 chr4 39869290 39869986 -144418676 - L1MDa LINE L1 -4482 2081 1178 1972 155 0 10 chr4 39870002 39870312 -144418350 - AluJo SINE Alu -5 307 1 198 0 0 0 chr4 39870316 39870338 -144418324 + (A)n Simple_repeat Simple_repeat 1 22 0 914 217 6 17 chr4 39870574 39870749 -144417913 + FAM SINE Alu 1 173 -2 785 113 19 0 chr4 39875950 39876056 -144412606 + AluSg/x SINE Alu 186 293 -17 2230 102 7 0 chr4 39876203 39876498 -144412164 + AluSx SINE Alu 1 297 -15 2027 102 11 21 chr4 39878286 39878615 -144410047 - AluSq SINE Alu 0 326 1 633 185 196 0 chr4 39879577 39879750 -144408912 - MLT1D LTR MaLR -186 319 113 471 113 0 38 chr4 39879772 39879852 -144408810 + MLT1D LTR MaLR 429 505 0 2144 117 13 3 chr4 39880061 39880370 -144408292 + AluSx SINE Alu 1 312 0 1909 156 7 3 chr4 39880391 39880693 -144407969 + AluSx SINE Alu 1 303 -9 298 359 0 0 chr4 39881106 39881212 -144407450 - MIR SINE MIR -69 139 34 8459 12 0 0 chr4 39881920 39883273 -144405389 - L1PA2 LINE L1 0 6155 4803 1041 9 0 0 chr4 39883273 39883380 -144405282 - U6 snRNA snRNA 0 107 1 417 311 107 4 chr4 39883392 39883617 -144405045 - L1ME4a LINE L1 -197 5924 5677 1871 156 23 0 chr4 39883701 39884002 -144404660 + AluJb SINE Alu 1 308 -4 820 79 0 0 chr4 39884505 39884606 -144404056 + AluY SINE Alu 1 101 -210 3493 94 0 6 chr4 39884618 39885085 -144403577 + MER9 LTR ERVK 40 503 -8 1524 116 9 0 chr4 39885085 39885309 -144403353 + AluY SINE Alu 86 311 0 1081 126 0 0 chr4 39885433 39885615 -144403047 + AluSg/x SINE Alu 133 314 0 4948 123 41 39 chr4 39886099 39886480 -144402182 + L1MC1 LINE L1 5450 5829 -504 2069 123 16 7 chr4 39886480 39886789 -144401873 + AluSx SINE Alu 1 312 0 4948 123 41 39 chr4 39886789 39887245 -144401417 + L1MC1 LINE L1 5829 6288 -45 326 100 0 20 chr4 39887267 39887317 -144401345 - AluSq/x SINE Alu -198 105 57 809 161 8 0 chr4 39887334 39887458 -144401204 + FLAM_C SINE Alu 2 126 -17 21 0 0 0 chr4 39888565 39888586 -144400076 + AT_rich Low_complexity Low_complexity 1 21 0 2392 85 7 0 chr4 39889128 39889422 -144399240 - AluSq SINE Alu -17 296 1 545 266 102 51 chr4 39889424 39889778 -144398884 - L1MC4a LINE L1 -1926 5882 5511 214 270 34 56 chr4 39890346 39890435 -144398227 + L2 LINE L2 3185 3271 -1 1936 156 0 7 chr4 39890992 39891293 -144397369 + AluSx SINE Alu 1 299 -13 23 0 0 0 chr4 39891566 39891589 -144397073 + AT_rich Low_complexity Low_complexity 1 23 0 406 219 39 101 chr4 39892648 39892826 -144395836 + MIR SINE MIR 24 190 -72 2019 129 0 4 chr4 39893103 39893413 -144395249 + AluSg SINE Alu 1 309 0 23 0 0 0 chr4 39893522 39893545 -144395117 + AT_rich Low_complexity Low_complexity 1 23 0 484 313 51 63 chr4 39893869 39894220 -144394442 + L2 LINE L2 2926 3272 0 2221 166 58 7 chr4 39895035 39895498 -144393164 + L1MB7 LINE L1 5677 6163 -21 1899 195 67 50 chr4 39895529 39896093 -144392569 + L1MC4a LINE L1 7138 7711 -97 2080 132 3 7 chr4 39896528 39896823 -144391839 + AluSx SINE Alu 1 294 -18 252 167 37 0 chr4 39897670 39897724 -144390938 + MLT1J LTR MaLR 111 166 -345 289 246 329 6 chr4 39897804 39897971 -144390691 + MLT1L LTR MaLR 306 526 -89 557 306 68 42 chr4 39900021 39900328 -144388334 + L2 LINE L2 158 472 -2842 1770 292 126 47 chr4 39900488 39901619 -144387043 + L2 LINE L2 1553 2852 -461 2249 93 3 3 chr4 39901619 39901920 -144386742 + AluSp SINE Alu 1 301 -12 1770 292 126 47 chr4 39901920 39902363 -144386299 + L2 LINE L2 2852 3259 -54 214 304 54 11 chr4 39903292 39903384 -144385278 - MER5A DNA MER1_type -26 163 68 2342 68 0 3 chr4 39903545 39903839 -144384823 + AluY SINE Alu 1 293 -18 264 372 0 0 chr4 39903934 39904012 -144384650 - MER5A DNA MER1_type 0 189 112 490 243 292 0 chr4 39904794 39904996 -144383666 - MIR SINE MIR 0 262 2 785 240 64 0 chr4 39904999 39905203 -144383459 + MIR SINE MIR 40 256 -6 554 134 0 80 chr4 39905339 39905451 -144383211 - Tigger7 DNA MER2_type 0 2491 2389 * 1473 194 4 8 chr4 39905446 39905714 -144382948 - Tigger7 DNA MER2_type -2220 267 1 2459 85 3 0 chr4 39905738 39906045 -144382617 + AluSp SINE Alu 1 308 -5 40 0 0 0 chr4 39907767 39907807 -144380855 + AT_rich Low_complexity Low_complexity 1 40 0 1516 179 12 8 chr4 39907837 39908094 -144380568 + AluJb SINE Alu 44 301 -11 941 191 0 0 chr4 39908304 39908466 -144380196 + FRAM SINE Alu 2 163 -3 1759 167 43 3 chr4 39908472 39908772 -144379890 + AluJb SINE Alu 1 312 0 23 0 0 0 chr4 39908881 39908904 -144379758 + AT_rich Low_complexity Low_complexity 1 23 0 232 363 0 12 chr4 39910299 39910379 -144378283 - L2 LINE L2 -16 3256 3178 2145 262 85 33 chr4 39910597 39911071 -144377591 + L2 LINE L2 1964 2412 -902 1966 149 0 0 chr4 39911071 39911353 -144377309 - AluJb SINE Alu -30 282 1 2145 262 85 33 chr4 39911353 39911614 -144377048 + L2 LINE L2 2412 2745 -569 1776 127 91 4 chr4 39911614 39911889 -144376773 + AluSg SINE Alu 1 299 -11 2145 262 85 33 chr4 39911889 39911939 -144376723 + L2 LINE L2 2745 2791 -523 22 0 0 0 chr4 39913078 39913100 -144375562 + AT_rich Low_complexity Low_complexity 1 22 0 1784 164 24 14 chr4 39913520 39913813 -144374849 + AluJb SINE Alu 1 296 -16 1115 262 196 12 chr4 39913936 39914618 -144374044 - L2 LINE L2 -13 3300 2502 234 0 0 0 chr4 39914798 39914824 -144373838 + (A)n Simple_repeat Simple_repeat 1 26 0 1500 143 23 53 chr4 39914890 39915026 -144373636 + AluJo SINE Alu 1 127 -185 1527 116 112 0 chr4 39915026 39915258 -144373404 + AluSx SINE Alu 49 306 -6 1500 143 23 53 chr4 39915258 39915387 -144373275 + AluJo SINE Alu 127 258 -54 2124 124 3 0 chr4 39915423 39915714 -144372948 + AluSx SINE Alu 1 292 -20 237 154 39 58 chr4 39915838 39915890 -144372772 - L2 LINE L2 -6 3266 3216 25 51 0 0 chr4 39915966 39916005 -144372657 + AT_rich Low_complexity Low_complexity 1 39 0 192 200 0 0 chr4 39916565 39916605 -144372057 + (TA)n Simple_repeat Simple_repeat 2 41 0 416 276 113 23 chr4 39917225 39917530 -144371132 + L1ME4a LINE L1 5704 6050 -71 2050 126 85 18 chr4 39917539 39917880 -144370782 + THE1B LTR MaLR 1 364 0 422 303 107 32 chr4 39918135 39918445 -144370217 - L3 LINE CR1 -41 1536 1204 910 110 24 0 chr4 39918506 39918633 -144370029 + FLAM_C SINE Alu 1 130 -13 222 309 95 0 chr4 39918794 39918878 -144369784 + MIR3 SINE MIR 113 204 -4 473 278 115 26 chr4 39918949 39919219 -144369443 + L1ME LINE L1 5529 5822 -299 23 0 0 0 chr4 39919887 39919910 -144368752 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr4 39921530 39921554 -144367108 + AT_rich Low_complexity Low_complexity 1 24 0 355 315 143 60 chr4 39921878 39922226 -144366436 + L3 LINE CR1 83 400 -1177 973 182 106 0 chr4 39922226 39922424 -144366238 - MER20 DNA MER1_type 0 219 1 355 315 143 60 chr4 39922424 39922697 -144365965 + L3 LINE CR1 400 756 -821 2460 73 3 0 chr4 39922763 39923065 -144365597 + AluSp SINE Alu 1 303 -10 342 0 0 0 chr4 39923106 39923144 -144365518 + (TG)n Simple_repeat Simple_repeat 2 39 0 24 0 0 0 chr4 39923158 39923182 -144365480 + AT_rich Low_complexity Low_complexity 1 24 0 979 163 27 5 chr4 39924079 39924300 -144364362 - Charlie5 DNA MER1_type 0 2623 2398 4451 185 34 8 chr4 39924316 39925394 -144363268 - L1MA9 LINE L1 -38 6274 5169 414 230 17 17 chr4 39925396 39925515 -144363147 - MER33 DNA MER1_type -265 59 1 578 259 32 60 chr4 39925645 39925830 -144362832 - MIR SINE MIR 0 262 83 333 67 0 0 chr4 39926078 39926123 -144362539 + LTR54 LTR ERV1 402 446 -64 1849 143 38 126 chr4 39928296 39928702 -144359960 - MLT1D LTR MaLR 0 505 159 2280 89 24 0 chr4 39928702 39928993 -144359669 - AluSx SINE Alu -14 298 1 1849 143 38 126 chr4 39928993 39929140 -144359522 - MLT1D LTR MaLR -346 159 1 223 279 0 0 chr4 39929185 39929228 -144359434 + L2 LINE L2 3251 3293 -20 2248 107 0 7 chr4 39929500 39929799 -144358863 + AluSx SINE Alu 1 297 -15 27 0 0 26 chr4 39930138 39930155 -144358507 + AT_rich Low_complexity Low_complexity 1 17 -20 1460 163 16 82 chr4 39930155 39930461 -144358201 + AluSx SINE Alu 5 290 -22 27 0 0 26 chr4 39930461 39930481 -144358181 + AT_rich Low_complexity Low_complexity 17 37 0 2032 112 24 20 chr4 39930693 39930987 -144357675 - AluSx SINE Alu -13 299 5 1553 80 0 0 chr4 39931197 39931385 -144357277 - AluY SINE Alu -18 293 106 963 172 20 44 chr4 39931414 39931618 -144357044 + MER20 DNA MER1_type 1 199 -20 2389 88 3 0 chr4 39931865 39932162 -144356500 + AluSp SINE Alu 1 298 -15 1090 240 35 35 chr4 39932413 39932755 -144355907 + L1ME LINE L1 292 633 -5437 1015 224 101 58 chr4 39932786 39933183 -144355479 + MLT2D LTR ERVL 1 414 0 2637 204 21 38 chr4 39933183 39933814 -144354848 + MLT1-int LTR MaLR 1 620 -751 342 167 97 0 chr4 39933815 39933887 -144354775 + AluSx SINE Alu 1 79 -223 200 430 18 0 chr4 39934063 39934177 -144354485 + MIR SINE MIR 37 152 -110 2205 91 10 0 chr4 39934325 39934623 -144354039 + AluY SINE Alu 1 301 -10 277 314 9 9 chr4 39935096 39935201 -144353461 + CT-rich Low_complexity Low_complexity 1 105 0 2887 123 119 4 chr4 39936262 39936758 -144351904 - MER41C LTR ERV1 -1 553 1 967 150 52 16 chr4 39936801 39936994 -144351668 + L1MC1 LINE L1 453 652 -5774 771 39 0 0 chr4 39936995 39937098 -144351564 + AluY SINE Alu 147 249 -62 1198 124 18 60 chr4 39937098 39937156 -144351506 + AluSx SINE Alu 85 144 -168 2150 91 10 19 chr4 39937156 39937465 -144351197 + AluSx SINE Alu 1 306 -6 1198 124 18 60 chr4 39937465 39937623 -144351039 + AluSx SINE Alu 144 292 -20 2041 168 20 18 chr4 39937624 39937776 -144350886 + L1MC1 LINE L1 647 797 -5629 2430 142 35 37 chr4 39937776 39938205 -144350457 - MSTC LTR MaLR 0 428 1 2041 168 20 18 chr4 39938205 39938493 -144350169 + L1MC1 LINE L1 797 1088 -5338 1331 178 68 25 chr4 39938494 39938820 -144349842 + L1MC1 LINE L1 1324 1663 -4763 1666 158 0 52 chr4 39939250 39939560 -144349102 + AluJo SINE Alu 1 294 -18 2387 121 101 49 chr4 39940060 39940653 -144348009 + L1MC1 LINE L1 1738 2361 -4065 1652 171 36 86 chr4 39940660 39940923 -144347739 + L1MC1 LINE L1 3049 3273 -3153 770 211 0 35 chr4 39940923 39941094 -144347568 - FRAM SINE Alu 0 166 2 1652 171 36 86 chr4 39941094 39941379 -144347283 + L1MC1 LINE L1 3273 3570 -2856 2187 115 0 3 chr4 39941451 39941756 -144346906 + AluSq SINE Alu 1 304 -9 6325 189 40 43 chr4 39941769 39943078 -144345584 + L1MC1 LINE L1 3779 5090 -1523 2273 111 0 0 chr4 39943078 39943376 -144345286 - AluSx SINE Alu -14 298 1 6325 189 40 43 chr4 39943376 39944788 -144343874 + L1MC1 LINE L1 5090 6485 -128 3635 174 84 12 chr4 39944793 39946209 -144342453 + L1MB7 LINE L1 4654 6173 -11 2315 59 0 7 chr4 39946457 39946773 -144341889 + AluSc SINE Alu 5 318 0 2010 121 3 3 chr4 39947592 39947874 -144340788 + AluSg SINE Alu 1 282 -28 324 0 0 0 chr4 39947874 39947910 -144340752 + (CAAT)n Simple_repeat Simple_repeat 2 37 0 723 273 102 64 chr4 39947912 39948429 -144340233 - MLT1G1 LTR MaLR -15 580 1 1608 103 0 0 chr4 39949075 39949278 -144339384 + AluSg/x SINE Alu 95 297 -15 4114 124 22 6 chr4 39949318 39949988 -144338674 - HSMAR2 DNA Mariner 0 1302 622 1968 153 0 20 chr4 39949999 39950294 -144338368 - AluSg SINE Alu -13 297 9 2118 157 16 0 chr4 39950307 39950677 -144337985 - HSMAR2 DNA Mariner -896 406 31 1607 191 3 10 chr4 39950677 39950975 -144337687 - AluJo SINE Alu -16 296 1 226 189 0 0 chr4 39951023 39951060 -144337602 - Alu SINE Alu -263 37 1 251 308 200 25 chr4 39951181 39951421 -144337241 - L2 LINE L2 -845 2469 2188 236 221 116 23 chr4 39951964 39952050 -144336612 + L2 LINE L2 3216 3309 -4 706 291 45 42 chr4 39952695 39953124 -144335538 - L1ME LINE L1 -454 5708 5263 2370 93 30 38 chr4 39953437 39953804 -144334858 - THE1B LTR MaLR 0 364 1 215 232 0 0 chr4 39953911 39953967 -144334695 + T-rich Low_complexity Low_complexity 1 56 0 22 0 0 0 chr4 39954174 39954196 -144334466 + AT_rich Low_complexity Low_complexity 1 22 0 28 48 0 0 chr4 39954245 39954287 -144334375 + AT_rich Low_complexity Low_complexity 1 42 0 286 289 73 10 chr4 39954581 39954691 -144333971 + MIR SINE MIR 39 153 -63 354 178 14 27 chr4 39954985 39955058 -144333604 - MER5A DNA MER1_type -117 72 1 29 60 0 0 chr4 39955231 39955281 -144333381 + AT_rich Low_complexity Low_complexity 1 50 0 346 308 100 15 chr4 39955475 39955605 -144333057 + MIR SINE MIR 109 249 -13 289 234 21 21 chr4 39955869 39955963 -144332699 + L1MC5 LINE L1 7832 7925 -36 1253 165 4 48 chr4 39955969 39956199 -144332463 + AluJo SINE Alu 1 220 -92 284 125 0 0 chr4 39956199 39956247 -144332415 + AluJb SINE Alu 86 133 -169 186 43 0 0 chr4 39956263 39956286 -144332376 + (GGAA)n Simple_repeat Simple_repeat 2 24 0 1139 147 0 6 chr4 39956290 39956460 -144332202 + AluSg/x SINE Alu 129 297 -15 197 237 0 0 chr4 39956490 39956528 -144332134 - L2 LINE L2 -6 3266 3229 292 300 93 47 chr4 39956629 39956779 -144331883 - L2 LINE L2 -212 3060 2904 655 106 106 0 chr4 39956944 39957057 -144331605 - L1MA10 LINE L1 -7 6327 6203 2329 109 0 0 chr4 39957700 39957994 -144330668 - AluSx SINE Alu -16 296 3 1361 197 26 68 chr4 39958716 39958962 -144329700 + L1MC4 LINE L1 7459 7714 -328 2487 82 0 0 chr4 39958962 39959265 -144329397 + AluSg SINE Alu 1 303 -7 1361 197 26 68 chr4 39959265 39959322 -144329340 + L1MC4 LINE L1 7714 7772 -270 1963 143 0 3 chr4 39959322 39959609 -144329053 + AluSx SINE Alu 1 286 -26 1361 197 26 68 chr4 39959609 39959731 -144328931 + L1MC4 LINE L1 7772 7867 -175 1456 256 68 0 chr4 39960054 39960512 -144328150 + MER90 LTR ERV1 1 489 -86 344 175 0 0 chr4 39960510 39960567 -144328095 - AluSg/x SINE Alu -88 214 158 * 295 107 286 0 chr4 39960567 39960623 -144328039 + MER90 LTR ERV1 477 548 -27 861 124 90 0 chr4 39960992 39961137 -144327525 - AluJ SINE Alu -18 294 137 3255 194 68 9 chr4 39961139 39961868 -144326794 - L1MB8 LINE L1 -296 5882 5036 2254 107 0 7 chr4 39961868 39962166 -144326496 + AluSq SINE Alu 1 296 -17 3255 194 68 9 chr4 39962166 39962634 -144326028 - L1MB8 LINE L1 -1142 5036 4597 658 190 183 0 chr4 39963245 39963382 -144325280 - AluJo SINE Alu -4 298 137 673 189 0 49 chr4 39963382 39963498 -144325164 - AluJo SINE Alu -176 136 27 1441 157 240 17 chr4 39963498 39963848 -144324814 - MSTA LTR MaLR 0 428 1 673 189 0 49 chr4 39963848 39963874 -144324788 - AluJo SINE Alu -285 27 1 22 35 0 0 chr4 39963997 39964026 -144324636 + AT_rich Low_complexity Low_complexity 1 29 0 2061 128 3 53 chr4 39964028 39964348 -144324314 + AluSx SINE Alu 1 304 -8 309 100 0 0 chr4 39964353 39964403 -144324259 - L1MB5 LINE L1 -8 6166 6117 2307 75 3 10 chr4 39964539 39964834 -144323828 - AluSq SINE Alu -20 293 1 939 183 0 0 chr4 39965115 39965268 -144323394 - FRAM SINE Alu -23 153 1 340 206 81 47 chr4 39965298 39965452 -144323210 - L1ME2 LINE L1 -298 5866 5696 2034 115 20 10 chr4 39965452 39965757 -144322905 - AluSx SINE Alu -4 308 1 2311 95 7 0 chr4 39965774 39966078 -144322584 - AluSc SINE Alu -3 306 1 219 248 23 105 chr4 39966099 39966232 -144322430 + MIR SINE MIR 4 147 -61 2282 84 3 13 chr4 39966988 39967286 -144321376 - AluSx SINE Alu -17 295 1 222 222 74 0 chr4 39967780 39967834 -144320828 + L3b LINE CR1 1526 1583 0 2365 47 56 19 chr4 39968141 39968462 -144320200 - L1PA8 LINE L1 0 6172 5840 2118 128 6 16 chr4 39969135 39969448 -144319214 - AluJb SINE Alu -2 310 1 342 0 0 0 chr4 39969780 39969818 -144318844 + (TG)n Simple_repeat Simple_repeat 1 38 0 28 0 0 0 chr4 39970207 39970235 -144318427 + AT_rich Low_complexity Low_complexity 1 28 0 2312 105 10 0 chr4 39970351 39970657 -144318005 + AluSx SINE Alu 1 309 -3 189 317 110 0 chr4 39970891 39970973 -144317689 - L2 LINE L2 -3 3310 3220 382 297 103 30 chr4 39971075 39971240 -144317422 + MER5B DNA MER1_type 2 178 0 3036 162 53 12 chr4 39971335 39971941 -144316721 + L1MB5 LINE L1 5544 6174 0 2223 105 3 7 chr4 39972005 39972311 -144316351 + AluSg SINE Alu 1 305 -5 2775 103 32 75 chr4 39972685 39972816 -144315846 + L1PB3 LINE L1 5654 5789 -365 778 145 8 0 chr4 39972816 39972933 -144315729 + FLAM_C SINE Alu 1 118 -15 2775 103 32 75 chr4 39972933 39973164 -144315498 + L1PB3 LINE L1 5789 5990 -164 2214 123 0 7 chr4 39973164 39973472 -144315190 + AluSx SINE Alu 1 306 -6 2775 103 32 75 chr4 39973472 39973631 -144315031 + L1PB3 LINE L1 5990 6154 0 2352 64 0 0 chr4 39973791 39974101 -144314561 + AluY SINE Alu 1 310 0 2377 244 61 26 chr4 39974630 39975396 -144313266 - L1MD2 LINE L1 -17 6342 5550 1410 75 6 0 chr4 39975465 39975638 -144313024 - AluSq SINE Alu -15 298 125 712 113 0 140 chr4 39976083 39976233 -144312429 - FLAM_C SINE Alu 0 133 5 2611 44 0 16 chr4 39976264 39976579 -144312083 + AluY SINE Alu 1 310 -1 2194 195 58 54 chr4 39977382 39977626 -144311036 - L1MC4 LINE L1 -142 7900 7658 2028 135 0 7 chr4 39977626 39977929 -144310733 - AluJb SINE Alu -11 301 1 2194 195 58 54 chr4 39977929 39978165 -144310497 - L1MC4 LINE L1 -384 7658 7424 2180 137 52 3 chr4 39978165 39978531 -144310131 - L1MC1 LINE L1 -5 6328 5945 2194 195 58 54 chr4 39978531 39978569 -144310093 - L1MC4 LINE L1 -618 7424 7388 2464 85 0 0 chr4 39978569 39978874 -144309788 - AluSq SINE Alu -8 305 1 2194 195 58 54 chr4 39978874 39979106 -144309556 - L1MC4 LINE L1 -654 7388 6997 5241 62 16 62 chr4 39979106 39979897 -144308765 - L1PA13 LINE L1 -4 6159 5405 890 185 83 11 chr4 39980348 39980613 -144308049 - L1P4 LINE L1 -626 5537 5254 1391 224 53 79 chr4 39980616 39980796 -144307866 - L1MC4 LINE L1 -1033 7009 6826 1715 148 14 14 chr4 39980796 39981073 -144307589 - AluJb SINE Alu -1 311 35 1391 224 53 79 chr4 39981073 39981459 -144307203 - L1MC4 LINE L1 -1216 6826 6458 2137 104 10 0 chr4 39981985 39982274 -144306388 + AluSx SINE Alu 1 292 -20 23 33 0 0 chr4 39982299 39982329 -144306333 + AT_rich Low_complexity Low_complexity 1 30 0 261 0 0 0 chr4 39982404 39982433 -144306229 + (CA)n Simple_repeat Simple_repeat 1 29 0 2339 94 0 0 chr4 39982520 39982817 -144305845 - AluSq SINE Alu -16 297 1 523 223 74 7 chr4 39982821 39982969 -144305693 + LTR41 LTR ERVL 5 162 -611 775 204 104 16 chr4 39983006 39983328 -144305334 + LTR40b LTR ERVL 77 447 -15 285 218 42 11 chr4 39983355 39983450 -144305212 + LTR41 LTR ERVL 684 795 0 425 222 23 55 chr4 39983956 39984127 -144304535 + MIR SINE MIR 40 244 -18 725 238 40 0 chr4 39984538 39984689 -144303973 - MER58A DNA MER1_type 0 162 6 26 0 0 0 chr4 39984827 39984853 -144303809 + AT_rich Low_complexity Low_complexity 1 26 0 844 131 0 8 chr4 39984854 39984976 -144303686 - FLAM_C SINE Alu -10 133 13 36 53 0 0 chr4 39985329 39985386 -144303276 + AT_rich Low_complexity Low_complexity 1 57 0 1870 181 3 0 chr4 39985801 39986110 -144302552 - AluSx SINE Alu 0 312 3 481 296 57 96 chr4 39986259 39986527 -144302135 - L1MEd LINE L1 -5700 419 173 2079 133 13 3 chr4 39986527 39986828 -144301834 - AluJb SINE Alu -6 306 3 481 296 57 96 chr4 39986828 39986995 -144301667 - L1MEd LINE L1 -5946 173 1 1878 155 0 29 chr4 39987286 39987596 -144301066 + AluJb SINE Alu 1 301 -11 275 306 174 49 chr4 39987782 39987886 -144300776 + MER5B DNA MER1_type 17 145 -33 3621 112 4 4 chr4 39987886 39988397 -144300265 + MER9 LTR ERVK 1 511 0 275 306 174 49 chr4 39988397 39988436 -144300226 + MER5B DNA MER1_type 145 178 0 208 267 0 0 chr4 39988568 39988613 -144300049 - MIR3 SINE MIR -16 192 148 1199 148 10 5 chr4 39988728 39988930 -144299732 + L1PA16 LINE L1 5953 6155 -11 2152 84 0 84 chr4 39988930 39989251 -144299411 + AluSg SINE Alu 1 294 -16 1748 130 65 24 chr4 39989464 39989756 -144298906 - AluJo SINE Alu -7 305 2 21 36 0 0 chr4 39989908 39989936 -144298726 + AT_rich Low_complexity Low_complexity 1 28 0 1585 155 7 63 chr4 39990678 39990981 -144297681 + AluJo SINE Alu 6 291 -21 1552 141 72 4 chr4 39991107 39991369 -144297293 - AluJo SINE Alu -17 295 16 2018 118 0 19 chr4 39991404 39991727 -144296935 - MER84 LTR ERVI -190 317 1 188 282 0 0 chr4 39992308 39992347 -144296315 - L2 LINE L2 -9 3263 3225 7824 189 43 25 chr4 39992628 39995330 -144293332 - L1MB5 LINE L1 -59 6115 3366 2265 76 6 28 chr4 39995599 39995916 -144292746 - AluY SINE Alu -1 310 1 731 265 85 18 chr4 39995951 39996174 -144292488 + MIR SINE MIR 19 256 -6 1944 137 10 3 chr4 39998828 39999134 -144289528 - AluSx SINE Alu -4 308 1 2280 102 0 0 chr4 39999671 39999965 -144288697 - AluSq SINE Alu -19 294 1 682 243 85 11 chr4 40000102 40000291 -144288371 + MIR SINE MIR 47 249 -13 1887 130 53 3 chr4 40000362 40000646 -144288016 - AluSx SINE Alu -14 298 1 1365 147 8 66 chr4 40001140 40001304 -144287358 - AluJo SINE Alu -30 282 137 2181 118 0 3 chr4 40001304 40001609 -144287053 + AluSg SINE Alu 1 304 -6 1365 147 8 66 chr4 40001609 40001702 -144286960 - AluJo SINE Alu -175 137 40 2344 99 0 7 chr4 40002084 40002388 -144286274 - AluSg SINE Alu -8 302 1 1475 183 183 35 chr4 40003931 40004329 -144284333 + MSTB2 LTR MaLR 1 457 0 245 285 44 38 chr4 40004488 40004646 -144284016 + L2 LINE L2 2745 2903 -411 228 234 160 21 chr4 40005039 40005133 -144283529 + MSTB2 LTR MaLR 202 308 -149 296 284 0 0 chr4 40005496 40005563 -144283099 - HsTC2 DNA Tc2 -1 1897 1831 235 81 27 0 chr4 40005592 40005629 -144283033 - HsTC2 DNA Tc2 -175 1723 1686 386 244 185 0 chr4 40005636 40005755 -144282907 - HsTC2 DNA Tc2 -1757 141 1 429 256 169 17 chr4 40005813 40005985 -144282677 - MIR SINE MIR -6 256 59 649 225 54 0 chr4 40007015 40007144 -144281518 + MIR SINE MIR 4 139 -123 28 29 0 0 chr4 40007453 40007488 -144281174 + AT_rich Low_complexity Low_complexity 1 35 0 1886 149 0 30 chr4 40007671 40007972 -144280690 + AluJb SINE Alu 1 292 -20 1289 125 0 11 chr4 40008489 40008673 -144279989 + AluSq SINE Alu 38 219 -94 586 124 7 109 chr4 40008673 40008810 -144279852 + AluSg/x SINE Alu 188 310 -2 2216 103 0 10 chr4 40008839 40009140 -144279522 + AluSx SINE Alu 1 298 -14 282 238 69 39 chr4 40009173 40009254 -144279408 - MIR3 SINE MIR -52 156 73 31 68 0 0 chr4 40010363 40010422 -144278240 + AT_rich Low_complexity Low_complexity 1 59 0 180 77 0 0 chr4 40011023 40011049 -144277613 + (TGGG)n Simple_repeat Simple_repeat 4 29 0 2203 130 0 0 chr4 40011090 40011398 -144277264 + AluSx SINE Alu 1 308 -4 996 212 125 23 chr4 40011406 40011670 -144276992 + AluJo SINE Alu 1 291 -11 1023 242 147 58 chr4 40011915 40012430 -144276232 - L2 LINE L2 -1 3312 2733 261 0 0 0 chr4 40012665 40012694 -144275968 + (TG)n Simple_repeat Simple_repeat 2 30 0 451 217 17 11 chr4 40012694 40012869 -144275793 + (TA)n Simple_repeat Simple_repeat 2 177 0 1770 193 0 0 chr4 40012985 40013281 -144275381 + AluJb SINE Alu 1 296 -16 2289 92 3 0 chr4 40013369 40013661 -144275001 + AluSc SINE Alu 1 293 -16 500 323 54 79 chr4 40013786 40014155 -144274507 - L3 LINE CR1 -431 1146 787 1656 142 32 79 chr4 40014437 40014753 -144273909 - AluJb SINE Alu -11 301 1 21 0 0 0 chr4 40015245 40015266 -144273396 + AT_rich Low_complexity Low_complexity 1 21 0 270 220 0 0 chr4 40015270 40015329 -144273333 + L2 LINE L2 2799 2857 -457 901 296 104 50 chr4 40015367 40016029 -144272633 - L2 LINE L2 -1213 2101 1404 342 256 49 0 chr4 40016437 40016519 -144272143 + L1MC4 LINE L1 6618 6703 -1339 309 51 0 0 chr4 40016520 40016559 -144272103 + (TG)n Simple_repeat Simple_repeat 2 40 0 1980 149 10 3 chr4 40016576 40016871 -144271791 - AluSx SINE Alu -15 297 1 384 22 0 0 chr4 40017290 40017335 -144271327 + (TA)n Simple_repeat Simple_repeat 2 46 0 330 353 16 1 chr4 40017822 40018010 -144270652 + MIR SINE MIR 38 252 -10 482 306 75 57 chr4 40018741 40019006 -144269656 - L2 LINE L2 -232 3081 2812 1966 117 0 18 chr4 40019165 40019446 -144269216 - AluSx SINE Alu -23 289 14 346 206 143 40 chr4 40019470 40019596 -144269066 - L1MC4 LINE L1 -33 8009 7871 574 98 0 0 chr4 40019597 40019679 -144268983 + AluY SINE Alu 1 82 -228 594 181 9 0 chr4 40019779 40019884 -144268778 - AluSq/x SINE Alu -207 106 1 3713 208 75 6 chr4 40019885 40020781 -144267881 - L1MC4 LINE L1 -269 7773 6816 354 201 7 50 chr4 40021245 40021384 -144267278 + L1ME4a LINE L1 5984 6116 -5 208 158 0 53 chr4 40021642 40021699 -144266963 + A-rich Low_complexity Low_complexity 2 55 0 21 71 0 0 chr4 40021836 40021878 -144266784 + AT_rich Low_complexity Low_complexity 1 42 0 294 305 23 40 chr4 40021906 40022083 -144266579 - L1MC4 LINE L1 -1904 5904 5731 273 196 0 0 chr4 40022085 40022141 -144266521 + (TA)n Simple_repeat Simple_repeat 1 56 0 236 209 0 15 chr4 40022254 40022321 -144266341 + (TATG)n Simple_repeat Simple_repeat 4 69 0 898 299 160 39 chr4 40022388 40023759 -144264903 - L1MC4 LINE L1 -608 5554 4020 2128 112 7 7 chr4 40023815 40024109 -144264553 - AluSx SINE Alu -18 294 1 3135 208 63 12 chr4 40024218 40024982 -144263680 - L1MB7 LINE L1 -11 6173 5371 1777 129 7 52 chr4 40025748 40026058 -144262604 + AluJo SINE Alu 1 296 -16 1462 167 0 72 chr4 40026335 40026446 -144262216 + AluJb SINE Alu 27 144 -168 2269 116 0 3 chr4 40026446 40026748 -144261914 + AluSx SINE Alu 1 301 -11 1462 167 0 72 chr4 40026748 40026929 -144261733 + AluJb SINE Alu 144 298 -14 2239 100 3 3 chr4 40026985 40027284 -144261378 + AluSq SINE Alu 1 299 -14 922 198 33 0 chr4 40027869 40028051 -144260611 - MER5A DNA MER1_type -1 188 1 703 341 90 34 chr4 40028371 40028907 -144259755 + L2 LINE L2 2366 2931 -383 294 278 111 11 chr4 40029193 40029283 -144259379 + MIR3 SINE MIR 3 101 -107 286 345 60 0 chr4 40029338 40029454 -144259208 + MIR3 SINE MIR 85 207 -1 286 250 112 35 chr4 40030184 40030300 -144258362 - MIR SINE MIR -74 188 64 2279 120 0 0 chr4 40030523 40030832 -144257830 + AluSx SINE Alu 1 309 -3 351 274 40 50 chr4 40032628 40032829 -144255833 + L1ME LINE L1 5576 5774 -347 220 261 116 0 chr4 40033370 40033439 -144255223 - MIR SINE MIR -95 113 37 293 286 0 0 chr4 40034425 40034502 -144254160 - MIR SINE MIR -27 235 159 597 68 57 0 chr4 40034943 40035031 -144253631 - L1PA13 LINE L1 -5 6158 6066 923 165 0 35 chr4 40036049 40036219 -144252443 - FRAM SINE Alu -15 161 1 23 0 0 0 chr4 40036967 40036990 -144251672 + AT_rich Low_complexity Low_complexity 1 23 0 30 27 0 0 chr4 40037110 40037147 -144251515 + AT_rich Low_complexity Low_complexity 1 37 0 1906 154 10 0 chr4 40037197 40037489 -144251173 - AluSx SINE Alu -17 295 1 23 78 0 0 chr4 40037553 40037604 -144251058 + AT_rich Low_complexity Low_complexity 1 51 0 495 227 163 5 chr4 40037679 40037882 -144250780 - L1ME LINE L1 -594 5576 5342 216 0 0 0 chr4 40037882 40037906 -144250756 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 1174 281 78 17 chr4 40037911 40038630 -144250032 - L2 LINE L2 -12 3301 2534 1834 135 0 24 chr4 40038811 40039321 -144249341 - AluSx SINE Alu 0 503 1 3741 77 7 75 chr4 40038826 40039331 -144249331 - L1PB1 LINE L1 -1 6150 5997 2145 119 3 0 chr4 40039331 40039624 -144249038 - AluSg SINE Alu -16 294 1 3741 77 7 75 chr4 40039624 40040004 -144248658 - L1PB1 LINE L1 -154 5997 5593 2203 145 13 26 chr4 40040032 40040253 -144248409 - L1PB1 LINE L1 -542 5609 5387 2437 63 0 13 chr4 40040253 40040553 -144248109 - AluY SINE Alu -15 296 1 2203 145 13 26 chr4 40040553 40040923 -144247739 - L1PB1 LINE L1 -764 5387 5030 2277 109 3 0 chr4 40042372 40042675 -144245987 - AluSp SINE Alu -5 308 5 419 283 70 108 chr4 40042687 40043002 -144245660 - L3 LINE CR1 -905 672 370 239 296 49 0 chr4 40043021 40043102 -144245560 - MIR SINE MIR -67 141 57 512 185 33 0 chr4 40043105 40043197 -144245465 + MLT1J2 LTR MaLR 6 100 -350 1933 102 0 79 chr4 40043785 40044089 -144244573 + AluSc SINE Alu 23 302 -7 208 331 42 0 chr4 40044522 40044625 -144244037 - MER5B DNA MER1_type -26 163 46 1213 208 47 15 chr4 40044641 40044999 -144243663 - L1MA6 LINE L1 -11 6289 5933 1059 164 72 0 chr4 40045068 40045263 -144243399 - MER3 DNA MER1_type 0 209 1 485 296 34 48 chr4 40045264 40045470 -144243192 + MIR SINE MIR 32 234 -28 404 279 53 10 chr4 40047194 40047402 -144241260 + L1ME4a LINE L1 5641 5857 -264 1571 271 27 7 chr4 40047531 40047945 -144240717 + MLT1K LTR MaLR 161 582 -6 370 229 112 22 chr4 40047966 40048145 -144240517 + L1ME4a LINE L1 5879 6073 -48 309 51 0 0 chr4 40048162 40048205 -144240457 + (TG)n Simple_repeat Simple_repeat 1 82 0 309 51 0 0 chr4 40048205 40048244 -144240418 + (TG)n Simple_repeat Simple_repeat 2 40 0 859 263 134 37 chr4 40048346 40048802 -144239860 + MLT1J LTR MaLR 12 511 0 401 237 53 9 chr4 40049053 40049167 -144239495 + LTR67 LTR ERVL 439 557 0 324 0 0 0 chr4 40049224 40049260 -144239402 + (CA)n Simple_repeat Simple_repeat 1 36 0 2126 127 0 23 chr4 40049715 40050022 -144238640 + AluSx SINE Alu 1 300 -12 2938 155 19 8 chr4 40050261 40050795 -144237867 + L1MC3 LINE L1 7246 7785 0 682 198 73 57 chr4 40050798 40050975 -144237687 + MIR SINE MIR 62 241 -21 322 200 0 0 chr4 40051006 40051066 -144237596 - Tigger5 DNA MER2_type 0 2323 2264 * 354 171 13 26 chr4 40051062 40051138 -144237524 + Tigger5 DNA MER2_type 2242 2316 -7 278 192 0 0 chr4 40051141 40051193 -144237469 - Tigger5 DNA MER2_type -2244 79 28 2324 88 7 0 chr4 40052044 40052341 -144236321 + AluSx SINE Alu 1 299 -13 26 0 0 0 chr4 40053408 40053434 -144235228 + AT_rich Low_complexity Low_complexity 1 26 0 26 30 0 0 chr4 40054574 40054607 -144234055 + AT_rich Low_complexity Low_complexity 1 33 0 282 278 90 38 chr4 40057179 40057231 -144231431 + MER20B DNA MER1_type 4 52 -731 351 0 0 0 chr4 40057231 40057270 -144231392 + (TGG)n Simple_repeat Simple_repeat 2 40 0 282 278 90 38 chr4 40057270 40057350 -144231312 + MER20B DNA MER1_type 52 143 -640 353 267 164 45 chr4 40057502 40057794 -144230868 - L1MC4a LINE L1 -1879 5929 5603 1259 182 0 0 chr4 40057794 40057992 -144230670 - AluY SINE Alu -11 300 103 1902 110 0 4 chr4 40057992 40058247 -144230415 - AluSx SINE Alu -58 254 1 500 226 77 10 chr4 40058252 40058460 -144230202 - L1MC4a LINE L1 -679 5483 5262 791 248 128 16 chr4 40058685 40058935 -144229727 + L2 LINE L2 3036 3313 0 31 76 0 0 chr4 40058987 40059053 -144229609 + AT_rich Low_complexity Low_complexity 1 66 0 1546 173 59 0 chr4 40059089 40059361 -144229301 - AluJb SINE Alu -24 288 1 224 308 77 0 chr4 40060014 40060092 -144228570 + MIR3 SINE MIR 106 189 -19 22 35 0 0 chr4 40060501 40060530 -144228132 + AT_rich Low_complexity Low_complexity 1 29 0 234 341 186 21 chr4 40060638 40061010 -144227652 - L2 LINE L2 -570 2744 2312 1461 174 87 0 chr4 40061311 40061564 -144227098 + AluSx SINE Alu 1 275 -37 22 0 0 0 chr4 40061894 40061916 -144226746 + AT_rich Low_complexity Low_complexity 1 22 0 342 220 211 0 chr4 40063034 40063143 -144225519 + MIR3 SINE MIR 8 139 -69 270 329 48 72 chr4 40063243 40063410 -144225252 - MIR SINE MIR -50 212 50 227 274 121 24 chr4 40063465 40063589 -144225073 - MIR SINE MIR -63 199 64 203 354 52 66 chr4 40065061 40065273 -144223389 + L2 LINE L2 2669 2877 -437 1892 127 7 11 chr4 40065292 40065599 -144223063 + AluSg SINE Alu 1 306 0 180 0 0 0 chr4 40065977 40065997 -144222665 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2155 116 0 10 chr4 40067615 40067917 -144220745 - AluSx SINE Alu -13 299 1 238 291 0 81 chr4 40067917 40067966 -144220696 + L2 LINE L2 3189 3231 -41 1317 192 10 54 chr4 40067966 40068298 -144220364 - AluJb SINE Alu 0 319 1 238 291 0 81 chr4 40068298 40068333 -144220329 + L2 LINE L2 3231 3267 -5 943 236 80 58 chr4 40068583 40068760 -144219902 + MLT1I LTR MaLR 3 175 -234 2314 105 7 0 chr4 40068760 40069065 -144219597 + AluSq SINE Alu 3 309 -4 943 236 80 58 chr4 40069065 40069285 -144219377 + MLT1I LTR MaLR 175 409 0 290 326 95 0 chr4 40069699 40069846 -144218816 - MIR SINE MIR -101 161 1 2246 112 0 0 chr4 40070272 40070568 -144218094 - AluSx SINE Alu -16 296 1 282 220 121 21 chr4 40070608 40070749 -144217913 - MER103 DNA DNA -1 165 11 794 160 0 0 chr4 40071104 40071235 -144217427 - FLAM_C SINE Alu 0 133 3 407 322 132 58 chr4 40072335 40072919 -144215743 - L1M2 LINE L1 -5450 1399 773 206 267 0 0 chr4 40073035 40073095 -144215567 + G-rich Low_complexity Low_complexity 2 61 0 200 333 14 14 chr4 40073578 40073647 -144215015 - L2 LINE L2 -76 3196 3128 2125 126 0 3 chr4 40074519 40074835 -144213827 + AluSc SINE Alu 1 309 0 719 229 254 22 chr4 40075003 40075369 -144213293 + L2 LINE L2 2863 3313 0 2015 142 0 0 chr4 40075517 40075812 -144212850 + AluSx SINE Alu 1 295 -17 2227 112 3 3 chr4 40076622 40076926 -144211736 - AluSc SINE Alu -5 304 1 1344 144 194 11 chr4 40077191 40077454 -144211208 - AluJo SINE Alu -1 311 1 366 337 67 70 chr4 40077876 40078334 -144210328 + L2 LINE L2 2692 3180 -92 303 28 0 0 chr4 40078346 40078382 -144210280 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 2231 62 0 78 chr4 40078738 40079059 -144209603 + AluY SINE Alu 1 296 -15 2131 92 43 13 chr4 40080297 40080600 -144208062 + AluSq SINE Alu 1 312 -1 1116 192 25 16 chr4 40080956 40081201 -144207461 - L1ME1 LINE L1 -5 6161 5915 425 316 55 73 chr4 40081204 40081476 -144207186 + L2 LINE L2 3042 3308 -5 1859 120 15 99 chr4 40081642 40081975 -144206687 + AluJb SINE Alu 1 305 -7 283 238 0 159 chr4 40082069 40082125 -144206537 + MIR SINE MIR 136 199 -63 712 111 86 0 chr4 40082125 40082242 -144206420 + L1PB1 LINE L1 6025 6151 0 283 238 0 159 chr4 40082242 40082281 -144206381 + MIR SINE MIR 199 201 -61 704 172 16 160 chr4 40082281 40082379 -144206283 + MER20 DNA MER1_type 1 41 -178 1554 197 25 0 chr4 40082379 40082653 -144206009 + AluJo SINE Alu 1 281 -31 704 172 16 160 chr4 40082653 40082810 -144205852 + MER20 DNA MER1_type 41 219 0 283 238 0 159 chr4 40082810 40082864 -144205798 + MIR SINE MIR 201 262 0 591 318 35 10 chr4 40082945 40083143 -144205519 + MIR SINE MIR 48 250 -12 2289 111 0 3 chr4 40083903 40084210 -144204452 + AluSc SINE Alu 1 306 -3 250 294 42 7 chr4 40084345 40084488 -144204174 + L1ME LINE L1 5181 5328 -818 306 278 122 0 chr4 40084495 40084610 -144204052 + L1ME LINE L1 5352 5480 -641 1673 177 31 7 chr4 40084749 40085043 -144203619 - AluJo SINE Alu -11 301 1 2269 98 16 7 chr4 40085787 40086094 -144202568 - AluSg SINE Alu 0 310 1 207 133 0 0 chr4 40086930 40086975 -144201687 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 755 148 66 0 chr4 40087506 40087628 -144201034 - FLAM_A SINE Alu -2 131 2 30 27 0 0 chr4 40088518 40088555 -144200107 + AT_rich Low_complexity Low_complexity 1 37 0 184 280 140 10 chr4 40089160 40089260 -144199402 - L2 LINE L2 -49 3264 3152 2039 95 0 101 chr4 40089579 40089721 -144198941 + AluY SINE Alu 1 91 -220 2017 139 36 0 chr4 40089721 40090022 -144198640 + AluSx SINE Alu 1 312 0 2039 95 0 101 chr4 40090022 40090215 -144198447 + AluY SINE Alu 91 302 -9 2116 148 0 0 chr4 40090817 40091122 -144197540 - AluSx SINE Alu -7 305 1 573 129 0 32 chr4 40091410 40091503 -144197159 - FLAM_A SINE Alu -20 122 33 613 244 22 62 chr4 40091563 40091788 -144196874 + L2 LINE L2 3097 3312 -1 2203 110 10 0 chr4 40092400 40092701 -144195961 - AluSx SINE Alu -8 304 1 1199 207 70 83 chr4 40092888 40092940 -144195722 - L1ME2 LINE L1 -1 6161 6110 2649 90 21 3 chr4 40092940 40093319 -144195343 - L1PA13 LINE L1 -11 6152 5767 1199 207 70 83 chr4 40093319 40093433 -144195229 - L1ME2 LINE L1 -52 6110 5996 1987 127 3 0 chr4 40093433 40093744 -144194918 + AluSx SINE Alu 1 312 0 202 74 0 0 chr4 40093717 40093744 -144194918 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 1199 207 70 83 chr4 40093744 40093885 -144194777 - L1ME2 LINE L1 -166 5996 5855 2080 118 3 37 chr4 40093885 40094207 -144194455 - AluSx SINE Alu -1 311 1 1199 207 70 83 chr4 40094207 40094454 -144194208 - L1ME2 LINE L1 -307 5855 5622 1212 215 120 9 chr4 40094454 40094779 -144193883 - MLT1A1 LTR MaLR 0 365 5 333 280 127 26 chr4 40094779 40094879 -144193783 - L1MA6 LINE L1 -701 5599 5511 851 297 53 18 chr4 40095479 40095873 -144192789 + L1MEd LINE L1 502 909 -5296 3759 155 33 102 chr4 40095924 40096345 -144192317 + L1MA6 LINE L1 4941 5390 -910 1754 175 33 7 chr4 40096345 40096648 -144192014 - AluJo SINE Alu -1 311 1 3759 155 33 102 chr4 40096648 40096921 -144191741 + L1MA6 LINE L1 5390 5680 -620 2286 99 7 0 chr4 40096921 40097215 -144191447 + AluSc SINE Alu 1 296 -13 3759 155 33 102 chr4 40097215 40097238 -144191424 + L1MA6 LINE L1 5680 5703 -597 735 172 0 16 chr4 40097238 40097360 -144191302 + FLAM_A SINE Alu 5 124 -9 3759 155 33 102 chr4 40097360 40098090 -144190572 + L1MA6 LINE L1 5703 6292 -8 666 231 168 25 chr4 40098364 40098680 -144189982 + L1MEd LINE L1 983 1343 -4862 2518 85 0 0 chr4 40098720 40099026 -144189636 - AluSx SINE Alu -6 306 1 261 281 12 0 chr4 40099104 40099186 -144189476 + HAL1 LINE L1 1506 1588 -919 917 264 133 42 chr4 40099562 40100286 -144188376 + L1MEd LINE L1 2037 2694 -3521 2388 85 0 16 chr4 40100286 40100602 -144188060 + AluY SINE Alu 1 311 0 2414 104 28 3 chr4 40100611 40100966 -144187696 + THE1B LTR MaLR 1 364 0 917 264 133 42 chr4 40100966 40101365 -144187297 + L1MEd LINE L1 2701 3062 -3153 2120 129 7 3 chr4 40101365 40101674 -144186988 - AluSg SINE Alu 0 310 1 917 264 133 42 chr4 40101674 40101735 -144186927 + L1MEd LINE L1 3062 3116 -3099 1879 130 84 35 chr4 40101735 40102082 -144186580 - THE1B LTR MaLR 0 364 1 1802 212 75 37 chr4 40102083 40102564 -144186098 - MLT1D LTR MaLR -4 501 3 917 264 133 42 chr4 40102564 40102702 -144185960 + L1MEd LINE L1 3115 3451 -2764 22 70 0 0 chr4 40102931 40102974 -144185688 + AT_rich Low_complexity Low_complexity 1 43 0 2191 121 3 0 chr4 40102992 40103290 -144185372 - AluSx SINE Alu -13 299 1 983 203 14 9 chr4 40103647 40103864 -144184798 + MER58B DNA MER1_type 120 337 -4 2074 82 7 11 chr4 40104067 40104377 -144184285 + AluSc SINE Alu 1 309 0 1852 165 0 28 chr4 40104412 40104733 -144183929 - AluJb SINE Alu 0 312 1 2209 109 6 3 chr4 40104780 40105091 -144183571 - AluSx SINE Alu 0 312 1 1143 60 0 0 chr4 40105092 40105226 -144183436 - AluSq/x SINE Alu -178 134 1 9884 188 37 10 chr4 40105580 40105950 -144182712 - L1PA16 LINE L1 -20 6146 5787 2214 121 0 0 chr4 40105950 40106248 -144182414 - AluSg1 SINE Alu -3 306 9 9884 188 37 10 chr4 40106248 40109122 -144179540 - L1PA16 LINE L1 -379 5787 2821 1865 285 82 32 chr4 40109122 40109993 -144178669 + L1MEd LINE L1 3696 4522 -1693 1974 119 16 39 chr4 40109993 40110356 -144178306 + AluSc SINE Alu 1 309 0 1865 285 82 32 chr4 40110356 40110788 -144177874 + L1MEd LINE L1 4522 5090 -1125 1712 170 11 0 chr4 40110788 40110963 -144177699 - AluJb SINE Alu 0 309 128 249 33 0 0 chr4 40110963 40110993 -144177669 + (TTA)n Simple_repeat Simple_repeat 2 31 0 1712 170 11 0 chr4 40110993 40111121 -144177541 - AluJb SINE Alu -181 128 3 1865 285 82 32 chr4 40111121 40111339 -144177323 + L1MEd LINE L1 5090 5296 -919 1153 105 6 12 chr4 40111457 40111678 -144176984 + AluSg/x SINE Alu 122 341 0 292 220 0 0 chr4 40111678 40111737 -144176925 + MLT1-int LTR MaLR 611 669 -702 287 261 0 0 chr4 40111742 40111811 -144176851 + MLT1-int LTR MaLR 819 887 -484 293 197 0 56 chr4 40111846 40111917 -144176745 + MLT-int LTR MaLR 678 744 -991 2131 226 19 11 chr4 40111981 40112449 -144176213 + MLT1A2-int LTR MaLR 1264 1735 0 598 256 17 23 chr4 40112449 40112625 -144176037 + MLT1A2 LTR MaLR 1 175 -199 312 222 0 12 chr4 40112694 40112775 -144175887 + MLT1A2 LTR MaLR 178 257 -108 1761 271 76 18 chr4 40112818 40112916 -144175746 + L1M4b LINE L1 1413 1504 -5634 2211 106 3 0 chr4 40112916 40113208 -144175454 + AluSp SINE Alu 1 293 -20 1761 271 76 18 chr4 40113208 40114151 -144174511 + L1M4b LINE L1 1504 2686 -4452 2522 62 0 3 chr4 40114167 40114474 -144174188 + AluY SINE Alu 6 311 0 810 236 7 17 chr4 40115298 40115591 -144173071 + AluY SINE Alu 22 311 0 2311 94 0 16 chr4 40115986 40116294 -144172368 + AluSx SINE Alu 1 303 -9 448 286 105 0 chr4 40116789 40116922 -144171740 + MIR SINE MIR 5 151 -111 189 0 0 0 chr4 40117334 40117355 -144171307 + (CA)n Simple_repeat Simple_repeat 2 22 0 1992 158 10 6 chr4 40117425 40117736 -144170926 + AluSx SINE Alu 1 312 0 662 208 23 0 chr4 40118943 40119073 -144169589 + FLAM_A SINE Alu 1 133 0 1910 162 7 0 chr4 40119106 40119403 -144169259 + AluSx SINE Alu 1 299 -13 351 0 0 0 chr4 40119404 40119443 -144169219 + (CA)n Simple_repeat Simple_repeat 2 40 0 1587 152 20 54 chr4 40119446 40119742 -144168920 + AluJo SINE Alu 1 286 -26 457 254 122 70 chr4 40119773 40120027 -144168635 + L1ME LINE L1 5280 5558 -563 2360 94 0 0 chr4 40120027 40120324 -144168338 + AluSc SINE Alu 1 297 -12 457 254 122 70 chr4 40120324 40120412 -144168250 + L1ME LINE L1 5558 5640 -481 2090 116 3 7 chr4 40120424 40120718 -144167944 + AluSg SINE Alu 1 293 -17 483 254 70 0 chr4 40121285 40121399 -144167263 - L2 LINE L2 0 3313 3192 2037 117 34 7 chr4 40121922 40122213 -144166449 - AluSg SINE Alu -11 299 1 2243 92 14 3 chr4 40122299 40122592 -144166070 + AluSp SINE Alu 1 296 -17 230 171 0 0 chr4 40122860 40122895 -144165767 - L2 LINE L2 -95 3218 3184 245 296 131 48 chr4 40123178 40123530 -144165132 + L2 LINE L2 2209 2589 -725 203 260 14 14 chr4 40123546 40123619 -144165043 - MIR SINE MIR -5 257 185 2624 88 9 50 chr4 40123619 40123854 -144164808 + L1PB1 LINE L1 5747 5959 -192 2471 61 0 0 chr4 40123854 40124147 -144164515 + AluY SINE Alu 8 300 -11 2624 88 9 50 chr4 40124147 40124332 -144164330 + L1PB1 LINE L1 5959 6150 -1 29 0 0 0 chr4 40124332 40124361 -144164301 + AT_rich Low_complexity Low_complexity 1 29 0 1965 131 3 48 chr4 40124391 40124525 -144164137 + AluSx SINE Alu 1 139 -173 1987 123 0 11 chr4 40124525 40124810 -144163852 + AluSx SINE Alu 1 282 -30 517 14 14 14 chr4 40124815 40124886 -144163776 + (TAAAA)n Simple_repeat Simple_repeat 2 72 0 1965 131 3 48 chr4 40124886 40125059 -144163603 + AluSx SINE Alu 143 300 -12 1972 126 0 0 chr4 40125413 40125684 -144162978 + AluSx SINE Alu 1 271 -41 225 0 0 0 chr4 40125691 40125716 -144162946 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 3477 195 78 19 chr4 40125773 40126073 -144162589 + L1M4 LINE L1 4053 4334 -1812 1919 71 61 11 chr4 40126073 40126353 -144162309 + AluY SINE Alu 1 294 -17 3477 195 78 19 chr4 40126353 40127022 -144161640 + L1M4 LINE L1 4334 5080 -1066 262 274 42 0 chr4 40128129 40128224 -144160438 - L1MC/D LINE L1 -1942 5866 5768 1912 148 16 16 chr4 40128318 40128628 -144160034 + AluSx SINE Alu 1 310 -2 907 193 12 12 chr4 40128647 40128813 -144159849 + FRAM SINE Alu 1 166 0 450 184 43 85 chr4 40129432 40129573 -144159089 - MIR SINE MIR -54 208 74 209 273 303 0 chr4 40129734 40129800 -144158862 + MIR SINE MIR 3 89 -119 207 0 0 0 chr4 40129867 40129890 -144158772 + (A)n Simple_repeat Simple_repeat 1 23 0 2139 92 7 7 chr4 40131432 40131727 -144156935 + AluSx SINE Alu 1 295 -17 279 238 191 0 chr4 40132141 40132225 -144156437 + MIR SINE MIR 31 130 -132 992 234 224 22 chr4 40132540 40132946 -144155716 + MLT1H1 LTR MaLR 66 553 -2 298 188 0 0 chr4 40132974 40133022 -144155640 + Alu SINE Alu 1 48 -254 5161 125 8 43 chr4 40133057 40133661 -144155001 - Tigger4(Zombi) DNA MER2_type -1489 1242 679 2085 97 0 0 chr4 40133661 40133930 -144154732 - AluSg SINE Alu -13 297 29 5161 125 8 43 chr4 40133930 40134237 -144154425 - Tigger4(Zombi) DNA MER2_type -2052 679 363 667 152 0 97 chr4 40134244 40134389 -144154273 + FLAM_C SINE Alu 1 131 -2 2221 136 0 0 chr4 40134521 40134823 -144153839 - AluSx SINE Alu -10 302 1 2227 119 22 38 chr4 40134836 40135206 -144153456 + THE1B LTR MaLR 1 364 0 12240 73 10 0 chr4 40135206 40136770 -144151892 + THE1B-int LTR MaLR 1 1580 0 2245 123 22 30 chr4 40136770 40137137 -144151525 + THE1B LTR MaLR 1 364 0 224 29 86 0 chr4 40137496 40137531 -144151131 + T-rich Low_complexity Low_complexity 2 39 0 819 125 0 0 chr4 40137531 40137651 -144151011 - FLAM_C SINE Alu -23 120 1 259 89 0 0 chr4 40137982 40138027 -144150635 - Alu SINE Alu 0 301 257 856 119 0 0 chr4 40138037 40138155 -144150507 - AluSq/x SINE Alu -194 119 2 2357 86 3 0 chr4 40138201 40138492 -144150170 + AluSp SINE Alu 1 292 -21 1716 156 7 30 chr4 40138890 40139185 -144149477 - AluSx SINE Alu -19 293 6 1149 65 179 6 chr4 40139314 40139482 -144149180 - AluYa8 SINE Alu -8 302 106 13318 141 18 20 chr4 40140885 40140951 -144147711 - L1MA2 LINE L1 -108 7615 7550 2062 71 93 0 chr4 40140951 40141220 -144147442 - AluSp SINE Alu -19 294 1 13318 141 18 20 chr4 40141220 40141463 -144147199 - L1MA2 LINE L1 -173 7550 7308 2382 100 0 0 chr4 40141463 40141764 -144146898 - AluSg SINE Alu -1 309 9 13318 141 18 20 chr4 40141764 40143288 -144145374 - L1MA2 LINE L1 -415 7308 5783 1685 106 80 4 chr4 40143288 40143590 -144145072 - AluSx SINE Alu 0 322 1 13318 141 18 20 chr4 40143590 40145635 -144143027 - L1MA2 LINE L1 -1940 5783 3741 1162 67 0 0 chr4 40145640 40145790 -144142872 - L1PA8 LINE L1 -104 6068 5919 * 18549 135 27 62 chr4 40145787 40146025 -144142637 - L1MA2 LINE L1 -4338 3227 2982 2150 117 0 17 chr4 40146025 40146325 -144142337 - AluSx SINE Alu -17 295 1 18549 135 27 62 chr4 40146325 40146976 -144141686 - L1MA2 LINE L1 -4583 2982 2310 2199 109 3 3 chr4 40146976 40147280 -144141382 + AluSp SINE Alu 1 304 -9 18549 135 27 62 chr4 40147280 40147369 -144141293 - L1MA2 LINE L1 -5255 2310 2219 1674 124 4 8 chr4 40147369 40147618 -144141044 - AluSp SINE Alu -60 253 6 18549 135 27 62 chr4 40147618 40149965 -144138697 - L1MA2 LINE L1 -5346 2219 17 1612 138 16 81 chr4 40149965 40150140 -144138522 - AluJo SINE Alu -13 299 153 2319 103 0 3 chr4 40150140 40150442 -144138220 - AluSg SINE Alu -9 301 1 1612 138 16 81 chr4 40150442 40150586 -144138076 - AluJo SINE Alu -159 153 1 1573 173 38 0 chr4 40150598 40150887 -144137775 - AluJo SINE Alu -2 310 11 27 29 0 0 chr4 40151043 40151077 -144137585 + AT_rich Low_complexity Low_complexity 1 34 0 2223 108 0 0 chr4 40151125 40151421 -144137241 - AluSq SINE Alu -17 296 1 3717 209 44 92 chr4 40151434 40152100 -144136562 + L1MC4a LINE L1 6568 7265 -543 2289 94 0 10 chr4 40152100 40152426 -144136236 + AluSc SINE Alu 1 323 0 3717 209 44 92 chr4 40152426 40152481 -144136181 + L1MC4a LINE L1 7265 7321 -487 2254 92 0 3 chr4 40152481 40152775 -144135887 + AluSg SINE Alu 1 293 -17 3717 209 44 92 chr4 40152775 40153389 -144135273 + L1MC4a LINE L1 7321 7808 0 835 138 9 0 chr4 40153474 40153590 -144135072 + FLAM_C SINE Alu 2 118 -15 2293 108 0 0 chr4 40153615 40153912 -144134750 + AluSg SINE Alu 1 297 -13 1860 147 0 13 chr4 40154026 40154326 -144134336 + AluJb SINE Alu 1 296 -16 878 221 0 17 chr4 40154392 40154564 -144134098 - FRAM SINE Alu -7 169 1 2555 257 93 33 chr4 40154582 40155480 -144133182 + L2 LINE L2 1997 2948 -366 194 0 0 37 chr4 40155748 40155775 -144132887 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 748 265 53 8 chr4 40156044 40156127 -144132535 + HAL1 LINE L1 1548 1626 -881 2134 108 11 0 chr4 40156127 40156457 -144132205 - AluSg SINE Alu 0 333 1 748 265 53 8 chr4 40156457 40156617 -144132045 + HAL1 LINE L1 1626 1803 -704 538 247 171 65 chr4 40156722 40157042 -144131620 + HAL1 LINE L1 1691 1976 -531 2329 110 0 7 chr4 40157042 40157352 -144131310 + AluSx SINE Alu 1 308 -4 538 247 171 65 chr4 40157352 40157582 -144131080 + HAL1 LINE L1 1976 2299 -208 2094 130 3 7 chr4 40157590 40157898 -144130764 + AluSx SINE Alu 1 307 -5 705 142 16 8 chr4 40158010 40158137 -144130525 + L1MB8 LINE L1 6051 6178 0 3974 111 5 12 chr4 40158214 40158790 -144129872 + L1MA5 LINE L1 5723 6294 -6 707 213 0 0 chr4 40158814 40158936 -144129726 + FLAM_A SINE Alu 6 127 -15 279 216 0 0 chr4 40158978 40159029 -144129633 + L3 LINE CR1 1525 1575 -2 2095 142 0 0 chr4 40159177 40159473 -144129189 + AluSx SINE Alu 3 298 -14 1642 185 29 77 chr4 40159532 40159728 -144128934 - MLT1A1 LTR MaLR 0 365 161 1255 158 224 8 chr4 40159728 40159982 -144128680 + AluSg SINE Alu 1 309 -1 1642 185 29 77 chr4 40159982 40160010 -144128652 - MLT1A1 LTR MaLR -204 161 133 2217 91 31 0 chr4 40160010 40160297 -144128365 - AluSg SINE Alu -14 296 1 1642 185 29 77 chr4 40160297 40160450 -144128212 - MLT1A1 LTR MaLR -232 133 5 1873 150 6 31 chr4 40160602 40160922 -144127740 - AluJb SINE Alu 0 312 1 1018 96 22 0 chr4 40160923 40161059 -144127603 - AluJb SINE Alu -171 141 3 1277 171 3 108 chr4 40161133 40161305 -144127357 - AluSp SINE Alu -28 285 97 3002 140 17 42 chr4 40161305 40161336 -144127326 - L1MB3 LINE L1 -2 6181 6151 2198 99 17 14 chr4 40161336 40161465 -144127197 + AluSg SINE Alu 1 128 -182 2674 42 0 0 chr4 40161465 40161776 -144126886 + AluY SINE Alu 1 311 0 2198 99 17 14 chr4 40161776 40161940 -144126722 + AluSg SINE Alu 128 295 -15 3002 140 17 42 chr4 40161940 40162435 -144126227 - L1MB3 LINE L1 -32 6151 5668 1760 137 54 7 chr4 40162435 40162734 -144125928 - AluSg SINE Alu 0 310 5 1277 171 3 108 chr4 40162734 40162847 -144125815 - AluSp SINE Alu -214 99 29 1186 194 16 25 chr4 40162861 40163103 -144125559 - L1MB3 LINE L1 -510 5673 5434 2365 107 3 0 chr4 40163294 40163602 -144125060 - AluSg SINE Alu -1 309 1 1212 187 9 23 chr4 40163640 40163859 -144124803 - AluJb SINE Alu -12 300 85 356 217 12 12 chr4 40163862 40163945 -144124717 - L1MB3 LINE L1 -1768 4378 4296 570 167 73 0 chr4 40163945 40164041 -144124621 + U6 snRNA snRNA 1 103 -4 231 174 43 0 chr4 40164048 40164094 -144124568 + Alu SINE Alu 85 132 -1 244 254 0 0 chr4 40164151 40164206 -144124456 + A-rich Low_complexity Low_complexity 1 55 0 2093 123 10 23 chr4 40164216 40164526 -144124136 + AluSx SINE Alu 1 306 -6 2232 101 0 0 chr4 40164526 40164813 -144123849 + AluY SINE Alu 1 287 -24 321 243 156 10 chr4 40164813 40164947 -144123715 + MLT1C LTR MaLR 212 388 -117 1025 241 15 23 chr4 40165138 40165403 -144123259 - L1MB3 LINE L1 -1839 4307 4045 963 217 6 0 chr4 40165411 40165577 -144123085 - FAM SINE Alu -7 168 2 2192 118 3 10 chr4 40165639 40165944 -144122718 - AluSx SINE Alu -9 303 1 679 301 91 72 chr4 40166094 40166374 -144122288 - L1ME4a LINE L1 -260 5861 5588 1659 124 167 8 chr4 40166374 40166632 -144122030 + AluSg SINE Alu 1 299 -1 956 220 0 12 chr4 40166634 40166802 -144121860 + AluJo/FRAM SINE Alu 137 302 0 282 116 0 0 chr4 40166810 40166853 -144121809 + (TA)n Simple_repeat Simple_repeat 1 43 0 679 301 91 72 chr4 40166853 40166960 -144121702 - L1ME4a LINE L1 -539 5582 5479 2399 77 3 3 chr4 40166960 40167260 -144121402 + AluSx SINE Alu 1 300 -12 679 301 91 72 chr4 40167260 40167440 -144121222 - L1ME4a LINE L1 -642 5479 5270 48 53 0 0 chr4 40167510 40167586 -144121076 + AT_rich Low_complexity Low_complexity 1 76 0 283 186 47 23 chr4 40167644 40167730 -144120932 - L1MB2 LINE L1 0 6171 6084 880 174 0 0 chr4 40167947 40168079 -144120583 - FLAM_C SINE Alu -1 132 1 287 284 95 21 chr4 40168093 40168188 -144120474 - L2 LINE L2 -2 3270 3169 261 57 0 0 chr4 40168200 40168235 -144120427 + (GA)n Simple_repeat Simple_repeat 2 36 0 1977 87 33 4 chr4 40168391 40168667 -144119995 + L1PA13 LINE L1 5880 6163 0 2556 47 0 0 chr4 40168682 40168982 -144119680 + AluY SINE Alu 1 300 -11 288 176 0 0 chr4 40169205 40169256 -144119406 - MIR SINE MIR -25 237 187 427 183 349 0 chr4 40169291 40169417 -144119245 - MIR SINE MIR -62 200 31 2435 93 3 0 chr4 40169438 40169750 -144118912 - AluSq SINE Alu 0 313 1 732 180 0 39 chr4 40169759 40169887 -144118775 - FLAM_A SINE Alu -10 123 1 1201 185 0 10 chr4 40169951 40170180 -144118482 - AluJo SINE Alu 0 312 86 2175 130 10 0 chr4 40170390 40170698 -144117964 - AluSx SINE Alu -1 311 1 1672 168 11 7 chr4 40170735 40171021 -144117641 + AluJo SINE Alu 1 287 -25 33 80 0 0 chr4 40171021 40171096 -144117566 + AT_rich Low_complexity Low_complexity 1 75 0 201 122 0 49 chr4 40172982 40173023 -144115639 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 652 290 6 0 chr4 40173261 40173437 -144115225 - MIR SINE MIR 0 262 86 1300 132 6 0 chr4 40174085 40174267 -144114395 - AluSg/x SINE Alu -10 300 118 2213 109 13 0 chr4 40174409 40174712 -144113950 + AluSg SINE Alu 1 307 -3 21 0 0 0 chr4 40175127 40175148 -144113514 + AT_rich Low_complexity Low_complexity 1 21 0 1513 71 33 19 chr4 40175808 40176045 -144112617 - AluSp SINE Alu 0 308 69 861 64 0 0 chr4 40176070 40176229 -144112433 - AluSg/x SINE Alu 0 333 175 1209 101 0 0 chr4 40176288 40176447 -144112215 - AluSg/x SINE Alu -17 295 137 476 126 320 39 chr4 40176500 40176603 -144112059 + FLAM_C SINE Alu 1 132 -1 524 134 12 0 chr4 40176614 40176696 -144111966 + L1PB3 LINE L1 5868 5950 -204 302 87 12 22 chr4 40176704 40176759 -144111903 - L1PB3 LINE L1 -192 5959 5905 1252 136 10 20 chr4 40176788 40176987 -144111675 + L1PB3 LINE L1 5956 6152 -2 182 229 125 0 chr4 40177056 40177104 -144111558 - MIR SINE MIR -76 186 133 394 306 106 68 chr4 40177374 40177609 -144111053 + L2 LINE L2 3026 3269 -3 532 207 26 9 chr4 40177721 40177837 -144110825 - MLT1K LTR MaLR 0 588 471 1644 172 3 50 chr4 40178191 40178531 -144110131 + AluJb SINE Alu 1 326 0 1186 145 18 61 chr4 40178657 40178885 -144109777 - MER20 DNA MER1_type -1 218 1 2434 97 0 0 chr4 40179352 40179660 -144109002 + AluSg SINE Alu 1 308 -2 1435 116 5 0 chr4 40179776 40179975 -144108687 - AluSx SINE Alu -112 200 1 949 218 0 0 chr4 40180110 40180275 -144108387 + FRAM SINE Alu 1 165 -1 26 50 0 0 chr4 40180399 40180439 -144108223 + AT_rich Low_complexity Low_complexity 1 40 0 279 0 0 0 chr4 40180871 40180902 -144107760 + (CA)n Simple_repeat Simple_repeat 2 32 0 236 242 74 21 chr4 40181000 40181095 -144107567 + L1MC5 LINE L1 7832 7931 -30 1658 189 13 17 chr4 40181261 40181562 -144107100 + AluJo SINE Alu 1 300 -12 1826 122 76 0 chr4 40182067 40182357 -144106305 - AluSp SINE Alu 0 310 1 477 303 72 10 chr4 40182486 40182683 -144105979 - MIR SINE MIR -10 252 45 2074 109 20 10 chr4 40183006 40183300 -144105362 - AluSx SINE Alu -15 297 1 2084 143 13 0 chr4 40183428 40183735 -144104927 + AluSx SINE Alu 1 311 -1 2259 99 10 10 chr4 40184254 40184557 -144104105 + AluSx SINE Alu 1 303 -9 1296 118 0 0 chr4 40184557 40184726 -144103936 + AluSq SINE Alu 134 302 -11 1889 151 35 3 chr4 40185293 40185578 -144103084 - AluJb SINE Alu -18 294 1 256 240 50 84 chr4 40185582 40185761 -144102901 - L1ME4a LINE L1 -3 6118 5946 1976 144 7 17 chr4 40186230 40186529 -144102133 + AluSx SINE Alu 1 296 -16 1989 121 7 4 chr4 40186529 40186808 -144101854 - AluSx SINE Alu -31 281 1 341 277 66 108 chr4 40186981 40187147 -144101515 + MIR3 SINE MIR 30 188 -20 633 296 17 0 chr4 40187191 40187363 -144101299 + MIR SINE MIR 88 262 0 2276 100 0 17 chr4 40187528 40187829 -144100833 - AluSx SINE Alu -16 296 1 187 115 0 0 chr4 40188306 40188332 -144100330 + MIR SINE MIR 49 74 -188 281 252 126 39 chr4 40188442 40188569 -144100093 - L2 LINE L2 -3 3269 3132 28 0 0 0 chr4 40188605 40188633 -144100029 + AT_rich Low_complexity Low_complexity 1 28 0 661 139 191 0 chr4 40188667 40188782 -144099880 + AluJo SINE Alu 2 138 -174 2176 128 3 3 chr4 40188827 40189132 -144099530 - AluJb SINE Alu -6 306 2 372 247 0 0 chr4 40189239 40189324 -144099338 - MER69 DNA AcHobo -2441 85 1 21 0 0 0 chr4 40189352 40189373 -144099289 + AT_rich Low_complexity Low_complexity 1 21 0 2229 109 10 0 chr4 40189389 40189691 -144098971 - AluSx SINE Alu -7 305 1 1897 148 0 40 chr4 40190201 40190504 -144098158 - AluJb SINE Alu -21 291 1 2204 110 3 16 chr4 40190598 40190734 -144097928 + AluSx SINE Alu 1 137 -175 2262 88 3 0 chr4 40190734 40191028 -144097634 + AluY SINE Alu 1 295 -16 2204 110 3 16 chr4 40191028 40191201 -144097461 + AluSx SINE Alu 137 306 -6 1777 153 7 17 chr4 40191453 40191747 -144096915 - AluJo SINE Alu -17 295 5 523 191 0 0 chr4 40191857 40191946 -144096716 + FLAM SINE Alu 43 131 -12 2329 103 0 0 chr4 40191963 40192264 -144096398 + AluSx SINE Alu 1 301 -11 353 340 16 24 chr4 40192547 40192736 -144095926 - MIR SINE MIR -55 207 20 2357 106 0 3 chr4 40192909 40193221 -144095441 + AluSq SINE Alu 3 313 0 27 49 0 0 chr4 40193441 40193482 -144095180 + AT_rich Low_complexity Low_complexity 1 41 0 2199 93 0 7 chr4 40193482 40193771 -144094891 - AluSq SINE Alu -26 287 1 2201 112 0 29 chr4 40195356 40195670 -144092992 - AluSx SINE Alu -5 307 3 1826 153 3 42 chr4 40195678 40195991 -144092671 - AluJb SINE Alu -11 301 1 2351 67 3 27 chr4 40196014 40196313 -144092349 - AluSp SINE Alu -21 292 1 2177 119 3 0 chr4 40196767 40197062 -144091600 + AluSx SINE Alu 1 296 -16 23 0 0 0 chr4 40197280 40197303 -144091359 + AT_rich Low_complexity Low_complexity 1 23 0 659 275 66 41 chr4 40197540 40197644 -144091018 - MIR SINE MIR 0 262 162 2240 105 0 3 chr4 40197644 40197940 -144090722 - AluSq SINE Alu -16 297 3 659 275 66 41 chr4 40197940 40198095 -144090567 - MIR SINE MIR -100 162 4 540 226 16 8 chr4 40198131 40198255 -144090407 - MIR SINE MIR 0 262 138 2378 109 0 0 chr4 40198340 40198651 -144090011 + AluSx SINE Alu 1 311 -1 2359 92 0 0 chr4 40199575 40199869 -144088793 - AluSx SINE Alu -18 294 1 2045 125 10 3 chr4 40199891 40200180 -144088482 - AluSx SINE Alu -21 291 1 2351 109 0 0 chr4 40200185 40200488 -144088174 - AluSq SINE Alu -10 303 1 2373 102 0 9 chr4 40201457 40201772 -144086890 - AluSq SINE Alu -1 312 1 359 261 23 0 chr4 40201817 40201905 -144086757 - MIR3 SINE MIR -8 200 111 216 272 152 11 chr4 40202927 40203019 -144085643 - L2 LINE L2 -22 3250 3146 608 256 103 51 chr4 40203206 40203518 -144085144 + L2 LINE L2 2984 3311 -2 21 0 0 0 chr4 40203534 40203555 -144085107 + AT_rich Low_complexity Low_complexity 1 21 0 304 270 0 14 chr4 40203586 40203660 -144085002 - MIR3 SINE MIR -21 187 115 1653 193 17 3 chr4 40203766 40204061 -144084601 - AluJo SINE Alu -13 299 1 277 276 0 0 chr4 40204075 40204133 -144084529 - MIR SINE MIR -115 147 90 2109 95 0 89 chr4 40204217 40204421 -144084241 - AluSx SINE Alu -1 311 147 2161 120 0 23 chr4 40204421 40204730 -144083932 - AluSq SINE Alu -11 302 1 2109 95 0 89 chr4 40204730 40204863 -144083799 - AluSx SINE Alu -165 147 4 2186 129 3 3 chr4 40204896 40205206 -144083456 - AluSx SINE Alu 0 312 3 1646 121 106 4 chr4 40205355 40205620 -144083042 - AluSq SINE Alu -21 292 1 1967 155 7 0 chr4 40205627 40205918 -144082744 - AluSx SINE Alu -19 293 1 383 337 12 66 chr4 40207600 40207723 -144080939 - MLT1K LTR MaLR -378 210 82 671 125 21 0 chr4 40207723 40207819 -144080843 + HY3 scRNA scRNA 1 98 -3 405 0 0 0 chr4 40207824 40207869 -144080793 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 383 337 12 66 chr4 40207869 40207905 -144080757 - MLT1K LTR MaLR -510 78 54 1834 128 40 40 chr4 40208018 40208314 -144080348 + AluJb SINE Alu 1 296 -16 2089 209 184 87 chr4 40208385 40208494 -144080168 - L1MC4 LINE L1 -1 8041 7944 2294 98 0 3 chr4 40208494 40208791 -144079871 - AluSg SINE Alu -14 296 1 2089 209 184 87 chr4 40208791 40209299 -144079363 - L1MC4 LINE L1 -98 7944 7487 568 210 0 57 chr4 40209299 40209423 -144079239 + FLAM_C SINE Alu 1 117 -16 2089 209 184 87 chr4 40209423 40209521 -144079141 - L1MC4 LINE L1 -555 7487 7400 1916 132 6 49 chr4 40209521 40209846 -144078816 + AluSx SINE Alu 1 311 -1 2089 209 184 87 chr4 40209846 40209935 -144078727 - L1MC4 LINE L1 -642 7400 7321 2260 79 7 0 chr4 40209935 40210243 -144078419 + AluSq SINE Alu 1 310 0 2089 209 184 87 chr4 40210243 40210598 -144078064 - L1MC4 LINE L1 -721 7321 6765 209 337 12 0 chr4 40211252 40211335 -144077327 - MIR SINE MIR -71 191 108 2267 86 0 55 chr4 40211553 40211880 -144076782 - AluSp SINE Alu -4 309 1 420 109 94 0 chr4 40212279 40212343 -144076319 + AluJ/FLAM SINE Alu 2 71 -241 579 108 36 0 chr4 40213958 40214041 -144074621 - L1MA1 LINE L1 -9 6293 6208 205 330 43 32 chr4 40214041 40214128 -144074534 - L2 LINE L2 -1999 1315 1225 1995 121 26 10 chr4 40215203 40215509 -144073153 + AluSq SINE Alu 1 311 -2 2273 110 3 0 chr4 40215804 40216114 -144072548 + AluSx SINE Alu 1 311 -1 1595 170 52 0 chr4 40217848 40218118 -144070544 + AluJb SINE Alu 4 287 -25 502 289 168 36 chr4 40218528 40218892 -144069770 - L2 LINE L2 -35 3278 2867 248 288 280 0 chr4 40218967 40219085 -144069577 - L2 LINE L2 -561 2753 2603 1055 202 61 34 chr4 40219352 40219614 -144069048 + AluJo SINE Alu 11 279 -33 344 181 133 29 chr4 40219864 40219969 -144068693 - L2 LINE L2 -2447 867 752 1611 105 5 5 chr4 40221478 40221697 -144066965 + AluSc SINE Alu 1 219 -90 658 200 0 0 chr4 40221855 40221960 -144066702 + AluJo SINE Alu 38 142 -170 1115 177 19 0 chr4 40221980 40222189 -144066473 + AluJb SINE Alu 79 291 -21 735 174 45 39 chr4 40222384 40222539 -144066123 + L1MA7 LINE L1 6132 6287 -4 189 281 156 31 chr4 40223221 40223317 -144065345 - L2 LINE L2 -7 3265 3158 684 133 117 33 chr4 40223658 40223778 -144064884 + FLAM_C SINE Alu 2 131 -2 301 224 37 65 chr4 40225641 40225748 -144062914 - MIR SINE MIR 0 262 159 1764 66 4 4 chr4 40226172 40226398 -144062264 + AluSc SINE Alu 84 309 0 2604 40 0 10 chr4 40226658 40226961 -144061701 + AluY SINE Alu 1 300 -11 2274 106 7 0 chr4 40228099 40228401 -144060261 - AluSg SINE Alu -6 304 1 34 24 0 0 chr4 40228751 40228792 -144059870 + AT_rich Low_complexity Low_complexity 1 41 0 1992 119 14 10 chr4 40229111 40229404 -144059258 + AluSx SINE Alu 1 294 -18 619 220 113 12 chr4 40229507 40229675 -144058987 - AluJb SINE Alu -14 298 114 305 180 20 0 chr4 40229778 40229828 -144058834 - Alu SINE Alu -252 51 1 1825 168 3 20 chr4 40230497 40230801 -144057861 + AluJb SINE Alu 1 299 -13 1453 174 71 18 chr4 40230945 40231227 -144057435 - AluJo SINE Alu -15 297 1 351 250 22 1 chr4 40231357 40231469 -144057193 - L1ME3 LINE L1 -211 5951 5837 1977 114 28 0 chr4 40232117 40232406 -144056256 - AluSx SINE Alu -15 297 1 1727 144 7 31 chr4 40232408 40232699 -144055963 - AluJo SINE Alu -3 309 26 330 250 36 36 chr4 40232766 40232878 -144055784 + MER112 DNA MER1_type 138 249 -11 1472 165 55 52 chr4 40232887 40233178 -144055484 + AluJo SINE Alu 3 294 -18 32 81 0 0 chr4 40234343 40234417 -144054245 + AT_rich Low_complexity Low_complexity 1 74 0 2224 105 7 10 chr4 40234647 40234952 -144053710 + AluSp SINE Alu 1 304 -9 341 95 16 0 chr4 40234952 40235015 -144053647 + (TA)n Simple_repeat Simple_repeat 2 65 0 2019 112 35 11 chr4 40235057 40235344 -144053318 + AluSx SINE Alu 12 305 -7 270 151 0 0 chr4 40236740 40236793 -144051869 + L1PA15 LINE L1 6112 6164 -1 204 304 36 0 chr4 40237477 40237533 -144051129 + L2 LINE L2 3182 3239 -33 2024 131 0 64 chr4 40237776 40237967 -144050695 - AluSq SINE Alu -6 307 144 2264 103 10 13 chr4 40237967 40238277 -144050385 - AluSx SINE Alu -3 309 1 2024 131 0 64 chr4 40238277 40238413 -144050249 - AluSq SINE Alu -169 144 1 2002 113 33 95 chr4 40238413 40238560 -144050102 - Tigger2a DNA MER2_type -2334 374 219 318 106 0 0 chr4 40238560 40238607 -144050055 + (CA)n Simple_repeat Simple_repeat 2 48 0 2002 113 33 95 chr4 40238607 40238858 -144049804 - Tigger2a DNA MER2_type -2489 219 1 334 290 100 0 chr4 40239104 40239204 -144049458 - L2 LINE L2 0 3272 3163 2426 72 7 3 chr4 40240432 40240738 -144047924 + AluY SINE Alu 1 307 -4 907 151 36 18 chr4 40240741 40240907 -144047755 + AluJo/FRAM SINE Alu 137 305 -7 706 216 0 0 chr4 40240914 40241030 -144047632 + FLAM_A SINE Alu 1 116 -26 592 173 10 0 chr4 40241035 40241139 -144047523 - AluSg/x SINE Alu -2 308 204 382 316 96 3 chr4 40241297 40241489 -144047173 - MIR SINE MIR -10 252 45 2074 109 20 10 chr4 40241812 40242106 -144046556 - AluSx SINE Alu -15 297 1 2084 143 13 0 chr4 40242234 40242541 -144046121 + AluSx SINE Alu 1 311 -1 1825 109 18 21 chr4 40243060 40243376 -144045286 + AluSx SINE Alu 1 315 0 2089 112 3 45 chr4 40243544 40243858 -144044804 + AluJb SINE Alu 1 301 -11 2359 105 0 0 chr4 40245209 40245515 -144043147 + AluSq SINE Alu 1 306 -7 1649 159 39 25 chr4 40245668 40245951 -144042711 + AluJb SINE Alu 6 292 -20 1988 145 7 0 chr4 40246184 40246473 -144042189 + AluSx SINE Alu 1 291 -21 1772 164 18 7 chr4 40246893 40247179 -144041483 + AluSx SINE Alu 2 290 -22 2142 117 17 3 chr4 40247198 40247496 -144041166 + AluSx SINE Alu 1 302 -10 1896 124 44 0 chr4 40247555 40247830 -144040832 - AluSx SINE Alu -17 295 9 1807 136 31 7 chr4 40248029 40248316 -144040346 + AluSx SINE Alu 1 294 -18 30 0 0 0 chr4 40249728 40249758 -144038904 + AT_rich Low_complexity Low_complexity 1 30 0 22 56 0 0 chr4 40250021 40250057 -144038605 + AT_rich Low_complexity Low_complexity 1 36 0 1774 149 29 0 chr4 40250141 40250445 -144038217 - AluSx SINE Alu 0 312 1 1057 98 0 0 chr4 40250448 40250581 -144038081 - AluSq/x SINE Alu -179 133 1 835 235 109 20 chr4 40250601 40250848 -144037814 + MLT1J LTR MaLR 203 471 -40 2201 115 0 3 chr4 40251244 40251540 -144037122 - AluY SINE Alu -16 295 1 1769 165 7 29 chr4 40251540 40251849 -144036813 - AluJb SINE Alu -10 302 1 378 179 60 0 chr4 40251880 40251947 -144036715 + AluJ/FRAM SINE Alu 228 298 -4 2058 130 10 7 chr4 40251949 40252235 -144036427 + AluSq SINE Alu 1 290 -23 315 0 0 0 chr4 40252235 40252270 -144036392 + (CA)n Simple_repeat Simple_repeat 2 36 0 2058 130 10 7 chr4 40252270 40252284 -144036378 + AluSq SINE Alu 290 302 -11 1579 150 24 12 chr4 40252353 40252606 -144036056 - AluJb SINE Alu -22 290 35 1323 218 127 19 chr4 40252628 40253107 -144035555 + LTR61 LTR ERV1 16 595 0 2145 153 30 14 chr4 40253107 40253474 -144035188 + HERV3 LTR ERV1 2 374 -8052 587 176 0 0 chr4 40253493 40253584 -144035078 + HERV3 LTR ERV1 894 984 -7442 * 10662 167 2 2 chr4 40253572 40255197 -144033465 + HERV3 LTR ERV1 1332 2957 -5469 * 11972 154 6 16 chr4 40255187 40255471 -144033191 + HERV3 LTR ERV1 4258 4543 -3883 2447 58 3 0 chr4 40255471 40255764 -144032898 + AluY SINE Alu 1 294 -17 11972 154 6 16 chr4 40255764 40257399 -144031263 + HERV3 LTR ERV1 4543 6221 -2205 2440 71 0 0 chr4 40257399 40257694 -144030968 + AluY SINE Alu 1 295 -16 1010 251 5 0 chr4 40257697 40257896 -144030766 + HERV3 LTR ERV1 6381 6580 -1846 * 1534 222 46 10 chr4 40257895 40258201 -144030461 + HERV3 LTR ERV1 8110 8426 0 334 302 0 54 chr4 40258225 40258354 -144030308 + LTR4 LTR ERV1 16 137 -459 485 120 0 6 chr4 40258389 40258470 -144030192 - L1MB4 LINE L1 -36 6138 6066 2301 90 10 0 chr4 40258951 40259240 -144029422 - AluSq SINE Alu -21 292 1 1913 128 7 20 chr4 40259493 40259656 -144029006 - AluSx SINE Alu -16 296 137 2095 113 20 0 chr4 40259656 40259949 -144028713 - AluSq SINE Alu -14 299 1 1913 128 7 20 chr4 40259949 40260083 -144028579 - AluSx SINE Alu -175 137 3 1211 124 11 0 chr4 40260156 40260333 -144028329 - AluSg/x SINE Alu 0 310 132 2238 121 0 0 chr4 40260333 40260638 -144028024 - AluSq SINE Alu -8 305 1 879 261 128 47 chr4 40260724 40261230 -144027432 - MLT1L LTR MaLR -61 554 8 614 276 25 5 chr4 40261233 40261432 -144027230 - MIR SINE MIR -8 254 52 460 179 0 12 chr4 40261449 40261533 -144027129 + L1MC4 LINE L1 7176 7258 -784 2174 92 3 7 chr4 40261536 40261852 -144026810 - AluSx SINE Alu 0 315 1 1422 181 127 0 chr4 40261854 40262113 -144026549 - AluJb SINE Alu -20 292 1 2269 220 46 15 chr4 40262146 40262600 -144026062 + MLT1F LTR MaLR 6 473 -69 295 90 45 252 chr4 40262602 40262648 -144026014 + L1MC4 LINE L1 7836 7890 -152 2076 119 61 3 chr4 40262648 40262941 -144025721 - AluSx SINE Alu -2 310 1 295 90 45 252 chr4 40262941 40263049 -144025613 + L1MC4 LINE L1 7890 7958 -84 255 128 0 21 chr4 40263151 40263198 -144025464 + L1MC4 LINE L1 7992 8037 -5 301 262 87 56 chr4 40263219 40263345 -144025317 + Charlie8 DNA MER1_type 11 140 -2277 1237 108 30 0 chr4 40263346 40263512 -144025150 + AluSq SINE Alu 126 296 -17 277 222 32 0 chr4 40263750 40263813 -144024849 + MIR SINE MIR 56 120 -142 289 304 74 40 chr4 40264062 40264210 -144024452 - MIR SINE MIR -20 242 90 2492 80 3 0 chr4 40264316 40264618 -144024044 - AluSp SINE Alu -10 303 1 32 0 0 0 chr4 40264729 40264761 -144023901 + AT_rich Low_complexity Low_complexity 1 32 0 2000 141 7 3 chr4 40264977 40265275 -144023387 - AluJb SINE Alu -13 299 1 2079 70 48 7 chr4 40265357 40265657 -144023005 - AluSq SINE Alu 0 312 2 687 146 23 8 chr4 40265826 40265956 -144022706 + AluSg/x SINE Alu 177 308 -1 581 160 30 0 chr4 40266291 40266391 -144022271 - MER58 DNA MER1_type 0 2420 2318 643 129 29 107 chr4 40266409 40266549 -144022113 - FLAM_C SINE Alu -12 131 3 2233 134 0 6 chr4 40266876 40267190 -144021472 - AluSx SINE Alu 0 312 1 6327 105 14 2 chr4 40267214 40268078 -144020584 - THE1B-int LTR MaLR -706 874 1 2308 122 44 20 chr4 40268078 40268421 -144020241 - THE1B LTR MaLR 0 364 14 736 183 28 0 chr4 40268462 40268604 -144020058 - AluJb SINE Alu -3 309 164 770 96 128 4 chr4 40268604 40268744 -144019918 + THE1B LTR MaLR 4 182 -182 1037 124 19 12 chr4 40268746 40268907 -144019755 + AluSq SINE Alu 137 298 -15 1026 120 47 58 chr4 40268907 40269098 -144019564 + THE1B LTR MaLR 176 364 0 11138 75 1 119 chr4 40269098 40269468 -144019194 + THE1B-int LTR MaLR 1 413 -1167 839 164 127 11 chr4 40269468 40269657 -144019005 - AluSq SINE Alu -13 300 90 11138 75 1 119 chr4 40269657 40269724 -144018938 + THE1B-int LTR MaLR 413 486 -1094 2210 117 3 0 chr4 40269724 40270024 -144018638 + AluSg SINE Alu 1 301 -9 11138 75 1 119 chr4 40270024 40271189 -144017473 + THE1B-int LTR MaLR 486 1580 0 1743 118 103 63 chr4 40271190 40271283 -144017379 + THE1B LTR MaLR 2 90 -274 2226 106 13 0 chr4 40271283 40271585 -144017077 + AluSq SINE Alu 1 306 -7 1743 118 103 63 chr4 40271585 40271770 -144016892 + THE1B LTR MaLR 90 299 -65 2462 73 0 13 chr4 40271770 40272084 -144016578 - AluY SINE Alu 0 311 2 1743 118 103 63 chr4 40272084 40272153 -144016509 + THE1B LTR MaLR 299 364 0 570 248 116 10 chr4 40272153 40272351 -144016311 + Charlie2 DNA MER1_type 253 471 -2311 330 234 117 29 chr4 40272826 40272963 -144015699 + MLT1J LTR MaLR 312 460 -51 866 299 148 28 chr4 40273007 40273626 -144015036 + L2 LINE L2 2357 3050 -263 733 233 25 117 chr4 40273630 40273956 -144014706 + AluJo SINE Alu 3 298 -4 2174 91 4 0 chr4 40273968 40274242 -144014420 - AluSg SINE Alu -25 285 11 1796 172 3 7 chr4 40274342 40274639 -144014023 - AluJb SINE Alu -16 296 1 1940 130 11 28 chr4 40274642 40274956 -144013706 - AluSx SINE Alu 0 313 5 21 0 0 0 chr4 40274963 40274984 -144013678 + AT_rich Low_complexity Low_complexity 1 21 0 869 142 0 0 chr4 40275201 40275328 -144013334 - FLAM_C SINE Alu -6 127 1 2826 129 0 14 chr4 40275768 40276203 -144012459 - LTR3 LTR ERVK 0 429 1 9167 229 10 3 chr4 40276206 40278050 -144010612 - HERVK3 LTR ERVK -2 7241 5384 7890 146 5 2 chr4 40278051 40279287 -144009375 - HERVK3 LTR ERVK -2054 5189 3950 6366 138 21 4 chr4 40279285 40280284 -144008378 - HERVK3 LTR ERVK -5757 1486 471 * 721 111 238 47 chr4 40280272 40280444 -144008218 - HERVK3 LTR ERVK -6971 272 68 * 2737 133 12 12 chr4 40280461 40280890 -144007772 - LTR3 LTR ERVK 0 429 1 1725 145 41 0 chr4 40280891 40281160 -144007502 + AluJb SINE Alu 14 293 -19 1252 175 16 29 chr4 40281733 40281979 -144006683 - AluJo SINE Alu -21 291 49 2434 78 3 7 chr4 40281999 40282308 -144006354 + AluSc SINE Alu 1 308 -1 2371 97 0 3 chr4 40282351 40282660 -144006002 + AluSg SINE Alu 1 308 -2 2351 100 3 0 chr4 40284427 40284726 -144003936 - AluSp SINE Alu -13 300 1 231 36 0 0 chr4 40284778 40284806 -144003856 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 911 131 15 0 chr4 40284883 40285013 -144003649 - FLAM_C SINE Alu -11 132 1 2131 126 7 0 chr4 40285434 40285735 -144002927 + AluSq SINE Alu 1 303 -10 1944 125 39 0 chr4 40285814 40286095 -144002567 - AluSx SINE Alu -20 292 1 2249 116 3 0 chr4 40286800 40287103 -144001559 - AluSx SINE Alu -8 304 1 22 0 0 0 chr4 40287315 40287337 -144001325 + AT_rich Low_complexity Low_complexity 1 22 0 2270 106 7 7 chr4 40287428 40287731 -144000931 - AluSx SINE Alu -9 303 1 40 59 0 0 chr4 40288694 40288762 -143999900 + AT_rich Low_complexity Low_complexity 1 68 0 256 255 128 28 chr4 40289202 40289343 -143999319 + MLT1K LTR MaLR 418 572 -16 2332 99 3 7 chr4 40289579 40289881 -143998781 - AluSx SINE Alu -11 301 1 2373 97 0 0 chr4 40290114 40290412 -143998250 - AluSq SINE Alu -15 298 1 885 128 15 0 chr4 40290709 40290842 -143997820 + AluSq/x SINE Alu 1 135 -178 2111 142 0 0 chr4 40290842 40291144 -143997518 + AluSx SINE Alu 1 302 -10 201 74 0 0 chr4 40291165 40291192 -143997470 + (T)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr4 40291212 40291233 -143997429 + AT_rich Low_complexity Low_complexity 1 21 0 517 148 28 9 chr4 40291235 40291343 -143997319 - L1MA8 LINE L1 -2 6289 6180 2490 88 0 0 chr4 40291347 40291652 -143997010 - AluSq SINE Alu -8 305 1 2040 132 3 3 chr4 40291753 40292049 -143996613 - AluSx SINE Alu -16 296 1 1142 149 55 10 chr4 40292492 40292693 -143995969 + AluJo SINE Alu 87 296 -16 1117 167 40 44 chr4 40293362 40293589 -143995073 - AluJo SINE Alu -10 302 77 2272 105 10 0 chr4 40293591 40293887 -143994775 - AluSx SINE Alu -13 299 1 323 164 27 55 chr4 40293887 40293960 -143994702 - AluJo SINE Alu -155 147 77 233 276 0 0 chr4 40294669 40294727 -143993935 + L2 LINE L2 3251 3308 -5 494 151 0 0 chr4 40294782 40294855 -143993807 + AluJ/FLAM SINE Alu 2 74 -238 2385 90 7 0 chr4 40295974 40296273 -143992389 + AluY SINE Alu 1 301 -10 2266 109 10 0 chr4 40296874 40297176 -143991486 - AluSx SINE Alu -4 308 4 2252 95 0 10 chr4 40297195 40297491 -143991171 - AluSg SINE Alu -17 293 1 2531 51 3 0 chr4 40297502 40297798 -143990864 - AluY SINE Alu -14 297 1 331 287 208 5 chr4 40297798 40298000 -143990662 + MIR SINE MIR 8 250 -12 1815 168 3 13 chr4 40298977 40299139 -143989523 - AluSx SINE Alu -17 295 136 2360 103 0 0 chr4 40299139 40299439 -143989223 - AluSg SINE Alu -9 301 2 1815 168 3 13 chr4 40299439 40299574 -143989088 - AluSx SINE Alu -176 136 1 357 156 47 0 chr4 40299993 40300057 -143988605 + MLT2C1 LTR ERVL 1 67 -330 2538 75 0 0 chr4 40300252 40300560 -143988102 + AluY SINE Alu 1 308 -3 1047 193 176 35 chr4 40300790 40301120 -143987542 - Tigger7 DNA MER2_type 0 2491 2 28 29 0 0 chr4 40301715 40301750 -143986912 + AT_rich Low_complexity Low_complexity 1 35 0 1906 137 13 10 chr4 40302175 40302474 -143986188 + AluJb SINE Alu 1 300 -12 721 184 16 0 chr4 40303104 40303229 -143985433 + FLAM_A SINE Alu 1 127 -6 447 246 164 0 chr4 40303349 40303483 -143985179 + MIR SINE MIR 93 248 -14 841 125 0 0 chr4 40303622 40303734 -143984928 - AluSx SINE Alu -23 287 176 523 191 0 11 chr4 40303734 40303828 -143984834 - AluSx SINE Alu -218 94 2 1463 181 56 36 chr4 40303892 40304195 -143984467 + AluJo SINE Alu 1 309 -3 1819 164 0 14 chr4 40304473 40304759 -143983903 - AluJo SINE Alu -30 282 1 1783 161 0 33 chr4 40305205 40305510 -143983152 - AluJb SINE Alu -17 295 1 1196 193 14 0 chr4 40305511 40305729 -143982933 - MER58A DNA MER1_type -3 221 1 406 252 145 13 chr4 40305785 40305944 -143982718 + MIR SINE MIR 70 249 -13 21 36 0 0 chr4 40307219 40307247 -143981415 + AT_rich Low_complexity Low_complexity 1 28 0 2244 108 3 7 chr4 40307489 40307786 -143980876 - AluSx SINE Alu -16 296 1 2288 92 24 0 chr4 40307934 40308226 -143980436 - AluSx SINE Alu -13 299 1 188 234 78 0 chr4 40308304 40308368 -143980294 + MIR SINE MIR 84 152 -110 1816 163 52 0 chr4 40309043 40309331 -143979331 - AluJb SINE Alu -9 303 1 2493 85 0 0 chr4 40309752 40310058 -143978604 - AluSc SINE Alu -3 306 1 1684 155 14 41 chr4 40310604 40310894 -143977768 - AluJb SINE Alu -30 282 1 219 36 0 0 chr4 40310896 40310924 -143977738 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 2058 132 4 0 chr4 40310924 40311205 -143977457 - AluSx SINE Alu -30 282 1 729 221 19 0 chr4 40311207 40311361 -143977301 - AluJb SINE Alu -19 293 137 27 62 0 0 chr4 40311644 40311692 -143976970 + AT_rich Low_complexity Low_complexity 1 48 0 472 217 89 38 chr4 40311769 40311926 -143976736 + L1MC5 LINE L1 7258 7422 -539 2082 127 7 0 chr4 40311931 40312223 -143976439 - AluSx SINE Alu -18 294 1 1395 134 0 14 chr4 40312305 40312521 -143976141 + AluJb SINE Alu 84 296 -16 373 251 246 0 chr4 40312521 40312688 -143975974 + L1MC5 LINE L1 7706 7913 -48 2389 72 3 23 chr4 40313427 40313732 -143974930 - AluSx SINE Alu -13 299 1 950 241 60 44 chr4 40313866 40314142 -143974520 - L1ME3A LINE L1 -114 6056 5773 2160 132 0 6 chr4 40314142 40314453 -143974209 - AluSx SINE Alu -3 309 1 950 241 60 44 chr4 40314453 40314495 -143974167 - L1ME3A LINE L1 -397 5773 5733 356 172 94 0 chr4 40314498 40314562 -143974100 - L1ME3A LINE L1 -485 5685 5616 1510 160 119 11 chr4 40314570 40314839 -143973823 - AluJb SINE Alu -14 298 1 186 43 0 0 chr4 40314842 40314865 -143973797 + (A)n Simple_repeat Simple_repeat 1 23 0 727 128 9 0 chr4 40314871 40314980 -143973682 - FLAM_C SINE Alu -32 111 2 488 245 98 7 chr4 40314983 40315126 -143973536 - L1ME3A LINE L1 -563 5607 5452 2131 142 0 0 chr4 40315137 40315439 -143973223 - AluSx SINE Alu -10 302 1 738 185 0 22 chr4 40315442 40315577 -143973085 - FLAM_A SINE Alu -1 132 1 2244 96 0 3 chr4 40315775 40316057 -143972605 - AluSx SINE Alu -26 286 6 1560 180 24 3 chr4 40316279 40316573 -143972089 + AluSq SINE Alu 1 300 -13 42 36 0 0 chr4 40316879 40316935 -143971727 + AT_rich Low_complexity Low_complexity 1 56 0 21 0 0 0 chr4 40316946 40316967 -143971695 + AT_rich Low_complexity Low_complexity 1 21 0 2302 99 13 0 chr4 40317008 40317312 -143971350 + AluSx SINE Alu 1 308 -4 214 257 0 54 chr4 40318573 40318647 -143970015 - MIR3 SINE MIR -35 173 104 2231 97 10 7 chr4 40318981 40319270 -143969392 - AluSc SINE Alu -12 297 8 1794 150 17 17 chr4 40319273 40319567 -143969095 - AluSx SINE Alu -18 294 1 254 237 195 38 chr4 40319727 40319738 -143968924 - L1MC4a LINE L1 -1636 6172 6164 2243 97 7 7 chr4 40319738 40320038 -143968624 + AluSp SINE Alu 1 300 -13 254 237 195 38 chr4 40320038 40320288 -143968374 - L1MC4a LINE L1 -1644 6164 5870 216 253 177 13 chr4 40320529 40320608 -143968054 + L2 LINE L2 3222 3313 0 1870 154 3 23 chr4 40320718 40321023 -143967639 - AluSx SINE Alu -13 299 1 2374 92 7 0 chr4 40321405 40321708 -143966954 - AluSx SINE Alu -7 305 1 2618 55 0 10 chr4 40321711 40322023 -143966639 - AluY SINE Alu -2 309 1 2278 116 0 0 chr4 40374902 40375205 -143913457 + AluSx SINE Alu 1 303 -9 2038 110 3 13 chr4 40375430 40375731 -143912931 + AluY SINE Alu 1 298 -13 1213 142 0 0 chr4 40375971 40376140 -143912522 - AluSx SINE Alu -143 169 1 302 232 0 49 chr4 40376876 40376958 -143911704 + L1MEc LINE L1 49 126 -6270 1405 318 0 75 chr4 40376961 40377294 -143911368 - AluY SINE Alu -3 308 1 1035 192 10 10 chr4 40377302 40377500 -143911162 + AluJo SINE Alu 108 305 -7 250 225 92 50 chr4 40377563 40377683 -143910979 + L1MC4a LINE L1 5899 6023 -1785 421 205 115 33 chr4 40377857 40377979 -143910683 - L2 LINE L2 -8 3305 3174 384 200 42 152 chr4 40377979 40378058 -143910604 + Charlie1a DNA MER1_type 9 62 -2699 2214 116 0 0 chr4 40378058 40378359 -143910303 - AluY SINE Alu -10 301 1 384 200 42 152 chr4 40378359 40378444 -143910218 + Charlie1a DNA MER1_type 62 155 -1300 441 0 0 0 chr4 40378634 40378683 -143909979 + (A)n Simple_repeat Simple_repeat 1 49 0 1856 177 7 0 chr4 40378691 40379001 -143909661 + AluJo SINE Alu 1 312 0 2354 78 0 0 chr4 40379459 40379774 -143908888 - AluSp SINE Alu 0 315 1 311 238 0 0 chr4 40380030 40380093 -143908569 - MLT-int LTR MaLR -993 742 680 1884 184 7 0 chr4 40380374 40380679 -143907983 + AluJo SINE Alu 1 307 -5 1584 136 78 61 chr4 40380695 40380989 -143907673 + AluJo SINE Alu 1 299 -13 518 209 28 11 chr4 40381150 40381327 -143907335 + (TA)n Simple_repeat Simple_repeat 1 180 0 745 152 29 0 chr4 40381362 40381533 -143907129 + (TA)n Simple_repeat Simple_repeat 1 176 0 1025 85 0 0 chr4 40381533 40381663 -143906999 - AluSg/x SINE Alu -20 290 161 1953 150 10 0 chr4 40381834 40382140 -143906522 - AluSq SINE Alu -4 309 1 1798 152 3 40 chr4 40382141 40382444 -143906218 - AluJb SINE Alu -18 294 3 276 220 0 0 chr4 40382646 40382696 -143905966 - L2 LINE L2 -48 3265 3216 1367 136 0 5 chr4 40383248 40383439 -143905223 + AluSx SINE Alu 1 190 -122 2243 92 3 0 chr4 40383539 40383823 -143904839 - AluSg SINE Alu -25 285 1 2099 122 3 13 chr4 40383828 40384132 -143904530 - AluSx SINE Alu -11 301 1 584 171 0 0 chr4 40384163 40384251 -143904411 + FRAM SINE Alu 68 155 -21 594 346 28 15 chr4 40384266 40384590 -143904072 + L1MEc LINE L1 363 690 -6031 1965 122 0 56 chr4 40384688 40385008 -143903654 - AluSx SINE Alu -10 302 1 763 158 0 68 chr4 40385008 40385154 -143903508 - FLAM_C SINE Alu -6 137 2 4967 153 64 73 chr4 40385324 40385615 -143903047 + L1MEc LINE L1 1040 1332 -5208 1923 132 21 7 chr4 40385615 40385933 -143902729 + AluSx SINE Alu 1 312 0 4967 153 64 73 chr4 40385933 40386559 -143902103 + L1MEc LINE L1 1332 2013 -4527 531 43 0 14 chr4 40386559 40386628 -143902034 + AluSp/q SINE Alu 229 296 -17 4967 153 64 73 chr4 40386628 40386881 -143901781 + L1MEc LINE L1 2013 2267 -4273 628 189 78 5 chr4 40386900 40387103 -143901559 + L1MD2 LINE L1 6077 6347 -12 1856 140 8 0 chr4 40387103 40387368 -143901294 + AluSx SINE Alu 24 290 -22 628 189 78 5 chr4 40387368 40387380 -143901282 + L1MD2 LINE L1 6347 6357 -2 1673 95 14 5 chr4 40387393 40387614 -143901048 + AluSg SINE Alu 1 223 -87 222 118 0 0 chr4 40387724 40387758 -143900904 + (A)n Simple_repeat Simple_repeat 1 34 0 2102 111 38 0 chr4 40387948 40388236 -143900426 - AluSx SINE Alu -13 299 1 1899 124 48 96 chr4 40388440 40388794 -143899868 + MER1B DNA MER1_type 1 337 0 272 198 148 15 chr4 40388919 40389004 -143899658 - MIR SINE MIR -73 135 42 2264 136 19 11 chr4 40389436 40389796 -143898866 - MLT1A1 LTR MaLR 0 365 3 223 303 76 50 chr4 40389961 40390080 -143898582 + MIR SINE MIR 92 213 -49 869 134 0 8 chr4 40390215 40390342 -143898320 + MER30 DNA MER1_type 105 230 0 1567 177 3 112 chr4 40390343 40390415 -143898247 - L1MDa LINE L1 -6182 358 280 2049 107 42 3 chr4 40390415 40390704 -143897958 + AluJo SINE Alu 1 300 -12 1567 177 3 112 chr4 40390704 40391015 -143897647 - L1MDa LINE L1 -6260 280 17 2154 104 47 0 chr4 40391035 40391333 -143897329 - AluSq SINE Alu -1 312 1 763 268 33 0 chr4 40391333 40391516 -143897146 - MIR SINE MIR -62 200 12 270 279 93 39 chr4 40391608 40391737 -143896925 - L2 LINE L2 -14 3299 3164 1172 183 0 23 chr4 40391846 40392065 -143896597 - AluJo SINE Alu -12 300 87 287 326 28 42 chr4 40392067 40392211 -143896451 - L2 LINE L2 -240 3032 2891 2218 104 6 31 chr4 40392402 40392720 -143895942 - AluSx SINE Alu -2 310 1 191 88 29 0 chr4 40392911 40392945 -143895717 + (GAAAA)n Simple_repeat Simple_repeat 4 38 0 350 293 140 39 chr4 40392982 40393211 -143895451 + MIR SINE MIR 8 259 -3 502 286 83 46 chr4 40393364 40393605 -143895057 - MLT1L LTR MaLR -361 254 5 299 337 151 29 chr4 40393615 40393866 -143894796 + L2 LINE L2 2335 2619 -695 634 240 89 0 chr4 40393866 40394012 -143894650 - MER5A DNA MER1_type 0 189 31 288 130 0 37 chr4 40394253 40394307 -143894355 - L1MB7 LINE L1 -10 6174 6123 2762 127 51 45 chr4 40394341 40394412 -143894250 - L1MB8 LINE L1 -1 6177 6108 2231 123 0 0 chr4 40394412 40394714 -143893948 + AluSx SINE Alu 1 302 -10 2762 127 51 45 chr4 40394714 40395131 -143893531 - L1MB8 LINE L1 -70 6108 5686 1061 179 24 63 chr4 40395166 40395418 -143893244 - AluJo SINE Alu -70 242 1 245 178 0 22 chr4 40395430 40395475 -143893187 + Alu SINE Alu 124 167 -135 2118 81 0 15 chr4 40396450 40396723 -143891939 + AluSg1 SINE Alu 39 307 -2 322 115 47 64 chr4 40397193 40397547 -143891115 + (TATAA)n Simple_repeat Simple_repeat 1 347 0 49 76 0 0 chr4 40397468 40397573 -143891089 + AT_rich Low_complexity Low_complexity 1 105 0 * 292 108 40 74 chr4 40397575 40397751 -143890911 + (TATAA)n Simple_repeat Simple_repeat 5 174 0 410 179 24 0 chr4 40397754 40397922 -143890740 + (TA)n Simple_repeat Simple_repeat 1 172 0 858 151 18 48 chr4 40397922 40398088 -143890574 - FRAM SINE Alu -17 159 1 881 152 15 15 chr4 40398105 40398237 -143890425 + FLAM_C SINE Alu 2 133 0 2324 53 7 23 chr4 40398247 40398550 -143890112 + AluY SINE Alu 5 302 -9 21 36 0 0 chr4 40398687 40398715 -143889947 + AT_rich Low_complexity Low_complexity 1 28 0 345 247 59 41 chr4 40398745 40398915 -143889747 - L1MB8 LINE L1 -2380 5428 5256 207 296 0 0 chr4 40398978 40399032 -143889630 - L2 LINE L2 -5 3308 3255 2256 87 24 0 chr4 40399112 40399401 -143889261 + AluSx SINE Alu 1 296 -16 2248 97 13 3 chr4 40399402 40399712 -143888950 + AluSp SINE Alu 1 313 0 1467 207 135 34 chr4 40399737 40400182 -143888480 - MLT1F LTR MaLR -50 492 3 824 170 69 0 chr4 40400196 40400355 -143888307 - FRAM SINE Alu -10 166 1 1650 192 21 14 chr4 40400407 40400698 -143887964 + AluJo SINE Alu 7 299 -13 1560 346 0 26 chr4 40400698 40401007 -143887655 + AluY SINE Alu 1 301 -10 1699 107 3 136 chr4 40401014 40401368 -143887294 + AluJb SINE Alu 2 308 -4 31 0 0 0 chr4 40401930 40401961 -143886701 + AT_rich Low_complexity Low_complexity 1 31 0 2329 101 0 16 chr4 40402051 40402358 -143886304 + AluSg SINE Alu 1 302 -8 1472 192 23 20 chr4 40402396 40402698 -143885964 + AluJb SINE Alu 1 303 -9 2248 114 3 3 chr4 40403009 40403316 -143885346 - AluSx SINE Alu -5 307 1 1925 170 0 3 chr4 40403438 40403750 -143884912 - AluJo SINE Alu -1 311 1 2204 98 14 3 chr4 40403868 40404163 -143884499 - AluSx SINE Alu -14 298 1 324 222 0 0 chr4 40404564 40404627 -143884035 + FRAM/FAM SINE Alu 1 62 -104 186 43 0 0 chr4 40404738 40404761 -143883901 + (A)n Simple_repeat Simple_repeat 1 23 0 413 250 8 45 chr4 40404761 40404878 -143883784 + L1MC5 LINE L1 7769 7882 -79 2226 108 3 3 chr4 40404878 40405174 -143883488 - AluSq SINE Alu -17 296 1 413 250 8 45 chr4 40405174 40405188 -143883474 + L1MC5 LINE L1 7882 7895 -66 960 118 0 15 chr4 40405652 40405787 -143882875 - FLAM_C SINE Alu 0 133 1 671 145 17 8 chr4 40405790 40405907 -143882755 + L1MD3 LINE L1 7878 7995 0 1895 123 31 14 chr4 40405950 40406242 -143882420 + L1MC1 LINE L1 6020 6316 -17 272 264 151 0 chr4 40406285 40406391 -143882271 + L1MC5 LINE L1 7810 7931 -30 2105 131 3 0 chr4 40406681 40406987 -143881675 - AluSx SINE Alu -5 307 1 258 105 0 0 chr4 40407194 40407232 -143881430 + (A)n Simple_repeat Simple_repeat 1 38 0 680 163 32 16 chr4 40407995 40408118 -143880544 - FLAM_C SINE Alu -6 127 3 461 83 17 0 chr4 40408498 40408558 -143880104 + U7 snRNA snRNA 2 62 -1 777 263 145 34 chr4 40408911 40409168 -143879494 + L1ME4a LINE L1 5525 5752 -369 1694 167 43 7 chr4 40409168 40409467 -143879195 - AluJb SINE Alu -2 310 1 777 263 145 34 chr4 40409467 40409559 -143879103 + L1ME4a LINE L1 5752 5832 -289 2536 62 3 0 chr4 40409559 40409867 -143878795 - AluY SINE Alu -2 309 1 777 263 145 34 chr4 40409867 40409878 -143878784 + L1ME4a LINE L1 5832 5840 -281 2249 111 3 0 chr4 40409878 40410185 -143878477 - AluSx SINE Alu -4 308 1 777 263 145 34 chr4 40410185 40410359 -143878303 + L1ME4a LINE L1 5840 6121 0 629 244 202 50 chr4 40410399 40410776 -143877886 + L1MC5 LINE L1 7452 7885 -76 2188 118 0 7 chr4 40411063 40411367 -143877295 + AluSx SINE Alu 1 302 -10 191 250 56 14 chr4 40411797 40411869 -143876793 - MIR SINE MIR -122 140 66 2263 99 27 0 chr4 40412027 40412320 -143876342 + AluSx SINE Alu 1 301 -11 2165 124 0 40 chr4 40412410 40412733 -143875929 + AluSg SINE Alu 1 310 0 2184 89 17 14 chr4 40412880 40413172 -143875490 + AluSp SINE Alu 6 298 -15 2309 97 0 0 chr4 40413263 40413563 -143875099 + AluSx SINE Alu 1 300 -12 1153 193 36 5 chr4 40413730 40414023 -143874639 + MER2 DNA MER2_type 1 345 0 2037 114 7 33 chr4 40414310 40414609 -143874053 - AluSx SINE Alu -21 291 1 1552 180 14 17 chr4 40414665 40414959 -143873703 + AluJo SINE Alu 11 303 -9 231 36 0 0 chr4 40414960 40414988 -143873674 + (TAGA)n Simple_repeat Simple_repeat 4 31 0 764 164 8 0 chr4 40415011 40415133 -143873529 - FLAM_C SINE Alu -7 136 14 6367 37 0 0 chr4 40415414 40416172 -143872490 + L1P LINE L1 3257 4014 -2132 3104 191 36 19 chr4 40416307 40416952 -143871710 - MLT1A2-int LTR MaLR -710 661 6 1616 214 55 28 chr4 40416957 40417321 -143871341 - MLT1A2 LTR MaLR 0 374 1 2477 62 3 3 chr4 40417404 40417709 -143870953 + AluY SINE Alu 1 305 -6 235 221 156 0 chr4 40417728 40417805 -143870857 + MLT1G3 LTR MaLR 11 99 -496 629 241 130 6 chr4 40417805 40417967 -143870695 + FRAM SINE Alu 1 176 0 925 273 106 16 chr4 40417986 40418430 -143870232 + MLT1G3 LTR MaLR 25 595 0 862 139 0 29 chr4 40418447 40418584 -143870078 + FLAM_C SINE Alu 1 133 0 40 37 0 0 chr4 40418991 40419045 -143869617 + AT_rich Low_complexity Low_complexity 1 54 0 2094 146 0 0 chr4 40419279 40419574 -143869088 - AluSx SINE Alu -17 295 1 1351 87 12 6 chr4 40419948 40420120 -143868542 + AluSg SINE Alu 1 173 -137 1230 167 83 26 chr4 40420331 40420559 -143868103 - AluJb SINE Alu -67 245 5 298 235 0 12 chr4 40420580 40420661 -143868001 - L1ME LINE L1 -345 5776 5697 2373 96 0 0 chr4 40420747 40421040 -143867622 - AluSx SINE Alu -19 293 1 32 0 0 0 chr4 40421137 40421169 -143867493 + AT_rich Low_complexity Low_complexity 1 32 0 1560 161 64 4 chr4 40421209 40421224 -143867438 - AluJb SINE Alu -15 297 284 468 0 0 0 chr4 40421224 40421276 -143867386 + (TG)n Simple_repeat Simple_repeat 1 52 0 1560 161 64 4 chr4 40421276 40421540 -143867122 - AluJb SINE Alu -28 284 1 2339 75 31 0 chr4 40421551 40421843 -143866819 - AluSc SINE Alu -8 301 1 27 49 0 0 chr4 40421921 40421962 -143866700 + AT_rich Low_complexity Low_complexity 1 41 0 2535 60 0 3 chr4 40422374 40422675 -143865987 - AluY SINE Alu -11 300 1 2131 112 25 0 chr4 40422705 40422991 -143865671 - AluSx SINE Alu -15 297 5 2259 101 6 22 chr4 40423154 40423472 -143865190 - AluSq SINE Alu 0 313 1 1455 177 30 39 chr4 40423627 40423932 -143864730 - AluJo SINE Alu -9 303 2 1785 194 7 0 chr4 40424251 40424550 -143864112 - AluJo SINE Alu -11 301 1 22 35 0 0 chr4 40424563 40424592 -143864070 + AT_rich Low_complexity Low_complexity 1 29 0 594 217 72 14 chr4 40424608 40424746 -143863916 + LTR8 LTR ERV1 1 146 -545 1737 223 35 50 chr4 40425139 40425707 -143862955 + MER57-int LTR ERV1 2120 2779 -3552 829 181 0 8 chr4 40425710 40425837 -143862825 + FLAM_C SINE Alu 2 127 -16 897 214 5 16 chr4 40425853 40426045 -143862617 + MER57-int LTR ERV1 2768 2957 -3374 643 173 50 148 chr4 40425947 40426224 -143862438 + LTR57-int LTR ERVL 792 1041 -4302 * 871 148 54 0 chr4 40426083 40426232 -143862430 + MER57-int LTR ERV1 2951 3107 -3224 678 152 0 0 chr4 40426255 40426360 -143862302 - FLAM_C SINE Alu -3 140 36 779 173 12 30 chr4 40426361 40426529 -143862133 + MER57-int LTR ERV1 3093 3257 -3074 278 234 26 0 chr4 40426510 40426587 -143862075 + MER57-int LTR ERV1 3480 3558 -2705 * 2277 115 0 10 chr4 40426602 40426914 -143861748 - AluSx SINE Alu -3 309 1 249 208 0 0 chr4 40427063 40427116 -143861546 + L1MC5 LINE L1 7609 7661 -300 1143 149 0 0 chr4 40427147 40427315 -143861347 - AluSg/x SINE Alu -11 301 134 1999 117 19 29 chr4 40427316 40427661 -143861001 - AluSx SINE Alu 0 312 1 322 241 0 25 chr4 40427663 40427742 -143860920 + MER57-int LTR ERV1 6921 6997 -540 1030 147 31 127 chr4 40427771 40427950 -143860712 + LTR54 LTR ERV1 107 302 -208 2483 71 3 0 chr4 40427950 40428258 -143860404 - AluY SINE Alu -2 309 1 1030 147 31 127 chr4 40428258 40428420 -143860242 + LTR54 LTR ERV1 302 478 -32 1352 196 0 61 chr4 40428420 40428746 -143859916 - AluJo SINE Alu -6 306 1 1030 147 31 127 chr4 40428746 40428802 -143859860 + LTR54 LTR ERV1 478 538 28 1782 163 0 17 chr4 40428802 40429096 -143859566 - AluJb SINE Alu -23 289 1 1830 180 0 0 chr4 40429096 40429391 -143859271 - AluJb SINE Alu -17 295 1 1030 147 31 127 chr4 40429391 40429458 -143859204 + LTR54 LTR ERV1 437 509 -1 2153 113 7 10 chr4 40430268 40430570 -143858092 - AluSx SINE Alu -11 301 1 1271 122 0 11 chr4 40430594 40430774 -143857888 - AluSp SINE Alu -12 301 124 2220 91 0 33 chr4 40430884 40431191 -143857471 - AluSx SINE Alu -15 297 1 865 173 0 0 chr4 40431246 40431379 -143857283 - FLAM_C SINE Alu 0 133 1 2461 77 0 6 chr4 40431380 40431691 -143856971 - AluY SINE Alu -2 309 1 1733 176 11 3 chr4 40431697 40431981 -143856681 - AluJb SINE Alu -17 295 10 1818 146 3 43 chr4 40432168 40432469 -143856193 - AluJo SINE Alu -23 289 1 2019 95 0 0 chr4 40432500 40432786 -143855876 - AluY SINE Alu 0 305 20 325 149 16 174 chr4 40432849 40432895 -143855767 - LTR37B LTR ERV1 -168 300 283 2589 42 7 0 chr4 40432895 40433201 -143855461 - AluY SINE Alu -3 308 1 325 149 16 174 chr4 40433201 40433275 -143855387 - LTR37B LTR ERV1 -185 283 199 1228 167 146 68 chr4 40433441 40433824 -143854838 + L1M4 LINE L1 4671 5083 -1063 2605 101 58 5 chr4 40433829 40434206 -143854456 - L1PA13 LINE L1 -1 6162 5766 416 188 0 0 chr4 40434216 40434296 -143854366 - AluJb SINE Alu -5 307 228 1041 139 0 0 chr4 40434308 40434452 -143854210 - AluJb SINE Alu -167 145 2 189 0 0 0 chr4 40434452 40434473 -143854189 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 951 184 0 0 chr4 40434476 40434628 -143854034 - AluJb SINE Alu -32 280 129 764 153 0 0 chr4 40434780 40434891 -143853771 - AluSq/x SINE Alu -201 111 1 1563 178 135 131 chr4 40434891 40434993 -143853669 + MLT2B1 LTR ERVL 5 105 -415 1570 173 25 11 chr4 40434993 40435271 -143853391 + AluJo SINE Alu 1 282 -30 269 26 26 0 chr4 40435276 40435314 -143853348 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2136 103 3 0 chr4 40435318 40435600 -143853062 + AluSg SINE Alu 1 283 -27 1563 178 135 131 chr4 40435600 40435998 -143852664 + MLT2B1 LTR ERVL 110 518 -2 2226 104 0 7 chr4 40436482 40436780 -143851882 - AluSx SINE Alu -16 296 1 1742 178 14 3 chr4 40436843 40437136 -143851526 - AluJo SINE Alu -16 296 1 2049 88 4 11 chr4 40437329 40437601 -143851061 + AluSq SINE Alu 13 282 -31 236 71 48 0 chr4 40437605 40437647 -143851015 + A-rich Low_complexity Low_complexity 2 45 0 2371 80 0 7 chr4 40437920 40438220 -143850442 + AluY SINE Alu 1 298 -13 2445 71 0 0 chr4 40438545 40438840 -143849822 + AluY SINE Alu 1 295 -16 186 133 0 0 chr4 40439032 40439062 -143849600 + (TCTCCC)n Simple_repeat Simple_repeat 3 32 0 955 70 0 0 chr4 40439349 40439464 -143849198 + AluSq/x SINE Alu 1 115 -197 1754 110 4 49 chr4 40439465 40439728 -143848934 + MER1B DNA MER1_type 129 339 0 187 267 0 0 chr4 40439758 40439803 -143848859 + L2 LINE L2 3203 3247 -25 2021 123 31 3 chr4 40439807 40440100 -143848562 + AluSx SINE Alu 1 301 -11 2296 97 3 10 chr4 40440100 40440400 -143848262 + AluSx SINE Alu 1 298 -14 701 192 0 31 chr4 40441432 40441562 -143847100 - FLAM_C SINE Alu -4 139 14 408 390 14 0 chr4 40441767 40441980 -143846682 + L1MEc LINE L1 150 365 -6031 2100 106 0 50 chr4 40442078 40442398 -143846264 - AluSx SINE Alu -8 304 1 806 145 0 55 chr4 40442398 40442543 -143846119 - FLAM_C SINE Alu -6 137 1 649 300 32 20 chr4 40442544 40442791 -143845871 + L1M4 LINE L1 3918 4167 -1979 564 204 0 29 chr4 40442797 40442900 -143845762 - MLT2B1 LTR ERVL -206 309 210 207 0 0 0 chr4 40442907 40442930 -143845732 + (TG)n Simple_repeat Simple_repeat 1 23 0 2149 118 0 0 chr4 40442947 40443227 -143845435 - AluSx SINE Alu -32 280 1 1382 133 9 5 chr4 40443228 40443438 -143845224 - MLT2B1 LTR ERVL -309 211 1 243 400 94 0 chr4 40443458 40443693 -143844969 + L2 LINE L2 2488 2744 -570 218 319 48 122 chr4 40443798 40444068 -143844594 + L2 LINE L2 2932 3181 -91 240 111 0 0 chr4 40444795 40444831 -143843831 + (T)n Simple_repeat Simple_repeat 1 36 0 407 342 141 8 chr4 40445173 40445407 -143843255 + L3 LINE CR1 129 393 -1184 208 274 68 41 chr4 40445436 40445509 -143843153 + MIR SINE MIR 23 97 -165 1457 151 5 0 chr4 40445732 40445951 -143842711 + AluJo SINE Alu 1 220 -92 1088 191 0 5 chr4 40445951 40446002 -143842660 + AluJb SINE Alu 86 136 -176 2177 128 0 0 chr4 40446002 40446300 -143842362 + AluSq SINE Alu 1 298 -15 1088 191 0 5 chr4 40446300 40446437 -143842225 + AluJb SINE Alu 136 273 -39 188 86 29 0 chr4 40446511 40446546 -143842116 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 826 194 0 89 chr4 40446775 40446896 -143841766 + AluJo SINE Alu 2 132 -180 237 98 0 0 chr4 40446896 40446937 -143841725 + (TA)n Simple_repeat Simple_repeat 2 42 0 2023 138 3 0 chr4 40446941 40447232 -143841430 - AluSx SINE Alu -20 292 1 826 194 0 89 chr4 40447232 40447285 -143841377 + AluJo SINE Alu 135 165 -147 1529 166 0 0 chr4 40447386 40447621 -143841041 + AluJb SINE Alu 62 296 -16 2446 81 0 0 chr4 40447622 40447917 -143840745 + AluSc SINE Alu 1 295 -14 633 281 6 11 chr4 40447917 40448095 -143840567 + L1MEc LINE L1 137 313 -6083 * 696 214 29 5 chr4 40448082 40448288 -143840374 + L1MEc LINE L1 961 1171 -5225 699 184 0 0 chr4 40448299 40448413 -143840249 + FLAM_A SINE Alu 21 134 -8 313 136 0 0 chr4 40448424 40448468 -143840194 + L1MEc LINE L1 1200 1243 -5153 365 203 13 0 chr4 40448472 40448551 -143840111 + L1MA10 LINE L1 6240 6319 -15 905 163 0 15 chr4 40448731 40448866 -143839796 + FLAM_C SINE Alu 1 133 0 204 304 0 0 chr4 40448886 40448932 -143839730 - L2 LINE L2 -90 3182 3137 1827 190 64 93 chr4 40448982 40449453 -143839209 + L1MD3 LINE L1 5175 5272 -908 542 99 0 0 chr4 40449453 40449524 -143839138 + AluJ/FLAM SINE Alu 5 75 -237 1827 190 64 93 chr4 40449524 40449918 -143838744 + L1MD3 LINE L1 5272 5676 -504 * 2353 177 57 16 chr4 40449566 40450074 -143838588 + L1MB4 LINE L1 5651 6179 -1 936 139 53 91 chr4 40450083 40450227 -143838435 + L1MB8 LINE L1 5973 6108 -70 2134 119 0 13 chr4 40450227 40450538 -143838124 - AluY SINE Alu -4 307 1 936 139 53 91 chr4 40450538 40450602 -143838060 + L1MB8 LINE L1 6108 6173 -5 311 304 54 80 chr4 40450637 40451117 -143837545 - L2 LINE L2 -203 3069 2590 1812 156 14 0 chr4 40451263 40451545 -143837117 - AluJb SINE Alu -26 286 1 1245 155 14 46 chr4 40451756 40451975 -143836687 + AluJo SINE Alu 87 298 -14 26 0 0 0 chr4 40452101 40452127 -143836535 + AT_rich Low_complexity Low_complexity 1 26 0 2261 111 0 0 chr4 40452486 40452784 -143835878 + AluSx SINE Alu 1 298 -14 968 139 76 0 chr4 40452785 40452929 -143835733 + AluSg/x SINE Alu 132 286 -26 241 287 89 25 chr4 40453016 40453173 -143835489 + L1MC/D LINE L1 5713 5879 -1929 1001 163 12 0 chr4 40453510 40453670 -143834992 - AluSp SINE Alu -4 309 148 1760 175 3 16 chr4 40453859 40454162 -143834500 - AluJb SINE Alu -13 299 1 1674 121 32 12 chr4 40455170 40455418 -143833244 + AluSx SINE Alu 1 253 -59 11787 24 0 0 chr4 40455518 40457629 -143831033 + L1PA3 LINE L1 4040 6152 -3 1892 147 3 23 chr4 40457673 40457979 -143830683 - AluSx SINE Alu -12 300 1 231 227 164 27 chr4 40458030 40458140 -143830522 - L1MC4a LINE L1 -1634 6174 6050 2490 73 3 0 chr4 40458158 40458459 -143830203 - AluSp SINE Alu -11 302 1 198 204 74 0 chr4 40458602 40458656 -143830006 + MIR SINE MIR 116 173 -89 1658 186 0 0 chr4 40458876 40459140 -143829522 - AluJb SINE Alu -48 264 1 189 0 0 0 chr4 40459150 40459171 -143829491 + (T)n Simple_repeat Simple_repeat 1 21 0 1019 251 126 19 chr4 40459267 40459503 -143829159 + MER20B DNA MER1_type 170 380 -403 1746 86 0 0 chr4 40459503 40459723 -143828939 - AluSx SINE Alu -7 305 86 1019 251 126 19 chr4 40459723 40459900 -143828762 + MER20B DNA MER1_type 380 627 -156 2277 233 146 50 chr4 40460353 40461296 -143827366 - HAL1 LINE L1 -15 2492 1459 1299 237 152 45 chr4 40461298 40461706 -143826956 - L2 LINE L2 -411 2903 2413 2494 81 0 3 chr4 40461706 40462015 -143826647 + AluSc SINE Alu 1 308 -1 1299 237 152 45 chr4 40462015 40462185 -143826477 - L2 LINE L2 -901 2413 2263 576 145 0 0 chr4 40462318 40462401 -143826261 - AluSx SINE Alu -229 84 2 2486 83 0 0 chr4 40462471 40462784 -143825878 + AluSq SINE Alu 1 313 0 1158 94 0 0 chr4 40462786 40462962 -143825700 + AluSg/x SINE Alu 135 310 0 27 29 0 0 chr4 40462987 40463021 -143825641 + AT_rich Low_complexity Low_complexity 1 34 0 309 77 0 0 chr4 40463022 40463061 -143825601 + LTR23 LTR ERV1 320 358 -79 22 35 0 0 chr4 40463066 40463095 -143825567 + AT_rich Low_complexity Low_complexity 1 29 0 1935 157 3 7 chr4 40463732 40464032 -143824630 + AluJo SINE Alu 5 303 -9 1799 152 11 0 chr4 40464041 40464324 -143824338 + AluJb SINE Alu 11 296 -16 2288 103 3 0 chr4 40464375 40464676 -143823986 + AluSx SINE Alu 1 302 -10 1017 105 13 7 chr4 40464995 40465147 -143823515 + BC200 scRNA scRNA 6 158 -42 1988 116 7 7 chr4 40465205 40465497 -143823165 - AluSx SINE Alu -20 292 1 212 281 0 47 chr4 40465821 40465885 -143822777 - MIR3 SINE MIR -41 167 107 910 94 8 16 chr4 40466217 40466345 -143822317 - AluJb SINE Alu -185 127 1 2515 51 3 10 chr4 40466358 40466670 -143821992 - AluY SINE Alu -1 310 1 1726 99 4 4 chr4 40466716 40466971 -143821691 - AluSx SINE Alu 0 305 51 264 250 40 0 chr4 40466997 40467073 -143821589 - L2 LINE L2 0 3313 3235 391 151 32 43 chr4 40467178 40467271 -143821391 + MER5A DNA MER1_type 1 92 -97 279 0 0 0 chr4 40467290 40467321 -143821341 + (TG)n Simple_repeat Simple_repeat 1 31 0 252 0 0 0 chr4 40467320 40467348 -143821314 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 224 258 0 15 chr4 40468086 40468152 -143820510 + (CGG)n Simple_repeat Simple_repeat 2 66 0 201 23 47 47 chr4 40470213 40470256 -143818406 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 24 0 0 0 chr4 40470989 40471013 -143817649 + AT_rich Low_complexity Low_complexity 1 24 0 223 325 181 0 chr4 40471329 40471412 -143817250 - MIR SINE MIR -118 144 47 2242 121 0 13 chr4 40471595 40471910 -143816752 - AluSx SINE Alu -1 311 1 2144 135 3 0 chr4 40472056 40472403 -143816259 - AluSp SINE Alu 0 348 1 740 134 30 144 chr4 40472629 40472830 -143815832 - MER20B DNA MER1_type -2 217 40 1487 105 14 5 chr4 40472851 40473060 -143815602 - AluSg/x SINE Alu -20 290 80 1463 189 38 7 chr4 40473087 40473378 -143815284 + AluJo SINE Alu 1 300 -12 2481 67 3 0 chr4 40473416 40473716 -143814946 + AluSc SINE Alu 1 301 -8 938 161 6 6 chr4 40473958 40474119 -143814543 + AluJb SINE Alu 136 296 -16 25 31 0 0 chr4 40474123 40474155 -143814507 + AT_rich Low_complexity Low_complexity 1 32 0 1977 146 7 7 chr4 40474390 40474691 -143813971 - AluJb SINE Alu -11 301 1 2061 86 6 86 chr4 40474719 40475043 -143813619 - AluSg SINE Alu -10 300 3 2244 115 0 3 chr4 40475044 40475348 -143813314 - AluSx SINE Alu -9 303 1 954 134 34 50 chr4 40475527 40475706 -143812956 - AluSg/x SINE Alu -3 309 134 1780 120 23 78 chr4 40475706 40475868 -143812794 - AluSx SINE Alu -19 293 154 2357 77 0 17 chr4 40475868 40476165 -143812497 - AluY SINE Alu -19 292 1 1780 120 23 78 chr4 40476165 40476311 -143812351 - AluSx SINE Alu -158 154 2 1396 157 149 4 chr4 40476321 40476582 -143812080 - AluSg SINE Alu -1 299 1 1964 132 13 10 chr4 40476753 40477057 -143811605 - AluSx SINE Alu -5 307 3 1834 152 45 0 chr4 40477059 40477349 -143811313 - AluSx SINE Alu -9 303 1 1921 135 50 0 chr4 40477387 40477669 -143810993 - AluJo SINE Alu -16 296 1 2186 91 10 14 chr4 40477753 40478049 -143810613 - AluSp SINE Alu -18 295 1 303 247 227 27 chr4 40478289 40478439 -143810223 - L1ME3A LINE L1 -94 6076 5897 318 264 194 14 chr4 40478512 40478656 -143810006 - MIR3 SINE MIR -7 201 32 207 271 189 41 chr4 40478860 40478982 -143809680 + MIR SINE MIR 7 146 -116 1649 138 173 0 chr4 40479246 40479529 -143809133 + MER44D DNA MER2_type 2 603 -6 25 0 0 0 chr4 40479911 40479936 -143808726 + AT_rich Low_complexity Low_complexity 1 25 0 599 94 35 0 chr4 40479936 40480021 -143808641 - HY3 scRNA scRNA -1 100 13 225 0 0 0 chr4 40480107 40480132 -143808530 + (ATTG)n Simple_repeat Simple_repeat 2 26 0 1521 128 67 67 chr4 40480136 40480418 -143808244 - AluJo SINE Alu -30 282 1 223 341 96 22 chr4 40480441 40480576 -143808086 - MIR SINE MIR -88 174 30 25 75 0 0 chr4 40480912 40480965 -143807697 + AT_rich Low_complexity Low_complexity 1 53 0 2574 62 0 0 chr4 40481005 40481310 -143807352 - AluY SINE Alu -5 306 2 1999 126 30 0 chr4 40481482 40481783 -143806879 - AluSg SINE Alu 0 309 1 293 247 105 53 chr4 40481802 40481925 -143806737 - L1ME LINE L1 -689 5473 5341 2148 109 7 10 chr4 40481925 40482227 -143806435 - AluSx SINE Alu -11 301 1 293 247 105 53 chr4 40482227 40482256 -143806406 - L1ME LINE L1 -821 5341 5315 288 130 0 2 chr4 40482266 40482312 -143806350 + AluSp/q SINE Alu 254 294 -9 231 143 20 0 chr4 40482350 40482399 -143806263 - Alu SINE Alu -4 295 246 707 158 26 0 chr4 40482406 40482520 -143806142 - AluSq/x SINE Alu -194 118 2 1140 147 78 4 chr4 40482613 40482845 -143805817 - L1MB3 LINE L1 0 6183 5935 1498 147 33 90 chr4 40482955 40483255 -143805407 - AluJb SINE Alu -20 292 10 303 67 93 0 chr4 40483510 40483563 -143805099 - L1MB3 LINE L1 -273 5910 5859 306 0 0 0 chr4 40483581 40483615 -143805047 + (TA)n Simple_repeat Simple_repeat 2 35 0 2136 108 3 17 chr4 40483615 40483912 -143804750 - AluSc SINE Alu -16 293 1 1443 156 3 81 chr4 40483923 40484089 -143804573 - AluJo SINE Alu -25 287 154 2573 40 3 13 chr4 40484089 40484391 -143804271 - AluY SINE Alu -12 299 1 1443 156 3 81 chr4 40484391 40484532 -143804130 - AluJo SINE Alu -158 154 4 988 104 0 15 chr4 40484538 40484673 -143803989 - AluSq/x SINE Alu -179 133 1 24 0 0 0 chr4 40484905 40484929 -143803733 + AT_rich Low_complexity Low_complexity 1 24 0 1575 184 0 36 chr4 40485308 40485612 -143803050 - AluJb SINE Alu -19 293 1 1330 206 34 17 chr4 40485650 40485779 -143802883 + AluJo SINE Alu 9 134 -178 2159 129 3 3 chr4 40485779 40486082 -143802580 + AluSx SINE Alu 1 303 -9 1330 206 34 17 chr4 40486082 40486243 -143802419 + AluJo SINE Alu 134 304 -8 2237 122 10 0 chr4 40486288 40486592 -143802070 - AluSg SINE Alu -3 307 1 4884 96 104 114 chr4 40486730 40488133 -143800529 - pTR5 LTR ERV1 0 2438 740 1679 193 7 10 chr4 40489812 40490108 -143798554 - AluJo SINE Alu -17 295 1 271 295 70 26 chr4 40490154 40490310 -143798352 - MLT1J LTR MaLR -335 176 14 187 336 43 17 chr4 40490314 40490430 -143798232 - L2 LINE L2 -644 2670 2552 1906 133 0 11 chr4 40490449 40490720 -143797942 - AluJo SINE Alu -44 268 1 1394 178 34 41 chr4 40490870 40491163 -143797499 + AluJb SINE Alu 1 291 -21 547 227 44 46 chr4 40491341 40491559 -143797103 - L1MC5 LINE L1 -547 7495 7261 1112 209 80 8 chr4 40491607 40491846 -143796816 - MER6 DNA MER2_type -609 256 1 1886 107 40 0 chr4 40491848 40492101 -143796561 - AluSx SINE Alu -1 311 49 1666 172 17 14 chr4 40492103 40492394 -143796268 - AluJb SINE Alu -8 304 13 2314 107 0 0 chr4 40492421 40492731 -143795931 - AluY SINE Alu -1 310 1 2068 135 0 0 chr4 40492887 40493176 -143795486 - AluSq SINE Alu -24 289 1 1690 151 58 14 chr4 40493177 40493468 -143795194 - AluJo SINE Alu -8 304 1 263 122 0 0 chr4 40493468 40493509 -143795153 - L1MCa LINE L1 -5571 993 953 1865 139 0 60 chr4 40493622 40493938 -143794724 + AluJb SINE Alu 1 297 -15 1387 215 42 67 chr4 40493939 40494252 -143794410 - L1MCa LINE L1 -5108 937 680 1681 167 33 23 chr4 40494252 40494557 -143794105 + AluJb SINE Alu 1 308 -4 1387 215 42 67 chr4 40494557 40494881 -143793781 - L1MCa LINE L1 -5365 680 349 1365 179 0 0 chr4 40494881 40495093 -143793569 - AluJo SINE Alu -100 212 1 925 192 73 26 chr4 40495102 40495336 -143793326 - MLT1C LTR MaLR -24 443 199 828 111 0 0 chr4 40495339 40495447 -143793215 - AluSq/x SINE Alu -205 108 1 916 128 0 8 chr4 40495534 40495667 -143792995 - FLAM_C SINE Alu -6 137 6 2053 137 7 3 chr4 40495750 40496049 -143792613 - AluSx SINE Alu -12 300 1 419 144 39 19 chr4 40496371 40496475 -143792187 + HsTC2 DNA Tc2 1557 1662 -236 861 213 35 35 chr4 40496530 40496732 -143791930 - AluJb SINE Alu -29 283 82 2029 96 0 31 chr4 40496855 40497148 -143791514 - AluY SINE Alu -27 284 1 1051 90 0 0 chr4 40497148 40497282 -143791380 - AluSg1 SINE Alu -175 134 1 257 180 0 0 chr4 40497283 40497333 -143791329 + L1ME LINE L1 5631 5680 -486 1799 158 11 3 chr4 40497449 40497733 -143790929 + AluJo SINE Alu 2 287 -25 910 144 11 86 chr4 40497743 40497930 -143790732 + AluJb SINE Alu 129 301 -11 692 77 0 0 chr4 40498141 40498232 -143790430 + AluSg SINE Alu 2 92 -218 1078 88 40 0 chr4 40498232 40498380 -143790282 + AluY SINE Alu 126 279 -32 623 186 0 0 chr4 40498493 40498595 -143790067 - AluJb SINE Alu -209 103 2 1859 133 14 21 chr4 40498758 40499044 -143789618 + AluJb SINE Alu 15 298 -14 1858 151 17 3 chr4 40499044 40499336 -143789326 + AluSg SINE Alu 1 296 -14 330 278 32 8 chr4 40499494 40499620 -143789042 - AluY SINE Alu -10 291 163 1002 157 5 56 chr4 40499720 40499936 -143788726 + AluSc SINE Alu 99 303 -6 811 117 0 0 chr4 40499940 40500051 -143788611 - FLAM_C SINE Alu -32 111 1 2062 103 57 7 chr4 40500285 40500566 -143788096 - AluSx SINE Alu -17 295 1 382 146 15 7 chr4 40500928 40501127 -143787535 + AluJo SINE Alu 38 276 -26 370 234 16 0 chr4 40501129 40501253 -143787409 + (TG)n Simple_repeat Simple_repeat 1 126 0 2253 79 7 0 chr4 40501457 40501771 -143786891 + AluY SINE Alu 1 316 0 1217 132 6 0 chr4 40501784 40501958 -143786704 + AluSq SINE Alu 1 175 -138 250 289 0 0 chr4 40501960 40502036 -143786626 + L1MB7 LINE L1 6084 6159 -25 2197 130 0 0 chr4 40502136 40502436 -143786226 - AluSx SINE Alu -12 300 1 2323 104 0 0 chr4 40502926 40503224 -143785438 + AluSg SINE Alu 1 298 -12 933 165 10 72 chr4 40503345 40503459 -143785203 - AluJo SINE Alu -66 246 147 414 0 0 0 chr4 40503459 40503505 -143785157 + (TA)n Simple_repeat Simple_repeat 1 46 0 933 165 10 72 chr4 40503505 40503584 -143785078 - AluJo SINE Alu -165 147 65 1623 121 89 39 chr4 40503831 40504112 -143784550 + AluSg SINE Alu 1 295 -15 664 196 108 39 chr4 40504127 40504331 -143784331 + MIR SINE MIR 34 251 -11 1250 117 27 0 chr4 40504651 40504865 -143783797 - AluSp SINE Alu 0 347 126 2727 42 0 3 chr4 40504865 40505177 -143783485 - AluY SINE Alu 0 311 1 2059 143 10 0 chr4 40505434 40505735 -143782927 - AluSq SINE Alu -9 304 1 1885 138 3 18 chr4 40505749 40506031 -143782631 - AluSx SINE Alu -21 291 14 21 57 0 0 chr4 40506625 40506660 -143782002 + AT_rich Low_complexity Low_complexity 1 35 0 2300 97 0 0 chr4 40507217 40507506 -143781156 - AluSg SINE Alu -19 291 3 2543 60 3 3 chr4 40507616 40507917 -143780745 - AluY SINE Alu -10 301 1 1313 201 25 36 chr4 40507936 40508215 -143780447 + AluJb SINE Alu 17 292 -20 256 353 0 0 chr4 40508277 40508362 -143780300 - L2 LINE L2 0 3272 3188 211 294 110 22 chr4 40508982 40509118 -143779544 - L2 LINE L2 -926 2388 2241 1974 141 10 7 chr4 40509135 40509432 -143779230 + AluSx SINE Alu 1 298 -14 2280 65 0 88 chr4 40509439 40509778 -143778884 + AluY SINE Alu 1 309 -2 192 200 0 0 chr4 40509801 40509841 -143778821 + GA-rich Low_complexity Low_complexity 1 40 0 473 291 7 33 chr4 40509940 40510091 -143778571 - AluJo SINE Alu -41 271 125 2187 117 0 13 chr4 40510248 40510557 -143778105 - AluSg SINE Alu -5 305 1 308 147 167 20 chr4 40510589 40510691 -143777971 - HsTC2 DNA Tc2 -51 1847 1731 315 184 0 17 chr4 40510694 40510765 -143777897 + AluS SINE Alu 1 57 -246 911 107 15 0 chr4 40510956 40511087 -143777575 + BC200 scRNA scRNA 2 134 -66 1495 207 0 14 chr4 40511187 40511482 -143777180 - AluJo SINE Alu -21 291 1 275 235 108 0 chr4 40511521 40511623 -143777039 - L1MDa LINE L1 -3272 3268 3156 466 188 0 0 chr4 40511628 40511708 -143776954 - FRAM SINE Alu -50 126 47 2336 94 3 19 chr4 40511770 40512079 -143776583 + AluSx SINE Alu 1 304 -8 468 241 96 54 chr4 40512079 40512266 -143776396 - L1MDa LINE L1 -3461 3079 2876 2240 98 7 3 chr4 40512266 40512563 -143776099 - AluSp SINE Alu -15 298 1 468 241 96 54 chr4 40512563 40512636 -143776026 - L1MDa LINE L1 -3664 2876 2808 1531 159 0 23 chr4 40512638 40512813 -143775849 - AluJb SINE Alu -10 302 133 2174 101 10 7 chr4 40512813 40513111 -143775551 - AluSx SINE Alu -13 299 1 1531 159 0 23 chr4 40513111 40513199 -143775463 - AluJb SINE Alu -179 133 45 2227 125 0 0 chr4 40513211 40513515 -143775147 - AluSx SINE Alu -8 304 1 324 167 61 0 chr4 40513516 40513582 -143775080 - L1MDa LINE L1 -3927 2613 2544 2010 143 6 13 chr4 40513600 40513914 -143774748 - AluSx SINE Alu 0 312 1 2089 127 3 3 chr4 40513930 40514244 -143774418 - AluSq SINE Alu 0 314 1 344 286 261 14 chr4 40514453 40514642 -143774020 + L2 LINE L2 1299 1440 -1874 2216 110 0 13 chr4 40514642 40514942 -143773720 - AluSg SINE Alu -14 296 1 344 286 261 14 chr4 40514942 40515105 -143773557 + L2 LINE L2 1440 1738 -1576 211 291 0 0 chr4 40515106 40515161 -143773501 - MIR SINE MIR -198 64 10 1387 75 0 0 chr4 40515184 40515358 -143773304 - AluY SINE Alu -9 302 129 2250 95 3 3 chr4 40515463 40515758 -143772904 + AluY SINE Alu 1 295 -16 1327 172 82 53 chr4 40515920 40516223 -143772439 + AluJb SINE Alu 1 312 0 1144 206 81 0 chr4 40516351 40516574 -143772088 - AluJb SINE Alu -71 241 1 1647 183 67 0 chr4 40516616 40516901 -143771761 + AluJb SINE Alu 1 304 -8 1779 183 40 108 chr4 40516919 40517098 -143771564 + MSTA LTR MaLR 1 191 -237 2248 105 7 0 chr4 40517098 40517394 -143771268 + AluSp SINE Alu 1 298 -15 1852 147 39 29 chr4 40517403 40517710 -143770952 + AluSx SINE Alu 1 310 -2 1939 114 25 0 chr4 40517719 40517999 -143770663 + AluSg SINE Alu 1 287 -23 1779 183 40 108 chr4 40517999 40518253 -143770409 + MSTA LTR MaLR 207 423 -5 733 204 0 0 chr4 40518287 40518419 -143770243 + AluJo SINE Alu 3 134 -178 261 0 0 0 chr4 40518436 40518465 -143770197 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1997 104 0 24 chr4 40518469 40518756 -143769906 - AluSg1 SINE Alu -29 280 1 1859 199 0 0 chr4 40519338 40519650 -143769012 - 7SLRNA srpRNA srpRNA -8 312 1 403 254 43 7 chr4 40519695 40519829 -143768833 - L1ME3 LINE L1 -52 6110 5972 182 128 43 0 chr4 40519830 40519877 -143768785 + T-rich Low_complexity Low_complexity 2 50 0 1276 29 0 0 chr4 40519897 40520034 -143768628 - AluY SINE Alu -174 137 1 1756 95 4 4 chr4 40520080 40520335 -143768327 - AluSx SINE Alu 0 305 51 264 250 40 0 chr4 40520361 40520437 -143768225 - L2 LINE L2 0 3313 3235 391 151 32 43 chr4 40520542 40520635 -143768027 + MER5A DNA MER1_type 1 92 -97 264 30 0 0 chr4 40520654 40520687 -143767975 + (TG)n Simple_repeat Simple_repeat 1 33 0 180 0 0 0 chr4 40520686 40520706 -143767956 + (GA)n Simple_repeat Simple_repeat 1 20 0 * 259 261 0 0 chr4 40521444 40521509 -143767153 + (CGG)n Simple_repeat Simple_repeat 2 66 0 201 23 47 47 chr4 40523570 40523613 -143765049 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 270 154 31 15 chr4 40524091 40524156 -143764506 + L1MC4a LINE L1 5871 5936 -1872 24 0 0 0 chr4 40524349 40524373 -143764289 + AT_rich Low_complexity Low_complexity 1 24 0 223 325 181 0 chr4 40524689 40524772 -143763890 - MIR SINE MIR -118 144 47 2242 121 0 13 chr4 40524955 40525270 -143763392 - AluSx SINE Alu -1 311 1 2373 103 3 0 chr4 40525421 40525731 -143762931 - AluSp SINE Alu -2 311 1 740 134 30 144 chr4 40525957 40526158 -143762504 - MER20B DNA MER1_type -2 217 40 1487 105 14 5 chr4 40526179 40526388 -143762274 - AluSg/x SINE Alu -20 292 82 899 192 44 11 chr4 40526415 40526597 -143762065 + AluJo SINE Alu 1 188 -124 294 95 0 0 chr4 40526718 40526760 -143761902 + (GAAAA)n Simple_repeat Simple_repeat 4 45 0 2174 100 7 13 chr4 40526876 40527039 -143761623 - AluSx SINE Alu -15 297 135 2271 90 0 32 chr4 40527039 40527401 -143761261 - AluY SINE Alu 0 311 1 2174 100 7 13 chr4 40527401 40527536 -143761126 - AluSx SINE Alu -177 135 1 2602 40 0 7 chr4 40527765 40528066 -143760596 - AluY SINE Alu -12 299 1 770 211 0 25 chr4 40528380 40528541 -143760121 + AluJo SINE Alu 2 158 -154 7217 137 17 30 chr4 40528541 40529808 -143758854 + L1PA7 LINE L1 775 2025 -4121 14224 80 2 7 chr4 40529808 40531798 -143756864 + L1PA7 LINE L1 3464 5463 -691 2428 92 0 0 chr4 40531798 40532103 -143756559 + AluY SINE Alu 1 305 -6 14224 80 2 7 chr4 40532103 40532792 -143755870 + L1PA7 LINE L1 5463 6154 0 2366 98 3 0 chr4 40532804 40533109 -143755553 + AluSx SINE Alu 1 306 -6 1165 127 0 0 chr4 40533109 40533259 -143755403 + AluJo SINE Alu 134 283 -29 248 270 0 29 chr4 40533339 40533428 -143755234 - MIR SINE MIR -85 123 38 714 160 0 17 chr4 40533469 40533588 -143755074 + FLAM_C SINE Alu 2 118 -25 25 51 0 0 chr4 40533593 40533632 -143755030 + AT_rich Low_complexity Low_complexity 1 39 0 625 258 220 32 chr4 40533675 40534171 -143754491 - L3 LINE CR1 -601 976 388 183 42 0 0 chr4 40534227 40534251 -143754411 + (TG)n Simple_repeat Simple_repeat 2 25 0 1139 74 0 0 chr4 40534389 40534524 -143754138 - AluSc SINE Alu -174 135 1 209 221 162 78 chr4 40534740 40534894 -143753768 + MIR SINE MIR 96 262 0 272 321 18 37 chr4 40534941 40535050 -143753612 - MER5A DNA MER1_type -1 188 82 636 306 174 34 chr4 40535194 40535887 -143752775 - L2 LINE L2 -1 3312 2527 2309 110 3 0 chr4 40536188 40536497 -143752165 + AluSx SINE Alu 1 310 -2 248 184 0 20 chr4 40536805 40536854 -143751808 - MER44D DNA MER2_type -1 608 561 722 167 0 62 chr4 40536854 40536998 -143751664 + AluJo SINE Alu 2 136 -176 1426 102 127 36 chr4 40537010 40537285 -143751377 - MER44D DNA MER2_type -39 570 1 2198 99 7 0 chr4 40539796 40540079 -143748583 + AluSx SINE Alu 1 285 -27 249 57 0 0 chr4 40540959 40540994 -143747668 + (TTG)n Simple_repeat Simple_repeat 2 36 0 2076 69 0 101 chr4 40540996 40541314 -143747348 - AluY SINE Alu -25 286 1 1988 138 10 7 chr4 40541321 40541618 -143747044 - AluSx SINE Alu -14 298 1 211 294 110 22 chr4 40541635 40541771 -143746891 + L2 LINE L2 2241 2388 -926 256 353 0 0 chr4 40542391 40542476 -143746186 + L2 LINE L2 3188 3272 0 1327 197 25 36 chr4 40542538 40542817 -143745845 - AluJb SINE Alu -20 292 17 1840 106 98 7 chr4 40542836 40543111 -143745551 + AluSx SINE Alu 1 300 -12 466 219 159 7 chr4 40543565 40543716 -143744946 - MIR SINE MIR -17 245 72 326 113 81 0 chr4 40543777 40543839 -143744823 + L2 LINE L2 3173 3239 -74 1896 186 0 0 chr4 40544111 40544417 -143744245 - AluSx SINE Alu -6 306 1 21 0 0 0 chr4 40544494 40544515 -143744147 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 40544681 40544703 -143743959 + AT_rich Low_complexity Low_complexity 1 22 0 2245 120 3 0 chr4 40544772 40545072 -143743590 - AluSx SINE Alu -11 301 1 265 307 47 31 chr4 40545155 40545282 -143743380 - MIR SINE MIR -114 148 20 1564 149 111 0 chr4 40545545 40545806 -143742856 - AluSg SINE Alu -12 298 9 1495 181 3 50 chr4 40545955 40546258 -143742404 + AluJb SINE Alu 1 289 -23 1152 147 6 0 chr4 40546638 40546815 -143741847 - AluSg/x SINE Alu -1 311 134 2542 59 0 3 chr4 40546816 40547120 -143741542 - AluY SINE Alu -8 303 1 2175 100 7 3 chr4 40547619 40547908 -143740754 + AluSq SINE Alu 1 290 -23 512 246 146 6 chr4 40549705 40549876 -143738786 - MIR SINE MIR -55 207 13 715 256 64 12 chr4 40549924 40550098 -143738564 - AluJo SINE Alu -5 307 127 1990 125 16 13 chr4 40550102 40550413 -143738249 - AluSx SINE Alu 0 312 1 2358 61 0 14 chr4 40550472 40550768 -143737894 - AluY SINE Alu -19 292 1 2378 84 0 0 chr4 40550880 40551178 -143737484 - AluSg SINE Alu -7 303 6 691 250 0 0 chr4 40551190 40551326 -143737336 - FLAM_C SINE Alu -6 137 2 1203 78 12 6 chr4 40551829 40551996 -143736666 + AluY SINE Alu 131 298 -13 2569 57 0 3 chr4 40552019 40552319 -143736343 + AluY SINE Alu 1 299 -12 2284 97 0 0 chr4 40552429 40552718 -143735944 + AluSg SINE Alu 3 291 -19 21 57 0 0 chr4 40553275 40553310 -143735352 + AT_rich Low_complexity Low_complexity 1 35 0 1874 154 3 17 chr4 40553893 40554186 -143734476 + AluSx SINE Alu 3 291 -21 2041 143 10 0 chr4 40554200 40554501 -143734161 + AluSq SINE Alu 1 304 -9 339 214 232 6 chr4 40554711 40554758 -143733904 - L1MC5 LINE L1 -32 7929 7894 2573 43 0 3 chr4 40554758 40555057 -143733605 + AluY SINE Alu 1 298 -13 339 214 232 6 chr4 40555057 40555177 -143733485 - L1MC5 LINE L1 -67 7894 7724 2292 81 0 3 chr4 40555354 40555688 -143732974 + AluY SINE Alu 1 333 0 34 24 0 0 chr4 40555731 40555772 -143732890 + AT_rich Low_complexity Low_complexity 1 41 0 595 179 8 49 chr4 40555772 40555895 -143732767 - FLAM_C SINE Alu -25 118 1 230 83 0 56 chr4 40555903 40555939 -143732723 + HSMAR1 DNA Mariner 1 34 -1253 21 0 0 0 chr4 40556597 40556618 -143732044 + AT_rich Low_complexity Low_complexity 1 21 0 308 333 8 60 chr4 40556895 40557012 -143731650 - L2 LINE L2 -26 3246 3136 2409 181 35 0 chr4 40557909 40558339 -143730323 - L1MB3 LINE L1 -1 6182 5738 1298 100 0 6 chr4 40558342 40558522 -143730140 - AluY SINE Alu -8 303 125 1878 89 0 0 chr4 40558530 40558766 -143729896 - AluSg/x SINE Alu -11 301 66 25 31 0 0 chr4 40558911 40558943 -143729719 + AT_rich Low_complexity Low_complexity 1 32 0 851 211 0 26 chr4 40558963 40559119 -143729543 - FRAM SINE Alu -21 155 4 903 152 0 36 chr4 40559227 40559365 -143729297 + FLAM_C SINE Alu 1 133 0 217 358 11 0 chr4 40559398 40559493 -143729169 - L3 LINE CR1 -163 1414 1319 29 47 0 0 chr4 40559518 40559561 -143729101 + AT_rich Low_complexity Low_complexity 1 43 0 1545 178 34 17 chr4 40560108 40560231 -143728431 + AluSx SINE Alu 1 120 -192 183 42 0 0 chr4 40560231 40560255 -143728407 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1545 178 34 17 chr4 40560255 40560423 -143728239 + AluSx SINE Alu 120 297 -15 2327 93 17 0 chr4 40560646 40560946 -143727716 + AluSx SINE Alu 1 305 -7 717 241 0 0 chr4 40561289 40561422 -143727240 - AluJo SINE Alu -178 134 2 1945 148 3 22 chr4 40561457 40561775 -143726887 - AluJb SINE Alu 0 312 1 772 163 0 31 chr4 40561825 40561954 -143726708 - FLAM_C SINE Alu 0 143 19 1064 175 0 10 chr4 40562054 40562248 -143726414 + AluSg/x SINE Alu 121 312 0 1194 70 16 81 chr4 40562381 40562567 -143726095 - AluY SINE Alu -11 300 127 2614 58 0 0 chr4 40562572 40562883 -143725779 - AluY SINE Alu 0 311 1 847 193 0 0 chr4 40562973 40563113 -143725549 + MER46A DNA MER2_type 2 141 -95 879 184 0 46 chr4 40563117 40563291 -143725371 + FRAM SINE Alu 1 166 0 1115 202 46 5 chr4 40563358 40563576 -143725086 + AluJb SINE Alu 5 231 -81 872 86 0 9 chr4 40564085 40564201 -143724461 + AluSq/x SINE Alu 1 115 -197 429 145 0 0 chr4 40564216 40564285 -143724377 + AluYb8 SINE Alu 229 297 -21 315 350 84 15 chr4 40564306 40564509 -143724153 - L2 LINE L2 -548 2766 2550 1641 148 19 4 chr4 40564783 40565039 -143723623 - AluJb SINE Alu -37 275 16 191 244 0 0 chr4 40565040 40565085 -143723577 + MIR SINE MIR 192 236 -26 717 255 75 19 chr4 40566484 40566696 -143721966 + MIR SINE MIR 4 227 -35 1403 152 18 0 chr4 40566696 40566913 -143721749 - AluJb SINE Alu -7 305 85 2492 93 0 0 chr4 40567261 40567574 -143721088 - AluSq SINE Alu 0 313 1 1474 267 166 13 chr4 40568027 40568644 -143720018 + L2 LINE L2 2003 2735 -579 2177 142 0 0 chr4 40568644 40568953 -143719709 + AluSx SINE Alu 2 310 -2 1474 267 166 13 chr4 40568953 40569014 -143719648 + L2 LINE L2 2735 2785 -529 2081 121 0 22 chr4 40569516 40569831 -143718831 - AluSx SINE Alu -4 308 1 623 215 144 63 chr4 40570017 40570141 -143718521 + L1ME LINE L1 5385 5498 -664 2353 98 0 16 chr4 40570141 40570458 -143718204 + AluSx SINE Alu 1 312 0 623 215 144 63 chr4 40570458 40570684 -143717978 + L1ME LINE L1 5498 5769 -393 2539 174 40 65 chr4 40570799 40571403 -143717259 - L1M3 LINE L1 -404 5779 5161 839 168 0 0 chr4 40571403 40571528 -143717134 - FLAM_A SINE Alu -4 129 5 2539 174 40 65 chr4 40571528 40571560 -143717102 - L1M3 LINE L1 -1022 5161 5130 2141 134 3 6 chr4 40571560 40571873 -143716789 - AluSx SINE Alu 0 312 1 2539 174 40 65 chr4 40571873 40572095 -143716567 - L1M3 LINE L1 -1053 5130 4941 2245 72 20 10 chr4 40572107 40572445 -143716217 - AluY SINE Alu 0 311 1 28 0 0 0 chr4 40572668 40572696 -143715966 + AT_rich Low_complexity Low_complexity 1 28 0 1987 116 0 47 chr4 40572978 40573297 -143715365 + AluSx SINE Alu 4 307 -5 801 162 0 0 chr4 40573387 40573504 -143715158 - AluJb SINE Alu -195 117 1 1065 134 35 6 chr4 40573504 40573676 -143714986 - L1M2 LINE L1 -683 5608 5432 1458 161 124 22 chr4 40573676 40573950 -143714712 - AluSx SINE Alu -6 306 5 366 161 0 0 chr4 40573961 40574017 -143714645 - MER5A DNA MER1_type 0 189 134 243 140 0 0 chr4 40574026 40574076 -143714586 + (T)n Simple_repeat Simple_repeat 1 50 0 381 170 217 19 chr4 40576512 40576618 -143712044 - MER5A DNA MER1_type -62 127 1 1700 156 22 0 chr4 40576683 40576959 -143711703 - AluSx SINE Alu -30 282 1 667 180 47 0 chr4 40576959 40577087 -143711575 + MER105 DNA DNA 70 203 -1 1868 149 0 48 chr4 40577111 40577426 -143711236 + AluJb SINE Alu 12 311 -1 2514 25 0 0 chr4 40577569 40577851 -143710811 + AluY SINE Alu 1 282 -29 198 0 0 0 chr4 40577851 40577873 -143710789 + (CTAAA)n Simple_repeat Simple_repeat 3 24 0 1766 147 3 33 chr4 40577945 40578251 -143710411 + AluSx SINE Alu 1 297 -15 2216 86 0 32 chr4 40578251 40578565 -143710097 + AluY SINE Alu 1 304 -7 298 216 159 0 chr4 40579308 40579396 -143709266 + MER58B DNA MER1_type 231 332 -9 1879 157 3 10 chr4 40579397 40579691 -143708971 + AluSx SINE Alu 1 292 -20 286 297 150 12 chr4 40579750 40579996 -143708666 + L2 LINE L2 1998 2277 -1037 26 74 0 0 chr4 40580896 40580950 -143707712 + AT_rich Low_complexity Low_complexity 1 54 0 1387 145 63 0 chr4 40581831 40582052 -143706610 + AluJb SINE Alu 73 307 -5 207 0 0 0 chr4 40585025 40585048 -143703614 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 254 211 213 43 chr4 40587036 40587180 -143701482 + MIR SINE MIR 40 204 -58 1843 132 7 7 chr4 40587623 40587896 -143700766 + AluSx SINE Alu 1 273 -39 833 190 25 12 chr4 40588136 40588299 -143700363 + FRAM SINE Alu 6 170 -6 2295 94 0 17 chr4 40588309 40588607 -143700055 + AluSg SINE Alu 3 295 -15 2042 95 20 34 chr4 40588610 40588904 -143699758 + AluSq SINE Alu 1 290 -23 1885 119 0 43 chr4 40589369 40589505 -143699157 + AluSq SINE Alu 1 120 -193 2030 118 16 39 chr4 40589505 40589810 -143698852 + AluSx SINE Alu 1 298 -14 1885 119 0 43 chr4 40589810 40589950 -143698712 + AluSq SINE Alu 120 265 -48 1789 64 14 0 chr4 40589954 40590173 -143698489 + AluSg/x SINE Alu 73 294 -16 2197 101 0 3 chr4 40590374 40590670 -143697992 + AluSx SINE Alu 1 295 -17 1689 153 3 28 chr4 40590746 40591034 -143697628 + AluJb SINE Alu 14 294 -18 1802 88 88 8 chr4 40591276 40591571 -143697091 - AluSp SINE Alu 0 316 1 307 295 127 34 chr4 40592046 40592283 -143696379 + HAL1 LINE L1 1 259 -2248 2286 47 82 0 chr4 40592367 40592646 -143696016 + AluY SINE Alu 1 302 -9 318 229 73 9 chr4 40593116 40593225 -143695437 + HAL1 LINE L1 1451 1566 -941 1082 221 47 37 chr4 40593225 40593387 -143695275 + AluJo SINE Alu 1 169 -133 194 0 39 0 chr4 40593387 40593413 -143695249 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 1082 221 47 37 chr4 40593413 40593549 -143695113 + AluJo SINE Alu 169 302 0 523 267 136 62 chr4 40593571 40593945 -143694717 + HAL1 LINE L1 1632 2033 -474 737 35 0 0 chr4 40593963 40594050 -143694612 + L1PA4 LINE L1 6066 6152 -3 2311 76 0 3 chr4 40594203 40594491 -143694171 + AluY SINE Alu 1 287 -24 422 83 14 0 chr4 40594491 40594563 -143694099 + (TA)n Simple_repeat Simple_repeat 1 73 0 953 160 64 0 chr4 40594566 40594722 -143693940 + AluJb SINE Alu 127 292 -20 728 129 60 9 chr4 40594733 40594849 -143693813 + FLAM_C SINE Alu 2 123 -20 308 141 141 39 chr4 40594868 40594946 -143693716 + L1MA9 LINE L1 6227 6312 0 613 191 17 0 chr4 40594946 40595061 -143693601 - L1MB7 LINE L1 -58 6126 6010 21 0 0 0 chr4 40595069 40595090 -143693572 + AT_rich Low_complexity Low_complexity 1 21 0 2484 54 0 7 chr4 40595258 40595554 -143693108 + AluSq SINE Alu 1 294 -19 229 260 42 0 chr4 40595562 40595658 -143693004 - L1MC4 LINE L1 -1339 6703 6604 1784 179 3 3 chr4 40595724 40596021 -143692641 + AluJb SINE Alu 1 297 -15 1432 171 9 65 chr4 40596268 40596589 -143692073 + AluJb SINE Alu 1 303 -9 243 195 0 0 chr4 40596643 40596684 -143691978 + HAL1 LINE L1 794 834 -1673 1308 153 0 26 chr4 40596709 40596938 -143691724 + AluJb SINE Alu 82 304 -8 1742 97 4 13 chr4 40597036 40597273 -143691389 + AluSg SINE Alu 1 235 -75 1383 183 18 5 chr4 40597392 40597616 -143691046 + AluSc SINE Alu 64 290 -19 1979 130 10 0 chr4 40597737 40598029 -143690633 - AluSx SINE Alu 0 312 18 664 161 0 0 chr4 40598041 40598134 -143690528 - AluS SINE Alu -213 99 7 2147 118 0 16 chr4 40598217 40598530 -143690132 - AluSc SINE Alu -1 308 1 24 0 0 0 chr4 40598530 40598554 -143690108 + AT_rich Low_complexity Low_complexity 1 24 0 2229 88 0 17 chr4 40598558 40598853 -143689809 - AluSp SINE Alu -23 290 1 1871 127 14 3 chr4 40598855 40599147 -143689515 - AluSq SINE Alu -18 295 1 2097 128 3 0 chr4 40599209 40599505 -143689157 - AluSx SINE Alu -9 303 7 2178 102 0 13 chr4 40599519 40599822 -143688840 - AluY SINE Alu -12 299 1 1692 178 40 3 chr4 40599859 40600157 -143688505 + AluJo SINE Alu 1 309 -3 360 170 28 102 chr4 40600205 40600334 -143688328 + FRAM SINE Alu 71 157 -9 1772 114 0 117 chr4 40600340 40600452 -143688210 + AluSx SINE Alu 25 4294967087 -521 2371 94 7 0 chr4 40600452 40601115 -143687547 + AluSq SINE Alu 1 665 0 210 71 0 0 chr4 40601115 40601143 -143687519 + (GGAA)n Simple_repeat Simple_repeat 3 30 0 2160 83 41 10 chr4 40601154 40601444 -143687218 + AluSp SINE Alu 1 299 -14 2294 86 10 7 chr4 40601458 40601760 -143686902 + AluSq SINE Alu 7 309 -4 1213 116 29 0 chr4 40601760 40601932 -143686730 + AluSp SINE Alu 137 313 0 227 30 0 30 chr4 40601936 40601969 -143686693 + (GAAA)n Simple_repeat Simple_repeat 3 34 0 730 188 106 43 chr4 40602289 40602497 -143686165 - MIR SINE MIR -11 251 31 1773 106 89 32 chr4 40602508 40602790 -143685872 - AluSq SINE Alu -15 298 1 2280 91 7 3 chr4 40602948 40603255 -143685407 - AluY SINE Alu -3 308 1 1878 123 62 67 chr4 40603314 40603473 -143685189 + THE1C LTR MaLR 1 159 -216 2088 134 0 0 chr4 40603473 40603780 -143684882 - AluSx SINE Alu -5 307 1 1878 123 62 67 chr4 40603780 40603994 -143684668 + THE1C LTR MaLR 159 372 -3 1804 112 89 0 chr4 40603995 40604276 -143684386 + AluSx SINE Alu 4 307 0 226 180 60 0 chr4 40604359 40604409 -143684253 + HAL1 LINE L1 2321 2373 -134 1323 157 5 9 chr4 40604641 40604857 -143683805 - AluJb SINE Alu -11 301 87 909 199 45 15 chr4 40604984 40605184 -143683478 - AluJo SINE Alu -3 309 104 1061 85 0 0 chr4 40605184 40605313 -143683349 + AluY SINE Alu 1 129 -182 1111 63 0 0 chr4 40605426 40605553 -143683109 - AluY SINE Alu -180 131 5 394 267 82 30 chr4 40605559 40605694 -143682968 - HAL1 LINE L1 -1130 1377 1236 2345 106 0 0 chr4 40605771 40606072 -143682590 - AluSg SINE Alu -8 302 2 922 269 157 73 chr4 40606158 40606577 -143682085 - L2 LINE L2 0 3313 2931 1377 193 38 51 chr4 40606577 40606893 -143681769 + AluJo SINE Alu 1 312 0 922 269 157 73 chr4 40606893 40607075 -143681587 - L2 LINE L2 -382 2931 2766 1938 109 41 31 chr4 40607075 40607368 -143681294 + AluSx SINE Alu 1 296 -16 922 269 157 73 chr4 40607368 40607660 -143681002 - L2 LINE L2 -547 2766 2357 2325 85 6 19 chr4 40607677 40607994 -143680668 - AluSp SINE Alu 0 313 1 1810 107 11 4 chr4 40607997 40608260 -143680402 - AluSx SINE Alu -4 308 44 * 1887 135 0 0 chr4 40608259 40608526 -143680136 - AluJb SINE Alu -2 310 44 1477 169 56 53 chr4 40608720 40608857 -143679805 - AluJo SINE Alu -17 285 150 198 0 0 0 chr4 40608857 40608879 -143679783 + (TA)n Simple_repeat Simple_repeat 1 22 0 1477 169 56 53 chr4 40608879 40609025 -143679637 - AluJo SINE Alu -152 150 1 201 138 0 0 chr4 40609034 40609063 -143679599 - MIR SINE MIR -116 146 118 2450 63 3 0 chr4 40609221 40609520 -143679142 + AluY SINE Alu 1 300 -11 2221 99 17 3 chr4 40610232 40610534 -143678128 - AluSp SINE Alu -7 306 1 1740 99 91 60 chr4 40610883 40610925 -143677737 - THE1C LTR MaLR 0 375 336 1877 66 160 0 chr4 40610925 40611206 -143677456 + AluSq SINE Alu 2 321 0 1740 99 91 60 chr4 40611206 40611526 -143677136 - THE1C LTR MaLR -39 336 1 1039 173 41 10 chr4 40611764 40611961 -143676701 - AluJb SINE Alu -18 294 92 442 143 0 0 chr4 40612278 40612341 -143676321 - Alu SINE Alu -14 298 236 2181 101 0 3 chr4 40612370 40612657 -143676005 - AluSx SINE Alu -26 286 1 2208 94 7 7 chr4 40612662 40612950 -143675712 - AluSp SINE Alu -25 288 1 1699 171 10 14 chr4 40612952 40613244 -143675418 - AluSx SINE Alu -21 291 1 665 200 157 29 chr4 40613431 40613571 -143675091 + AluJb SINE Alu 134 291 -21 23 0 0 0 chr4 40613920 40613943 -143674719 + AT_rich Low_complexity Low_complexity 1 23 0 25 51 0 0 chr4 40615524 40615563 -143673099 + AT_rich Low_complexity Low_complexity 1 39 0 1476 153 19 88 chr4 40616537 40616857 -143671805 - AluJo SINE Alu -13 299 2 2153 93 0 4 chr4 40617426 40617749 -143670913 - AluSc SINE Alu 0 322 1 2056 121 10 0 chr4 40617971 40618261 -143670401 - AluSg SINE Alu -17 293 1 199 267 105 12 chr4 40619515 40619601 -143669061 + MIR SINE MIR 157 250 -12 2074 138 7 0 chr4 40620333 40620629 -143668033 + AluSg SINE Alu 1 298 -12 2388 87 0 6 chr4 40620634 40620946 -143667716 + AluY SINE Alu 1 310 -1 949 186 0 23 chr4 40621181 40621353 -143667309 - AluJo SINE Alu -46 266 99 2147 118 3 10 chr4 40621377 40621682 -143666980 - AluSx SINE Alu -9 303 1 1195 165 46 42 chr4 40621859 40622096 -143666566 + AluJo SINE Alu 51 288 -24 1804 118 20 106 chr4 40622105 40622453 -143666209 + AluYb8 SINE Alu 1 318 0 3331 115 43 36 chr4 40622454 40622631 -143666031 + HSMAR2 DNA Mariner 154 328 -974 1552 204 7 31 chr4 40622631 40622920 -143665742 - AluJb SINE Alu -19 283 2 3331 115 43 36 chr4 40622920 40623299 -143665363 + HSMAR2 DNA Mariner 328 714 -588 703 165 241 0 chr4 40623299 40623432 -143665230 + AluJb SINE Alu 134 298 -14 3835 103 31 18 chr4 40623432 40624005 -143664657 + HSMAR2 DNA Mariner 715 1295 -7 486 182 20 0 chr4 40624013 40624112 -143664550 - L1MB3 LINE L1 -85 6098 5998 413 191 138 21 chr4 40624115 40624209 -143664453 - AluJb SINE Alu -91 221 117 1633 131 120 22 chr4 40624209 40624476 -143664186 - AluSx SINE Alu -19 293 1 2220 115 0 0 chr4 40624749 40625054 -143663608 - AluSx SINE Alu -7 305 1 379 248 134 40 chr4 40625287 40625436 -143663226 - MIR SINE MIR 0 262 100 1926 101 0 89 chr4 40625668 40625995 -143662667 - AluSx SINE Alu -14 298 1 2123 97 0 72 chr4 40626042 40626363 -143662299 - AluSx SINE Alu -14 298 1 236 298 274 0 chr4 40627580 40627664 -143660998 + L2 LINE L2 3157 3263 -9 1828 164 0 3 chr4 40627671 40627958 -143660704 + AluJb SINE Alu 1 286 -26 1540 91 5 0 chr4 40627969 40628167 -143660495 + AluSp SINE Alu 1 199 -114 420 197 0 0 chr4 40628167 40628233 -143660429 + AluSp SINE Alu 231 296 -17 2142 106 3 0 chr4 40628521 40628805 -143659857 + AluSg SINE Alu 1 285 -25 307 273 38 83 chr4 40629014 40629069 -143659593 - MIR SINE MIR -78 184 128 2141 67 16 0 chr4 40629069 40629362 -143659300 + AluSg SINE Alu 25 321 0 307 273 38 83 chr4 40629362 40629437 -143659225 - MIR SINE MIR -134 128 59 180 0 0 0 chr4 40629536 40629556 -143659106 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 573 84 0 0 chr4 40629597 40629668 -143658994 + AluS SINE Alu 14 84 -228 1882 124 0 0 chr4 40629668 40629927 -143658735 - AluSx SINE Alu -53 259 1 299 134 239 30 chr4 40629927 40629994 -143658668 - AluSc SINE Alu -119 180 100 1879 138 4 7 chr4 40630010 40630286 -143658376 - AluSx SINE Alu -37 275 1 2210 102 3 0 chr4 40630383 40630668 -143657994 - AluSg SINE Alu -24 286 1 1225 138 5 0 chr4 40630745 40630933 -143657729 - AluSg/x SINE Alu -13 297 109 735 179 6 42 chr4 40631833 40632001 -143656661 + L1MA5 LINE L1 6127 6288 -12 261 0 0 0 chr4 40632141 40632170 -143656492 + (TA)n Simple_repeat Simple_repeat 1 29 0 632 179 104 60 chr4 40632175 40632309 -143656353 - FRAM SINE Alu -30 146 7 901 199 16 126 chr4 40632321 40632567 -143656095 - AluJo SINE Alu -92 220 2 1392 164 109 8 chr4 40632683 40632939 -143655723 + AluSg SINE Alu 1 282 -28 2056 121 10 0 chr4 40633216 40633506 -143655156 + AluSg SINE Alu 1 293 -17 2417 87 0 10 chr4 40633728 40634037 -143654625 + AluSq SINE Alu 1 306 -7 1564 184 42 3 chr4 40634467 40634750 -143653912 + AluSx SINE Alu 1 294 -18 198 103 0 0 chr4 40635418 40635447 -143653215 + (A)n Simple_repeat Simple_repeat 1 29 0 1897 127 10 20 chr4 40635745 40636037 -143652625 + AluSq SINE Alu 1 289 -24 31 68 0 0 chr4 40636274 40636333 -143652329 + AT_rich Low_complexity Low_complexity 1 59 0 1549 143 68 11 chr4 40636859 40637138 -143651524 + AluJb SINE Alu 1 295 -17 2172 145 0 62 chr4 40637349 40637707 -143650955 + MER1B DNA MER1_type 2 337 0 1368 175 91 29 chr4 40639441 40639523 -143649139 + AluJo SINE Alu 1 76 -236 2403 80 3 3 chr4 40639523 40639824 -143648838 + AluY SINE Alu 1 301 -10 1368 175 91 29 chr4 40639824 40640015 -143648647 + AluJo SINE Alu 76 291 -21 406 269 139 58 chr4 40640704 40640825 -143647837 - MIR SINE MIR -5 257 147 1456 200 44 0 chr4 40640825 40641120 -143647542 - AluJo SINE Alu -4 308 1 406 269 139 58 chr4 40641120 40641221 -143647441 - MIR SINE MIR -115 147 17 452 345 148 25 chr4 40641926 40642485 -143646177 + L2 LINE L2 189 816 -2498 872 181 9 126 chr4 40642520 40642735 -143645927 - AluJo SINE Alu -84 228 39 26 0 0 0 chr4 40642895 40642921 -143645741 + AT_rich Low_complexity Low_complexity 1 26 0 220 311 189 38 chr4 40643213 40643425 -143645237 + L2 LINE L2 1676 1919 -1395 262 226 226 92 chr4 40643490 40643557 -143645105 + MIR SINE MIR 71 128 -134 2180 122 0 3 chr4 40643557 40643861 -143644801 + AluSx SINE Alu 7 309 -3 262 226 226 92 chr4 40643861 40643957 -143644705 + MIR SINE MIR 128 256 -6 225 447 24 0 chr4 40644224 40644347 -143644315 + L2 LINE L2 3143 3268 -4 4032 244 85 34 chr4 40644743 40646063 -143642599 + L1M4 LINE L1 836 2087 -4557 2339 85 0 0 chr4 40646063 40646376 -143642286 + AluSx SINE Alu 1 313 0 4032 244 85 34 chr4 40646376 40646600 -143642062 + L1M4 LINE L1 2087 2298 -4346 2592 68 0 0 chr4 40646600 40646907 -143641755 + AluY SINE Alu 1 307 -4 4032 244 85 34 chr4 40646907 40647351 -143641311 + L1M4 LINE L1 2298 3053 -3591 870 116 7 54 chr4 40647352 40647499 -143641163 - FLAM_C SINE Alu -3 140 1 2527 221 111 42 chr4 40647499 40647578 -143641084 + L1M4 LINE L1 4899 4971 -1673 212 75 0 25 chr4 40647578 40647618 -143641044 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2527 221 111 42 chr4 40647618 40648157 -143640505 + L1M4 LINE L1 4971 5600 -1044 1800 112 0 4 chr4 40648157 40648399 -143640263 - AluSq SINE Alu -17 296 56 2527 221 111 42 chr4 40648399 40648670 -143639992 + L1M4 LINE L1 5600 5851 -793 260 178 41 14 chr4 40648667 40648740 -143639922 + L1MB3 LINE L1 6109 6183 0 * 806 194 22 0 chr4 40648832 40648971 -143639691 - FRAM SINE Alu -31 145 4 255 318 94 56 chr4 40649152 40649385 -143639277 + L1M3b LINE L1 176 417 -5864 272 125 0 0 chr4 40649441 40649481 -143639181 + L1MA4 LINE L1 5554 5593 -575 906 159 0 0 chr4 40649481 40649619 -143639043 + FLAM_C SINE Alu 1 138 -5 2914 144 5 84 chr4 40649619 40649711 -143638951 + L1MA4 LINE L1 5585 5683 -620 1848 169 0 6 chr4 40649711 40650024 -143638638 + AluSx SINE Alu 1 311 -1 2914 144 5 84 chr4 40650024 40650317 -143638345 + L1MA4 LINE L1 5683 5998 -305 1901 148 20 7 chr4 40650317 40650621 -143638041 + AluJo SINE Alu 1 308 -4 2914 144 5 84 chr4 40650621 40650709 -143637953 + L1MA4 LINE L1 5998 6007 -296 1903 127 21 17 chr4 40650709 40651000 -143637662 + AluSg SINE Alu 2 293 -17 2914 144 5 84 chr4 40651000 40651118 -143637544 + L1MA4 LINE L1 6007 6133 -170 542 194 9 9 chr4 40651117 40651225 -143637437 - FRAM SINE Alu -6 170 63 * 624 164 0 0 chr4 40651225 40651329 -143637333 + L1MA4 LINE L1 6185 6288 -12 28 29 0 0 chr4 40651656 40651691 -143636971 + AT_rich Low_complexity Low_complexity 1 35 0 2288 114 0 3 chr4 40653371 40653677 -143634985 + AluSc SINE Alu 1 305 -4 274 232 49 24 chr4 40654244 40654326 -143634336 - MIR SINE MIR -2 260 177 345 311 142 16 chr4 40654429 40654738 -143633924 - L1ME LINE L1 -388 5733 5386 640 154 106 0 chr4 40654935 40655039 -143633623 + FLAM_A SINE Alu 4 118 -15 23 0 0 0 chr4 40655043 40655066 -143633596 + AT_rich Low_complexity Low_complexity 1 23 0 1462 153 110 4 chr4 40655088 40655324 -143633338 - AluSx SINE Alu -51 261 1 2279 103 0 13 chr4 40655628 40655940 -143632722 - AluSg SINE Alu -2 308 1 254 309 106 0 chr4 40656011 40656105 -143632557 + L2 LINE L2 3202 3305 -8 469 250 48 24 chr4 40656663 40656831 -143631831 - MIR SINE MIR 0 262 91 1836 123 0 85 chr4 40656934 40657252 -143631410 + AluSx SINE Alu 1 291 -21 270 0 0 0 chr4 40657257 40657287 -143631375 + (CA)n Simple_repeat Simple_repeat 2 31 0 1489 126 11 101 chr4 40657703 40657855 -143630807 - AluJo SINE Alu -43 269 152 1985 147 0 0 chr4 40657855 40658140 -143630522 - AluSx SINE Alu -27 285 1 1489 126 11 101 chr4 40658140 40658265 -143630397 - AluJo SINE Alu -160 152 17 713 198 0 0 chr4 40658701 40658817 -143629845 + FLAM_C SINE Alu 2 117 -16 1285 178 57 70 chr4 40659104 40659337 -143629325 + L1MB4 LINE L1 4697 4931 -1215 1956 155 0 7 chr4 40659337 40659647 -143629015 + AluSx SINE Alu 1 308 -4 1285 178 57 70 chr4 40659647 40659901 -143628761 + L1MB4 LINE L1 4931 5332 -814 1207 166 0 10 chr4 40659901 40660127 -143628535 + AluJb SINE Alu 86 309 0 1645 176 117 28 chr4 40660135 40660812 -143627850 + L1MB4 LINE L1 5323 6180 0 2314 97 7 7 chr4 40661203 40661513 -143627149 - AluSq SINE Alu -3 310 1 1257 112 6 0 chr4 40661680 40661850 -143626812 - AluSq SINE Alu -10 303 133 1886 115 49 7 chr4 40661889 40662176 -143626486 + AluSx SINE Alu 1 299 -13 22 0 0 0 chr4 40662346 40662368 -143626294 + AT_rich Low_complexity Low_complexity 1 22 0 1759 200 3 3 chr4 40663269 40663574 -143625088 + AluJo SINE Alu 1 305 -7 277 346 0 0 chr4 40663613 40663694 -143624968 - L2 LINE L2 -49 3264 3184 614 312 55 9 chr4 40664424 40664642 -143624020 - MIR SINE MIR -27 235 8 248 162 44 0 chr4 40664850 40664918 -143623744 + L1ME4a LINE L1 6050 6120 -1 185 149 128 43 chr4 40665735 40665782 -143622880 + L2 LINE L2 3175 3225 -88 276 214 18 0 chr4 40666769 40666825 -143621837 + MLT1J LTR MaLR 86 142 -369 1442 158 139 8 chr4 40667146 40667412 -143621250 - AluJo SINE Alu -11 301 1 2395 79 0 7 chr4 40667831 40668134 -143620528 + AluY SINE Alu 1 301 -10 2155 108 7 0 chr4 40668263 40668559 -143620103 - AluSc SINE Alu -11 298 1 29 47 0 0 chr4 40669043 40669086 -143619576 + AT_rich Low_complexity Low_complexity 1 43 0 3821 132 38 29 chr4 40670193 40670926 -143617736 - L1MA5A LINE L1 -10 6287 5548 827 189 82 25 chr4 40671065 40671308 -143617354 - L1MB8 LINE L1 -16 6162 5906 1791 152 38 3 chr4 40671311 40671626 -143617036 + THE1B LTR MaLR 3 328 -36 277 136 0 0 chr4 40671615 40671683 -143616979 + Alu SINE Alu 250 317 0 * 505 193 181 0 chr4 40671696 40671890 -143616772 - L1MA5A LINE L1 -742 5424 5205 265 340 31 10 chr4 40672113 40672210 -143616452 - L2 LINE L2 -6 3266 3168 30 0 0 0 chr4 40672315 40672345 -143616317 + AT_rich Low_complexity Low_complexity 1 30 0 2205 96 4 0 chr4 40672718 40672998 -143615664 - AluSx SINE Alu -31 281 1 1628 197 20 0 chr4 40673148 40673447 -143615215 - AluJb SINE Alu -7 305 1 2167 105 21 0 chr4 40673458 40673744 -143614918 - AluSg SINE Alu -18 292 1 1740 142 64 10 chr4 40674497 40674793 -143613869 + AluSx SINE Alu 1 312 0 204 125 0 0 chr4 40674804 40674836 -143613826 + (GAGAA)n Simple_repeat Simple_repeat 4 35 0 1410 183 58 17 chr4 40674841 40675136 -143613526 + AluJb SINE Alu 6 312 0 1694 143 0 117 chr4 40675150 40675492 -143613170 + AluJb SINE Alu 1 302 0 5350 180 31 24 chr4 40675501 40675949 -143612713 - L1MA5A LINE L1 -1158 4988 4544 2201 108 3 0 chr4 40675949 40676244 -143612418 + AluSp SINE Alu 1 296 -17 5350 180 31 24 chr4 40676244 40677069 -143611593 - L1MA5A LINE L1 -1602 4544 3707 1125 214 57 9 chr4 40677067 40677403 -143611259 + L1MA4 LINE L1 4955 5306 -840 * 233 143 54 0 chr4 40677403 40677459 -143611203 + A-rich Low_complexity Low_complexity 5 63 0 2203 88 24 0 chr4 40677482 40677778 -143610884 + AluSc SINE Alu 1 303 -6 3285 164 95 13 chr4 40677785 40678534 -143610128 + L1MA4 LINE L1 5471 6280 -20 1574 204 39 34 chr4 40678534 40678922 -143609740 + MLT1B LTR MaLR 1 390 0 2171 87 11 3 chr4 40680139 40680425 -143608237 - AluSx SINE Alu -18 294 7 1723 163 0 42 chr4 40680645 40680952 -143607710 + AluJo SINE Alu 13 306 -6 2360 86 0 22 chr4 40680955 40681270 -143607392 + AluY SINE Alu 1 308 -3 2121 143 82 86 chr4 40681276 40681750 -143606912 + Tigger3(Golem) DNA MER2_type 2507 2980 -49 2169 57 96 0 chr4 40681750 40682032 -143606630 - AluY SINE Alu -2 309 1 2121 143 82 86 chr4 40682032 40682081 -143606581 + Tigger3(Golem) DNA MER2_type 2980 3028 -1 2079 148 0 3 chr4 40682552 40682849 -143605813 - AluJb SINE Alu -12 300 5 236 146 0 0 chr4 40683001 40683042 -143605620 + Alu SINE Alu 1 41 -261 216 209 209 22 chr4 40683155 40683246 -143605416 + MIR SINE MIR 59 166 -96 249 268 189 55 chr4 40683889 40684016 -143604646 + MIR SINE MIR 47 190 -72 287 247 0 62 chr4 40684451 40684532 -143604130 - L2 LINE L2 -220 3052 2977 642 115 10 10 chr4 40684724 40684820 -143603842 - AluS SINE Alu -217 96 1 1487 174 71 20 chr4 40684857 40685151 -143603511 - AluSx SINE Alu -3 309 1 2091 72 11 0 chr4 40685317 40685582 -143603080 - AluSp SINE Alu -16 297 30 584 213 55 6 chr4 40686043 40686226 -143602436 + L1M4 LINE L1 2896 3087 -3059 571 125 0 0 chr4 40686272 40686352 -143602310 + AluJ/FLAM SINE Alu 1 80 -232 1053 153 10 49 chr4 40686354 40686557 -143602105 - AluJb SINE Alu -31 281 87 1727 261 65 4 chr4 40686570 40687064 -143601598 - MLT1F LTR MaLR -8 534 11 2123 139 0 3 chr4 40687138 40687440 -143601222 - AluSx SINE Alu -11 301 1 2002 92 50 7 chr4 40687811 40688094 -143600568 + AluSg SINE Alu 2 296 -14 2045 136 0 0 chr4 40688133 40688420 -143600242 + AluSq SINE Alu 1 287 -26 889 200 7 0 chr4 40688545 40688700 -143599962 + FRAM SINE Alu 9 164 -12 237 65 0 0 chr4 40689849 40689880 -143598782 + (T)n Simple_repeat Simple_repeat 1 31 0 1469 191 144 62 chr4 40690054 40690370 -143598292 - L1M4 LINE L1 -748 5398 5109 231 36 0 0 chr4 40690370 40690398 -143598264 + (ATTG)n Simple_repeat Simple_repeat 1 28 0 1644 114 138 0 chr4 40690399 40690645 -143598017 - AluSx SINE Alu -32 280 1 1469 191 144 62 chr4 40690645 40690966 -143597696 - L1M4 LINE L1 -1036 5110 4707 909 232 65 4 chr4 40691012 40691288 -143597374 + L1ME LINE L1 5526 5818 -348 280 245 71 31 chr4 40691328 40691426 -143597236 + L1MA10 LINE L1 6170 6271 -63 778 210 109 16 chr4 40691437 40691694 -143596968 - MER21B LTR ERV1 -109 754 474 1697 132 43 29 chr4 40691701 40691982 -143596680 - AluSx SINE Alu -27 285 1 325 237 13 13 chr4 40692027 40692103 -143596559 + 5S rRNA rRNA 44 119 -2 744 213 209 4 chr4 40692346 40692576 -143596086 - MER21B LTR ERV1 -566 297 21 1587 182 40 24 chr4 40692658 40692954 -143595708 - AluJb SINE Alu -11 301 1 269 256 111 17 chr4 40692980 40693097 -143595565 + L1ME LINE L1 5514 5641 -521 2065 163 19 11 chr4 40693144 40693519 -143595143 + MER57A LTR ERV1 8 385 -18 2289 80 3 0 chr4 40693520 40693807 -143594855 + AluSx SINE Alu 1 288 -24 2265 100 0 0 chr4 40693937 40694226 -143594436 + AluSc SINE Alu 1 289 -20 540 214 43 8 chr4 40694316 40694433 -143594229 + AluJo SINE Alu 121 241 -71 1712 164 10 27 chr4 40694439 40694738 -143593924 + AluJo SINE Alu 10 303 -9 2019 143 3 10 chr4 40694761 40695075 -143593587 + AluSx SINE Alu 1 312 0 314 211 56 0 chr4 40695130 40695201 -143593461 + AluJo SINE Alu 226 300 -2 1437 164 148 0 chr4 40695224 40695487 -143593175 + AluSx SINE Alu 1 302 0 195 315 37 65 chr4 40695886 40695909 -143592753 - MIR SINE MIR -73 135 113 1531 151 49 66 chr4 40695909 40696213 -143592449 - AluJb SINE Alu -13 299 1 195 315 37 65 chr4 40696213 40696297 -143592365 - MIR SINE MIR -95 113 31 282 242 154 77 chr4 40696343 40696525 -143592137 + L2 LINE L2 3117 3312 -1 685 211 6 42 chr4 40697021 40697187 -143591475 + FRAM SINE Alu 3 162 -4 1290 215 96 0 chr4 40697703 40697964 -143590698 - AluJo SINE Alu -21 291 6 375 197 0 0 chr4 40698096 40698167 -143590495 + FRAM SINE Alu 25 95 -71 498 75 0 0 chr4 40698367 40698434 -143590228 + (CA)n Simple_repeat Simple_repeat 2 68 0 2015 112 9 67 chr4 40698747 40699078 -143589584 + AluSx SINE Alu 1 312 0 2369 79 0 7 chr4 40699140 40699443 -143589219 + AluY SINE Alu 1 301 -10 2270 98 3 3 chr4 40699655 40699962 -143588700 + AluSp SINE Alu 1 307 -6 2529 50 7 3 chr4 40700564 40700867 -143587795 + AluY SINE Alu 1 304 -7 2176 123 0 16 chr4 40701305 40701622 -143587040 + AluSx SINE Alu 1 312 0 428 185 74 62 chr4 40701878 40702019 -143586643 + L1 LINE L1 3190 3335 -2811 2001 141 10 7 chr4 40702019 40702323 -143586339 + AluSx SINE Alu 1 305 -7 428 185 74 62 chr4 40702323 40702343 -143586319 + L1 LINE L1 3335 3353 -2793 591 201 0 37 chr4 40702345 40702479 -143586183 + FLAM_C SINE Alu 1 129 -14 1740 162 30 3 chr4 40702558 40702860 -143585802 + AluSx SINE Alu 1 310 -2 1512 122 13 13 chr4 40702897 40703127 -143585535 + MER30 DNA MER1_type 1 230 0 796 173 89 0 chr4 40703151 40703330 -143585332 - MSTB2 LTR MaLR -262 195 1 1037 216 166 12 chr4 40703356 40703615 -143585047 + AluJo SINE Alu 2 300 -2 373 124 25 0 chr4 40703616 40703698 -143584964 + L1P1 LINE L1 5653 5741 -414 2268 88 0 26 chr4 40703698 40704004 -143584658 - AluSg1 SINE Alu -9 300 3 2139 135 0 0 chr4 40704005 40704308 -143584354 - AluSx SINE Alu -9 303 1 28 95 0 0 chr4 40704553 40704637 -143584025 + AT_rich Low_complexity Low_complexity 1 84 0 2426 73 13 0 chr4 40704858 40705158 -143583504 + AluSp SINE Alu 1 304 -9 248 301 84 38 chr4 40706035 40706274 -143582388 + MARNA DNA Mariner 307 556 -30 1231 187 0 0 chr4 40707252 40707461 -143581201 + AluJo SINE Alu 90 298 -14 2604 77 50 79 chr4 40707775 40708140 -143580522 + MLT2A1 LTR ERVL 1 375 -69 315 0 0 0 chr4 40708140 40708175 -143580487 + (TA)n Simple_repeat Simple_repeat 1 35 0 2604 77 50 79 chr4 40708175 40708225 -143580437 + MLT2A1 LTR ERVL 375 404 -40 180 0 0 0 chr4 40708225 40708245 -143580417 + (TG)n Simple_repeat Simple_repeat 2 21 0 2604 77 50 79 chr4 40708245 40708285 -143580377 + MLT2A1 LTR ERVL 404 444 0 931 220 0 0 chr4 40708355 40708528 -143580134 - AluJb SINE Alu -7 305 133 1348 200 4 8 chr4 40708651 40708901 -143579761 + AluJb SINE Alu 50 298 -14 413 136 0 45 chr4 40708902 40708990 -143579672 - Tigger3(Golem) DNA MER2_type -669 2360 2277 353 200 0 148 chr4 40708981 40709023 -143579639 - Tigger3(Golem) DNA MER2_type -2921 108 61 * 688 113 19 0 chr4 40709023 40709129 -143579533 - L1PA7 LINE L1 0 6154 6047 353 200 0 148 chr4 40709129 40709201 -143579461 - Tigger3(Golem) DNA MER2_type -2968 61 11 1617 137 4 4 chr4 40709234 40709468 -143579194 + AluSx SINE Alu 3 236 -76 958 195 61 17 chr4 40709469 40709517 -143579145 + AluJo SINE Alu 60 104 -208 2059 149 7 0 chr4 40709517 40709818 -143578844 - AluSx SINE Alu -9 303 1 958 195 61 17 chr4 40709818 40710000 -143578662 + AluJo SINE Alu 104 300 -12 373 284 78 0 chr4 40711518 40711659 -143577003 + MER58A DNA MER1_type 42 193 -31 1704 190 0 16 chr4 40711683 40711994 -143576668 + AluJb SINE Alu 1 306 -6 207 211 0 0 chr4 40713716 40713754 -143574908 + T-rich Low_complexity Low_complexity 1 38 0 1601 167 0 11 chr4 40713861 40714124 -143574538 - AluSx SINE Alu -52 260 1 582 310 84 10 chr4 40714896 40715099 -143573563 - MIR SINE MIR -21 241 24 22 88 0 0 chr4 40715220 40715277 -143573385 + AT_rich Low_complexity Low_complexity 1 57 0 2417 45 21 0 chr4 40715640 40715930 -143572732 - AluY SINE Alu -15 296 1 653 173 0 18 chr4 40715996 40716106 -143572556 - FLAM_A SINE Alu -14 128 21 500 155 0 0 chr4 40716315 40716399 -143572263 + AluJ/FLAM SINE Alu 1 84 -228 465 257 65 65 chr4 40716494 40716574 -143572088 + HAL1 LINE L1 759 838 -1669 2279 111 0 0 chr4 40716574 40716880 -143571782 + AluSx SINE Alu 1 306 -6 465 257 65 65 chr4 40716880 40717060 -143571602 + HAL1 LINE L1 837 1019 -1488 316 235 17 9 chr4 40717075 40717190 -143571472 + GA-rich Low_complexity Low_complexity 2 117 0 201 152 0 0 chr4 40717229 40717262 -143571400 + A-rich Low_complexity Low_complexity 2 34 0 284 233 44 0 chr4 40717298 40717388 -143571274 + HAL1 LINE L1 1163 1256 -1251 1997 123 0 27 chr4 40717388 40717681 -143570981 + AluJb SINE Alu 14 298 -14 649 244 0 0 chr4 40717933 40718056 -143570606 + FLAM_A SINE Alu 1 123 -10 201 158 0 0 chr4 40718214 40718252 -143570410 + A-rich Low_complexity Low_complexity 1 38 0 2680 42 0 0 chr4 40718872 40719181 -143569481 - AluY SINE Alu -1 310 2 1404 167 7 57 chr4 40720038 40720393 -143568269 + AluJb SINE Alu 1 340 0 1688 168 7 23 chr4 40720408 40720717 -143567945 - AluSx SINE Alu -4 308 5 296 230 92 35 chr4 40721235 40721322 -143567340 + AluJo SINE Alu 122 213 -89 805 178 0 0 chr4 40722011 40722146 -143566516 + AluJo SINE Alu 3 137 -175 1489 196 21 14 chr4 40722147 40722433 -143566229 + AluJo SINE Alu 4 291 -21 1156 121 0 6 chr4 40722543 40722708 -143565954 + AluSg/x SINE Alu 133 296 -14 2491 59 0 7 chr4 40722847 40723151 -143565511 + AluY SINE Alu 1 302 -9 1858 137 31 7 chr4 40724381 40724673 -143563989 - AluSx SINE Alu -13 299 1 2169 110 10 3 chr4 40725453 40725753 -143562909 - AluSg SINE Alu -8 302 1 1749 178 3 20 chr4 40726335 40726633 -143562029 - AluJo SINE Alu -19 293 1 1954 152 0 29 chr4 40726636 40726951 -143561711 - AluJb SINE Alu -6 306 1 1085 174 181 15 chr4 40727244 40727503 -143561159 + AluJo SINE Alu 1 302 0 308 204 0 0 chr4 40727505 40727559 -143561103 + AluJo/FRAM SINE Alu 178 231 -71 2134 132 7 0 chr4 40727875 40728179 -143560483 + AluSp SINE Alu 1 306 -7 22 0 0 0 chr4 40728296 40728318 -143560344 + AT_rich Low_complexity Low_complexity 1 22 0 29 28 0 0 chr4 40728536 40728572 -143560090 + AT_rich Low_complexity Low_complexity 1 36 0 1397 154 0 21 chr4 40728956 40729189 -143559473 + AluJo SINE Alu 76 303 -9 1996 135 4 0 chr4 40729559 40729840 -143558822 + AluSx SINE Alu 1 282 -30 2324 83 0 0 chr4 40730351 40730640 -143558022 + AluY SINE Alu 1 289 -22 25 0 0 0 chr4 40730916 40730941 -143557721 + AT_rich Low_complexity Low_complexity 1 25 0 28 0 0 0 chr4 40731945 40731973 -143556689 + AT_rich Low_complexity Low_complexity 1 28 0 1160 227 0 4 chr4 40732108 40732333 -143556329 - MER58A DNA MER1_type 0 224 1 1703 160 0 56 chr4 40732441 40732747 -143555915 + AluJo SINE Alu 1 289 -23 21 36 0 0 chr4 40732871 40732899 -143555763 + AT_rich Low_complexity Low_complexity 1 28 0 207 261 0 0 chr4 40733741 40733787 -143554875 + GA-rich Low_complexity Low_complexity 2 47 0 2097 132 3 6 chr4 40734036 40734347 -143554315 + AluSx SINE Alu 1 310 -2 1047 146 87 11 chr4 40734443 40734628 -143554034 + AluJb SINE Alu 87 285 -27 312 27 0 0 chr4 40734628 40734665 -143553997 + (CA)n Simple_repeat Simple_repeat 2 38 0 395 193 26 79 chr4 40735239 40735353 -143553309 + MLT1H LTR MaLR 442 549 0 255 259 0 0 chr4 40735560 40735618 -143553044 + Charlie5 DNA MER1_type 2 59 -2553 473 127 36 27 chr4 40735627 40735737 -143552925 + Charlie5 DNA MER1_type 2430 2540 -72 2163 137 0 0 chr4 40735819 40736119 -143552543 + AluSx SINE Alu 1 300 -12 180 97 0 0 chr4 40736159 40736190 -143552472 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 283 300 20 60 chr4 40736252 40736352 -143552310 + MIR3 SINE MIR 90 185 -23 735 183 9 113 chr4 40736939 40737026 -143551636 - MER2 DNA MER2_type -138 207 112 2032 146 10 0 chr4 40737026 40737327 -143551335 + AluSx SINE Alu 1 304 -8 735 183 9 113 chr4 40737327 40737468 -143551194 - MER2 DNA MER2_type -233 112 3 1756 131 25 135 chr4 40737544 40737707 -143550955 - LTR24C LTR ERV1 0 635 456 1806 125 90 0 chr4 40737707 40737986 -143550676 - AluSx SINE Alu -8 304 1 2141 106 3 3 chr4 40737989 40738282 -143550380 - AluSx SINE Alu -19 293 1 783 181 0 15 chr4 40738284 40738417 -143550245 - AluJo/FLAM SINE Alu -171 131 1 1756 131 25 135 chr4 40738417 40738562 -143550100 - LTR24C LTR ERV1 -182 453 294 2519 65 0 10 chr4 40738562 40738872 -143549790 - AluY SINE Alu -4 307 1 1984 161 0 3 chr4 40738874 40739178 -143549484 - AluSx SINE Alu -9 303 1 1756 131 25 135 chr4 40739178 40739346 -143549316 - LTR24C LTR ERV1 -342 293 202 367 94 0 0 chr4 40739448 40739507 -143549155 + AluSq/x SINE Alu 75 124 -178 1990 131 0 20 chr4 40739512 40739810 -143548852 - AluSx SINE Alu -16 296 5 1539 188 37 24 chr4 40739818 40740116 -143548546 - AluJb SINE Alu -10 302 1 892 209 74 81 chr4 40740407 40740543 -143548119 + HsTC2 DNA Tc2 1234 1369 -529 2425 70 3 0 chr4 40740543 40740844 -143547818 + AluY SINE Alu 2 303 -8 892 209 74 81 chr4 40740844 40740973 -143547689 + HsTC2 DNA Tc2 1369 1497 -401 1893 134 3 13 chr4 40740973 40741271 -143547391 + AluSx SINE Alu 3 297 -15 892 209 74 81 chr4 40741271 40741434 -143547228 + HsTC2 DNA Tc2 1497 1836 -62 699 328 49 56 chr4 40741438 40741651 -143547011 + ERVL LTR ERVL 4559 4772 -992 2186 128 0 0 chr4 40741651 40741949 -143546713 - AluSq SINE Alu -10 303 6 699 328 49 56 chr4 40741949 40742309 -143546353 + ERVL LTR ERVL 4772 5128 -636 306 189 9 90 chr4 40742313 40742376 -143546286 - MER5C DNA MER1_type 0 324 272 1830 171 3 0 chr4 40742376 40742662 -143546000 + AluJb SINE Alu 3 289 -23 306 189 9 90 chr4 40742662 40742709 -143545953 - MER5C DNA MER1_type -52 272 223 247 222 63 16 chr4 40742745 40742808 -143545854 - MER5C DNA MER1_type -210 114 49 1787 140 0 67 chr4 40742986 40743301 -143545361 + AluJo SINE Alu 1 294 -18 1719 105 0 16 chr4 40743303 40743550 -143545112 - AluSx SINE Alu -69 243 1 201 39 0 0 chr4 40743600 40743626 -143545036 + (A)n Simple_repeat Simple_repeat 1 26 0 1518 169 17 30 chr4 40743686 40743982 -143544680 + AluJb SINE Alu 1 292 -20 318 132 91 141 chr4 40744194 40744248 -143544414 + L1MC1 LINE L1 6138 6193 -140 2043 130 10 7 chr4 40744248 40744555 -143544107 + AluSx SINE Alu 1 308 -4 318 132 91 141 chr4 40744555 40744621 -143544041 + L1MC1 LINE L1 6193 6252 -81 486 149 11 11 chr4 40744655 40744749 -143543913 + L1MC1 LINE L1 6240 6333 0 2034 128 3 22 chr4 40744762 40745074 -143543588 + AluSx SINE Alu 1 306 -6 2032 139 7 7 chr4 40745137 40745438 -143543224 + AluSx SINE Alu 1 301 -11 1325 157 0 24 chr4 40745763 40745809 -143542853 + AluSg/x SINE Alu 88 134 -176 2109 114 0 0 chr4 40745809 40746148 -143542514 + AluSx SINE Alu 2 340 0 1325 157 0 24 chr4 40746148 40746310 -143542352 + AluSg/x SINE Alu 134 292 -18 2360 109 0 0 chr4 40746393 40746706 -143541956 + AluSq SINE Alu 1 313 0 1829 158 0 20 chr4 40746789 40747081 -143541581 + AluJb SINE Alu 1 286 -26 32 26 0 0 chr4 40747081 40747120 -143541542 + AT_rich Low_complexity Low_complexity 1 39 0 440 329 13 26 chr4 40747176 40747328 -143541334 - L2 LINE L2 -219 3053 2904 197 304 57 108 chr4 40747376 40747534 -143541128 - L2 LINE L2 -643 2671 2522 1928 144 40 0 chr4 40747534 40747832 -143540830 + AluSx SINE Alu 1 310 -2 1334 175 52 4 chr4 40747849 40748154 -143540508 + AluJo SINE Alu 1 318 0 1273 99 0 0 chr4 40748155 40748317 -143540345 + AluSq SINE Alu 1 162 -151 2097 129 3 10 chr4 40748421 40748716 -143539946 + AluSx SINE Alu 1 293 -19 940 194 90 5 chr4 40748804 40749103 -143539559 + L1ME1 LINE L1 4976 5330 -816 1809 158 10 17 chr4 40749107 40749404 -143539258 + AluJo SINE Alu 1 295 -17 2235 131 3 0 chr4 40749406 40749712 -143538950 + AluSx SINE Alu 1 307 -5 283 247 24 0 chr4 40749818 40749903 -143538759 - L1MD2 LINE L1 -417 5942 5856 955 132 0 0 chr4 40750008 40750144 -143538518 + AluSq SINE Alu 146 281 -32 294 95 0 0 chr4 40750144 40750186 -143538476 + (GGAA)n Simple_repeat Simple_repeat 3 44 0 1598 109 126 18 chr4 40750186 40750471 -143538191 + LTR9 LTR ERV1 79 394 -218 558 119 0 0 chr4 40750471 40750555 -143538107 + MER30 DNA MER1_type 114 197 -33 698 197 0 0 chr4 40750787 40750904 -143537758 + AluJb SINE Alu 3 119 -193 259 146 0 0 chr4 40750919 40750960 -143537702 - L1MEd LINE L1 -5987 132 92 2009 152 7 3 chr4 40750963 40751266 -143537396 + AluSx SINE Alu 1 304 -8 1166 153 0 97 chr4 40751386 40751448 -143537214 + AluJb SINE Alu 86 152 -160 2372 95 0 0 chr4 40751448 40751753 -143536909 + AluSq SINE Alu 1 305 -8 1608 60 120 0 chr4 40751759 40751975 -143536687 + AluSc SINE Alu 54 295 -14 1166 153 0 97 chr4 40751975 40752133 -143536529 + AluJb SINE Alu 157 291 -21 930 170 64 9 chr4 40752836 40753047 -143535615 + L1ME1 LINE L1 5661 5873 -293 1693 112 22 11 chr4 40753047 40753324 -143535338 - AluSx SINE Alu -10 302 23 472 218 200 24 chr4 40753455 40753620 -143535042 - L2 LINE L2 0 3313 3120 526 111 0 0 chr4 40753643 40753715 -143534947 - AluS SINE Alu -14 297 226 887 96 0 0 chr4 40753717 40753832 -143534830 - AluSg SINE Alu -195 115 1 340 246 51 58 chr4 40754315 40754453 -143534209 + MIR3 SINE MIR 66 202 -6 1495 166 95 11 chr4 40754472 40754755 -143533907 - AluJb SINE Alu -5 307 1 2139 91 13 7 chr4 40754828 40755137 -143533525 - AluY SINE Alu 0 311 1 1811 138 10 10 chr4 40755150 40755439 -143533223 - AluSx SINE Alu -21 291 3 2291 76 0 0 chr4 40755921 40756237 -143532425 + AluSg SINE Alu 1 310 0 596 146 87 0 chr4 40756239 40756342 -143532320 - AluJo/FLAM SINE Alu -196 116 5 23 33 0 0 chr4 40756381 40756411 -143532251 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr4 40756696 40756719 -143531943 + AT_rich Low_complexity Low_complexity 1 23 0 2272 48 17 7 chr4 40757525 40757818 -143530844 + AluY SINE Alu 1 296 -15 1287 99 16 0 chr4 40758218 40758409 -143530253 - AluSp SINE Alu -5 308 115 488 227 27 8 chr4 40758509 40758693 -143529969 + L1PA15 LINE L1 5958 6143 -22 2242 78 0 3 chr4 40758693 40759013 -143529649 - AluY SINE Alu 0 319 1 488 227 27 8 chr4 40759013 40759037 -143529625 + L1PA15 LINE L1 6143 6165 0 2173 114 0 0 chr4 40759263 40759571 -143529091 - AluSg SINE Alu -2 308 1 1442 231 96 19 chr4 40759595 40760002 -143528660 - MLT1C LTR MaLR 0 467 24 474 18 0 0 chr4 40760002 40760057 -143528605 + (TG)n Simple_repeat Simple_repeat 2 56 0 1442 231 96 19 chr4 40760057 40760078 -143528584 - MLT1C LTR MaLR -443 24 6 1686 124 0 19 chr4 40760221 40760387 -143528275 - AluSg SINE Alu -13 297 136 2238 86 3 3 chr4 40760387 40760689 -143527973 - AluY SINE Alu -8 303 2 1686 124 0 19 chr4 40760689 40760787 -143527875 - AluSg SINE Alu -174 136 38 342 187 133 0 chr4 40760790 40760865 -143527797 + AluSg/x SINE Alu 86 170 -132 806 135 24 0 chr4 40760978 40761104 -143527558 + AluSc SINE Alu 119 247 -62 208 323 55 55 chr4 40761353 40761480 -143527182 + L2 LINE L2 2509 2635 -679 448 183 34 33 chr4 40761480 40761597 -143527065 - MER20 DNA MER1_type -137 82 1 207 0 0 0 chr4 40763419 40763442 -143525220 + (CCG)n Simple_repeat Simple_repeat 2 24 0 276 286 12 24 chr4 40764287 40764371 -143524291 + MER5A DNA MER1_type 2 84 -105 237 188 0 50 chr4 40764408 40764488 -143524174 + A-rich Low_complexity Low_complexity 1 76 0 207 227 0 0 chr4 40764489 40764533 -143524129 + MER5B DNA MER1_type 89 132 -46 2366 53 0 23 chr4 40765156 40765460 -143523202 - AluY SINE Alu -14 297 1 1681 112 0 23 chr4 40765623 40765882 -143522780 - AluSq SINE Alu -60 253 1 3249 119 57 16 chr4 40765902 40766408 -143522254 - MER1A DNA MER1_type 0 527 1 836 170 0 21 chr4 40766548 40766689 -143521973 - AluJo SINE Alu -173 139 2 2306 91 0 7 chr4 40767323 40767632 -143521030 - AluSx SINE Alu -5 307 1 2056 96 7 3 chr4 40767655 40767948 -143520714 - AluSq SINE Alu -19 294 1 1875 139 0 29 chr4 40767948 40768263 -143520399 - AluSx SINE Alu -3 309 3 2278 90 0 13 chr4 40768296 40768470 -143520192 - AluSq SINE Alu -6 307 137 2323 58 37 0 chr4 40768470 40768765 -143519897 - AluY SINE Alu -4 307 2 2278 90 0 13 chr4 40768765 40768901 -143519761 - AluSq SINE Alu -176 137 1 276 289 230 37 chr4 40768955 40769090 -143519572 + MIR SINE MIR 10 170 -92 2054 88 7 7 chr4 40769091 40769405 -143519257 - AluSq SINE Alu 0 314 1 1903 147 0 0 chr4 40769407 40769700 -143518962 - AluJb SINE Alu -19 293 1 1792 79 0 4 chr4 40769929 40770169 -143518493 - AluY SINE Alu 0 311 73 1018 212 0 14 chr4 40770270 40770492 -143518170 - AluJb SINE Alu -85 227 9 771 200 18 36 chr4 40770506 40770671 -143517991 - AluJb SINE Alu -17 295 134 1067 125 12 0 chr4 40770716 40770876 -143517786 + AluSg/x SINE Alu 137 298 -14 231 182 0 0 chr4 40771359 40771392 -143517270 + Alu SINE Alu 1 33 -269 293 230 14 27 chr4 40771392 40771466 -143517196 + MIR SINE MIR 188 260 -2 2058 133 0 3 chr4 40771466 40771775 -143516887 - AluSg SINE Alu -2 308 1 24 32 0 0 chr4 40771874 40771905 -143516757 + AT_rich Low_complexity Low_complexity 1 31 0 1945 151 0 0 chr4 40772055 40772354 -143516308 - AluSq SINE Alu -14 299 1 2018 95 0 7 chr4 40772435 40772745 -143515917 - AluSg SINE Alu 0 308 1 764 146 57 0 chr4 40772748 40772871 -143515791 - AluSq/x SINE Alu -181 131 2 2176 87 7 0 chr4 40773357 40773645 -143515017 - AluSq SINE Alu -13 300 11 1579 117 4 16 chr4 40773807 40773877 -143514785 + AluSg/x SINE Alu 65 134 -176 1932 131 0 13 chr4 40773877 40774189 -143514473 + AluSg SINE Alu 1 308 -2 1579 117 4 16 chr4 40774189 40774367 -143514295 + AluSg/x SINE Alu 134 310 0 1221 151 131 19 chr4 40774619 40774764 -143513898 - AluJo SINE Alu -16 296 169 2081 103 7 3 chr4 40774764 40775056 -143513606 - AluSc SINE Alu -16 293 1 1221 151 131 19 chr4 40775056 40775169 -143513493 - AluJo SINE Alu -143 169 9 226 125 0 25 chr4 40775234 40775274 -143513388 - U3 snRNA snRNA -178 39 1 526 136 0 0 chr4 40775357 40775445 -143513217 - AluS SINE Alu -2 310 223 1533 145 60 18 chr4 40775568 40775686 -143512976 + AluSg SINE Alu 1 113 -197 2412 63 0 0 chr4 40775686 40775989 -143512673 + AluY SINE Alu 1 303 -8 1533 145 60 18 chr4 40775989 40776152 -143512510 + AluSg SINE Alu 113 294 -16 23 0 0 0 chr4 40776154 40776177 -143512485 + AT_rich Low_complexity Low_complexity 1 23 0 1598 113 9 0 chr4 40777564 40777820 -143510842 - AluSx SINE Alu 0 315 58 365 260 0 48 chr4 40778036 40778140 -143510522 + MER5A DNA MER1_type 21 119 -70 1683 154 31 0 chr4 40778163 40778449 -143510213 - AluSx SINE Alu -12 300 6 310 294 138 46 chr4 40778491 40778703 -143509959 + MIR SINE MIR 32 259 -3 338 240 110 10 chr4 40778775 40778875 -143509787 - LTR33 LTR ERVL -8 513 404 2294 57 0 10 chr4 40778890 40779187 -143509475 + AluY SINE Alu 1 294 -17 1256 112 0 21 chr4 40779492 40779680 -143508982 + AluJb SINE Alu 1 184 -128 23 0 0 0 chr4 40779702 40779725 -143508937 + AT_rich Low_complexity Low_complexity 1 23 0 226 236 46 75 chr4 40779730 40779904 -143508758 + L1ME4a LINE L1 5931 6099 -22 596 311 32 44 chr4 40779913 40779968 -143508694 - MIR SINE MIR -15 247 193 1718 135 0 83 chr4 40779968 40780157 -143508505 - AluSx SINE Alu -14 298 146 1902 117 0 58 chr4 40780157 40780483 -143508179 - AluSx SINE Alu -5 307 1 1718 135 0 83 chr4 40780483 40780618 -143508044 - AluSx SINE Alu -166 146 1 596 311 32 44 chr4 40780618 40780810 -143507852 - MIR SINE MIR -69 193 3 2348 75 0 3 chr4 40780836 40781142 -143507520 + AluY SINE Alu 1 305 -6 772 209 68 0 chr4 40781171 40781334 -143507328 - AluJb SINE Alu -5 307 134 1756 182 16 3 chr4 40781335 40781643 -143507019 - AluJo SINE Alu 0 312 1 1216 154 68 45 chr4 40781817 40782109 -143506553 + AluSx SINE Alu 1 299 -13 209 257 29 29 chr4 40782197 40782302 -143506360 + (TATG)n Simple_repeat Simple_repeat 2 106 0 1200 120 0 0 chr4 40782308 40782483 -143506179 - AluSg/x SINE Alu -18 294 120 388 163 0 50 chr4 40782489 40782569 -143506093 - AluS SINE Alu 0 302 227 2228 82 3 3 chr4 40782591 40782883 -143505779 + AluSg SINE Alu 5 296 -14 2110 113 0 7 chr4 40782895 40783196 -143505466 + AluSg SINE Alu 1 299 -11 1121 171 3 147 chr4 40783201 40783377 -143505285 + AluJb SINE Alu 5 112 -190 1997 127 3 0 chr4 40783377 40783668 -143504994 + AluSp SINE Alu 4 295 -18 1121 171 3 147 chr4 40783668 40783824 -143504838 + AluJb SINE Alu 112 289 -13 945 114 14 0 chr4 40783831 40783971 -143504691 + AluSq/x SINE Alu 1 142 -171 311 195 13 52 chr4 40784101 40784178 -143504484 + L1MC4 LINE L1 6648 6721 -1321 869 202 52 0 chr4 40784638 40784811 -143503851 - AluJb SINE Alu -13 299 118 819 164 0 0 chr4 40785042 40785170 -143503492 + FLAM_C SINE Alu 5 132 -1 1621 129 111 7 chr4 40785233 40785512 -143503150 + AluSg SINE Alu 1 308 -2 1524 183 3 13 chr4 40785637 40785938 -143502724 + AluJb SINE Alu 11 308 -4 1484 158 79 0 chr4 40786018 40786297 -143502365 + AluSx SINE Alu 1 301 -11 366 23 0 0 chr4 40786298 40786341 -143502321 + (CA)n Simple_repeat Simple_repeat 2 44 0 710 82 0 21 chr4 40786472 40786569 -143502093 - U6 snRNA snRNA 0 107 13 2210 111 0 0 chr4 40786701 40786999 -143501663 + AluSx SINE Alu 1 298 -14 1818 134 53 0 chr4 40787007 40787291 -143501371 + AluSx SINE Alu 1 299 -13 1986 88 29 0 chr4 40787667 40787939 -143500723 + AluY SINE Alu 1 280 -31 1045 167 0 0 chr4 40787955 40788129 -143500533 + AluSg/x SINE Alu 132 305 -7 911 140 37 30 chr4 40788191 40788318 -143500344 + AluSx SINE Alu 11 141 -171 1938 131 0 10 chr4 40788318 40788615 -143500047 + AluSq SINE Alu 1 294 -19 911 140 37 30 chr4 40788615 40788651 -143500011 + AluSx SINE Alu 141 175 -137 1416 184 50 14 chr4 40788708 40788985 -143499677 + AluJb SINE Alu 1 287 -25 515 203 8 17 chr4 40789058 40789176 -143499486 - AluSc SINE Alu -16 293 177 466 218 76 76 chr4 40789370 40789567 -143499095 + L1MC4a LINE L1 6477 6673 -1135 1319 197 52 21 chr4 40789570 40789859 -143498803 + AluJo SINE Alu 2 299 -3 1330 110 237 0 chr4 40789864 40790121 -143498541 + AluSg SINE Alu 3 313 0 1273 276 131 28 chr4 40790168 40790618 -143498044 + MLT1H1 LTR MaLR 1 510 -45 2463 117 26 78 chr4 40790618 40791115 -143497547 + L1MB3 LINE L1 5710 6180 -3 1273 276 131 28 chr4 40791115 40791167 -143497495 + MLT1H1 LTR MaLR 510 555 0 2117 113 10 3 chr4 40791863 40792165 -143496497 + AluSq SINE Alu 1 304 -9 2022 138 3 3 chr4 40792170 40792475 -143496187 + AluSx SINE Alu 1 305 -7 2172 110 0 3 chr4 40792514 40792824 -143495838 + AluSg SINE Alu 2 310 0 1295 97 11 5 chr4 40792825 40793010 -143495652 + AluSq SINE Alu 1 186 -127 355 125 0 36 chr4 40793010 40793093 -143495569 + AluSc SINE Alu 228 308 0 740 179 0 8 chr4 40793266 40793389 -143495273 - AluJb SINE Alu -178 134 13 488 47 0 0 chr4 40793492 40793556 -143495106 - AluSp/q SINE Alu -12 301 238 1389 103 5 0 chr4 40793581 40793775 -143494887 - AluSp SINE Alu -14 299 105 433 81 48 0 chr4 40793875 40793937 -143494725 - L1MC/D LINE L1 -420 5822 5758 2181 117 0 0 chr4 40793953 40794252 -143494410 - AluSx SINE Alu -13 299 1 650 269 22 70 chr4 40794253 40794524 -143494138 - HAL1 LINE L1 -1614 893 636 1750 110 4 19 chr4 40794683 40794947 -143493715 - AluSg SINE Alu -8 302 43 195 100 0 0 chr4 40794972 40795002 -143493660 + (A)n Simple_repeat Simple_repeat 1 30 0 1967 123 3 10 chr4 40795028 40795329 -143493333 - AluSx SINE Alu -13 299 1 849 166 3 180 chr4 40795930 40796069 -143492593 - MER96B DNA MER1_type? -183 234 72 2290 80 0 7 chr4 40796069 40796370 -143492292 + AluSp SINE Alu 1 299 -14 849 166 3 180 chr4 40796370 40796390 -143492272 - MER96B DNA MER1_type? -345 72 50 1824 132 0 40 chr4 40796390 40796525 -143492137 + AluSq SINE Alu 1 140 -173 2149 58 0 0 chr4 40796525 40796785 -143491877 + AluY SINE Alu 40 299 -12 1824 132 0 40 chr4 40796785 40796952 -143491710 + AluSq SINE Alu 140 291 -22 849 166 3 180 chr4 40796952 40797075 -143491587 - MER96B DNA MER1_type? -367 50 1 180 0 0 0 chr4 40797084 40797104 -143491558 + (T)n Simple_repeat Simple_repeat 1 20 0 289 220 0 0 chr4 40797211 40797270 -143491392 - MER2 DNA MER2_type -9 336 278 2023 121 3 10 chr4 40797270 40797584 -143491078 + AluSp SINE Alu 1 312 -1 1797 136 0 7 chr4 40797590 40797876 -143490786 + AluJb SINE Alu 5 288 -24 2401 68 0 0 chr4 40797906 40798213 -143490449 + AluY SINE Alu 1 307 -4 1746 79 0 0 chr4 40798245 40798474 -143490188 + AluY SINE Alu 1 229 -82 484 111 0 0 chr4 40798574 40798637 -143490025 - AluY SINE Alu -30 281 219 1818 147 0 0 chr4 40798693 40798972 -143489690 - AluSx SINE Alu -33 279 1 23 54 0 0 chr4 40799236 40799273 -143489389 + AT_rich Low_complexity Low_complexity 1 37 0 1932 111 17 0 chr4 40799653 40799942 -143488720 + AluSx SINE Alu 11 304 -8 718 247 7 0 chr4 40799943 40800097 -143488565 - MER3 DNA MER1_type -54 155 1 2076 126 0 7 chr4 40800133 40800443 -143488219 - AluSx SINE Alu -2 310 3 906 66 0 8 chr4 40800589 40800711 -143487951 - AluSc SINE Alu -188 121 1 947 174 0 0 chr4 40800820 40801011 -143487651 - AluSg/x SINE Alu 0 322 132 2152 96 0 3 chr4 40801011 40801303 -143487359 - AluSx SINE Alu -21 291 1 2051 118 7 0 chr4 40801314 40801611 -143487051 - AluSg SINE Alu -11 299 1 1984 130 3 0 chr4 40801613 40801906 -143486756 - AluSx SINE Alu -18 294 1 324 0 0 0 chr4 40802057 40802093 -143486569 + (CAAA)n Simple_repeat Simple_repeat 4 39 0 337 178 11 67 chr4 40802094 40802184 -143486478 - MLT1E1 LTR MaLR -402 252 168 1039 181 5 0 chr4 40802350 40802538 -143486124 - AluJ SINE Alu -19 293 105 236 200 53 13 chr4 40802611 40802686 -143485976 + L1MC4 LINE L1 6628 6705 -1337 417 323 0 0 chr4 40802693 40802866 -143485796 + (TA)n Simple_repeat Simple_repeat 1 271 -36 309 313 0 42 chr4 40802866 40802962 -143485700 - L1MC4 LINE L1 -1337 6705 6614 417 323 0 0 chr4 40802962 40803000 -143485662 + (TA)n Simple_repeat Simple_repeat 270 307 0 238 152 43 0 chr4 40803000 40803046 -143485616 - L1MC3 LINE L1 -1139 6646 6599 2195 96 3 7 chr4 40803050 40803342 -143485320 - AluSg SINE Alu -19 291 1 768 125 0 17 chr4 40803367 40803487 -143485175 - AluJ SINE Alu -184 118 1 2252 148 80 48 chr4 40803488 40803926 -143484736 + MLT2B3 LTR ERVL 103 554 0 333 316 70 13 chr4 40803927 40804085 -143484577 - L2 LINE L2 -1324 1990 1824 3532 194 42 57 chr4 40804092 40804225 -143484437 + L1MC4a LINE L1 6553 6687 -1121 2002 132 42 0 chr4 40804225 40804513 -143484149 + AluSx SINE Alu 1 300 -12 1623 113 0 4 chr4 40804517 40804748 -143483914 + AluSq SINE Alu 81 310 -3 3532 194 42 57 chr4 40804748 40804794 -143483868 + L1MC4a LINE L1 6690 6735 -1073 2013 130 3 59 chr4 40804794 40805118 -143483544 + AluJb SINE Alu 1 306 -6 3532 194 42 57 chr4 40805118 40805317 -143483345 + L1MC4a LINE L1 6735 6936 -872 1736 184 7 7 chr4 40805317 40805627 -143483035 + AluJo SINE Alu 1 310 -2 3532 194 42 57 chr4 40805627 40805819 -143482843 + L1MC4a LINE L1 6936 7129 -679 2457 72 0 25 chr4 40805819 40806159 -143482503 - AluY SINE Alu 0 311 2 3532 194 42 57 chr4 40806159 40806300 -143482362 + L1MC4a LINE L1 7129 7271 -537 1745 172 7 10 chr4 40806300 40806603 -143482059 + AluJo SINE Alu 3 304 -8 3532 194 42 57 chr4 40806603 40806925 -143481737 + L1MC4a LINE L1 7271 7492 -316 1253 226 10 24 chr4 40806930 40807222 -143481440 + AluJo SINE Alu 6 293 -19 822 143 0 0 chr4 40807223 40807349 -143481313 + L1MD3 LINE L1 7657 7782 -213 1253 131 5 30 chr4 40807349 40807581 -143481081 + AluSg/x SINE Alu 94 312 0 2349 79 3 0 chr4 40807582 40807874 -143480788 + AluY SINE Alu 1 293 -18 1031 177 9 9 chr4 40807874 40808089 -143480573 + L1MD3 LINE L1 7775 7989 -6 2179 113 0 0 chr4 40808146 40808469 -143480193 + AluSx SINE Alu 1 323 0 264 216 81 0 chr4 40808729 40808803 -143479859 + MIR SINE MIR 74 153 -109 437 226 20 10 chr4 40808812 40808914 -143479748 + MLT1J1 LTR MaLR 1 103 -343 2353 104 0 0 chr4 40809218 40809516 -143479146 + AluSq SINE Alu 1 298 -15 310 209 191 35 chr4 40809519 40809634 -143479028 + FLAM_A SINE Alu 1 133 0 2359 110 0 0 chr4 40809674 40809982 -143478680 + AluSg SINE Alu 1 308 -2 1219 150 16 5 chr4 40810384 40810577 -143478085 - AluJb SINE Alu -13 299 105 2505 164 63 36 chr4 40810705 40810792 -143477870 + MER4E LTR ERV1 92 175 -604 2201 85 0 61 chr4 40810792 40810981 -143477681 - AluSc SINE Alu 0 309 147 2205 102 3 0 chr4 40810981 40811275 -143477387 - AluSg SINE Alu -15 295 1 2201 85 0 61 chr4 40811275 40811414 -143477248 - AluSc SINE Alu -162 147 1 2505 164 63 36 chr4 40811414 40811821 -143476841 + MER4E LTR ERV1 175 599 -180 1002 154 59 0 chr4 40811825 40811994 -143476668 - AluSg/x SINE Alu -2 310 132 1178 146 0 0 chr4 40812172 40812350 -143476312 - AluSg/x SINE Alu 0 310 133 2257 109 0 0 chr4 40812351 40812644 -143476018 - AluSx SINE Alu -19 293 1 832 117 0 29 chr4 40813887 40814024 -143474638 + FLAM_C SINE Alu 1 133 0 1154 153 0 0 chr4 40814033 40814209 -143474453 - AluSg/x SINE Alu -3 307 132 1951 158 0 0 chr4 40814236 40814540 -143474122 + AluJb SINE Alu 1 304 -8 213 367 27 27 chr4 40814550 40814697 -143473965 - MIR SINE MIR -113 149 3 1726 179 20 3 chr4 40815022 40815319 -143473343 + AluJo SINE Alu 1 302 -10 28 0 0 0 chr4 40815404 40815432 -143473230 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr4 40815531 40815552 -143473110 + AT_rich Low_complexity Low_complexity 1 21 0 195 129 0 0 chr4 40815668 40815699 -143472963 + (T)n Simple_repeat Simple_repeat 1 31 0 2053 148 3 0 chr4 40816193 40816503 -143472159 + AluSx SINE Alu 1 311 -1 303 244 45 119 chr4 40816519 40816830 -143471832 - MLT1K LTR MaLR -12 576 289 665 157 104 0 chr4 40816886 40817001 -143471661 - FLAM_A SINE Alu -6 127 1 2035 117 0 64 chr4 40817039 40817365 -143471297 + AluSx SINE Alu 1 305 -7 2098 99 10 30 chr4 40817369 40817507 -143471155 + AluSx SINE Alu 1 140 -172 2184 90 25 0 chr4 40817507 40817814 -143470848 + AluSp SINE Alu 1 314 0 2098 99 10 30 chr4 40817814 40817976 -143470686 + AluSx SINE Alu 140 296 -16 1033 201 141 34 chr4 40817983 40818075 -143470587 + AluJo SINE Alu 6 87 -225 2310 100 7 0 chr4 40818075 40818375 -143470287 + AluSx SINE Alu 1 302 -10 1033 201 141 34 chr4 40818375 40818545 -143470117 + AluJo SINE Alu 87 296 -16 469 0 0 32 chr4 40818677 40818740 -143469922 + (TCCA)n Simple_repeat Simple_repeat 3 63 0 479 254 137 34 chr4 40818775 40819048 -143469614 - L1MC4a LINE L1 -394 5771 5652 322 240 23 31 chr4 40819019 40819148 -143469514 - L1MC4a LINE L1 -2427 5381 5254 * 1515 129 22 9 chr4 40819566 40819791 -143468871 + AluSx SINE Alu 37 264 -48 186 71 0 0 chr4 40819796 40819824 -143468838 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 2295 106 0 3 chr4 40820084 40820387 -143468275 + AluSx SINE Alu 1 302 -10 345 188 59 20 chr4 40820856 40820957 -143467705 - MER103 DNA DNA -8 158 54 1480 157 0 0 chr4 40821142 40821365 -143467297 - AluJb SINE Alu -4 308 86 1449 161 0 0 chr4 40821463 40821680 -143466982 - AluJb SINE Alu -11 301 85 220 248 101 0 chr4 40821761 40821888 -143466774 - MIR SINE MIR -27 235 86 2270 105 0 0 chr4 40822082 40822376 -143466286 - AluSg SINE Alu -16 294 1 2709 45 0 0 chr4 40822882 40823192 -143465470 - AluY SINE Alu -1 310 1 1821 134 11 4 chr4 40823449 40823724 -143464938 + AluSq SINE Alu 1 277 -36 264 59 0 0 chr4 40824859 40824893 -143463769 + (CCA)n Simple_repeat Simple_repeat 1 34 0 1839 155 3 0 chr4 40827975 40828271 -143460391 - AluJb SINE Alu -15 297 1 207 0 0 0 chr4 40828536 40828559 -143460103 + (TATG)n Simple_repeat Simple_repeat 2 24 0 1352 137 173 12 chr4 40828559 40828801 -143459861 - AluSg SINE Alu -18 282 1 379 299 111 0 chr4 40828939 40829083 -143459579 - MIR SINE MIR -36 226 67 894 129 0 15 chr4 40829150 40829282 -143459380 - FLAM_C SINE Alu 0 133 4 2125 126 0 0 chr4 40829402 40829696 -143458966 - AluSx SINE Alu -18 294 1 1827 179 0 7 chr4 40829754 40830055 -143458607 - AluJo SINE Alu -13 299 1 760 157 0 57 chr4 40830124 40830264 -143458398 - FLAM_C SINE Alu 0 133 2 1218 138 0 0 chr4 40830334 40830501 -143458161 - AluSg/x SINE Alu -26 286 120 2186 113 0 0 chr4 40830507 40830818 -143457844 - AluSq SINE Alu 0 312 2 2221 107 3 0 chr4 40830821 40831119 -143457543 - AluSq SINE Alu -14 299 1 190 28 28 56 chr4 40831163 40831199 -143457463 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1927 93 0 0 chr4 40831233 40831479 -143457183 - AluY SINE Alu -11 300 55 501 314 104 9 chr4 40831486 40831706 -143456956 + L2 LINE L2 2532 2772 -542 246 287 7 100 chr4 40831886 40832036 -143456626 + L2 LINE L2 2948 3083 -189 298 200 71 35 chr4 40832326 40832411 -143456251 - MLT1K LTR MaLR -2 586 499 2231 107 3 3 chr4 40832774 40832785 -143455877 - AluSq SINE Alu -13 300 290 194 0 0 37 chr4 40832785 40832812 -143455850 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 2231 107 3 3 chr4 40832812 40833100 -143455562 - AluSq SINE Alu -22 291 1 720 148 19 0 chr4 40833143 40833251 -143455411 - FLAM_C SINE Alu -32 111 2 2311 94 0 0 chr4 40833442 40833728 -143454934 - AluSg SINE Alu -23 287 2 2064 96 14 14 chr4 40833944 40834224 -143454438 - AluSg SINE Alu -30 280 1 266 343 50 0 chr4 40834445 40834544 -143454118 - L2 LINE L2 -965 2349 2246 2314 99 0 0 chr4 40835092 40835385 -143453277 - AluSc SINE Alu -16 293 1 2176 140 0 3 chr4 40835470 40835777 -143452885 - AluSx SINE Alu -6 306 1 4643 171 32 23 chr4 40835876 40836207 -143452455 - L1MB2 LINE L1 0 6171 5844 1897 149 30 17 chr4 40836207 40836509 -143452153 - AluJb SINE Alu -6 306 1 4643 171 32 23 chr4 40836509 40836844 -143451818 - L1MB2 LINE L1 -327 5844 5513 1945 138 65 0 chr4 40836844 40837134 -143451528 - AluSx SINE Alu -3 309 1 4643 171 32 23 chr4 40837134 40837960 -143450702 - L1MB2 LINE L1 -658 5513 4664 2416 84 6 3 chr4 40837991 40838302 -143450360 + AluSx SINE Alu 1 312 0 1667 124 98 4 chr4 40838310 40838576 -143450086 + AluSx SINE Alu 1 291 -21 1484 159 32 62 chr4 40838780 40839089 -143449573 + AluJo SINE Alu 1 300 -12 325 244 154 0 chr4 40839235 40839358 -143449304 - L1MC4 LINE L1 -26 8016 7875 1853 152 0 7 chr4 40839605 40839888 -143448774 - AluJb SINE Alu -14 298 18 1562 139 0 0 chr4 40839973 40840196 -143448466 - AluSg/x SINE Alu -6 304 82 460 274 35 27 chr4 40840397 40840717 -143447945 - L1MC5 LINE L1 -547 7495 7260 2352 96 3 0 chr4 40840717 40841020 -143447642 - AluSq SINE Alu -9 304 1 216 0 0 0 chr4 40841045 40841069 -143447593 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1087 135 0 6 chr4 40841074 40841230 -143447432 - AluSg/x SINE Alu -24 288 134 1731 150 0 66 chr4 40841230 40841397 -143447265 - AluSx SINE Alu -13 299 161 2392 90 0 0 chr4 40841397 40841697 -143446965 - AluSc SINE Alu -9 300 1 1731 150 0 66 chr4 40841697 40841849 -143446813 - AluSx SINE Alu -151 161 1 2048 109 29 29 chr4 40841862 40842174 -143446488 - AluSx SINE Alu 0 312 1 437 231 43 62 chr4 40842182 40842416 -143446246 - L1MC4 LINE L1 -728 7233 7028 21 0 0 0 chr4 40842509 40842530 -143446132 + AT_rich Low_complexity Low_complexity 1 21 0 1184 168 0 5 chr4 40842753 40842938 -143445724 - AluJo SINE Alu -19 293 110 416 226 11 11 chr4 40843050 40843143 -143445519 - AluJ/FLAM SINE Alu -209 93 1 482 73 0 0 chr4 40843174 40843242 -143445420 + Alu SINE Alu 241 308 -4 342 0 0 0 chr4 40843243 40843281 -143445381 + (TA)n Simple_repeat Simple_repeat 1 38 0 3708 218 81 25 chr4 40843281 40843868 -143444794 - L1M4 LINE L1 -2380 3766 3213 2400 110 0 0 chr4 40843868 40844178 -143444484 - AluSx SINE Alu -2 310 1 2254 122 0 0 chr4 40844183 40844478 -143444184 - AluSq SINE Alu -18 295 1 3708 218 81 25 chr4 40844478 40844650 -143444012 - L1M4 LINE L1 -2936 3210 3049 1729 149 0 58 chr4 40844650 40844808 -143443854 - AluSx SINE Alu -21 291 158 1730 132 62 7 chr4 40844808 40845130 -143443532 - AluSp SINE Alu 0 313 5 1729 149 0 58 chr4 40845130 40845280 -143443382 - AluSx SINE Alu -154 158 1 3708 218 81 25 chr4 40845280 40845778 -143442884 - L1M4 LINE L1 -3097 3049 2431 2165 119 13 0 chr4 40845778 40846080 -143442582 - AluSp SINE Alu 0 313 8 1263 160 91 9 chr4 40846080 40846311 -143442351 - AluSx SINE Alu -62 250 1 2221 96 14 3 chr4 40846325 40846616 -143442046 - AluSq SINE Alu -19 294 1 363 243 10 10 chr4 40846619 40846722 -143441940 - L1M4 LINE L1 -3710 2436 2334 439 125 14 0 chr4 40846731 40846803 -143441859 + MER3 DNA MER1_type 137 209 0 305 301 45 61 chr4 40846812 40847058 -143441604 - L2 LINE L2 -122 3191 2950 537 276 107 5 chr4 40847058 40847254 -143441408 - L2 LINE L2 -517 2797 2582 292 226 0 60 chr4 40847275 40847359 -143441303 - L2 LINE L2 -943 2371 2293 1810 252 152 9 chr4 40847384 40848185 -143440477 - L2 LINE L2 -92 3221 2292 1102 188 20 0 chr4 40849084 40849281 -143439381 - MER20 DNA MER1_type -17 202 2 409 289 0 9 chr4 40849284 40849398 -143439264 + L2 LINE L2 3191 3303 -10 380 263 206 31 chr4 40849452 40849612 -143439050 + MIR SINE MIR 2 189 -73 344 318 71 30 chr4 40850217 40850482 -143438180 - L1ME LINE L1 -375 5746 5458 2220 96 0 23 chr4 40850482 40850785 -143437877 - AluSq SINE Alu -17 296 1 344 318 71 30 chr4 40850785 40850915 -143437747 - L1ME LINE L1 -663 5458 5335 805 248 64 4 chr4 40851276 40851510 -143437152 - MIR SINE MIR -14 248 1 1696 168 32 23 chr4 40851598 40851907 -143436755 - AluJb SINE Alu 0 312 1 434 247 115 39 chr4 40851939 40852121 -143436541 + MIR SINE MIR 19 214 -48 2139 96 0 11 chr4 40852386 40852690 -143435972 - AluSx SINE Alu 0 306 6 29 0 0 0 chr4 40853149 40853178 -143435484 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4 40853236 40853257 -143435405 + AT_rich Low_complexity Low_complexity 1 21 0 205 152 0 0 chr4 40853273 40853306 -143435356 + (TTG)n Simple_repeat Simple_repeat 3 35 0 2472 45 7 0 chr4 40855195 40855487 -143433175 - AluY SINE Alu -17 294 1 2328 65 7 0 chr4 40856043 40856333 -143432329 - AluY SINE Alu -15 296 5 1484 138 9 5 chr4 40856561 40856785 -143431877 - AluSg/x SINE Alu -12 300 76 * 1942 159 0 10 chr4 40856784 40857086 -143431576 - AluJo SINE Alu -13 299 1 540 186 0 20 chr4 40857205 40857307 -143431355 + L2 LINE L2 3187 3286 -27 1049 216 39 0 chr4 40857563 40857771 -143430891 - AluJo SINE Alu -15 297 82 1740 139 0 0 chr4 40857777 40858029 -143430633 - AluSx SINE Alu -5 307 56 1595 158 88 0 chr4 40858337 40858609 -143430053 - AluJo SINE Alu -14 298 3 2148 119 3 0 chr4 40858625 40858919 -143429743 - AluSx SINE Alu -17 295 1 291 267 12 0 chr4 40858994 40859080 -143429582 + MIR SINE MIR 160 246 -16 1767 150 3 36 chr4 40859162 40859469 -143429193 - AluSx SINE Alu -15 297 1 2334 82 0 10 chr4 40859556 40859848 -143428814 - AluSg SINE Alu -20 290 2 2258 119 0 0 chr4 40860056 40860350 -143428312 - AluSc SINE Alu -15 294 1 532 252 39 0 chr4 40860524 40860651 -143428011 + MIR SINE MIR 60 191 -71 2205 129 0 0 chr4 40860671 40860966 -143427696 + AluSx SINE Alu 1 295 -17 2937 163 150 63 chr4 40861031 40861802 -143426860 - L1MB8 LINE L1 -2 6176 5327 2065 118 0 0 chr4 40861802 40862073 -143426589 - AluSx SINE Alu -41 271 1 2937 163 150 63 chr4 40862073 40862128 -143426534 - L1MB8 LINE L1 -851 5327 5278 698 220 67 0 chr4 40862334 40862543 -143426119 - L1MD3 LINE L1 -8 7987 7765 2235 104 0 0 chr4 40862567 40862854 -143425808 - AluSg SINE Alu -23 287 1 2068 146 0 0 chr4 40862857 40863151 -143425511 - AluSx SINE Alu -18 294 1 22 0 0 0 chr4 40863675 40863697 -143424965 + AT_rich Low_complexity Low_complexity 1 22 0 2153 113 3 3 chr4 40863939 40864239 -143424423 - AluSq SINE Alu -13 300 1 341 270 87 93 chr4 40864242 40864542 -143424120 - L1ME4a LINE L1 -222 5882 5585 841 119 0 0 chr4 40865010 40865128 -143423534 - FLAM_C SINE Alu -15 118 1 1268 177 50 3 chr4 40865523 40865805 -143422857 - L1MB7 LINE L1 -78 6106 5812 391 301 22 11 chr4 40865806 40865989 -143422673 - L1ME4a LINE L1 -2365 3764 3580 908 276 98 54 chr4 40866067 40866452 -143422210 - L1ME4a LINE L1 -2740 3389 2955 1781 180 3 0 chr4 40866452 40866746 -143421916 + AluJb SINE Alu 2 296 -16 908 276 98 54 chr4 40866746 40867054 -143421608 - L1ME4a LINE L1 -3174 2955 2662 630 288 63 14 chr4 40867114 40867527 -143421135 - L1ME4a LINE L1 -3583 2546 2114 22 80 0 0 chr4 40867661 40867711 -143420951 + AT_rich Low_complexity Low_complexity 1 50 0 601 276 50 35 chr4 40867883 40868522 -143420140 - L1MEd LINE L1 -4586 1724 1043 251 269 0 26 chr4 40868611 40868689 -143419973 + L1MEd LINE L1 279 354 -5765 307 322 116 0 chr4 40868702 40868848 -143419814 + L1MEd LINE L1 591 753 -5366 2084 96 10 51 chr4 40869373 40869687 -143418975 + AluSp SINE Alu 1 301 -12 732 256 94 27 chr4 40870251 40870474 -143418188 + MIR SINE MIR 1 238 -24 259 301 14 0 chr4 40870914 40870987 -143417675 - L2 LINE L2 -4 3309 3236 29 28 0 0 chr4 40871027 40871063 -143417599 + AT_rich Low_complexity Low_complexity 1 36 0 1219 124 0 0 chr4 40873607 40873776 -143414886 - AluSg/x SINE Alu -9 301 133 1672 118 51 8 chr4 40874628 40874883 -143413779 - AluSc SINE Alu -43 266 1 2121 91 29 33 chr4 40874907 40875214 -143413448 - AluY SINE Alu -4 307 2 266 225 36 27 chr4 40875389 40875500 -143413162 - L1ME4a LINE L1 -1 6120 6009 2200 118 7 0 chr4 40875611 40875916 -143412746 + AluSx SINE Alu 1 307 -5 2158 125 0 3 chr4 40875941 40876078 -143412584 + AluSx SINE Alu 1 137 -175 2234 106 10 3 chr4 40876078 40876379 -143412283 + AluSp SINE Alu 1 303 -10 2158 125 0 3 chr4 40876379 40876546 -143412116 + AluSx SINE Alu 137 304 -8 670 157 50 6 chr4 40876640 40876799 -143411863 + L1MB7 LINE L1 5284 5449 -729 400 160 0 0 chr4 40876823 40876898 -143411764 + FLAM_C SINE Alu 64 138 -5 2437 70 0 0 chr4 40876951 40877249 -143411413 - AluY SINE Alu -13 298 1 215 241 0 0 chr4 40877372 40877426 -143411236 + A-rich Low_complexity Low_complexity 1 54 0 3464 159 34 12 chr4 40877428 40878105 -143410557 + L1MB7 LINE L1 5485 6176 -8 773 266 90 69 chr4 40878144 40878224 -143410438 - L2 LINE L2 -715 2599 2522 1943 109 33 4 chr4 40878224 40878500 -143410162 - AluSx SINE Alu -28 284 1 773 266 90 69 chr4 40878500 40878684 -143409978 - L2 LINE L2 -792 2522 2343 1694 139 25 96 chr4 40878684 40878881 -143409781 - AluSx SINE Alu -11 301 92 2029 92 60 0 chr4 40878881 40879163 -143409499 - AluSp SINE Alu -14 299 1 2349 101 0 0 chr4 40879163 40879459 -143409203 - AluSg SINE Alu -13 297 1 1694 139 25 96 chr4 40879459 40879584 -143409078 - AluSx SINE Alu -218 94 1 773 266 90 69 chr4 40879584 40879697 -143408965 - L2 LINE L2 -971 2343 2213 1175 152 11 11 chr4 40879699 40879890 -143408772 - AluJo SINE Alu -8 304 114 452 241 51 23 chr4 40879893 40880089 -143408573 - L2 LINE L2 -1148 2166 1916 702 110 0 131 chr4 40880141 40880206 -143408456 + FLAM_C SINE Alu 15 52 -260 1432 115 119 81 chr4 40880206 40880501 -143408161 - AluSq SINE Alu -5 308 3 702 110 0 131 chr4 40880501 40880580 -143408082 + FLAM_C SINE Alu 52 140 -172 2090 133 10 0 chr4 40880583 40880883 -143407779 - AluSx SINE Alu -9 303 1 37 23 0 0 chr4 40880965 40881009 -143407653 + AT_rich Low_complexity Low_complexity 1 44 0 1738 161 14 18 chr4 40881010 40881295 -143407367 - AluJo SINE Alu -26 286 3 278 274 35 9 chr4 40881331 40881444 -143407218 - L1M4 LINE L1 -3439 2707 2592 203 318 0 16 chr4 40881450 40881513 -143407149 + CT-rich Low_complexity Low_complexity 3 64 0 23 0 0 0 chr4 40881513 40881536 -143407126 + AT_rich Low_complexity Low_complexity 1 23 0 1745 175 4 4 chr4 40881622 40881902 -143406760 - AluSx SINE Alu -22 290 11 3047 203 70 67 chr4 40881947 40881994 -143406668 - L1MD1 LINE L1 -309 5933 5888 1735 99 61 87 chr4 40881994 40882306 -143406356 - AluSx SINE Alu -8 304 1 3047 203 70 67 chr4 40882306 40882751 -143405911 - L1MD1 LINE L1 -354 5888 5446 2175 114 3 0 chr4 40882751 40883048 -143405614 - AluSp SINE Alu -15 298 1 3047 203 70 67 chr4 40883048 40883182 -143405480 - L1MD1 LINE L1 -796 5446 5314 1648 172 0 60 chr4 40883182 40883513 -143405149 - AluJo SINE Alu 0 312 2 3047 203 70 67 chr4 40883513 40883684 -143404978 - L1MD1 LINE L1 -928 5314 5145 2213 126 0 0 chr4 40883684 40883985 -143404677 - AluSx SINE Alu -11 301 1 3047 203 70 67 chr4 40883985 40884730 -143403932 - L1MD1 LINE L1 -1097 5145 4382 879 199 28 38 chr4 40884730 40884898 -143403764 + MER6B DNA MER2_type 2 169 -696 2482 82 0 0 chr4 40884898 40885201 -143403461 + AluSx SINE Alu 1 303 -9 879 199 28 38 chr4 40885201 40885243 -143403419 + MER6B DNA MER2_type 169 210 0 3047 203 70 67 chr4 40885243 40885850 -143402812 - L1MD1 LINE L1 -1860 4382 3779 1652 174 7 11 chr4 40885850 40886131 -143402531 - AluJo SINE Alu -7 305 26 1833 163 13 7 chr4 40886236 40886543 -143402119 - AluJo SINE Alu -3 309 1 23 0 0 0 chr4 40886638 40886661 -143402001 + AT_rich Low_complexity Low_complexity 1 23 0 2219 103 0 0 chr4 40887091 40887405 -143401257 - AluSx SINE Alu 0 314 1 29 47 0 0 chr4 40887410 40887453 -143401209 + AT_rich Low_complexity Low_complexity 1 43 0 2513 53 0 3 chr4 40888362 40888663 -143399999 + AluSx SINE Alu 1 300 -12 1387 183 57 23 chr4 40889351 40889516 -143399146 - AluJb SINE Alu -2 310 129 2053 142 0 3 chr4 40889516 40889812 -143398850 - AluSx SINE Alu -13 299 5 1387 183 57 23 chr4 40889812 40889946 -143398716 - AluJb SINE Alu -183 129 1 1949 162 13 7 chr4 40889964 40890272 -143398390 - AluJb SINE Alu -2 310 1 2247 83 0 3 chr4 40890429 40890718 -143397944 - AluY SINE Alu -23 288 1 211 222 32 79 chr4 40890913 40890976 -143397686 - L3 LINE CR1 -2 1575 1516 21 0 0 0 chr4 40891109 40891130 -143397532 + AT_rich Low_complexity Low_complexity 1 21 0 2146 108 50 0 chr4 40891279 40891576 -143397086 - AluSx SINE Alu 0 312 1 29 0 0 0 chr4 40891590 40891619 -143397043 + AT_rich Low_complexity Low_complexity 1 29 0 934 188 12 0 chr4 40891802 40891972 -143396690 - AluSc SINE Alu -5 304 133 200 35 35 0 chr4 40891974 40892003 -143396659 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2090 128 0 0 chr4 40892003 40892284 -143396378 - AluSx SINE Alu -31 281 1 713 188 0 43 chr4 40892392 40892530 -143396132 - FLAM_C SINE Alu -1 132 1 1487 176 79 21 chr4 40892808 40893087 -143395575 - AluJo SINE Alu -17 295 1 1044 195 83 25 chr4 40893273 40893514 -143395148 - AluJo SINE Alu -12 300 46 265 346 12 12 chr4 40894188 40894350 -143394312 + (TATATG)n Simple_repeat Simple_repeat 3 164 0 1037 145 64 51 chr4 40894773 40895007 -143393655 - Tigger7 DNA MER2_type 0 2491 2255 28 29 0 0 chr4 40895120 40895155 -143393507 + AT_rich Low_complexity Low_complexity 1 35 0 331 291 104 80 chr4 40895477 40895766 -143392896 - L1M4 LINE L1 -2225 3921 3626 2282 106 0 0 chr4 40896092 40896393 -143392269 - AluSx SINE Alu -11 301 1 824 201 7 0 chr4 40896399 40896553 -143392109 + Tigger4(Zombi) DNA MER2_type 2574 2728 -3 1958 130 7 11 chr4 40896582 40896866 -143391796 - AluJb SINE Alu -29 283 1 503 171 9 0 chr4 40897588 40897693 -143390969 + CT-rich Low_complexity Low_complexity 3 108 0 5319 20 0 0 chr4 40897700 40898309 -143390353 - L1PA3 LINE L1 0 6155 5547 194 0 0 37 chr4 40898309 40898336 -143390326 + (TTTC)n Simple_repeat Simple_repeat 1 26 0 2189 86 4 14 chr4 40898336 40898616 -143390046 - AluSq SINE Alu -33 280 4 432 0 0 0 chr4 40899096 40899144 -143389518 + (TCTA)n Simple_repeat Simple_repeat 2 49 0 2169 96 0 10 chr4 40899144 40899436 -143389226 - AluSx SINE Alu -23 289 1 709 201 6 41 chr4 40900147 40900316 -143388346 - L1M4 LINE L1 -578 5606 5444 1910 194 49 75 chr4 40900333 40900889 -143387773 - MER74A LTR ERVL -17 541 1 3727 171 54 25 chr4 40900889 40901931 -143386731 - L1M4 LINE L1 -727 5451 4382 21 71 0 0 chr4 40901987 40902029 -143386633 + AT_rich Low_complexity Low_complexity 1 42 0 764 110 9 0 chr4 40902036 40902145 -143386517 - FLAM_C SINE Alu -33 110 1 330 274 0 0 chr4 40902157 40902230 -143386432 - L1M4 LINE L1 -1776 4370 4298 2290 100 0 3 chr4 40902240 40902540 -143386122 - AluSg SINE Alu -11 299 1 1822 113 117 11 chr4 40902558 40902840 -143385822 - AluJb SINE Alu 0 312 1 21 0 0 0 chr4 40902840 40902861 -143385801 + AT_rich Low_complexity Low_complexity 1 21 0 7445 62 12 42 chr4 40903330 40904894 -143383768 - SVA Other Other -520 1385 1 180 0 0 0 chr4 40904894 40904914 -143383748 + (GGGAGA)n Simple_repeat Simple_repeat 2 21 0 251 0 0 31 chr4 40904918 40904950 -143383712 + MER51A LTR ERV1 243 273 -361 1645 172 48 0 chr4 40906058 40906350 -143382312 - AluJb SINE Alu 0 305 1 2103 192 112 59 chr4 40906577 40907103 -143381559 - MLT2B3 LTR ERVL 0 554 1 1911 134 0 0 chr4 40907964 40908239 -143380423 - AluSx SINE Alu -3 309 35 316 290 159 9 chr4 40908443 40908550 -143380112 - L2 LINE L2 -5 3267 3145 2330 86 3 3 chr4 40908630 40908960 -143379702 + AluSx SINE Alu 1 312 0 1506 211 42 135 chr4 40909278 40909659 -143379003 - L1MA9 LINE L1 0 6300 5885 7173 52 38 21 chr4 40909659 40911251 -143377411 - SVA Other Other -723 1386 1 1506 211 42 135 chr4 40911251 40911401 -143377261 - L1MA9 LINE L1 -415 5885 5846 844 175 0 29 chr4 40911401 40911538 -143377124 - FLAM_C SINE Alu 0 133 1 1506 211 42 135 chr4 40911538 40911643 -143377019 - L1MA9 LINE L1 -454 5846 5733 233 100 40 60 chr4 40911645 40911695 -143376967 + Alu SINE Alu 250 298 -3 2386 221 117 13 chr4 40911713 40912337 -143376325 + L1MB7 LINE L1 5480 6168 -16 2539 67 0 10 chr4 40912361 40912675 -143375987 + AluY SINE Alu 1 311 0 1416 205 90 59 chr4 40912951 40913133 -143375529 + L1MC5 LINE L1 7251 7426 -535 1977 145 0 13 chr4 40913133 40913437 -143375225 + AluSx SINE Alu 1 300 -12 1416 205 90 59 chr4 40913437 40913766 -143374896 + L1MC5 LINE L1 7426 7778 -183 1689 161 14 10 chr4 40914028 40914320 -143374342 - AluSx SINE Alu -19 293 1 560 254 22 7 chr4 40914967 40915105 -143373557 - MIR SINE MIR -93 169 30 255 311 58 0 chr4 40915102 40915205 -143373457 + MIR SINE MIR 154 262 0 * 21 71 0 0 chr4 40917077 40917119 -143371543 + AT_rich Low_complexity Low_complexity 1 42 0 2263 108 3 19 chr4 40917858 40918174 -143370488 + AluSx SINE Alu 1 311 -1 1184 174 34 34 chr4 40919462 40919697 -143368965 + MER46A DNA MER2_type 2 236 0 21 0 0 0 chr4 40921047 40921068 -143367594 + AT_rich Low_complexity Low_complexity 1 21 0 1667 149 100 0 chr4 40921264 40921533 -143367129 + AluSx SINE Alu 1 296 -16 190 347 137 0 chr4 40921779 40921918 -143366744 - MIR SINE MIR -51 157 32 1085 293 80 27 chr4 40922077 40922527 -143366135 - MLT1J LTR MaLR -37 474 1 406 127 0 0 chr4 40922621 40922684 -143365978 - AluSq SINE Alu -11 300 238 1362 130 0 0 chr4 40922684 40922868 -143365794 - AluSq SINE Alu -129 184 1 1021 259 51 22 chr4 40923042 40923397 -143365265 + MER47A DNA MER2_type 1 365 -1 235 346 38 69 chr4 40923647 40923994 -143364668 + L1MC4a LINE L1 392 727 -5478 1205 201 165 35 chr4 40924008 40924529 -143364133 + L1MC5 LINE L1 7318 7906 -55 1588 130 169 8 chr4 40924968 40925222 -143363440 + AluSg SINE Alu 1 295 -5 1110 192 58 9 chr4 40925462 40925686 -143362976 - MLT2B3 LTR ERVL 0 554 320 1064 268 42 0 chr4 40925694 40925955 -143362707 - MLT1F1 LTR MaLR -293 274 3 244 293 73 0 chr4 40925956 40926038 -143362624 - MIR SINE MIR -24 238 151 1530 247 146 13 chr4 40926045 40926579 -143362083 + MLT1L LTR MaLR 3 607 -8 333 287 41 8 chr4 40926591 40926713 -143361949 - MIR SINE MIR -117 145 20 26 30 0 0 chr4 40927765 40927798 -143360864 + AT_rich Low_complexity Low_complexity 1 33 0 1788 160 29 0 chr4 40928013 40928288 -143360374 - AluSx SINE Alu -20 292 10 209 250 0 40 chr4 40928366 40928442 -143360220 + (TATATG)n Simple_repeat Simple_repeat 5 77 0 2287 112 3 0 chr4 40929156 40929461 -143359201 + AluSp SINE Alu 1 306 -7 1636 93 73 4 chr4 40929485 40929732 -143358930 - L1MA3 LINE L1 0 6305 6042 447 341 141 17 chr4 40929950 40930469 -143358193 + HAL1b LINE L1 118 1504 -648 488 248 40 28 chr4 40930898 40931191 -143357471 + L1MC4a LINE L1 2169 2315 -3902 1557 141 16 4 chr4 40931545 40931794 -143356868 + AluSx SINE Alu 45 296 -16 343 323 52 22 chr4 40931798 40932027 -143356635 + L1MC4a LINE L1 2832 3067 -3148 2268 112 3 0 chr4 40932083 40932387 -143356275 + AluSx SINE Alu 1 305 -7 1663 147 3 67 chr4 40932737 40933051 -143355611 + AluJb SINE Alu 1 294 -18 675 127 18 9 chr4 40933897 40934006 -143354656 + MLT1B LTR MaLR 1 110 -357 2144 146 47 71 chr4 40934006 40934317 -143354345 - MLT2A2 LTR ERVL 0 554 230 2080 107 0 30 chr4 40934317 40934615 -143354047 - AluSx SINE Alu -23 289 1 2144 146 47 71 chr4 40934615 40934840 -143353822 - MLT2A2 LTR ERVL -324 230 1 1369 131 30 102 chr4 40934841 40935146 -143353516 + MLT1B LTR MaLR 108 390 0 181 269 15 45 chr4 40935470 40935537 -143353125 - L3 LINE CR1 -16 1561 1497 281 245 0 41 chr4 40936191 40936289 -143352373 + T-rich Low_complexity Low_complexity 2 95 0 1643 136 8 0 chr4 40936497 40936732 -143351930 + AluJo SINE Alu 1 237 -75 1587 188 32 133 chr4 40936737 40936921 -143351741 + L1MA6 LINE L1 5593 5794 -506 2184 112 3 0 chr4 40936921 40937215 -143351447 + AluSx SINE Alu 1 295 -17 1587 188 32 133 chr4 40937215 40937418 -143351244 + L1MA6 LINE L1 5794 5902 -398 1499 172 40 40 chr4 40937418 40937721 -143350941 - AluJo SINE Alu -7 305 3 1587 188 32 133 chr4 40937721 40937928 -143350734 + L1MA6 LINE L1 5902 6128 -172 1673 128 69 10 chr4 40937939 40938228 -143350434 + AluSq SINE Alu 1 306 -7 2423 58 0 0 chr4 40938229 40938520 -143350142 + AluY SINE Alu 21 311 0 1930 139 63 27 chr4 40939123 40939454 -143349208 + MER61A LTR ERV1 1 343 0 2346 112 0 0 chr4 40939734 40940046 -143348616 + AluSx SINE Alu 1 312 0 192 309 73 0 chr4 40940128 40940196 -143348466 + MIR3 SINE MIR 121 193 -15 1082 94 7 0 chr4 40940431 40940580 -143348082 + AluSg/x SINE Alu 154 303 -9 247 181 60 78 chr4 40940687 40940803 -143347859 + L1MC4a LINE L1 3204 3317 -2898 767 53 21 0 chr4 40941482 40941576 -143347086 - AluS SINE Alu -215 97 2 706 245 106 72 chr4 40941608 40942266 -143346396 + L1MC4a LINE L1 5221 5472 -743 2283 105 0 0 chr4 40942383 40942677 -143345985 + AluSg SINE Alu 1 294 -16 1551 259 101 27 chr4 40942915 40943180 -143345482 - MLT1J LTR MaLR -2 509 265 2130 121 0 7 chr4 40943180 40943485 -143345177 + AluSx SINE Alu 3 305 -7 1551 259 101 27 chr4 40943485 40943693 -143344969 - MLT1J LTR MaLR -246 265 1 1429 119 23 9 chr4 40943961 40944179 -143344483 - AluJb SINE Alu -9 303 83 2121 117 0 0 chr4 40944208 40944490 -143344172 - AluSx SINE Alu -30 282 1 26 0 0 0 chr4 40944492 40944518 -143344144 + AT_rich Low_complexity Low_complexity 1 26 0 368 262 20 74 chr4 40944624 40944826 -143343836 - L1ME4a LINE L1 -194 5927 5737 2481 50 0 3 chr4 40944851 40945149 -143343513 - AluY SINE Alu -14 297 1 377 283 161 49 chr4 40945372 40945701 -143342961 - MLT1L LTR MaLR -241 374 9 23 0 0 0 chr4 40945873 40945896 -143342766 + AT_rich Low_complexity Low_complexity 1 23 0 370 289 25 0 chr4 40945999 40946120 -143342542 - L1ME4a LINE L1 0 6121 5998 2177 112 0 0 chr4 40946187 40946512 -143342150 + AluSx SINE Alu 1 325 0 392 228 0 65 chr4 40946729 40946821 -143341841 + MIR SINE MIR 72 157 -105 615 171 0 9 chr4 40947984 40948095 -143340567 - MER1B DNA MER1_type -187 110 1 488 113 0 0 chr4 40948156 40948227 -143340435 - L1ME4a LINE L1 -223 5898 5828 1014 110 0 7 chr4 40948997 40949133 -143339529 - AluJo SINE Alu -177 135 1 785 215 31 31 chr4 40949816 40949976 -143338686 + MIR SINE MIR 56 218 -44 1875 155 3 3 chr4 40949976 40950280 -143338382 + AluJb SINE Alu 1 304 -8 785 215 31 31 chr4 40950280 40950314 -143338348 + MIR SINE MIR 217 250 -12 2211 91 3 3 chr4 40950376 40950705 -143337957 + AluSx SINE Alu 1 329 0 2006 110 0 21 chr4 40951120 40951411 -143337251 + AluSq SINE Alu 1 285 -28 336 64 0 0 chr4 40951411 40951458 -143337204 + (CA)n Simple_repeat Simple_repeat 2 48 0 604 272 63 66 chr4 40951520 40951807 -143336855 + L2 LINE L2 3028 3313 0 23 0 0 0 chr4 40952198 40952221 -143336441 + AT_rich Low_complexity Low_complexity 1 23 0 1052 295 42 32 chr4 40952649 40953123 -143335539 - MARNA DNA Mariner -98 488 10 21 36 0 0 chr4 40953449 40953477 -143335185 + AT_rich Low_complexity Low_complexity 1 28 0 234 368 24 8 chr4 40954385 40954510 -143334152 + MIR SINE MIR 56 182 -80 287 25 25 0 chr4 40954987 40955027 -143333635 + (GA)n Simple_repeat Simple_repeat 1 41 0 1579 183 13 36 chr4 40956444 40956750 -143331912 - AluJo SINE Alu -13 299 1 25 0 0 0 chr4 40956752 40956777 -143331885 + AT_rich Low_complexity Low_complexity 1 25 0 2092 107 0 0 chr4 40956777 40957058 -143331604 - AluSx SINE Alu -31 281 1 330 355 118 33 chr4 40957642 40958031 -143330631 + L2 LINE L2 987 1408 -1906 210 296 136 30 chr4 40958219 40958351 -143330311 + L2 LINE L2 1791 1936 -1378 711 146 0 0 chr4 40959439 40959549 -143329113 + MSTD LTR MaLR 1 110 -286 1744 140 56 7 chr4 40960646 40960931 -143327731 + AluSg SINE Alu 1 299 -11 2444 55 0 0 chr4 40961291 40961583 -143327079 - AluY SINE Alu -15 296 5 471 257 0 18 chr4 40961699 40961808 -143326854 - L2 LINE L2 0 3313 3207 651 215 23 0 chr4 40961992 40962122 -143326540 - MER94 DNA DNA 0 134 2 289 240 171 0 chr4 40962845 40962974 -143325688 + L1ME4a LINE L1 5754 5904 -217 216 259 86 12 chr4 40963191 40963272 -143325390 - MIR SINE MIR -79 129 43 330 289 144 6 chr4 40963613 40963778 -143324884 - MIR SINE MIR -56 206 18 268 326 155 0 chr4 40964200 40964329 -143324333 - MIR3 SINE MIR -17 191 43 386 110 68 14 chr4 40964531 40964604 -143324058 - AluSg/x SINE Alu -140 162 86 998 157 17 61 chr4 40964604 40964834 -143323828 - AluJo SINE Alu -92 220 1 225 0 0 0 chr4 40965513 40965538 -143323124 + (TTCC)n Simple_repeat Simple_repeat 4 28 0 971 163 0 0 chr4 40965666 40965826 -143322836 + AluSg/x SINE Alu 129 288 -24 1817 139 24 0 chr4 40965831 40966119 -143322543 + AluSx SINE Alu 1 295 -17 433 252 45 96 chr4 40966150 40966483 -143322179 + L1MC5 LINE L1 7611 7926 -35 2204 106 6 0 chr4 40966504 40966815 -143321847 - AluSp SINE Alu 0 313 1 305 147 133 0 chr4 40967767 40967842 -143320820 - L1ME4a LINE L1 -4 6117 6033 406 232 77 50 chr4 40967912 40968093 -143320569 - L1ME4a LINE L1 -187 5934 5749 1089 79 0 0 chr4 40968195 40968335 -143320327 - AluSg1 SINE Alu -169 140 1 1668 206 110 30 chr4 40968578 40968868 -143319794 + Charlie4a DNA MER1_type 1 343 -1618 1927 133 0 17 chr4 40968868 40969168 -143319494 + AluSq SINE Alu 1 295 -18 1668 206 110 30 chr4 40969168 40969339 -143319323 + Charlie4a DNA MER1_type 343 499 -9 269 169 0 92 chr4 40969350 40969415 -143319247 + L2 LINE L2 3254 3312 -1 2347 97 3 0 chr4 40969530 40969841 -143318821 + AluSq SINE Alu 1 312 -1 528 328 138 3 chr4 40969894 40970214 -143318448 - L2 LINE L2 -530 2784 2422 705 177 24 0 chr4 40970381 40970505 -143318157 + MLT1A1 LTR MaLR 239 365 0 4893 111 18 10 chr4 40970780 40971466 -143317196 + LTR8 LTR ERV1 1 691 0 628 234 122 54 chr4 40971480 40971685 -143316977 - MIR SINE MIR -35 227 9 256 119 24 24 chr4 40971931 40971973 -143316689 - AluSg/x SINE Alu -106 196 155 * 1154 157 127 4 chr4 40971971 40972207 -143316455 + MER58B DNA MER1_type 76 340 -1 365 246 30 75 chr4 40972211 40972345 -143316317 + MIR3 SINE MIR 3 130 -78 456 241 139 0 chr4 40972364 40972501 -143316161 + MIR SINE MIR 9 164 -98 471 266 8 23 chr4 40972537 40972665 -143315997 + MIR SINE MIR 137 262 0 291 327 29 19 chr4 40972668 40972772 -143315890 + MIR SINE MIR 157 261 -1 257 295 95 33 chr4 40972870 40973080 -143315582 - L2 LINE L2 -237 3035 2813 304 250 16 133 chr4 40973088 40973216 -143315446 - L3 LINE CR1 -580 997 885 1491 153 3 92 chr4 40973216 40973542 -143315120 + AluSq SINE Alu 1 297 -16 274 342 124 43 chr4 40973577 40973811 -143314851 - L2 LINE L2 -13 3259 3007 180 0 0 0 chr4 40974432 40974452 -143314210 + (A)n Simple_repeat Simple_repeat 1 20 0 27 62 0 0 chr4 40975225 40975273 -143313389 + AT_rich Low_complexity Low_complexity 1 48 0 2354 81 0 0 chr4 40975581 40975890 -143312772 + AluSx SINE Alu 1 309 -3 2100 130 0 7 chr4 40976292 40976600 -143312062 - AluSg SINE Alu -4 306 1 407 279 0 10 chr4 40976716 40976820 -143311842 - MIR SINE MIR -6 256 154 1014 99 13 20 chr4 40976823 40976975 -143311687 + AluSq/x SINE Alu 1 151 -161 * 1386 157 0 0 chr4 40976974 40977191 -143311471 + AluSg/x SINE Alu 88 304 -6 21 0 0 0 chr4 40977316 40977337 -143311325 + AT_rich Low_complexity Low_complexity 1 21 0 1890 170 51 48 chr4 40977933 40978328 -143310334 + MSTD LTR MaLR 1 396 0 572 275 54 0 chr4 40978412 40978561 -143310101 + L2 LINE L2 1825 1981 -1333 1595 198 13 0 chr4 40978735 40979043 -143309619 - AluSx SINE Alu 0 312 1 1153 153 0 5 chr4 40979217 40979406 -143309256 - AluSx SINE Alu -124 188 1 249 303 28 37 chr4 40979430 40979539 -143309123 + MIR SINE MIR 154 261 -1 1810 99 84 0 chr4 40979767 40980040 -143308622 - AluSx SINE Alu -16 296 1 2064 131 3 0 chr4 40980698 40981010 -143307652 + AluSq SINE Alu 1 313 0 1746 159 13 25 chr4 40981030 40981344 -143307318 + AluJo SINE Alu 1 310 -2 24 0 0 0 chr4 40981540 40981564 -143307098 + AT_rich Low_complexity Low_complexity 1 24 0 1041 80 0 20 chr4 40981564 40981715 -143306947 + AluY SINE Alu 163 310 -1 28 0 0 0 chr4 40981715 40981743 -143306919 + AT_rich Low_complexity Low_complexity 1 28 0 289 241 35 11 chr4 40981864 40981951 -143306711 + MIR SINE MIR 56 145 -63 1689 183 30 19 chr4 40982130 40982491 -143306171 + MLT1A1 LTR MaLR 1 365 0 1927 112 58 10 chr4 40983911 40984205 -143304457 - AluSg SINE Alu -2 308 1 209 321 0 0 chr4 40984738 40984794 -143303868 + CT-rich Low_complexity Low_complexity 2 57 0 2051 113 14 0 chr4 40985150 40985443 -143303219 + AluSx SINE Alu 1 297 -15 485 299 176 0 chr4 40985576 40985763 -143302899 + MIR SINE MIR 12 231 -31 222 233 0 0 chr4 40985800 40985860 -143302802 + (TATATG)n Simple_repeat Simple_repeat 1 60 0 186 43 0 0 chr4 40985860 40985883 -143302779 + (CA)n Simple_repeat Simple_repeat 1 23 0 386 295 115 19 chr4 40985993 40986149 -143302513 + L1ME4a LINE L1 5840 6010 -111 2129 122 0 0 chr4 40986526 40986830 -143301832 - AluSx SINE Alu -7 305 2 425 278 126 7 chr4 40986923 40987074 -143301588 + MIR3 SINE MIR 19 187 -21 471 374 87 0 chr4 40987538 40987768 -143300894 + MIR SINE MIR 13 262 0 225 194 190 110 chr4 40988727 40988869 -143299793 + L2 LINE L2 2975 3145 -168 2173 100 3 0 chr4 40988869 40989169 -143299493 - AluY SINE Alu -10 301 1 225 194 190 110 chr4 40989169 40989263 -143299399 + L2 LINE L2 3145 3230 -83 763 232 127 6 chr4 40989805 40989986 -143298676 - MIR SINE MIR -32 230 28 972 287 100 16 chr4 40989990 40990198 -143298464 - L1ME3 LINE L1 -2 6168 5979 2275 79 0 0 chr4 40990198 40990489 -143298173 - AluSc SINE Alu -17 292 2 972 287 100 16 chr4 40990489 40990945 -143297717 - L1ME3 LINE L1 -191 5979 5477 1114 160 0 0 chr4 40990948 40991123 -143297539 - AluSg/x SINE Alu 0 312 138 1654 81 5 0 chr4 40991127 40991350 -143297312 - AluSg/x SINE Alu -2 310 87 370 138 4 0 chr4 40991350 40991413 -143297249 - Alu SINE Alu -253 49 1 378 275 127 11 chr4 40991423 40991612 -143297050 - L1ME3 LINE L1 -694 5468 5258 774 277 53 59 chr4 40991872 40992088 -143296574 - LTR33 LTR ERVL 0 521 305 2093 77 0 14 chr4 40992088 40992417 -143296245 - AluY SINE Alu 0 325 1 774 277 53 59 chr4 40992417 40992723 -143295939 - LTR33 LTR ERVL -216 305 1 2006 114 0 0 chr4 40993081 40993361 -143295301 - AluSq SINE Alu -27 286 7 261 148 123 49 chr4 40993376 40993457 -143295205 - MER5C DNA MER1_type -169 155 69 724 198 108 78 chr4 40993457 40993815 -143294847 - LTR56 LTR ERV1 0 445 100 2327 191 74 7 chr4 40993825 40994287 -143294375 - LTR22 LTR ERVK -16 493 1 511 157 35 25 chr4 40994287 40994396 -143294266 - LTR56 LTR ERV1 -318 119 1 184 339 65 0 chr4 40994397 40994459 -143294203 - MER5C DNA MER1_type -253 71 6 306 0 0 0 chr4 40994906 40994940 -143293722 + (TA)n Simple_repeat Simple_repeat 2 35 0 2153 109 3 3 chr4 40994940 40995244 -143293418 - AluSx SINE Alu -8 304 1 387 268 101 48 chr4 40995459 40995627 -143293035 + MIR SINE MIR 85 261 -1 1869 188 133 40 chr4 40995656 40995786 -143292876 + MER34 LTR ERV1 1 118 -424 2269 90 3 0 chr4 40995786 40996087 -143292575 + AluSp SINE Alu 1 302 -11 1869 188 133 40 chr4 40996087 40996452 -143292210 + MER34 LTR ERV1 118 542 0 3115 160 17 96 chr4 40996490 40996579 -143292083 - LTR8 LTR ERV1 -1 690 596 2099 110 0 7 chr4 40996579 40996879 -143291783 + AluSg1 SINE Alu 1 298 -11 3115 160 17 96 chr4 40996879 40997538 -143291124 - LTR8 LTR ERV1 -95 596 1 239 53 18 70 chr4 40998121 40998178 -143290484 + (GGGAGA)n Simple_repeat Simple_repeat 1 54 0 469 305 79 6 chr4 40998316 40998493 -143290169 - MER91A DNA MER1_type -6 190 1 4056 113 10 20 chr4 40998767 40999369 -143289293 - MER4A LTR ERV1 -4 596 1 4357 75 11 0 chr4 40999405 40999953 -143288709 - MER41A LTR ERV1 0 554 1 1322 132 0 5 chr4 41000675 41000864 -143287798 + MER4D LTR ERV1 1 188 -715 2170 108 13 3 chr4 41000913 41001219 -143287443 + AluSx SINE Alu 1 309 -3 1220 140 33 0 chr4 41001244 41001448 -143287214 + MER4D LTR ERV1 157 370 -502 703 84 53 0 chr4 41001448 41001543 -143287119 - AluJ/FLAM SINE Alu -212 100 1 2746 151 32 47 chr4 41001543 41002078 -143286584 + MER4D LTR ERV1 367 893 -10 390 305 46 15 chr4 41002283 41002414 -143286248 + L2 LINE L2 3137 3271 -1 473 285 8 23 chr4 41002492 41002622 -143286040 + MER5A DNA MER1_type 37 164 -25 1603 86 133 0 chr4 41002644 41002878 -143285784 + LTR9 LTR ERV1 1 265 -347 1824 109 3 78 chr4 41002878 41003198 -143285464 + AluSx SINE Alu 1 296 -16 1446 139 68 0 chr4 41003317 41003569 -143285093 - AluJo SINE Alu -35 277 9 447 285 13 20 chr4 41003738 41003889 -143284773 + L2 LINE L2 2837 2986 -286 347 295 29 19 chr4 41003901 41004006 -143284656 + MER5B DNA MER1_type 19 124 -54 21 0 0 0 chr4 41005646 41005667 -143282995 + AT_rich Low_complexity Low_complexity 1 21 0 529 234 7 122 chr4 41006807 41007085 -143281577 + MIR SINE MIR 5 250 -12 274 277 0 24 chr4 41008186 41008269 -143280393 + MER5B DNA MER1_type 2 82 -96 344 200 86 0 chr4 41009247 41009317 -143279345 - MER63B DNA MER1_type 0 436 361 * 893 217 22 57 chr4 41009316 41009546 -143279116 - MER63B DNA MER1_type -214 222 1 635 292 96 19 chr4 41009570 41009778 -143278884 + L1ME4a LINE L1 5571 5814 -307 1954 134 27 0 chr4 41009778 41010077 -143278585 - AluJb SINE Alu -5 307 1 635 292 96 19 chr4 41010077 41010190 -143278472 + L1ME4a LINE L1 5814 5917 -204 2544 47 0 19 chr4 41010787 41011104 -143277558 - AluY SINE Alu 0 311 1 398 253 25 101 chr4 41011105 41011303 -143277359 - MER5A DNA MER1_type -5 184 2 264 127 0 0 chr4 41011349 41011404 -143277258 + (TG)n Simple_repeat Simple_repeat 2 56 0 2095 118 3 10 chr4 41012813 41013109 -143275553 + AluSx SINE Alu 1 294 -18 2295 99 0 0 chr4 41014759 41015053 -143273609 + AluSg1 SINE Alu 1 294 -15 290 164 0 55 chr4 41015373 41015428 -143273234 - MER58 DNA MER1_type -2364 56 5 873 165 0 0 chr4 41016127 41016260 -143272402 - FLAM_C SINE Alu 0 133 1 633 189 0 39 chr4 41016522 41016649 -143272013 - L1ME3A LINE L1 0 6170 6049 2500 83 3 3 chr4 41016678 41016991 -143271671 + AluSq SINE Alu 1 313 0 1862 155 0 26 chr4 41017070 41017380 -143271282 + AluJb SINE Alu 9 310 -2 227 255 32 32 chr4 41017501 41017595 -143271067 + MIR SINE MIR 31 124 -138 297 239 0 34 chr4 41017629 41017717 -143270945 + L2 LINE L2 3188 3272 0 2199 96 7 10 chr4 41017879 41018172 -143270490 + AluSc SINE Alu 1 292 -17 2121 121 0 7 chr4 41018541 41018848 -143269814 + AluSx SINE Alu 1 305 -7 2386 93 3 0 chr4 41020968 41021268 -143267394 + AluSx SINE Alu 1 301 -11 578 280 5 31 chr4 41021291 41021484 -143267178 - MIR SINE MIR -72 190 3 1623 187 28 3 chr4 41021567 41021856 -143266806 + AluJb SINE Alu 1 296 -16 2206 126 0 0 chr4 41021866 41022160 -143266502 + AluSx SINE Alu 1 294 -18 180 0 0 0 chr4 41022163 41022183 -143266479 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 872 157 0 29 chr4 41022246 41022386 -143266276 + AluJo SINE Alu 1 136 -176 21 0 0 0 chr4 41022386 41022407 -143266255 + AT_rich Low_complexity Low_complexity 1 21 0 434 250 29 0 chr4 41022749 41022853 -143265809 - MIR SINE MIR -77 185 79 2148 117 3 3 chr4 41022979 41023286 -143265376 + AluJo SINE Alu 1 307 -5 328 344 46 7 chr4 41023744 41023895 -143264767 - MIR SINE MIR -73 189 33 459 0 0 0 chr4 41024317 41024368 -143264294 + (TG)n Simple_repeat Simple_repeat 2 52 0 2291 102 3 10 chr4 41026559 41026873 -143261789 + AluSx SINE Alu 1 312 0 232 100 0 0 chr4 41027704 41027734 -143260928 + Alu SINE Alu 259 288 -14 22 35 0 0 chr4 41027741 41027770 -143260892 + AT_rich Low_complexity Low_complexity 1 29 0 1848 152 20 7 chr4 41028314 41028616 -143260046 - AluJb SINE Alu -6 306 1 354 61 0 0 chr4 41028957 41029006 -143259656 + (TG)n Simple_repeat Simple_repeat 2 50 0 240 258 100 84 chr4 41029253 41029443 -143259219 - MLT1L LTR MaLR -226 389 197 725 209 33 0 chr4 41029658 41029811 -143258851 + MER106B DNA MER1_type 902 1059 0 1757 135 0 38 chr4 41030126 41030414 -143258248 - AluSx SINE Alu -1 311 35 229 253 36 48 chr4 41030709 41030792 -143257870 + MIR SINE MIR 110 191 -71 299 127 0 18 chr4 41032210 41032265 -143256397 + (TC)n Simple_repeat Simple_repeat 1 54 0 2169 122 3 0 chr4 41032635 41032931 -143255731 - AluSx SINE Alu -15 297 1 615 170 9 0 chr4 41033276 41033382 -143255280 - FLAM_A SINE Alu 0 142 36 202 182 0 0 chr4 41034358 41034391 -143254271 + polypyrimidine Low_complexity Low_complexity 2 34 0 2064 123 31 0 chr4 41034525 41034817 -143253845 + AluSx SINE Alu 5 305 -7 2240 122 0 0 chr4 41035061 41035372 -143253290 + AluSx SINE Alu 1 311 -1 225 280 189 8 chr4 41036250 41036382 -143252280 - L1ME4a LINE L1 -1 6120 5965 393 304 95 6 chr4 41037569 41037737 -143250925 - MIR3 SINE MIR -3 205 23 24 32 0 0 chr4 41037802 41037833 -143250829 + AT_rich Low_complexity Low_complexity 1 31 0 2423 87 3 0 chr4 41038004 41038304 -143250358 + AluSx SINE Alu 1 301 -11 239 277 24 24 chr4 41038568 41038651 -143250011 - L2 LINE L2 -222 3050 2968 21 0 0 0 chr4 41039481 41039502 -143249160 + AT_rich Low_complexity Low_complexity 1 21 0 15158 122 24 24 chr4 41040211 41042348 -143246314 + Tigger1 DNA MER2_type 24 2160 -258 840 161 129 0 chr4 41042348 41042503 -143246159 - FAM SINE Alu 0 175 1 15158 122 24 24 chr4 41042503 41042642 -143246020 + Tigger1 DNA MER2_type 2160 2303 -115 2468 82 3 0 chr4 41042642 41042946 -143245716 - AluSp SINE Alu -8 305 1 15158 122 24 24 chr4 41042946 41043063 -143245599 + Tigger1 DNA MER2_type 2302 2418 0 445 311 49 29 chr4 41043100 41043344 -143245318 - L1MC4a LINE L1 -1983 5825 5577 643 233 39 0 chr4 41043351 41043480 -143245182 + MER97a DNA MER1_type? 13 146 -748 1233 216 64 20 chr4 41043489 41043785 -143244877 + MER97c DNA MER1_type? 389 697 -393 1035 172 6 0 chr4 41043795 41043952 -143244710 - AluJb SINE Alu -23 289 132 1404 173 116 7 chr4 41043983 41044260 -143244402 - AluSx SINE Alu -5 307 1 493 209 47 34 chr4 41044300 41044448 -143244214 + MER97a DNA MER1_type? 745 894 0 736 266 10 14 chr4 41044719 41044926 -143243736 + MIR SINE MIR 26 231 -31 182 328 0 0 chr4 41045055 41045113 -143243549 - MIR SINE MIR -154 108 51 2521 84 3 0 chr4 41045121 41045431 -143243231 + AluSp SINE Alu 3 313 0 2218 109 26 0 chr4 41045751 41046055 -143242607 + AluSx SINE Alu 1 312 0 240 254 0 30 chr4 41046338 41046405 -143242257 + MIR3 SINE MIR 107 171 -37 2029 139 7 0 chr4 41046844 41047166 -143241496 + AluSx SINE Alu 1 324 0 347 267 0 0 chr4 41047315 41047390 -143241272 - MIR SINE MIR -180 82 8 2484 40 27 0 chr4 41047390 41047687 -143240975 + AluY SINE Alu 1 305 -6 2021 156 24 9 chr4 41047851 41048185 -143240477 + MER2 DNA MER2_type 1 339 -6 778 239 61 57 chr4 41048315 41048354 -143240308 - Charlie8 DNA MER1_type -93 248 211 1733 169 45 10 chr4 41048354 41048520 -143240142 - AluJo SINE Alu -12 300 118 183 42 0 0 chr4 41048520 41048544 -143240118 + (TTA)n Simple_repeat Simple_repeat 2 25 0 1733 169 45 10 chr4 41048544 41048667 -143239995 - AluJo SINE Alu -194 118 1 778 239 61 57 chr4 41048667 41048713 -143239949 - Charlie8 DNA MER1_type -130 211 167 1785 234 64 36 chr4 41048713 41049247 -143239415 - MLT1H LTR MaLR 0 549 1 778 239 61 57 chr4 41049247 41049407 -143239255 - Charlie8 DNA MER1_type -174 167 1 202 313 188 0 chr4 41049482 41049594 -143239068 - L2 LINE L2 -1 3271 3139 2334 113 33 30 chr4 41049744 41050107 -143238555 + THE1B LTR MaLR 1 364 0 1930 152 41 0 chr4 41050414 41050704 -143237958 - AluSq SINE Alu -11 302 1 204 40 0 0 chr4 41050816 41050841 -143237821 + (CA)n Simple_repeat Simple_repeat 1 25 0 1932 136 35 32 chr4 41050914 41051224 -143237438 - AluJo SINE Alu -1 311 1 2201 104 0 0 chr4 41051858 41052146 -143236516 - AluSc SINE Alu -21 288 1 784 184 35 0 chr4 41052580 41052721 -143235941 + FAM SINE Alu 22 167 -18 224 326 22 0 chr4 41052758 41052850 -143235812 + MIR SINE MIR 132 225 -37 2284 107 10 3 chr4 41053260 41053569 -143235093 + AluSx SINE Alu 1 311 -1 1592 180 20 36 chr4 41054209 41054515 -143234147 + AluJb SINE Alu 12 312 0 302 335 138 13 chr4 41054537 41054689 -143233973 + MIR SINE MIR 17 187 -75 2087 114 137 22 chr4 41054943 41054984 -143233678 - MSTA LTR MaLR 0 428 393 2359 91 0 26 chr4 41054984 41055292 -143233370 + AluSg SINE Alu 1 300 -10 2087 114 137 22 chr4 41055292 41055609 -143233053 - MSTA LTR MaLR -35 393 29 2171 125 0 7 chr4 41255952 41256256 -143032406 - AluSx SINE Alu -10 302 1 266 289 58 16 chr4 41256327 41256448 -143032214 + MIR SINE MIR 22 147 -61 247 238 56 63 chr4 41256495 41256621 -143032041 + L2 LINE L2 2585 2709 -605 1920 105 19 0 chr4 41256629 41256887 -143031775 + AluSx SINE Alu 1 263 -49 2569 69 0 0 chr4 41257574 41257878 -143030784 + AluY SINE Alu 1 304 -7 936 232 33 25 chr4 41257897 41258138 -143030524 - MLT1L LTR MaLR -328 287 45 1967 153 3 0 chr4 41258532 41258833 -143029829 + AluSx SINE Alu 1 302 -10 903 119 0 8 chr4 41259026 41259160 -143029502 - FLAM_A SINE Alu 0 133 1 665 166 136 18 chr4 41259534 41259703 -143028959 + MER5A DNA MER1_type 1 189 0 844 267 22 13 chr4 41259703 41259935 -143028727 + MIR SINE MIR 17 250 -12 26 30 0 0 chr4 41260277 41260310 -143028352 + AT_rich Low_complexity Low_complexity 1 33 0 1743 112 14 41 chr4 41260324 41260569 -143028093 + L1MB3 LINE L1 5895 6132 -51 2107 138 0 0 chr4 41260569 41260859 -143027803 + AluSx SINE Alu 1 290 -22 1743 112 14 41 chr4 41260859 41260908 -143027754 + L1MB3 LINE L1 6132 6181 -2 360 246 97 30 chr4 41260995 41261129 -143027533 + L1ME3A LINE L1 6027 6169 -1 1123 240 72 26 chr4 41261314 41261618 -143027044 - MLT1F1 LTR MaLR -2 565 248 829 236 121 73 chr4 41261618 41261691 -143026971 + L2 LINE L2 2634 2702 -611 1808 147 73 50 chr4 41261691 41261815 -143026847 + MLT1B LTR MaLR 1 121 -269 2031 107 13 44 chr4 41261815 41262132 -143026530 + AluSx SINE Alu 1 307 -5 1808 147 73 50 chr4 41262132 41262388 -143026274 + MLT1B LTR MaLR 121 390 0 829 236 121 73 chr4 41262388 41262580 -143026082 + L2 LINE L2 2702 2883 -430 2941 131 33 2 chr4 41262580 41263031 -143025631 + MER4C LTR ERV1 1 465 0 829 236 121 73 chr4 41263031 41263210 -143025452 + L2 LINE L2 2883 3052 -261 1508 116 31 18 chr4 41263210 41263434 -143025228 - AluJb SINE Alu -2 310 84 829 236 121 73 chr4 41263434 41263608 -143025054 + L2 LINE L2 3052 3280 -33 714 179 114 0 chr4 41263615 41263755 -143024907 + MLT1B LTR MaLR 235 390 0 213 219 41 14 chr4 41263755 41263828 -143024834 + L2 LINE L2 2712 2786 -528 1518 158 82 14 chr4 41264000 41264279 -143024383 + AluJo SINE Alu 1 298 -14 21 0 0 0 chr4 41264443 41264464 -143024198 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr4 41264654 41264674 -143023988 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 365 136 17 0 chr4 41264689 41264748 -143023914 - U7 snRNA snRNA -1 62 3 198 256 64 13 chr4 41265033 41265111 -143023551 - MIR SINE MIR -128 134 53 520 273 54 69 chr4 41265441 41265761 -143022901 + L2 LINE L2 2985 3301 -12 2292 102 0 0 chr4 41265761 41266055 -143022607 + AluSq SINE Alu 1 294 -19 520 273 54 69 chr4 41266055 41266068 -143022594 + L2 LINE L2 3301 3313 0 363 279 123 41 chr4 41266829 41267048 -143021614 + MIR SINE MIR 18 254 -8 23463 135 11 20 chr4 41267151 41268392 -143020270 + L1M1 LINE L1 24 1275 -6290 2395 103 0 0 chr4 41268392 41268703 -143019959 + AluSx SINE Alu 1 311 -1 23463 135 11 20 chr4 41268703 41270275 -143018387 + L1M1 LINE L1 1275 2860 -4705 2214 133 3 0 chr4 41270275 41270584 -143018078 + AluSx SINE Alu 1 310 -2 23463 135 11 20 chr4 41270584 41271181 -143017481 + L1M1 LINE L1 2860 3402 -4163 2343 110 3 0 chr4 41271181 41271490 -143017172 + AluSq SINE Alu 1 310 -3 23463 135 11 20 chr4 41271490 41272107 -143016555 + L1M1 LINE L1 3402 4023 -3542 2384 90 3 0 chr4 41272111 41272410 -143016252 + AluY SINE Alu 1 300 -11 2009 101 67 24 chr4 41272410 41272738 -143015924 + L1MA3 LINE L1 5941 6282 -23 882 103 0 22 chr4 41272909 41273045 -143015617 + FLAM_C SINE Alu 1 133 0 287 252 153 9 chr4 41273600 41273711 -143014951 - L2 LINE L2 -2 3270 3144 2371 109 0 0 chr4 41273731 41274035 -143014627 + AluSx SINE Alu 1 304 -8 191 317 125 0 chr4 41274547 41274667 -143013995 + L2 LINE L2 3179 3313 0 2222 121 10 0 chr4 41274676 41274982 -143013680 - AluSg SINE Alu -1 309 1 21 0 0 0 chr4 41275680 41275701 -143012961 + AT_rich Low_complexity Low_complexity 1 21 0 785 251 20 20 chr4 41275878 41276073 -143012589 + MER58A DNA MER1_type 30 224 0 509 284 58 36 chr4 41276073 41276298 -143012364 + MIR SINE MIR 31 260 -2 29 0 0 0 chr4 41276306 41276335 -143012327 + AT_rich Low_complexity Low_complexity 1 29 0 1932 123 7 7 chr4 41276339 41276616 -143012046 - AluSx SINE Alu -10 302 26 481 278 114 13 chr4 41277142 41277324 -143011338 + MIR SINE MIR 13 224 -38 1810 162 43 13 chr4 41277324 41277627 -143011035 + AluJb SINE Alu 1 312 0 481 278 114 13 chr4 41277627 41277671 -143010991 + MIR SINE MIR 224 262 0 1885 106 15 103 chr4 41278403 41278743 -143009919 - AluJb SINE Alu -2 310 1 1728 170 35 0 chr4 41278916 41279204 -143009458 - AluJb SINE Alu -14 298 1 22 35 0 0 chr4 41279211 41279240 -143009422 + AT_rich Low_complexity Low_complexity 1 29 0 2045 189 13 57 chr4 41279240 41279712 -143008950 + L1MB5 LINE L1 5724 6174 0 920 139 0 7 chr4 41279718 41279855 -143008807 + AluJo SINE Alu 1 136 -176 270 0 0 0 chr4 41279995 41280025 -143008637 + (A)n Simple_repeat Simple_repeat 1 30 0 525 144 0 0 chr4 41280451 41280541 -143008121 + L1MA5A LINE L1 6206 6295 -2 2392 89 7 0 chr4 41280613 41280915 -143007747 + AluSp SINE Alu 1 304 -9 215 30 0 30 chr4 41281014 41281047 -143007615 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1686 146 91 0 chr4 41281256 41281531 -143007131 + AluJo SINE Alu 1 300 -12 2312 100 3 6 chr4 41281705 41282016 -143006646 + AluSq SINE Alu 2 311 -2 192 77 0 0 chr4 41282530 41282556 -143006106 + (TCTCCC)n Simple_repeat Simple_repeat 1 26 0 1049 194 5 5 chr4 41282752 41282943 -143005719 - AluJ SINE Alu -9 303 113 817 131 16 0 chr4 41282953 41283075 -143005587 - AluJ SINE Alu -177 135 12 400 225 26 113 chr4 41283157 41283308 -143005354 + L2 LINE L2 3172 3309 -4 2148 121 10 13 chr4 41283761 41284067 -143004595 + AluSx SINE Alu 1 305 -7 187 293 61 10 chr4 41284706 41284805 -143003857 + MIR SINE MIR 80 183 -79 1365 158 73 12 chr4 41285051 41285297 -143003365 + AluJo SINE Alu 16 276 -36 1674 77 0 5 chr4 41285297 41285505 -143003157 - AluSg/x SINE Alu -9 301 95 1769 129 8 0 chr4 41285605 41285846 -143002816 - AluSg SINE Alu -67 243 1 351 175 0 0 chr4 41285861 41285918 -143002744 + MER3 DNA MER1_type 153 209 0 282 232 0 0 chr4 41285875 41285931 -143002731 - MER3 DNA MER1_type -119 90 35 * 401 270 19 116 chr4 41285941 41286064 -143002598 - MER117 DNA MER1_type -3 194 99 1578 181 7 4 chr4 41286064 41286341 -143002321 + AluJb SINE Alu 1 278 -34 401 270 19 116 chr4 41286341 41286432 -143002230 - MER117 DNA MER1_type -98 99 1 2356 107 0 0 chr4 41287248 41287556 -143001106 - AluY SINE Alu -2 309 2 2451 83 3 3 chr4 41287557 41287858 -143000804 - AluSc SINE Alu -8 301 1 240 222 0 0 chr4 41287873 41287927 -143000735 + T-rich Low_complexity Low_complexity 1 54 0 1806 173 0 10 chr4 41288399 41288699 -142999963 + AluSx SINE Alu 1 297 -15 975 146 11 54 chr4 41288699 41288884 -142999778 + AluSg/x SINE Alu 132 308 -2 410 200 35 0 chr4 41289108 41289193 -142999469 + MER58C DNA MER1_type 36 123 -92 1228 157 22 26 chr4 41289202 41289431 -142999231 + AluJb SINE Alu 85 312 0 357 200 130 0 chr4 41289433 41289533 -142999129 + MER58C DNA MER1_type 103 215 0 1351 135 4 82 chr4 41290589 41290833 -142997829 - AluSx SINE Alu -87 225 1 802 100 0 0 chr4 41291200 41291300 -142997362 + AluJb SINE Alu 133 232 -80 471 283 142 30 chr4 41291601 41291834 -142996828 + MIR SINE MIR 2 260 -2 808 190 46 0 chr4 41291912 41292086 -142996576 - MER53 DNA DNA -7 182 1 1459 151 4 54 chr4 41292099 41292323 -142996339 - AluJb SINE Alu -4 308 97 2275 111 0 0 chr4 41292323 41292620 -142996042 - AluSq SINE Alu -16 297 1 1459 151 4 54 chr4 41292620 41292653 -142996009 - AluJb SINE Alu -215 97 64 378 292 35 77 chr4 41292765 41293072 -142995590 + L2 LINE L2 2761 3058 -255 1380 77 0 0 chr4 41293072 41293242 -142995420 - AluSg/x SINE Alu -3 309 140 2123 117 3 0 chr4 41293404 41293710 -142994952 - AluSx SINE Alu 0 307 1 353 258 100 8 chr4 41293742 41293862 -142994800 + L2 LINE L2 3137 3267 -5 224 271 0 0 chr4 41294182 41294241 -142994421 + L2 LINE L2 3191 3249 -23 180 77 0 0 chr4 41294519 41294545 -142994117 + (A)n Simple_repeat Simple_repeat 1 26 0 202 154 0 39 chr4 41294836 41294888 -142993774 + CT-rich Low_complexity Low_complexity 1 50 0 1773 148 48 14 chr4 41294888 41295042 -142993620 - AluSx SINE Alu -12 300 153 2271 89 16 3 chr4 41295042 41295345 -142993317 - AluSq SINE Alu -6 307 1 1773 148 48 14 chr4 41295345 41295480 -142993182 - AluSx SINE Alu -159 153 1 662 288 34 5 chr4 41295499 41295704 -142992958 + MER46C DNA MER2_type 115 325 -13 284 263 25 0 chr4 41295729 41295809 -142992853 - MIR SINE MIR -157 105 24 273 71 0 0 chr4 41296148 41296190 -142992472 - Alu SINE Alu -1 307 266 2570 53 0 3 chr4 41296533 41296836 -142991826 + AluY SINE Alu 1 302 -9 400 306 21 72 chr4 41296849 41297084 -142991578 + MIR SINE MIR 40 262 0 192 271 0 0 chr4 41297094 41297142 -142991520 + MIR3 SINE MIR 161 208 0 2298 74 3 59 chr4 41297248 41297427 -142991235 - AluSx SINE Alu -7 305 150 2229 106 3 6 chr4 41297427 41297738 -142990924 - AluSg SINE Alu 0 310 1 2298 74 3 59 chr4 41297738 41297881 -142990781 - AluSx SINE Alu -162 150 1 1678 123 15 22 chr4 41298598 41298867 -142989795 - AluSx SINE Alu -2 310 44 1374 157 13 17 chr4 41298982 41299158 -142989504 - AluJo SINE Alu -2 310 134 1514 150 91 15 chr4 41299158 41299432 -142989230 - AluJb SINE Alu -17 295 1 1374 157 13 17 chr4 41299432 41299491 -142989171 - AluJo SINE Alu -178 134 76 1003 151 0 70 chr4 41299706 41299892 -142988770 - FRAM SINE Alu -5 171 1 2385 95 0 0 chr4 41300209 41300503 -142988159 - AluSc SINE Alu -13 296 3 1853 149 14 11 chr4 41300508 41300816 -142987846 - AluSx SINE Alu 0 309 1 201 121 0 0 chr4 41301071 41301104 -142987558 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 2214 78 7 20 chr4 41301287 41301583 -142987079 + AluSx SINE Alu 1 292 -20 1754 148 55 0 chr4 41301584 41301855 -142986807 + AluJb SINE Alu 1 286 -26 671 241 75 30 chr4 41302703 41302902 -142985760 + MER3 DNA MER1_type 1 208 -1 1843 172 0 7 chr4 41303818 41304109 -142984553 + AluJb SINE Alu 2 290 -22 752 154 0 70 chr4 41304112 41304255 -142984407 + AluJo SINE Alu 1 133 -169 315 164 0 0 chr4 41305001 41305062 -142983600 + (CA)n Simple_repeat Simple_repeat 2 62 0 906 117 0 29 chr4 41305145 41305282 -142983380 + AluJo SINE Alu 1 133 -169 2203 122 0 10 chr4 41305537 41305848 -142982814 - AluSx SINE Alu -4 308 1 961 201 6 0 chr4 41306296 41306460 -142982202 + AluJo SINE Alu 133 297 -15 1941 127 53 23 chr4 41306462 41306762 -142981900 + AluSx SINE Alu 1 309 -3 1969 120 17 21 chr4 41306861 41307141 -142981521 + AluSg SINE Alu 1 301 -9 267 0 29 0 chr4 41307141 41307175 -142981487 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 965 132 0 0 chr4 41308109 41308238 -142980424 + AluSq/x SINE Alu 1 129 -184 242 0 0 0 chr4 41308244 41308273 -142980389 - Alu SINE Alu -33 268 240 961 97 0 0 chr4 41308373 41308497 -142980165 + Alu SINE Alu 176 299 -12 453 256 78 96 chr4 41308535 41308805 -142979857 - L2 LINE L2 -3 3269 3005 2028 125 10 14 chr4 41309017 41309313 -142979349 - AluSq SINE Alu -17 296 2 578 327 67 7 chr4 41309321 41309621 -142979041 - L2 LINE L2 -573 2741 2424 853 244 5 10 chr4 41309656 41309857 -142978805 - MIR SINE MIR -43 219 20 2377 108 0 13 chr4 41309871 41310187 -142978475 - AluSx SINE Alu 0 312 1 259 285 24 85 chr4 41310214 41310379 -142978283 - L2 LINE L2 -890 2424 2270 342 96 0 0 chr4 41311411 41311463 -142977199 + MADE1 DNA Mariner 1 52 -28 781 219 12 0 chr4 41311550 41311719 -142976943 - MIR SINE MIR -43 219 49 294 114 0 0 chr4 41311719 41311763 -142976899 + MADE1 DNA Mariner 37 80 0 868 189 23 23 chr4 41312641 41312836 -142975826 + AluJo SINE Alu 108 302 0 1068 175 0 0 chr4 41312902 41313079 -142975583 + AluJb SINE Alu 131 307 -5 431 153 0 12 chr4 41313079 41313164 -142975498 + GA-rich Low_complexity Low_complexity 1 84 0 336 111 0 0 chr4 41313593 41313647 -142975015 + (GGGGA)n Simple_repeat Simple_repeat 4 57 0 482 225 25 67 chr4 41313647 41313826 -142974836 + L1ME LINE L1 5501 5673 -448 2284 91 3 0 chr4 41313952 41314258 -142974404 - AluSp SINE Alu 0 307 1 2299 106 0 3 chr4 41314277 41314578 -142974084 - AluSx SINE Alu -12 300 1 1836 167 10 16 chr4 41314694 41315006 -142973656 - AluJb SINE Alu -2 310 1 1625 162 27 3 chr4 41315031 41315328 -142973334 + L1MC1 LINE L1 6022 6325 -8 1995 146 0 3 chr4 41315328 41315615 -142973047 + AluSx SINE Alu 3 288 -24 668 97 0 0 chr4 41315617 41315710 -142972952 + AluSg/x SINE Alu 204 296 -13 1153 251 104 28 chr4 41315817 41316248 -142972414 - L2 LINE L2 0 3313 2850 381 326 0 30 chr4 41316317 41316449 -142972213 + MIR SINE MIR 16 143 -65 1629 104 9 0 chr4 41317179 41317399 -142971263 + AluSg/x SINE Alu 83 304 -6 327 257 153 42 chr4 41317499 41317760 -142970902 + L1M4 LINE L1 2213 2502 -3644 393 365 24 10 chr4 41317820 41318028 -142970634 + MIR SINE MIR 40 250 -12 393 194 81 100 chr4 41318299 41318459 -142970203 + LTR41 LTR ERVL 1 157 -616 2182 133 0 0 chr4 41318588 41318882 -142969780 - AluSx SINE Alu -18 294 1 389 224 44 78 chr4 41319025 41319230 -142969432 + LTR41 LTR ERVL 563 760 -13 2352 99 0 7 chr4 41319861 41320165 -142968497 + AluSx SINE Alu 1 302 -10 252 250 42 10 chr4 41320364 41320460 -142968202 + L1MC4a LINE L1 5973 6071 -1737 423 274 164 14 chr4 41320487 41320695 -142967967 + MIR SINE MIR 20 258 -4 2130 147 0 0 chr4 41320749 41321055 -142967607 + AluJb SINE Alu 1 306 -6 2034 115 48 0 chr4 41321228 41321523 -142967139 + AluSx SINE Alu 1 309 -3 2091 124 0 47 chr4 41321661 41321983 -142966679 + AluSq SINE Alu 1 307 -6 220 163 0 20 chr4 41322335 41322384 -142966278 + MIR SINE MIR 65 112 -150 2299 98 13 3 chr4 41322491 41322798 -142965864 - AluSq SINE Alu -3 310 1 1969 80 4 0 chr4 41324494 41324771 -142963891 - AluY SINE Alu 0 311 34 1097 83 0 0 chr4 41324780 41324913 -142963749 - AluSq/x SINE Alu -179 133 1 1693 174 6 29 chr4 41325002 41325313 -142963349 - AluSx SINE Alu 0 312 9 1903 150 24 3 chr4 41325377 41325671 -142962991 - AluJb SINE Alu -12 300 1 303 336 0 0 chr4 41325706 41325816 -142962846 - MIR SINE MIR 0 262 153 2150 110 10 10 chr4 41326300 41326610 -142962052 - AluSg SINE Alu 0 310 1 1096 64 0 83 chr4 41326859 41327015 -142961647 + AluSp SINE Alu 152 294 -19 1692 142 125 40 chr4 41328374 41328508 -142960154 + MLT1B LTR MaLR 6 127 -263 1901 141 0 11 chr4 41328508 41328828 -142959834 + AluJb SINE Alu 1 317 0 1692 142 125 40 chr4 41328828 41329045 -142959617 + MLT1B LTR MaLR 127 388 -2 947 119 77 0 chr4 41329120 41329263 -142959399 + AluJb SINE Alu 89 242 -70 338 216 26 9 chr4 41329652 41329768 -142958894 + (TA)n Simple_repeat Simple_repeat 2 119 0 231 280 0 32 chr4 41329778 41329871 -142958791 - L1MC4 LINE L1 -1339 6703 6614 256 147 0 59 chr4 41329871 41329939 -142958723 + (TATATG)n Simple_repeat Simple_repeat 4 67 0 1717 148 0 86 chr4 41329963 41330301 -142958361 - AluSx SINE Alu -1 311 3 447 197 33 16 chr4 41331081 41331205 -142957457 - MIR3 SINE MIR -3 205 75 332 299 84 7 chr4 41331223 41331377 -142957285 - MIR SINE MIR -8 254 89 2360 100 0 22 chr4 41331424 41331744 -142956918 - AluSq SINE Alu 0 313 1 273 239 219 7 chr4 41332807 41332962 -142955700 - MIR SINE MIR -55 207 20 506 221 6 76 chr4 41333012 41333184 -142955478 - MER63 DNA MER1_type -9 1052 893 350 70 0 0 chr4 41333180 41333223 -142955439 + THE1A LTR MaLR 313 355 0 * 11713 83 20 10 chr4 41333223 41333646 -142955016 + THE1B-int LTR MaLR 1 418 -1162 2259 112 3 3 chr4 41333646 41333949 -142954713 - AluSq SINE Alu -10 303 1 11713 83 20 10 chr4 41333949 41335089 -142953573 + THE1B-int LTR MaLR 418 1580 0 2320 107 48 20 chr4 41335089 41335443 -142953219 + THE1B LTR MaLR 1 364 0 3044 171 34 109 chr4 41335731 41335869 -142952793 + L1M4 LINE L1 4312 4459 -1687 853 160 0 0 chr4 41335869 41336000 -142952662 + FLAM_C SINE Alu 3 133 0 3044 171 34 109 chr4 41336000 41336322 -142952340 + L1M4 LINE L1 4459 4678 -1468 2232 105 0 3 chr4 41336322 41336649 -142952013 - AluSp SINE Alu 0 326 1 3044 171 34 109 chr4 41336649 41337068 -142951594 + L1M4 LINE L1 4678 5127 -1019 1924 151 0 29 chr4 41337068 41337380 -142951282 + AluJb SINE Alu 1 303 -9 2192 111 3 10 chr4 41338073 41338370 -142950292 - AluSq SINE Alu -18 295 1 645 81 18 18 chr4 41338898 41339009 -142949653 + (TTTC)n Simple_repeat Simple_repeat 2 112 0 790 154 29 15 chr4 41341664 41341800 -142946862 + MER2 DNA MER2_type 1 138 -207 674 129 0 10 chr4 41341804 41341905 -142946757 - FLAM_C SINE Alu -15 128 29 598 218 165 11 chr4 41341905 41342093 -142946569 + MER2 DNA MER2_type 124 340 -5 216 368 37 15 chr4 41342485 41342621 -142946041 - L2 LINE L2 -182 3090 2952 233 153 14 42 chr4 41343089 41343161 -142945501 + (TAA)n Simple_repeat Simple_repeat 3 72 0 1773 168 0 11 chr4 41343167 41343499 -142945163 + AluJo SINE Alu 1 329 0 294 286 150 0 chr4 41343509 41343642 -142945020 - MIR SINE MIR -37 225 73 226 175 0 0 chr4 41344130 41344170 -142944492 + MIR SINE MIR 106 145 -63 2917 152 52 4 chr4 41344189 41344671 -142943991 + Tigger7 DNA MER2_type 22 526 -1961 557 94 19 94 chr4 41344647 41344753 -142943909 + Tigger7 DNA MER2_type 2387 2484 -3 * 983 79 0 0 chr4 41344856 41344982 -142943680 + AluSg/x SINE Alu 187 312 0 2186 81 3 7 chr4 41345181 41345525 -142943137 + AluY SINE Alu 1 343 0 269 380 8 8 chr4 41345943 41346072 -142942590 + MER5B DNA MER1_type 5 133 -45 1706 153 60 0 chr4 41346085 41346367 -142942295 + AluJo SINE Alu 14 312 0 2604 55 0 0 chr4 41346644 41346952 -142941710 + AluY SINE Alu 1 308 -3 1682 141 43 16 chr4 41347211 41347467 -142941195 - AluSq SINE Alu -50 263 1 614 167 0 42 chr4 41347592 41347712 -142940950 + FLAM_C SINE Alu 29 143 0 234 160 0 0 chr4 41348976 41349026 -142939636 + (TGAA)n Simple_repeat Simple_repeat 1 50 0 1099 137 0 28 chr4 41349151 41349333 -142939329 + FRAM SINE Alu 1 176 0 1924 112 3 70 chr4 41349464 41349795 -142938867 - AluSp SINE Alu -4 309 1 192 77 0 0 chr4 41349954 41349980 -142938682 + (T)n Simple_repeat Simple_repeat 1 26 0 369 286 105 0 chr4 41350162 41350267 -142938395 + MIR SINE MIR 33 148 -114 857 121 0 0 chr4 41350269 41350385 -142938277 + AluSg/x SINE Alu 138 253 -59 1872 124 0 4 chr4 41350385 41350650 -142938012 + AluSx SINE Alu 41 304 -8 2291 95 0 23 chr4 41351387 41351692 -142936970 + AluSq SINE Alu 1 298 -15 1814 208 30 1 chr4 41352498 41352927 -142935735 + L1M3 LINE L1 4946 5384 -747 1573 166 15 25 chr4 41352973 41353322 -142935340 + L1M3 LINE L1 5353 5698 -476 269 236 46 52 chr4 41353623 41353763 -142934899 - L1MC4 LINE L1 -1 8041 7790 1618 108 5 0 chr4 41353776 41353998 -142934664 - AluSp SINE Alu -5 308 86 1821 112 93 0 chr4 41354153 41354431 -142934231 - AluSx SINE Alu -8 304 1 261 0 0 0 chr4 41354766 41354795 -142933867 + (TA)n Simple_repeat Simple_repeat 1 29 0 1672 172 0 56 chr4 41354855 41355158 -142933504 - AluJo SINE Alu -26 286 1 42 0 0 0 chr4 41355205 41355247 -142933415 + AT_rich Low_complexity Low_complexity 1 42 0 1561 139 98 8 chr4 41355247 41355513 -142933149 - AluJo SINE Alu -22 290 1 346 266 42 100 chr4 41355658 41355780 -142932882 + MIR SINE MIR 12 115 -147 2417 99 0 3 chr4 41355780 41356092 -142932570 - AluSq SINE Alu 0 313 3 346 266 42 100 chr4 41356092 41356210 -142932452 + MIR SINE MIR 115 238 -24 203 167 42 198 chr4 41356376 41356472 -142932190 - MER5B DNA MER1_type -6 172 92 315 0 0 0 chr4 41356487 41356522 -142932140 + (TG)n Simple_repeat Simple_repeat 2 36 0 2024 145 17 0 chr4 41357231 41357527 -142931135 - AluSq SINE Alu -12 301 1 269 206 39 0 chr4 41357688 41357745 -142930917 - MLT1K LTR MaLR -2 613 529 912 137 0 8 chr4 41357746 41357877 -142930785 + FLAM_A SINE Alu 1 130 -3 23 0 0 0 chr4 41358879 41358902 -142929760 + AT_rich Low_complexity Low_complexity 1 23 0 1156 127 0 0 chr4 41358904 41359062 -142929600 - AluSg/x SINE Alu -21 291 134 2105 97 42 0 chr4 41359062 41359350 -142929312 - AluSx SINE Alu -12 300 1 183 267 133 0 chr4 41359407 41359482 -142929180 - MIR SINE MIR -11 251 167 * 201 327 60 80 chr4 41359471 41359670 -142928992 + L2 LINE L2 3028 3222 -50 189 0 0 0 chr4 41360055 41360076 -142928586 + (CA)n Simple_repeat Simple_repeat 2 22 0 2024 132 23 3 chr4 41360462 41360765 -142927897 - AluJb SINE Alu -3 309 1 2281 222 23 57 chr4 41361153 41362080 -142926582 - L1 LINE L1 -790 5356 4497 1020 80 173 0 chr4 41362083 41362245 -142926417 - AluSc SINE Alu -7 302 113 3991 230 85 24 chr4 41362254 41363610 -142925052 - L1 LINE L1 -1656 4490 3052 775 257 55 47 chr4 41363805 41364058 -142924604 + MIR SINE MIR 5 259 -3 1954 108 26 52 chr4 41364507 41364812 -142923850 - AluSx SINE Alu -15 297 1 1966 137 20 7 chr4 41365260 41365560 -142923102 + AluSx SINE Alu 1 304 -8 822 134 9 0 chr4 41366222 41366334 -142922328 - AluSq/x SINE Alu -198 114 2 1649 183 3 36 chr4 41366754 41367060 -142921602 - AluJb SINE Alu -16 296 1 195 114 0 0 chr4 41367807 41367842 -142920820 + (A)n Simple_repeat Simple_repeat 1 35 0 234 177 0 97 chr4 41368600 41368662 -142920000 - L1ME4a LINE L1 -84 6037 5982 406 282 126 10 chr4 41368801 41369007 -142919655 - L1ME4a LINE L1 -334 5787 5558 258 32 0 0 chr4 41369098 41369129 -142919533 + (TATTG)n Simple_repeat Simple_repeat 2 32 0 1111 133 0 0 chr4 41369129 41369287 -142919375 - AluSg/x SINE Alu -19 291 134 212 294 87 0 chr4 41369468 41369560 -142919102 + L2 LINE L2 3214 3313 0 2017 143 3 7 chr4 41370283 41370591 -142918071 + AluSx SINE Alu 1 307 -5 959 112 0 8 chr4 41370850 41370984 -142917678 + AluSx SINE Alu 1 133 -180 2217 116 7 0 chr4 41370984 41371277 -142917385 + AluSx SINE Alu 1 295 -17 369 58 0 0 chr4 41371335 41371387 -142917275 + (TAA)n Simple_repeat Simple_repeat 2 53 0 1254 130 0 0 chr4 41371387 41371564 -142917098 + AluSx SINE Alu 126 302 -8 716 250 54 67 chr4 41372432 41372556 -142916106 + MIR SINE MIR 21 142 -120 2258 119 3 0 chr4 41372556 41372858 -142915804 + AluSq SINE Alu 1 303 -10 716 250 54 67 chr4 41372858 41372957 -142915705 + MIR SINE MIR 142 241 -21 758 171 16 0 chr4 41373035 41373158 -142915504 + FLAM_A SINE Alu 2 126 -7 1633 182 33 4 chr4 41373198 41373514 -142915148 - AluJb SINE Alu 0 324 1 782 183 24 0 chr4 41374049 41374175 -142914487 + FLAM_C SINE Alu 1 129 -4 2530 71 3 0 chr4 41374520 41374828 -142913834 + AluSp SINE Alu 1 309 -4 1181 104 0 0 chr4 41375632 41375796 -142912866 - AluSx SINE Alu -10 300 137 643 95 0 0 chr4 41375797 41375881 -142912781 - AluSx SINE Alu -227 85 2 428 243 29 10 chr4 41376582 41376685 -142911977 - MIR SINE MIR -10 252 148 650 340 14 5 chr4 41379491 41379706 -142908956 + MIR SINE MIR 46 262 0 2068 115 49 3 chr4 41380253 41380541 -142908121 - AluSq SINE Alu -11 302 2 390 197 13 0 chr4 41380759 41380835 -142907827 + MER116 DNA Mariner 3 79 -1 254 358 53 7 chr4 41380965 41381116 -142907546 - L2 LINE L2 -437 2877 2720 536 104 13 0 chr4 41381126 41381203 -142907459 - AluSp/q SINE Alu -15 298 221 216 0 0 0 chr4 41381404 41381428 -142907234 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 294 159 0 0 chr4 41381429 41381473 -142907189 - L2 LINE L2 -14 3258 3215 402 302 22 14 chr4 41381930 41382069 -142906593 + MIR SINE MIR 7 146 -116 736 246 92 10 chr4 41382072 41382279 -142906383 - MIR SINE MIR -2 260 37 323 264 46 0 chr4 41382283 41382370 -142906292 + MIR SINE MIR 164 254 -8 2084 157 0 3 chr4 41382390 41382703 -142905959 + AluJo SINE Alu 1 312 0 2052 90 0 36 chr4 41383543 41383663 -142904999 + AluSg1 SINE Alu 13 136 -166 2521 71 0 3 chr4 41383663 41383974 -142904688 + AluY SINE Alu 1 310 -1 2052 90 0 36 chr4 41383974 41384153 -142904509 + AluSg1 SINE Alu 136 302 0 300 83 0 0 chr4 41384201 41384249 -142904413 + (TG)n Simple_repeat Simple_repeat 2 49 0 471 269 85 0 chr4 41384516 41384646 -142904016 + MIR SINE MIR 19 159 -103 2023 129 0 10 chr4 41385621 41385916 -142902746 - AluSx SINE Alu -20 292 1 2160 113 3 26 chr4 41386246 41386556 -142902106 + AluSx SINE Alu 1 303 -9 716 250 54 67 chr4 41387425 41387549 -142901113 + MIR SINE MIR 21 142 -120 2249 120 3 0 chr4 41387549 41387850 -142900812 + AluSq SINE Alu 1 302 -11 716 250 54 67 chr4 41387850 41387949 -142900713 + MIR SINE MIR 142 241 -21 786 156 16 0 chr4 41388027 41388149 -142900513 + FLAM_A SINE Alu 2 125 -8 692 171 81 0 chr4 41388189 41388341 -142900321 - AluJb SINE Alu 0 325 165 2163 112 3 0 chr4 41388718 41389013 -142899649 + AluSx SINE Alu 1 296 -16 2376 81 0 43 chr4 41389328 41389650 -142899012 + AluY SINE Alu 1 308 -3 977 128 0 0 chr4 41390409 41390542 -142898120 + FLAM_C SINE Alu 1 133 0 584 68 39 0 chr4 41390543 41390646 -142898016 + (TA)n Simple_repeat Simple_repeat 2 108 0 422 331 70 6 chr4 41390665 41390822 -142897840 - MIR3 SINE MIR -17 191 25 350 271 78 46 chr4 41393120 41393329 -142895333 - MIR SINE MIR -42 220 10 542 127 0 0 chr4 41393368 41393447 -142895215 + Charlie5 DNA MER1_type 21 99 -2513 264 263 12 25 chr4 41393797 41393877 -142894785 - L1ME LINE L1 -249 5872 5794 729 253 94 37 chr4 41394092 41394337 -142894325 + MIR SINE MIR 2 260 -2 899 130 20 14 chr4 41394600 41394746 -142893916 + BC200 scRNA scRNA 1 147 -53 329 247 120 53 chr4 41395252 41395402 -142893260 + L1ME3 LINE L1 5562 5721 -400 2010 115 38 60 chr4 41395563 41395910 -142892752 - MER44D DNA MER2_type 0 609 1 2389 50 40 13 chr4 41395930 41396229 -142892433 + AluY SINE Alu 1 307 -4 350 205 164 0 chr4 41396262 41396384 -142892278 + L1ME4a LINE L1 5979 6120 -1 1884 114 3 63 chr4 41396691 41397006 -142891656 + AluSx SINE Alu 1 296 -16 239 135 0 0 chr4 41397010 41397047 -142891615 - Alu SINE Alu -65 237 201 2052 149 7 3 chr4 41397298 41397607 -142891055 + AluSx SINE Alu 1 310 -2 250 318 70 0 chr4 41398449 41398578 -142890084 - MER117 DNA MER1_type -48 149 12 2142 119 0 3 chr4 41398609 41398903 -142889759 - AluSx SINE Alu -18 294 2 206 283 228 0 chr4 41399211 41399303 -142889359 + MIR SINE MIR 29 141 -67 2110 131 6 13 chr4 41399317 41399630 -142889032 + AluSx SINE Alu 1 311 -1 361 335 82 19 chr4 41400264 41400422 -142888240 + MIR SINE MIR 43 210 -52 2378 80 0 0 chr4 41401133 41401421 -142887241 + AluSg1 SINE Alu 1 288 -21 1296 89 0 0 chr4 41401540 41401708 -142886954 + AluSp SINE Alu 131 298 -15 188 289 154 19 chr4 41401845 41401949 -142886713 + MIR SINE MIR 97 214 -48 1452 232 40 19 chr4 41402109 41402484 -142886178 + L1ME3 LINE L1 5776 6158 -4 2283 85 3 0 chr4 41402505 41402817 -142885845 + AluSx SINE Alu 1 313 0 811 153 0 0 chr4 41403093 41403204 -142885458 + FLAM_C SINE Alu 13 123 -20 2320 66 10 20 chr4 41403226 41403530 -142885132 + AluY SINE Alu 1 301 -10 2239 121 3 3 chr4 41403532 41403845 -142884817 + AluSq SINE Alu 1 313 0 251 361 161 28 chr4 41404048 41404228 -142884434 - L2 LINE L2 -50 3222 3019 907 116 23 8 chr4 41404419 41404548 -142884114 + AluSq/x SINE Alu 1 131 -182 1941 124 72 0 chr4 41405303 41405594 -142883068 + AluSx SINE Alu 1 312 0 2233 92 27 3 chr4 41405770 41406063 -142882599 + AluSx SINE Alu 2 301 -11 2328 110 3 0 chr4 41406063 41406402 -142882260 + AluSx SINE Alu 1 340 0 225 169 26 117 chr4 41406783 41406860 -142881802 - L1M3c LINE L1 -5109 1032 963 2380 92 0 0 chr4 41407344 41407648 -142881014 - AluSq SINE Alu -9 304 1 195 42 0 0 chr4 41409240 41409264 -142879398 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 314 164 60 0 chr4 41409295 41409362 -142879300 + MIR SINE MIR 71 141 -121 211 281 0 18 chr4 41409781 41409838 -142878824 + CT-rich Low_complexity Low_complexity 3 58 0 2551 77 3 0 chr4 41409881 41410192 -142878470 - AluSx SINE Alu 0 312 1 276 130 0 0 chr4 41410728 41410774 -142877888 + (TTCC)n Simple_repeat Simple_repeat 1 46 0 2070 132 10 7 chr4 41410774 41411069 -142877593 - AluSx SINE Alu -16 296 1 1839 165 45 15 chr4 41411230 41411295 -142877367 - MER2 DNA MER2_type 0 345 283 374 50 33 0 chr4 41411295 41411355 -142877307 + L1MA3 LINE L1 6244 6305 0 1839 165 45 15 chr4 41411355 41411623 -142877039 - MER2 DNA MER2_type -62 283 2 21 0 0 0 chr4 41411669 41411690 -142876972 + AT_rich Low_complexity Low_complexity 1 21 0 2237 103 3 25 chr4 41411782 41412101 -142876561 - AluSx SINE Alu 0 312 1 248 212 195 42 chr4 41412171 41412289 -142876373 - MIR3 SINE MIR -71 137 2 1189 94 198 0 chr4 41412329 41412521 -142876141 + MER30 DNA MER1_type 1 230 0 1569 161 7 61 chr4 41412540 41412850 -142875812 + AluJb SINE Alu 3 295 -17 2444 84 3 0 chr4 41412922 41413220 -142875442 - AluSp SINE Alu -13 300 2 2441 84 0 7 chr4 41413284 41413592 -142875070 - AluSc SINE Alu -3 306 1 1691 193 165 85 chr4 41414510 41414812 -142873850 + Charlie1a DNA MER1_type 1 277 -2484 2237 105 13 16 chr4 41414812 41415126 -142873536 - AluSq SINE Alu 0 313 1 1691 193 165 85 chr4 41415126 41415436 -142873226 + Charlie1a DNA MER1_type 277 662 -793 295 147 213 0 chr4 41415412 41415487 -142873175 + MER66A LTR ERV1 246 336 -142 * 21 36 0 0 chr4 41415487 41415515 -142873147 + AT_rich Low_complexity Low_complexity 1 28 0 1769 186 9 3 chr4 41415522 41415848 -142872814 + Charlie1a DNA MER1_type 645 972 -483 245 121 0 0 chr4 41415848 41415881 -142872781 + AluSx SINE Alu 1 33 -100 2290 114 0 0 chr4 41416073 41416380 -142872282 - AluY SINE Alu -4 307 1 2277 107 0 3 chr4 41416555 41416853 -142871809 + AluSx SINE Alu 9 305 -7 233 254 34 0 chr4 41416866 41416925 -142871737 + CT-rich Low_complexity Low_complexity 3 63 0 548 201 58 58 chr4 41417753 41417779 -142870883 - L1ME2 LINE L1 -9 6155 6130 2238 110 0 0 chr4 41417779 41418070 -142870592 + AluSx SINE Alu 1 291 -21 548 201 58 58 chr4 41418070 41418217 -142870445 - L1ME2 LINE L1 -33 6131 5982 2302 66 33 0 chr4 41418534 41418808 -142869854 + AluSg SINE Alu 7 289 -21 1357 94 0 11 chr4 41418808 41418989 -142869673 + AluSg/x SINE Alu 134 312 0 236 219 158 12 chr4 41419019 41419101 -142869561 - MIR SINE MIR -66 196 103 2106 105 30 30 chr4 41419106 41419401 -142869261 + AluSx SINE Alu 1 295 -17 2131 126 3 0 chr4 41419532 41419826 -142868836 + AluSq SINE Alu 1 295 -18 269 319 147 0 chr4 41419977 41420093 -142868569 + L2 LINE L2 2623 2755 -559 319 273 91 9 chr4 41420529 41420639 -142868023 + L2 LINE L2 3154 3272 0 236 158 0 0 chr4 41420763 41420801 -142867861 + Charlie8 DNA MER1_type 221 258 -2159 2046 190 3 11 chr4 41420907 41421280 -142867382 - MLT1B LTR MaLR 0 390 21 2092 99 4 0 chr4 41422069 41422341 -142866321 + AluSq SINE Alu 23 295 -18 438 269 119 26 chr4 41422520 41422713 -142865949 - MIR SINE MIR 0 262 52 1863 139 0 4 chr4 41422791 41423113 -142865549 - AluSq SINE Alu 0 340 20 383 188 0 0 chr4 41423113 41423177 -142865485 - AluJo SINE Alu -160 142 79 191 310 102 32 chr4 41423407 41423594 -142865068 - L2 LINE L2 -463 2851 2652 2085 109 17 3 chr4 41423595 41423889 -142864773 + AluSg SINE Alu 1 298 -12 266 270 0 0 chr4 41423910 41423973 -142864689 + MIR SINE MIR 88 150 -112 241 250 36 60 chr4 41423969 41424053 -142864609 + L2 LINE L2 3188 3269 -3 * 2047 149 0 3 chr4 41424482 41424790 -142863872 + AluJb SINE Alu 1 307 -5 379 336 0 14 chr4 41425117 41425263 -142863399 + MIR SINE MIR 23 166 -96 764 209 109 5 chr4 41425280 41425490 -142863172 + L1ME3A LINE L1 5939 6170 0 2712 106 11 0 chr4 41426392 41426752 -142861910 - THE1B LTR MaLR 0 364 1 2318 106 0 3 chr4 41427707 41428008 -142860654 - AluSx SINE Alu -12 300 1 566 264 38 13 chr4 41428008 41428167 -142860495 - MIR SINE MIR -68 194 32 1105 75 0 0 chr4 41428598 41428732 -142859930 + AluY SINE Alu 1 134 -177 264 91 0 0 chr4 41428832 41428876 -142859786 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 2064 120 18 0 chr4 41428883 41429159 -142859503 - AluSx SINE Alu -31 281 1 2185 110 6 35 chr4 41429167 41429484 -142859178 - AluSx SINE Alu -4 308 1 416 174 12 35 chr4 41429484 41429561 -142859101 + Tigger5 DNA MER2_type 2247 2323 0 443 236 43 36 chr4 41429561 41429701 -142858961 - MER3 DNA MER1_type -68 141 1 1212 68 0 0 chr4 41429706 41429911 -142858751 - AluYa8 SINE Alu 0 337 133 1822 111 66 15 chr4 41429912 41430183 -142858479 - AluSx SINE Alu -5 307 23 2080 101 20 10 chr4 41430280 41430578 -142858084 - AluSc SINE Alu -8 301 1 182 176 0 0 chr4 41430690 41430724 -142857938 + L3 LINE CR1 711 744 -833 2087 159 118 20 chr4 41430753 41431143 -142857519 + MSTA LTR MaLR 1 428 0 3509 162 32 2 chr4 41431143 41431742 -142856920 + MSTA-int LTR MaLR 1 617 -1034 547 118 0 0 chr4 41431843 41431919 -142856743 + AluS SINE Alu 220 295 -17 699 239 35 80 chr4 41432048 41432249 -142856413 - MER58A DNA MER1_type -26 198 7 2033 159 0 6 chr4 41432358 41432672 -142855990 - AluJb SINE Alu 0 312 1 233 37 0 0 chr4 41432835 41432862 -142855800 + (T)n Simple_repeat Simple_repeat 1 27 0 664 293 36 28 chr4 41432972 41433221 -142855441 - L1MEc LINE L1 -6115 281 31 269 231 31 0 chr4 41434745 41434810 -142853852 - MER103 DNA DNA -25 141 75 183 42 0 0 chr4 41435063 41435087 -142853575 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1602 55 5 32 chr4 41435090 41435310 -142853352 - AluY SINE Alu -20 291 78 1559 104 0 28 chr4 41435632 41435844 -142852818 - AluY SINE Alu -105 206 1 307 100 0 0 chr4 41435844 41435884 -142852778 + MSTA LTR MaLR 389 428 0 189 314 167 19 chr4 41435885 41436041 -142852621 + MIR SINE MIR 54 232 -30 402 360 118 22 chr4 41436192 41436656 -142852006 + L3 LINE CR1 794 1302 -275 1005 150 0 0 chr4 41486899 41487046 -142801616 + AluSg/x SINE Alu 154 300 -12 2244 116 0 0 chr4 41487579 41487880 -142800782 - AluSx SINE Alu -7 305 5 236 109 0 43 chr4 41488142 41488188 -142800474 + (GAAAA)n Simple_repeat Simple_repeat 2 45 0 1077 89 0 20 chr4 41488192 41488338 -142800324 + AluSq/x SINE Alu 1 143 -170 280 98 0 0 chr4 41488338 41488379 -142800283 + AluSq/x SINE Alu 95 135 -168 407 58 0 0 chr4 41488379 41488431 -142800231 + AluSc SINE Alu 82 133 -176 1586 113 0 5 chr4 41488431 41488643 -142800019 + AluSg/x SINE Alu 82 292 -18 264 300 80 10 chr4 41488738 41488838 -142799824 + MIR3 SINE MIR 70 176 -32 1610 185 3 23 chr4 41488862 41489170 -142799492 - AluJb SINE Alu -10 302 1 809 150 0 34 chr4 41489615 41489762 -142798900 + AluSg/x SINE Alu 171 312 0 1971 126 18 4 chr4 41489770 41490047 -142798615 + AluSq SINE Alu 1 281 -32 243 0 0 0 chr4 41490047 41490074 -142798588 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 268 311 47 58 chr4 41490658 41490848 -142797814 - L2 LINE L2 -10 3262 3075 518 139 78 0 chr4 41490926 41490947 -142797715 - L1MB5 LINE L1 -2 6172 6154 1818 159 14 3 chr4 41490947 41491237 -142797425 - AluSx SINE Alu -19 293 1 518 139 78 0 chr4 41491237 41491330 -142797332 - L1MB5 LINE L1 -20 6154 6049 1326 205 4 0 chr4 41491330 41491569 -142797093 - AluJb SINE Alu -7 305 66 2174 93 0 4 chr4 41491669 41491938 -142796724 - AluSg SINE Alu -41 269 2 2084 103 7 3 chr4 41491996 41492301 -142796361 - AluSx SINE Alu 0 306 1 302 304 43 22 chr4 41492907 41493045 -142795617 + L2 LINE L2 2596 2736 -578 1860 131 29 4 chr4 41493072 41493371 -142795291 + AluJb SINE Alu 1 306 0 715 180 0 0 chr4 41493593 41493715 -142794947 + FLAM_C SINE Alu 5 126 -17 1889 140 4 0 chr4 41493851 41494123 -142794539 - AluSx SINE Alu -39 273 1 184 296 87 35 chr4 41494160 41494332 -142794330 + L2 LINE L2 2771 2951 -363 22 35 0 0 chr4 41494519 41494548 -142794114 + AT_rich Low_complexity Low_complexity 1 29 0 2812 135 8 70 chr4 41494684 41494743 -142793919 + L1MC1 LINE L1 5835 5896 -437 2206 121 3 3 chr4 41494743 41495050 -142793612 + AluSx SINE Alu 1 307 -5 2812 135 8 70 chr4 41495050 41495522 -142793140 + L1MC1 LINE L1 5896 6333 0 460 241 6 6 chr4 41495525 41495695 -142792967 + (TA)n Simple_repeat Simple_repeat 2 171 0 2139 123 3 3 chr4 41495767 41496067 -142792595 + AluSx SINE Alu 3 302 -10 359 125 66 75 chr4 41496150 41496313 -142792349 - MER3 DNA MER1_type -1 208 5 2211 122 0 0 chr4 41496465 41496759 -142791903 - AluSx SINE Alu -18 294 1 831 122 0 14 chr4 41497004 41497143 -142791519 - Alu SINE Alu 0 310 174 635 115 0 10 chr4 41497243 41497339 -142791323 - AluSq/x SINE Alu -180 133 39 32 48 0 48 chr4 41497492 41497546 -142791116 + AT_rich Low_complexity Low_complexity 1 51 -28 2490 43 3 13 chr4 41497546 41497847 -142790815 + AluY SINE Alu 14 311 0 32 48 0 48 chr4 41497847 41497875 -142790787 + AT_rich Low_complexity Low_complexity 51 79 0 1382 176 38 22 chr4 41497995 41498091 -142790571 + AluJo SINE Alu 40 133 -179 2462 88 3 0 chr4 41498091 41498399 -142790263 + AluSp SINE Alu 1 309 -4 1382 176 38 22 chr4 41498399 41498569 -142790093 + AluJo SINE Alu 133 310 -2 1328 131 5 0 chr4 41499094 41499285 -142789377 - AluSg/x SINE Alu -3 307 116 2551 4 0 0 chr4 41499388 41499657 -142789005 - AluYa5 SINE Alu -42 269 1 2358 108 0 0 chr4 41500030 41500337 -142788325 - AluSx SINE Alu -4 308 2 313 167 61 0 chr4 41500640 41500706 -142787956 - MIR SINE MIR -91 171 102 1632 87 59 5 chr4 41500907 41501126 -142787536 - AluSx SINE Alu -21 291 61 1258 204 24 8 chr4 41501214 41501469 -142787193 - MER58 DNA MER1_type -81 260 2 2338 99 0 3 chr4 41501904 41502206 -142786456 + AluSx SINE Alu 1 301 -11 392 191 17 98 chr4 41502206 41502300 -142786362 - MER113 DNA MER1_type? -345 176 101 1932 138 0 0 chr4 41502300 41502582 -142786080 + AluSx SINE Alu 30 311 -1 392 191 17 98 chr4 41502582 41502660 -142786002 - MER113 DNA MER1_type? -420 101 18 641 227 182 0 chr4 41502927 41503130 -142785532 + MIR SINE MIR 2 241 -21 277 141 0 113 chr4 41503160 41503231 -142785431 + AluSq/x SINE Alu 84 146 -156 719 158 0 0 chr4 41503231 41503345 -142785317 + AluJo/FRAM SINE Alu 176 289 -23 1578 143 18 22 chr4 41503449 41503722 -142784940 + L1MB7 LINE L1 5738 6009 -175 1862 141 0 33 chr4 41504001 41504307 -142784355 + AluJb SINE Alu 1 296 -16 29 28 0 0 chr4 41504504 41504540 -142784122 + AT_rich Low_complexity Low_complexity 1 36 0 2333 108 0 0 chr4 41504615 41504921 -142783741 - AluY SINE Alu -5 306 1 2175 119 0 10 chr4 41504924 41505226 -142783436 - AluSx SINE Alu -13 299 1 367 267 140 7 chr4 41505233 41505383 -142783279 - MIR SINE MIR -11 251 82 1964 178 81 35 chr4 41505588 41506072 -142782590 - LTR54 LTR ERV1 0 510 5 735 191 0 0 chr4 41506072 41506198 -142782464 - FLAM_A SINE Alu -16 126 1 1129 61 0 0 chr4 41506431 41506563 -142782099 - AluY SINE Alu -179 132 1 1738 60 0 19 chr4 41506565 41506780 -142781882 - AluSg SINE Alu -99 211 1 606 276 98 14 chr4 41506780 41507055 -142781607 - L2 LINE L2 -559 2755 2458 3053 87 7 39 chr4 41507062 41507332 -142781330 + L1PB2 LINE L1 5703 5953 -198 2149 120 7 7 chr4 41507332 41507633 -142781029 + AluSg SINE Alu 1 301 -9 3053 87 7 39 chr4 41507633 41507823 -142780839 + L1PB2 LINE L1 5953 6148 -3 2434 100 0 0 chr4 41508339 41508648 -142780014 + AluSg SINE Alu 1 309 -1 468 243 167 65 chr4 41508777 41509040 -142779622 + L2 LINE L2 3023 3312 -1 195 324 14 0 chr4 41509035 41509106 -142779556 + MIR SINE MIR 183 254 -8 * 30 45 0 0 chr4 41509181 41509225 -142779437 + AT_rich Low_complexity Low_complexity 1 44 0 1386 126 0 24 chr4 41509328 41509534 -142779128 - AluSx SINE Alu -111 201 1 1417 176 118 14 chr4 41509603 41509773 -142778889 - Charlie4a DNA MER1_type -1578 383 232 1914 164 0 23 chr4 41509773 41510077 -142778585 - AluJb SINE Alu -14 298 2 1417 176 118 14 chr4 41510077 41510253 -142778409 - Charlie4a DNA MER1_type -1729 232 1 2482 62 0 0 chr4 41510387 41510692 -142777970 - AluY SINE Alu -6 305 1 2213 66 21 3 chr4 41511316 41511603 -142777059 - AluSx SINE Alu -20 292 1 380 130 0 0 chr4 41512085 41512161 -142776501 + AluSp/q SINE Alu 232 307 0 1865 123 13 26 chr4 41512346 41512648 -142776014 - AluSx SINE Alu -14 298 1 317 257 54 0 chr4 41513880 41513954 -142774708 + L2 LINE L2 3230 3307 -6 2142 96 4 0 chr4 41514113 41514429 -142774233 + AluSg SINE Alu 1 317 0 892 158 0 0 chr4 41514709 41514848 -142773814 - FLAM_C SINE Alu -4 139 1 1675 122 46 0 chr4 41514863 41515125 -142773537 - AluSx SINE Alu 0 312 39 329 200 21 74 chr4 41515225 41515320 -142773342 - AluS SINE Alu -213 90 1 187 262 0 0 chr4 41515463 41515505 -142773157 - MIR SINE MIR -16 246 205 184 311 96 53 chr4 41515631 41515840 -142772822 - L2 LINE L2 -226 3046 2829 2229 109 0 0 chr4 41515898 41516210 -142772452 - AluSx SINE Alu 0 312 1 192 321 89 48 chr4 41516238 41516633 -142772029 - L2 LINE L2 -654 2660 2250 250 287 141 75 chr4 41516978 41517005 -142771657 + L2 LINE L2 2732 2756 -557 329 0 24 0 chr4 41517005 41517046 -142771616 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 1832 155 3 0 chr4 41517051 41517341 -142771321 - AluJb SINE Alu -21 291 1 250 287 141 75 chr4 41517341 41517711 -142770951 + L2 LINE L2 2759 3152 -161 591 309 81 13 chr4 41518282 41518307 -142770355 - L2 LINE L2 -179 3134 3112 2114 117 3 0 chr4 41518307 41518615 -142770047 + AluSx SINE Alu 1 309 -3 591 309 81 13 chr4 41518615 41518896 -142769766 - L2 LINE L2 -201 3112 2807 221 350 29 10 chr4 41519382 41519485 -142769177 + MIR SINE MIR 44 148 -114 1467 229 56 74 chr4 41519494 41519930 -142768732 - MLT1E3 LTR MaLR -2 622 169 839 153 0 0 chr4 41519930 41520054 -142768608 - FLAM_C SINE Alu -6 127 4 1467 229 56 74 chr4 41520054 41520221 -142768441 - MLT1E3 LTR MaLR -455 169 1 2148 92 7 0 chr4 41520384 41520677 -142767985 + AluSx SINE Alu 2 296 -16 628 106 0 0 chr4 41521084 41521169 -142767493 - AluY SINE Alu -232 86 2 2066 201 16 19 chr4 41521864 41522062 -142766600 + MER63B DNA MER1_type 1 198 -864 2065 129 0 0 chr4 41522062 41522364 -142766298 + AluSx SINE Alu 1 302 -10 2165 101 0 3 chr4 41522366 41522662 -142766000 + AluSx SINE Alu 1 295 -17 2066 201 16 19 chr4 41522662 41522887 -142765775 + MER63B DNA MER1_type 199 426 -10 638 295 40 40 chr4 41523183 41523434 -142765228 - MIR SINE MIR -1 261 11 629 121 379 21 chr4 41523708 41523848 -142764814 + AluJo SINE Alu 112 301 -11 1802 143 24 3 chr4 41523848 41524142 -142764520 + AluSx SINE Alu 1 300 -12 2463 57 0 0 chr4 41524307 41524607 -142764055 - AluY SINE Alu -11 300 1 1116 130 0 6 chr4 41524629 41524798 -142763864 - FRAM SINE Alu -9 167 1 246 239 39 67 chr4 41524806 41524986 -142763676 + L1MC4a LINE L1 5765 5939 -1869 1890 136 0 7 chr4 41525166 41525452 -142763210 + AluJb SINE Alu 14 297 -15 577 111 11 0 chr4 41525490 41525580 -142763082 + MER53 DNA DNA 99 189 0 29 28 0 0 chr4 41525783 41525819 -142762843 + AT_rich Low_complexity Low_complexity 1 36 0 745 289 45 12 chr4 41526556 41526798 -142761864 + LTR33 LTR ERVL 38 287 -234 2061 109 16 13 chr4 41526800 41527111 -142761551 - AluSx SINE Alu 0 312 1 22 80 0 0 chr4 41527352 41527402 -142761260 + AT_rich Low_complexity Low_complexity 1 50 0 30 19 0 39 chr4 41527513 41527544 -142761118 + AT_rich Low_complexity Low_complexity 1 31 -19 717 167 18 0 chr4 41527544 41527658 -142761004 - FLAM_A SINE Alu -17 116 1 30 19 0 39 chr4 41527658 41527678 -142760984 + AT_rich Low_complexity Low_complexity 31 50 0 22 96 0 0 chr4 41527723 41527775 -142760887 + AT_rich Low_complexity Low_complexity 1 52 0 21 36 0 0 chr4 41528184 41528212 -142760450 + AT_rich Low_complexity Low_complexity 1 28 0 2596 29 0 7 chr4 41528913 41529223 -142759439 - AluY SINE Alu -3 308 1 195 42 0 0 chr4 41529487 41529511 -142759151 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2127 113 0 0 chr4 41529511 41529795 -142758867 - AluSx SINE Alu -28 284 1 1219 167 0 22 chr4 41529866 41530088 -142758574 - AluJb SINE Alu -45 267 51 231 205 0 0 chr4 41530097 41530136 -142758526 - MIR SINE MIR -4 258 220 862 206 0 11 chr4 41530139 41530323 -142758339 - FRAM SINE Alu -1 175 1 322 211 161 21 chr4 41530323 41530442 -142758220 - MIR SINE MIR -62 146 58 1277 210 15 4 chr4 41530480 41530742 -142757920 - AluJo SINE Alu -47 265 1 1143 144 0 93 chr4 41531204 41531440 -142757222 + MER20 DNA MER1_type 4 217 -2 764 100 8 25 chr4 41531474 41531594 -142757068 - FLAM_C SINE Alu 0 143 26 1165 141 0 0 chr4 41531721 41531898 -142756764 - AluSg/x SINE Alu -2 308 132 1868 122 7 23 chr4 41531898 41532201 -142756461 - AluSx SINE Alu -14 298 1 960 272 66 25 chr4 41532263 41532733 -142755929 - L1MEc LINE L1 -4863 1250 762 745 175 0 44 chr4 41532733 41532870 -142755792 - FLAM_A SINE Alu -1 132 2 1072 146 5 60 chr4 41532872 41533040 -142755622 - AluJo SINE Alu -17 295 138 2072 129 0 7 chr4 41533040 41533349 -142755313 - AluSc SINE Alu -2 307 1 1072 146 5 60 chr4 41533349 41533379 -142755283 - AluJo SINE Alu -174 138 108 306 0 0 0 chr4 41533379 41533413 -142755249 + (TTA)n Simple_repeat Simple_repeat 2 35 0 2066 104 13 0 chr4 41533417 41533715 -142754947 - AluSx SINE Alu -10 302 1 1657 157 20 7 chr4 41533779 41534072 -142754590 - AluJb SINE Alu -13 299 3 344 235 5 103 chr4 41534075 41534288 -142754374 - L1MEc LINE L1 -5341 776 585 895 179 5 77 chr4 41534516 41534711 -142753951 - MER5A DNA MER1_type -8 181 1 1718 111 13 70 chr4 41534736 41535051 -142753611 - AluJb SINE Alu -15 297 1 437 345 64 77 chr4 41535237 41535507 -142753155 - L1MEc LINE L1 -5931 465 199 2137 92 3 0 chr4 41535507 41535817 -142752845 + AluY SINE Alu 1 311 0 437 345 64 77 chr4 41535817 41535936 -142752726 - L1MEc LINE L1 -6197 199 80 241 270 48 0 chr4 41536049 41536112 -142752550 + L2 LINE L2 3248 3313 0 2172 112 3 0 chr4 41536287 41536592 -142752070 + AluSp SINE Alu 1 306 -7 2086 103 23 7 chr4 41536628 41536930 -142751732 + AluSx SINE Alu 1 307 -5 288 323 10 0 chr4 41536935 41537034 -142751628 + MIR SINE MIR 56 155 -107 240 375 0 0 chr4 41537119 41537207 -142751455 + MIR SINE MIR 35 122 -86 474 191 140 59 chr4 41537396 41537532 -142751130 - L2 LINE L2 -9 3304 3158 2182 92 6 13 chr4 41537535 41537849 -142750813 + AluSx SINE Alu 1 312 0 896 254 11 128 chr4 41537885 41538013 -142750649 + MER21B LTR ERV1 13 154 -709 1467 155 53 50 chr4 41538013 41538316 -142750346 - AluJo SINE Alu -8 304 1 896 254 11 128 chr4 41538316 41538569 -142750093 + MER21B LTR ERV1 154 349 -514 984 228 69 13 chr4 41538623 41538855 -142749807 + MER21B LTR ERV1 355 599 -264 1562 123 0 0 chr4 41539033 41539252 -142749410 + AluSx SINE Alu 1 219 -93 686 237 82 27 chr4 41539304 41539523 -142749139 + MER21B LTR ERV1 612 842 -21 515 288 120 32 chr4 41539546 41539855 -142748807 - L2 LINE L2 -172 3141 2806 568 218 36 0 chr4 41539879 41539989 -142748673 + MER81 DNA DNA 1 114 0 655 68 23 0 chr4 41540058 41540146 -142748516 - AluSp/q SINE Alu -18 295 206 1432 294 3 71 chr4 41540146 41540472 -142748190 - AluY SINE Alu -5 306 3 2035 95 14 0 chr4 41540675 41540958 -142747704 + AluSp SINE Alu 1 287 -26 219 36 0 0 chr4 41540961 41540989 -142747673 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 878 260 32 14 chr4 41541010 41541203 -142747459 + MIR SINE MIR 30 229 -33 2105 78 41 3 chr4 41541203 41541496 -142747166 + AluY SINE Alu 1 304 -7 878 260 32 14 chr4 41541496 41541521 -142747141 + MIR SINE MIR 229 252 -10 2572 90 8 11 chr4 41541524 41541880 -142746782 + THE1A LTR MaLR 1 355 0 1892 85 35 35 chr4 41542307 41542624 -142746038 + AluSp SINE Alu 1 317 0 1580 124 85 35 chr4 41543111 41543393 -142745269 + AluSx SINE Alu 1 296 -16 240 35 0 0 chr4 41544359 41544388 -142744274 + (GA)n Simple_repeat Simple_repeat 2 30 0 1955 122 10 7 chr4 41544406 41544720 -142743942 - AluSx SINE Alu 0 312 1 1574 205 0 19 chr4 41544980 41545297 -142743365 - AluJb SINE Alu -1 311 1 217 265 111 68 chr4 41545420 41545537 -142743125 + L2 LINE L2 3150 3271 -1 181 219 0 0 chr4 41545581 41545613 -142743049 + MIR SINE MIR 113 144 -118 2265 101 0 0 chr4 41546828 41547134 -142741528 - AluSx SINE Alu -6 306 1 776 289 29 0 chr4 41547330 41547576 -142741086 + LTR16C LTR ERVL 232 484 -7 2262 86 0 0 chr4 41547766 41548058 -142740604 - AluSx SINE Alu -20 292 1 318 292 62 0 chr4 41548128 41548224 -142740438 + L2 LINE L2 3212 3313 0 2199 103 0 0 chr4 41549043 41549335 -142739327 + AluSg SINE Alu 3 294 -16 2069 114 27 0 chr4 41549337 41549635 -142739027 + AluSx SINE Alu 1 306 -6 1780 152 9 19 chr4 41551176 41551491 -142737171 - AluJb SINE Alu 0 312 1 180 0 0 0 chr4 41551541 41551561 -142737101 + (TA)n Simple_repeat Simple_repeat 2 21 0 2367 79 3 0 chr4 41551561 41551865 -142736797 - AluSp SINE Alu -8 305 1 642 202 8 0 chr4 41551990 41552119 -142736543 + FLAM_C SINE Alu 11 140 -3 839 223 46 0 chr4 41552221 41552396 -142736266 + AluJb SINE Alu 121 303 -9 344 240 104 79 chr4 41552573 41552752 -142735910 - MIR3 SINE MIR -43 165 16 194 250 25 0 chr4 41553374 41553414 -142735248 - L3 LINE CR1 -25 1552 1512 434 167 250 9 chr4 41553434 41553542 -142735120 - L2 LINE L2 -1 3312 3179 2021 13 0 0 chr4 41553544 41553772 -142734890 - AluYa5 SINE Alu -9 302 75 739 155 9 0 chr4 41553806 41553922 -142734740 - Tigger1 DNA MER2_type 0 2418 2302 * 9875 117 25 15 chr4 41553912 41553979 -142734683 - Tigger1 DNA MER2_type -882 1536 1471 1743 151 10 10 chr4 41553979 41554291 -142734371 - AluJb SINE Alu 0 312 1 9875 117 25 15 chr4 41554291 41555265 -142733397 - Tigger1 DNA MER2_type -947 1471 472 1955 115 11 0 chr4 41555265 41555575 -142733087 - AluSx SINE Alu 0 313 1 9875 117 25 15 chr4 41555575 41556029 -142732633 - Tigger1 DNA MER2_type -1946 472 24 930 257 72 26 chr4 41556035 41556489 -142732173 - L2 LINE L2 -158 3155 2669 1640 153 4 0 chr4 41556723 41556985 -142731677 - AluSx SINE Alu -39 273 11 811 112 0 0 chr4 41557252 41557359 -142731303 + AluSq/x SINE Alu 1 107 -206 463 167 0 0 chr4 41557459 41557525 -142731137 - AluJ/FLAM SINE Alu -244 68 3 2328 160 11 33 chr4 41557575 41557825 -142730837 - L1MB5 LINE L1 -17 6157 5920 2067 110 0 0 chr4 41557825 41558116 -142730546 + AluSx SINE Alu 1 291 -21 2328 160 11 33 chr4 41558116 41558316 -142730346 - L1MB5 LINE L1 -254 5920 5717 838 189 37 30 chr4 41558516 41558680 -142729982 - FRAM SINE Alu -12 164 1 300 289 99 82 chr4 41558695 41559037 -142729625 + Charlie8 DNA MER1_type 75 422 -1995 437 165 16 211 chr4 41559121 41559189 -142729473 - L1MB7 LINE L1 -3 6181 6101 2004 87 0 54 chr4 41559189 41559525 -142729137 + AluSx SINE Alu 1 320 0 437 165 16 211 chr4 41559525 41559660 -142729002 - L1MB7 LINE L1 -83 6101 6028 1947 86 118 0 chr4 41559660 41559939 -142728723 + AluSx SINE Alu 1 312 0 437 165 16 211 chr4 41559939 41559975 -142728687 - L1MB7 LINE L1 -156 6028 5987 328 143 16 0 chr4 41560746 41560809 -142727853 + MER53 DNA DNA 124 187 -2 273 258 124 10 chr4 41561181 41561278 -142727384 - MIR SINE MIR -68 194 87 200 209 93 0 chr4 41561472 41561515 -142727147 + L2 LINE L2 3226 3272 0 372 282 0 27 chr4 41561891 41562001 -142726661 - MIR3 SINE MIR -18 190 84 316 279 35 0 chr4 41563050 41563136 -142725526 - L2 LINE L2 0 3313 3225 228 35 0 0 chr4 41564039 41564068 -142724594 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 614 186 152 0 chr4 41564078 41564223 -142724439 + Charlie5 DNA MER1_type 1 167 -2445 * 1342 144 148 38 chr4 41564217 41564556 -142724106 + Charlie5 DNA MER1_type 2249 2624 0 1573 157 30 0 chr4 41564668 41564936 -142723726 + AluJb SINE Alu 1 276 -36 1061 126 164 65 chr4 41565044 41565216 -142723446 - AluJo SINE Alu -37 275 73 2126 88 23 10 chr4 41565216 41565523 -142723139 + AluSp SINE Alu 2 312 -1 1061 126 164 65 chr4 41565523 41565581 -142723081 - AluJo SINE Alu -239 73 22 405 0 0 0 chr4 41565582 41565627 -142723035 + (TG)n Simple_repeat Simple_repeat 2 46 0 299 326 103 17 chr4 41565759 41565992 -142722670 - L2 LINE L2 -1063 2251 1999 617 234 19 32 chr4 41566051 41566205 -142722457 - MIR SINE MIR -77 185 34 2119 117 10 0 chr4 41566300 41566609 -142722053 + AluSx SINE Alu 1 312 0 499 243 57 14 chr4 41567018 41567158 -142721504 + L3b LINE CR1 1248 1393 -190 983 256 49 4 chr4 41567268 41567514 -142721148 - MIR SINE MIR 0 262 6 331 254 107 89 chr4 41567612 41567950 -142720712 + MLT1H LTR MaLR 17 360 -182 1615 142 3 66 chr4 41568030 41568362 -142720300 - AluSx SINE Alu -1 311 1 959 85 0 0 chr4 41568368 41568497 -142720165 - L1MB3 LINE L1 0 6183 6055 1971 102 0 66 chr4 41568497 41568829 -142719833 - AluSq SINE Alu -3 310 1 1560 133 0 0 chr4 41568835 41569076 -142719586 - L1MB3 LINE L1 0 6183 5943 539 250 32 0 chr4 41569342 41569466 -142719196 - MIR SINE MIR -54 208 81 343 194 134 148 chr4 41569812 41570029 -142718633 - MER112 DNA MER1_type -46 214 1 596 68 0 0 chr4 41570033 41570107 -142718555 + Alu SINE Alu 224 297 -13 727 209 16 0 chr4 41570500 41570629 -142718033 + FLAM_C SINE Alu 1 131 -2 2342 71 0 3 chr4 41570636 41570932 -142717730 - AluSp SINE Alu -18 295 1 773 129 73 0 chr4 41571372 41571496 -142717166 - FLAM_C SINE Alu 0 133 1 1123 131 11 0 chr4 41571756 41571931 -142716731 - AluSg/x SINE Alu -2 310 134 188 0 0 69 chr4 41571933 41571962 -142716700 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 760 126 0 9 chr4 41571962 41572073 -142716589 - AluSp/q SINE Alu -29 284 175 183 281 175 18 chr4 41572180 41572294 -142716368 + L2 LINE L2 2924 3055 -217 239 233 50 0 chr4 41572488 41572548 -142716114 + MLT1L LTR MaLR 3 65 -550 2020 124 13 0 chr4 41572745 41573052 -142715610 + AluSx SINE Alu 1 311 -1 1878 116 0 75 chr4 41573137 41573457 -142715205 + AluSx SINE Alu 1 296 -16 828 233 73 12 chr4 41573991 41574236 -142714426 - MER58B DNA MER1_type -1 340 81 27 73 0 0 chr4 41574454 41574509 -142714153 + AT_rich Low_complexity Low_complexity 1 55 0 2182 89 0 7 chr4 41574510 41574802 -142713860 + AluSc SINE Alu 1 290 -19 21 26 0 26 chr4 41574827 41574845 -142713817 + AT_rich Low_complexity Low_complexity 1 18 -20 1950 97 50 0 chr4 41574845 41575124 -142713538 + AluSx SINE Alu 1 293 -19 21 26 0 26 chr4 41575124 41575144 -142713518 + AT_rich Low_complexity Low_complexity 18 38 0 1714 154 0 11 chr4 41575772 41576081 -142712581 - AluJb SINE Alu 0 306 1 1996 131 3 13 chr4 41576502 41576814 -142711848 + AluSx SINE Alu 1 309 -3 1034 239 143 67 chr4 41576940 41577451 -142711211 + MLT1H1 LTR MaLR 1 550 -5 1507 163 23 46 chr4 41577541 41577848 -142710814 - AluJo SINE Alu -12 300 1 2463 37 0 0 chr4 41577888 41578183 -142710479 + AluY SINE Alu 1 295 -16 275 356 27 27 chr4 41578187 41578234 -142710428 + L3 LINE CR1 1315 1361 -216 2284 73 6 19 chr4 41578234 41578551 -142710111 + AluSp SINE Alu 1 313 0 275 356 27 27 chr4 41578551 41578649 -142710013 + L3 LINE CR1 1360 1460 -117 433 303 103 36 chr4 41578711 41578906 -142709756 + MIR SINE MIR 47 254 -8 192 333 64 0 chr4 41578886 41578964 -142709698 + L3 LINE CR1 1471 1553 -24 * 305 291 95 90 chr4 41579343 41579432 -142709230 + MIR SINE MIR 14 101 -161 1959 125 3 26 chr4 41579432 41579744 -142708918 + AluSx SINE Alu 1 305 -7 305 291 95 90 chr4 41579744 41579843 -142708819 + MIR SINE MIR 101 203 -59 2398 67 0 0 chr4 41579913 41580212 -142708450 + AluSc SINE Alu 1 299 -10 1485 258 79 22 chr4 41580393 41580452 -142708210 - L1ME3A LINE L1 -5 6165 6111 739 180 8 23 chr4 41580452 41580580 -142708082 + FLAM_C SINE Alu 1 126 -7 1485 258 79 22 chr4 41580580 41581063 -142707599 - L1ME3A LINE L1 -59 6111 5592 354 133 0 40 chr4 41581085 41581160 -142707502 + (TCTCC)n Simple_repeat Simple_repeat 2 73 0 940 82 0 0 chr4 41581462 41581607 -142707055 + AluSg/x SINE Alu 160 304 0 393 270 103 24 chr4 41581858 41581984 -142706678 - MIR3 SINE MIR -3 205 70 787 137 23 23 chr4 41582325 41582456 -142706206 + FLAM_C SINE Alu 3 133 -10 847 232 49 99 chr4 41582515 41582920 -142705742 + MLT1J1 LTR MaLR 62 446 0 305 313 36 27 chr4 41583953 41584065 -142704597 + MIR SINE MIR 15 127 -135 1782 158 16 0 chr4 41584184 41584487 -142704175 + AluJo SINE Alu 1 308 -4 733 234 70 28 chr4 41584741 41584759 -142703903 + MIR SINE MIR 17 33 -229 2202 102 0 0 chr4 41584759 41585054 -142703608 + AluSg SINE Alu 2 296 -14 733 234 70 28 chr4 41585054 41585249 -142703413 + MIR SINE MIR 33 239 -23 399 158 0 45 chr4 41585262 41585354 -142703308 - AluJ/FLAM SINE Alu -240 62 1 230 321 0 25 chr4 41585461 41585542 -142703120 - MIR SINE MIR -135 127 49 509 313 34 0 chr4 41585701 41585877 -142702785 - MIR SINE MIR -1 261 80 696 140 0 0 chr4 41586414 41586521 -142702141 + AluSg/x SINE Alu 191 297 -15 1862 140 0 22 chr4 41586532 41586846 -142701816 + AluJb SINE Alu 1 307 -5 244 247 41 14 chr4 41586856 41586929 -142701733 + L1M4 LINE L1 4514 4588 -1558 1946 81 0 0 chr4 41587127 41587375 -142701287 + AluSq SINE Alu 39 286 -27 576 77 0 0 chr4 41587375 41587453 -142701209 + (TAGA)n Simple_repeat Simple_repeat 2 79 0 2474 50 0 0 chr4 41587802 41588100 -142700562 - AluY SINE Alu -13 298 1 2171 92 0 3 chr4 41588109 41588402 -142700260 - AluSx SINE Alu -20 292 1 3372 108 8 35 chr4 41588485 41588976 -142699686 - MER1A DNA MER1_type 0 529 52 336 281 117 56 chr4 41588992 41589241 -142699421 + L1MC4a LINE L1 1712 1975 -4421 2049 113 0 0 chr4 41589323 41589635 -142699027 + AluSx SINE Alu 1 312 0 399 342 53 9 chr4 41589658 41590000 -142698662 + L1MC4a LINE L1 4870 5226 -989 1028 93 6 49 chr4 41590021 41590127 -142698535 + L1PB1 LINE L1 5997 6095 -56 2178 101 3 16 chr4 41590127 41590434 -142698228 + AluSx SINE Alu 1 303 -9 1028 93 6 49 chr4 41590434 41590489 -142698173 + L1PB1 LINE L1 6095 6151 0 1740 94 68 4 chr4 41590505 41590770 -142697892 + AluSx SINE Alu 12 293 -19 488 253 82 10 chr4 41590773 41590967 -142697695 + L1MC4a LINE L1 5888 6095 -1782 651 144 135 0 chr4 41591009 41591113 -142697549 + FLAM_C SINE Alu 1 118 -15 44 0 0 0 chr4 41591113 41591157 -142697505 + AT_rich Low_complexity Low_complexity 1 44 0 2011 128 7 10 chr4 41591262 41591566 -142697096 + AluSx SINE Alu 1 303 -9 1640 140 45 21 chr4 41591852 41592138 -142696524 + AluSx SINE Alu 1 293 -19 706 97 32 0 chr4 41592142 41592266 -142696396 + GA-rich Low_complexity Low_complexity 1 128 0 2115 128 0 0 chr4 41592981 41593279 -142695383 + AluSx SINE Alu 1 298 -14 733 220 177 5 chr4 41593403 41593589 -142695073 + MER20 DNA MER1_type 1 218 -1 2092 91 17 3 chr4 41593687 41593983 -142694679 + AluSp SINE Alu 1 300 -13 369 164 0 0 chr4 41594107 41594162 -142694500 - MER81 DNA DNA -2 112 58 186 167 0 0 chr4 41594630 41594666 -142693996 + T-rich Low_complexity Low_complexity 1 36 0 429 131 12 83 chr4 41594717 41594801 -142693861 - AluJo SINE Alu -167 145 68 821 134 0 54 chr4 41594982 41595131 -142693531 - FRAM SINE Alu -18 158 18 854 235 54 5 chr4 41595198 41595402 -142693260 - MIR SINE MIR -26 236 23 309 313 46 23 chr4 41596297 41596428 -142692234 + L2 LINE L2 2603 2736 -578 1689 150 21 4 chr4 41596455 41596756 -142691906 + AluSp SINE Alu 1 306 0 408 322 187 0 chr4 41597051 41597383 -142691279 + L2 LINE L2 1647 2040 -1274 407 274 22 115 chr4 41597631 41597739 -142690923 + L2 LINE L2 2611 2727 -587 2040 119 0 7 chr4 41597739 41598033 -142690629 + AluSx SINE Alu 3 294 -18 2207 99 0 0 chr4 41598042 41598336 -142690326 + AluSg SINE Alu 1 294 -16 407 274 22 115 chr4 41598336 41598487 -142690175 + L2 LINE L2 2735 2855 -459 387 0 0 0 chr4 41598496 41598539 -142690123 + (TG)n Simple_repeat Simple_repeat 2 44 0 2057 91 4 4 chr4 41598540 41598815 -142689847 - AluSq SINE Alu -33 280 6 816 221 122 9 chr4 41598876 41599089 -142689573 - AluJo SINE Alu 0 312 76 244 175 0 0 chr4 41599089 41599129 -142689533 - Alu SINE Alu -128 175 136 2148 117 0 3 chr4 41599140 41599447 -142689215 - AluSx SINE Alu -6 306 1 2070 64 0 21 chr4 41599447 41599727 -142688935 - AluY SINE Alu -1 310 37 2415 53 0 0 chr4 41599734 41600033 -142688629 - AluY SINE Alu -2 309 11 1496 153 45 8 chr4 41600040 41600308 -142688354 - L1PA13 LINE L1 0 6163 5886 357 298 69 38 chr4 41600328 41600459 -142688203 + MIR3 SINE MIR 25 159 -49 746 94 0 27 chr4 41600563 41600620 -142688042 - L1PA13 LINE L1 -281 5882 5826 1651 143 82 0 chr4 41600620 41600900 -142687762 - AluJb SINE Alu -9 303 1 746 94 0 27 chr4 41600900 41600952 -142687710 - L1PA13 LINE L1 -337 5826 5774 2461 65 0 0 chr4 41600955 41601262 -142687400 - AluY SINE Alu -4 307 1 1148 259 19 49 chr4 41601303 41601673 -142686989 + L2 LINE L2 2953 3311 -2 184 246 61 44 chr4 41601698 41601812 -142686850 + L2 LINE L2 2468 2583 -731 238 308 116 30 chr4 41601895 41602093 -142686569 + L2 LINE L2 2807 3021 -251 195 319 66 11 chr4 41602208 41602299 -142686363 + L2 LINE L2 3143 3238 -75 2031 116 36 7 chr4 41602332 41602692 -142685970 - AluSq SINE Alu 0 369 1 272 338 0 0 chr4 41602695 41602769 -142685893 + L2 LINE L2 3231 3304 -9 491 272 129 32 chr4 41602794 41603011 -142685651 - MIR SINE MIR 0 262 25 952 80 7 33 chr4 41603034 41603184 -142685478 - L1MA5 LINE L1 -3 6297 6152 35 0 0 0 chr4 41603194 41603229 -142685433 + AT_rich Low_complexity Low_complexity 1 35 0 1405 172 55 45 chr4 41603229 41603373 -142685289 - AluJb SINE Alu -19 293 152 2090 71 67 0 chr4 41603373 41603656 -142685006 - AluSx SINE Alu -10 302 1 1405 172 55 45 chr4 41603656 41603801 -142684861 - AluJb SINE Alu -160 152 1 742 182 0 0 chr4 41604043 41604164 -142684498 - FLAM_A SINE Alu -12 121 1 349 246 0 0 chr4 41604304 41604373 -142684289 - L2 LINE L2 -2 3311 3243 921 230 60 17 chr4 41604449 41604684 -142683978 + MIR SINE MIR 15 259 -3 21 57 0 0 chr4 41605277 41605312 -142683350 + AT_rich Low_complexity Low_complexity 1 35 0 2187 88 0 10 chr4 41605427 41605722 -142682940 + AluSg SINE Alu 1 292 -18 822 160 0 0 chr4 41605791 41605910 -142682752 + AluJb SINE Alu 2 120 -192 720 57 0 0 chr4 41606099 41606187 -142682475 - AluS SINE Alu -223 89 2 2154 105 0 7 chr4 41606289 41606585 -142682077 + AluSc SINE Alu 1 294 -15 35 54 0 0 chr4 41606696 41606752 -142681910 + AT_rich Low_complexity Low_complexity 1 56 0 1674 167 26 7 chr4 41606972 41607278 -142681384 + AluJb SINE Alu 1 312 0 790 159 68 25 chr4 41607294 41607457 -142681205 + FRAM SINE Alu 1 169 -7 2282 94 0 0 chr4 41607541 41607848 -142680814 + AluSg SINE Alu 1 307 -3 393 207 58 58 chr4 41607858 41607979 -142680683 + L2 LINE L2 2300 2420 -894 1518 174 8 4 chr4 41608160 41608419 -142680243 + AluJo SINE Alu 1 260 -52 388 315 61 52 chr4 41608444 41608747 -142679915 + L2 LINE L2 2742 3066 -247 2033 118 7 0 chr4 41608929 41609234 -142679428 + AluSx SINE Alu 1 307 -5 2166 88 3 3 chr4 41609239 41609534 -142679128 + AluSg SINE Alu 1 295 -15 857 128 0 40 chr4 41609698 41609847 -142678815 - FLAM_C SINE Alu 0 143 1 1025 258 135 45 chr4 41611077 41611611 -142677051 - L2 LINE L2 0 3313 2699 2162 130 0 0 chr4 41611611 41611904 -142676758 + AluSx SINE Alu 1 293 -19 1025 258 135 45 chr4 41611904 41611998 -142676664 - L2 LINE L2 -614 2699 2615 997 195 0 0 chr4 41612522 41612686 -142675976 - FAM SINE Alu -11 164 1 234 0 0 0 chr4 41612852 41612878 -142675784 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1713 163 14 0 chr4 41612881 41613158 -142675504 - AluSx SINE Alu -31 281 1 659 182 200 36 chr4 41613161 41613326 -142675336 - MIR SINE MIR -65 197 6 2297 87 37 0 chr4 41613857 41614157 -142674505 - AluSq SINE Alu -2 311 1 21 0 0 0 chr4 41614415 41614436 -142674226 + AT_rich Low_complexity Low_complexity 1 21 0 306 130 0 0 chr4 41620034 41620080 -142668582 + MIR SINE MIR 189 234 -28 371 253 4 29 chr4 41620146 41620250 -142668412 + MIR SINE MIR 20 128 -80 378 188 103 43 chr4 41620747 41620864 -142667798 - MIR SINE MIR -51 211 88 24 0 0 0 chr4 41620927 41620951 -142667711 + AT_rich Low_complexity Low_complexity 1 24 0 2183 108 0 0 chr4 41621473 41621769 -142666893 + AluSx SINE Alu 2 297 -15 25 31 0 0 chr4 41621772 41621804 -142666858 + AT_rich Low_complexity Low_complexity 1 32 0 28 0 0 0 chr4 41622177 41622205 -142666457 + AT_rich Low_complexity Low_complexity 1 28 0 1611 118 4 21 chr4 41622458 41622695 -142665967 - AluSg/x SINE Alu -8 302 70 1906 130 0 4 chr4 41622812 41623082 -142665580 + AluSq SINE Alu 25 293 -20 2870 217 36 16 chr4 41623087 41623837 -142664825 + L1M4 LINE L1 2397 3161 -2985 202 102 0 61 chr4 41623980 41624029 -142664633 + (TGAA)n Simple_repeat Simple_repeat 3 48 0 2008 129 0 7 chr4 41624621 41624916 -142663746 - AluSx SINE Alu -19 293 1 2105 115 51 3 chr4 41624928 41625223 -142663439 - AluSx SINE Alu -3 309 1 267 340 62 0 chr4 41625875 41625972 -142662690 - MIR SINE MIR -71 137 35 1629 174 3 20 chr4 41626138 41626431 -142662231 - AluJo SINE Alu -24 288 1 2229 111 0 3 chr4 41626456 41626753 -142661909 - AluSx SINE Alu -14 298 3 1540 209 137 36 chr4 41626774 41627247 -142661415 - MER113 DNA MER1_type? 0 521 1 2553 63 3 0 chr4 41627316 41627616 -142661046 - AluSp SINE Alu -12 301 1 1625 147 26 15 chr4 41628183 41628448 -142660214 + AluJo SINE Alu 1 268 -44 2445 54 0 3 chr4 41629561 41629857 -142658805 - AluY SINE Alu -16 295 1 265 363 0 0 chr4 41629880 41629960 -142658702 + L2 LINE L2 3193 3272 0 726 220 174 18 chr4 41630061 41630279 -142658383 + MLT1J LTR MaLR 11 262 -249 292 323 10 31 chr4 41630370 41630466 -142658196 + MER5A DNA MER1_type 1 94 -95 188 306 188 24 chr4 41630403 41630488 -142658174 - MER5A DNA MER1_type -22 167 69 * 822 114 0 53 chr4 41630495 41630626 -142658036 + FLAM_C SINE Alu 2 125 -8 2162 101 0 0 chr4 41630637 41630924 -142657738 + AluSx SINE Alu 6 292 -20 22 0 0 0 chr4 41630931 41630953 -142657709 + AT_rich Low_complexity Low_complexity 1 22 0 733 179 0 30 chr4 41632598 41632732 -142655930 - FLAM_C SINE Alu -12 131 2 1518 193 7 11 chr4 41633021 41633301 -142655361 + AluJb SINE Alu 1 279 -33 438 243 36 50 chr4 41633399 41633539 -142655123 - MARNA DNA Mariner -378 208 71 777 195 0 0 chr4 41633604 41633722 -142654940 + AluJo/FLAM SINE Alu 1 118 -194 2463 85 0 0 chr4 41633722 41634029 -142654633 - AluY SINE Alu -4 307 1 24 0 0 0 chr4 41634038 41634062 -142654600 + AT_rich Low_complexity Low_complexity 1 24 0 1790 120 22 11 chr4 41634579 41634853 -142653809 - AluSg1 SINE Alu -5 304 28 2455 107 72 17 chr4 41635006 41635351 -142653311 + THE1B LTR MaLR 1 364 0 2144 107 3 17 chr4 41635450 41635749 -142652913 - AluSx SINE Alu -9 303 9 33 0 0 23 chr4 41636399 41636419 -142652243 + AT_rich Low_complexity Low_complexity 1 20 -23 2165 93 4 0 chr4 41636419 41636697 -142651965 - AluY SINE Alu -32 279 1 33 0 0 23 chr4 41636697 41636720 -142651942 + AT_rich Low_complexity Low_complexity 20 43 0 2264 201 7 21 chr4 41636982 41637522 -142651140 - MER77 LTR ERV1 -3 602 19 916 212 88 9 chr4 41637876 41638093 -142650569 + MIR SINE MIR 8 241 -21 2080 154 5 60 chr4 41638099 41638258 -142650404 + MER47A DNA MER2_type 4 170 -2153 2202 104 0 0 chr4 41638258 41638571 -142650091 + AluSg SINE Alu 1 313 0 2080 154 5 60 chr4 41638571 41638794 -142649868 + MER47A DNA MER2_type 170 366 0 544 175 41 6 chr4 41638845 41639016 -142649646 + (TA)n Simple_repeat Simple_repeat 2 178 0 273 57 0 0 chr4 41639035 41639070 -142649592 + (CA)n Simple_repeat Simple_repeat 2 36 0 279 0 0 0 chr4 41639212 41639243 -142649419 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2055 115 7 4 chr4 41639250 41639529 -142649133 - AluSq SINE Alu -33 280 1 801 181 8 0 chr4 41639853 41639986 -142648676 + AluSq/x SINE Alu 1 134 -179 29 47 0 0 chr4 41639986 41640029 -142648633 + AT_rich Low_complexity Low_complexity 1 43 0 1205 151 0 0 chr4 41640029 41640208 -142648454 + AluJb SINE Alu 118 296 -16 2121 113 0 3 chr4 41640338 41640641 -142648021 + AluSx SINE Alu 2 303 0 426 290 43 29 chr4 41640717 41640855 -142647807 + L2 LINE L2 2899 3038 -275 787 199 68 52 chr4 41640855 41641068 -142647594 + L1M4 LINE L1 3530 3749 -2397 2159 129 10 0 chr4 41641068 41641370 -142647292 + AluSx SINE Alu 1 305 -7 787 199 68 52 chr4 41641370 41641407 -142647255 + L1M4 LINE L1 3749 3784 -2362 2389 73 10 7 chr4 41641890 41642191 -142646471 + AluSp SINE Alu 1 302 -11 198 0 0 0 chr4 41642399 41642421 -142646241 + (GAATG)n Simple_repeat Simple_repeat 3 24 0 300 248 58 41 chr4 41643101 41643222 -142645440 + MIR SINE MIR 140 262 0 1356 220 77 34 chr4 41643225 41643575 -142645087 + MLT1A1 LTR MaLR 1 365 0 650 232 110 69 chr4 41643800 41643943 -142644719 - MIR SINE MIR 0 262 103 2053 107 0 182 chr4 41643943 41644355 -142644307 + MER1B DNA MER1_type 1 337 0 650 232 110 69 chr4 41644355 41644457 -142644205 - MIR SINE MIR -159 103 7 26 0 0 0 chr4 41645358 41645384 -142643278 + AT_rich Low_complexity Low_complexity 1 26 0 24883 26 2 0 chr4 41645384 41648951 -142639711 - L1PA3 LINE L1 0 6155 2586 2083 117 40 0 chr4 41649501 41649799 -142638863 - AluSx SINE Alu -2 310 1 662 320 79 37 chr4 41650271 41650599 -142638063 + L2 LINE L2 2369 2710 -604 616 305 67 22 chr4 41650605 41650874 -142637788 + L1MEc LINE L1 49 329 -6067 362 252 30 38 chr4 41650880 41651011 -142637651 - L1M4 LINE L1 -2259 3887 3758 2341 95 3 3 chr4 41651237 41651543 -142637119 + AluSp SINE Alu 1 306 -7 2129 160 30 0 chr4 41651546 41651883 -142636779 - MER7A DNA MER2_type 0 346 2 2403 94 0 0 chr4 41652080 41652379 -142636283 + AluSc SINE Alu 1 299 -10 216 184 0 0 chr4 41653015 41653064 -142635598 + (TA)n Simple_repeat Simple_repeat 2 50 0 654 303 61 17 chr4 41654457 41654688 -142633974 - MIR SINE MIR -2 260 20 2268 111 0 0 chr4 41654712 41655009 -142633653 + AluSx SINE Alu 1 297 -15 2198 88 30 0 chr4 41655108 41655404 -142633258 - AluSq SINE Alu -8 305 1 187 269 0 39 chr4 41655524 41655576 -142633086 + L2 LINE L2 3137 3186 -86 22 80 0 0 chr4 41655645 41655695 -142632967 + AT_rich Low_complexity Low_complexity 1 50 0 30 19 0 39 chr4 41655806 41655837 -142632825 + AT_rich Low_complexity Low_complexity 1 31 -19 757 167 18 0 chr4 41655837 41655951 -142632711 - FLAM_A SINE Alu -17 116 1 30 19 0 39 chr4 41655951 41655971 -142632691 + AT_rich Low_complexity Low_complexity 31 50 0 24 77 0 0 chr4 41656016 41656068 -142632594 + AT_rich Low_complexity Low_complexity 1 52 0 21 36 0 0 chr4 41656477 41656505 -142632157 + AT_rich Low_complexity Low_complexity 1 28 0 1851 176 0 10 chr4 41656916 41657228 -142631434 - AluJb SINE Alu -3 309 1 301 311 15 8 chr4 41657321 41657453 -142631209 + (TA)n Simple_repeat Simple_repeat 1 133 0 227 140 0 88 chr4 41657482 41657539 -142631123 + LTR66 LTR ERVL 390 441 -169 1223 174 7 51 chr4 41657580 41657874 -142630788 + L1MEc LINE L1 391 671 -5442 264 104 21 42 chr4 41657875 41657914 -142630748 - Alu SINE Alu -255 47 8 2263 116 3 0 chr4 41657914 41658217 -142630445 - AluSp SINE Alu -9 304 1 644 170 0 10 chr4 41658391 41658491 -142630171 - AluS SINE Alu -213 100 2 1878 174 3 0 chr4 41658577 41658887 -142629775 - AluJo SINE Alu -1 311 1 596 274 113 8 chr4 41658902 41659168 -142629494 + L1MEc LINE L1 2279 2572 -3643 4593 178 57 38 chr4 41659180 41659461 -142629201 + L1MB7 LINE L1 4224 4498 -1686 1536 137 78 19 chr4 41659461 41659717 -142628945 + AluJb SINE Alu 40 310 -2 1946 148 7 7 chr4 41659727 41660024 -142628638 + AluJo SINE Alu 1 297 -15 4593 178 57 38 chr4 41660024 41660707 -142627955 + L1MB7 LINE L1 4506 5175 -1009 2247 118 0 0 chr4 41660707 41661003 -142627659 + AluSx SINE Alu 1 296 -16 4593 178 57 38 chr4 41661003 41661906 -142626756 + L1MB7 LINE L1 5175 6128 -56 550 263 130 15 chr4 41661913 41662183 -142626479 + L1MEc LINE L1 2558 2858 -3357 994 204 15 0 chr4 41662193 41662389 -142626273 - AluJo SINE Alu -25 287 89 464 259 77 67 chr4 41662422 41662508 -142626154 + L1MEc LINE L1 2851 2935 -3280 2381 85 0 3 chr4 41662508 41662802 -142625860 - AluSq SINE Alu -20 293 1 464 259 77 67 chr4 41662802 41663028 -142625634 + L1MEc LINE L1 2935 3166 -3049 229 275 99 18 chr4 41664146 41664317 -142624345 + L1MEc LINE L1 3113 3297 -2918 1221 60 0 30 chr4 41664319 41664485 -142624177 + SVA Other Other 1226 1386 0 29 60 0 0 chr4 41664499 41664549 -142624113 + AT_rich Low_complexity Low_complexity 1 50 0 385 243 95 40 chr4 41664592 41664740 -142623922 + L1MEc LINE L1 3374 3529 -2686 312 250 101 101 chr4 41664790 41664958 -142623704 + L1MEc LINE L1 3551 3718 -2497 2307 101 0 10 chr4 41664967 41665275 -142623387 - AluSg SINE Alu -5 305 1 1155 239 173 12 chr4 41665275 41665610 -142623052 - L2 LINE L2 -891 2423 2035 417 259 130 6 chr4 41665626 41665788 -142622874 + LTR50 LTR ERVL 1 182 -613 231 202 30 111 chr4 41665955 41666054 -142622608 + LTR50 LTR ERVL 569 659 -136 520 187 0 19 chr4 41666102 41666209 -142622453 + L1MC5 LINE L1 7081 7185 -776 1466 209 120 38 chr4 41666315 41666864 -142621798 + L1MC5 LINE L1 7334 7927 -34 259 237 92 59 chr4 41666937 41667089 -142621573 - L2 LINE L2 -1670 1644 1488 498 308 167 0 chr4 41667272 41667493 -142621169 - MIR SINE MIR -3 259 2 28 29 0 0 chr4 41667929 41667964 -142620698 + AT_rich Low_complexity Low_complexity 1 35 0 215 247 141 0 chr4 41667989 41668074 -142620588 - MIR SINE MIR 0 262 166 420 316 46 13 chr4 41668165 41668317 -142620345 - MIR SINE MIR -89 173 17 25 31 0 0 chr4 41668443 41668475 -142620187 + AT_rich Low_complexity Low_complexity 1 32 0 822 272 25 8 chr4 41668476 41668715 -142619947 - MIR SINE MIR -7 255 13 602 344 47 0 chr4 41668903 41669115 -142619547 - MIR SINE MIR -3 259 38 2288 100 0 3 chr4 41669612 41669922 -142618740 + AluSx SINE Alu 1 309 -3 746 279 51 14 chr4 41670163 41670378 -142618284 - MIR SINE MIR -12 250 28 288 0 0 0 chr4 41670554 41670586 -142618076 + (TG)n Simple_repeat Simple_repeat 2 33 0 425 331 7 0 chr4 41670586 41670728 -142617934 + MIR SINE MIR 71 213 -49 198 0 0 0 chr4 41670865 41670887 -142617775 + (A)n Simple_repeat Simple_repeat 1 22 0 2073 127 10 0 chr4 41671719 41672010 -142616652 + AluSx SINE Alu 1 294 -18 1754 183 3 16 chr4 41672336 41672647 -142616015 - AluJo SINE Alu -5 307 1 441 246 44 19 chr4 41672783 41672977 -142615685 - MIR SINE MIR -19 243 37 325 213 222 0 chr4 41673471 41673579 -142615083 + L2 LINE L2 3182 3313 0 2357 70 13 0 chr4 41674264 41674562 -142614100 - AluSx SINE Alu -10 302 1 607 242 8 0 chr4 41674685 41674813 -142613849 - FLAM_A SINE Alu -4 129 1 741 243 60 0 chr4 41675078 41675263 -142613399 + MER58A DNA MER1_type 1 196 -28 1239 158 18 35 chr4 41675266 41675494 -142613168 + AluJb SINE Alu 69 292 -20 238 147 0 0 chr4 41675507 41675541 -142613121 + MER58A DNA MER1_type 191 224 0 441 237 42 17 chr4 41675585 41675703 -142612959 - MER45A DNA AcHobo 0 178 58 201 74 0 0 chr4 41676251 41676278 -142612384 + (TA)n Simple_repeat Simple_repeat 2 28 0 2086 105 34 7 chr4 41676616 41676910 -142611752 + AluSx SINE Alu 1 302 -10 1899 147 3 13 chr4 41677183 41677482 -142611180 - AluSx SINE Alu -16 296 1 188 294 207 26 chr4 41677631 41677816 -142610846 + L2 LINE L2 2482 2632 -681 188 200 25 0 chr4 41677816 41677856 -142610806 - L3 LINE CR1 -1144 433 393 188 294 207 26 chr4 41677856 41677992 -142610670 + L2 LINE L2 2632 2742 -571 2218 111 3 23 chr4 41677992 41678299 -142610363 - AluSx SINE Alu -11 301 1 188 294 207 26 chr4 41678299 41678579 -142610083 + L2 LINE L2 2742 3278 -35 183 270 40 40 chr4 41678702 41678776 -142609886 - L2 LINE L2 -3 3310 3237 2309 108 0 6 chr4 41679047 41679362 -142609300 + AluSq SINE Alu 1 313 0 323 270 81 63 chr4 41679791 41679902 -142608760 + L2 LINE L2 3156 3268 -4 2227 118 0 6 chr4 41679994 41680308 -142608354 + AluSx SINE Alu 1 312 0 24 77 0 0 chr4 41681705 41681757 -142606905 + GC_rich Low_complexity Low_complexity 1 52 0 2319 77 7 3 chr4 41682012 41682312 -142606350 - AluSx SINE Alu -11 301 1 1086 61 0 0 chr4 41682890 41683021 -142605641 + AluSg/x SINE Alu 176 306 -6 230 184 82 0 chr4 41683231 41683280 -142605382 - L2 LINE L2 -2 3270 3218 569 120 150 10 chr4 41683830 41683930 -142604732 - AluSc SINE Alu -14 295 182 885 120 0 0 chr4 41683930 41684047 -142604615 - AluSq/x SINE Alu -195 117 1 500 235 65 111 chr4 41684047 41684565 -142604097 + L2 LINE L2 2616 3111 -161 1978 237 51 16 chr4 41684713 41685207 -142603455 + MER77 LTR ERV1 78 588 -17 225 359 0 13 chr4 41685231 41685309 -142603353 + L2 LINE L2 3233 3309 -4 1134 127 5 99 chr4 41685556 41685611 -142603051 + AluJo SINE Alu 83 142 -170 2304 99 3 0 chr4 41685611 41685904 -142602758 + AluSx SINE Alu 1 294 -18 1134 127 5 99 chr4 41685904 41686069 -142602593 + AluJo SINE Alu 142 282 -30 207 100 0 0 chr4 41686072 41686102 -142602560 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 1476 131 0 0 chr4 41687121 41687335 -142601327 + AluSg SINE Alu 1 214 -96 2064 138 0 0 chr4 41687559 41687848 -142600814 + AluSx SINE Alu 1 289 -23 384 272 68 34 chr4 41688021 41688168 -142600494 + MIR SINE MIR 2 153 -109 27 29 0 0 chr4 41688238 41688272 -142600390 + AT_rich Low_complexity Low_complexity 1 34 0 210 307 13 0 chr4 41690282 41690357 -142598305 - MIR SINE MIR -10 252 177 660 266 121 94 chr4 41690394 41690486 -142598176 + L2 LINE L2 10 98 -3216 1780 120 116 0 chr4 41690486 41690753 -142597909 + AluSx SINE Alu 1 298 -14 1567 176 41 10 chr4 41690759 41691049 -142597613 + AluJo SINE Alu 1 299 -13 660 266 121 94 chr4 41691049 41691321 -142597341 + L2 LINE L2 102 391 -2923 3317 276 88 12 chr4 41691324 41692717 -142595945 + L2 LINE L2 1815 3313 0 521 238 79 8 chr4 41692718 41692844 -142595818 - MIR SINE MIR -100 162 28 2113 108 0 11 chr4 41693474 41693761 -142594901 - AluSx SINE Alu -2 310 27 855 157 0 15 chr4 41693778 41693912 -142594750 + FLAM_C SINE Alu 1 132 -1 203 363 0 25 chr4 41694081 41694161 -142594501 + L3 LINE CR1 1471 1548 -29 207 337 24 0 chr4 41694170 41694253 -142594409 - L3 LINE CR1 -11 1566 1482 237 329 57 7 chr4 41694516 41694656 -142594006 - L1MC/D LINE L1 -2289 5519 5373 495 235 7 46 chr4 41694704 41694744 -142593918 - Charlie2 DNA MER1_type 0 2862 2822 2259 118 0 0 chr4 41694744 41695040 -142593622 - AluSx SINE Alu -16 296 1 495 235 7 46 chr4 41695040 41695152 -142593510 - Charlie2 DNA MER1_type -40 2822 2716 * 577 202 119 41 chr4 41695127 41695345 -142593317 - Charlie2a DNA MER1_type -1163 1699 1465 434 148 0 11 chr4 41695401 41695489 -142593173 + (GGGA)n Simple_repeat Simple_repeat 4 90 0 557 180 98 0 chr4 41695567 41695689 -142592973 - Charlie2a DNA MER1_type -2553 309 176 352 299 103 0 chr4 41695702 41695819 -142592843 + MIR SINE MIR 133 261 -1 456 250 161 88 chr4 41695839 41696016 -142592646 - L1MC/D LINE L1 -798 5348 5185 2094 143 0 13 chr4 41696016 41696330 -142592332 + AluJb SINE Alu 1 310 -2 456 250 161 88 chr4 41696330 41696723 -142591939 - L1MC/D LINE L1 -961 5185 4736 272 232 218 35 chr4 41697061 41697203 -142591459 + MER112 DNA MER1_type 12 179 -81 6563 34 4 0 chr4 41697203 41697963 -142590699 - L1PA3 LINE L1 -14 6141 5379 598 123 9 61 chr4 41698013 41698127 -142590535 - L1MB8 LINE L1 -2 6176 6069 695 204 15 0 chr4 41698127 41698264 -142590398 - L1M4 LINE L1 -1158 4988 4850 722 153 368 0 chr4 41698272 41698435 -142590227 + AluJo SINE Alu 85 307 -5 334 187 11 110 chr4 41698440 41698531 -142590131 - L1M4 LINE L1 -1296 4850 4769 2433 74 3 0 chr4 41698558 41698854 -142589808 + AluSx SINE Alu 1 297 -15 262 272 0 29 chr4 41698854 41698957 -142589705 - L1M4 LINE L1 -2197 3949 3850 1064 284 33 20 chr4 41699133 41699540 -142589122 - HERV16 LTR ERVL -3536 1460 1083 970 243 187 29 chr4 41699540 41699989 -142588673 - MLT1E3 LTR MaLR 0 624 105 857 195 17 59 chr4 41699997 41700233 -142588429 - MLT1C LTR MaLR 0 467 242 1022 159 0 0 chr4 41700258 41700409 -142588253 - AluSg/x SINE Alu -28 284 134 2096 108 35 0 chr4 41700409 41700695 -142587967 - AluSq SINE Alu -17 296 1 29 0 0 0 chr4 41700765 41700794 -142587868 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr4 41701250 41701281 -142587381 + AT_rich Low_complexity Low_complexity 1 31 0 1138 69 0 14 chr4 41701748 41701893 -142586769 - AluSg/x SINE Alu -11 298 156 2078 112 41 0 chr4 41702160 41702454 -142586208 + AluSx SINE Alu 1 306 -6 186 231 0 0 chr4 41704538 41704577 -142584085 + MIR3 SINE MIR 157 195 -13 1926 150 0 25 chr4 41704688 41705002 -142583660 + AluJb SINE Alu 1 306 -6 1752 117 98 11 chr4 41705685 41705959 -142582703 + AluSx SINE Alu 1 298 -14 27 29 0 0 chr4 41707685 41707719 -142580943 + AT_rich Low_complexity Low_complexity 1 34 0 262 300 145 25 chr4 41708787 41709004 -142579658 + MIR SINE MIR 1 228 -34 25 0 0 0 chr4 41709289 41709314 -142579348 + AT_rich Low_complexity Low_complexity 1 25 0 471 217 67 67 chr4 41711062 41711256 -142577406 + MIR SINE MIR 57 256 -6 2053 135 3 3 chr4 41711526 41711830 -142576832 + AluJb SINE Alu 1 304 -8 1172 178 69 35 chr4 41711832 41712063 -142576599 - MER8 DNA MER2_type 0 239 1 742 149 0 0 chr4 41713290 41713397 -142575265 - FLAM_A SINE Alu -18 124 18 2072 117 7 7 chr4 41713577 41713886 -142574776 - AluSx SINE Alu -3 309 1 360 153 0 0 chr4 41713966 41714025 -142574637 + FLAM SINE Alu 73 131 -2 1013 139 6 0 chr4 41714211 41714377 -142574285 - FRAM SINE Alu -10 166 1 213 188 106 71 chr4 41714443 41714528 -142574134 + L2 LINE L2 3139 3226 -46 2107 99 3 3 chr4 41714785 41715089 -142573573 + AluSq SINE Alu 1 304 0 2079 90 14 0 chr4 41715368 41715656 -142573006 - AluSp SINE Alu -21 292 1 467 284 76 41 chr4 41715755 41715952 -142572710 + MIR SINE MIR 3 206 -56 572 271 64 0 chr4 41717560 41717700 -142570962 + MIR SINE MIR 2 150 -112 781 103 12 6 chr4 41718411 41718673 -142569989 + AluSq SINE Alu 1 312 -1 2956 192 28 49 chr4 41718881 41718987 -142569675 - L1MB7 LINE L1 -7 6177 6070 1840 153 0 10 chr4 41718987 41719275 -142569387 - AluJb SINE Alu -21 291 7 2956 192 28 49 chr4 41719275 41719856 -142568806 - L1MB7 LINE L1 -114 6070 5505 1518 127 116 15 chr4 41720864 41721131 -142567531 - AluSg SINE Alu -16 294 1 705 128 18 0 chr4 41721147 41721256 -142567406 - HY1 scRNA scRNA -1 111 1 639 228 85 38 chr4 41722094 41722305 -142566357 + MIR SINE MIR 31 251 -11 2160 133 36 30 chr4 41722312 41722674 -142565988 + THE1B LTR MaLR 1 364 0 244 233 17 17 chr4 41722980 41723040 -142565622 - MIR SINE MIR 0 262 203 576 197 8 39 chr4 41723042 41723169 -142565493 + L2 LINE L2 3191 3313 0 660 307 83 80 chr4 41723479 41724283 -142564379 + L3 LINE CR1 768 1574 -3 1303 201 3 98 chr4 41725277 41725595 -142563067 + AluJo SINE Alu 1 288 -14 2069 90 7 13 chr4 41725612 41725912 -142562750 + AluSq SINE Alu 5 302 -11 22 0 0 0 chr4 41726482 41726504 -142562158 + AT_rich Low_complexity Low_complexity 1 22 0 372 43 0 0 chr4 41726504 41726550 -142562112 + (CA)n Simple_repeat Simple_repeat 2 47 0 288 276 195 8 chr4 41727234 41727357 -142561305 + L2 LINE L2 3123 3268 -4 466 286 130 6 chr4 41728116 41728277 -142560385 + MIR3 SINE MIR 18 198 -10 966 210 80 5 chr4 41729046 41729420 -142559242 + MLT1D LTR MaLR 45 505 0 2336 54 7 0 chr4 41729489 41729784 -142558878 + AluY SINE Alu 3 299 -12 1867 144 0 3 chr4 41730686 41731003 -142557659 + AluSx SINE Alu 1 316 0 182 311 16 0 chr4 41731935 41731996 -142556666 + MIR3 SINE MIR 113 174 -34 1968 122 0 11 chr4 41732628 41732821 -142555841 - AluSx SINE Alu 0 326 136 2297 69 3 7 chr4 41732821 41733125 -142555537 - AluSc SINE Alu -6 303 1 1968 122 0 11 chr4 41733125 41733259 -142555403 - AluSx SINE Alu -190 136 2 201 333 118 20 chr4 41733420 41733522 -142555140 - L3 LINE CR1 -73 1504 1393 1100 139 0 0 chr4 41733568 41733734 -142554928 - FRAM SINE Alu -11 165 1 327 330 0 0 chr4 41733744 41733832 -142554830 - L3 LINE CR1 -199 1378 1291 202 256 0 0 chr4 41734040 41734079 -142554583 + MIR SINE MIR 223 261 -1 2322 91 0 0 chr4 41734149 41734456 -142554206 - AluSx SINE Alu -5 307 1 1841 141 0 3 chr4 41736161 41736471 -142552191 - AluSx SINE Alu 0 309 1 207 0 0 0 chr4 41736715 41736738 -142551924 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 342 346 43 39 chr4 41737874 41738082 -142550580 + L1ME4a LINE L1 5843 6051 -70 400 302 101 0 chr4 41738254 41738403 -142550259 - MIR SINE MIR -80 182 19 219 211 18 35 chr4 41738702 41738759 -142549903 - L2 LINE L2 -1 3271 3216 316 240 73 31 chr4 41739180 41739276 -142549386 + MIR SINE MIR 44 143 -65 243 0 0 0 chr4 41740080 41740107 -142548555 + (A)n Simple_repeat Simple_repeat 1 27 0 1781 163 13 0 chr4 41740772 41741073 -142547589 + AluSx SINE Alu 1 305 -7 495 211 0 0 chr4 41741126 41741221 -142547441 + U13 snRNA snRNA 1 95 -9 816 226 21 21 chr4 41741755 41741941 -142546721 - MER5A DNA MER1_type 0 189 4 891 173 64 0 chr4 41741941 41742114 -142546548 + AluJo SINE Alu 2 185 -127 347 161 86 49 chr4 41742121 41742202 -142546460 + MER69 DNA AcHobo 60 143 -1083 327 167 0 17 chr4 41742225 41742285 -142546377 + MER69 DNA AcHobo 2468 2526 0 251 320 160 28 chr4 41742586 41742767 -142545895 + MIR SINE MIR 51 255 -7 654 201 162 7 chr4 41742842 41742996 -142545666 - MER58A DNA MER1_type -1 223 46 1991 96 0 113 chr4 41743041 41743376 -142545286 + AluSx SINE Alu 1 297 -5 1598 205 18 71 chr4 41743917 41744366 -142544296 - L1ME LINE L1 -452 5714 5290 1056 218 120 0 chr4 41744365 41744631 -142544031 + L1ME1 LINE L1 5699 5996 -170 * 2117 137 3 0 chr4 41744943 41745250 -142543412 + AluSx SINE Alu 1 308 -4 306 0 0 0 chr4 41745810 41745844 -142542818 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1855 129 11 0 chr4 41745846 41746124 -142542538 - AluSc SINE Alu -28 281 1 2160 108 7 3 chr4 41746184 41746490 -142542172 - AluSx SINE Alu -5 307 1 410 273 137 19 chr4 41746589 41746750 -142541912 + MER5A DNA MER1_type 10 189 0 306 333 40 0 chr4 41746902 41747001 -142541661 - L2 LINE L2 -33 3239 3137 421 139 23 47 chr4 41747226 41747312 -142541350 - AluSg/x SINE Alu -12 298 215 1615 190 0 7 chr4 41749289 41749584 -142539078 - AluJb SINE Alu -19 293 1 892 288 73 55 chr4 41749863 41749981 -142538681 + L1MEd LINE L1 553 667 -5643 1974 86 60 20 chr4 41749981 41750282 -142538380 - AluSq SINE Alu 0 313 1 892 288 73 55 chr4 41750282 41750438 -142538224 + L1MEd LINE L1 667 819 -5491 775 197 0 0 chr4 41750438 41750565 -142538097 - FLAM_A SINE Alu -6 127 1 892 288 73 55 chr4 41750565 41751030 -142537632 + L1MEd LINE L1 819 1332 -4978 1998 166 37 6 chr4 41751030 41751379 -142537283 + MLT1A1 LTR MaLR 3 362 -3 892 288 73 55 chr4 41751379 41751684 -142536978 + L1MEd LINE L1 1332 1630 -4680 1475 196 29 7 chr4 41751712 41751988 -142536674 + AluJo SINE Alu 1 282 -30 1464 84 0 10 chr4 41751989 41752192 -142536470 + AluY SINE Alu 2 202 -109 328 325 72 6 chr4 41752482 41752648 -142536014 - MIR SINE MIR -67 195 19 1988 125 0 10 chr4 41752738 41753035 -142535627 + AluSx SINE Alu 1 294 -18 543 184 0 19 chr4 41753050 41753153 -142535509 + MLT1D LTR MaLR 84 184 -321 225 237 0 51 chr4 41753158 41753179 -142535483 + (TA)n Simple_repeat Simple_repeat 1 22 -34 1546 112 126 11 chr4 41753179 41753448 -142535214 + AluSx SINE Alu 1 300 -12 225 237 0 51 chr4 41753448 41753485 -142535177 + (TA)n Simple_repeat Simple_repeat 22 56 0 315 186 86 0 chr4 41753490 41753560 -142535102 - MLT1D LTR MaLR -429 76 1 252 288 123 46 chr4 41753657 41753876 -142534786 + MIR SINE MIR 18 253 -9 1230 158 37 46 chr4 41754577 41754818 -142533844 - AluJo SINE Alu -12 300 62 1228 126 0 0 chr4 41754938 41755128 -142533534 + AluSq SINE Alu 121 310 -3 757 280 69 13 chr4 41755367 41755599 -142533063 - MIR SINE MIR -10 252 8 1749 98 119 7 chr4 41755684 41755961 -142532701 - AluSx SINE Alu -4 308 1 4974 163 23 71 chr4 41756253 41757535 -142531127 - L1MB7 LINE L1 -16 6168 4973 2137 85 3 27 chr4 41758447 41758741 -142529921 + AluSg SINE Alu 3 289 -21 1884 134 17 0 chr4 41758750 41759041 -142529621 + AluSx SINE Alu 1 296 -16 388 230 140 0 chr4 41759584 41759684 -142528978 + L2 LINE L2 3195 3308 -5 295 227 7 39 chr4 41759685 41759697 -142528965 + GA-rich Low_complexity Low_complexity 2 13 -137 1822 177 3 3 chr4 41759697 41760007 -142528655 + AluSx SINE Alu 1 310 -2 295 227 7 39 chr4 41760007 41760148 -142528514 + GA-rich Low_complexity Low_complexity 13 150 0 2321 90 0 0 chr4 41760337 41760638 -142528024 - AluSq SINE Alu -12 301 1 453 279 42 79 chr4 41760671 41760742 -142527920 - L3 LINE CR1 -8 1569 1497 815 187 147 20 chr4 41760742 41760940 -142527722 - MER58A DNA MER1_type 0 224 2 453 279 42 79 chr4 41760940 41761108 -142527554 - L3 LINE CR1 -80 1497 1339 2033 231 72 23 chr4 41761234 41761800 -142526862 + L1MEc LINE L1 37 630 -5766 2115 79 0 39 chr4 41762016 41762321 -142526341 - AluSx SINE Alu -19 293 1 413 330 0 0 chr4 41762334 41762440 -142526222 - L1MEd LINE L1 -5448 671 566 450 0 0 0 chr4 41762791 41762841 -142525821 + (TTTTC)n Simple_repeat Simple_repeat 5 54 0 1882 125 38 3 chr4 41762863 41763151 -142525511 - AluSx SINE Alu -14 298 1 851 159 76 0 chr4 41763305 41763450 -142525212 + AluSg/x SINE Alu 138 293 -19 435 68 0 0 chr4 41763473 41763532 -142525130 + (GGAA)n Simple_repeat Simple_repeat 2 60 0 21 0 0 0 chr4 41764134 41764155 -142524507 + AT_rich Low_complexity Low_complexity 1 21 0 302 301 148 22 chr4 41764162 41764213 -142524449 - MIR SINE MIR -5 257 214 2623 239 37 5 chr4 41764213 41764806 -142523856 + MER90 LTR ERV1 3 614 0 302 301 148 22 chr4 41764806 41764937 -142523725 - MIR SINE MIR -48 214 52 2078 117 3 17 chr4 41765492 41765811 -142522851 - AluSx SINE Alu 0 312 1 22 0 0 0 chr4 41765811 41765833 -142522829 + AT_rich Low_complexity Low_complexity 1 22 0 1988 151 0 7 chr4 41766274 41766573 -142522089 + AluJb SINE Alu 1 297 -15 591 111 11 0 chr4 41766611 41766701 -142521961 + MER53 DNA DNA 99 189 0 29 28 0 0 chr4 41766904 41766940 -142521722 + AT_rich Low_complexity Low_complexity 1 36 0 754 285 45 12 chr4 41767677 41767919 -142520743 + LTR33 LTR ERVL 38 287 -234 2136 125 0 22 chr4 41767921 41768240 -142520422 - AluSx SINE Alu 0 312 1 30 27 0 0 chr4 41768240 41768277 -142520385 + AT_rich Low_complexity Low_complexity 1 37 0 1803 156 11 7 chr4 41768307 41768590 -142520072 + AluJb SINE Alu 3 286 -26 1945 110 20 20 chr4 41768882 41769182 -142519480 + AluSp SINE Alu 14 313 0 254 210 32 0 chr4 41769362 41769424 -142519238 + L1MB7 LINE L1 5945 6008 -176 301 193 0 57 chr4 41769446 41769534 -142519128 - L2 LINE L2 -62 3251 3169 1086 322 163 47 chr4 41769841 41770814 -142517848 - L2 LINE L2 -558 2756 1898 2282 105 10 0 chr4 41770814 41771118 -142517544 + AluSx SINE Alu 1 307 -5 1086 322 163 47 chr4 41771118 41771299 -142517363 - L2 LINE L2 -1416 1898 1740 703 269 33 42 chr4 41771299 41771511 -142517151 - MER63A DNA MER1_type 0 210 1 1086 322 163 47 chr4 41771511 41771965 -142516697 - L2 LINE L2 -1574 1740 959 310 204 41 129 chr4 41771973 41772120 -142516542 - L3 LINE CR1 -393 1184 1051 369 62 0 0 chr4 41774430 41774478 -142514184 + (T)n Simple_repeat Simple_repeat 1 48 0 963 182 0 12 chr4 41774484 41774654 -142514008 - AluJo SINE Alu -144 168 1 410 289 0 26 chr4 41774654 41774768 -142513894 + MIR3 SINE MIR 50 160 -48 340 294 25 10 chr4 41774776 41774942 -142513720 + MIR SINE MIR 34 261 -1 441 74 12 25 chr4 41775326 41775407 -142513255 - AluSp SINE Alu -1 312 233 1832 95 4 0 chr4 41775451 41775683 -142512979 - AluSp SINE Alu -80 233 1 2388 117 11 25 chr4 41776062 41776327 -142512335 - MER47A DNA MER2_type -1957 366 106 2395 86 3 0 chr4 41776327 41776628 -142512034 - AluY SINE Alu -9 302 1 2388 117 11 25 chr4 41776628 41776729 -142511933 - MER47A DNA MER2_type -2217 106 5 1934 135 0 10 chr4 41776784 41777081 -142511581 + AluSx SINE Alu 18 311 -1 332 273 113 54 chr4 41777102 41777729 -142510933 + L1M4 LINE L1 3024 3687 -2459 1084 193 169 49 chr4 41777731 41778057 -142510605 + MLT1A1 LTR MaLR 1 365 0 530 320 49 0 chr4 41778064 41778311 -142510351 + L1M4 LINE L1 3692 3950 -2196 335 196 18 0 chr4 41778338 41778394 -142510268 + Tigger5 DNA MER2_type 2 58 -2265 * 977 109 0 0 chr4 41778392 41778530 -142510132 + Tigger5 DNA MER2_type 2058 2195 -128 1899 138 62 0 chr4 41778592 41778881 -142509781 + AluSq SINE Alu 1 307 -6 627 186 59 0 chr4 41778881 41778999 -142509663 + Tigger5 DNA MER2_type 2199 2323 0 2178 115 0 3 chr4 41779690 41779985 -142508677 + AluSx SINE Alu 1 294 -18 2340 111 0 0 chr4 41779998 41780304 -142508358 + AluSg SINE Alu 2 307 -3 909 100 23 8 chr4 41780310 41780440 -142508222 + AluSq/x SINE Alu 1 132 -181 4533 153 30 24 chr4 41780441 41781309 -142507353 + L1MB2 LINE L1 5299 6171 0 281 315 69 39 chr4 41781335 41781538 -142507124 + L2 LINE L2 2197 2405 -909 267 103 0 0 chr4 41781550 41781589 -142507073 + (TGAA)n Simple_repeat Simple_repeat 4 42 0 4704 138 12 81 chr4 41781665 41781960 -142506702 - L1MB8 LINE L1 0 6178 5864 2309 114 0 0 chr4 41781960 41782266 -142506396 - AluSx SINE Alu -6 306 1 4704 138 12 81 chr4 41782266 41782868 -142505794 - L1MB8 LINE L1 -314 5864 5374 862 196 0 0 chr4 41782868 41783001 -142505661 - FLAM_C SINE Alu 0 133 1 4704 138 12 81 chr4 41783001 41783258 -142505404 - L1MB8 LINE L1 -804 5374 5101 722 152 0 0 chr4 41783261 41783366 -142505296 - FLAM_C SINE Alu -6 137 33 3412 209 23 25 chr4 41783372 41784089 -142504573 - L1MB8 LINE L1 -1047 5099 4383 1885 169 0 7 chr4 41784089 41784397 -142504265 - AluJb SINE Alu -6 306 1 3412 209 23 25 chr4 41784397 41784510 -142504152 - L1MB8 LINE L1 -1763 4383 4271 2292 95 16 0 chr4 41785047 41785351 -142503311 - AluSc SINE Alu 0 309 1 385 286 101 71 chr4 41785461 41785535 -142503127 - L1MEc LINE L1 -4143 2253 2183 1927 163 6 19 chr4 41785535 41785848 -142502814 - AluJb SINE Alu -3 309 1 385 286 101 71 chr4 41785848 41785859 -142502803 - L1MEc LINE L1 -4213 2183 2174 243 0 0 0 chr4 41785859 41785886 -142502776 + (ATTG)n Simple_repeat Simple_repeat 2 28 0 1834 149 7 0 chr4 41785888 41786169 -142502493 - AluSx SINE Alu -29 283 1 385 286 101 71 chr4 41786169 41786415 -142502247 - L1MEc LINE L1 -4222 2174 1908 931 148 32 0 chr4 41786559 41786714 -142501948 - AluY SINE Alu -21 290 131 2235 161 66 2 chr4 41837992 41838401 -142450261 + L1MB7 LINE L1 5721 6155 -29 2823 81 43 28 chr4 41838414 41838785 -142449877 - L1PA14 LINE L1 -3 6158 5779 1925 125 0 78 chr4 41838785 41839120 -142449542 - AluSx SINE Alu -3 309 1 2823 81 43 28 chr4 41839120 41839145 -142449517 - L1PA14 LINE L1 -382 5779 5756 401 176 0 0 chr4 41839400 41839468 -142449194 - MLT1C LTR MaLR -2 503 436 1023 97 15 0 chr4 41839468 41839602 -142449060 + AluSq/x SINE Alu 1 136 -176 705 196 93 55 chr4 41839620 41839674 -142448988 - MLT1C LTR MaLR -51 416 365 2356 96 0 0 chr4 41839674 41839966 -142448696 + AluSx SINE Alu 1 292 -20 705 196 93 55 chr4 41839966 41840272 -142448390 - MLT1C LTR MaLR -102 365 6 525 315 87 8 chr4 41840865 41841106 -142447556 + Charlie8 DNA MER1_type 1 260 -2157 244 314 121 0 chr4 41841677 41841817 -142446845 + Tigger8 DNA MER2_type 331 487 -179 551 157 0 39 chr4 41841893 41841995 -142446667 + L1M3 LINE L1 5727 5824 -359 845 139 0 8 chr4 41841996 41842118 -142446544 + 5S rRNA rRNA 1 121 0 304 149 15 15 chr4 41842118 41842185 -142446477 + CT-rich Low_complexity Low_complexity 1 67 0 1463 141 86 112 chr4 41842854 41843158 -142445504 - AluJb SINE Alu -5 297 2 21 0 0 0 chr4 41843341 41843362 -142445300 + AT_rich Low_complexity Low_complexity 1 21 0 471 254 60 19 chr4 41844000 41844199 -142444463 + LTR33 LTR ERVL 1 193 -330 341 355 7 0 chr4 41844251 41844392 -142444270 + LTR33 LTR ERVL 299 440 -81 1629 203 61 81 chr4 41844456 41844757 -142443905 - MLT1C LTR MaLR 0 467 177 2321 102 0 7 chr4 41844757 41845061 -142443601 - AluSg SINE Alu -8 302 1 1629 203 61 81 chr4 41845061 41845231 -142443431 - MLT1C LTR MaLR -290 177 5 1468 160 36 59 chr4 41845943 41846250 -142442412 - AluJo SINE Alu -7 305 6 701 264 50 10 chr4 41846815 41847016 -142441646 - MIR SINE MIR -1 261 53 2030 130 3 40 chr4 41847139 41847463 -142441199 - AluJo SINE Alu 0 312 1 22 35 0 0 chr4 41847493 41847522 -142441140 + AT_rich Low_complexity Low_complexity 1 29 0 289 264 144 0 chr4 41847659 41847784 -142440878 - MER5A DNA MER1_type -3 186 44 2294 74 14 3 chr4 41847784 41848080 -142440582 + AluY SINE Alu 1 299 -12 213 222 60 120 chr4 41848080 41848100 -142440562 + MER5A DNA MER1_type 147 167 -22 2096 113 10 16 chr4 41848308 41848619 -142440043 + AluSc SINE Alu 1 309 0 261 139 0 0 chr4 41848626 41848669 -142439993 + (GGGA)n Simple_repeat Simple_repeat 2 44 0 1510 161 15 29 chr4 41848986 41849260 -142439402 + AluJo SINE Alu 17 286 -26 288 264 46 46 chr4 41849283 41849370 -142439292 - L2 LINE L2 -37 3276 3190 214 273 0 0 chr4 41849394 41849438 -142439224 + MER5A DNA MER1_type 30 73 -116 313 98 39 0 chr4 41849455 41849506 -142439156 + MER5A DNA MER1_type 52 104 -85 1619 146 55 29 chr4 41849722 41849841 -142438821 + AluJb SINE Alu 1 116 -192 516 105 0 0 chr4 41849841 41849917 -142438745 + (TG)n Simple_repeat Simple_repeat 2 77 0 1619 146 55 29 chr4 41849917 41850098 -142438564 + AluJb SINE Alu 116 308 0 282 215 25 63 chr4 41850240 41850319 -142438343 - MIR SINE MIR -87 175 100 2438 96 0 0 chr4 41851406 41851718 -142436944 + AluSx SINE Alu 1 312 0 1283 183 36 88 chr4 41852216 41852382 -142436280 - AluJo SINE Alu -22 290 146 1579 181 39 3 chr4 41852382 41852664 -142435998 - AluJb SINE Alu -15 297 6 1283 183 36 88 chr4 41852664 41852803 -142435859 - AluJo SINE Alu -166 146 1 3601 112 6 12 chr4 41853676 41854176 -142434486 + LOR1a LTR ERV1 1 497 0 5099 202 71 9 chr4 41854450 41855538 -142433124 + Charlie1a DNA MER1_type 52 1206 -249 760 154 8 0 chr4 41855532 41855649 -142433013 - Tigger7 DNA MER2_type -2102 385 268 * 499 323 34 78 chr4 41855869 41856163 -142432499 - L2 LINE L2 -6 3266 2986 247 204 37 0 chr4 41856163 41856217 -142432445 - L2 LINE L2 -13 3300 3245 343 196 125 45 chr4 41856412 41856524 -142432138 + MER3 DNA MER1_type 43 163 -46 1528 139 58 19 chr4 41856537 41856847 -142431815 + MER3 DNA MER1_type 2233 2554 0 487 270 172 30 chr4 41856847 41857030 -142431632 - MER20B DNA MER1_type -459 324 109 373 104 15 15 chr4 41857052 41857119 -142431543 + MER3 DNA MER1_type 2549 2615 0 1027 116 7 0 chr4 41857166 41857304 -142431358 + AluSg SINE Alu 1 139 -171 327 104 0 0 chr4 41857631 41857679 -142430983 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 1287 258 73 20 chr4 41858113 41858724 -142429938 - MER20B DNA MER1_type -10 773 83 248 358 47 37 chr4 41858813 41859003 -142429659 + MIR SINE MIR 66 257 -5 1492 174 94 14 chr4 41859004 41859280 -142429382 + AluJo SINE Alu 1 298 -14 196 171 29 0 chr4 41859388 41859423 -142429239 + L2 LINE L2 3265 3300 -13 216 304 63 0 chr4 41859753 41859832 -142428830 + MIR3 SINE MIR 114 197 -11 * 782 231 15 31 chr4 41859830 41860025 -142428637 - MIR SINE MIR -10 252 61 1756 76 0 0 chr4 41860784 41860995 -142427667 + AluSq SINE Alu 1 211 -102 3923 105 0 4 chr4 41860995 41861508 -142427154 + MER9 LTR ERVK 1 511 0 647 148 0 9 chr4 41861508 41861616 -142427046 + AluSq SINE Alu 206 312 -1 181 277 21 0 chr4 41861992 41862039 -142426623 - L2 LINE L2 0 3313 3266 249 340 69 21 chr4 41862618 41862762 -142425900 - L2 LINE L2 -557 2757 2607 2218 132 0 87 chr4 41862869 41863248 -142425414 - MER7A DNA MER2_type -1 345 2 297 0 0 0 chr4 41863763 41863796 -142424866 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 1814 111 0 23 chr4 41863801 41864062 -142424600 - AluSq SINE Alu -36 277 23 364 189 14 0 chr4 41864695 41864769 -142423893 - MER116 DNA Mariner 0 80 6 506 138 85 0 chr4 41864802 41864896 -142423766 - MER58 DNA MER1_type -1 2419 2318 379 253 88 0 chr4 41864908 41864999 -142423663 - MER58 DNA MER1_type -2321 99 1 2007 131 0 0 chr4 41865284 41865558 -142423104 - AluJb SINE Alu -12 300 27 * 2238 76 0 70 chr4 41865556 41865884 -142422778 - AluY SINE Alu -6 305 1 1641 171 4 11 chr4 41866305 41866585 -142422077 - AluJo SINE Alu -34 278 1 420 237 112 20 chr4 41867386 41867538 -142421124 + MIR SINE MIR 96 261 -1 231 314 92 72 chr4 41867602 41867809 -142420853 - L2 LINE L2 -18 3254 3044 552 101 0 0 chr4 41869126 41869205 -142419457 + HERV9 LTR ERV1 4866 4944 -3455 2098 151 104 126 chr4 41869206 41870106 -142418556 + HERV9 LTR ERV1 840 1720 -5176 * 4636 94 13 2 chr4 41870101 41870737 -142417925 + HERV9 LTR ERV1 7757 8399 0 6017 78 71 20 chr4 41870737 41871523 -142417139 + LTR12 LTR ERV1 1 826 0 636 235 16 71 chr4 41871553 41871736 -142416926 - MER5B DNA MER1_type -5 173 1 281 244 11 44 chr4 41872031 41872121 -142416541 + L2 LINE L2 3223 3309 -4 259 116 0 0 chr4 41872765 41872808 -142415854 - L1MB7 LINE L1 0 6184 6142 5509 183 11 3 chr4 41872808 41873843 -142414819 + L1P LINE L1 4228 5270 -876 604 263 19 44 chr4 41873857 41874062 -142414600 + LTR4 LTR ERV1 1 200 -396 256 224 41 0 chr4 41874119 41874168 -142414494 + LTR4 LTR ERV1 307 357 -239 942 209 20 65 chr4 41874254 41874546 -142414116 + LTR4 LTR ERV1 317 595 -1 1283 71 142 27 chr4 41874547 41874772 -142413890 + L1P4 LINE L1 5268 5518 -643 1918 130 7 7 chr4 41874934 41875226 -142413436 - AluSc SINE Alu -17 292 1 2085 116 0 7 chr4 41876284 41876604 -142412058 - AluSx SINE Alu 0 318 1 1192 171 198 53 chr4 41876904 41877278 -142411384 + MSTC LTR MaLR 1 428 0 258 331 35 125 chr4 41877585 41877872 -142410790 - L2 LINE L2 0 3272 3012 181 250 0 0 chr4 41878011 41878047 -142410615 + MIR SINE MIR 39 74 -134 610 244 187 14 chr4 41878479 41878688 -142409974 - MIR SINE MIR 0 262 18 209 152 0 43 chr4 41879659 41879705 -142408957 + (CATATA)n Simple_repeat Simple_repeat 3 46 0 458 233 90 63 chr4 41879878 41880101 -142408561 - MARNA DNA Mariner -343 243 15 340 264 95 27 chr4 41880483 41880631 -142408031 + L1MC4a LINE L1 5731 5888 -1920 553 213 90 13 chr4 41880690 41880845 -142407817 - L1MC5 LINE L1 -51 7910 7744 40 37 0 0 chr4 41880962 41881016 -142407646 + AT_rich Low_complexity Low_complexity 1 54 0 1835 108 4 16 chr4 41881016 41881274 -142407388 - AluSg SINE Alu -12 298 44 1939 132 7 3 chr4 41881276 41881564 -142407098 - AluSx SINE Alu -18 294 6 1513 144 76 47 chr4 41881713 41881990 -142406672 - AluJo SINE Alu -24 288 4 23 33 0 0 chr4 41885757 41885787 -142402875 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr4 41886158 41886186 -142402476 + AT_rich Low_complexity Low_complexity 1 28 0 2290 71 41 0 chr4 41886218 41886512 -142402150 + AluSp SINE Alu 1 306 -7 2156 177 18 13 chr4 41886630 41887015 -142401647 + LOR1b LTR ERV1 75 461 0 289 196 54 0 chr4 41887017 41887073 -142401589 - L1M4 LINE L1 -519 5665 5607 375 23 0 0 chr4 41887119 41887163 -142401499 + (TA)n Simple_repeat Simple_repeat 1 44 0 1013 175 22 0 chr4 41887163 41887346 -142401316 - L1M4 LINE L1 -579 5599 5413 265 250 138 0 chr4 41887437 41887517 -142401145 - L2 LINE L2 -2 3311 3221 457 223 11 0 chr4 41887887 41887981 -142400681 - L2 LINE L2 0 3313 3219 895 287 151 31 chr4 41888028 41888453 -142400209 + MLT1K LTR MaLR 1 476 0 652 125 0 0 chr4 41889368 41889472 -142399190 + L1MA8 LINE L1 6186 6289 -2 2263 102 0 0 chr4 41889632 41889926 -142398736 + AluY SINE Alu 1 294 -17 1059 165 41 18 chr4 41890151 41890321 -142398341 - FAM SINE Alu -1 174 1 296 276 117 37 chr4 41890420 41890583 -142398079 - MARNA DNA Mariner -286 300 125 180 241 37 0 chr4 41890610 41890664 -142397998 - L2 LINE L2 -225 3047 2992 2214 117 0 0 chr4 41890700 41891017 -142397645 + AluSx SINE Alu 1 317 0 2714 26 3 0 chr4 41892532 41892840 -142395822 - AluY SINE Alu -2 309 1 342 0 0 0 chr4 41893342 41893380 -142395282 + (CA)n Simple_repeat Simple_repeat 1 38 0 722 306 115 21 chr4 41893528 41894057 -142394605 + L1MC4a LINE L1 5254 5832 -1976 2264 112 0 0 chr4 41894086 41894382 -142394280 - AluSx SINE Alu -16 296 1 525 233 267 0 chr4 41894694 41894904 -142393758 + L1ME3A LINE L1 5904 6169 -1 1331 126 36 22 chr4 41895425 41895647 -142393015 - MER2 DNA MER2_type 0 345 121 709 190 92 7 chr4 41895649 41895791 -142392871 + AluJo SINE Alu 4 157 -155 749 154 7 44 chr4 41895891 41896027 -142392635 + FRAM SINE Alu 43 173 -3 490 184 156 7 chr4 41896857 41896998 -142391664 - L1ME3A LINE L1 -5 6165 6004 487 355 47 41 chr4 41897071 41897389 -142391273 - L2 LINE L2 -5 3267 2948 266 292 242 8 chr4 41897450 41897690 -142390972 - L2 LINE L2 -469 2845 2550 2315 90 3 7 chr4 41897846 41898145 -142390517 + AluSp SINE Alu 10 307 -6 298 301 0 21 chr4 41898435 41898528 -142390134 - L2 LINE L2 -1366 1948 1858 1390 127 122 21 chr4 41898788 41899025 -142389637 - Tigger7 DNA MER2_type 0 2491 2231 2464 85 0 0 chr4 41899498 41899803 -142388859 - AluSc SINE Alu -4 305 1 180 305 189 37 chr4 41901389 41901579 -142387083 + L2 LINE L2 3080 3298 -15 254 250 42 0 chr4 41901586 41901658 -142387004 - MIR SINE MIR -8 254 180 333 0 0 0 chr4 41901757 41901794 -142386868 + (CA)n Simple_repeat Simple_repeat 2 38 0 1770 127 20 38 chr4 41902764 41903056 -142385606 + AluJo SINE Alu 5 291 -21 2023 143 10 0 chr4 41903322 41903616 -142385046 - AluSq SINE Alu -16 297 1 26 30 0 0 chr4 41904520 41904553 -142384109 + AT_rich Low_complexity Low_complexity 1 33 0 233 255 122 20 chr4 41905020 41905118 -142383544 + MIR3 SINE MIR 78 185 -23 1683 205 106 133 chr4 41905305 41905967 -142382695 + MLT1E1 LTR MaLR 11 654 0 2073 128 0 3 chr4 41906029 41906327 -142382335 - AluSx SINE Alu -15 297 1 429 294 51 34 chr4 41906883 41907060 -142381602 + MER5A DNA MER1_type 7 186 -3 190 379 105 0 chr4 41907067 41907162 -142381500 - MIR3 SINE MIR -48 160 56 1650 107 94 4 chr4 41907162 41907395 -142381267 + AluSc SINE Alu 37 290 -19 433 222 62 0 chr4 41907826 41907907 -142380755 + AluJ/FLAM SINE Alu 2 87 -225 2284 119 3 0 chr4 41907907 41908218 -142380444 + AluSq SINE Alu 1 312 -1 1100 123 0 6 chr4 41908218 41908397 -142380265 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 507 45 0 0 chr4 41908401 41908467 -142380195 + (GAAA)n Simple_repeat Simple_repeat 2 67 0 1515 130 18 80 chr4 41908528 41908804 -142379858 + AluJb SINE Alu 39 297 -15 809 240 138 22 chr4 41909055 41909280 -142379382 - MIR SINE MIR -6 256 6 1857 155 3 0 chr4 41909584 41909874 -142378788 - AluSx SINE Alu -16 296 6 21 0 0 0 chr4 41910733 41910754 -142377908 + AT_rich Low_complexity Low_complexity 1 21 0 1850 151 28 0 chr4 41910932 41911216 -142377446 - AluJb SINE Alu -20 292 1 27 73 0 0 chr4 41911299 41911354 -142377308 + AT_rich Low_complexity Low_complexity 1 55 0 203 359 75 0 chr4 41913822 41913928 -142374734 + L3 LINE CR1 1458 1571 -6 180 333 119 0 chr4 41913986 41914070 -142374592 + MIR SINE MIR 104 197 -65 334 159 0 16 chr4 41914355 41914418 -142374244 + AluS SINE Alu 1 62 -241 2218 104 7 3 chr4 41915095 41915394 -142373268 - AluSc SINE Alu -9 300 1 601 245 187 98 chr4 41915518 41915995 -142372667 + MLT1H LTR MaLR 21 539 -10 596 227 81 10 chr4 41916313 41916511 -142372151 + L1ME4a LINE L1 5704 5915 -206 1643 211 142 56 chr4 41916891 41917582 -142371080 - L1MC5 LINE L1 -435 7526 6777 573 311 90 43 chr4 41917587 41918141 -142370521 - HAL1b LINE L1 -708 640 61 2432 79 3 0 chr4 41918392 41918696 -142369966 - AluY SINE Alu -5 306 2 352 246 205 33 chr4 41918834 41918956 -142369706 + L2 LINE L2 3152 3294 -19 292 279 52 26 chr4 41918962 41919116 -142369546 + L1ME4a LINE L1 5963 6120 -1 420 352 61 12 chr4 41920582 41920829 -142367833 - MIR SINE MIR -3 259 1 1027 169 47 59 chr4 41921252 41921488 -142367174 + MER46A DNA MER2_type 4 236 0 494 290 68 12 chr4 41921510 41921672 -142366990 - MIR SINE MIR -28 234 64 6432 66 27 23 chr4 41921745 41923239 -142365423 + SVA Other Other 3 1386 0 283 255 21 32 chr4 41923416 41923510 -142365152 - MIR SINE MIR -55 207 115 255 172 17 52 chr4 41923797 41923855 -142364807 + GA-rich Low_complexity Low_complexity 5 60 0 185 282 0 70 chr4 41924542 41924613 -142364049 + L2 LINE L2 3009 3074 -198 723 323 47 0 chr4 41924904 41925136 -142363526 + MIR SINE MIR 18 260 -2 781 173 0 15 chr4 41925191 41925313 -142363349 + FLAM_C SINE Alu 2 123 -189 324 0 0 0 chr4 41925313 41925349 -142363313 + (CATA)n Simple_repeat Simple_repeat 2 37 0 2138 108 20 3 chr4 41925863 41926169 -142362493 - AluSx SINE Alu -1 311 1 516 232 128 97 chr4 41927101 41927616 -142361046 - MLT1L LTR MaLR -19 492 7 537 310 132 31 chr4 41927955 41928534 -142360128 + L2 LINE L2 2622 3264 -49 798 224 101 32 chr4 41928771 41928990 -142359672 + MIR SINE MIR 14 247 -15 2031 85 52 4 chr4 41929015 41929336 -142359326 + AluSq SINE Alu 1 334 0 1904 92 0 0 chr4 41929567 41929807 -142358855 + AluSq SINE Alu 59 298 -15 328 91 0 0 chr4 41931277 41931321 -142357341 - Alu SINE Alu -259 44 1 21 57 0 0 chr4 41932020 41932055 -142356607 + AT_rich Low_complexity Low_complexity 1 35 0 2293 89 0 26 chr4 41932117 41932430 -142356232 + AluSx SINE Alu 1 305 -7 199 316 137 34 chr4 41933571 41933688 -142354974 + MIR SINE MIR 63 191 -71 1397 162 3 114 chr4 41934525 41934858 -142353804 + AluJo SINE Alu 1 296 -16 1713 63 0 0 chr4 41935330 41935535 -142353127 - AluY SINE Alu -14 297 93 1412 183 60 7 chr4 41935585 41935869 -142352793 + AluJb SINE Alu 1 299 -13 26 30 0 0 chr4 41936000 41936033 -142352629 + AT_rich Low_complexity Low_complexity 1 33 0 2391 280 168 57 chr4 41936985 41937727 -142350935 + HAL1 LINE L1 307 965 -1542 1485 181 3 35 chr4 41937727 41938009 -142350653 - AluJo SINE Alu -17 295 23 2391 280 168 57 chr4 41938009 41939149 -142349513 + HAL1 LINE L1 965 2398 -109 676 273 76 98 chr4 41939652 41940191 -142348471 + LTR67 LTR ERVL 31 557 0 2420 84 0 0 chr4 41940386 41940683 -142347979 - AluSc SINE Alu -12 297 1 1419 109 0 0 chr4 41941535 41941727 -142346935 - AluSq SINE Alu -8 305 114 583 85 110 0 chr4 41941764 41941846 -142346816 - AluSq SINE Alu -179 134 44 264 100 0 0 chr4 41942095 41942135 -142346527 + (TG)n Simple_repeat Simple_repeat 2 41 0 689 176 0 25 chr4 41943401 41943520 -142345142 - FRAM SINE Alu -6 170 55 314 238 67 30 chr4 41943570 41943710 -142344952 + L1ME LINE L1 5677 5822 -299 2030 112 0 11 chr4 41943718 41944004 -142344658 + AluY SINE Alu 1 283 -28 2391 91 3 0 chr4 41944246 41944553 -142344109 + AluSc SINE Alu 1 308 -1 271 209 60 0 chr4 41944645 41944712 -142343950 - HsTC2 DNA Tc2 -3 1895 1825 433 243 9 9 chr4 41944757 41944864 -142343798 - MER104 DNA Tc2 -72 108 2 2244 123 3 0 chr4 41944981 41945290 -142343372 + AluSp SINE Alu 1 310 -3 832 123 0 0 chr4 41945446 41945552 -142343110 + U6 snRNA snRNA 2 107 0 283 191 58 14 chr4 41945552 41945638 -142343024 + L1MA9 LINE L1 6213 6291 0 2408 93 0 3 chr4 41945807 41946108 -142342554 + AluY SINE Alu 1 300 -11 4587 199 44 11 chr4 41946695 41947759 -142340903 + L1 LINE L1 3148 4251 -1895 198 0 0 0 chr4 41947759 41947781 -142340881 + (CA)n Simple_repeat Simple_repeat 1 22 0 4587 199 44 11 chr4 41947781 41947815 -142340847 + L1 LINE L1 4251 4282 -1864 944 206 0 0 chr4 41947826 41947991 -142340671 + FRAM SINE Alu 1 165 -11 485 270 103 0 chr4 41948005 41948131 -142340531 + L1 LINE L1 4497 4635 -1511 1782 174 7 3 chr4 41948263 41948561 -142340101 - AluSx SINE Alu -13 299 1 359 293 72 44 chr4 41948886 41949067 -142339595 - MIR3 SINE MIR -2 206 21 1368 145 30 34 chr4 41950048 41950283 -142338379 - MER46A DNA MER2_type -1 235 2 230 307 148 0 chr4 41950445 41950533 -142338129 - MIR SINE MIR -108 154 54 607 240 16 0 chr4 41951474 41951603 -142337059 + MER94 DNA DNA 1 131 -3 351 300 0 10 chr4 41952413 41952513 -142336149 + L2 LINE L2 3174 3272 0 244 242 0 45 chr4 41952708 41952774 -142335888 + MIR SINE MIR 85 147 -115 1859 264 124 25 chr4 41952883 41952994 -142335668 + L1MC4 LINE L1 6905 7004 -1038 1861 177 0 3 chr4 41952994 41953288 -142335374 + AluSx SINE Alu 1 293 -19 1859 264 124 25 chr4 41953288 41954080 -142334582 + L1MC4 LINE L1 7004 7897 -145 797 179 19 56 chr4 41955091 41955253 -142333409 + FRAM SINE Alu 6 161 -15 1298 81 0 0 chr4 41955262 41955423 -142333239 - AluSc SINE Alu -17 292 132 2351 99 0 6 chr4 41955423 41955735 -142332927 - AluY SINE Alu -1 310 1 241 293 49 0 chr4 41955767 41955849 -142332813 - MIR SINE MIR -105 157 72 208 174 87 22 chr4 41956175 41956221 -142332441 + L2 LINE L2 3219 3267 -5 2254 107 0 3 chr4 41956288 41956586 -142332076 + AluSg SINE Alu 1 297 -13 3631 143 8 9 chr4 41956738 41957264 -142331398 - MER1A DNA MER1_type 0 527 3 542 198 0 0 chr4 41957320 41957416 -142331246 - MER5A DNA MER1_type -83 106 11 2291 90 3 0 chr4 41958673 41958963 -142329699 + AluSg SINE Alu 1 291 -19 304 75 0 0 chr4 41959366 41959406 -142329256 - L1P LINE L1 -1916 4230 4191 957 98 0 15 chr4 41959413 41959546 -142329116 + L1P LINE L1 4103 4233 -1913 284 271 13 33 chr4 41959619 41959770 -142328892 + L1MC5 LINE L1 7607 7754 -207 2160 91 3 52 chr4 41959772 41959907 -142328755 + AluSq SINE Alu 1 141 -172 786 96 29 0 chr4 41959907 41960011 -142328651 + U6 snRNA snRNA 1 107 0 13036 80 14 2 chr4 41960014 41962439 -142326223 + L1PA7 LINE L1 3715 6151 -3 2160 91 3 52 chr4 41962439 41962608 -142326054 + AluSq SINE Alu 143 294 -19 230 376 8 36 chr4 41962852 41963099 -142325563 + L2 LINE L2 2872 3111 -161 522 295 44 57 chr4 41963142 41963233 -142325429 - MIR SINE MIR -11 251 160 2388 91 0 0 chr4 41963233 41963556 -142325106 - AluSg SINE Alu 0 323 1 522 295 44 57 chr4 41963556 41963690 -142324972 - MIR SINE MIR -102 160 28 226 296 45 11 chr4 41963777 41963865 -142324797 - L2 LINE L2 -9 3263 3173 1583 168 16 29 chr4 41963890 41964206 -142324456 + AluJb SINE Alu 1 312 0 269 238 24 103 chr4 41964297 41964423 -142324239 + MIR SINE MIR 74 189 -73 594 179 140 39 chr4 41964658 41964823 -142323839 + L1MC2 LINE L1 6143 6329 -15 1661 168 11 3 chr4 41964823 41965108 -142323554 + AluJb SINE Alu 1 287 -25 594 179 140 39 chr4 41965108 41965121 -142323541 + L1MC2 LINE L1 6329 6339 -5 249 265 0 29 chr4 41965140 41965208 -142323454 - MARNA DNA Mariner -363 223 158 180 0 0 0 chr4 41965489 41965509 -142323153 + (A)n Simple_repeat Simple_repeat 1 20 0 221 261 62 93 chr4 41965951 41966112 -142322550 - MIR SINE MIR -73 189 34 231 298 106 0 chr4 41967543 41967647 -142321015 + LTR33 LTR ERVL 25 139 -382 250 239 46 39 chr4 41967684 41967814 -142320848 + LTR33 LTR ERVL 303 433 -88 378 61 0 0 chr4 41967860 41967909 -142320753 + (TG)n Simple_repeat Simple_repeat 2 50 0 1569 169 14 11 chr4 41967910 41968189 -142320473 - AluJb SINE Alu -29 283 4 23 33 0 0 chr4 41968304 41968334 -142320328 + AT_rich Low_complexity Low_complexity 1 30 0 205 336 32 24 chr4 41968343 41968468 -142320194 + L2 LINE L2 2633 2758 -556 471 303 123 28 chr4 41968707 41969264 -142319398 + L2 LINE L2 2690 3313 0 2063 110 39 0 chr4 41969516 41969798 -142318864 + AluSx SINE Alu 1 293 -19 192 40 0 0 chr4 41969802 41969827 -142318835 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 357 214 34 11 chr4 41969877 41969966 -142318696 - MER58B DNA MER1_type -19 322 232 930 173 9 68 chr4 41970063 41970174 -142318488 - MER58B DNA MER1_type -134 207 113 2138 51 44 14 chr4 41970174 41970476 -142318186 - AluY SINE Alu 0 310 1 930 173 9 68 chr4 41970476 41970583 -142318079 - MER58B DNA MER1_type -228 113 1 1808 148 3 14 chr4 41972064 41972347 -142316315 + AluJo SINE Alu 1 280 -32 1825 113 63 121 chr4 41972549 41972963 -142315699 - MLT1B LTR MaLR 0 390 1 622 160 0 8 chr4 41973539 41973664 -142314998 + L1 LINE L1 5207 5330 -816 735 93 0 0 chr4 41973665 41973762 -142314900 + AluS SINE Alu 1 97 -215 2194 133 0 0 chr4 41973764 41974073 -142314589 + AluSx SINE Alu 1 309 -3 2056 115 19 0 chr4 41974073 41974394 -142314268 + L1P4 LINE L1 5332 5658 -508 542 248 39 0 chr4 41974574 41974703 -142313959 - L2 LINE L2 0 3313 3180 340 299 49 60 chr4 41975020 41975204 -142313458 + L2 LINE L2 3072 3253 -19 887 254 42 121 chr4 41975642 41976123 -142312539 - L2 LINE L2 0 3313 2871 761 246 84 24 chr4 41976335 41976632 -142312030 + L2 LINE L2 2565 2879 -435 449 247 84 13 chr4 41977021 41977267 -142311395 + Charlie8 DNA MER1_type 53 1417 -1000 202 211 0 0 chr4 41977414 41977452 -142311210 + (CATA)n Simple_repeat Simple_repeat 3 40 0 2242 106 0 0 chr4 41977724 41978053 -142310609 + AluSx SINE Alu 1 312 0 1062 185 13 53 chr4 41979941 41980168 -142308494 - AluJo SINE Alu -10 302 85 261 317 141 28 chr4 41980308 41980450 -142308212 + MIR SINE MIR 34 191 -71 198 0 0 0 chr4 41980912 41980934 -142307728 + (A)n Simple_repeat Simple_repeat 1 22 0 781 154 0 31 chr4 41981581 41981711 -142306951 - FLAM_A SINE Alu -6 127 2 793 225 56 123 chr4 41983378 41983675 -142304987 + L1MC2 LINE L1 4766 5023 -1123 1624 138 16 0 chr4 41983675 41983922 -142304740 + AluY SINE Alu 47 297 -14 793 225 56 123 chr4 41983922 41984087 -142304575 + L1MC2 LINE L1 5023 5197 -949 614 164 216 0 chr4 41984165 41984336 -142304326 + L1MC2 LINE L1 5176 5383 -763 1066 232 49 42 chr4 41984490 41984942 -142303720 + L1M4 LINE L1 4149 4603 -1543 760 215 40 4 chr4 41984940 41985168 -142303494 + L1M4 LINE L1 3821 4056 -2090 * 2875 155 63 15 chr4 41985161 41985775 -142302887 + L1MC2 LINE L1 5648 6291 -53 3170 148 6 11 chr4 41986322 41986848 -142301814 + MER1A DNA MER1_type 7 529 0 300 200 0 0 chr4 41987047 41987117 -142301545 + (TG)n Simple_repeat Simple_repeat 1 70 0 412 288 86 58 chr4 41987150 41987335 -142301327 - MLT1K LTR MaLR -156 432 254 2116 132 42 31 chr4 41987335 41987691 -142300971 - THE1B LTR MaLR -4 360 1 412 288 86 58 chr4 41987691 41987848 -142300814 - MLT1K LTR MaLR -334 254 10 254 172 16 47 chr4 41988462 41988526 -142300136 + GA-rich Low_complexity Low_complexity 2 63 0 286 240 251 17 chr4 41990035 41990214 -142298448 + L1ME4a LINE L1 5879 6099 -22 1692 197 0 9 chr4 41990561 41990876 -142297786 + AluJb SINE Alu 1 312 0 260 252 108 45 chr4 41991028 41991139 -142297523 - MIR3 SINE MIR -89 119 2 1217 167 5 51 chr4 41991633 41991778 -142296884 + AluJo SINE Alu 2 135 -177 1981 146 7 0 chr4 41991778 41992073 -142296589 + AluSx SINE Alu 11 307 -5 1217 167 5 51 chr4 41992073 41992142 -142296520 + AluJo SINE Alu 135 206 -106 250 242 0 45 chr4 41992336 41992402 -142296260 + MIR SINE MIR 85 147 -115 1811 84 0 0 chr4 41992942 41993167 -142295495 + AluSg/x SINE Alu 73 297 -13 2332 90 3 3 chr4 41994033 41994332 -142294330 + AluSp SINE Alu 1 299 -14 207 191 0 191 chr4 41994332 41994426 -142294236 - MIR SINE MIR -181 81 6 679 106 8 8 chr4 41994470 41994593 -142294069 + L1MA8 LINE L1 6169 6291 0 2167 118 0 0 chr4 41995037 41995326 -142293336 - AluSx SINE Alu -23 289 1 657 326 25 0 chr4 41995542 41995781 -142292881 + MIR SINE MIR 3 247 -15 241 291 25 0 chr4 41995877 41995956 -142292706 - MIR SINE MIR -107 155 75 481 311 62 6 chr4 41996060 41996221 -142292441 - MER91A DNA MER1_type -26 170 1 360 371 80 17 chr4 41996221 41996645 -142292017 + L2 LINE L2 2634 3084 -188 199 191 0 85 chr4 41997365 41997412 -142291250 + MIR SINE MIR 210 252 -10 * 243 217 0 0 chr4 41997381 41997427 -142291235 + L2 LINE L2 3267 3312 -1 1620 168 20 14 chr4 41998653 41998945 -142289717 - AluJo SINE Alu -18 294 1 182 152 0 22 chr4 41999626 41999672 -142288990 + (TG)n Simple_repeat Simple_repeat 2 46 0 2065 94 0 8 chr4 41999691 41999957 -142288705 - AluSp SINE Alu -14 299 36 26 19 0 58 chr4 42000018 42000070 -142288592 + AT_rich Low_complexity Low_complexity 1 49 0 2936 9 0 0 chr4 42001644 42001962 -142286700 + AluYb8 SINE Alu 1 318 0 2442 87 0 3 chr4 42002139 42002450 -142286212 + AluSg SINE Alu 1 310 0 204 250 31 16 chr4 42002766 42002830 -142285832 - MIR SINE MIR -8 254 190 2895 129 2 32 chr4 42004938 42005411 -142283251 - L1PA15 LINE L1 0 6165 5707 1031 202 14 22 chr4 42006114 42006337 -142282325 + AluJb SINE Alu 85 305 -7 1864 102 11 8 chr4 42007302 42007566 -142281096 - AluSq SINE Alu -5 308 44 22 0 0 0 chr4 42007791 42007813 -142280849 + AT_rich Low_complexity Low_complexity 1 22 0 278 271 112 19 chr4 42008148 42008255 -142280407 + MIR SINE MIR 59 175 -87 277 272 105 9 chr4 42008305 42008419 -142280243 - L2 LINE L2 -4 3309 3185 348 304 78 17 chr4 42008581 42008696 -142279966 - L2 LINE L2 -2 3311 3190 30 27 0 0 chr4 42009088 42009125 -142279537 + AT_rich Low_complexity Low_complexity 1 37 0 31 0 0 0 chr4 42009181 42009212 -142279450 + AT_rich Low_complexity Low_complexity 1 31 0 2457 121 3 24 chr4 42009488 42009860 -142278802 + THE1B LTR MaLR 1 364 0 262 173 76 19 chr4 42009885 42009956 -142278706 - MER5B DNA MER1_type -109 80 1 251 323 91 0 chr4 42010316 42010415 -142278247 + L2 LINE L2 2943 3050 -222 1788 143 11 0 chr4 42010555 42010828 -142277834 - AluSx SINE Alu -6 306 31 714 167 73 27 chr4 42011110 42011260 -142277402 + MER3 DNA MER1_type 1 157 -52 331 291 77 13 chr4 42011263 42011550 -142277112 - L1MEc LINE L1 -937 1639 1512 621 285 74 44 chr4 42011831 42012134 -142276528 - L1MEc LINE L1 -5043 1162 837 2437 70 0 19 chr4 42012134 42012448 -142276214 - AluY SINE Alu -3 308 1 621 285 74 44 chr4 42012448 42012645 -142276017 - L1MEc LINE L1 -5368 837 647 995 197 87 9 chr4 42012737 42012955 -142275707 - MER46A DNA MER2_type -1 235 1 188 363 25 25 chr4 42013190 42013350 -142275312 + L2 LINE L2 2354 2513 -801 21 36 0 0 chr4 42013641 42013669 -142274993 + AT_rich Low_complexity Low_complexity 1 28 0 712 226 6 18 chr4 42014392 42014556 -142274106 + MER4D LTR ERV1 735 896 -7 252 0 0 0 chr4 42015062 42015090 -142273572 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 318 299 79 16 chr4 42015185 42015312 -142273350 - MER5A DNA MER1_type -54 135 1 185 300 0 0 chr4 42015630 42015680 -142272982 + L2 LINE L2 3215 3264 -8 448 281 57 64 chr4 42016494 42016608 -142272054 + MIR SINE MIR 37 148 -114 2170 115 3 3 chr4 42016608 42016904 -142271758 + AluSx SINE Alu 5 300 -12 448 281 57 64 chr4 42016904 42016996 -142271666 + MIR SINE MIR 148 239 -23 2239 94 7 3 chr4 42017531 42017817 -142270845 + AluSx SINE Alu 1 287 -25 518 204 242 13 chr4 42017915 42018072 -142270590 + MIR SINE MIR 20 212 -50 201 291 228 8 chr4 42018253 42018380 -142270282 - MER5A DNA MER1_type 0 189 35 * 222 269 209 15 chr4 42018269 42018403 -142270259 + MER5A DNA MER1_type 30 189 0 266 261 269 0 chr4 42018587 42018706 -142269956 - MIR SINE MIR -6 256 106 237 159 0 0 chr4 42019038 42019082 -142269580 + CT-rich Low_complexity Low_complexity 2 45 0 378 262 90 8 chr4 42019262 42019384 -142269278 - MIR SINE MIR -84 178 47 981 133 0 0 chr4 42019700 42019858 -142268804 + (GAA)n Simple_repeat Simple_repeat 2 159 0 260 269 82 45 chr4 42020313 42020447 -142268215 + MIR3 SINE MIR 32 170 -38 573 223 294 5 chr4 42020657 42020854 -142267808 - MIR SINE MIR 0 262 9 216 0 0 0 chr4 42020991 42021015 -142267647 + (A)n Simple_repeat Simple_repeat 1 24 0 1234 246 35 3 chr4 42021146 42021434 -142267228 + AluJo SINE Alu 2 298 -4 1773 168 84 0 chr4 42022663 42022984 -142265678 - MER46B DNA MER2_type -13 223 1 213 290 224 0 chr4 42023817 42023924 -142264738 + MIR SINE MIR 56 186 -76 303 252 54 9 chr4 42023938 42024049 -142264613 - MER21B LTR ERV1 -113 750 635 3404 108 47 97 chr4 42024090 42024522 -142264140 + LTR36 LTR ERV1 1 453 -158 2516 21 0 4 chr4 42024522 42024802 -142263860 - AluY SINE Alu -11 300 22 3404 108 47 97 chr4 42024802 42024903 -142263759 + LTR36 LTR ERV1 453 558 -53 1682 126 11 121 chr4 42024903 42025251 -142263411 + AluJo SINE Alu 1 310 -2 1847 118 0 33 chr4 42025255 42025525 -142263137 + AluSx SINE Alu 1 261 -51 3404 108 47 97 chr4 42025525 42025623 -142263039 + LTR36 LTR ERV1 561 606 -5 1860 236 97 32 chr4 42025623 42026182 -142262480 - MER21B LTR ERV1 -256 607 13 255 179 90 26 chr4 42026480 42026558 -142262104 + MLT1K LTR MaLR 330 412 -176 303 152 18 161 chr4 42026573 42026638 -142262024 + MER5C DNA MER1_type 58 102 -222 2350 62 3 53 chr4 42026638 42026961 -142261701 + AluY SINE Alu 1 307 -4 303 152 18 161 chr4 42026961 42027007 -142261655 + MER5C DNA MER1_type 102 153 -171 23 0 0 0 chr4 42027007 42027030 -142261632 + AT_rich Low_complexity Low_complexity 1 23 0 588 229 239 5 chr4 42027355 42027560 -142261102 - MIR SINE MIR 0 262 10 276 374 113 22 chr4 42027642 42027864 -142260798 + L2 LINE L2 2985 3226 -46 738 256 62 20 chr4 42027923 42028118 -142260544 - MIR SINE MIR -26 236 34 255 343 10 10 chr4 42028248 42028350 -142260312 + L2 LINE L2 3163 3264 -8 804 230 43 0 chr4 42028408 42028595 -142260067 - MIR SINE MIR -37 225 31 953 246 72 11 chr4 42028600 42028864 -142259798 - MLT1C LTR MaLR 0 467 188 254 175 70 18 chr4 42028869 42028926 -142259736 - MLT1C LTR MaLR -243 224 165 779 180 49 33 chr4 42028963 42029146 -142259516 - MLT1C LTR MaLR -281 186 1 23 0 0 0 chr4 42030337 42030360 -142258302 + AT_rich Low_complexity Low_complexity 1 23 0 407 282 88 17 chr4 42030918 42031099 -142257563 + MIR SINE MIR 68 261 -1 390 195 189 77 chr4 42031729 42031860 -142256802 + MIR SINE MIR 46 202 -60 1724 132 4 0 chr4 42031860 42032095 -142256567 - MER46A DNA MER2_type 0 236 1 390 195 189 77 chr4 42032095 42032132 -142256530 + MIR SINE MIR 202 233 -29 486 275 53 0 chr4 42032566 42032697 -142255965 + L2 LINE L2 3134 3271 -1 317 305 136 8 chr4 42032822 42032940 -142255722 - MIR3 SINE MIR -72 136 4 1547 162 3 65 chr4 42034419 42034537 -142254125 + AluJo SINE Alu 1 125 -187 183 42 0 0 chr4 42034537 42034561 -142254101 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1547 162 3 65 chr4 42034561 42034763 -142253899 + AluJo SINE Alu 125 301 -11 2368 81 16 3 chr4 42035760 42036069 -142252593 + AluSp SINE Alu 1 313 0 193 209 23 0 chr4 42036266 42036309 -142252353 + L2 LINE L2 1784 1827 -1487 509 106 0 0 chr4 42036428 42036494 -142252168 - AluSq SINE Alu -114 199 134 449 203 70 42 chr4 42036512 42036655 -142252007 + MER5C DNA MER1_type 172 318 -6 377 307 7 21 chr4 42036838 42036893 -142251769 + GA-rich Low_complexity Low_complexity 4 58 -83 2395 96 0 0 chr4 42036893 42037194 -142251468 + AluSc SINE Alu 1 301 -8 377 307 7 21 chr4 42037194 42037278 -142251384 + GA-rich Low_complexity Low_complexity 58 141 0 25 0 0 0 chr4 42038221 42038246 -142250416 + AT_rich Low_complexity Low_complexity 1 25 0 1830 202 82 32 chr4 42038431 42038872 -142249790 + L1MC4a LINE L1 7346 7808 0 185 267 100 17 chr4 42039604 42039664 -142248998 + L2 LINE L2 2686 2750 -564 1013 97 0 8 chr4 42039664 42039798 -142248864 + AluSq/x SINE Alu 1 133 -179 1963 138 0 13 chr4 42039802 42040107 -142248555 + AluSx SINE Alu 1 301 -11 440 292 119 25 chr4 42040370 42040613 -142248049 + L2 LINE L2 3009 3274 -39 2261 132 12 0 chr4 42041539 42041872 -142246790 + MER7A DNA MER2_type 12 346 0 523 156 57 41 chr4 42042492 42042614 -142246048 + MER5C DNA MER1_type 1 124 -200 202 243 338 0 chr4 42043377 42043525 -142245137 + MER5C DNA MER1_type 127 324 0 1637 146 26 0 chr4 42045967 42046234 -142242428 - L1MB3 LINE L1 -42 6141 5868 220 329 30 108 chr4 42048397 42048628 -142240034 + L2 LINE L2 3030 3242 -30 413 235 27 107 chr4 42049633 42049820 -142238842 - MIR SINE MIR -37 225 54 635 211 79 26 chr4 42049847 42049999 -142238663 - MER20 DNA MER1_type -59 160 1 285 268 14 0 chr4 42050267 42050338 -142238324 + L2 LINE L2 3241 3312 -1 2100 131 0 3 chr4 42050813 42051110 -142237552 + AluSx SINE Alu 14 309 -3 2271 100 0 0 chr4 42052153 42052444 -142236218 - AluSx SINE Alu -19 293 3 1788 149 43 0 chr4 42053798 42054100 -142234562 - MER1B DNA MER1_type -24 315 1 358 267 37 52 chr4 42054192 42054327 -142234335 - MIR SINE MIR -56 152 20 2158 112 0 0 chr4 42054857 42055164 -142233498 + AluSx SINE Alu 1 307 0 284 47 0 23 chr4 42055341 42055384 -142233278 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 1147 87 40 0 chr4 42055497 42055647 -142233015 - L1PA11 LINE L1 -10 6164 6009 846 134 0 0 chr4 42055987 42056106 -142232556 - FRAM SINE Alu -17 159 41 925 204 11 16 chr4 42058945 42059131 -142229531 - MER5A DNA MER1_type 0 189 5 313 339 70 0 chr4 42059269 42059384 -142229278 - L2 LINE L2 -44 3228 3106 229 305 46 53 chr4 42060713 42060844 -142227818 - MIR3 SINE MIR -48 160 31 848 204 48 0 chr4 42061089 42061256 -142227406 + FAM SINE Alu 1 175 0 930 283 28 0 chr4 42061666 42061913 -142226749 - MIR SINE MIR -3 259 6 930 236 15 5 chr4 42062205 42062404 -142226258 - MER3 DNA MER1_type -8 201 1 616 237 126 0 chr4 42062592 42062782 -142225880 + MIR SINE MIR 20 233 -29 467 293 96 53 chr4 42062793 42063168 -142225494 + L2 LINE L2 2384 2774 -540 309 325 37 75 chr4 42063324 42063592 -142225070 + L2 LINE L2 2827 3084 -188 569 332 20 5 chr4 42063633 42063835 -142224827 + MIR SINE MIR 42 246 -16 35 78 0 0 chr4 42063899 42063976 -142224686 + AT_rich Low_complexity Low_complexity 1 77 0 313 259 36 45 chr4 42064077 42064189 -142224473 - LTR67 LTR ERVL -15 542 432 180 290 48 16 chr4 42064420 42064461 -142224201 + L2 LINE L2 2926 2971 -301 1473 164 70 0 chr4 42064461 42064717 -142223945 - AluJo SINE Alu -38 274 1 180 290 48 16 chr4 42064717 42064737 -142223925 + L2 LINE L2 2971 2989 -283 195 219 0 0 chr4 42064834 42064875 -142223787 + L2 LINE L2 3272 3312 -1 485 234 53 128 chr4 42064903 42064939 -142223723 - MIR SINE MIR -38 224 187 1989 137 0 3 chr4 42064939 42065246 -142223416 + AluSx SINE Alu 3 308 0 485 234 53 128 chr4 42065246 42065435 -142223227 - MIR SINE MIR -75 187 15 180 0 0 0 chr4 42066540 42066560 -142222102 + (A)n Simple_repeat Simple_repeat 1 20 0 214 140 40 0 chr4 42067350 42067400 -142221262 + (TA)n Simple_repeat Simple_repeat 2 53 0 26 30 0 0 chr4 42067461 42067494 -142221168 + AT_rich Low_complexity Low_complexity 1 33 0 388 306 37 25 chr4 42067725 42067967 -142220695 - L1M4 LINE L1 -1312 4834 4590 1922 189 96 32 chr4 42068172 42068611 -142220051 + MLT1C LTR MaLR 1 467 0 2169 113 0 0 chr4 42068663 42068954 -142219708 - AluSq SINE Alu -22 291 1 1252 104 14 77 chr4 42069310 42069486 -142219176 + L1MB3 LINE L1 5976 6137 -46 2383 72 0 13 chr4 42069486 42069791 -142218871 + AluY SINE Alu 1 301 -10 1252 104 14 77 chr4 42069791 42069835 -142218827 + L1MB3 LINE L1 6137 6182 -1 736 102 0 0 chr4 42070092 42070190 -142218472 - AluSg/x SINE Alu -5 307 210 684 164 26 0 chr4 42070291 42070407 -142218255 + L2 LINE L2 1833 1951 -1363 192 348 14 0 chr4 42070463 42070532 -142218130 + L2 LINE L2 2181 2250 -1064 269 132 0 0 chr4 42070532 42070570 -142218092 + tRNA-Gly-GGA tRNA tRNA 1 38 -37 1458 237 104 43 chr4 42070571 42070660 -142218002 + L2 LINE L2 2240 2322 -992 2451 122 16 21 chr4 42070660 42071037 -142217625 - THE1C LTR MaLR 0 375 1 1458 237 104 43 chr4 42071037 42071437 -142217225 + L2 LINE L2 2322 2759 -555 2723 135 48 33 chr4 42071437 42071840 -142216822 + MLT1C LTR MaLR 1 413 -54 3722 123 9 26 chr4 42071840 42072376 -142216286 - MER1A DNA MER1_type 0 527 1 2723 135 48 33 chr4 42072376 42072432 -142216230 + MLT1C LTR MaLR 413 467 0 378 212 284 14 chr4 42072476 42072698 -142215964 + L2 LINE L2 2862 3143 -170 550 263 121 31 chr4 42072717 42073089 -142215573 + LTR16A LTR ERVL 1 450 0 352 202 124 22 chr4 42073090 42073179 -142215483 + L2 LINE L2 3176 3273 -40 345 177 0 0 chr4 42074762 42074824 -142213838 - Tigger5 DNA MER2_type -26 2297 2236 197 107 0 0 chr4 42074871 42074899 -142213763 - MIR SINE MIR -82 180 153 271 336 26 17 chr4 42075625 42075741 -142212921 + MIR SINE MIR 84 200 -62 186 133 0 0 chr4 42075951 42075981 -142212681 + (TATG)n Simple_repeat Simple_repeat 3 32 0 1806 159 84 18 chr4 42076431 42076765 -142211897 + MLT1A1 LTR MaLR 10 365 0 913 157 18 18 chr4 42076843 42077009 -142211653 + AluJb SINE Alu 132 297 -15 1655 250 120 5 chr4 42077019 42077571 -142211091 + L1ME3 LINE L1 5529 6143 -19 2179 104 7 7 chr4 42078322 42078630 -142210032 - AluSg SINE Alu -2 308 1 4524 183 36 30 chr4 42079552 42080982 -142207680 + L1MA9 LINE L1 4843 6278 -34 574 260 69 12 chr4 42081370 42081543 -142207119 - MIR SINE MIR -22 240 58 222 37 0 0 chr4 42081825 42081852 -142206810 + (GA)n Simple_repeat Simple_repeat 2 28 0 1668 145 6 93 chr4 42082092 42082416 -142206246 + AluJo SINE Alu 1 296 -16 1491 158 75 4 chr4 42082481 42082769 -142205893 + AluJo SINE Alu 1 307 0 21 36 0 0 chr4 42082926 42082954 -142205708 + AT_rich Low_complexity Low_complexity 1 28 0 1705 274 143 35 chr4 42083014 42083959 -142204703 + L2 LINE L2 1952 3109 -204 2435 61 3 0 chr4 42083959 42084252 -142204410 + AluY SINE Alu 1 294 -17 1705 274 143 35 chr4 42084252 42084482 -142204180 + L2 LINE L2 3109 3313 0 207 0 0 0 chr4 42084680 42084703 -142203959 + (T)n Simple_repeat Simple_repeat 1 23 0 2266 99 10 0 chr4 42085687 42085989 -142202673 + AluSx SINE Alu 1 305 -7 186 43 0 0 chr4 42085990 42086013 -142202649 + (CA)n Simple_repeat Simple_repeat 2 24 0 516 272 89 0 chr4 42086323 42086481 -142202181 - MIR SINE MIR -2 260 89 327 177 0 0 chr4 42086766 42086828 -142201834 + (TCTG)n Simple_repeat Simple_repeat 3 64 0 2041 130 3 7 chr4 42087500 42087799 -142200863 - AluJo SINE Alu -12 300 3 26 50 0 0 chr4 42088158 42088198 -142200464 + AT_rich Low_complexity Low_complexity 1 40 0 2557 61 0 10 chr4 42088198 42088510 -142200152 - AluY SINE Alu -2 309 1 310 301 57 20 chr4 42089099 42089300 -142199362 + MIR SINE MIR 48 205 -3 833 135 8 8 chr4 42089319 42089445 -142199217 + FLAM_C SINE Alu 1 126 -7 840 215 47 70 chr4 42089450 42089748 -142198914 + L1ME1 LINE L1 5874 6164 -2 255 229 29 0 chr4 42089754 42089824 -142198838 + MIR SINE MIR 179 250 -12 2020 140 0 10 chr4 42090124 42090444 -142198218 - AluJb SINE Alu 0 312 1 1738 213 147 15 chr4 42090489 42091033 -142197629 - L2 LINE L2 -767 2547 1932 2372 147 21 2 chr4 42091073 42091495 -142197167 + L1M4 LINE L1 5322 5751 -427 1196 202 19 4 chr4 42091486 42091748 -142196914 + L1M4 LINE L1 1041 1306 -5236 * 1876 195 47 31 chr4 42091791 42092109 -142196553 - MER101 LTR ERV1 -32 442 114 3319 201 19 43 chr4 42092109 42092176 -142196486 - MER72 LTR ERV1 0 722 655 2405 85 0 16 chr4 42092176 42092493 -142196169 + AluSx SINE Alu 1 312 0 3319 201 19 43 chr4 42092493 42093165 -142195497 - MER72 LTR ERV1 -67 655 1 1876 195 47 31 chr4 42093165 42093271 -142195391 - MER101 LTR ERV1 -360 114 11 247 75 0 25 chr4 42093271 42093311 -142195351 + L1M4 LINE L1 1305 1343 -5303 * 252 187 27 53 chr4 42093307 42093382 -142195280 - L1M4 LINE L1 -5512 1030 958 1754 195 3 3 chr4 42093411 42093719 -142194943 - L1M4 LINE L1 -5690 852 545 327 209 15 0 chr4 42093801 42093868 -142194794 - L1M4 LINE L1 -6474 68 1 1199 289 87 29 chr4 42093869 42094381 -142194281 - L1MDa LINE L1 -2523 4017 3536 1617 204 0 10 chr4 42094381 42094689 -142193973 - AluJo SINE Alu -7 305 1 1199 289 87 29 chr4 42094689 42095098 -142193564 - L1MDa LINE L1 -3004 3536 3011 22 0 0 0 chr4 42095099 42095121 -142193541 + AT_rich Low_complexity Low_complexity 1 22 0 6414 17 6 0 chr4 42095121 42095813 -142192849 - L1PA2 LINE L1 0 6155 5460 2424 223 59 19 chr4 42095832 42096411 -142192251 - MER76 LTR ERV -10 678 77 491 300 53 11 chr4 42096411 42096674 -142191988 - L1MDa LINE L1 -3653 2887 2614 993 190 35 10 chr4 42096676 42096876 -142191786 + AluJo SINE Alu 84 288 -24 2468 72 0 0 chr4 42097302 42097614 -142191048 - AluY SINE Alu 0 312 1 25 31 0 0 chr4 42097622 42097654 -142191008 + AT_rich Low_complexity Low_complexity 1 32 0 1087 179 6 0 chr4 42097686 42097854 -142190808 - FAM SINE Alu -3 172 4 433 299 85 22 chr4 42097907 42098131 -142190531 - L1MDa LINE L1 -4534 2006 1769 25 31 0 0 chr4 42098182 42098214 -142190448 + AT_rich Low_complexity Low_complexity 1 32 0 1952 167 0 0 chr4 42098445 42098739 -142189923 + AluSx SINE Alu 1 294 -18 2280 82 0 17 chr4 42098875 42099166 -142189496 - AluSc SINE Alu -23 286 1 994 112 14 7 chr4 42099166 42099309 -142189353 - AluSq/x SINE Alu -168 145 2 816 176 0 8 chr4 42099309 42099440 -142189222 - FLAM_A SINE Alu -3 130 1 270 189 19 0 chr4 42099928 42099981 -142188681 + L2 LINE L2 3254 3307 -6 476 299 40 19 chr4 42100481 42100668 -142187994 + MIR SINE MIR 3 192 -62 2229 105 0 23 chr4 42100761 42101067 -142187595 + AluY SINE Alu 1 299 -12 2233 111 3 0 chr4 42101281 42101578 -142187084 - AluSx SINE Alu -14 298 1 329 225 105 20 chr4 42101767 42101919 -142186743 - LTR67 LTR ERVL -2 523 384 2118 123 3 25 chr4 42102597 42102915 -142185747 - AluSx SINE Alu -1 311 1 1730 176 0 10 chr4 42103015 42103305 -142185357 - AluJo SINE Alu -25 287 1 486 280 182 19 chr4 42103862 42104076 -142184586 + MIR SINE MIR 5 253 -9 262 252 56 37 chr4 42104090 42104197 -142184465 + L1M4 LINE L1 17 125 -6417 317 303 46 13 chr4 42104578 42104730 -142183932 + L1M4 LINE L1 719 875 -5667 888 165 62 88 chr4 42104855 42105115 -142183547 + L1ME1 LINE L1 4220 4472 -1674 1258 180 36 60 chr4 42105218 42105290 -142183372 - MER69 DNA AcHobo -359 2167 2095 2252 159 37 0 chr4 42105290 42105642 -142183020 - MLT1A1 LTR MaLR 0 365 1 1258 180 36 60 chr4 42105642 42105903 -142182759 - MER69 DNA AcHobo -431 2095 1842 * 1768 254 80 19 chr4 42105901 42106003 -142182659 - MER69 DNA AcHobo -1772 754 660 2899 121 41 2 chr4 42106003 42106415 -142182247 - MSTA LTR MaLR 0 428 1 1768 254 80 19 chr4 42106415 42106840 -142181822 - MER69 DNA AcHobo -1866 660 195 1039 183 15 60 chr4 42106943 42107138 -142181524 - MER69 DNA AcHobo -122 2404 2223 2100 109 30 13 chr4 42107138 42107441 -142181221 - AluSg SINE Alu -2 308 1 1039 183 15 60 chr4 42107441 42107513 -142181149 - MER69 DNA AcHobo -303 2223 2149 309 51 0 0 chr4 42107643 42107682 -142180980 + (T)n Simple_repeat Simple_repeat 1 39 0 779 197 5 116 chr4 42107774 42107862 -142180800 - MER97b DNA MER1_type? -486 567 511 1722 159 16 29 chr4 42107862 42108171 -142180491 + AluJo SINE Alu 1 305 -7 779 197 5 116 chr4 42108171 42108280 -142180382 - MER97b DNA MER1_type? -542 511 392 338 114 0 0 chr4 42108380 42108424 -142180238 - Alu SINE Alu -257 44 1 2254 215 46 10 chr4 42108721 42109243 -142179419 + L1ME1 LINE L1 5621 6161 -5 890 198 59 102 chr4 42109246 42109569 -142179093 + MER52A LTR ERV1 662 970 -785 * 1176 229 205 64 chr4 42109563 42110139 -142178523 + MER52A LTR ERV1 1099 1755 0 2179 195 53 8 chr4 42110720 42111232 -142177430 + L1ME1 LINE L1 4651 5185 -961 231 220 17 0 chr4 42111283 42111342 -142177320 - AluJ/FLAM SINE Alu -201 101 42 293 170 0 0 chr4 42111344 42111397 -142177265 + FLAM_A SINE Alu 81 133 0 4093 208 26 15 chr4 42111426 42112375 -142176287 + L1ME1 LINE L1 5204 6160 -6 2203 96 24 0 chr4 42112670 42112961 -142175701 + AluSx SINE Alu 1 298 -14 201 281 256 37 chr4 42113030 42113112 -142175550 - MIR SINE MIR -69 139 40 1601 110 144 19 chr4 42113240 42113504 -142175158 + AluSx SINE Alu 1 297 -15 434 280 91 14 chr4 42113743 42113886 -142174776 + MLT1L LTR MaLR 327 480 -135 332 68 0 0 chr4 42113889 42113933 -142174729 + MER65A LTR ERV1 1 44 -401 2450 84 7 0 chr4 42113937 42114247 -142174415 + AluSp SINE Alu 1 312 -1 803 215 6 0 chr4 42114249 42114412 -142174250 + AluJo/FRAM SINE Alu 129 292 -20 2315 93 6 3 chr4 42114415 42114726 -142173936 + AluSq SINE Alu 1 312 -1 2696 133 7 5 chr4 42114735 42115140 -142173522 + MER65A LTR ERV1 40 445 0 233 273 34 0 chr4 42115146 42115234 -142173428 + MLT1L LTR MaLR 492 582 -33 2601 119 3 0 chr4 42115257 42115593 -142173069 - MER1B DNA MER1_type 0 337 1 757 228 133 9 chr4 42115595 42115828 -142172834 + MIR SINE MIR 1 262 0 191 288 139 78 chr4 42115878 42116173 -142172489 - L3 LINE CR1 -174 1403 1091 207 256 0 0 chr4 42116183 42116226 -142172436 - L2 LINE L2 -5 3308 3266 416 250 20 20 chr4 42116302 42116402 -142172260 - MER117 DNA MER1_type -1 196 97 1183 109 18 0 chr4 42116551 42116716 -142171946 + AluSc SINE Alu 141 308 -1 852 100 0 0 chr4 42116723 42116833 -142171829 - AluSq/x SINE Alu -202 110 1 21 0 0 0 chr4 42116996 42117017 -142171645 + AT_rich Low_complexity Low_complexity 1 21 0 758 149 4 14 chr4 42117078 42117336 -142171326 + AluJo SINE Alu 1 306 -6 462 300 93 36 chr4 42117366 42117912 -142170750 - L1ME4a LINE L1 -83 6038 5400 1733 175 3 7 chr4 42117914 42118217 -142170445 - AluJo SINE Alu -9 303 2 2115 120 3 0 chr4 42118589 42118880 -142169782 - AluSx SINE Alu -20 292 1 180 0 0 0 chr4 42119116 42119136 -142169526 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 273 327 35 18 chr4 42119666 42119779 -142168883 + MIR SINE MIR 68 182 -80 2120 128 42 31 chr4 42119802 42120162 -142168500 - THE1B LTR MaLR 0 364 1 685 227 58 112 chr4 42120512 42120790 -142167872 - Charlie8 DNA MER1_type -2128 289 27 2211 208 68 30 chr4 42121818 42121839 -142166823 + L1MB7 LINE L1 5585 5604 -580 2203 97 14 3 chr4 42121839 42122127 -142166535 + AluSx SINE Alu 1 291 -21 2211 208 68 30 chr4 42122127 42122660 -142166002 + L1MB7 LINE L1 5604 6164 -20 2443 88 0 0 chr4 42122660 42122955 -142165707 - AluSq SINE Alu -18 295 1 2211 208 68 30 chr4 42122955 42122975 -142165687 + L1MB7 LINE L1 6164 6182 -2 21 0 0 0 chr4 42123719 42123740 -142164922 + AT_rich Low_complexity Low_complexity 1 21 0 342 45 0 0 chr4 42124249 42124293 -142164369 + (GA)n Simple_repeat Simple_repeat 2 45 0 486 159 34 0 chr4 42124526 42124614 -142164048 + MER53 DNA DNA 1 91 -98 256 293 60 10 chr4 42124682 42124793 -142163869 + MIR SINE MIR 45 160 -61 605 254 97 6 chr4 42124872 42125037 -142163625 - MLT1J LTR MaLR -331 180 1 1226 130 6 0 chr4 42125338 42125515 -142163147 - AluY SINE Alu -1 310 133 239 314 23 0 chr4 42125759 42125845 -142162817 - L3 LINE CR1 -1169 408 321 186 133 0 0 chr4 42125943 42125973 -142162689 + (TTC)n Simple_repeat Simple_repeat 2 31 0 359 333 114 38 chr4 42126181 42126324 -142162338 + L2 LINE L2 2989 3120 -152 2579 42 3 6 chr4 42126324 42126636 -142162026 + AluY SINE Alu 1 311 0 359 333 114 38 chr4 42126636 42126756 -142161906 + L2 LINE L2 3120 3272 0 278 189 0 0 chr4 42126851 42126904 -142161758 - L1MB8 LINE L1 0 6178 6126 336 301 92 12 chr4 42127011 42127184 -142161478 + MIR SINE MIR 21 207 -55 25 0 0 0 chr4 42131115 42131140 -142157522 + AT_rich Low_complexity Low_complexity 1 25 0 531 176 0 0 chr4 42131147 42131232 -142157430 - FLAM_A SINE Alu -57 85 1 1537 166 96 0 chr4 42133583 42133854 -142154808 + AluJb SINE Alu 1 297 -15 1500 150 92 8 chr4 42134071 42134311 -142154351 - AluSx SINE Alu -52 260 1 26 30 0 0 chr4 42134443 42134476 -142154186 + AT_rich Low_complexity Low_complexity 1 33 0 1782 162 15 0 chr4 42134476 42134748 -142153914 - AluJo SINE Alu -23 289 14 203 297 69 20 chr4 42134811 42134912 -142153750 + MIR SINE MIR 8 113 -149 1306 172 56 8 chr4 42134980 42135230 -142153432 - MER61A LTR ERV1 -81 262 1 186 350 112 0 chr4 42135413 42135556 -142153106 + L2 LINE L2 2471 2629 -685 21 0 0 0 chr4 42135562 42135583 -142153079 + AT_rich Low_complexity Low_complexity 1 21 0 4495 137 12 59 chr4 42135583 42135939 -142152723 - L1MB3 LINE L1 -1 6182 5811 2224 107 3 0 chr4 42135939 42136274 -142152388 - AluSg SINE Alu 0 310 1 4495 137 12 59 chr4 42136274 42136759 -142151903 - L1MB3 LINE L1 -372 5811 5381 398 202 96 0 chr4 42136764 42136868 -142151794 + L1 LINE L1 5185 5298 -848 2469 86 0 13 chr4 42136904 42137219 -142151443 - AluY SINE Alu 0 311 1 734 181 7 0 chr4 42137283 42137432 -142151230 + GA-rich Low_complexity Low_complexity 3 152 0 534 235 22 7 chr4 42137560 42137696 -142150966 - MER5B DNA MER1_type -1 177 40 358 167 127 28 chr4 42137699 42137822 -142150840 + L1MB5 LINE L1 6039 6180 0 241 323 0 24 chr4 42137891 42138015 -142150647 - MER5A DNA MER1_type -25 164 44 2137 104 35 0 chr4 42138015 42138302 -142150360 - AluSg SINE Alu -13 297 1 1173 140 0 0 chr4 42138436 42138600 -142150062 - AluSg/x SINE Alu -12 300 137 2054 91 24 170 chr4 42139013 42139431 -142149231 + LTR18A LTR ERVL 1 357 0 7874 108 35 16 chr4 42140215 42140617 -142148045 + Tigger3b DNA MER2_type 1 394 -2634 2638 52 0 3 chr4 42140617 42140924 -142147738 + AluY SINE Alu 1 306 -5 7874 108 35 16 chr4 42140924 42141729 -142146933 + Tigger3b DNA MER2_type 394 1231 0 229 375 62 7 chr4 42141755 42141899 -142146763 + L2 LINE L2 3121 3272 0 216 0 0 0 chr4 42142534 42142558 -142146104 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5541 158 38 35 chr4 42143437 42144470 -142144192 - L1PA16 LINE L1 -8 6158 5118 1770 161 21 3 chr4 42144470 42144756 -142143906 - AluSx SINE Alu -21 291 1 5541 158 38 35 chr4 42144756 42145659 -142143003 - L1PA16 LINE L1 -1048 5118 4219 673 129 69 9 chr4 42145659 42145775 -142142887 + AluJb SINE Alu 171 293 -19 2883 172 19 2 chr4 42145775 42146293 -142142369 - L1 LINE L1 -1924 4222 3696 731 91 0 0 chr4 42146293 42146392 -142142270 - AluY SINE Alu -9 302 204 270 0 0 0 chr4 42146911 42146941 -142141721 + (TTA)n Simple_repeat Simple_repeat 1 30 0 787 41 10 0 chr4 42146942 42147039 -142141623 - HY3 scRNA scRNA -3 98 1 500 188 278 0 chr4 42147187 42147331 -142141331 + MER5A DNA MER1_type 1 184 -5 453 283 133 47 chr4 42148666 42149099 -142139563 - MLT1H LTR MaLR 0 549 22 1341 209 89 17 chr4 42149282 42149641 -142139021 + LTR16A1 LTR ERVL 1 385 -72 1835 155 13 35 chr4 42149759 42150076 -142138586 - AluSx SINE Alu -2 310 1 2364 148 45 26 chr4 42150440 42150740 -142137922 - MSTB LTR MaLR 0 426 114 2006 145 59 17 chr4 42150740 42151098 -142137564 - THE1C LTR MaLR -2 373 1 2364 148 45 26 chr4 42151098 42151215 -142137447 - MSTB LTR MaLR -312 114 1 945 264 74 82 chr4 42151248 42151760 -142136902 + MLT1K LTR MaLR 67 574 -14 23 0 0 0 chr4 42152162 42152185 -142136477 + AT_rich Low_complexity Low_complexity 1 23 0 306 283 35 96 chr4 42152338 42152465 -142136197 - MIR SINE MIR -57 205 93 1810 125 0 0 chr4 42152465 42152713 -142135949 + AluSx SINE Alu 40 287 -25 306 283 35 96 chr4 42152713 42152783 -142135879 - MIR SINE MIR -169 93 20 616 267 44 19 chr4 42152916 42153122 -142135540 - L2 LINE L2 0 3313 3103 846 83 0 0 chr4 42153126 42153233 -142135429 + MSTB LTR MaLR 1 107 -319 3024 146 7 11 chr4 42153233 42153692 -142134970 - LTR32 LTR ERVL 0 471 15 1564 164 53 50 chr4 42153692 42154015 -142134647 + MSTB LTR MaLR 103 426 0 458 252 7 59 chr4 42154015 42154150 -142134512 - L2 LINE L2 -226 3087 2960 468 121 0 0 chr4 42154170 42154236 -142134426 - THE1B LTR MaLR 0 364 299 610 41 0 0 chr4 42154336 42154409 -142134253 - THE1C LTR MaLR -302 73 1 1260 134 22 60 chr4 42154612 42154704 -142133958 + L1MD3 LINE L1 7727 7821 -174 2385 157 74 0 chr4 42154704 42155125 -142133537 + LTR47A LTR ERVL 1 452 0 1260 134 22 60 chr4 42155125 42155301 -142133361 + L1MD3 LINE L1 7821 7985 -10 1614 143 0 40 chr4 42155310 42155561 -142133101 + AluJo SINE Alu 1 241 -71 662 233 82 48 chr4 42155572 42155977 -142132685 + LTR1B LTR ERV1 39 1216 -333 314 121 30 45 chr4 42156180 42156246 -142132416 + AluJo SINE Alu 238 302 0 9969 104 3 0 chr4 42156311 42157712 -142130950 + L1P LINE L1 3952 5356 -790 363 194 129 0 chr4 42157812 42157905 -142130757 - L1ME3 LINE L1 -33 6129 6025 400 281 54 9 chr4 42157950 42158171 -142130491 + HAL1 LINE L1 1002 1232 -1275 1091 96 75 64 chr4 42158179 42158366 -142130296 - AluJo SINE Alu -38 274 86 1962 139 0 0 chr4 42158393 42158667 -142129995 - AluSx SINE Alu -38 274 1 586 267 104 10 chr4 42158686 42158888 -142129774 - L1MEd LINE L1 -5359 760 540 1531 167 4 19 chr4 42159042 42159306 -142129356 + AluJb SINE Alu 38 297 -15 743 170 0 13 chr4 42159385 42159702 -142128960 + (TG)n Simple_repeat Simple_repeat 1 312 0 549 277 67 32 chr4 42159707 42159992 -142128670 - L1MEd LINE L1 -5799 320 26 192 302 0 19 chr4 42160157 42160210 -142128452 - L2 LINE L2 -254 3059 3008 23 54 0 0 chr4 42160348 42160385 -142128277 + AT_rich Low_complexity Low_complexity 1 37 0 1008 273 96 13 chr4 42160530 42160926 -142127736 + LTR16B LTR ERVL 1 429 -35 2269 121 3 0 chr4 42160936 42161243 -142127419 - AluSx SINE Alu 0 312 5 1775 167 0 46 chr4 42161257 42161581 -142127081 - AluJo SINE Alu -3 309 1 231 219 0 0 chr4 42161587 42161628 -142127034 + LTR16B LTR ERVL 424 464 0 2729 172 20 7 chr4 42161658 42162436 -142126226 + L1MB8 LINE L1 4980 5766 -412 40407 73 6 7 chr4 42162447 42168617 -142120045 + L1PA6 LINE L1 11 6172 0 1389 115 50 0 chr4 42168727 42168945 -142119717 + L1MB8 LINE L1 5756 5984 -200 820 123 0 8 chr4 42168958 42169088 -142119574 + L1MB8 LINE L1 6045 6173 -5 216 0 0 0 chr4 42169093 42169117 -142119545 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2021 129 30 10 chr4 42169219 42169345 -142119317 + AluSx SINE Alu 1 123 -189 315 0 0 0 chr4 42169345 42169380 -142119282 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2021 129 30 10 chr4 42169380 42169555 -142119107 + AluSx SINE Alu 123 308 -4 243 230 160 0 chr4 42169587 42169687 -142118975 + L1ME4a LINE L1 6004 6119 -2 3188 100 29 23 chr4 42169729 42170075 -142118587 + L1MA3 LINE L1 5791 6142 -163 2259 112 0 0 chr4 42170075 42170378 -142118284 + AluSg SINE Alu 1 303 -7 3188 100 29 23 chr4 42170378 42170543 -142118119 + L1MA3 LINE L1 6142 6305 0 657 228 40 7 chr4 42172740 42172889 -142115773 - MER58B DNA MER1_type 0 341 188 426 238 139 45 chr4 42172942 42173098 -142115564 - MIR SINE MIR -38 224 43 2005 147 3 3 chr4 42173098 42173398 -142115264 + AluSx SINE Alu 1 300 -12 426 238 139 45 chr4 42173398 42173443 -142115219 - MIR SINE MIR -219 43 4 777 124 51 66 chr4 42173886 42174023 -142114639 - AluJo SINE Alu -177 135 1 189 0 0 0 chr4 42174028 42174049 -142114613 + (T)n Simple_repeat Simple_repeat 1 21 0 1543 173 66 0 chr4 42174433 42174704 -142113958 - AluJo SINE Alu -23 289 1 195 69 0 0 chr4 42175031 42175060 -142113602 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2240 74 0 11 chr4 42175062 42175347 -142113315 - AluY SINE Alu -29 282 1 231 186 0 144 chr4 42176449 42176546 -142112116 - L1MC3 LINE L1 -21 7764 7682 1185 100 6 0 chr4 42176546 42176706 -142111956 - MLT2A2 LTR ERVL 0 453 293 1957 113 37 10 chr4 42176754 42177054 -142111608 - MLT2A2 LTR ERVL -145 308 1 3181 176 112 22 chr4 42177063 42177795 -142110867 - L1MC3 LINE L1 -153 7632 6835 45263 36 2 1 chr4 42178223 42184356 -142104306 - L1PA4 LINE L1 0 6155 15 1762 161 7 3 chr4 42184362 42184653 -142104009 - AluJb SINE Alu -20 292 1 2147 113 3 44 chr4 42184663 42184982 -142103680 - AluSx SINE Alu -6 306 1 2305 117 20 8 chr4 42185486 42185837 -142102825 - THE1A LTR MaLR 0 355 1 2261 110 0 0 chr4 42186311 42186610 -142102052 - AluSq SINE Alu -14 299 1 495 257 176 11 chr4 42186788 42186975 -142101687 - MIR SINE MIR -19 243 26 292 256 239 0 chr4 42186999 42187116 -142101546 + MER69 DNA AcHobo 1 145 -2381 23 33 0 0 chr4 42187212 42187242 -142101420 + AT_rich Low_complexity Low_complexity 1 30 0 2754 92 0 11 chr4 42187390 42187758 -142100904 - THE1B LTR MaLR 0 364 1 578 194 21 56 chr4 42187777 42187921 -142100741 - FRAM SINE Alu -5 171 33 467 288 87 0 chr4 42187933 42188117 -142100545 + MIR SINE MIR 42 241 -21 2290 61 55 0 chr4 42188306 42188599 -142100063 - AluY SINE Alu -1 310 2 2110 146 0 3 chr4 42189596 42189905 -142098757 - AluSx SINE Alu -4 308 1 1949 148 3 3 chr4 42190754 42191045 -142097617 + AluJo SINE Alu 1 291 -21 631 204 9 0 chr4 42191123 42191236 -142097426 + Charlie1 DNA MER1_type 7 120 -2641 * 887 162 114 57 chr4 42191235 42191392 -142097270 + Charlie1 DNA MER1_type 2423 2570 -191 1814 168 3 10 chr4 42191392 42191689 -142096973 - AluJb SINE Alu -17 295 1 887 162 114 57 chr4 42191689 42191846 -142096816 + Charlie1 DNA MER1_type 2570 2755 -6 2402 107 3 0 chr4 42191901 42192209 -142096453 - AluSq SINE Alu -4 309 1 22 70 0 0 chr4 42192366 42192409 -142096253 + AT_rich Low_complexity Low_complexity 1 43 0 312 247 10 21 chr4 42192441 42192537 -142096125 - MLT1A1 LTR MaLR -103 287 180 1298 240 123 20 chr4 42193094 42193757 -142094905 - MER20B DNA MER1_type -3 780 2 1370 207 22 20 chr4 42193789 42194329 -142094333 + MLT1E3 LTR MaLR 1 624 0 772 191 0 0 chr4 42194342 42194473 -142094189 - FLAM_C SINE Alu -2 131 1 1230 106 0 0 chr4 42195154 42195314 -142093348 + AluSg/x SINE Alu 136 295 -17 1305 254 76 27 chr4 42195784 42196229 -142092433 - MLT1C LTR MaLR 0 467 1 2206 139 129 5 chr4 42197639 42198020 -142090642 + MSTA LTR MaLR 1 428 0 353 276 31 20 chr4 42198164 42198262 -142090400 - MLT1K LTR MaLR -346 242 144 1717 166 9 52 chr4 42198437 42198763 -142089899 - AluJo SINE Alu 0 312 1 1744 166 28 0 chr4 42198803 42199086 -142089576 - AluJo SINE Alu -21 291 1 2022 118 0 17 chr4 42200005 42200331 -142088331 + AluSx SINE Alu 1 321 0 1364 153 13 13 chr4 42200337 42200565 -142088097 + AluJo SINE Alu 5 232 -80 380 140 0 0 chr4 42200812 42200869 -142087793 + AluJo SINE Alu 235 291 -11 405 289 74 7 chr4 42202183 42202318 -142086344 - MER5B DNA MER1_type 0 178 35 2326 147 29 154 chr4 42202640 42203340 -142085322 + LTR9 LTR ERV1 1 612 0 1562 204 7 20 chr4 42203434 42203738 -142084924 + AluSx SINE Alu 1 300 -12 31 0 0 0 chr4 42203738 42203769 -142084893 + AT_rich Low_complexity Low_complexity 1 31 0 3037 158 72 2 chr4 42203849 42204442 -142084220 - L1MB7 LINE L1 -9 6175 5541 2349 122 51 46 chr4 42204949 42205368 -142083294 + LTR23 LTR ERV1 1 424 -13 2220 173 110 115 chr4 42205368 42206097 -142082565 + LTR8A LTR ERV1 1 725 -2 2349 122 51 46 chr4 42206097 42206112 -142082550 + LTR23 LTR ERV1 424 437 0 2367 100 0 0 chr4 42206307 42206607 -142082055 - AluSg SINE Alu -10 300 1 2223 197 76 15 chr4 42206630 42207102 -142081560 - LTR31 LTR ERV1 -15 604 104 744 292 6 38 chr4 42207349 42207685 -142080977 + L1ME LINE L1 5483 5810 -352 185 267 22 0 chr4 42207695 42207740 -142080922 + MER5A DNA MER1_type 12 57 -132 332 164 134 0 chr4 42207931 42207998 -142080664 + LTR43 LTR ERV1 1 76 -526 1917 135 58 15 chr4 42208016 42208342 -142080320 + LTR43 LTR ERV1 25 364 -238 2132 135 143 11 chr4 42208342 42208720 -142079942 + MSTA LTR MaLR 1 428 0 3958 119 11 63 chr4 42208722 42209387 -142079275 + MSTA-int LTR MaLR 3 632 -948 673 155 0 17 chr4 42209387 42209503 -142079159 + MLT1I LTR MaLR 296 409 0 1585 195 7 17 chr4 42210052 42210349 -142078313 - AluJo SINE Alu -18 294 1 1146 272 72 17 chr4 42211184 42211643 -142077019 - L2 LINE L2 -1 3312 2829 203 147 0 0 chr4 42211640 42211674 -142076988 + L2 LINE L2 3280 3313 0 * 205 331 57 32 chr4 42212375 42212499 -142076163 + MER5A DNA MER1_type 63 189 0 1622 198 47 48 chr4 42212881 42213361 -142075301 + MLT1F LTR MaLR 1 559 -8 959 214 90 53 chr4 42213446 42213768 -142074894 - L1ME3A LINE L1 -1 6169 5836 941 279 107 7 chr4 42213793 42213875 -142074787 - L1ME3A LINE L1 -852 5294 5222 1962 114 26 65 chr4 42213875 42214182 -142074480 - AluSx SINE Alu -17 295 1 941 279 107 7 chr4 42214182 42214537 -142074125 - L1ME3A LINE L1 -924 5222 4813 2398 171 42 133 chr4 42214551 42215315 -142073347 + LTR8A LTR ERV1 34 727 0 2384 76 0 13 chr4 42215328 42215632 -142073030 - AluY SINE Alu -11 300 1 256 268 0 0 chr4 42215645 42215716 -142072946 - L1ME3A LINE L1 -1592 4554 4484 962 75 0 45 chr4 42215721 42215855 -142072807 - L1PA8A LINE L1 -13 6118 5991 328 83 0 42 chr4 42215955 42216003 -142072659 - THE1C LTR MaLR -329 46 1 474 244 218 5 chr4 42216383 42216580 -142072082 + MIR SINE MIR 14 252 -10 211 320 110 35 chr4 42216964 42217164 -142071498 + L2 LINE L2 2845 3059 -254 265 220 70 20 chr4 42217181 42217281 -142071381 - LTR33 LTR ERVL -24 497 393 374 262 16 84 chr4 42217533 42217646 -142071016 + L2 LINE L2 3132 3228 -85 307 54 0 36 chr4 42217646 42217702 -142070960 + (TG)n Simple_repeat Simple_repeat 2 55 0 374 262 16 84 chr4 42217702 42217779 -142070883 + L2 LINE L2 3228 3309 -4 230 173 0 19 chr4 42218362 42218414 -142070248 + G-rich Low_complexity Low_complexity 1 51 0 549 205 31 16 chr4 42220276 42220403 -142068259 - L1ME3 LINE L1 -7 6155 6027 415 308 0 8 chr4 42221607 42221727 -142066935 + MIR SINE MIR 3 121 -141 568 209 8 30 chr4 42221798 42221932 -142066730 + MIR SINE MIR 130 260 -2 279 264 0 0 chr4 42221933 42222024 -142066638 + (TTA)n Simple_repeat Simple_repeat 2 92 0 217 244 0 0 chr4 42222506 42222551 -142066111 + CT-rich Low_complexity Low_complexity 4 48 0 208 217 0 0 chr4 42223798 42223844 -142064818 + (ATG)n Simple_repeat Simple_repeat 3 48 0 1979 151 51 43 chr4 42224481 42224853 -142063809 - THE1C LTR MaLR 0 375 1 2115 99 0 81 chr4 42225203 42225535 -142063127 + AluY SINE Alu 1 305 -6 23 54 0 0 chr4 42225718 42225755 -142062907 + AT_rich Low_complexity Low_complexity 1 37 0 412 312 138 4 chr4 42225945 42226198 -142062464 - L2 LINE L2 -15 3298 3012 540 310 29 36 chr4 42226845 42227126 -142061536 - MLT1J LTR MaLR -209 302 24 180 0 0 0 chr4 42227584 42227604 -142061058 + (TG)n Simple_repeat Simple_repeat 2 21 0 632 288 13 0 chr4 42228512 42228665 -142059997 - MIR SINE MIR -98 164 10 350 323 169 60 chr4 42230618 42231020 -142057642 - L2 LINE L2 0 3272 2827 498 233 214 37 chr4 42231177 42231392 -142057270 - MIR SINE MIR -4 258 6 2455 114 141 5 chr4 42231398 42231775 -142056887 + MSTA LTR MaLR 1 428 0 22 56 0 0 chr4 42232140 42232176 -142056486 + AT_rich Low_complexity Low_complexity 1 36 0 542 241 75 35 chr4 42232221 42232420 -142056242 - MLT1L LTR MaLR 0 615 409 27 29 0 0 chr4 42234225 42234259 -142054403 + AT_rich Low_complexity Low_complexity 1 34 0 703 150 56 50 chr4 42234460 42234620 -142054042 + L1MB7 LINE L1 6008 6168 -16 308 219 45 63 chr4 42234717 42234870 -142053792 - MLT1G LTR MaLR -13 577 421 264 287 43 17 chr4 42235003 42235118 -142053544 - MLT1I LTR MaLR -265 144 27 1965 174 59 50 chr4 42235236 42235660 -142053002 - MSTC LTR MaLR 0 428 1 678 260 96 23 chr4 42235920 42236139 -142052523 + MIR SINE MIR 28 262 0 290 312 178 7 chr4 42236152 42236428 -142052234 - L2 LINE L2 -530 2784 2462 2802 188 26 42 chr4 42236679 42237247 -142051415 - MLT1F1 LTR MaLR -8 559 1 2186 121 3 22 chr4 42237434 42237749 -142050913 - AluSx SINE Alu -3 309 1 186 43 0 0 chr4 42237766 42237789 -142050873 + (CCA)n Simple_repeat Simple_repeat 1 23 0 797 170 21 21 chr4 42237949 42238090 -142050572 - FLAM_C SINE Alu -1 142 2 180 111 0 0 chr4 42238108 42238135 -142050527 + (T)n Simple_repeat Simple_repeat 1 27 0 436 209 281 36 chr4 42238188 42238327 -142050335 - MER5B DNA MER1_type 0 178 6 256 224 0 0 chr4 42238677 42238726 -142049936 - L2 LINE L2 0 3313 3265 1217 241 30 45 chr4 42239124 42239460 -142049202 + MLT1H LTR MaLR 23 353 -196 952 193 45 5 chr4 42239474 42239676 -142048986 - MER20 DNA MER1_type -4 215 6 236 208 151 0 chr4 42239697 42239750 -142048912 + MLT1L LTR MaLR 343 403 -146 205 286 174 0 chr4 42240294 42240392 -142048270 + L2 LINE L2 2933 3047 -225 1757 159 7 7 chr4 42240446 42240735 -142047927 - AluJo SINE Alu -23 289 1 330 380 7 15 chr4 42240827 42240964 -142047698 - L2 LINE L2 -18 3254 3119 275 373 0 17 chr4 42241235 42241353 -142047309 + MER5B DNA MER1_type 4 119 -59 210 193 0 0 chr4 42241353 42241410 -142047252 + (TA)n Simple_repeat Simple_repeat 2 58 0 232 239 0 0 chr4 42241410 42241456 -142047206 + MER5B DNA MER1_type 128 173 -5 468 260 50 98 chr4 42241490 42241828 -142046834 - L2 LINE L2 -1195 2119 1798 2428 60 0 13 chr4 42241851 42242152 -142046510 - AluY SINE Alu -14 297 1 653 258 7 0 chr4 42243984 42244139 -142044523 + MIR SINE MIR 90 245 -17 2965 149 149 2 chr4 42244563 42245119 -142043543 + L1MD3 LINE L1 7356 7993 -2 1129 231 73 55 chr4 42245243 42245624 -142043038 - L2 LINE L2 -36 3277 2890 2147 107 10 3 chr4 42245859 42246157 -142042505 + AluSx SINE Alu 1 300 -12 2316 89 0 32 chr4 42248339 42248652 -142040010 - AluSq SINE Alu -10 303 1 1167 249 128 19 chr4 42248833 42249295 -142039367 - L2 LINE L2 0 3313 2756 195 69 0 0 chr4 42249628 42249657 -142039005 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 2148 109 16 7 chr4 42249728 42250032 -142038630 + AluSx SINE Alu 1 307 -5 392 276 157 33 chr4 42250155 42250365 -142038297 + MLT1L LTR MaLR 150 385 -230 330 274 105 8 chr4 42250391 42250515 -142038147 + MLT1L LTR MaLR 475 610 -5 360 257 34 84 chr4 42250793 42251030 -142037632 - L1M4 LINE L1 -3525 2621 2397 729 12 0 0 chr4 42251319 42251401 -142037261 - L1PA3 LINE L1 -1 6154 6073 400 222 109 154 chr4 42252734 42252795 -142035867 - MIR SINE MIR -51 211 149 2122 84 27 34 chr4 42252795 42253091 -142035571 - AluSc SINE Alu -15 294 1 400 222 109 154 chr4 42253091 42253250 -142035412 - MIR SINE MIR -113 149 1 195 167 28 0 chr4 42253325 42253361 -142035301 - L3b LINE CR1 -8 1575 1539 10513 30 0 0 chr4 42254004 42255228 -142033434 - L1PA3 LINE L1 -856 5290 4067 7899 25 1 0 chr4 42255228 42256098 -142032564 + L1PA3 LINE L1 5283 6154 -1 2276 114 0 0 chr4 42256409 42256715 -142031947 + AluSx SINE Alu 2 307 -5 451 232 20 0 chr4 42257181 42257280 -142031382 - MLT1I LTR MaLR -15 394 294 2211 116 0 3 chr4 42257605 42257898 -142030764 + AluSx SINE Alu 1 292 -20 565 161 93 0 chr4 42258785 42258903 -142029759 + L1MA4 LINE L1 6172 6300 0 527 237 0 0 chr4 42309270 42309388 -141979274 + MIR SINE MIR 132 249 -13 959 140 35 0 chr4 42309556 42309727 -141978935 - L1MB3 LINE L1 0 6183 6007 522 334 78 22 chr4 42311782 42312282 -141976380 + L2 LINE L2 1744 2271 -1043 213 320 175 21 chr4 42312995 42313092 -141975570 + L2 LINE L2 3136 3247 -25 223 344 32 39 chr4 42313113 42313267 -141975395 + L3 LINE CR1 1424 1576 -1 462 310 65 10 chr4 42314168 42314368 -141974294 - MIR SINE MIR 0 262 52 236 235 20 0 chr4 42314565 42314616 -141974046 - L2 LINE L2 -15 3257 3206 396 0 0 0 chr4 42316059 42316103 -141972559 + (CA)n Simple_repeat Simple_repeat 2 45 0 1476 252 57 12 chr4 42317469 42317890 -141970772 + MLT1J1 LTR MaLR 1 440 -6 189 306 56 0 chr4 42318341 42318413 -141970249 - MIR SINE MIR -76 132 57 252 310 85 64 chr4 42318606 42318996 -141969666 - L2 LINE L2 -935 2379 1982 268 348 36 0 chr4 42319090 42319202 -141969460 - L3 LINE CR1 -1008 569 454 421 261 46 31 chr4 42319281 42319411 -141969251 + MER94 DNA DNA 1 132 -2 335 267 181 19 chr4 42319913 42320018 -141968644 - L2 LINE L2 0 3313 3192 1080 196 28 14 chr4 42320842 42321078 -141967584 - AluJb SINE Alu 0 305 67 401 211 86 97 chr4 42321777 42321952 -141966710 - MER104 DNA Tc2 -5 175 3 397 349 29 34 chr4 42321968 42322177 -141966485 - L2 LINE L2 -850 2464 2257 862 164 7 33 chr4 42322437 42322589 -141966073 + AluJo SINE Alu 6 153 -159 666 272 53 19 chr4 42322727 42322933 -141965729 + MIR SINE MIR 3 215 -47 195 162 0 0 chr4 42322980 42323017 -141965645 + GA-rich Low_complexity Low_complexity 3 39 0 2006 116 0 0 chr4 42323164 42323422 -141965240 + AluSq SINE Alu 1 258 -55 198 233 174 35 chr4 42323488 42323574 -141965088 - L2 LINE L2 -21 3251 3154 487 294 28 33 chr4 42324382 42324562 -141964100 + MIR3 SINE MIR 19 197 -11 422 268 71 0 chr4 42324595 42324722 -141963940 - MIR SINE MIR -6 256 121 368 230 46 0 chr4 42326581 42326668 -141961994 + MIR SINE MIR 72 162 -100 1152 255 90 53 chr4 42328498 42328933 -141959729 - MLT1J LTR MaLR -60 451 1 194 333 0 16 chr4 42329189 42329252 -141959410 - L2 LINE L2 -196 3076 3015 290 271 114 65 chr4 42329324 42329586 -141959076 - MLT1K LTR MaLR -151 437 163 534 227 107 70 chr4 42329668 42329910 -141958752 + L2 LINE L2 3058 3308 -5 2111 121 0 0 chr4 42330982 42331263 -141957399 - AluSx SINE Alu -31 281 1 26 0 0 0 chr4 42331265 42331291 -141957371 + AT_rich Low_complexity Low_complexity 1 26 0 254 71 0 24 chr4 42331666 42331708 -141956954 + (GA)n Simple_repeat Simple_repeat 1 41 0 2118 156 36 46 chr4 42331843 42332259 -141956403 - L1MA7 LINE L1 0 6291 5880 486 274 51 25 chr4 42332281 42332438 -141956224 + MIR SINE MIR 46 206 -56 308 229 10 62 chr4 42332454 42332550 -141956112 + L1MC4 LINE L1 6613 6703 -1339 303 157 37 46 chr4 42332550 42332658 -141956004 + (CATATA)n Simple_repeat Simple_repeat 2 108 0 23 33 0 0 chr4 42333591 42333621 -141955041 + AT_rich Low_complexity Low_complexity 1 30 0 693 267 92 5 chr4 42334438 42334655 -141954007 - MIR SINE MIR 0 262 27 766 226 81 60 chr4 42334839 42335074 -141953588 - MIR SINE MIR -18 244 5 212 162 0 0 chr4 42335096 42335133 -141953529 + MIR SINE MIR 170 206 -56 411 318 0 31 chr4 42337349 42337478 -141951184 + L2 LINE L2 3148 3272 0 378 0 0 0 chr4 42338129 42338171 -141950491 + (TG)n Simple_repeat Simple_repeat 2 43 0 742 232 59 32 chr4 42338265 42338485 -141950177 - MER112 DNA MER1_type -6 254 29 2121 132 0 0 chr4 42338588 42338884 -141949778 + AluSx SINE Alu 1 296 -16 629 318 81 0 chr4 42338908 42339144 -141949518 - MIR SINE MIR 0 262 8 2618 154 41 30 chr4 42340187 42340466 -141948196 - MLT1C LTR MaLR -1 466 192 234 0 0 0 chr4 42340466 42340492 -141948170 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 1913 138 7 3 chr4 42340494 42340776 -141947886 - AluSq SINE Alu -30 283 1 2618 154 41 30 chr4 42340776 42340954 -141947708 - MLT1C LTR MaLR -275 192 1 2515 169 24 14 chr4 42343597 42344011 -141944651 + MER47B DNA MER2_type 1 418 0 270 279 117 9 chr4 42344713 42344824 -141943838 + MIR SINE MIR 104 226 -36 731 166 13 76 chr4 42345143 42345300 -141943362 - BC200 scRNA scRNA -53 147 1 636 275 50 18 chr4 42347539 42347761 -141940901 + MIR SINE MIR 28 256 -6 799 200 35 0 chr4 42348063 42348233 -141940429 + MER104 DNA MER2_type 4 179 -1 22 35 0 0 chr4 42349281 42349310 -141939352 + AT_rich Low_complexity Low_complexity 1 29 0 939 230 92 18 chr4 42349400 42349782 -141938880 - L1ME4a LINE L1 0 6121 5712 21 0 0 0 chr4 42351650 42351671 -141936991 + AT_rich Low_complexity Low_complexity 1 21 0 1524 123 0 0 chr4 42352594 42352606 -141936056 - AluSq SINE Alu -20 293 282 351 0 0 0 chr4 42352606 42352645 -141936017 + (TG)n Simple_repeat Simple_repeat 1 39 0 1524 123 0 0 chr4 42352645 42352844 -141935818 - AluSq SINE Alu -30 283 82 595 178 105 40 chr4 42353157 42353207 -141935455 + MER5B DNA MER1_type 1 46 -132 1588 168 3 71 chr4 42353207 42353529 -141935133 + AluJo SINE Alu 1 300 -12 595 178 105 40 chr4 42353529 42353630 -141935032 + MER5B DNA MER1_type 46 162 -16 390 239 46 28 chr4 42353749 42353858 -141934804 - L2 LINE L2 -2 3311 3201 348 169 146 0 chr4 42354313 42354402 -141934260 - Charlie4 DNA MER1_type -16 1945 1844 1140 102 45 0 chr4 42356425 42356582 -141932080 + AluSc SINE Alu 128 291 -18 890 134 8 15 chr4 42357321 42357455 -141931207 + FLAM_C SINE Alu 1 133 0 21 36 0 0 chr4 42357455 42357483 -141931179 + AT_rich Low_complexity Low_complexity 1 28 0 2664 125 14 8 chr4 42358165 42358525 -141930137 - THE1B LTR MaLR 0 364 3 564 283 66 28 chr4 42358565 42358777 -141929885 + MIR SINE MIR 24 243 -19 744 173 154 0 chr4 42358913 42359075 -141929587 - MER5A DNA MER1_type -2 187 1 387 0 0 0 chr4 42360869 42360912 -141927750 + (CA)n Simple_repeat Simple_repeat 2 44 0 623 95 0 25 chr4 42361148 42361379 -141927283 + AluSg SINE Alu 1 303 -7 2206 119 0 0 chr4 42361564 42361859 -141926803 + AluSx SINE Alu 6 300 -12 372 346 31 12 chr4 42362314 42362476 -141926186 + MIR SINE MIR 78 242 -20 261 344 119 13 chr4 42363158 42363309 -141925353 - L2 LINE L2 0 3272 3106 397 222 19 28 chr4 42364000 42364021 -141924641 + MER103 DNA DNA 18 38 -128 2210 165 5 16 chr4 42364021 42364391 -141924271 - MER47A DNA MER2_type 0 366 1 397 222 19 28 chr4 42364391 42364477 -141924185 + MER103 DNA DNA 38 124 -42 328 216 0 34 chr4 42364548 42364636 -141924026 - Zaphod DNA AcHobo -5 4026 3942 2092 134 7 0 chr4 42366352 42366644 -141922018 + AluSx SINE Alu 1 294 -18 1887 108 15 8 chr4 42366644 42366910 -141921752 + AluSp SINE Alu 44 313 0 660 295 43 17 chr4 42367042 42367276 -141921386 - MIR SINE MIR -3 259 20 207 0 0 0 chr4 42367309 42367332 -141921330 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2074 57 4 0 chr4 42367412 42367657 -141921005 - L1PA7 LINE L1 -4 6150 5905 754 156 14 57 chr4 42371011 42371152 -141917510 + AluJb SINE Alu 157 291 -21 905 110 59 7 chr4 42371162 42371298 -141917364 + L1PA10 LINE L1 6025 6167 -1 2185 125 6 6 chr4 42372136 42372448 -141916214 - AluSx SINE Alu 0 312 1 476 273 91 7 chr4 42375802 42375945 -141912717 - MIR SINE MIR -55 207 53 647 199 81 0 chr4 42376047 42376183 -141912479 + MIR SINE MIR 33 179 -83 266 278 67 22 chr4 42378248 42378338 -141910324 - L2 LINE L2 -40 3232 3139 413 329 57 0 chr4 42378349 42378507 -141910155 - MIR3 SINE MIR -11 197 31 504 308 141 34 chr4 42379575 42379809 -141908853 + L2 LINE L2 3014 3272 0 207 298 0 0 chr4 42379810 42379857 -141908805 + MIR SINE MIR 23 69 -139 2163 109 0 50 chr4 42380936 42381257 -141907405 + AluSx SINE Alu 1 305 -7 313 274 195 40 chr4 42381429 42381655 -141907007 + MIR SINE MIR 1 261 -1 212 177 44 44 chr4 42383011 42383124 -141905538 + (TA)n Simple_repeat Simple_repeat 2 114 0 839 274 103 21 chr4 42384060 42384577 -141904085 - L1ME LINE L1 -298 5823 5265 28 61 0 0 chr4 42384664 42384713 -141903949 + AT_rich Low_complexity Low_complexity 1 49 0 364 339 42 10 chr4 42384861 42385150 -141903512 - L1ME LINE L1 -1177 4969 4672 264 119 46 184 chr4 42385945 42386054 -141902608 - MER53 DNA DNA 0 189 96 * 294 174 29 0 chr4 42385990 42386059 -141902603 + MER53 DNA DNA 36 106 -83 428 240 16 0 chr4 42386066 42386187 -141902475 - MER53 DNA DNA -65 124 2 383 286 11 0 chr4 42386400 42386491 -141902171 - MER5A DNA MER1_type -89 100 9 200 94 19 75 chr4 42386812 42386865 -141901797 + (TTTTTG)n Simple_repeat Simple_repeat 1 50 0 237 146 0 0 chr4 42388444 42388492 -141900170 + (A)n Simple_repeat Simple_repeat 1 48 0 2061 145 3 3 chr4 42389872 42390183 -141898479 - AluJb SINE Alu -1 311 1 2328 84 7 7 chr4 42390454 42390753 -141897909 - AluSq SINE Alu -14 299 1 263 216 85 111 chr4 42391143 42391296 -141897366 - MER102b DNA MER1_type -1 340 192 230 236 36 18 chr4 42391873 42391928 -141896734 - MIR SINE MIR -59 149 94 2366 143 48 21 chr4 42392170 42392591 -141896071 - MSTB1 LTR MaLR 0 432 1 21 0 0 0 chr4 42393778 42393799 -141894863 + AT_rich Low_complexity Low_complexity 1 21 0 318 259 98 0 chr4 42393867 42393979 -141894683 + L1ME4a LINE L1 5321 5443 -721 820 121 8 15 chr4 42393983 42394115 -141894547 + AluJb SINE Alu 1 131 -181 625 291 53 27 chr4 42394260 42394546 -141894116 + L1ME3A LINE L1 5257 5557 -613 5071 85 36 1 chr4 42394546 42395262 -141893400 + L1PA11 LINE L1 5434 6174 0 625 291 53 27 chr4 42395262 42395350 -141893312 + L1ME3A LINE L1 5557 5641 -529 367 294 31 31 chr4 42395451 42395614 -141893048 + L1ME3A LINE L1 5789 5951 -219 272 295 98 34 chr4 42395798 42396032 -141892630 - L1ME LINE L1 -557 5613 5365 1747 151 44 4 chr4 42396111 42396433 -141892229 - AluSx SINE Alu 0 333 1 609 284 99 3 chr4 42396579 42396941 -141891721 - L1ME LINE L1 -1176 4970 4574 335 263 143 8 chr4 42396947 42397198 -141891464 - L1ME LINE L1 -1785 4361 4077 331 262 33 33 chr4 42397194 42397377 -141891285 + L1ME4a LINE L1 5705 5887 -234 * 1881 174 0 3 chr4 42397380 42397685 -141890977 + AluJb SINE Alu 1 304 -8 347 105 18 0 chr4 42397738 42397795 -141890867 + (TA)n Simple_repeat Simple_repeat 1 58 0 933 233 11 0 chr4 42398540 42398720 -141889942 + MIR SINE MIR 20 201 -61 325 292 83 24 chr4 42399007 42399175 -141889487 + L1ME4a LINE L1 5942 6119 -2 194 31 0 62 chr4 42400258 42400290 -141888372 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 1823 153 28 3 chr4 42400353 42400640 -141888022 + AluSx SINE Alu 1 294 -18 2792 92 0 4 chr4 42401287 42401696 -141886966 + L1PA8 LINE L1 5746 6151 -21 389 304 96 72 chr4 42402256 42402727 -141885935 + MLT1L LTR MaLR 107 615 0 2260 163 30 2 chr4 42402868 42403273 -141885389 - MSTB LTR MaLR 0 426 11 22 56 0 0 chr4 42403704 42403740 -141884922 + AT_rich Low_complexity Low_complexity 1 36 0 1186 127 0 50 chr4 42405841 42406062 -141882600 + MLT1C LTR MaLR 1 210 -257 1426 190 56 0 chr4 42406092 42406361 -141882301 + MLT1C LTR MaLR 184 467 0 346 304 27 18 chr4 42406599 42406711 -141881951 + MIR3 SINE MIR 92 204 -4 558 246 24 8 chr4 42407099 42407225 -141881437 - MIR SINE MIR -95 167 40 1725 180 26 7 chr4 42407230 42407536 -141881126 - AluJo SINE Alu 0 312 1 25 0 0 0 chr4 42408089 42408114 -141880548 + AT_rich Low_complexity Low_complexity 1 25 0 334 351 155 7 chr4 42408197 42408345 -141880317 - L2 LINE L2 -1 3271 3102 199 281 0 0 chr4 42408364 42408421 -141880241 + L2 LINE L2 3257 3313 0 318 276 95 9 chr4 42408434 42408550 -141880112 - L2 LINE L2 -181 3091 2966 224 393 23 17 chr4 42408676 42408849 -141879813 - L2 LINE L2 -459 2855 2682 629 247 150 68 chr4 42409034 42409526 -141879136 - MLT1H1 LTR MaLR -8 547 19 499 331 149 14 chr4 42409544 42409913 -141878749 - L2 LINE L2 -889 2425 2007 292 167 0 33 chr4 42409946 42410006 -141878656 - MLT1I LTR MaLR -6 403 346 1185 90 6 0 chr4 42410006 42410183 -141878479 + MER41B LTR ERV1 1 178 -457 866 158 30 6 chr4 42410184 42410349 -141878313 + MER41A LTR ERV1 386 554 0 215 229 0 0 chr4 42410701 42410749 -141877913 - L2 LINE L2 -1357 1957 1910 301 143 0 0 chr4 42412322 42412378 -141876284 + L1PA15 LINE L1 6110 6165 0 2160 116 30 0 chr4 42412381 42412684 -141875978 + AluSx SINE Alu 1 312 0 186 43 0 0 chr4 42413015 42413038 -141875624 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 2151 94 38 7 chr4 42413583 42413870 -141874792 + AluSg SINE Alu 1 296 -14 180 0 0 0 chr4 42415004 42415024 -141873638 + (TAAAAA)n Simple_repeat Simple_repeat 5 24 0 281 250 14 0 chr4 42416317 42416389 -141872273 - MLT1K LTR MaLR -24 564 492 684 278 100 14 chr4 42417156 42417538 -141871124 - MLT1J LTR MaLR -53 458 1 264 258 117 62 chr4 42418488 42418616 -141870046 + MIR SINE MIR 112 246 -16 268 246 15 15 chr4 42419023 42419088 -141869574 + L2 LINE L2 3249 3313 0 323 335 22 75 chr4 42419716 42419994 -141868668 - L2 LINE L2 -455 2859 2597 482 217 65 16 chr4 42420714 42420898 -141867764 - MER113 DNA MER1_type? -326 195 3 234 167 71 0 chr4 42420997 42421039 -141867623 + MIR SINE MIR 128 172 -90 370 282 50 55 chr4 42421687 42421868 -141866794 + MIR SINE MIR 23 202 -60 820 260 55 28 chr4 42422597 42422851 -141865811 + MIR SINE MIR 2 262 0 1936 121 50 0 chr4 42423423 42423705 -141864957 - AluSq SINE Alu -17 296 1 736 214 108 72 chr4 42423947 42424313 -141864349 - MLT1J LTR MaLR -120 330 1 258 255 66 38 chr4 42424398 42424504 -141864158 + L1MC/D LINE L1 5796 5904 -1904 646 119 19 6 chr4 42425096 42425112 -141863550 - L1ME LINE L1 -516 5605 5591 1918 156 0 0 chr4 42425112 42425426 -141863236 - AluSx SINE Alu 0 314 1 3829 108 6 2 chr4 42425426 42425936 -141862726 - L1PA15 LINE L1 -16 6149 5638 646 119 19 6 chr4 42425936 42426046 -141862616 - L1ME LINE L1 -529 5592 5475 1949 135 3 0 chr4 42426193 42426496 -141862166 - AluSq SINE Alu 0 304 1 804 152 0 0 chr4 42426995 42427120 -141861542 - L1MB7 LINE L1 -19 6165 6041 2173 129 3 0 chr4 42427171 42427481 -141861181 + AluSq SINE Alu 1 311 -2 382 380 78 0 chr4 42427569 42427774 -141860888 + MIR SINE MIR 28 248 -14 197 293 240 0 chr4 42428175 42428250 -141860412 + MIR SINE MIR 7 99 -163 328 263 11 42 chr4 42428656 42428751 -141859911 - Charlie4a DNA MER1_type -7 501 410 1680 140 31 20 chr4 42428765 42429057 -141859605 + L1MA8 LINE L1 5990 6284 -7 29 47 0 0 chr4 42429058 42429101 -141859561 + AT_rich Low_complexity Low_complexity 1 43 0 1777 186 58 13 chr4 42429117 42429510 -141859152 - Charlie4a DNA MER1_type -97 411 1 808 275 24 40 chr4 42430161 42430412 -141858250 + MIR SINE MIR 13 259 -3 315 293 140 18 chr4 42430638 42430802 -141857860 - MIR SINE MIR 0 262 79 1287 190 34 78 chr4 42431945 42432266 -141856396 - AluJo SINE Alu -5 307 1 904 131 29 0 chr4 42432740 42432877 -141855785 - MER5A DNA MER1_type -48 141 1 398 337 20 45 chr4 42432882 42433081 -141855581 + MIR SINE MIR 17 210 -52 230 160 0 40 chr4 42433521 42433596 -141855066 + A-rich Low_complexity Low_complexity 1 72 0 215 336 0 0 chr4 42434778 42434897 -141853765 + T-rich Low_complexity Low_complexity 1 119 0 210 71 0 0 chr4 42435294 42435322 -141853340 + (CCG)n Simple_repeat Simple_repeat 3 30 0 307 288 73 68 chr4 42435446 42435637 -141853025 + L1M2 LINE L1 687 878 -5971 25 51 0 0 chr4 42437488 42437527 -141851135 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr4 42439032 42439054 -141849608 + AT_rich Low_complexity Low_complexity 1 22 0 213 309 0 0 chr4 42442926 42442981 -141845681 + MIR SINE MIR 200 254 -8 216 0 0 0 chr4 42444026 42444050 -141844612 + (TC)n Simple_repeat Simple_repeat 1 24 0 391 378 38 24 chr4 42444109 42444606 -141844056 + L2 LINE L2 1396 1899 -1415 1207 255 43 23 chr4 42444650 42444952 -141843710 + MLT1I LTR MaLR 7 314 -95 381 337 20 40 chr4 42444965 42445167 -141843495 - L2 LINE L2 -219 3053 2856 183 80 0 0 chr4 42445595 42445620 -141843042 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 536 146 10 0 chr4 42446839 42446942 -141841720 + CT-rich Low_complexity Low_complexity 3 106 0 29 0 0 0 chr4 42447814 42447843 -141840819 + AT_rich Low_complexity Low_complexity 1 29 0 703 227 43 138 chr4 42447849 42448290 -141840372 - L1ME4a LINE L1 -236 5885 5487 2103 122 0 3 chr4 42448477 42448787 -141839875 - AluSq SINE Alu 0 309 1 37 0 0 0 chr4 42448920 42448957 -141839705 + AT_rich Low_complexity Low_complexity 1 37 0 1423 144 0 92 chr4 42448959 42449230 -141839432 - AluJb SINE Alu -66 246 1 1151 226 32 63 chr4 42449593 42450066 -141838596 - L1MC5 LINE L1 -51 7910 7453 2099 118 6 16 chr4 42450074 42450388 -141838274 + AluSx SINE Alu 1 311 -1 404 152 25 0 chr4 42450388 42450467 -141838195 + GA-rich Low_complexity Low_complexity 1 81 0 325 257 144 8 chr4 42450482 42450732 -141837930 - L1MC5 LINE L1 -527 7478 7260 * 1303 158 123 145 chr4 42450726 42451296 -141837366 - L1MC4a LINE L1 -632 7232 6700 413 258 114 30 chr4 42451518 42451685 -141836977 - L2 LINE L2 -202 3070 2890 * 1434 292 77 10 chr4 42451680 42452160 -141836502 + L3 LINE CR1 355 866 -711 4683 112 5 0 chr4 42452259 42452896 -141835766 + L1PA13 LINE L1 5522 6161 -2 316 272 41 124 chr4 42453080 42453249 -141835413 + L3 LINE CR1 1265 1419 -158 216 286 0 0 chr4 42453526 42453568 -141835094 + MIR SINE MIR 28 69 -139 939 252 24 19 chr4 42453596 42453806 -141834856 + MLT1H1 LTR MaLR 2 212 -343 189 0 0 0 chr4 42453822 42453843 -141834819 + (GA)n Simple_repeat Simple_repeat 2 22 0 588 214 78 58 chr4 42453880 42454034 -141834628 + MLT1G1 LTR MaLR 439 595 0 345 286 31 0 chr4 42454037 42454135 -141834527 + MIR3 SINE MIR 95 195 -13 2393 193 35 2 chr4 42454151 42454637 -141834025 - Charlie1b DNA MER1_type -21 502 1 1926 82 11 32 chr4 42455822 42456103 -141832559 + L1MA1 LINE L1 6028 6302 0 4196 197 45 85 chr4 42456915 42457852 -141830810 + L1MD2 LINE L1 5057 5926 -433 2157 108 7 19 chr4 42457852 42458159 -141830503 + AluSq SINE Alu 1 303 -10 4196 197 45 85 chr4 42458159 42458564 -141830098 + L1MD2 LINE L1 5926 6346 -13 655 303 32 0 chr4 42458775 42458930 -141829732 + MLT1I LTR MaLR 42 201 -208 311 249 167 90 chr4 42459074 42459476 -141829186 + L1ME4a LINE L1 5550 5982 -139 * 807 264 135 19 chr4 42459445 42460102 -141828560 + L1MC4a LINE L1 5171 5396 -750 311 215 141 15 chr4 42460361 42460496 -141828166 + L1ME4a LINE L1 5968 6119 -2 904 30 0 0 chr4 42460987 42461087 -141827575 + L1PA7 LINE L1 6052 6151 -3 707 255 19 0 chr4 42461153 42461310 -141827352 - U1 snRNA snRNA -3 162 3 303 305 112 15 chr4 42461392 42461521 -141827141 + MIR3 SINE MIR 14 158 -50 2001 65 40 0 chr4 42461588 42461836 -141826826 - L1PA8 LINE L1 -3 6169 5912 371 62 0 0 chr4 42461837 42461885 -141826777 + L1P LINE L1 5343 5390 -741 733 317 61 28 chr4 42461947 42462310 -141826352 - MLT1K LTR MaLR -113 475 101 213 299 45 0 chr4 42462414 42462481 -141826181 + MIR SINE MIR 172 241 -21 306 284 101 0 chr4 42462613 42462722 -141825940 + MER117 DNA MER1_type 21 140 -57 1973 121 36 0 chr4 42462840 42463121 -141825541 + AluJo SINE Alu 1 291 -21 242 222 189 33 chr4 42463192 42463282 -141825380 + L2 LINE L2 3168 3271 -1 22 35 0 0 chr4 42463407 42463436 -141825226 + AT_rich Low_complexity Low_complexity 1 29 0 526 323 124 4 chr4 42463954 42464180 -141824482 + MIR SINE MIR 10 262 0 1486 193 167 44 chr4 42464860 42465310 -141823352 + MLT1D LTR MaLR 1 505 0 324 0 0 0 chr4 42465330 42465366 -141823296 + (TG)n Simple_repeat Simple_repeat 2 37 0 422 264 37 48 chr4 42465370 42465406 -141823256 - MIR3 SINE MIR -67 141 106 1982 145 3 0 chr4 42465406 42465702 -141822960 - AluSx SINE Alu -15 297 1 422 264 37 48 chr4 42465702 42465854 -141822808 - MIR3 SINE MIR -102 106 4 524 268 97 63 chr4 42465943 42466324 -141822338 - L1MCc LINE L1 -5223 1200 807 31 58 0 0 chr4 42467618 42467670 -141820992 + AT_rich Low_complexity Low_complexity 1 52 0 304 293 72 65 chr4 42467735 42468025 -141820637 + HAL1 LINE L1 849 1140 -1367 1691 190 3 7 chr4 42468048 42468348 -141820314 + AluJb SINE Alu 1 299 -13 339 85 0 0 chr4 42468521 42468568 -141820094 + (CA)n Simple_repeat Simple_repeat 2 48 0 2258 173 45 28 chr4 42468570 42468992 -141819670 + Tigger2a DNA MER2_type 5 433 -1 1042 99 0 0 chr4 42469487 42469629 -141819033 + AluSp/q SINE Alu 160 301 -12 2031 138 0 0 chr4 42469760 42470078 -141818584 - AluSx SINE Alu 0 318 1 849 286 31 12 chr4 42470105 42470360 -141818302 - MIR SINE MIR -1 261 2 263 209 122 96 chr4 42470462 42470577 -141818085 + L2 LINE L2 2844 2961 -352 242 311 120 12 chr4 42470640 42470807 -141817855 + L2 LINE L2 3118 3302 -11 355 316 88 7 chr4 42471080 42471216 -141817446 - MIR SINE MIR -115 147 1 261 119 51 0 chr4 42471315 42471374 -141817288 - MER96B DNA MER1_type? -61 356 295 922 142 171 17 chr4 42471379 42471555 -141817107 + AluSg/x SINE Alu 89 291 -21 216 0 0 0 chr4 42471555 42471579 -141817083 + (CA)n Simple_repeat Simple_repeat 2 25 0 749 198 23 23 chr4 42471693 42471870 -141816792 - MER96B DNA MER1_type? -238 179 3 310 148 13 0 chr4 42471996 42472052 -141816610 + AluS SINE Alu 224 271 -29 2252 113 3 0 chr4 42472371 42472664 -141815998 + AluSx SINE Alu 1 294 -18 300 53 0 0 chr4 42472703 42472741 -141815921 + (TA)n Simple_repeat Simple_repeat 2 39 0 247 36 0 0 chr4 42472952 42472980 -141815682 - AluY SINE Alu -256 44 17 355 307 88 7 chr4 42477025 42477162 -141811500 - MIR SINE MIR -109 153 6 291 93 0 0 chr4 42477484 42477527 -141811135 + (GA)n Simple_repeat Simple_repeat 2 44 0 649 236 94 43 chr4 42478082 42478315 -141810347 + MIR SINE MIR 6 250 -12 26 0 0 0 chr4 42478960 42478986 -141809676 + AT_rich Low_complexity Low_complexity 1 26 0 2947 132 21 12 chr4 42479264 42479688 -141808974 - MSTA LTR MaLR 0 428 1 213 379 48 0 chr4 42479818 42479921 -141808741 - MIR SINE MIR -153 109 2 400 188 196 80 chr4 42480316 42480454 -141808208 - MIR SINE MIR -101 161 8 238 238 138 129 chr4 42480477 42480717 -141807945 + L3 LINE CR1 1303 1544 -33 209 148 19 74 chr4 42480929 42480983 -141807679 + L3 LINE CR1 1527 1577 0 1331 274 64 9 chr4 42481093 42481572 -141807090 + L2 LINE L2 2540 3039 -274 304 312 91 19 chr4 42481572 42481726 -141806936 - MER91B DNA MER1_type 0 190 26 837 207 60 56 chr4 42481751 42482017 -141806645 + L2 LINE L2 3047 3313 0 765 177 158 13 chr4 42483822 42483980 -141804682 + MER5A DNA MER1_type 9 189 0 2053 121 16 3 chr4 42486920 42487226 -141801436 - AluSx SINE Alu -2 310 1 993 164 11 11 chr4 42487399 42487576 -141801086 + FRAM SINE Alu 1 176 0 252 157 57 0 chr4 42488152 42488222 -141800440 - L1ME4a LINE L1 -1 6120 6047 1574 171 45 11 chr4 42489074 42489360 -141799302 + AluJb SINE Alu 1 296 -16 1912 204 29 74 chr4 42489363 42489428 -141799234 - MLT1F1 LTR MaLR -103 464 398 1743 192 6 9 chr4 42489428 42489745 -141798917 + L1MB3 LINE L1 5861 6176 -7 1912 204 29 74 chr4 42489745 42490165 -141798497 - MLT1F1 LTR MaLR -169 398 1 1288 243 123 41 chr4 42490165 42490562 -141798100 + L2 LINE L2 2656 3103 -210 2277 127 38 57 chr4 42490562 42490720 -141797942 + THE1B LTR MaLR 1 160 -204 2304 113 0 0 chr4 42490720 42491021 -141797641 - AluSx SINE Alu -11 301 1 2277 127 38 57 chr4 42491021 42491233 -141797429 + THE1B LTR MaLR 160 364 0 1288 243 123 41 chr4 42491233 42491456 -141797206 + L2 LINE L2 3103 3306 -7 2195 126 0 0 chr4 42492042 42492343 -141796319 + AluSx SINE Alu 6 306 -6 222 315 140 21 chr4 42492540 42492683 -141795979 + MIR SINE MIR 20 179 -83 244 197 158 13 chr4 42492743 42492819 -141795843 + MIR SINE MIR 170 256 -6 508 219 19 0 chr4 42492862 42492967 -141795695 + MER81 DNA DNA 1 107 -7 538 234 130 87 chr4 42493171 42493402 -141795260 - MIR SINE MIR -6 256 16 2038 127 34 0 chr4 42493581 42493873 -141794789 + AluSx SINE Alu 7 308 -4 283 301 62 9 chr4 42494254 42494367 -141794295 + MIR3 SINE MIR 81 199 -9 992 144 0 0 chr4 42494566 42494739 -141793923 - AluSg/x SINE Alu 0 314 142 1171 180 45 0 chr4 42496622 42496822 -141791840 + MER3 DNA MER1_type 1 209 0 806 261 28 28 chr4 42496822 42497022 -141791640 + MIR SINE MIR 15 217 -45 715 225 32 59 chr4 42497076 42497263 -141791399 + MER20 DNA MER1_type 37 218 -1 845 242 183 45 chr4 42497493 42497849 -141790813 + L2 LINE L2 2908 3312 -1 206 333 0 0 chr4 42499140 42499188 -141789474 + L2 LINE L2 3153 3200 -72 917 185 114 17 chr4 42499306 42499593 -141789069 - MER33 DNA MER1_type 0 324 50 5434 147 79 11 chr4 42499593 42500442 -141788220 - L1MC1 LINE L1 -39 6294 5358 2191 127 44 41 chr4 42500442 42500805 -141787857 - THE1B LTR MaLR 0 364 1 5434 147 79 11 chr4 42500805 42500988 -141787674 - L1MC1 LINE L1 -975 5358 5189 453 170 0 0 chr4 42501006 42501080 -141787582 - MER33 DNA MER1_type -259 65 1 1212 188 151 0 chr4 42501148 42501393 -141787269 + AluJo SINE Alu 1 282 -30 189 74 0 0 chr4 42501401 42501428 -141787234 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 432 323 7 0 chr4 42501449 42501604 -141787058 - L2 LINE L2 -1023 2291 2136 975 303 126 15 chr4 42501616 42502085 -141786577 + L2 LINE L2 2291 2811 -503 466 301 84 0 chr4 42502290 42502433 -141786229 + L2 LINE L2 3116 3270 -2 1462 173 41 114 chr4 42502676 42503070 -141785592 - MLT1A1 LTR MaLR 0 365 1 357 313 43 17 chr4 42503659 42503774 -141784888 + MIR SINE MIR 8 125 -137 1672 243 51 26 chr4 42503778 42504271 -141784391 - MLT1D LTR MaLR 0 505 1 29 47 0 0 chr4 42504286 42504329 -141784333 + AT_rich Low_complexity Low_complexity 1 43 0 652 254 48 45 chr4 42504402 42504693 -141783969 - LTR16C LTR ERVL -15 476 185 182 196 36 36 chr4 42504889 42504945 -141783717 + MIR SINE MIR 134 189 -73 233 308 31 0 chr4 42505031 42505096 -141783566 + L2 LINE L2 3201 3267 -5 333 208 0 0 chr4 42505107 42505184 -141783478 + (TGGA)n Simple_repeat Simple_repeat 4 80 0 2083 121 4 0 chr4 42505445 42505761 -141782901 - AluSq SINE Alu 0 319 3 398 238 25 0 chr4 42506717 42506797 -141781865 - L2 LINE L2 0 3313 3232 453 328 22 18 chr4 42506934 42507163 -141781499 - L2 LINE L2 -337 2977 2748 786 282 50 38 chr4 42507298 42507560 -141781102 - MLT1J LTR MaLR -246 265 1 297 350 39 0 chr4 42507613 42507716 -141780946 - L2 LINE L2 -18 3254 3148 557 253 47 7 chr4 42507717 42507867 -141780795 + MER5B DNA MER1_type 2 157 -21 281 304 40 64 chr4 42508001 42508126 -141780536 - L2 LINE L2 -219 3053 2932 471 268 151 6 chr4 42510462 42510641 -141778021 + MIR SINE MIR 48 252 -10 21 36 0 0 chr4 42511154 42511182 -141777480 + AT_rich Low_complexity Low_complexity 1 28 0 2206 117 7 0 chr4 42512595 42512894 -141775768 + AluSx SINE Alu 1 301 -11 787 267 122 63 chr4 42513856 42514332 -141774330 - MLT1J LTR MaLR -7 504 1 1118 187 47 0 chr4 42514497 42514711 -141773951 - MIR SINE MIR -3 259 36 190 258 59 86 chr4 42515158 42515344 -141773318 + L2 LINE L2 2851 3031 -241 1172 235 231 20 chr4 42515614 42516104 -141772558 + LTR50 LTR ERVL 43 635 -160 8906 105 8 40 chr4 42516113 42517092 -141771570 - HSMAR2 DNA Mariner -1 1301 293 2200 109 0 0 chr4 42517092 42517385 -141771277 + AluSg SINE Alu 1 293 -17 2330 101 0 3 chr4 42517394 42517700 -141770962 + AluSp SINE Alu 1 305 -8 8906 105 8 40 chr4 42517700 42518052 -141770610 - HSMAR2 DNA Mariner -1017 285 2 396 189 24 0 chr4 42518085 42518174 -141770488 + LTR50 LTR ERVL 434 795 0 337 340 49 28 chr4 42518175 42518319 -141770343 + L2 LINE L2 2657 2803 -511 1397 275 31 21 chr4 42518362 42518787 -141769875 + LTR16A LTR ERVL 16 444 -6 1338 269 49 39 chr4 42518794 42518930 -141769732 + HERV16 LTR ERVL 2 135 -4861 1557 131 8 13 chr4 42518930 42519167 -141769495 - MER46A DNA MER2_type 0 236 1 1338 269 49 39 chr4 42519167 42519520 -141769142 + HERV16 LTR ERVL 135 496 -4500 321 316 0 10 chr4 42569887 42569985 -141718677 - MIR3 SINE MIR -11 197 101 2254 65 44 0 chr4 42570134 42570427 -141718235 + AluY SINE Alu 1 306 -5 716 143 102 34 chr4 42570518 42570665 -141717997 + AluJb SINE Alu 1 157 -155 432 141 0 0 chr4 42572271 42572335 -141716327 + AluJ/FLAM SINE Alu 1 64 -248 198 71 0 0 chr4 42575423 42575451 -141713211 + (TA)n Simple_repeat Simple_repeat 1 28 0 22 0 0 0 chr4 42575696 42575718 -141712944 + AT_rich Low_complexity Low_complexity 1 22 0 848 161 0 0 chr4 42576451 42576569 -141712093 - FLAM_C SINE Alu -11 122 5 426 20 0 0 chr4 42576955 42577006 -141711656 + (TG)n Simple_repeat Simple_repeat 2 52 0 204 317 25 92 chr4 42577842 42577962 -141710700 - MIR SINE MIR -80 182 71 23 0 0 0 chr4 42580590 42580613 -141708049 + GC_rich Low_complexity Low_complexity 1 23 0 495 214 54 18 chr4 42581072 42581184 -141707478 - MIR SINE MIR -130 132 17 1074 144 0 0 chr4 42581942 42582122 -141706540 + (TA)n Simple_repeat Simple_repeat 1 180 0 301 333 0 0 chr4 42582123 42582213 -141706449 + L1MC4 LINE L1 6614 6703 -1339 * 343 238 71 0 chr4 42582157 42582241 -141706421 - L1MC4 LINE L1 -1339 6703 6614 217 200 0 0 chr4 42582241 42582276 -141706386 + (CA)n Simple_repeat Simple_repeat 2 36 0 914 167 155 0 chr4 42582386 42582625 -141706037 - MER63 DNA MER1_type -606 324 49 1213 208 108 46 chr4 42582639 42582990 -141705672 + MLT1B LTR MaLR 2 374 -16 5411 114 47 91 chr4 42583595 42584561 -141704101 - MER49 LTR ERV1 0 923 1 3028 118 197 6 chr4 42584873 42585405 -141703257 + MER51A LTR ERV1 1 634 0 354 309 114 30 chr4 42585411 42585673 -141702989 + L2 LINE L2 2989 3272 0 1636 150 4 11 chr4 42587106 42587411 -141701251 + AluJo SINE Alu 6 308 0 313 185 109 101 chr4 42587418 42587537 -141701125 + FLAM_A SINE Alu 1 120 -13 321 259 23 61 chr4 42587538 42587669 -141700993 - L1MC4 LINE L1 -389 7653 7528 733 238 32 0 chr4 42587701 42587886 -141700776 - L1MC4 LINE L1 -618 7424 7234 23 68 0 0 chr4 42588325 42588369 -141700293 + AT_rich Low_complexity Low_complexity 1 44 0 635 180 218 9 chr4 42588376 42588587 -141700075 - MER112 DNA MER1_type 0 256 2 606 106 279 0 chr4 42590899 42591003 -141697659 - FLAM_C SINE Alu 0 133 1 1197 107 36 6 chr4 42591378 42591546 -141697116 + AluY SINE Alu 1 173 -138 280 146 21 0 chr4 42592316 42592364 -141696298 + L2 LINE L2 3220 3268 -4 336 294 128 28 chr4 42592775 42592955 -141695707 - MIR3 SINE MIR -8 200 3 2353 94 0 0 chr4 42594073 42594371 -141694291 + AluSq SINE Alu 1 298 -15 2310 124 0 6 chr4 42596519 42596833 -141691829 + AluSx SINE Alu 1 312 0 21 0 0 0 chr4 42597192 42597213 -141691449 + AT_rich Low_complexity Low_complexity 1 21 0 2328 81 0 3 chr4 42597784 42598079 -141690583 + AluSc SINE Alu 1 294 -15 313 272 111 28 chr4 42598679 42598896 -141689766 + L1MC4a LINE L1 5639 5873 -1935 2367 113 103 10 chr4 42599231 42599621 -141689041 + MSTA LTR MaLR 2 427 -1 4765 107 15 10 chr4 42599991 42600665 -141687997 + LTR8 LTR ERV1 1 677 -14 1363 181 77 3 chr4 42600716 42601015 -141687647 + MER33 DNA MER1_type 4 324 0 2401 60 0 7 chr4 42601158 42601456 -141687206 - AluSp SINE Alu -6 307 12 676 271 26 26 chr4 42601597 42601789 -141686873 + MLT1I LTR MaLR 98 289 -120 460 243 56 0 chr4 42601987 42602094 -141686568 + L2 LINE L2 3201 3313 0 368 198 32 71 chr4 42602100 42602226 -141686436 - MER69 DNA AcHobo 0 2526 2406 2291 120 0 0 chr4 42602226 42602526 -141686136 - AluSx SINE Alu -11 301 2 1857 150 0 14 chr4 42603075 42603388 -141685274 + AluJb SINE Alu 2 310 0 284 304 11 0 chr4 42603506 42603598 -141685064 + L2 LINE L2 3175 3267 -46 2058 148 0 19 chr4 42604116 42604434 -141684228 - AluJb SINE Alu 0 312 1 1055 195 37 78 chr4 42604922 42605336 -141683326 - MLT1C LTR MaLR 0 467 1 1705 170 3 16 chr4 42605412 42605718 -141682944 + AluJb SINE Alu 1 302 -10 1681 177 40 40 chr4 42605941 42606313 -141682349 + MLT1A2 LTR MaLR 1 372 -2 686 220 249 0 chr4 42606579 42606788 -141681874 - MIR SINE MIR 0 262 2 246 62 0 0 chr4 42606905 42606937 -141681725 + (TG)n Simple_repeat Simple_repeat 2 33 0 297 265 12 0 chr4 42607544 42607627 -141681035 + (TA)n Simple_repeat Simple_repeat 2 85 0 32209 105 12 70 chr4 42607680 42612663 -141675999 - L1PA7 LINE L1 -3 6151 878 18842 26 0 1 chr4 42612663 42615515 -141673147 + L1PA3 LINE L1 3302 6152 -3 32209 105 12 70 chr4 42615515 42616997 -141671665 - L1PA7 LINE L1 -5276 878 78 2100 134 7 0 chr4 42616997 42617303 -141671359 + AluSq SINE Alu 1 308 -5 32209 105 12 70 chr4 42617303 42617367 -141671295 - L1PA7 LINE L1 -6076 78 12 484 145 0 0 chr4 42617387 42617456 -141671206 - AluJ/FRAM SINE Alu -21 291 223 321 149 0 0 chr4 42617557 42617604 -141671058 - Alu SINE Alu -255 48 2 711 159 13 187 chr4 42617618 42617907 -141670755 - MER69 DNA AcHobo -130 2396 2164 1866 140 11 0 chr4 42617907 42618215 -141670447 - AluSx SINE Alu 0 311 1 711 159 13 187 chr4 42618215 42618239 -141670423 - MER69 DNA AcHobo -362 2164 2137 2148 129 0 0 chr4 42618252 42618539 -141670123 - AluSx SINE Alu -25 287 1 27 92 0 0 chr4 42618542 42618618 -141670044 + AT_rich Low_complexity Low_complexity 1 76 0 2174 118 0 0 chr4 42618618 42618906 -141669756 - AluSg SINE Alu -22 288 1 329 130 14 14 chr4 42619696 42619765 -141668897 - L1M4 LINE L1 -1081 5065 4997 4857 155 23 43 chr4 42619793 42620697 -141667965 + L1MB3 LINE L1 5073 5950 -233 2482 173 10 0 chr4 42620697 42621096 -141667566 + MER57A LTR ERV1 1 403 0 4857 155 23 43 chr4 42621096 42621326 -141667336 + L1MB3 LINE L1 5950 6183 0 1707 132 59 179 chr4 42621495 42621583 -141667079 - MER83 LTR ERV1 0 448 351 1506 95 0 11 chr4 42621583 42621773 -141666889 + AluSg/x SINE Alu 83 270 -40 1707 132 59 179 chr4 42621773 42622191 -141666471 - MER83 LTR ERV1 -97 351 3 2470 89 12 12 chr4 42622217 42622554 -141666108 + THE1C LTR MaLR 1 337 -38 6267 111 3 5 chr4 42622554 42623178 -141665484 + THE1C-int LTR MaLR 713 1337 -243 2519 168 75 21 chr4 42623178 42623661 -141665001 + LTR22 LTR ERVK 1 509 0 6267 111 3 5 chr4 42623661 42623905 -141664757 + THE1C-int LTR MaLR 1337 1580 0 2531 142 5 3 chr4 42623905 42624279 -141664383 + THE1C LTR MaLR 1 375 0 2153 162 27 0 chr4 42624280 42624608 -141664054 + MER1B DNA MER1_type 1 337 0 481 245 177 7 chr4 42624749 42624896 -141663766 + MIR SINE MIR 2 173 -89 905 243 0 5 chr4 42624896 42625085 -141663577 + LTR33 LTR ERVL 1 188 -333 864 194 6 0 chr4 42625085 42625245 -141663417 - FAM SINE Alu -7 42 1 2220 198 19 68 chr4 42625411 42625952 -141662710 + LTR9 LTR ERV1 99 612 0 2227 102 7 13 chr4 42626510 42626815 -141661847 + AluSg SINE Alu 1 303 -7 22 70 0 0 chr4 42627475 42627518 -141661144 + AT_rich Low_complexity Low_complexity 1 43 0 1143 168 11 112 chr4 42627519 42627621 -141661041 - LTR37A LTR ERV1 -49 377 266 1433 167 68 48 chr4 42627621 42627914 -141660748 - AluJo SINE Alu -9 303 5 1143 168 11 112 chr4 42627914 42628061 -141660601 - LTR37A LTR ERV1 -160 266 172 1908 192 28 90 chr4 42628061 42628280 -141660382 + MLT1D LTR MaLR 1 232 -273 1953 113 33 50 chr4 42628280 42628581 -141660081 + AluSx SINE Alu 1 296 -16 1908 192 28 90 chr4 42628581 42628897 -141659765 + MLT1D LTR MaLR 232 503 -2 1143 168 11 112 chr4 42628897 42629003 -141659659 - LTR37A LTR ERV1 -254 172 57 234 0 0 0 chr4 42629522 42629548 -141659114 + (T)n Simple_repeat Simple_repeat 1 26 0 915 151 0 37 chr4 42629615 42629872 -141658790 - MER50 LTR ERV1 -22 712 407 1462 128 8 44 chr4 42629873 42630122 -141658540 - MER50 LTR ERV1 -492 242 3 544 323 59 25 chr4 42630161 42630571 -141658091 + MLT1K LTR MaLR 141 588 0 2354 107 3 0 chr4 42630644 42630954 -141657708 + AluSp SINE Alu 1 311 -2 1484 140 92 12 chr4 42631881 42632131 -141656531 + MER51A LTR ERV1 1 270 -364 706 196 57 6 chr4 42632160 42632318 -141656344 + MLT1B LTR MaLR 8 173 -217 1551 126 108 71 chr4 42632338 42632663 -141655999 + MER51A LTR ERV1 298 634 0 369 208 101 84 chr4 42632710 42632781 -141655881 + L1ME LINE L1 5274 5342 -822 2032 134 0 3 chr4 42632781 42633072 -141655590 + AluSg SINE Alu 1 290 -20 369 208 101 84 chr4 42633072 42633178 -141655484 + L1ME LINE L1 5342 5454 -710 226 156 22 0 chr4 42634579 42634624 -141654038 + T-rich Low_complexity Low_complexity 3 48 0 303 19 38 38 chr4 42634881 42634934 -141653728 + (TTTC)n Simple_repeat Simple_repeat 2 54 0 225 0 0 0 chr4 42636775 42636800 -141651862 + (TTG)n Simple_repeat Simple_repeat 2 26 0 242 289 33 66 chr4 42640166 42640287 -141648375 - MIR SINE MIR -46 216 100 289 303 28 0 chr4 42640559 42640668 -141647994 - MIR3 SINE MIR -53 155 44 2013 92 53 4 chr4 42640937 42641218 -141647444 - AluSx SINE Alu -10 302 8 183 80 0 0 chr4 42641221 42641246 -141647416 + (A)n Simple_repeat Simple_repeat 1 25 0 236 226 69 78 chr4 42641490 42641592 -141647070 + L3 LINE CR1 1477 1577 0 290 123 18 0 chr4 42645189 42645246 -141643416 + CT-rich Low_complexity Low_complexity 2 59 0 202 100 75 0 chr4 42647527 42647567 -141641095 + A-rich Low_complexity Low_complexity 1 43 0 2258 105 10 0 chr4 42650276 42650580 -141638082 - AluSx SINE Alu -5 307 1 397 283 0 9 chr4 42650984 42651090 -141637572 - MER5B DNA MER1_type -73 105 1 305 313 60 27 chr4 42651281 42651431 -141637231 + MIR SINE MIR 45 199 -63 323 283 9 26 chr4 42651441 42651554 -141637108 - MIR SINE MIR 0 262 152 416 251 179 17 chr4 42652923 42653102 -141635560 - MIR SINE MIR -48 214 7 2185 154 36 71 chr4 42653661 42654109 -141634553 + MSTB1 LTR MaLR 1 432 0 295 351 34 27 chr4 42656095 42656243 -141632419 - MER5A DNA MER1_type -2 187 39 1903 142 0 0 chr4 42656255 42656529 -141632133 - AluJb SINE Alu -38 274 1 576 212 28 6 chr4 42656974 42657094 -141631568 + MER5A DNA MER1_type 7 113 -65 1526 168 42 28 chr4 42657590 42657876 -141630786 + AluJo SINE Alu 1 290 -22 259 246 304 23 chr4 42657900 42658071 -141630591 - MIR SINE MIR -33 229 11 243 282 168 2 chr4 42660936 42661034 -141627628 + MIR SINE MIR 38 149 -102 459 251 134 21 chr4 42661749 42661936 -141626726 - MER3 DNA MER1_type 0 209 2 221 253 32 32 chr4 42663192 42663287 -141625375 - L2 LINE L2 -448 2866 2772 26 0 0 0 chr4 42663474 42663500 -141625162 + AT_rich Low_complexity Low_complexity 1 26 0 33 0 0 0 chr4 42663586 42663619 -141625043 + AT_rich Low_complexity Low_complexity 1 33 0 955 152 26 0 chr4 42663809 42663960 -141624702 - Tigger1 DNA MER2_type -1 2417 2263 3249 164 75 21 chr4 42663962 42664573 -141624089 - Tigger1 DNA MER2_type -1751 667 24 659 179 21 123 chr4 42666493 42666531 -141622131 - L1MD3 LINE L1 -30 7965 7925 2116 82 0 78 chr4 42666531 42666862 -141621800 - AluSc SINE Alu -4 305 1 659 179 21 123 chr4 42666862 42667058 -141621604 - L1MD3 LINE L1 -70 7925 7755 2124 90 21 0 chr4 42668567 42668869 -141619793 - AluSq SINE Alu 0 308 1 2264 107 0 28 chr4 42669262 42669579 -141619083 - AluSx SINE Alu -4 308 1 24 32 0 0 chr4 42670560 42670591 -141618071 + AT_rich Low_complexity Low_complexity 1 31 0 337 266 95 45 chr4 42671986 42672208 -141616454 - L1MC5 LINE L1 -51 7910 7678 22 35 0 0 chr4 42672743 42672772 -141615890 + AT_rich Low_complexity Low_complexity 1 29 0 810 146 15 31 chr4 42673266 42673396 -141615266 + FLAM_A SINE Alu 6 133 -9 2818 10 0 0 chr4 42674033 42674338 -141614324 + AluYa5 SINE Alu 1 305 -6 2330 86 23 0 chr4 42674569 42674871 -141613791 - AluSc SINE Alu 0 309 1 28 29 0 0 chr4 42675265 42675300 -141613362 + AT_rich Low_complexity Low_complexity 1 35 0 451 66 0 0 chr4 42675465 42675526 -141613136 - AluSc SINE Alu -10 299 239 1159 82 0 0 chr4 42675526 42675672 -141612990 - AluY SINE Alu -165 146 1 199 261 3 0 chr4 42676022 42676078 -141612584 + MIR SINE MIR 93 148 -62 546 82 35 0 chr4 42676343 42676428 -141612234 - L1PB1 LINE L1 0 6151 6064 5218 115 65 29 chr4 42676776 42677429 -141611233 + Tigger3b DNA MER2_type 1 733 -2295 1537 183 11 21 chr4 42677429 42677713 -141610949 + AluJo SINE Alu 1 281 -31 5218 115 65 29 chr4 42677713 42678230 -141610432 + Tigger3b DNA MER2_type 733 1230 -1 333 214 176 23 chr4 42678293 42678424 -141610238 + MIR SINE MIR 111 261 -1 841 108 0 64 chr4 42678439 42678596 -141610066 + THE1C LTR MaLR 1 147 -228 323 137 0 0 chr4 42678594 42678645 -141610017 + MSTA LTR MaLR 378 428 0 * 10341 102 30 33 chr4 42678645 42680230 -141608432 + THE1C-int LTR MaLR 1 1580 0 2337 110 62 6 chr4 42680230 42680585 -141608077 + THE1C LTR MaLR 1 375 0 316 213 38 0 chr4 42680863 42680943 -141607719 + MIR SINE MIR 72 154 -108 1682 161 3 24 chr4 42681090 42681388 -141607274 + AluJb SINE Alu 13 304 -8 432 0 0 0 chr4 42681673 42681721 -141606941 + (TG)n Simple_repeat Simple_repeat 1 48 0 1108 130 105 82 chr4 42681725 42682040 -141606622 - MER33 DNA MER1_type -1 323 2 970 199 4 67 chr4 42682329 42682602 -141606060 - MLT1B LTR MaLR 0 467 135 1987 134 23 23 chr4 42682617 42682967 -141605695 + THE1B LTR MaLR 15 364 0 11815 83 10 2 chr4 42682967 42684536 -141604126 + THE1B-int LTR MaLR 1 1580 0 2212 112 30 33 chr4 42684536 42684901 -141603761 + THE1B LTR MaLR 1 364 0 532 227 34 0 chr4 42684903 42685022 -141603640 - MLT1B LTR MaLR -251 123 1 1258 254 95 58 chr4 42685476 42685537 -141603125 + L2 LINE L2 2487 2544 -769 617 225 8 0 chr4 42685537 42685657 -141603005 + FLAM_A SINE Alu 2 122 -11 194 0 39 0 chr4 42685660 42685686 -141602976 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1258 254 95 58 chr4 42685686 42686411 -141602251 + L2 LINE L2 2545 3306 -7 466 310 170 31 chr4 42686416 42686864 -141601798 - LTR67 LTR ERVL -29 528 19 215 227 0 0 chr4 42687380 42687424 -141601238 + T-rich Low_complexity Low_complexity 3 46 0 786 155 174 0 chr4 42688655 42688816 -141599846 - MER20 DNA MER1_type -30 189 1 1891 79 0 56 chr4 42689148 42689209 -141599453 + L1MA1 LINE L1 6017 6080 -222 2115 129 0 0 chr4 42689209 42689519 -141599143 + AluSg SINE Alu 1 310 0 1891 79 0 56 chr4 42689519 42689760 -141598902 + L1MA1 LINE L1 6080 6302 0 228 318 47 65 chr4 42689936 42690043 -141598619 - L2 LINE L2 -35 3237 3133 804 130 45 162 chr4 42690924 42691125 -141597537 - AluJb SINE Alu -3 309 141 2205 103 0 3 chr4 42691125 42691436 -141597226 - AluY SINE Alu 0 311 2 804 130 45 162 chr4 42691436 42691481 -141597181 - AluJb SINE Alu -171 141 92 2079 77 4 7 chr4 42691784 42692057 -141596605 + AluY SINE Alu 36 307 -4 1542 188 31 0 chr4 42692061 42692353 -141596309 + AluJo SINE Alu 1 301 -11 22 0 0 0 chr4 42694061 42694083 -141594579 + AT_rich Low_complexity Low_complexity 1 22 0 648 250 117 64 chr4 42694641 42695061 -141593601 + L1ME3 LINE L1 5713 6154 -8 391 291 42 36 chr4 42695075 42695240 -141593422 - L2 LINE L2 -680 2634 2469 726 33 0 0 chr4 42695247 42695337 -141593325 - AluY SINE Alu -9 302 213 329 276 207 5 chr4 42695352 42695569 -141593093 - L2 LINE L2 -865 2449 2189 1703 209 121 48 chr4 42696037 42696706 -141591956 + L1ME3A LINE L1 5292 6009 -161 2055 183 66 5 chr4 42696733 42697155 -141591507 - LTR32 LTR ERVL 0 471 24 274 198 115 0 chr4 42697167 42697263 -141591399 + L1ME3A LINE L1 6062 6168 -2 263 300 11 22 chr4 42697833 42697923 -141590739 + MIR SINE MIR 28 116 -92 629 164 90 16 chr4 42698125 42698247 -141590415 - AluJb SINE Alu -181 131 1 1369 188 0 0 chr4 42698255 42698479 -141590183 - AluSg/x SINE Alu -4 308 85 216 329 13 0 chr4 42699263 42699339 -141589323 + L2 LINE L2 3158 3234 -79 653 248 143 23 chr4 42700453 42700719 -141587943 - L2 LINE L2 -40 3273 2976 686 162 34 0 chr4 42702451 42702568 -141586094 + FLAM_A SINE Alu 1 121 -12 1698 145 28 47 chr4 42702865 42703183 -141585479 + AluJb SINE Alu 1 312 0 21 0 0 0 chr4 42703492 42703513 -141585149 + AT_rich Low_complexity Low_complexity 1 21 0 816 149 71 160 chr4 42703857 42704207 -141584455 - MER33 DNA MER1_type -5 319 1 430 264 143 66 chr4 42704209 42704688 -141583974 + L1ME4a LINE L1 5250 5833 -288 2384 87 7 0 chr4 42704688 42704987 -141583675 + AluSq SINE Alu 1 301 -12 430 264 143 66 chr4 42704987 42705084 -141583578 + L1ME4a LINE L1 5833 5921 -200 812 106 0 0 chr4 42705503 42705607 -141583055 + AluSq SINE Alu 82 185 -128 1023 173 15 30 chr4 42705707 42705904 -141582758 + AluJb SINE Alu 96 289 -23 2186 119 0 0 chr4 42705911 42706235 -141582427 + AluSx SINE Alu 5 312 0 506 214 174 15 chr4 42706692 42706893 -141581769 - L1ME4a LINE L1 -199 5922 5690 2075 129 3 7 chr4 42707615 42707917 -141580745 - AluSg SINE Alu -8 302 2 2409 221 67 66 chr4 42708133 42709257 -141579405 + L1MC5 LINE L1 6805 7929 -32 32 26 0 0 chr4 42710558 42710597 -141578065 + AT_rich Low_complexity Low_complexity 1 39 0 550 263 158 43 chr4 42710963 42711434 -141577228 - L1MEd LINE L1 -2535 3680 3264 3969 117 46 9 chr4 42711434 42712084 -141576578 - L1PA16 LINE L1 -10 6156 5483 550 263 158 43 chr4 42712084 42712720 -141575942 - L1MEd LINE L1 -2951 3264 2446 270 264 64 0 chr4 42712791 42712916 -141575746 - L1MEd LINE L1 -4094 2302 2170 919 273 74 68 chr4 42713279 42713804 -141574858 - L1MEd LINE L1 -953 1623 1102 1895 157 30 7 chr4 42713804 42714109 -141574553 - AluJo SINE Alu 0 312 1 919 273 74 68 chr4 42714109 42714578 -141574084 - L1MEd LINE L1 -1474 1102 526 212 283 0 61 chr4 42714971 42715070 -141573592 - L2 LINE L2 0 3313 3221 2082 144 9 6 chr4 42715083 42715424 -141573238 - MER2 DNA MER2_type 0 344 3 2092 147 3 0 chr4 42715562 42715861 -141572801 + AluJb SINE Alu 1 300 -12 2214 87 0 20 chr4 42716626 42716924 -141571738 + AluY SINE Alu 1 292 -19 882 310 65 59 chr4 42716928 42717589 -141571073 + L2 LINE L2 2557 3227 -86 366 253 158 37 chr4 42717636 42717877 -141570785 - L2 LINE L2 -1052 2262 1993 25 31 0 0 chr4 42719170 42719202 -141569460 + AT_rich Low_complexity Low_complexity 1 32 0 1791 155 7 14 chr4 42719350 42719662 -141569000 + AluJb SINE Alu 1 310 0 1726 149 94 23 chr4 42720234 42720584 -141568078 - THE1C LTR MaLR 0 375 1 231 231 83 19 chr4 42721182 42721290 -141567372 + L1MEd LINE L1 1143 1257 -4862 1649 96 73 0 chr4 42721629 42721890 -141566772 - L1MA1 LINE L1 -4 6298 6019 1697 185 11 3 chr4 42722158 42722445 -141566217 + AluJo SINE Alu 3 291 -21 2856 149 27 37 chr4 42722563 42723550 -141565112 + L1MA3 LINE L1 4688 5662 -643 1322 77 0 12 chr4 42723550 42723719 -141564943 + AluSc SINE Alu 119 285 -24 4060 108 25 6 chr4 42723719 42724360 -141564302 + L1MA3 LINE L1 5652 6304 -1 23 54 0 0 chr4 42724387 42724424 -141564238 + AT_rich Low_complexity Low_complexity 1 37 0 349 281 91 8 chr4 42725076 42725197 -141563465 + MIR SINE MIR 2 132 -130 642 216 66 12 chr4 42725207 42725374 -141563288 + MIR SINE MIR 76 251 -11 350 269 52 22 chr4 42725652 42725786 -141562876 - L1ME3A LINE L1 -219 5951 5814 454 252 61 0 chr4 42725787 42725902 -141562760 + MIR SINE MIR 141 262 0 315 0 0 0 chr4 42725953 42725988 -141562674 + (TCTA)n Simple_repeat Simple_repeat 2 36 0 880 261 90 42 chr4 42725989 42726468 -141562194 - L1ME3A LINE L1 -399 5763 5259 4407 164 26 26 chr4 42726811 42728047 -141560615 - L1P3 LINE L1 -4757 1389 193 722 284 63 35 chr4 42730383 42730777 -141557885 + L1ME3A LINE L1 5359 5763 -399 222 37 0 0 chr4 42730778 42730805 -141557857 + (TAGA)n Simple_repeat Simple_repeat 2 28 0 457 252 61 0 chr4 42730856 42730971 -141557691 - MIR SINE MIR 0 262 141 338 276 52 22 chr4 42730972 42731106 -141557556 + L1ME3A LINE L1 5814 5951 -219 627 222 66 12 chr4 42731384 42731551 -141557111 - MIR SINE MIR -11 251 76 259 273 91 36 chr4 42731564 42731674 -141556988 - MIR SINE MIR -133 129 14 2001 138 3 6 chr4 42732314 42732625 -141556037 - AluJb SINE Alu -2 310 1 1729 104 112 22 chr4 42732635 42732904 -141555758 - AluSg SINE Alu -11 299 7 2070 151 21 44 chr4 42734067 42734381 -141554281 + MER6 DNA MER2_type 443 746 -119 2299 87 3 7 chr4 42734381 42734681 -141553981 - AluSp SINE Alu -14 299 1 2070 151 21 44 chr4 42734681 42734796 -141553866 + MER6 DNA MER2_type 746 862 -3 23 0 0 0 chr4 42735454 42735477 -141553185 + AT_rich Low_complexity Low_complexity 1 23 0 288 148 114 23 chr4 42735731 42735819 -141552843 - L1M4 LINE L1 -3482 2664 2569 1785 84 0 30 chr4 42735820 42736057 -141552605 - AluSq SINE Alu -13 300 71 690 61 79 61 chr4 42736057 42736171 -141552491 - AluSq/x SINE Alu -197 116 1 339 264 47 8 chr4 42736175 42736304 -141552358 - L1M4 LINE L1 -3574 2572 2439 683 211 26 31 chr4 42736459 42736641 -141552021 - MLT1E LTR MaLR 0 593 386 32 26 0 0 chr4 42738591 42738630 -141550032 + AT_rich Low_complexity Low_complexity 1 39 0 737 290 102 11 chr4 42739924 42740296 -141548366 - L1M4 LINE L1 -1997 4149 3744 473 317 0 19 chr4 42740889 42741050 -141547612 + MIR SINE MIR 15 172 -90 207 171 0 0 chr4 42741105 42741140 -141547522 + (CAT)n Simple_repeat Simple_repeat 1 35 0 33 0 0 0 chr4 42741175 42741208 -141547454 + AT_rich Low_complexity Low_complexity 1 33 0 385 140 70 53 chr4 42741826 42741940 -141546722 + MER112 DNA MER1_type 2 117 -143 1754 109 8 23 chr4 42742032 42742311 -141546351 - AluSx SINE Alu 0 313 39 185 359 39 13 chr4 42743539 42743617 -141545045 - MIR SINE MIR -103 105 26 676 267 3 41 chr4 42744019 42744311 -141544351 - AluJb SINE Alu -30 282 2 1514 178 4 4 chr4 42745106 42745370 -141543292 - AluSx SINE Alu -47 265 2 23 0 0 0 chr4 42746849 42746872 -141541790 + AT_rich Low_complexity Low_complexity 1 23 0 970 169 23 23 chr4 42747286 42747458 -141541204 + FAM SINE Alu 3 174 -1 1034 245 105 24 chr4 42747524 42747989 -141540673 - L1M4 LINE L1 -2448 3698 3196 1697 97 0 0 chr4 42748391 42748607 -141540055 + AluSg/x SINE Alu 70 285 -24 700 291 82 44 chr4 42748755 42749038 -141539624 + L1ME3A LINE L1 5427 5739 -431 2500 65 0 3 chr4 42749038 42749347 -141539315 - AluSc SINE Alu -1 308 1 700 291 82 44 chr4 42749347 42749565 -141539097 + L1ME3A LINE L1 5739 5947 -223 640 265 178 22 chr4 42750317 42750672 -141537990 - MLT1E LTR MaLR -113 429 20 336 287 33 47 chr4 42751295 42751445 -141537217 + MIR3 SINE MIR 3 150 -58 277 237 61 53 chr4 42751467 42751581 -141537081 - MIR SINE MIR -12 250 136 288 0 0 0 chr4 42751776 42751808 -141536854 + (TA)n Simple_repeat Simple_repeat 2 33 0 1060 194 0 71 chr4 42751812 42752122 -141536540 - AluSx SINE Alu -6 306 19 1242 146 25 5 chr4 42754369 42754568 -141534094 + MER3 DNA MER1_type 2 204 -5 2375 81 0 7 chr4 42754819 42755116 -141533546 + AluSp SINE Alu 1 295 -18 2221 104 10 0 chr4 42755117 42755414 -141533248 + AluSp SINE Alu 2 301 -12 1009 94 0 0 chr4 42756750 42756877 -141531785 + AluSq SINE Alu 82 208 -105 2220 91 0 7 chr4 42757038 42757323 -141531339 + AluSq SINE Alu 1 283 -30 193 277 0 0 chr4 42757407 42757454 -141531208 + MIR SINE MIR 134 180 -82 399 264 15 94 chr4 42757559 42757760 -141530902 - L2 LINE L2 -197 3116 2932 1920 153 0 0 chr4 42757785 42758072 -141530590 - AluJb SINE Alu -25 287 1 693 136 8 0 chr4 42758150 42758268 -141530394 - AluSp/q SINE Alu -4 309 191 528 253 6 99 chr4 42758418 42758580 -141530082 - MIR SINE MIR -109 153 7 277 215 100 100 chr4 42758878 42759008 -141529654 - L2 LINE L2 -4 3309 3180 2487 72 0 3 chr4 42759107 42759414 -141529248 + AluSc SINE Alu 1 306 -3 431 261 152 9 chr4 42759516 42759746 -141528916 + HAL1 LINE L1 2241 2503 -4 2323 104 0 0 chr4 42761015 42761314 -141527348 - AluSx SINE Alu -13 299 1 2378 77 0 13 chr4 42761631 42761943 -141526719 - AluY SINE Alu -3 308 1 495 200 27 0 chr4 42762228 42762338 -141526324 - MSTA LTR MaLR -315 113 1 716 201 37 0 chr4 42762338 42762472 -141526190 + FRAM SINE Alu 18 156 -20 288 180 20 0 chr4 42762779 42762829 -141525833 + Tigger5 DNA MER2_type 2273 2323 0 2030 112 27 0 chr4 42762946 42763240 -141525422 - AluSp SINE Alu -6 307 6 2413 35 48 0 chr4 42764149 42764438 -141524224 - AluY SINE Alu -8 303 1 1546 64 0 0 chr4 42765065 42765253 -141523409 + AluY SINE Alu 1 188 -123 1839 164 35 24 chr4 42767416 42767787 -141520875 - THE1C LTR MaLR 0 375 1 230 395 0 0 chr4 42767824 42767910 -141520752 - L2 LINE L2 0 3272 3187 266 179 0 0 chr4 42767917 42767956 -141520706 + AluSp SINE Alu 136 174 -129 648 73 0 0 chr4 42767957 42768039 -141520623 + FLAM_A SINE Alu 20 101 -41 526 310 56 29 chr4 42768058 42768565 -141520097 - L1MC4a LINE L1 -375 5746 5355 785 232 36 23 chr4 42768727 42768947 -141519715 - L1MC5 LINE L1 -36 7925 7703 2185 97 41 0 chr4 42769374 42769664 -141518998 - AluY SINE Alu -8 303 2 1119 173 0 0 chr4 42769673 42769841 -141518821 - FAM SINE Alu -7 168 1 7701 182 65 26 chr4 42770802 42771823 -141516839 + Cheshire DNA MER1_type 4 1119 -1301 2123 106 0 11 chr4 42771823 42772129 -141516533 - AluSc SINE Alu 0 303 1 7701 182 65 26 chr4 42772129 42772787 -141515875 + Cheshire DNA MER1_type 1119 1750 -670 3058 160 50 27 chr4 42774997 42775602 -141513060 + Cheshire DNA MER1_type 1766 2388 -32 2435 122 62 8 chr4 42775602 42776004 -141512658 - MSTA LTR MaLR -4 424 1 3058 160 50 27 chr4 42776004 42776035 -141512627 + Cheshire DNA MER1_type 2388 2417 -3 683 267 52 0 chr4 42776417 42776608 -141512054 - L1MC4 LINE L1 -1046 6996 6796 305 305 130 49 chr4 42776697 42777005 -141511657 - L1MC4a LINE L1 -1426 6382 6050 769 148 7 15 chr4 42777069 42777204 -141511458 + AluJo SINE Alu 1 134 -178 23 0 0 0 chr4 42777204 42777227 -141511435 + AT_rich Low_complexity Low_complexity 1 23 0 484 228 137 43 chr4 42777268 42777296 -141511366 - L1MC4a LINE L1 -1896 5912 5888 2286 93 0 0 chr4 42777296 42777586 -141511076 - AluY SINE Alu -21 290 1 484 228 137 43 chr4 42777586 42777768 -141510894 - L1MC4a LINE L1 -1920 5888 5682 4975 137 14 22 chr4 42777945 42778815 -141509847 - L1MB2 LINE L1 -2 6169 5307 1233 109 12 0 chr4 42778982 42779147 -141509515 - AluSq SINE Alu -146 167 1 879 281 95 61 chr4 42779274 42779716 -141508946 + L2 LINE L2 1050 1506 -1808 362 266 31 23 chr4 42779751 42779879 -141508783 + L2 LINE L2 1803 1931 -1383 258 32 0 0 chr4 42780597 42780628 -141508034 + (T)n Simple_repeat Simple_repeat 1 31 0 189 0 0 0 chr4 42781139 42781160 -141507502 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 1652 137 0 4 chr4 42781184 42781425 -141507237 - AluSq SINE Alu -73 240 1 2298 99 0 0 chr4 42782820 42783113 -141505549 - AluSc SINE Alu -16 293 1 287 250 106 50 chr4 42783441 42783601 -141505061 - L2 LINE L2 -847 2467 2299 613 269 49 66 chr4 42783729 42783915 -141504747 - L2 LINE L2 -1028 2286 2098 2053 65 34 4 chr4 42783915 42784177 -141504485 + AluY SINE Alu 37 306 -5 613 269 49 66 chr4 42784177 42784247 -141504415 - L2 LINE L2 -1216 2098 2033 2191 121 25 25 chr4 42784247 42784611 -141504051 - THE1B LTR MaLR 0 364 1 613 269 49 66 chr4 42784611 42784639 -141504023 - L2 LINE L2 -1281 2033 2006 1169 75 0 7 chr4 42784642 42784789 -141503873 - AluSc SINE Alu -14 295 150 1512 175 45 38 chr4 42784808 42785099 -141503563 + AluJo SINE Alu 1 293 -19 29495 109 12 61 chr4 42785109 42791591 -141497071 + L1PA7 LINE L1 1 6154 0 186 206 0 0 chr4 42791798 42791832 -141496830 + MIR SINE MIR 121 154 -108 1751 185 3 13 chr4 42792304 42792618 -141496044 - AluJo SINE Alu -1 311 1 259 210 49 0 chr4 42793914 42793995 -141494667 + L1MC/D LINE L1 5813 5897 -1911 1779 303 92 22 chr4 42794006 42795119 -141493543 + L1MEc LINE L1 37 1227 -5169 577 255 50 66 chr4 42795122 42795424 -141493238 + L1M4 LINE L1 3546 3842 -2304 1785 245 67 46 chr4 42795430 42796415 -141492247 + L1M4 LINE L1 4296 5301 -845 2003 201 48 39 chr4 42796627 42797126 -141491536 + L1ME2 LINE L1 5176 5693 -469 2196 97 13 23 chr4 42797126 42797436 -141491226 + AluSq SINE Alu 1 307 -6 2003 201 48 39 chr4 42797436 42797605 -141491057 + L1ME2 LINE L1 5693 5859 -303 488 217 37 63 chr4 42797645 42797784 -141490878 + L1ME2 LINE L1 5971 6105 -59 2067 125 10 10 chr4 42797784 42798087 -141490575 + AluSx SINE Alu 1 303 -9 488 217 37 63 chr4 42798087 42798136 -141490526 + L1ME2 LINE L1 6105 6154 -10 563 181 56 105 chr4 42798152 42798205 -141490457 + L1MC5 LINE L1 7608 7662 -299 2455 65 0 36 chr4 42798205 42798513 -141490149 - AluY SINE Alu -14 297 1 563 181 56 105 chr4 42798513 42798725 -141489937 + L1MC5 LINE L1 7662 7860 -101 964 77 0 0 chr4 42798754 42798871 -141489791 + AluSq/x SINE Alu 1 117 -195 24 0 0 0 chr4 42798966 42798990 -141489672 + AT_rich Low_complexity Low_complexity 1 24 0 1505 103 0 0 chr4 42799092 42799310 -141489352 - AluY SINE Alu 0 307 90 195 162 0 0 chr4 42799926 42799963 -141488699 + (TA)n Simple_repeat Simple_repeat 1 37 0 2030 119 122 15 chr4 42799999 42800327 -141488335 - THE1B LTR MaLR 0 364 2 11160 93 6 37 chr4 42800330 42801536 -141487126 - THE1B-int LTR MaLR -2 1578 436 2470 84 0 0 chr4 42801536 42801834 -141486828 + AluSc SINE Alu 1 298 -11 11160 93 6 37 chr4 42801834 42802257 -141486405 - THE1B-int LTR MaLR -1144 436 1 2098 123 85 18 chr4 42802257 42802598 -141486064 - THE1B LTR MaLR 0 364 1 227 293 13 0 chr4 42803152 42803227 -141485435 + GA-rich Low_complexity Low_complexity 1 76 0 252 254 114 70 chr4 42803498 42803797 -141484865 - L1MC/D LINE L1 -1899 5909 5598 209 231 90 82 chr4 42805585 42805719 -141482943 + MIR SINE MIR 73 207 -55 1371 215 4 0 chr4 42805737 42806002 -141482660 + MER6 DNA MER2_type 5 270 -595 192 277 247 54 chr4 42806605 42806771 -141481891 - MIR SINE MIR -14 248 51 1295 179 52 25 chr4 42807364 42807533 -141481129 - Charlie1a DNA MER1_type -1322 1439 1276 2097 121 0 33 chr4 42807533 42807840 -141480822 - AluSx SINE Alu -15 297 1 2145 100 0 42 chr4 42807843 42808153 -141480509 - AluSg SINE Alu -13 297 1 1295 179 52 25 chr4 42808153 42808394 -141480268 - Charlie1a DNA MER1_type -1486 1275 982 1558 240 101 20 chr4 42808500 42809005 -141479657 - MER77 LTR ERV1 -6 599 54 1524 197 37 12 chr4 42809024 42809793 -141478869 - Charlie1a DNA MER1_type -546 909 6 2836 10 0 0 chr4 42811052 42811362 -141477300 + AluYa5 SINE Alu 1 310 -1 22 70 0 0 chr4 42812991 42813034 -141475628 + AT_rich Low_complexity Low_complexity 1 43 0 287 229 0 97 chr4 42813590 42813734 -141474928 + FLAM_C SINE Alu 1 130 -3 234 0 0 0 chr4 42814877 42814903 -141473759 + (A)n Simple_repeat Simple_repeat 1 26 0 448 263 54 59 chr4 42814970 42815001 -141473661 - MIR SINE MIR -29 233 203 2342 67 0 7 chr4 42815001 42815299 -141473363 - AluY SINE Alu -12 299 4 448 263 54 59 chr4 42815299 42815453 -141473209 - MIR SINE MIR -59 203 49 2374 76 3 3 chr4 42815677 42815978 -141472684 - AluSc SINE Alu -8 301 1 1980 118 11 0 chr4 42816026 42816342 -141472320 - AluSg SINE Alu 0 319 1 2318 86 3 0 chr4 42816512 42816802 -141471860 + AluSg SINE Alu 1 291 -19 1442 171 84 19 chr4 42816813 42817134 -141471528 + MER2 DNA MER2_type 2 343 -1 208 210 16 16 chr4 42817286 42817348 -141471314 + (TA)n Simple_repeat Simple_repeat 2 63 0 1000 141 62 5 chr4 42817476 42817668 -141470994 - MER3 DNA MER1_type -1 208 6 2484 74 0 0 chr4 42818191 42818502 -141470160 + AluY SINE Alu 1 311 0 24 77 0 0 chr4 42818534 42818586 -141470076 + AT_rich Low_complexity Low_complexity 1 52 0 1564 216 165 66 chr4 42819272 42819646 -141469016 + L2 LINE L2 1671 2129 -1185 2102 106 40 13 chr4 42819646 42819947 -141468715 - AluSx SINE Alu -3 309 1 1564 216 165 66 chr4 42819947 42820177 -141468485 + L2 LINE L2 2129 2335 -979 246 286 0 0 chr4 42820250 42820263 -141468399 + L1ME4a LINE L1 5578 5590 -531 558 214 30 30 chr4 42820263 42820394 -141468268 + FLAM_C SINE Alu 3 133 0 246 286 0 0 chr4 42820394 42820457 -141468205 + L1ME4a LINE L1 5589 5654 -467 1853 141 0 20 chr4 42820548 42820854 -141467808 + AluJb SINE Alu 1 300 -12 280 206 262 0 chr4 42821024 42821150 -141467512 + L1ME4a LINE L1 5957 6115 -6 2146 98 0 0 chr4 42821176 42821452 -141467210 + AluSx SINE Alu 1 276 -36 315 0 0 0 chr4 42821458 42821493 -141467169 + (GAAAA)n Simple_repeat Simple_repeat 2 36 0 204 173 96 58 chr4 42821904 42821956 -141466706 - L2 LINE L2 -3 3310 3257 5641 134 47 17 chr4 42822958 42824239 -141464423 - L1MA6 LINE L1 0 6300 4977 2371 159 103 0 chr4 42824239 42824703 -141463959 - MER44D DNA MER2_type 0 705 194 1318 168 150 18 chr4 42824703 42824881 -141463781 - MER44D DNA MER2_type -2243 344 191 5779 47 5 44 chr4 42824881 42825669 -141462993 + L1PA8 LINE L1 5414 6170 -2 1318 168 150 18 chr4 42825669 42825776 -141462886 - MER44D DNA MER2_type -2396 191 21 2415 94 7 0 chr4 42825778 42826086 -141462576 + AluSg SINE Alu 1 310 0 1250 99 136 14 chr4 42826127 42826348 -141462314 - L1MA6 LINE L1 -1168 4978 4731 526 275 82 38 chr4 42826419 42826786 -141461876 + MARNA DNA Mariner 197 579 -7 412 248 195 0 chr4 42827003 42827116 -141461546 + MER5A DNA MER1_type 52 186 -3 672 247 92 30 chr4 42827299 42827452 -141461210 + L1MEc LINE L1 1066 1208 -5188 1528 185 201 19 chr4 42827452 42827879 -141460783 - MLT1D LTR MaLR 0 505 1 672 247 92 30 chr4 42827879 42828061 -141460601 + L1MEc LINE L1 1208 1422 -4974 1822 177 7 0 chr4 42828300 42828582 -141460080 + AluJo SINE Alu 3 286 -26 21 0 0 0 chr4 42828764 42828785 -141459877 + AT_rich Low_complexity Low_complexity 1 21 0 1375 207 52 41 chr4 42828985 42829153 -141459509 - MER7A DNA MER2_type -2692 346 181 1219 93 111 46 chr4 42829153 42829287 -141459375 - MER30 DNA MER1_type 0 230 75 2140 75 61 7 chr4 42829287 42829582 -141459080 - AluY SINE Alu 0 311 1 1219 93 111 46 chr4 42829582 42829663 -141458999 - MER30 DNA MER1_type -155 75 1 1375 207 52 41 chr4 42829663 42829837 -141458825 - MER7A DNA MER2_type -2857 181 2 1643 169 10 29 chr4 42829849 42830163 -141458499 - AluJo SINE Alu -4 308 1 642 231 60 0 chr4 42830684 42830801 -141457861 - FLAM_C SINE Alu -18 125 2 242 256 44 22 chr4 42830918 42831008 -141457654 + L2 LINE L2 3222 3313 0 3472 208 132 9 chr4 42831104 42832577 -141456085 - L1MB7 LINE L1 -237 5947 4268 1889 153 0 19 chr4 42832577 42832890 -141455772 - AluJb SINE Alu -5 307 1 3472 208 132 9 chr4 42832890 42832921 -141455741 - L1MB7 LINE L1 -1916 4268 4242 1931 138 45 3 chr4 42833080 42833371 -141455291 + AluJb SINE Alu 3 305 -7 510 194 48 8 chr4 42835293 42835417 -141453245 + MIR SINE MIR 121 249 -13 252 287 28 19 chr4 42842102 42842210 -141446452 + MER5A DNA MER1_type 81 189 0 258 282 83 59 chr4 42844521 42844648 -141444014 + MIR SINE MIR 31 157 -51 408 262 48 8 chr4 42845412 42845538 -141443124 + L2 LINE L2 3181 3311 -2 184 184 41 20 chr4 42845559 42845608 -141443054 + L2 LINE L2 3223 3272 0 1911 132 18 4 chr4 42896626 42896906 -141391756 - AluSx SINE Alu -11 301 18 1358 170 25 0 chr4 42897467 42897702 -141390960 - MER58B DNA MER1_type 0 341 101 262 133 0 83 chr4 42897681 42897741 -141390921 - AluSc SINE Alu 0 299 245 * 471 159 46 113 chr4 42900182 42900377 -141388285 - L1MC4 LINE L1 -1 8041 7860 2133 93 0 35 chr4 42900425 42900714 -141387948 + AluSq SINE Alu 23 301 -12 2255 136 0 63 chr4 42900848 42901245 -141387417 + pTR5 LTR ERV1 1661 2032 -406 302 253 11 0 chr4 42901246 42901337 -141387325 + LTR30 LTR ERV1 552 643 -79 1317 114 87 14 chr4 42901337 42901556 -141387106 + LTR12 LTR ERV1 480 714 0 317 273 70 56 chr4 42901558 42901671 -141386991 + MER110A LTR ERV1 217 331 -137 2449 154 100 34 chr4 42901671 42902247 -141386415 + MER4B LTR ERV1 1 779 0 477 286 100 45 chr4 42902646 42903118 -141385544 + L2 LINE L2 1682 2179 -1135 575 150 35 9 chr4 42903130 42903243 -141385419 - MER33 DNA MER1_type -2 361 246 2842 131 63 4 chr4 42903313 42903766 -141384896 - LTR12 LTR ERV1 -133 581 31 1923 128 13 10 chr4 42904523 42904821 -141383841 - AluSx SINE Alu -8 304 6 240 307 11 11 chr4 42904833 42904921 -141383741 - MIR SINE MIR -12 250 163 2152 101 3 7 chr4 42905494 42905780 -141382882 - AluSg SINE Alu -25 285 1 936 140 6 11 chr4 42905788 42905967 -141382695 + CT-rich Low_complexity Low_complexity 3 180 0 1870 119 0 79 chr4 42905992 42906005 -141382657 - AluJo SINE Alu -15 297 285 895 113 0 13 chr4 42906005 42906155 -141382507 + (TTCC)n Simple_repeat Simple_repeat 3 150 0 1870 119 0 79 chr4 42906155 42906459 -141382203 - AluJo SINE Alu -27 285 5 608 240 16 0 chr4 42907124 42907253 -141381409 + MER58 DNA MER1_type 1 131 -210 972 103 0 0 chr4 42907254 42907380 -141381282 + AluSq/x SINE Alu 1 126 -187 1818 153 0 39 chr4 42907527 42907834 -141380828 + AluJb SINE Alu 9 303 -9 287 116 0 0 chr4 42907835 42907878 -141380784 + L1MC/D LINE L1 5422 5464 -702 383 190 21 21 chr4 42907896 42908135 -141380527 + GA-rich Low_complexity Low_complexity 1 239 0 268 122 24 0 chr4 42908264 42908305 -141380357 + L1MC/D LINE L1 5550 5591 -2404 2347 108 0 9 chr4 42908326 42908642 -141380020 + AluSq SINE Alu 1 313 0 298 339 96 0 chr4 42909408 42909523 -141379139 + L2 LINE L2 3147 3272 0 277 359 54 19 chr4 42909518 42909889 -141378773 - L2 LINE L2 -965 2349 1966 * 1537 184 18 0 chr4 42910575 42910852 -141377810 - AluSx SINE Alu -30 282 1 1253 198 44 76 chr4 42911912 42911996 -141376666 - L1ME3A LINE L1 -1 6169 6084 2447 73 0 16 chr4 42911996 42912312 -141376350 + AluY SINE Alu 1 311 0 1253 198 44 76 chr4 42912312 42912353 -141376309 - L1ME3A LINE L1 -86 6084 6043 2399 113 0 0 chr4 42912353 42912663 -141375999 + AluSx SINE Alu 1 310 -2 1253 198 44 76 chr4 42912663 42912919 -141375743 - L1ME3A LINE L1 -127 6043 5799 21 0 0 0 chr4 42913692 42913713 -141374949 + AT_rich Low_complexity Low_complexity 1 21 0 390 252 153 0 chr4 42915134 42915245 -141373417 - L2 LINE L2 -1 3271 3144 1598 94 14 0 chr4 42915423 42915635 -141373027 - AluSp SINE Alu -98 215 1 374 251 51 42 chr4 42915640 42915855 -141372807 - L1MEd LINE L1 -5244 875 659 249 333 0 19 chr4 42916384 42916492 -141372170 + L2 LINE L2 2696 2801 -513 3324 128 4 0 chr4 42916517 42917035 -141371627 + LOR1a LTR ERV1 1 497 0 1792 210 10 27 chr4 42918635 42919115 -141369547 + L1M4 LINE L1 4920 5391 -755 5361 95 24 62 chr4 42919239 42920174 -141368488 - BaEV-int LTR ERV1 -5478 1418 711 258 187 132 77 chr4 42920206 42920297 -141368365 - BaEV-int LTR ERV1 -5579 1070 975 1473 129 194 217 chr4 42920403 42921445 -141367217 + LTR12 LTR ERV1 1 579 -135 1898 102 4 19 chr4 42921579 42921845 -141366817 + AluSc SINE Alu 36 297 -12 806 239 117 4 chr4 42921849 42922079 -141366583 + MIR SINE MIR 2 257 -5 392 176 35 0 chr4 42922159 42922244 -141366418 + L1MA5A LINE L1 6205 6292 -5 2014 114 32 11 chr4 42922375 42922656 -141366006 + AluSx SINE Alu 1 287 -25 2049 143 10 0 chr4 42922962 42923263 -141365399 + AluJb SINE Alu 7 310 -2 730 160 29 28 chr4 42923292 42923584 -141365078 + GA-rich Low_complexity Low_complexity 1 292 0 327 307 71 8 chr4 42923938 42924065 -141364597 - MIR3 SINE MIR -54 154 20 369 280 24 8 chr4 42924120 42924227 -141364435 + MLT1D LTR MaLR 1 112 -393 1973 171 35 22 chr4 42924227 42924596 -141364066 - MLT1A2 LTR MaLR 0 374 1 369 280 24 8 chr4 42924596 42924613 -141364049 + MLT1D LTR MaLR 112 127 -378 1671 182 11 0 chr4 42924971 42925251 -141363411 - AluJb SINE Alu -21 291 9 568 244 55 6 chr4 42927075 42927239 -141361423 + MER104 DNA Tc2 1 172 -8 550 269 0 48 chr4 42927825 42928033 -141360629 - MIR SINE MIR -62 200 3 485 149 35 0 chr4 42928497 42928611 -141360051 + (TG)n Simple_repeat Simple_repeat 2 119 0 1292 179 9 0 chr4 42929288 42929512 -141359150 - MLT1D LTR MaLR -2 503 278 270 276 141 12 chr4 42930278 42930441 -141358221 - MIR SINE MIR -12 250 67 370 242 67 33 chr4 42930623 42930743 -141357919 - MIR SINE MIR -114 148 25 506 298 43 75 chr4 42932260 42932515 -141356147 - MIR SINE MIR -12 250 4 2226 53 27 30 chr4 42932637 42932936 -141355726 - AluY SINE Alu -11 300 3 2159 70 6 32 chr4 42932945 42933261 -141355401 - AluY SINE Alu 0 311 4 1528 177 14 24 chr4 42934297 42934591 -141354071 + AluJo SINE Alu 1 291 -21 281 295 74 34 chr4 42934593 42934742 -141353920 - L2 LINE L2 -16 3297 3143 956 149 0 0 chr4 42934846 42934994 -141353668 - pTR5 LTR ERV1 -939 1499 1352 370 225 99 0 chr4 42935205 42935316 -141353346 - pTR5 LTR ERV1 -1574 864 743 1481 156 0 0 chr4 42935326 42935557 -141353105 - AluJb SINE Alu -81 231 1 759 149 55 81 chr4 42935557 42935660 -141353002 - MER33 DNA MER1_type -2356 229 125 2013 84 18 3 chr4 42935660 42935946 -141352716 - AluSg SINE Alu -20 290 1 759 149 55 81 chr4 42935946 42936077 -141352585 - MER33 DNA MER1_type -2460 125 1 790 259 255 18 chr4 42936090 42936537 -141352125 + L2 LINE L2 2191 2743 -571 698 142 9 0 chr4 42936548 42936654 -141352008 + FLAM_A SINE Alu 1 107 -35 201 350 10 31 chr4 42936756 42936853 -141351809 + L2 LINE L2 2800 2894 -420 2381 78 3 0 chr4 42936860 42937168 -141351494 - AluSc SINE Alu 0 309 1 537 245 68 80 chr4 42937227 42937464 -141351198 + L2 LINE L2 3078 3311 -2 25 0 0 0 chr4 42937477 42937502 -141351160 + AT_rich Low_complexity Low_complexity 1 25 0 306 295 85 20 chr4 42938528 42938728 -141349934 + L2 LINE L2 2836 3048 -224 243 356 96 9 chr4 42938873 42938988 -141349674 + L2 LINE L2 3136 3260 -12 198 71 0 0 chr4 42938991 42939019 -141349643 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 996 144 12 0 chr4 42939464 42939631 -141349031 - L1MA5 LINE L1 -6 6294 6126 933 219 184 72 chr4 42940087 42940517 -141348145 - MLT1J LTR MaLR -7 504 27 215 189 0 0 chr4 42940536 42940573 -141348089 - MER5A DNA MER1_type -19 170 134 1017 123 0 43 chr4 42940573 42940735 -141347927 - Tigger7 DNA MER2_type 0 2487 2333 1679 129 16 55 chr4 42940838 42941148 -141347514 - pTR5 LTR ERV1 -932 1506 1209 253 346 0 0 chr4 42941150 42941231 -141347431 + G-rich Low_complexity Low_complexity 1 81 0 2085 184 17 28 chr4 42941233 42941694 -141346968 - pTR5 LTR ERV1 -1240 1198 743 1520 47 11 5 chr4 42941694 42941885 -141346777 + AluY SINE Alu 108 299 -12 1516 102 74 5 chr4 42941890 42942105 -141346557 - MER30 DNA MER1_type 0 230 1 419 290 6 56 chr4 42942105 42942267 -141346395 + MER5B DNA MER1_type 25 178 0 352 337 57 29 chr4 42942278 42942453 -141346209 - MER5A DNA MER1_type -3 186 7 1813 124 53 3 chr4 42942741 42943024 -141345638 - AluSx SINE Alu -15 297 1 2163 93 0 31 chr4 42943480 42943801 -141344861 - AluSx SINE Alu -1 311 1 582 211 16 8 chr4 42943899 42944027 -141344635 - L1MC1 LINE L1 -6 6327 6199 1527 175 26 72 chr4 42944027 42944376 -141344286 + MER41C LTR ERV1 9 341 -213 1526 197 37 53 chr4 42944369 42944744 -141343918 + MER41C LTR ERV1 186 554 0 * 4292 133 33 46 chr4 42944744 42945532 -141343130 - L1MC1 LINE L1 -123 6210 5433 806 158 105 57 chr4 42945635 42945844 -141342818 - Tigger7 DNA MER2_type -119 2372 2 507 272 40 0 chr4 42945844 42945969 -141342693 - MER5A DNA MER1_type -53 136 7 1795 155 0 20 chr4 42946003 42946334 -141342328 - AluSx SINE Alu 0 312 1 2142 82 0 4 chr4 42947529 42947839 -141340823 + AluSp SINE Alu 5 313 0 823 163 0 0 chr4 42947840 42947963 -141340699 - AluJo/FLAM SINE Alu -179 123 1 252 304 78 17 chr4 42948076 42948191 -141340471 - MIR3 SINE MIR -1 207 86 1722 131 7 52 chr4 42948232 42948538 -141340124 - AluJb SINE Alu -20 292 1 2222 67 0 67 chr4 42948646 42948974 -141339688 - AluY SINE Alu -5 306 1 205 344 21 32 chr4 42949004 42949097 -141339565 - L2 LINE L2 -31 3241 3150 1284 191 78 28 chr4 42949458 42949740 -141338922 - MLT1B LTR MaLR -2 388 93 187 89 0 67 chr4 42952757 42952802 -141335860 + (GAAA)n Simple_repeat Simple_repeat 3 44 0 2346 97 0 0 chr4 42952942 42953251 -141335411 - AluSx SINE Alu -3 309 1 1097 145 16 16 chr4 42953307 42953493 -141335169 + AluJb SINE Alu 1 186 -126 11730 58 11 2 chr4 42953593 42955016 -141333646 - HERV17 LTR ERV1 -4761 3865 2430 2778 71 0 0 chr4 42955001 42955337 -141333325 - HERV17 LTR ERV1 -6612 2014 1679 * 14311 67 31 7 chr4 42955334 42957154 -141331508 - HERV17 LTR ERV1 -6762 1864 1 1885 80 88 0 chr4 42957154 42957404 -141331258 - LTR17 LTR ERV1 0 780 509 2425 70 3 0 chr4 42957504 42957805 -141330857 - LTR17 LTR ERV1 -478 302 1 314 256 168 8 chr4 42957824 42957949 -141330713 + MER110 LTR ERV1 346 490 -1 4135 92 16 2 chr4 42957980 42958526 -141330136 + MER41A LTR ERV1 1 554 0 2326 84 0 7 chr4 42960158 42960466 -141328196 - AluSq SINE Alu -7 306 1 326 167 14 0 chr4 42960732 42960738 -141327924 + (TA)n Simple_repeat Simple_repeat 1 5 -68 2210 63 18 0 chr4 42960738 42961024 -141327638 + AluY SINE Alu 1 291 -20 326 167 14 0 chr4 42961024 42961089 -141327573 + (TA)n Simple_repeat Simple_repeat 5 73 0 241 326 130 0 chr4 42961121 42961213 -141327449 - L2 LINE L2 0 3313 3210 298 319 243 0 chr4 42961657 42961801 -141326861 + MER91A DNA MER1_type 1 179 -17 1930 131 13 3 chr4 42961959 42962257 -141326405 + AluJo SINE Alu 11 311 -1 2325 101 0 0 chr4 42962268 42962576 -141326086 + AluSp SINE Alu 1 308 -5 682 186 0 0 chr4 42962588 42962706 -141325956 + FLAM_C SINE Alu 2 119 -24 294 29 0 0 chr4 42962709 42962744 -141325918 + (TAA)n Simple_repeat Simple_repeat 2 36 0 250 298 0 0 chr4 42963260 42963317 -141325345 - MER113 DNA MER1_type? -7 514 458 28 48 0 0 chr4 42963349 42963391 -141325271 + AT_rich Low_complexity Low_complexity 1 42 0 1985 148 0 0 chr4 42963459 42963762 -141324900 - AluSx SINE Alu -9 303 1 240 260 167 0 chr4 42963782 42963878 -141324784 - MER113 DNA MER1_type? -399 122 11 207 226 0 19 chr4 42963986 42964039 -141324623 + GA-rich Low_complexity Low_complexity 1 52 0 1684 189 0 10 chr4 42964451 42964752 -141323910 + AluJo SINE Alu 1 298 -14 688 124 86 0 chr4 42964767 42964872 -141323790 - MER21B LTR ERV1 -161 702 589 723 188 12 12 chr4 42964872 42965118 -141323544 + CT-rich Low_complexity Low_complexity 1 246 0 1998 118 0 53 chr4 42965118 42965439 -141323223 - AluSg SINE Alu -4 306 3 593 213 14 21 chr4 42965441 42965581 -141323081 - MER21B LTR ERV1 -259 604 466 1842 143 272 57 chr4 42965581 42966229 -141322433 - LTR48 LTR ERV1 0 787 1 * 2234 209 13 26 chr4 42966229 42966692 -141321970 - MER21B LTR ERV1 -406 457 1 588 296 206 26 chr4 42967165 42967587 -141321075 - LTR33 LTR ERVL -4 517 20 475 125 0 14 chr4 42967704 42967776 -141320886 - MLT1B LTR MaLR -292 98 28 390 169 0 52 chr4 42967776 42967853 -141320809 - MLT1B LTR MaLR -317 73 1 2175 97 0 10 chr4 42967926 42968224 -141320438 + AluSq SINE Alu 1 295 -18 991 206 0 29 chr4 42968353 42968562 -141320100 + L1MB7 LINE L1 5626 5828 -356 7196 179 41 13 chr4 42968567 42969912 -141318750 - MER52A LTR ERV1 0 1755 374 602 186 18 54 chr4 42969910 42970077 -141318585 - MER52A LTR ERV1 -1594 161 1 * 1279 239 24 0 chr4 42970083 42970380 -141318282 + L1MB7 LINE L1 5869 6172 -12 343 302 19 88 chr4 42970647 42970862 -141317800 - MIR3 SINE MIR -6 202 3 320 216 16 80 chr4 42970865 42970990 -141317672 + MIR SINE MIR 103 219 -43 574 284 107 69 chr4 42971890 42972142 -141316520 - L1M4 LINE L1 -871 5275 5034 1582 156 33 29 chr4 42972142 42972449 -141316213 - AluJo SINE Alu -4 308 1 574 284 107 69 chr4 42972449 42973048 -141315614 - L1M4 LINE L1 -1112 5034 4392 282 313 12 12 chr4 42973644 42973727 -141314935 + L2 LINE L2 3001 3083 -189 2197 117 98 3 chr4 42973911 42974279 -141314383 + MER57A LTR ERV1 1 403 0 1117 185 118 85 chr4 42974302 42974692 -141313970 + MER57A LTR ERV1 1 403 0 1806 125 6 44 chr4 42974698 42975017 -141313645 - AluSx SINE Alu -5 307 1 826 218 103 16 chr4 42975025 42975268 -141313394 + MER110A LTR ERV1 27 290 -178 5746 77 1 6 chr4 42975268 42976007 -141312655 - LTR17 LTR ERV1 0 780 1 2211 83 10 3 chr4 42976007 42976297 -141312365 - HERV17 LTR ERV1 0 8626 8335 306 51 0 0 chr4 42976287 42976326 -141312336 - HERV17 LTR ERV1 -1078 7548 7510 * 16328 41 11 0 chr4 42976319 42978210 -141310452 - HERV17 LTR ERV1 -2607 6019 4108 212 259 86 0 chr4 42978369 42978427 -141310235 + L2 LINE L2 3250 3312 -1 595 0 13 13 chr4 42979292 42979368 -141309294 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 2080 113 0 3 chr4 42979371 42979672 -141308990 - AluY SINE Alu -11 300 1 223 111 0 44 chr4 42979672 42979717 -141308945 + (TCTA)n Simple_repeat Simple_repeat 1 43 0 4360 85 59 69 chr4 42979973 42980203 -141308459 - LTR12 LTR ERV1 0 688 457 2328 57 17 0 chr4 42980203 42980499 -141308163 + AluY SINE Alu 1 301 -10 4360 85 59 69 chr4 42980499 42980963 -141307699 - LTR12 LTR ERV1 -231 457 1 1229 138 177 53 chr4 42981584 42981867 -141306795 - MLT1D LTR MaLR -2 503 186 2603 112 10 8 chr4 42981867 42982251 -141306411 + LOR1a LTR ERV1 1 385 -112 1128 115 0 0 chr4 42982276 42982424 -141306238 + LOR1a LTR ERV1 350 497 0 1269 123 73 5 chr4 42982434 42982638 -141306024 - MLT1D LTR MaLR -287 218 1 605 274 193 25 chr4 42982726 42983291 -141305371 - L1ME3A LINE L1 -218 5935 5276 22 0 0 0 chr4 42983349 42983371 -141305291 + AT_rich Low_complexity Low_complexity 1 22 0 225 221 71 94 chr4 42983864 42983991 -141304671 - L1P LINE L1 -1133 5013 4890 500 294 52 72 chr4 42984041 42984143 -141304519 - L1ME3A LINE L1 -3393 2736 2633 1476 94 39 13 chr4 42984143 42984377 -141304285 - L1MA8 LINE L1 -5 6286 6047 500 294 52 72 chr4 42984377 42984910 -141303752 - L1ME3A LINE L1 -3496 2633 2114 1478 171 0 12 chr4 42984915 42985166 -141303496 - AluSx SINE Alu -64 248 1 739 277 29 55 chr4 42985425 42985693 -141302969 - L1MEd LINE L1 -4729 1581 1307 2405 98 0 0 chr4 42985693 42985999 -141302663 - AluSx SINE Alu -6 306 1 739 277 29 55 chr4 42985999 42986270 -141302392 - L1MEd LINE L1 -5003 1307 1016 2027 149 7 3 chr4 42986270 42986572 -141302090 + AluJb SINE Alu 1 303 -9 739 277 29 55 chr4 42986572 42986685 -141301977 - L1MEd LINE L1 -5294 1016 902 10319 100 6 66 chr4 42986785 42986867 -141301795 + Tigger1 DNA MER2_type 865 950 -1468 2352 92 20 0 chr4 42986867 42987172 -141301490 + AluSx SINE Alu 1 311 -1 10319 100 6 66 chr4 42987172 42987709 -141300953 + Tigger1 DNA MER2_type 950 1518 -900 2240 108 3 0 chr4 42987709 42988006 -141300656 + AluSg SINE Alu 1 298 -12 10319 100 6 66 chr4 42988006 42988596 -141300066 + Tigger1 DNA MER2_type 1518 2142 -276 2169 116 3 0 chr4 42988596 42988899 -141299763 - AluSg SINE Alu -6 304 1 10319 100 6 66 chr4 42988899 42989088 -141299574 + Tigger1 DNA MER2_type 2142 2154 -264 2249 107 3 3 chr4 42989088 42989387 -141299275 - AluSq SINE Alu -14 299 1 10319 100 6 66 chr4 42989387 42989638 -141299024 + Tigger1 DNA MER2_type 2154 2418 0 687 220 0 75 chr4 42989638 42989694 -141298968 - MER33 DNA MER1_type -2387 198 139 2058 119 0 7 chr4 42989694 42989987 -141298675 + AluSx SINE Alu 1 291 -21 687 220 0 75 chr4 42989987 42990130 -141298532 - MER33 DNA MER1_type -2446 139 14 320 335 38 29 chr4 42990165 42990374 -141298288 + L2 LINE L2 2513 2723 -591 488 263 15 29 chr4 42990653 42990790 -141297872 + L2 LINE L2 3136 3270 -2 192 267 187 0 chr4 42991276 42991351 -141297311 - L2 LINE L2 -10 3262 3174 353 345 35 0 chr4 42991978 42992149 -141296513 - MLT1I LTR MaLR -232 177 1 232 343 0 0 chr4 42992160 42992227 -141296435 - L2 LINE L2 -978 2336 2270 432 260 16 16 chr4 42992233 42992356 -141296306 - MER5A DNA MER1_type -7 182 60 228 302 43 58 chr4 42992249 42992388 -141296274 + MER5A DNA MER1_type 35 171 -18 * 526 257 150 81 chr4 42992436 42992623 -141296039 - L2 LINE L2 -1216 2098 1925 2244 85 0 0 chr4 42992623 42992904 -141295758 - AluSg SINE Alu -29 281 1 526 257 150 81 chr4 42992904 42993089 -141295573 - L2 LINE L2 -1389 1925 1754 1300 45 13 0 chr4 42993089 42993246 -141295416 - L1PA4 LINE L1 -1 6154 5996 526 257 150 81 chr4 42993246 42993440 -141295222 - L2 LINE L2 -1560 1754 1492 603 205 20 46 chr4 42993457 42993608 -141295054 - MER5B DNA MER1_type -17 161 15 282 338 76 40 chr4 42993663 42993861 -141294801 + L2 LINE L2 3008 3212 -60 2435 70 0 7 chr4 42994183 42994484 -141294178 + AluY SINE Alu 1 299 -12 1263 121 0 0 chr4 42994484 42994658 -141294004 + AluSg/x SINE Alu 132 305 -5 489 261 0 17 chr4 42994954 42995069 -141293593 - MER58B DNA MER1_type -35 306 194 1426 203 92 45 chr4 42995069 42995634 -141293028 - MLT1E1 LTR MaLR 0 593 1 658 205 19 68 chr4 42995637 42995842 -141292820 - MER58B DNA MER1_type -146 195 1 2407 83 3 0 chr4 42996627 42996927 -141291735 + AluSq SINE Alu 1 301 -12 542 301 116 14 chr4 42996929 42997145 -141291517 - MIR SINE MIR -22 240 3 1614 159 50 25 chr4 42997504 42997691 -141290971 - AluJb SINE Alu 0 312 117 405 0 0 0 chr4 42997691 42997736 -141290926 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 1614 159 50 25 chr4 42997736 42997850 -141290812 - AluJb SINE Alu -195 117 7 263 286 0 16 chr4 42997962 42998025 -141290637 + L2 LINE L2 3246 3307 -6 606 136 52 97 chr4 42998072 42998168 -141290494 - MER69 DNA AcHobo -1 2525 2437 1737 185 0 19 chr4 42998168 42998482 -141290180 + AluJo SINE Alu 1 308 -4 606 136 52 97 chr4 42998482 42998539 -141290123 - MER69 DNA AcHobo -89 2437 2379 432 175 0 52 chr4 42998540 42998637 -141290025 - L1MA9 LINE L1 0 6312 6221 520 289 96 70 chr4 42998652 42998964 -141289698 + L2 LINE L2 2953 3272 0 1669 99 13 4 chr4 42999117 42999350 -141289312 + AluSx SINE Alu 1 235 -77 2241 124 0 0 chr4 42999877 43000184 -141288478 - AluSq SINE Alu -6 307 1 2323 110 0 0 chr4 43000759 43001067 -141287595 - AluSx SINE Alu -4 308 1 1947 103 44 0 chr4 43001498 43001770 -141286892 + AluY SINE Alu 1 284 -27 352 258 101 0 chr4 43001899 43001988 -141286674 + MIR SINE MIR 43 140 -122 285 351 37 11 chr4 43002187 43002375 -141286287 - MER117 DNA MER1_type -1 196 4 1133 184 109 141 chr4 43002437 43002970 -141285692 - LTR49 LTR ERV1 -50 545 30 276 156 21 10 chr4 43002970 43003066 -141285596 + (TA)n Simple_repeat Simple_repeat 2 98 0 1916 117 0 8 chr4 43003066 43003322 -141285340 - AluSx SINE Alu -21 291 38 613 219 126 27 chr4 43003363 43003546 -141285116 - MIR SINE MIR -28 234 34 514 108 0 14 chr4 43003670 43003744 -141284918 - MER34 LTR ERV1 0 542 470 747 186 0 8 chr4 43003744 43003873 -141284789 + FRAM SINE Alu 47 174 -2 1105 222 74 28 chr4 43003876 43004043 -141284619 - MER34 LTR ERV1 -55 487 300 2285 101 0 7 chr4 43004043 43004341 -141284321 + AluSg SINE Alu 6 301 -9 1105 222 74 28 chr4 43004341 43004456 -141284206 - MER34 LTR ERV1 -242 300 192 268 61 0 0 chr4 43004456 43004489 -141284173 + MER34B LTR ERV1 1 33 -532 * 1358 177 30 97 chr4 43004460 43004821 -141283841 + LTR49 LTR ERV1 5 341 -254 490 171 63 9 chr4 43004871 43004982 -141283680 + LTR48 LTR ERV1 614 730 -57 820 139 0 56 chr4 43004982 43005126 -141283536 - FLAM_C SINE Alu -7 136 1 515 216 37 45 chr4 43005179 43005313 -141283349 - MER34 LTR ERV1 -332 210 78 851 120 165 0 chr4 43005313 43005446 -141283216 + AluSg/x SINE Alu 152 306 -6 404 153 0 0 chr4 43005446 43005505 -141283157 - MER34 LTR ERV1 -471 71 13 370 282 48 8 chr4 43006514 43006638 -141282024 - L2 LINE L2 -3 3269 3141 1179 108 0 0 chr4 43006712 43006869 -141281793 + AluSc SINE Alu 1 157 -152 216 0 0 0 chr4 43006874 43006898 -141281764 + (A)n Simple_repeat Simple_repeat 1 24 0 1965 143 23 0 chr4 43006953 43007253 -141281409 - AluSx SINE Alu -5 307 1 918 112 0 22 chr4 43007780 43007914 -141280748 - AluSx SINE Alu -18 294 164 589 157 0 0 chr4 43007914 43007997 -141280665 - AluSx SINE Alu -229 83 1 10123 32 6 0 chr4 43008357 43010286 -141278376 + L1PA4 LINE L1 4234 6171 0 219 293 43 86 chr4 43010288 43010544 -141278118 - L2 LINE L2 -213 3059 2815 204 231 0 19 chr4 43010967 43011019 -141277643 + (TGAA)n Simple_repeat Simple_repeat 1 51 0 192 298 0 0 chr4 43011118 43011165 -141277497 + L2 LINE L2 2608 2654 -660 327 239 73 9 chr4 43012930 43013039 -141275623 - MIR SINE MIR -66 196 81 508 241 57 71 chr4 43014097 43014309 -141274353 - MER112 DNA MER1_type -1 259 51 2143 95 3 26 chr4 43014380 43014684 -141273978 + AluSx SINE Alu 1 297 -15 187 240 100 0 chr4 43014751 43014801 -141273861 - L2 LINE L2 -1 3271 3217 2367 251 27 6 chr4 43015067 43015594 -141273068 + MLT1H1 LTR MaLR 18 555 0 23 0 0 0 chr4 43015767 43015790 -141272872 + AT_rich Low_complexity Low_complexity 1 23 0 310 257 229 0 chr4 43015833 43015942 -141272720 - MER94 DNA DNA 0 134 1 654 243 60 16 chr4 43016346 43016531 -141272131 + MIR SINE MIR 12 204 -58 277 287 324 7 chr4 43016783 43016919 -141271743 + MER91A DNA MER1_type 4 182 -14 261 0 0 0 chr4 43017176 43017205 -141271457 + (TG)n Simple_repeat Simple_repeat 1 29 0 817 238 63 40 chr4 43017271 43017523 -141271139 - MIR SINE MIR -2 260 3 303 256 96 8 chr4 43018363 43018488 -141270174 + L1ME4a LINE L1 5927 6062 -59 2420 84 0 0 chr4 43018824 43019122 -141269540 - AluSx SINE Alu -13 299 2 744 117 27 9 chr4 43019397 43019508 -141269154 - FRAM SINE Alu -16 160 48 237 224 0 0 chr4 43019512 43019570 -141269092 + (TA)n Simple_repeat Simple_repeat 1 58 0 242 114 0 0 chr4 43019572 43019607 -141269055 - L1MC4 LINE L1 -144 7898 7864 1354 157 83 12 chr4 43019861 43020103 -141268559 - AluJo SINE Alu -53 259 1 2065 122 0 16 chr4 43020110 43020414 -141268248 - AluSx SINE Alu -13 299 1 4846 94 30 5 chr4 43021313 43021941 -141266721 - LTR9B LTR ERV1 0 644 1 554 282 103 54 chr4 43021944 43022373 -141266289 - LTR33 LTR ERVL -1 520 71 1429 160 29 0 chr4 43022387 43022625 -141266037 + L1MC/D LINE L1 5488 5732 -612 483 310 38 22 chr4 43022704 43022888 -141265774 + L2 LINE L2 2588 2774 -540 21 36 0 0 chr4 43023155 43023183 -141265479 + AT_rich Low_complexity Low_complexity 1 28 0 4832 140 48 26 chr4 43023202 43023330 -141265332 - L1MC2 LINE L1 -18 6326 6202 2022 191 93 30 chr4 43023330 43023791 -141264871 - LTR2B LTR ERV1 0 490 1 4832 140 48 26 chr4 43023791 43024518 -141264144 - L1MC2 LINE L1 -142 6202 5452 1798 198 65 72 chr4 43024518 43025070 -141263592 + LTR10A LTR ERV1 1 548 -61 873 226 81 103 chr4 43025079 43025622 -141263040 + LTR10A-int LTR ERV1 1 531 -6118 733 42 53 0 chr4 43025793 43025888 -141262774 + LTR10A-int LTR ERV1 1621 1720 -5176 359 226 167 0 chr4 43025890 43025974 -141262688 - LTR8 LTR ERV1 -438 253 156 11803 156 12 19 chr4 43025975 43029123 -141259539 + Harlequin LTR ERV1 1806 6623 -26 1867 163 152 40 chr4 43029152 43029609 -141259053 + LTR10A LTR ERV1 1 570 -39 2457 68 3 10 chr4 43029609 43029919 -141258743 - AluY SINE Alu -3 308 1 1867 163 152 40 chr4 43029919 43029964 -141258698 + LTR10A LTR ERV1 570 609 0 495 128 0 32 chr4 43029964 43030058 -141258604 - L1MC2 LINE L1 -2587 5455 5365 347 285 92 40 chr4 43030112 43030458 -141258204 - MLT1H LTR MaLR 0 549 114 284 220 0 0 chr4 43030743 43030802 -141257860 - MLT1I LTR MaLR -269 140 82 1247 257 88 14 chr4 43031300 43031791 -141256871 + Charlie2a DNA MER1_type 1628 2154 -708 729 103 206 0 chr4 43031817 43031943 -141256719 - L1PA10 LINE L1 0 6168 6017 295 329 60 20 chr4 43032125 43032274 -141256388 - MER5A DNA MER1_type 0 189 35 * 659 262 20 0 chr4 43032142 43032291 -141256371 + MER5A DNA MER1_type 32 183 -6 479 250 60 49 chr4 43032834 43033169 -141255493 - MLT1H LTR MaLR -7 542 123 258 279 29 0 chr4 43033345 43033413 -141255249 + L2 LINE L2 3242 3311 -2 7245 47 10 0 chr4 43033499 43034772 -141253890 + L1PA6 LINE L1 4868 6149 -5 281 216 11 0 chr4 43035438 43035526 -141253136 + GA-rich Low_complexity Low_complexity 3 91 0 760 94 28 33 chr4 43035545 43035725 -141252937 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 287 232 12 0 chr4 43035749 43035831 -141252831 + GA-rich Low_complexity Low_complexity 3 85 0 2392 92 10 0 chr4 43035934 43036238 -141252424 + AluSx SINE Alu 1 307 -5 518 244 90 6 chr4 43037035 43037253 -141251409 - MIR SINE MIR -21 241 4 350 204 68 0 chr4 43037718 43037806 -141250856 + MIR SINE MIR 79 172 -90 2209 106 0 26 chr4 43037807 43038119 -141250543 - AluSq SINE Alu -9 304 1 344 302 58 13 chr4 43038289 43038502 -141250160 + MIR SINE MIR 1 222 -40 383 292 91 27 chr4 43040058 43040277 -141248385 - L2 LINE L2 -6 3307 3075 207 0 0 0 chr4 43040297 43040320 -141248342 + (A)n Simple_repeat Simple_repeat 1 23 0 2013 128 7 7 chr4 43040464 43040754 -141247908 + AluSx SINE Alu 1 290 -22 1741 184 125 21 chr4 43041670 43042093 -141246569 + MLT1C LTR MaLR 1 467 0 209 95 0 24 chr4 43042167 43042209 -141246453 + (TTTTTA)n Simple_repeat Simple_repeat 2 42 0 2250 146 42 30 chr4 43042485 43042988 -141245674 - MLT2A2 LTR ERVL 0 515 1 1843 172 3 3 chr4 43043829 43044125 -141244537 + AluJb SINE Alu 1 296 -16 2202 98 0 3 chr4 43044148 43044466 -141244196 + AluSx SINE Alu 1 317 0 247 220 17 18 chr4 43046257 43046327 -141242335 + MIR SINE MIR 43 116 -92 1019 270 114 36 chr4 43047075 43047795 -141240867 + L1ME4a LINE L1 5337 6119 -2 1830 150 44 0 chr4 43047799 43048092 -141240570 - AluJo SINE Alu -6 306 1 1001 217 82 3 chr4 43048759 43049213 -141239449 + LTR33 LTR ERVL 2 513 -8 2586 74 0 0 chr4 43049943 43050254 -141238408 + AluY SINE Alu 1 311 0 1069 168 110 70 chr4 43051066 43051104 -141237558 - L1MC4 LINE L1 -256 7786 7751 2472 91 0 0 chr4 43051104 43051412 -141237250 - AluY SINE Alu -3 308 1 1069 168 110 70 chr4 43051412 43051510 -141237152 - L1MC4 LINE L1 -291 7751 7658 2162 140 0 0 chr4 43051510 43051817 -141236845 - AluSx SINE Alu -5 307 1 1069 168 110 70 chr4 43051817 43052024 -141236638 - L1MC4 LINE L1 -384 7658 7428 194 306 27 27 chr4 43053642 43053789 -141234873 - L2 LINE L2 -171 3101 2955 510 208 85 176 chr4 43053799 43054043 -141234619 + L2 LINE L2 2876 3056 -257 2300 104 3 0 chr4 43054043 43054341 -141234321 - AluSq SINE Alu -14 299 1 510 208 85 176 chr4 43054341 43054578 -141234084 + L2 LINE L2 3056 3313 0 549 327 36 14 chr4 43055025 43055438 -141233224 + L2 LINE L2 2365 2786 -528 2091 117 127 24 chr4 43055439 43055816 -141232846 + MSTA LTR MaLR 1 416 -12 333 306 169 4 chr4 43055817 43056078 -141232584 + L2 LINE L2 2804 3107 -206 1086 250 42 7 chr4 43056138 43056601 -141232061 - LTR33 LTR ERVL -3 518 1 2071 71 0 26 chr4 43056663 43056932 -141231730 + AluY SINE Alu 39 300 -11 2156 95 0 0 chr4 43056972 43057300 -141231362 + AluY SINE Alu 1 328 0 2006 144 3 0 chr4 43057309 43057594 -141231068 + AluSx SINE Alu 1 286 -26 2471 76 7 3 chr4 43057836 43058138 -141230524 + AluSp SINE Alu 1 303 -10 2016 115 40 0 chr4 43058387 43058665 -141229997 - AluSx SINE Alu -21 291 3 2436 72 3 0 chr4 43058744 43059048 -141229614 - AluY SINE Alu -5 306 2 2209 96 24 0 chr4 43059096 43059387 -141229275 - AluSc SINE Alu -11 298 1 210 154 0 26 chr4 43059682 43059721 -141228941 + GA-rich Low_complexity Low_complexity 3 40 0 391 275 38 0 chr4 43059779 43059910 -141228752 - MIR SINE MIR -61 201 66 2516 41 7 0 chr4 43060452 43060742 -141227920 - AluY SINE Alu -19 292 1 2266 110 0 0 chr4 43061123 43061424 -141227238 + AluSx SINE Alu 1 301 -11 537 267 47 58 chr4 43061478 43061736 -141226926 + MLT1I LTR MaLR 28 282 -127 2257 108 0 10 chr4 43062122 43062429 -141226233 + AluSx SINE Alu 1 304 -8 22 0 0 0 chr4 43063151 43063173 -141225489 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr4 43063629 43063652 -141225010 + AT_rich Low_complexity Low_complexity 1 23 0 2091 125 3 13 chr4 43063652 43063964 -141224698 - AluSc SINE Alu 0 309 1 494 267 41 12 chr4 43064097 43064269 -141224393 + MER117 DNA MER1_type 1 177 -20 287 308 44 15 chr4 43065008 43065188 -141223474 - MIR SINE MIR -2 260 3 1091 199 7 15 chr4 43066933 43067195 -141221467 + MLT1A1 LTR MaLR 1 328 -37 2413 93 0 0 chr4 43067195 43067497 -141221165 + AluY SINE Alu 1 302 -9 1091 199 7 15 chr4 43067497 43067535 -141221127 + MLT1A1 LTR MaLR 328 365 0 373 329 0 7 chr4 43067563 43067703 -141220959 + (TG)n Simple_repeat Simple_repeat 1 139 0 457 229 0 71 chr4 43068800 43068879 -141219783 - MIR SINE MIR -26 236 169 2174 97 0 21 chr4 43068879 43069192 -141219470 - AluSg SINE Alu 0 308 2 457 229 0 71 chr4 43069192 43069251 -141219411 - MIR SINE MIR -93 169 107 1899 212 105 26 chr4 43069340 43069798 -141218864 + MLT2B1 LTR ERVL 1 494 -26 184 122 49 0 chr4 43069799 43069840 -141218822 + (TA)n Simple_repeat Simple_repeat 2 44 0 380 297 126 28 chr4 43069962 43070144 -141218518 + MIR SINE MIR 8 207 -55 512 167 23 61 chr4 43070147 43070279 -141218383 - Charlie5 DNA MER1_type 0 2621 2495 5401 132 19 16 chr4 43070285 43070509 -141218153 + Tigger1 DNA MER2_type 24 246 -2172 2313 105 0 0 chr4 43070509 43070805 -141217857 - AluSx SINE Alu -16 296 1 5401 132 19 16 chr4 43070805 43071411 -141217251 + Tigger1 DNA MER2_type 246 857 -1561 24 0 0 0 chr4 43073386 43073410 -141215252 + AT_rich Low_complexity Low_complexity 1 24 0 396 267 133 38 chr4 43073506 43073716 -141214946 + MER102a DNA MER1_type 99 328 -2 2255 109 85 15 chr4 43074125 43074465 -141214197 - THE1B LTR MaLR 0 364 1 2210 104 20 0 chr4 43074907 43075204 -141213458 - AluSc SINE Alu -6 303 1 21 0 0 0 chr4 43075304 43075325 -141213337 + AT_rich Low_complexity Low_complexity 1 21 0 620 236 68 44 chr4 43075401 43075651 -141213011 + MER112 DNA MER1_type 1 256 0 1653 176 37 4 chr4 43075851 43076158 -141212504 + AluJo SINE Alu 1 316 0 1580 180 0 21 chr4 43076702 43076985 -141211677 + AluJb SINE Alu 1 277 -35 2385 96 3 0 chr4 43077038 43077339 -141211323 + AluSp SINE Alu 1 302 -11 332 274 29 98 chr4 43078854 43079058 -141209604 - MIR SINE MIR 0 262 73 515 274 42 30 chr4 43079648 43079951 -141208711 - MER115 DNA AcHobo -256 437 67 390 235 12 0 chr4 43079953 43080038 -141208624 + MER5A DNA MER1_type 9 94 -95 2382 90 0 7 chr4 43080056 43080355 -141208307 - AluSx SINE Alu -15 297 1 2389 69 0 16 chr4 43181172 43181477 -141107185 - AluY SINE Alu -3 308 9 372 266 110 32 chr4 43181781 43181999 -141106663 - L1MC4a LINE L1 -1778 6030 5796 232 243 57 0 chr4 43181979 43182049 -141106613 - L1P3 LINE L1 -381 5791 5718 * 1940 123 0 0 chr4 43182065 43182318 -141106344 + AluSx SINE Alu 1 253 -59 505 163 0 0 chr4 43182318 43182398 -141106264 + AluJ/FRAM SINE Alu 224 303 -9 385 269 218 24 chr4 43182399 43182697 -141105965 - L1MC4a LINE L1 -2101 5707 5352 8208 99 24 4 chr4 43182800 43183939 -141104723 + THE1-int LTR MaLR 420 1580 0 279 180 86 35 chr4 43184144 43184246 -141104416 - MLT1L LTR MaLR 0 615 399 2376 61 34 0 chr4 43184703 43184997 -141103665 + AluY SINE Alu 1 304 -7 286 257 80 26 chr4 43186980 43187093 -141101569 - Tigger8 DNA MER2_type -413 253 135 510 299 34 48 chr4 43187729 43187936 -141100726 + MIR SINE MIR 53 256 -6 1787 117 4 0 chr4 43187985 43188225 -141100437 + AluSx SINE Alu 2 242 -70 243 0 0 0 chr4 43188227 43188254 -141100408 + (A)n Simple_repeat Simple_repeat 1 27 0 1683 122 0 9 chr4 43188256 43188485 -141100177 + AluSq SINE Alu 1 227 -86 250 323 121 10 chr4 43188629 43188728 -141099934 + L2 LINE L2 3127 3236 -36 25 0 0 0 chr4 43188776 43188801 -141099861 + AT_rich Low_complexity Low_complexity 1 25 0 229 269 108 84 chr4 43190663 43190830 -141097832 - MIR3 SINE MIR -27 181 1 23 0 0 0 chr4 43191910 43191933 -141096729 + AT_rich Low_complexity Low_complexity 1 23 0 216 67 0 0 chr4 43192203 43192233 -141096429 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 254 344 98 47 chr4 43192931 43193363 -141095299 + L2 LINE L2 2614 3053 -219 1089 244 18 0 chr4 43193708 43193925 -141094737 + MER58A DNA MER1_type 1 221 -3 642 232 140 0 chr4 43193935 43194099 -141094563 + MER5A DNA MER1_type 1 187 -2 214 313 212 0 chr4 43194250 43194349 -141094313 + L2 LINE L2 3191 3310 -3 266 130 43 0 chr4 43194681 43194727 -141093935 + MIR SINE MIR 183 230 -32 3876 70 12 0 chr4 43194906 43195406 -141093256 - THE1B-int LTR MaLR -1073 507 2 2431 122 48 17 chr4 43195407 43195760 -141092902 - THE1B LTR MaLR 0 364 1 183 42 0 0 chr4 43195959 43195983 -141092679 + (CAG)n Simple_repeat Simple_repeat 1 24 0 1051 296 30 21 chr4 43196400 43197063 -141091599 + L2 LINE L2 2570 3313 0 595 167 25 17 chr4 43199094 43199214 -141089448 + MLT1B LTR MaLR 259 379 -11 2069 138 3 6 chr4 43199983 43200295 -141088367 + AluSq SINE Alu 3 313 0 267 54 0 0 chr4 43200322 43200359 -141088303 + (A)n Simple_repeat Simple_repeat 1 37 0 384 322 47 0 chr4 43201393 43201542 -141087120 + MER103 DNA DNA 11 166 0 246 292 88 26 chr4 43201667 43201780 -141086882 + MIR3 SINE MIR 69 188 -20 299 339 85 0 chr4 43202825 43202955 -141085707 + L2 LINE L2 2637 2777 -537 565 251 139 71 chr4 43202975 43203298 -141085364 + L2 LINE L2 2965 3309 -4 1387 107 13 31 chr4 43203569 43203794 -141084868 - L1PBa LINE L1 -6007 856 636 700 168 17 0 chr4 43203796 43203915 -141084747 - L1PBa LINE L1 -6663 200 80 835 166 109 49 chr4 43203915 43204302 -141084360 - LTR7 LTR ERV1 0 450 1 517 125 25 0 chr4 43204303 43204383 -141084279 - L1PBa LINE L1 -6780 83 2 846 118 128 21 chr4 43204385 43204511 -141084151 - L1 LINE L1 -1535 4611 4457 1953 94 24 42 chr4 43204511 43204799 -141083863 - AluSq SINE Alu -12 301 19 846 118 128 21 chr4 43204799 43204859 -141083803 - L1 LINE L1 -1689 4457 4405 436 242 11 0 chr4 43205831 43205926 -141082736 + MER103 DNA DNA 21 116 -50 204 313 45 45 chr4 43206644 43206756 -141081906 + MIR SINE MIR 16 127 -81 2166 140 100 124 chr4 43206884 43207335 -141081327 - Charlie1 DNA MER1_type -6 2755 2295 2317 123 0 0 chr4 43207335 43207645 -141081017 - AluSx SINE Alu -2 310 1 2166 140 100 124 chr4 43207645 43207776 -141080886 - Charlie1 DNA MER1_type -466 2295 2187 2340 106 0 0 chr4 43207776 43208078 -141080584 - AluSx SINE Alu -10 302 1 2166 140 100 124 chr4 43208078 43208123 -141080539 - Charlie1 DNA MER1_type -574 2187 2142 782 180 156 47 chr4 43208150 43208361 -141080301 - Charlie1 DNA MER1_type -1034 1727 1494 283 211 19 0 chr4 43208371 43208423 -141080239 - Charlie1 DNA MER1_type -2708 53 1 413 75 0 0 chr4 43208576 43208629 -141080033 + MLT2A1 LTR ERVL 392 444 0 7774 74 8 0 chr4 43208629 43209604 -141079058 + HERVL-A1 LTR ERVL 1 983 -4671 * 29035 62 16 19 chr4 43209583 43213300 -141075362 + HERVL-A1 LTR ERVL 1659 5361 -293 1807 189 27 3 chr4 43213302 43213678 -141074984 + L1 LINE L1 4014 4398 -1748 319 151 0 14 chr4 43213678 43213740 -141074922 + Alu SINE Alu 1 44 -255 211 224 15 0 chr4 43263764 43263831 -141024831 + (TA)n Simple_repeat Simple_repeat 1 68 0 629 230 153 9 chr4 43264749 43264971 -141023691 + MIR SINE MIR 2 255 -7 478 305 107 30 chr4 43264990 43265187 -141023475 + MIR SINE MIR 36 247 -15 4182 139 39 53 chr4 43265552 43265612 -141023050 - L1P LINE L1 -766 5380 5321 2289 101 3 0 chr4 43265612 43265909 -141022753 - AluSp SINE Alu -15 298 1 4182 139 39 53 chr4 43265909 43266227 -141022435 - L1P LINE L1 -825 5321 5000 2248 101 3 19 chr4 43266227 43266543 -141022119 - AluSq SINE Alu -2 311 1 4182 139 39 53 chr4 43266543 43267110 -141021552 - L1P LINE L1 -1146 5000 4447 2346 114 0 0 chr4 43267327 43267634 -141021028 - AluSx SINE Alu -5 307 1 306 0 0 0 chr4 43267834 43267868 -141020794 + (TAAAAA)n Simple_repeat Simple_repeat 2 35 0 406 278 35 26 chr4 43267955 43268070 -141020592 + L2 LINE L2 3196 3311 -2 21 0 0 0 chr4 43268173 43268194 -141020468 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr4 43268222 43268251 -141020411 + AT_rich Low_complexity Low_complexity 1 29 0 2205 101 0 16 chr4 43268780 43269087 -141019575 + AluSx SINE Alu 1 302 -10 216 0 0 0 chr4 43269090 43269114 -141019548 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 295 275 89 30 chr4 43269493 43269762 -141018900 - L1M4 LINE L1 -1608 4538 4254 522 263 93 111 chr4 43269947 43270760 -141017902 + L2 LINE L2 2511 3310 -3 2829 188 28 2 chr4 43270904 43271485 -141017177 + L1MB7 LINE L1 5570 6165 -19 2384 92 0 0 chr4 43274662 43274956 -141013706 - AluSg SINE Alu -16 294 1 705 193 133 0 chr4 43275465 43275631 -141013031 + MER5A DNA MER1_type 2 189 0 234 313 79 62 chr4 43275737 43275977 -141012685 + L2 LINE L2 1745 1988 -1326 21 0 0 0 chr4 43276454 43276475 -141012187 + AT_rich Low_complexity Low_complexity 1 21 0 1228 152 148 65 chr4 43279633 43279867 -141008795 + MER2 DNA MER2_type 1 269 -76 2217 118 0 9 chr4 43279867 43280182 -141008480 - AluSx SINE Alu 0 312 1 1228 152 148 65 chr4 43280182 43280257 -141008405 + MER2 DNA MER2_type 269 336 -9 180 128 0 103 chr4 43281295 43281334 -141007328 - MIR3 SINE MIR -42 166 132 22 0 0 0 chr4 43282022 43282044 -141006618 + AT_rich Low_complexity Low_complexity 1 22 0 387 325 179 16 chr4 43284445 43284898 -141003764 + L2 LINE L2 1977 2503 -811 * 582 253 114 12 chr4 43284896 43285062 -141003600 - L2 LINE L2 0 3313 3131 333 198 55 44 chr4 43285250 43285341 -141003321 - MIR SINE MIR -1 261 170 743 118 0 0 chr4 43285349 43285459 -141003203 - Alu SINE Alu -12 298 189 215 301 143 30 chr4 43285466 43285599 -141003063 + L2 LINE L2 3165 3312 -1 208 333 194 14 chr4 43286195 43286339 -141002323 + MIR SINE MIR 23 192 -70 620 311 79 9 chr4 43286347 43286575 -141002087 - MIR SINE MIR -6 256 13 2195 118 0 0 chr4 43286697 43286985 -141001677 + AluSx SINE Alu 1 288 -24 21 0 0 0 chr4 43287539 43287560 -141001102 + AT_rich Low_complexity Low_complexity 1 21 0 34 0 0 0 chr4 43288485 43288519 -141000143 + AT_rich Low_complexity Low_complexity 1 34 0 23 0 0 0 chr4 43290901 43290924 -140997738 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr4 43291327 43291348 -140997314 + AT_rich Low_complexity Low_complexity 1 21 0 221 326 155 39 chr4 43292203 43292332 -140996330 - MIR3 SINE MIR -27 181 38 185 338 62 0 chr4 43295433 43295513 -140993149 + MIR SINE MIR 173 257 -5 2266 67 0 17 chr4 43295647 43295947 -140992715 + AluY SINE Alu 17 311 0 816 331 36 24 chr4 43296129 43296464 -140992198 + L3 LINE CR1 1038 1376 -201 26 64 0 0 chr4 43297025 43297072 -140991590 + AT_rich Low_complexity Low_complexity 1 47 0 260 350 38 27 chr4 43297269 43297455 -140991207 - MIR SINE MIR -46 216 29 26 0 0 0 chr4 43298451 43298477 -140990185 + AT_rich Low_complexity Low_complexity 1 26 0 27 49 0 0 chr4 43298764 43298805 -140989857 + AT_rich Low_complexity Low_complexity 1 41 0 304 171 45 0 chr4 43298811 43298899 -140989763 + (TA)n Simple_repeat Simple_repeat 2 93 0 2506 66 0 0 chr4 43300572 43300874 -140987788 - AluY SINE Alu -9 302 1 1369 225 44 19 chr4 43301400 43301765 -140986897 + MLT1A2 LTR MaLR 1 374 0 22 35 0 0 chr4 43302420 43302449 -140986213 + AT_rich Low_complexity Low_complexity 1 29 0 219 267 0 33 chr4 43303679 43303739 -140984923 + GA-rich Low_complexity Low_complexity 4 61 0 1530 269 170 11 chr4 43303746 43304405 -140984257 + L2 LINE L2 1719 2482 -832 820 298 28 92 chr4 43304377 43304814 -140983848 + L2 LINE L2 2804 3212 -101 * 1125 186 67 1 chr4 43304814 43305123 -140983539 + MLT1A1 LTR MaLR 1 364 -1 361 257 40 10 chr4 43305124 43305225 -140983437 + L2 LINE L2 3208 3311 -2 295 147 80 27 chr4 43306663 43306738 -140981924 - L1PA13 LINE L1 -11 6152 6074 2271 103 10 0 chr4 43306739 43307040 -140981622 - AluSg SINE Alu -2 308 5 2486 47 0 7 chr4 43307053 43307349 -140981313 - AluY SINE Alu -17 294 1 34 24 0 0 chr4 43311259 43311300 -140977362 + AT_rich Low_complexity Low_complexity 1 41 0 1397 190 123 3 chr4 43312053 43312363 -140976299 - MER7A DNA MER2_type 0 346 2 22 56 0 0 chr4 43313060 43313096 -140975566 + AT_rich Low_complexity Low_complexity 1 36 0 24 32 0 0 chr4 43313587 43313618 -140975044 + AT_rich Low_complexity Low_complexity 1 31 0 247 279 108 62 chr4 43314177 43314306 -140974356 - MIR SINE MIR -79 183 49 21 0 0 0 chr4 43314359 43314380 -140974282 + AT_rich Low_complexity Low_complexity 1 21 0 2359 100 10 0 chr4 43315829 43316138 -140972524 + AluSx SINE Alu 1 312 0 259 238 213 12 chr4 43316896 43316976 -140971686 + L2 LINE L2 3214 3309 -4 323 226 71 58 chr4 43317041 43317196 -140971466 - L1ME LINE L1 -329 5792 5636 21 0 0 0 chr4 43319003 43319024 -140969638 + AT_rich Low_complexity Low_complexity 1 21 0 4277 60 24 24 chr4 43320305 43320892 -140967770 + L1PA12 LINE L1 5567 6153 -15 35 24 0 0 chr4 43321188 43321230 -140967432 + AT_rich Low_complexity Low_complexity 1 42 0 544 267 67 29 chr4 43321892 43322207 -140966455 + L1ME4a LINE L1 5758 6084 -37 287 313 110 87 chr4 43324885 43325185 -140963477 + L2 LINE L2 2962 3268 -4 319 308 69 25 chr4 43327870 43328029 -140960633 + MIR SINE MIR 86 251 -11 407 326 21 28 chr4 43329794 43329935 -140958727 + MIR3 SINE MIR 58 197 -11 334 315 87 0 chr4 43330435 43330562 -140958100 - L2 LINE L2 0 3313 3176 522 225 84 28 chr4 43330625 43330767 -140957895 + MIR SINE MIR 110 259 -3 311 284 148 18 chr4 43330811 43330980 -140957682 - L2 LINE L2 -239 3074 2884 349 328 52 0 chr4 43331078 43331212 -140957450 - L2 LINE L2 -663 2651 2511 335 208 57 9 chr4 43331310 43331416 -140957246 + Charlie5 DNA MER1_type 2436 2546 -66 222 267 82 30 chr4 43331613 43331762 -140956900 + MIR SINE MIR 66 262 0 308 273 136 0 chr4 43331803 43331913 -140956749 + MIR SINE MIR 26 150 -112 264 264 0 0 chr4 43332748 43332835 -140955827 - L1MC4 LINE L1 -1339 6703 6617 351 0 0 0 chr4 43333123 43333162 -140955500 + (CA)n Simple_repeat Simple_repeat 2 40 0 1093 216 97 22 chr4 43336760 43337079 -140951583 + MER2 DNA MER2_type 2 344 0 188 333 13 26 chr4 43338193 43338271 -140950391 + L3 LINE CR1 812 888 -689 413 179 295 58 chr4 43338323 43338479 -140950183 + L3 LINE CR1 1385 1577 0 668 265 60 19 chr4 43340395 43340610 -140948052 + L2 LINE L2 2381 2604 -710 410 230 40 0 chr4 43340617 43340717 -140947945 + MER5B DNA MER1_type 65 168 -10 289 266 75 20 chr4 43340751 43340899 -140947763 - MIR SINE MIR -64 144 10 561 217 63 57 chr4 43342441 43342616 -140946046 - MER5B DNA MER1_type 0 178 3 667 191 88 4 chr4 43344328 43344529 -140944133 + MER33 DNA MER1_type 1 218 -106 32 86 0 0 chr4 43344529 43344610 -140944052 + AT_rich Low_complexity Low_complexity 1 81 0 349 244 93 63 chr4 43345059 43345264 -140943398 + L1ME LINE L1 4498 4708 -1438 624 260 114 4 chr4 43345896 43346142 -140942520 + L1ME LINE L1 5479 5751 -370 403 237 32 11 chr4 43346215 43346308 -140942354 - L2 LINE L2 0 3313 3219 381 280 40 8 chr4 43346632 43346757 -140941905 - L2 LINE L2 0 3313 3185 468 138 154 49 chr4 43346838 43346961 -140941701 - L2 LINE L2 0 3313 3178 2403 104 34 14 chr4 43347908 43348265 -140940397 + THE1B LTR MaLR 1 364 0 1298 68 39 10 chr4 43348265 43348472 -140940190 + THE1B-int LTR MaLR 1 213 -1367 359 65 0 0 chr4 43348473 43348519 -140940143 + THE1A LTR MaLR 310 355 0 566 253 61 31 chr4 43348673 43348902 -140939760 + MLT1J LTR MaLR 231 466 -45 238 295 179 6 chr4 43348980 43349136 -140939526 + L2 LINE L2 2138 2320 -994 252 294 87 11 chr4 43349254 43349346 -140939316 + MER5A DNA MER1_type 7 105 -84 2429 91 67 3 chr4 43349569 43349911 -140938751 + THE1B LTR MaLR 1 364 0 183 204 23 0 chr4 43349914 43349958 -140938704 + L2 LINE L2 2826 2870 -443 588 98 22 11 chr4 43349967 43350059 -140938603 + THE1B LTR MaLR 272 364 0 885 254 206 24 chr4 43350062 43350475 -140938187 + L2 LINE L2 2826 3313 0 190 371 34 0 chr4 43350681 43350770 -140937892 + L3 LINE CR1 1478 1569 -8 546 220 176 6 chr4 43350989 43351148 -140937514 + MER5A DNA MER1_type 4 189 0 320 265 49 29 chr4 43352067 43352169 -140936493 - L2 LINE L2 -18 3254 3151 * 342 293 17 12 chr4 43352152 43352326 -140936336 + MIR SINE MIR 48 222 -40 193 301 151 11 chr4 43353020 43353113 -140935549 - L2 LINE L2 -10 3262 3157 381 312 138 42 chr4 43353873 43354258 -140934404 - L1M2 LINE L1 -5919 930 509 3752 156 70 39 chr4 43357485 43357781 -140930881 + L1MB8 LINE L1 4869 5154 -1024 2256 92 4 0 chr4 43357781 43358090 -140930572 + AluSx SINE Alu 3 312 0 3752 156 70 39 chr4 43358090 43358229 -140930433 + L1MB8 LINE L1 5154 5287 -891 1580 185 11 17 chr4 43358229 43358516 -140930146 + AluJb SINE Alu 13 297 -15 3752 156 70 39 chr4 43358516 43359352 -140929310 + L1MB8 LINE L1 5287 6177 -1 603 330 136 16 chr4 43360028 43360395 -140928267 + L2 LINE L2 2483 2893 -421 374 293 138 25 chr4 43360383 43360622 -140928040 + L2 LINE L2 3048 3313 0 * 25 31 0 0 chr4 43361379 43361411 -140927251 + AT_rich Low_complexity Low_complexity 1 32 0 638 204 20 13 chr4 43361592 43361744 -140926918 - L1MA10 LINE L1 -2 6332 6180 279 378 15 22 chr4 43361787 43361922 -140926740 - L2 LINE L2 -1 3312 3179 26 0 0 0 chr4 43362194 43362220 -140926442 + AT_rich Low_complexity Low_complexity 1 26 0 1279 96 0 0 chr4 43362406 43362563 -140926099 + AluSc SINE Alu 1 157 -152 3065 145 15 28 chr4 43362704 43363249 -140925413 - MER34 LTR ERV1 -4 538 1 733 251 231 63 chr4 43363337 43363683 -140924979 - L1MC4 LINE L1 -2 8040 7754 1957 151 0 0 chr4 43363683 43363967 -140924695 - AluSx SINE Alu -28 284 1 733 251 231 63 chr4 43363967 43364000 -140924662 - L1MC4 LINE L1 -288 7754 7728 180 0 0 0 chr4 43364000 43364020 -140924642 + (TA)n Simple_repeat Simple_repeat 2 21 0 733 251 231 63 chr4 43364020 43364453 -140924209 - L1MC4 LINE L1 -314 7728 7090 1923 126 7 0 chr4 43364742 43365013 -140923649 - AluSx SINE Alu -39 273 1 3090 131 15 9 chr4 43365285 43365811 -140922851 - Tigger3(Golem) DNA MER2_type -1 3028 2500 5591 45 0 3 chr4 43365811 43366497 -140922165 - L1PA4 LINE L1 0 6155 5472 410 154 13 0 chr4 43366774 43366852 -140921810 + (TG)n Simple_repeat Simple_repeat 2 80 0 354 193 114 0 chr4 43366899 43366987 -140921675 + MIR SINE MIR 117 214 -48 322 159 0 0 chr4 43367569 43367632 -140921030 + THE1B LTR MaLR 1 63 -301 392 91 61 15 chr4 43367732 43367798 -140920864 + L1M4c LINE L1 630 698 -5686 260 65 43 22 chr4 43367821 43367867 -140920795 + AluSq/x SINE Alu 89 135 -167 2406 76 3 3 chr4 43367867 43368168 -140920494 + AluY SINE Alu 1 301 -10 1932 137 10 26 chr4 43368177 43368483 -140920179 + AluSx SINE Alu 2 302 -10 1832 160 14 0 chr4 43368483 43368840 -140919822 + L1M4c LINE L1 892 1253 -5131 1885 126 18 24 chr4 43368988 43369090 -140919572 - L1MA5A LINE L1 -6 6291 6190 5081 63 17 5 chr4 43369090 43369742 -140918920 - PABL_A LTR ERV1 0 660 1 1885 126 18 24 chr4 43369742 43369973 -140918689 - L1MA5A LINE L1 -107 6190 5960 597 196 9 0 chr4 43369982 43370089 -140918573 - AluSc SINE Alu -53 256 149 943 133 4 122 chr4 43370089 43370257 -140918405 - L1MA5A LINE L1 -325 5972 5843 1757 191 0 10 chr4 43370257 43370556 -140918106 - AluJb SINE Alu -16 296 1 943 133 4 122 chr4 43370556 43370642 -140918020 - L1MA5A LINE L1 -454 5843 5748 2846 68 90 0 chr4 43370815 43371225 -140917437 - L1PA8A LINE L1 -350 5781 5335 234 353 48 60 chr4 43371251 43371270 -140917392 + MIR SINE MIR 81 99 -163 2272 191 65 63 chr4 43371270 43371873 -140916789 - MER77 LTR ERV1 0 605 2 234 353 48 60 chr4 43371873 43372020 -140916642 + MIR SINE MIR 99 245 -17 3271 223 23 6 chr4 43372180 43373150 -140915512 + L1M4 LINE L1 4444 5428 -743 2169 157 20 3 chr4 43373167 43373827 -140914835 + L1P5 LINE L1 4934 5605 -546 219 69 0 0 chr4 43374316 43374345 -140914317 + (TC)n Simple_repeat Simple_repeat 2 30 0 257 289 13 40 chr4 43374667 43374743 -140913919 + MIR3 SINE MIR 129 202 -6 665 55 0 11 chr4 43374779 43374870 -140913792 + (GGAA)n Simple_repeat Simple_repeat 1 90 0 345 210 65 101 chr4 43375947 43376034 -140912628 - L2 LINE L2 -5 3308 3226 2294 110 0 0 chr4 43376034 43376333 -140912329 + AluSq SINE Alu 1 299 -14 345 210 65 101 chr4 43376333 43376383 -140912279 - L2 LINE L2 -87 3226 3176 297 0 0 0 chr4 43377964 43377997 -140910665 + (TA)n Simple_repeat Simple_repeat 1 33 0 192 176 44 0 chr4 43378101 43378169 -140910493 + (TA)n Simple_repeat Simple_repeat 1 71 0 233 250 23 0 chr4 43378230 43378318 -140910344 - L1MC4 LINE L1 -1339 6703 6614 266 372 80 15 chr4 43378518 43378655 -140910007 + L2 LINE L2 3127 3272 0 1414 256 14 26 chr4 43379101 43379527 -140909135 - LTR40c LTR ERVL -22 443 23 21 0 0 0 chr4 43379601 43379622 -140909040 + AT_rich Low_complexity Low_complexity 1 21 0 259 343 176 27 chr4 43379735 43380286 -140908376 - L2 LINE L2 -431 2883 2251 558 270 0 0 chr4 43380412 43380527 -140908135 + FLAM_A SINE Alu 1 115 -18 3764 113 3 15 chr4 43380531 43380969 -140907693 - L1PA16 LINE L1 -62 6104 5673 1756 173 10 23 chr4 43380969 43381275 -140907387 - AluJo SINE Alu -10 302 1 3764 113 3 15 chr4 43381275 43381436 -140907226 - L1PA16 LINE L1 -493 5673 5512 38 22 0 0 chr4 43381543 43381588 -140907074 + AT_rich Low_complexity Low_complexity 1 45 0 279 315 55 42 chr4 43381635 43381800 -140906862 - L2 LINE L2 -1372 1942 1776 867 208 80 109 chr4 43381972 43382448 -140906214 - LTR37B LTR ERV1 0 468 7 865 274 87 48 chr4 43382483 43382667 -140905995 - LTR33 LTR ERVL 0 521 345 2098 142 3 7 chr4 43382667 43382977 -140905685 + AluSx SINE Alu 1 309 -3 865 274 87 48 chr4 43382977 43383289 -140905373 - LTR33 LTR ERVL -176 345 6 358 239 11 0 chr4 43383393 43383481 -140905181 - L1P LINE L1 -1257 4889 4801 241 394 21 16 chr4 43383611 43383804 -140904858 - L2 LINE L2 -1963 1351 1158 6386 126 1 0 chr4 43383904 43384945 -140903717 + L1P LINE L1 4253 5294 -852 1329 208 13 20 chr4 43385048 43385543 -140903119 - L1PA15-16 LINE L1 -3670 2476 1989 25 31 0 0 chr4 43385935 43385967 -140902695 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr4 43387073 43387096 -140901566 + AT_rich Low_complexity Low_complexity 1 23 0 1072 153 16 0 chr4 43387492 43387681 -140900981 - MLT1D LTR MaLR -290 215 24 385 279 103 0 chr4 43388795 43388931 -140899731 - MIR SINE MIR -29 233 84 249 311 127 32 chr4 43388934 43389217 -140899445 + L2 LINE L2 1994 2303 -1011 1792 204 22 0 chr4 43389451 43389808 -140898854 + MLT1A1 LTR MaLR 1 365 0 226 176 0 59 chr4 43390822 43390873 -140897789 + GA-rich Low_complexity Low_complexity 3 50 0 1690 225 17 0 chr4 43391008 43391363 -140897299 - MLT1A1 LTR MaLR 0 365 5 261 331 167 14 chr4 43391828 43392175 -140896487 + L2 LINE L2 2120 2519 -795 332 333 8 48 chr4 43392261 43392326 -140896336 + L2 LINE L2 3193 3252 -61 816 238 33 28 chr4 43392326 43392540 -140896122 - MER20 DNA MER1_type -4 215 1 332 333 8 48 chr4 43392540 43392600 -140896062 + L2 LINE L2 3252 3313 0 291 261 65 85 chr4 43392742 43392895 -140895767 + MER5A DNA MER1_type 29 189 0 240 284 98 29 chr4 43392895 43392985 -140895677 + MIR SINE MIR 32 128 -80 399 251 191 16 chr4 43393037 43393220 -140895442 - MIR SINE MIR -3 259 45 220 257 257 46 chr4 43393553 43393705 -140894957 + MER5A DNA MER1_type 4 187 -2 308 333 123 0 chr4 43394618 43394732 -140893930 + MIR3 SINE MIR 33 160 -48 21 0 0 0 chr4 43394876 43394897 -140893765 + AT_rich Low_complexity Low_complexity 1 21 0 599 275 0 34 chr4 43395043 43395221 -140893441 - MIR SINE MIR 0 262 91 1564 284 9 28 chr4 43395807 43396377 -140892285 + L1MCb LINE L1 4 562 -5483 752 274 9 18 chr4 43396440 43396714 -140891948 + L1MCb LINE L1 572 821 -5224 * 5344 165 12 6 chr4 43396697 43397758 -140890904 + L1MA3 LINE L1 4053 5120 -1026 4256 132 12 21 chr4 43397762 43398519 -140890143 + L1MA3 LINE L1 5556 6305 0 6158 166 62 20 chr4 43398542 43399874 -140888788 + L1MC3 LINE L1 6397 7783 -2 183 200 0 0 chr4 43400945 43400975 -140887687 + MER5A DNA MER1_type 1 30 -159 219 69 0 0 chr4 43402029 43402058 -140886604 + (TA)n Simple_repeat Simple_repeat 1 29 0 1530 194 79 9 chr4 43402429 43402758 -140885904 - MLT1A1 LTR MaLR 0 365 14 414 0 0 0 chr4 43403633 43403679 -140884983 + (TC)n Simple_repeat Simple_repeat 2 47 0 387 0 0 0 chr4 43403678 43403721 -140884941 + (TA)n Simple_repeat Simple_repeat 1 43 0 * 1284 173 18 14 chr4 43404075 43404147 -140884515 + L1MA8 LINE L1 6007 6077 -214 2544 77 46 6 chr4 43404147 43404497 -140884165 + THE1B LTR MaLR 1 364 0 1284 173 18 14 chr4 43404497 43404707 -140883955 + L1MA8 LINE L1 6077 6290 -1 290 281 231 29 chr4 43405468 43405652 -140883010 - MIR SINE MIR -6 256 38 592 314 21 5 chr4 43406270 43406470 -140882192 + MIR SINE MIR 23 230 -32 1051 208 131 67 chr4 43407274 43407725 -140880937 + MER74B LTR ERVL 69 548 -74 795 216 216 42 chr4 43408193 43408480 -140880182 + LTR16C LTR ERVL 155 491 0 188 375 0 12 chr4 43409338 43409418 -140879244 + L2 LINE L2 3235 3313 0 462 239 8 62 chr4 43409869 43409999 -140878663 - L2 LINE L2 -1 3312 3190 520 257 20 118 chr4 43411417 43411713 -140876949 + L2 LINE L2 3046 3312 -1 303 383 0 8 chr4 43411761 43411881 -140876781 + MIR SINE MIR 32 150 -112 275 158 0 18 chr4 43412216 43412273 -140876389 + (TA)n Simple_repeat Simple_repeat 1 56 0 325 28 1 0 chr4 43412276 43412332 -140876330 + L1P5 LINE L1 5783 5828 -323 277 316 24 0 chr4 43412332 43412500 -140876162 + (CATATA)n Simple_repeat Simple_repeat 3 174 0 229 221 70 12 chr4 43412533 43412619 -140876043 + L1MC4 LINE L1 6615 6705 -1337 * 13602 160 51 5 chr4 43412601 43413597 -140875065 - L1P5 LINE L1 -360 6507 5559 2174 82 11 11 chr4 43413597 43413939 -140874723 - AluY SINE Alu 0 342 1 13602 160 51 5 chr4 43413939 43414325 -140874337 - L1P5 LINE L1 -1308 5559 5192 213 39 0 0 chr4 43414325 43414351 -140874311 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 13602 160 51 5 chr4 43414351 43419118 -140869544 - L1P5 LINE L1 -1675 5192 3 2561 48 0 13 chr4 43419149 43419460 -140869202 - AluY SINE Alu -4 307 1 2116 109 0 64 chr4 43419781 43420110 -140868552 + AluSx SINE Alu 1 308 -4 1387 303 43 53 chr4 43422325 43422906 -140865756 + MER115 DNA AcHobo 116 690 -3 1932 172 34 3 chr4 43423538 43423892 -140864770 - MLT1A1 LTR MaLR 0 365 1 265 320 55 6 chr4 43425662 43425843 -140862819 - Charlie8 DNA MER1_type -2142 275 86 850 213 16 86 chr4 43426507 43426821 -140861841 + MLT1A1 LTR MaLR 4 295 -70 228 111 0 0 chr4 43427712 43427748 -140860914 + (TAGA)n Simple_repeat Simple_repeat 3 38 0 1451 247 55 13 chr4 43427983 43428460 -140860202 + L1MC4 LINE L1 7102 7598 -444 464 309 102 37 chr4 43428640 43428934 -140859728 - HAL1 LINE L1 -632 1875 1563 1790 116 45 116 chr4 43429815 43430219 -140858443 - THE1C LTR MaLR 0 375 1 2123 130 52 11 chr4 43430225 43430594 -140858068 - THE1C-int LTR MaLR -6 1574 1191 7886 128 34 14 chr4 43430694 43432012 -140856650 - THE1C-int LTR MaLR -234 1346 2 1661 155 64 64 chr4 43432013 43432388 -140856274 - THE1C LTR MaLR 0 375 1 462 304 54 0 chr4 43432388 43432592 -140856070 - Tigger8 DNA MER2_type -301 365 151 188 423 21 0 chr4 43433183 43433280 -140855382 + L2 LINE L2 2828 2926 -387 665 251 87 27 chr4 43433336 43433555 -140855107 - MIR SINE MIR -30 232 1 365 255 64 11 chr4 43433997 43434091 -140854571 - L2 LINE L2 0 3313 3215 1859 136 69 30 chr4 43434871 43435232 -140853430 + THE1C LTR MaLR 1 375 0 186 326 170 7 chr4 43435350 43435491 -140853171 - L2 LINE L2 -527 2787 2624 218 96 58 39 chr4 43435686 43435738 -140852924 + T-rich Low_complexity Low_complexity 2 54 0 471 137 0 0 chr4 43435909 43435982 -140852680 + LTR32 LTR ERVL 15 87 -384 239 59 29 0 chr4 43435963 43435997 -140852665 + LTR32 LTR ERVL 15 49 -422 * 1351 165 13 0 chr4 43435998 43436234 -140852428 + LTR32 LTR ERVL 233 471 0 615 360 54 2 chr4 43437147 43437575 -140851087 + ERVL LTR ERVL 4706 5155 -609 550 259 56 10 chr4 43438003 43438200 -140850462 + LTR16A1 LTR ERVL 251 456 -1 282 308 75 30 chr4 43438330 43438463 -140850199 + MIR SINE MIR 120 258 -4 292 313 138 0 chr4 43439518 43439678 -140848984 + MLT1L LTR MaLR 362 543 -72 541 318 64 17 chr4 43440456 43440689 -140847973 - MIR SINE MIR 0 262 19 2156 72 22 4 chr4 43441584 43441860 -140846802 + AluY SINE Alu 28 308 -3 1687 84 13 4 chr4 43442310 43442549 -140846113 - L1PA11 LINE L1 -4 6170 5930 1749 78 4 0 chr4 43442549 43442779 -140845883 + L1PA11 LINE L1 5665 5895 -279 21 0 0 0 chr4 43443122 43443143 -140845519 + AT_rich Low_complexity Low_complexity 1 21 0 295 247 0 13 chr4 43443282 43443359 -140845303 - MLT1H LTR MaLR -388 161 86 2017 202 103 19 chr4 43443480 43443946 -140844716 + MLT1D LTR MaLR 1 505 0 209 330 149 0 chr4 43445800 43445894 -140842768 + L2 LINE L2 3163 3270 -2 317 269 106 19 chr4 43446462 43446566 -140842096 + MIR SINE MIR 147 259 -3 414 39 0 0 chr4 43447202 43447254 -140841408 + (TAA)n Simple_repeat Simple_repeat 3 54 0 23 54 0 0 chr4 43448073 43448110 -140840552 + AT_rich Low_complexity Low_complexity 1 37 0 214 313 10 52 chr4 43448463 43448559 -140840103 - MER5B DNA MER1_type 0 178 87 257 253 69 0 chr4 43449474 43449561 -140839101 + MER91B DNA MER1_type 1 96 -44 367 328 0 8 chr4 43452650 43452769 -140835893 - 7SK RNA RNA -68 125 8 274 225 147 0 chr4 43452963 43453092 -140835570 - L1ME4a LINE L1 -1 6120 5973 393 265 47 74 chr4 43453165 43453473 -140835189 + MLT1J2 LTR MaLR 102 448 -2 372 335 71 22 chr4 43453492 43453898 -140834764 - L1ME4a LINE L1 -209 5912 5487 13659 142 57 2 chr4 43453898 43454841 -140833821 - Tigger1 DNA MER2_type 0 2418 1528 1787 159 3 38 chr4 43454841 43455155 -140833507 + AluJb SINE Alu 1 303 -9 13659 142 57 2 chr4 43455155 43456501 -140832161 - Tigger1 DNA MER2_type -890 1528 3 204 40 0 0 chr4 43456718 43456743 -140831919 + (GA)n Simple_repeat Simple_repeat 2 26 0 259 172 94 0 chr4 43457064 43457128 -140831534 + L1PA10 LINE L1 6087 6156 -12 3320 67 30 0 chr4 43457918 43458349 -140830313 + MLT2A1 LTR ERVL 1 444 0 239 371 65 24 chr4 43458742 43458912 -140829750 + L2 LINE L2 3096 3272 0 2199 209 18 12 chr4 43459187 43459690 -140828972 + L1MB7 LINE L1 5679 6184 0 190 385 48 29 chr4 43459692 43459796 -140828866 - MIR3 SINE MIR -95 113 8 313 185 0 46 chr4 43461123 43461188 -140827474 + MLT1L LTR MaLR 1 62 -553 489 300 95 14 chr4 43461331 43461541 -140827121 + MLT1L LTR MaLR 305 531 -84 381 43 0 0 chr4 43461964 43462011 -140826651 + (TG)n Simple_repeat Simple_repeat 1 47 0 284 360 58 53 chr4 43462377 43462794 -140825868 - L2 LINE L2 -2 3270 2852 22 0 0 0 chr4 43462940 43462962 -140825700 + AT_rich Low_complexity Low_complexity 1 22 0 8751 192 33 21 chr4 43463584 43465679 -140822983 + L1MA4A LINE L1 1804 3955 -2893 1820 180 10 0 chr4 43465679 43465984 -140822678 + AluJo SINE Alu 3 310 -2 8751 192 33 21 chr4 43465984 43467077 -140821585 + L1MA4A LINE L1 3955 5033 -1815 5450 134 20 4 chr4 43467177 43468327 -140820335 + L1MA4A LINE L1 5700 7005 0 565 259 98 10 chr4 43469693 43469886 -140818776 + MIR SINE MIR 5 214 -48 2080 130 3 0 chr4 43470023 43470315 -140818347 + AluSx SINE Alu 1 293 -19 190 333 0 29 chr4 43470419 43470488 -140818174 - L2 LINE L2 -2 3270 3204 320 196 0 0 chr4 43472749 43472800 -140815862 - Alu SINE Alu -251 51 1 410 210 153 24 chr4 43473881 43474005 -140814657 + HsTC2 DNA Tc2 1 140 -1758 * 1610 235 16 25 chr4 43474002 43474448 -140814214 + HsTC2 DNA Tc2 1283 1900 0 212 321 12 12 chr4 43475654 43475738 -140812924 - L2 LINE L2 0 3313 3230 21 36 0 0 chr4 43477002 43477030 -140811632 + AT_rich Low_complexity Low_complexity 1 28 0 287 300 3 0 chr4 43477341 43477437 -140811225 + L1ME LINE L1 5614 5711 -450 305 172 16 0 chr4 43477997 43478061 -140810601 - L1ME1 LINE L1 -12 6154 6090 281 281 116 16 chr4 43480447 43480568 -140808094 + MIR SINE MIR 9 141 -121 231 304 13 0 chr4 43480569 43480648 -140808014 - MER116 DNA Mariner 0 80 1 322 288 84 63 chr4 43481676 43481867 -140806795 + L2 LINE L2 3115 3309 -4 21 0 0 0 chr4 43481906 43481927 -140806735 + AT_rich Low_complexity Low_complexity 1 21 0 180 343 14 14 chr4 43482564 43482634 -140806028 + MIR SINE MIR 17 86 -122 328 279 18 9 chr4 43483299 43483410 -140805252 - MER20B DNA MER1_type 0 783 672 678 247 85 17 chr4 43483424 43483652 -140805010 + MER46C DNA MER2_type 5 248 -90 336 102 41 0 chr4 43483652 43483701 -140804961 - THE1C LTR MaLR 0 375 325 2019 88 33 0 chr4 43483702 43483976 -140804686 - THE1C LTR MaLR 0 375 93 807 186 23 121 chr4 43484109 43484373 -140804289 + MLT1B LTR MaLR 8 245 -145 518 232 20 66 chr4 43484575 43484726 -140803936 - MER20B DNA MER1_type -302 481 338 268 274 24 12 chr4 43484904 43484988 -140803674 - MER20B DNA MER1_type -693 90 6 2232 74 0 14 chr4 43486156 43486512 -140802150 - AluSc SINE Alu 0 352 1 337 289 118 7 chr4 43486757 43486892 -140801770 - MIR SINE MIR -60 202 53 257 273 55 62 chr4 43487429 43487557 -140801105 - MIR3 SINE MIR -11 197 71 2260 102 0 3 chr4 43489362 43489657 -140799005 - AluSx SINE Alu -18 294 1 345 292 153 36 chr4 43489999 43490333 -140798329 + L2 LINE L2 2127 2493 -821 3238 237 57 10 chr4 43490394 43491629 -140797033 + L1ME1 LINE L1 4269 5597 -569 2215 130 0 0 chr4 43491629 43491937 -140796725 - AluSg SINE Alu -2 308 1 3238 237 57 10 chr4 43491937 43492229 -140796433 + L1ME1 LINE L1 5597 5874 -292 195 385 0 18 chr4 43492668 43492777 -140795885 + MIR SINE MIR 156 262 0 2588 163 29 2 chr4 43493662 43494111 -140794551 - MLT1C LTR MaLR -2 465 5 461 305 34 50 chr4 43496000 43496239 -140792423 - HAL1 LINE L1 -1160 1347 1113 341 95 16 0 chr4 43496461 43496524 -140792138 + (TC)n Simple_repeat Simple_repeat 2 65 0 268 268 0 16 chr4 43496523 43496646 -140792016 + (TATG)n Simple_repeat Simple_repeat 2 122 0 * 1168 236 16 19 chr4 43496748 43497062 -140791600 + L1PA16 LINE L1 2417 2729 -3417 9451 187 27 27 chr4 43497082 43497159 -140791503 + L1PA16 LINE L1 2971 3046 -3120 1818 149 0 40 chr4 43497159 43497461 -140791201 + AluJb SINE Alu 1 290 -22 9451 187 27 27 chr4 43497461 43500585 -140788077 + L1PA16 LINE L1 3046 6166 0 196 253 0 101 chr4 43501287 43501366 -140787296 - MIR SINE MIR -70 192 122 282 222 0 0 chr4 43501487 43501541 -140787121 + MIR SINE MIR 158 211 -51 2084 240 111 72 chr4 43501781 43502958 -140785704 - MER69B DNA AcHobo -1 1225 3 432 318 13 26 chr4 43503948 43504099 -140784563 + MER5B DNA MER1_type 1 149 -29 2261 92 0 10 chr4 43505468 43505773 -140782889 - AluY SINE Alu -9 302 1 1948 172 19 14 chr4 43506136 43506497 -140782165 - MLT1A1 LTR MaLR -2 363 1 376 299 9 28 chr4 43507419 43507526 -140781136 - L2 LINE L2 0 3272 3168 726 284 15 46 chr4 43507531 43507792 -140780870 + Charlie2 DNA MER1_type 2 254 -2608 271 397 30 0 chr4 43507873 43508004 -140780658 - L2 LINE L2 -9 3263 3129 1189 271 45 59 chr4 43508528 43509228 -140779434 - L2 LINE L2 0 3313 2624 525 317 64 40 chr4 43509228 43509556 -140779106 - LTR16C LTR ERVL 0 491 156 2082 285 70 16 chr4 43509752 43510521 -140778141 - L2 LINE L2 -687 2627 1817 989 245 26 40 chr4 43510535 43510808 -140777854 - L2 LINE L2 -2085 1229 961 298 250 0 0 chr4 43510913 43510973 -140777689 - L1MD3 LINE L1 -67 7928 7869 256 307 29 71 chr4 43511134 43511213 -140777449 + MIR SINE MIR 26 98 -164 2211 193 49 28 chr4 43511213 43511720 -140776942 + LTR53 LTR ERVL 2 519 0 256 307 29 71 chr4 43511720 43511780 -140776882 + MIR SINE MIR 98 159 -103 206 253 86 81 chr4 43511915 43512089 -140776573 + L2 LINE L2 3121 3295 -18 210 129 0 0 chr4 43512091 43512122 -140776540 - MIR SINE MIR 0 262 232 1229 270 80 28 chr4 43512143 43512290 -140776372 - MLT1H1 LTR MaLR -4 547 409 2065 197 0 0 chr4 43512290 43512655 -140776007 - MLT1A1 LTR MaLR 0 365 1 1229 270 80 28 chr4 43512655 43512947 -140775715 - MLT1H1 LTR MaLR -142 409 11 201 316 0 53 chr4 43512958 43513034 -140775628 - MIR SINE MIR -111 151 80 432 0 0 0 chr4 43513538 43513586 -140775076 + (TG)n Simple_repeat Simple_repeat 2 49 0 250 282 226 28 chr4 43513822 43514003 -140774659 + MIR SINE MIR 46 262 0 241 279 0 0 chr4 43514079 43514140 -140774522 + L2 LINE L2 3238 3298 -15 240 276 66 21 chr4 43514239 43514363 -140774299 + MIR SINE MIR 13 130 -132 2710 110 0 0 chr4 43514363 43514727 -140773935 - THE1B LTR MaLR 0 364 1 10863 106 8 25 chr4 43514727 43516335 -140772327 - THE1B-int LTR MaLR 0 1580 1 2491 124 6 0 chr4 43516335 43516697 -140771965 - THE1B LTR MaLR 0 364 1 240 276 66 21 chr4 43516697 43516745 -140771917 + MIR SINE MIR 129 242 -20 2201 117 32 32 chr4 43516958 43517333 -140771329 + THE1C LTR MaLR 1 375 0 1046 174 0 46 chr4 43518026 43518201 -140770461 + MER2 DNA MER2_type 1 166 -179 15136 136 57 12 chr4 43518201 43520813 -140767849 + Tigger4(Zombi) DNA MER2_type 2 2731 0 1046 174 0 46 chr4 43520813 43520856 -140767806 + MER2 DNA MER2_type 166 209 -136 267 204 41 0 chr4 43520904 43520953 -140767709 + MER2 DNA MER2_type 280 330 -15 544 92 0 13 chr4 43521068 43521144 -140767518 + MER93b LTR ERV1 1 75 -298 3434 173 78 42 chr4 43521144 43521886 -140766776 - MER21B LTR ERV1 -1 862 94 1128 187 83 0 chr4 43521907 43522148 -140766514 + MER93b LTR ERV1 113 373 0 236 303 40 0 chr4 43522148 43522224 -140766438 - MIR SINE MIR -29 233 155 375 320 98 39 chr4 43522235 43522541 -140766121 + L1ME LINE L1 5360 5683 -438 984 259 9 4 chr4 43522557 43522789 -140765873 + MIR SINE MIR 29 261 -1 237 207 17 112 chr4 43522806 43522922 -140765740 + L1ME LINE L1 5707 5811 -310 1638 63 0 0 chr4 43524058 43524264 -140764398 - L1PA7 LINE L1 -14 6140 5935 232 351 35 35 chr4 43524438 43524609 -140764053 - MIR SINE MIR -1 261 91 5640 80 1 1 chr4 43524729 43525969 -140762693 + L1P3 LINE L1 4580 5819 -335 240 226 97 11 chr4 43526062 43526155 -140762507 - L1ME4a LINE L1 -72 6049 5949 180 329 53 47 chr4 43526276 43526446 -140762216 + MIR SINE MIR 91 261 -1 391 223 97 19 chr4 43526767 43526870 -140761792 + MIR SINE MIR 33 143 -119 550 282 107 48 chr4 43527020 43527229 -140761433 - MLT1L LTR MaLR -165 450 218 2795 89 54 14 chr4 43527229 43527656 -140761006 + MLT2A1 LTR ERVL 1 444 0 550 282 107 48 chr4 43527656 43527737 -140760925 - MLT1L LTR MaLR -397 218 143 1956 305 109 28 chr4 43527971 43529347 -140759315 + L2 LINE L2 1829 3311 -2 197 275 44 44 chr4 43529355 43529446 -140759216 - MIR SINE MIR -93 169 79 315 0 0 0 chr4 43530753 43530788 -140757874 + (A)n Simple_repeat Simple_repeat 1 35 0 192 303 105 13 chr4 43531357 43531433 -140757229 - L2 LINE L2 -1015 2299 2217 444 275 70 112 chr4 43531469 43531727 -140756935 - MIR SINE MIR -14 248 2 1833 233 62 43 chr4 43532828 43533570 -140755092 - L1MC5 LINE L1 -171 7790 7035 195 321 4 4 chr4 43534706 43534792 -140753870 + MIR SINE MIR 56 142 -66 464 279 125 26 chr4 43535761 43536112 -140752550 - L1M4 LINE L1 -2207 3939 3554 12549 198 42 16 chr4 43536411 43539447 -140749215 - L1PA16 LINE L1 -9 6860 3905 243 0 0 0 chr4 43539447 43539474 -140749188 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 12549 198 42 16 chr4 43539474 43539698 -140748964 - L1PA16 LINE L1 -2964 3905 3688 189 0 0 0 chr4 43539698 43539719 -140748943 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 12549 198 42 16 chr4 43539719 43541925 -140746737 - L1PA16 LINE L1 -3181 3688 1254 4878 171 14 2 chr4 43541919 43542772 -140745890 - L1PA16 LINE L1 -5986 863 1 * 483 319 67 38 chr4 43542778 43543092 -140745570 - L1M4 LINE L1 -2945 3201 2879 251 242 15 45 chr4 43544501 43544567 -140744095 + MIR3 SINE MIR 6 69 -139 993 202 30 124 chr4 43544588 43544869 -140743793 + L1MC5 LINE L1 7325 7510 -451 2223 120 13 0 chr4 43544869 43545178 -140743484 + AluSq SINE Alu 1 313 0 993 202 30 124 chr4 43545178 43545559 -140743103 + L1MC5 LINE L1 7510 7925 -36 2261 78 10 0 chr4 43545700 43545994 -140742668 + AluSg SINE Alu 1 297 -13 485 254 87 12 chr4 43546116 43546289 -140742373 + LTR67 LTR ERVL 358 543 -14 449 323 114 9 chr4 43546648 43546868 -140741794 - MIR SINE MIR -18 244 2 2255 78 0 28 chr4 43547038 43547358 -140741304 - AluY SINE Alu 0 311 1 185 317 8 75 chr4 43548227 43548347 -140740315 + L2 LINE L2 3200 3311 -2 420 100 0 0 chr4 43548700 43548760 -140739902 + Alu SINE Alu 232 291 -18 2301 109 29 55 chr4 43549533 43549918 -140738744 + THE1C LTR MaLR 1 375 0 2104 234 4 0 chr4 43549918 43550376 -140738286 - MLT1C LTR MaLR -7 460 1 2755 128 18 87 chr4 43550604 43551205 -140737457 + L1MA7 LINE L1 5732 6291 0 1835 146 6 37 chr4 43552102 43552424 -140736238 + AluSx SINE Alu 1 312 0 820 286 28 0 chr4 43552432 43552649 -140736013 + MIR SINE MIR 24 246 -16 362 276 166 6 chr4 43553753 43553916 -140734746 + MIR SINE MIR 70 258 -4 226 372 0 0 chr4 43554818 43554904 -140733758 - L3 LINE CR1 -157 1420 1335 184 233 23 0 chr4 43554927 43554970 -140733692 - L3b LINE CR1 -2 1581 1538 399 254 0 49 chr4 43555183 43555305 -140733357 - MLT1H LTR MaLR -204 345 230 1620 192 74 42 chr4 43555404 43555836 -140732826 + MLT1C LTR MaLR 22 467 0 184 328 128 15 chr4 43555945 43556140 -140732522 - L3 LINE CR1 -305 1272 1056 325 181 128 53 chr4 43556162 43556295 -140732367 - MLT1L LTR MaLR 0 615 369 793 295 77 0 chr4 43556761 43556995 -140731667 + MIR SINE MIR 11 262 0 236 169 39 65 chr4 43557226 43557303 -140731359 + L1ME4a LINE L1 5981 6055 -66 1742 212 60 50 chr4 43557317 43557817 -140730845 + MLT1D LTR MaLR 1 505 0 270 211 0 13 chr4 43558557 43558633 -140730029 - L1ME4a LINE L1 0 6121 6047 379 288 89 57 chr4 43558680 43558961 -140729701 - L1ME4a LINE L1 -173 5948 5659 432 188 0 0 chr4 43558961 43559046 -140729616 + L1PB4 LINE L1 6070 6154 -2 387 308 102 12 chr4 43559068 43559393 -140729269 - L1ME4a LINE L1 -458 5663 5310 1888 141 52 33 chr4 43559804 43560172 -140728490 + THE1C LTR MaLR 1 375 0 298 267 53 33 chr4 43560725 43560875 -140727787 - MLT1L LTR MaLR -340 275 123 186 322 69 23 chr4 43560974 43561061 -140727601 + L2 LINE L2 3223 3313 0 22 0 0 0 chr4 43561407 43561429 -140727233 + AT_rich Low_complexity Low_complexity 1 22 0 1557 192 178 28 chr4 43561711 43562049 -140726613 + LTR50 LTR ERVL 1 287 -508 2063 151 19 19 chr4 43562049 43562414 -140726248 - MLT1A1 LTR MaLR 0 365 1 1557 192 178 28 chr4 43562414 43562698 -140725964 + LTR50 LTR ERVL 287 768 -27 463 174 0 0 chr4 43563272 43563341 -140725321 + FRAM/FAM SINE Alu 1 65 -111 749 265 96 35 chr4 43563342 43563842 -140724820 - MER41C LTR ERV1 0 557 3 540 161 0 11 chr4 43563842 43563929 -140724733 + FRAM SINE Alu 61 146 -30 309 51 0 0 chr4 43563933 43563972 -140724690 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 201 237 197 0 chr4 43564011 43564087 -140724575 - MIR SINE MIR -35 227 137 2326 98 90 0 chr4 43564141 43564487 -140724175 + MER51B LTR ERV1 1 377 0 371 274 58 89 chr4 43565389 43565681 -140722981 + LTR33A LTR ERVL 3 285 -238 386 183 98 0 chr4 43566395 43566477 -140722185 - MIR SINE MIR -1 261 172 911 267 62 12 chr4 43566479 43566719 -140721943 - MIR SINE MIR -9 253 2 1364 206 38 83 chr4 43567467 43567579 -140721083 - MER63B DNA MER1_type -626 436 321 1995 133 0 16 chr4 43567579 43567888 -140720774 + AluSx SINE Alu 6 309 -3 1364 206 38 83 chr4 43567888 43568222 -140720440 - MER63B DNA MER1_type -741 321 10 198 191 0 0 chr4 43568250 43568297 -140720365 + (CATA)n Simple_repeat Simple_repeat 2 48 0 376 322 119 63 chr4 43570252 43570648 -140718014 - L2 LINE L2 -337 2977 2530 2264 85 0 25 chr4 43570648 43570966 -140717696 + AluSq SINE Alu 1 310 -3 376 322 119 63 chr4 43570966 43571206 -140717456 - L2 LINE L2 -784 2530 2305 1426 245 81 26 chr4 43571893 43572350 -140716312 + MLT1J LTR MaLR 5 486 -25 2072 111 33 23 chr4 43573179 43573486 -140715176 + AluSx SINE Alu 3 312 0 2283 113 3 3 chr4 43574533 43574844 -140713818 - AluSx SINE Alu -1 311 1 303 270 141 87 chr4 43574971 43575156 -140713506 - MER91A DNA MER1_type -1 195 1 21 0 0 0 chr4 43575627 43575648 -140713014 + AT_rich Low_complexity Low_complexity 1 21 0 2727 126 94 97 chr4 43575912 43576627 -140712035 + Tigger3b DNA MER2_type 1 713 -518 41843 43 2 1 chr4 43576629 43582795 -140705867 + L1PA4 LINE L1 1 6176 0 366 171 0 0 chr4 43583161 43583231 -140705431 + T-rich Low_complexity Low_complexity 1 70 0 233 227 0 0 chr4 43583645 43583689 -140704973 + (CA)n Simple_repeat Simple_repeat 2 45 0 519 258 113 48 chr4 43584339 43584568 -140704094 + MIR SINE MIR 18 261 -1 534 307 191 48 chr4 43584675 43585451 -140703211 + L2 LINE L2 1614 2500 -814 761 193 25 109 chr4 43585485 43585699 -140702963 + MER20 DNA MER1_type 2 196 -23 1627 156 50 102 chr4 43585699 43586083 -140702579 + THE1B LTR MaLR 1 364 0 761 193 25 109 chr4 43586083 43586106 -140702556 + MER20 DNA MER1_type 196 219 0 387 286 98 79 chr4 43586110 43586581 -140702081 + L2 LINE L2 2530 3009 -263 988 187 56 0 chr4 43587700 43587898 -140700764 - MER3 DNA MER1_type 0 209 1 1513 300 92 28 chr4 43587919 43588569 -140700093 - MER115 DNA AcHobo 0 693 2 1981 302 157 23 chr4 43588591 43589925 -140698737 + L2 LINE L2 1227 2739 -575 3609 212 133 9 chr4 43589947 43590879 -140697783 + L1PA13 LINE L1 81 1128 -5659 5977 104 6 10 chr4 43590904 43592179 -140696483 + L1PA13 LINE L1 4892 6158 -5 219 324 14 0 chr4 43592254 43592328 -140696334 - L2 LINE L2 -750 2564 2490 * 508 336 199 10 chr4 43592327 43592795 -140695867 + L2 LINE L2 2750 3300 -13 2480 81 0 0 chr4 43594182 43594492 -140694170 + AluY SINE Alu 1 310 -1 384 285 15 65 chr4 43594976 43595192 -140693470 + L1MDa LINE L1 1257 1470 -5060 190 104 21 42 chr4 43595198 43595246 -140693416 + (TATG)n Simple_repeat Simple_repeat 2 48 0 429 149 0 81 chr4 43595397 43595484 -140693178 + MLT1C LTR MaLR 1 80 -285 257 257 101 0 chr4 43595614 43595723 -140692939 + HAL1 LINE L1 1443 1562 -945 * 1671 234 32 82 chr4 43595713 43596338 -140692324 + L1MC/D LINE L1 4465 5120 -1097 2430 146 44 5 chr4 43596338 43596750 -140691912 + MSTA LTR MaLR 1 428 0 7747 161 50 39 chr4 43596752 43598313 -140690349 + MSTA-int LTR MaLR 3 1580 0 2441 133 44 7 chr4 43598313 43598726 -140689936 + MSTA LTR MaLR 1 428 0 1671 234 32 82 chr4 43598726 43599166 -140689496 + L1MC/D LINE L1 5119 5474 -743 839 141 0 15 chr4 43599167 43599302 -140689360 + FLAM_C SINE Alu 1 133 0 21 36 0 0 chr4 43599302 43599330 -140689332 + AT_rich Low_complexity Low_complexity 1 28 0 1523 208 78 40 chr4 43599450 43599849 -140688813 + MLT1C LTR MaLR 53 466 -1 392 267 170 0 chr4 43600061 43600196 -140688466 - MIR SINE MIR -21 241 84 374 350 57 24 chr4 43600200 43600569 -140688093 + L1M4 LINE L1 3749 4129 -2017 2385 71 3 13 chr4 43600614 43600922 -140687740 + AluY SINE Alu 1 305 -6 655 323 104 10 chr4 43601074 43601477 -140687185 + L1M4 LINE L1 4398 4838 -1308 329 318 54 0 chr4 43601647 43601889 -140686773 + L1M4 LINE L1 5068 5322 -824 24 0 0 0 chr4 43603897 43603921 -140684741 + AT_rich Low_complexity Low_complexity 1 24 0 585 243 72 18 chr4 43606399 43606621 -140682041 + L1MC5 LINE L1 7668 7901 -60 7475 40 0 0 chr4 43606630 43608211 -140680451 - L1PA5 LINE L1 -3 6151 4570 10658 38 1 1 chr4 43608211 43609519 -140679143 + L1PA5 LINE L1 3243 4550 -1596 852 156 7 0 chr4 43609544 43609685 -140678977 + LTR47B LTR ERVL 301 442 -1 193 170 57 38 chr4 43609730 43609783 -140678879 + L2 LINE L2 3147 3200 -113 287 391 20 10 chr4 43610125 43610192 -140678470 - MLT1G-int LTR MaLR -888 483 418 2111 130 141 5 chr4 43610192 43610568 -140678094 + MSTA LTR MaLR 2 428 0 287 391 20 10 chr4 43610568 43610697 -140677965 - MLT1G-int LTR MaLR -953 418 285 251 242 15 0 chr4 43610859 43610925 -140677737 - MLT1G LTR MaLR -7 583 517 1086 355 29 12 chr4 43610985 43611464 -140677198 - MERVL LTR ERVL -1318 4336 3850 2449 163 26 5 chr4 43611565 43611982 -140676680 - MSTB LTR MaLR 0 426 1 296 306 62 47 chr4 43612051 43612244 -140676418 - MERVL LTR ERVL -3543 1942 1747 7917 248 41 34 chr4 43612536 43615215 -140673447 + L1PA12 LINE L1 32 2692 -4892 2011 166 54 54 chr4 43615215 43615643 -140673019 - MSTA LTR MaLR 0 428 1 7917 248 41 34 chr4 43615643 43616555 -140672107 + L1PA12 LINE L1 2692 3596 -3988 318 67 0 0 chr4 43616555 43616600 -140672062 + (TG)n Simple_repeat Simple_repeat 2 46 0 312 91 0 0 chr4 43616600 43616644 -140672018 + (CATA)n Simple_repeat Simple_repeat 2 45 0 7917 248 41 34 chr4 43616644 43617580 -140671082 + L1PA12 LINE L1 3595 4848 -2736 844 258 9 9 chr4 43617841 43618054 -140670608 - MER69 DNA AcHobo -939 287 75 198 349 128 0 chr4 43618509 43618618 -140670044 - L2 LINE L2 -2 3311 3189 22 0 0 0 chr4 43618694 43618716 -140669946 + AT_rich Low_complexity Low_complexity 1 22 0 358 332 37 80 chr4 43619274 43619651 -140669011 + L2 LINE L2 2896 3256 -16 21 0 0 0 chr4 43619834 43619855 -140668807 + AT_rich Low_complexity Low_complexity 1 21 0 1075 210 66 68 chr4 43619997 43620363 -140668299 + MLT1A1 LTR MaLR 1 365 0 433 317 152 6 chr4 43620831 43620995 -140667667 - MER5A DNA MER1_type 0 189 2 218 279 82 49 chr4 43622031 43622153 -140666509 + MIR SINE MIR 91 216 -46 549 280 109 0 chr4 43622166 43622341 -140666321 - MIR SINE MIR 0 262 69 21 82 0 0 chr4 43624106 43624155 -140664507 + AT_rich Low_complexity Low_complexity 1 49 0 240 86 0 0 chr4 43624434 43624469 -140664193 + (TG)n Simple_repeat Simple_repeat 2 36 0 1807 163 46 30 chr4 43624574 43624943 -140663719 + THE1C LTR MaLR 1 375 0 352 287 55 25 chr4 43625004 43625206 -140663456 - L1MC4 LINE L1 -1036 7006 6799 22 35 0 0 chr4 43625294 43625323 -140663339 + AT_rich Low_complexity Low_complexity 1 29 0 2523 109 0 11 chr4 43625525 43625892 -140662770 - L1PB1 LINE L1 -7 6144 5782 302 298 12 0 chr4 43625893 43625977 -140662685 + L1MC4 LINE L1 6614 6698 -1344 200 135 0 27 chr4 43626001 43626038 -140662624 + (TA)n Simple_repeat Simple_repeat 2 37 0 260 209 0 15 chr4 43626065 43626132 -140662530 + (TATATG)n Simple_repeat Simple_repeat 3 68 0 236 247 0 0 chr4 43626136 43626209 -140662453 + L1MCa LINE L1 1995 2067 -4359 231 154 0 64 chr4 43626225 43626303 -140662359 + (CATATA)n Simple_repeat Simple_repeat 3 75 0 472 292 73 36 chr4 43626528 43626712 -140661950 + MIR SINE MIR 26 216 -46 693 204 167 0 chr4 43626712 43626874 -140661788 - MER5A DNA MER1_type 0 189 1 278 258 104 121 chr4 43627785 43628025 -140660637 + MIR SINE MIR 3 238 -24 260 225 113 120 chr4 43628482 43628624 -140660038 + MIR SINE MIR 1 142 -66 622 277 70 9 chr4 43629547 43629760 -140658902 + MIR SINE MIR 1 226 -36 924 194 12 0 chr4 43630152 43630317 -140658345 + AluSg/x SINE Alu 133 299 -13 301 262 79 8 chr4 43630692 43630818 -140657844 + MIR SINE MIR 128 262 0 423 297 105 14 chr4 43631435 43631803 -140656859 - L1ME3A LINE L1 -294 5876 5457 2036 78 9 96 chr4 43631964 43632298 -140656364 - AluSc SINE Alu 0 309 5 5709 175 22 13 chr4 43633821 43634933 -140653729 + L1P LINE L1 3111 4233 -1913 22 0 0 0 chr4 43635699 43635721 -140652941 + AT_rich Low_complexity Low_complexity 1 22 0 255 130 26 130 chr4 43635960 43636037 -140652625 + MLT1L LTR MaLR 7 75 -540 454 84 24 60 chr4 43636057 43636110 -140652552 - MADE1 DNA Mariner 0 80 30 2789 192 32 68 chr4 43636110 43636825 -140651837 + LTR8 LTR ERV1 3 691 0 454 84 24 60 chr4 43636825 43636854 -140651808 - MADE1 DNA Mariner -50 30 1 672 299 57 7 chr4 43636860 43637141 -140651521 + MLT1L LTR MaLR 97 391 -224 2566 157 14 0 chr4 43638092 43638520 -140650142 - MER57B LTR ERV1 0 434 1 1507 111 128 0 chr4 43638521 43638755 -140649907 - MER57B-int LTR ERV1 -2 7535 7272 781 114 24 8 chr4 43638755 43638878 -140649784 - LTR54B LTR ERV1 -371 127 3 11938 109 42 3 chr4 43638878 43640652 -140648010 - MER57B-int LTR ERV1 -388 7149 5307 5746 139 56 27 chr4 43640643 43642308 -140646354 - MER57B-int LTR ERV1 -1720 4273 2186 * 267 157 59 0 chr4 43642304 43642355 -140646307 - MER57B-int LTR ERV1 -3726 2220 2167 * 898 125 54 8 chr4 43642331 43642498 -140646164 - MER57B-int LTR ERV1 -3932 2014 1505 * 1759 185 92 3 chr4 43642489 43642857 -140645805 - MER57B-int LTR ERV1 -4175 1771 1371 1315 154 5 0 chr4 43642847 43643055 -140645607 - MER57B-int LTR ERV1 -5779 1758 1550 * 3405 128 61 0 chr4 43643038 43643577 -140645085 - MER57B-int LTR ERV1 -5087 859 288 * 4250 130 18 5 chr4 43643574 43644237 -140644425 - MER57B-int LTR ERV1 -6865 672 1 2758 134 7 2 chr4 43644237 43644669 -140643993 - MER57B LTR ERV1 0 434 1 900 197 27 11 chr4 43645063 43645246 -140643416 + MER5A DNA MER1_type 4 189 0 254 316 53 18 chr4 43645275 43645389 -140643273 + MIR SINE MIR 3 120 -142 856 225 98 41 chr4 43645624 43645868 -140642794 - MIR SINE MIR 0 262 5 2082 201 181 2 chr4 43647770 43648412 -140640250 + L1MC4 LINE L1 7281 8037 -5 27 29 0 0 chr4 43650398 43650432 -140638230 + AT_rich Low_complexity Low_complexity 1 34 0 194 311 113 9 chr4 43650515 43650621 -140638041 + L2 LINE L2 2623 2739 -575 401 241 28 28 chr4 43651039 43651184 -140637478 + MLT1J LTR MaLR 3 147 -364 450 230 155 29 chr4 43651275 43651449 -140637213 + MLT1J LTR MaLR 300 495 -16 1690 156 7 0 chr4 43651846 43652116 -140636546 + AluSx SINE Alu 5 276 -36 780 251 16 5 chr4 43652167 43652354 -140636308 - MIR SINE MIR -67 195 7 292 328 25 25 chr4 43652359 43652478 -140636184 - MIR3 SINE MIR -87 121 3 2303 110 0 0 chr4 43653852 43654151 -140634511 - AluSc SINE Alu -6 303 5 754 238 17 6 chr4 43704151 43704323 -140584339 + MLT1D LTR MaLR 332 505 0 1993 102 30 36 chr4 43704357 43704660 -140584002 + AluSc SINE Alu 1 301 -8 474 282 15 30 chr4 43704786 43704917 -140583745 + MIR SINE MIR 45 173 -89 209 355 27 0 chr4 43705979 43706089 -140582573 - MIR SINE MIR -72 190 78 302 175 0 0 chr4 43706090 43706147 -140582515 - MLT2B1 LTR ERVL 0 520 464 454 245 0 0 chr4 43706230 43706328 -140582334 - MLT2B1 LTR ERVL -44 476 379 27792 52 3 6 chr4 43706428 43710863 -140577799 + L1PA3 LINE L1 1733 6154 -1 332 276 94 8 chr4 43710863 43710990 -140577672 - LTR33A LTR ERVL -24 499 362 385 239 72 94 chr4 43711096 43711276 -140577386 - LTR33A LTR ERVL -341 182 7 989 215 39 0 chr4 43711664 43711869 -140576793 - MER58A DNA MER1_type -5 219 7 589 270 162 5 chr4 43711968 43712153 -140576509 + MIR SINE MIR 28 241 -21 267 79 0 0 chr4 43712493 43712531 -140576131 + (TA)n Simple_repeat Simple_repeat 1 38 0 294 276 115 45 chr4 43712813 43712969 -140575693 - MIR3 SINE MIR -40 168 2 204 67 0 0 chr4 43713326 43713356 -140575306 + (TA)n Simple_repeat Simple_repeat 1 30 0 27 29 0 0 chr4 43713456 43713490 -140575172 + AT_rich Low_complexity Low_complexity 1 34 0 344 261 0 22 chr4 43713490 43713582 -140575080 + L1MC4 LINE L1 6614 6703 -1339 261 0 0 0 chr4 43713582 43713611 -140575051 + (TA)n Simple_repeat Simple_repeat 1 29 0 1262 107 6 0 chr4 43713618 43713786 -140574876 + AluSq SINE Alu 1 169 -144 203 165 33 11 chr4 43713820 43713911 -140574751 + (TA)n Simple_repeat Simple_repeat 1 93 0 206 118 0 0 chr4 43713919 43713953 -140574709 + (CA)n Simple_repeat Simple_repeat 2 35 0 922 40 0 151 chr4 43714310 43714462 -140574200 + AluY SINE Alu 163 291 -20 234 220 0 0 chr4 43715843 43715902 -140572760 + (TG)n Simple_repeat Simple_repeat 2 60 0 22 0 0 0 chr4 43716171 43716193 -140572469 + AT_rich Low_complexity Low_complexity 1 22 0 582 254 16 38 chr4 43716967 43717152 -140571510 - MER112 DNA MER1_type 0 260 80 2052 158 2 56 chr4 43717168 43717224 -140571438 + MLT1B LTR MaLR 1 58 -332 2069 133 42 33 chr4 43717224 43717585 -140571077 + THE1B LTR MaLR 1 364 0 2052 158 2 56 chr4 43717585 43717940 -140570722 + MLT1B LTR MaLR 58 390 0 1961 101 0 0 chr4 43718998 43719274 -140569388 + L1PA13 LINE L1 5877 6152 -11 27 29 0 0 chr4 43719569 43719603 -140569059 + AT_rich Low_complexity Low_complexity 1 34 0 286 83 104 0 chr4 43719978 43720026 -140568636 - MLT2B2 LTR ERVL -462 53 1 2224 111 29 14 chr4 43720177 43720528 -140568134 - L1P4 LINE L1 -456 5712 5357 724 285 35 18 chr4 43720815 43721043 -140567619 - LTR16A1 LTR ERVL -213 244 13 1439 253 129 21 chr4 43721776 43722250 -140566412 + MLT1G1 LTR MaLR 19 543 -52 404 309 67 26 chr4 43722428 43722622 -140566040 - MIR SINE MIR 0 262 61 377 312 186 21 chr4 43722661 43722940 -140565722 - L2 LINE L2 -15 3298 2974 314 273 45 53 chr4 43723046 43723178 -140565484 + MIR SINE MIR 20 150 -112 24 0 0 0 chr4 43723265 43723289 -140565373 + AT_rich Low_complexity Low_complexity 1 24 0 364 247 22 11 chr4 43723740 43723829 -140564833 + MIR SINE MIR 27 116 -92 244 302 127 75 chr4 43724090 43724302 -140564360 + MIR SINE MIR 7 229 -33 291 327 47 0 chr4 43725324 43725431 -140563231 - MER91C DNA MER1_type -12 128 17 329 339 82 92 chr4 43725455 43726014 -140562648 + L2 LINE L2 2694 3232 -40 4417 138 27 7 chr4 43726054 43726798 -140561864 - L1M1 LINE L1 -4933 2632 1874 231 180 66 66 chr4 43726809 43726870 -140561792 + LTR43 LTR ERV1 526 586 -16 3292 187 41 28 chr4 43726886 43727999 -140560663 + L1MA9 LINE L1 4823 5959 -353 547 264 23 17 chr4 43728164 43728338 -140560324 - MER5B DNA MER1_type -3 175 1 410 213 35 92 chr4 43729051 43729192 -140559470 - MIR SINE MIR -70 192 60 3232 106 2 0 chr4 43729231 43729695 -140558967 - L1PA10 LINE L1 -4 6164 5700 425 351 63 25 chr4 43729712 43730031 -140558631 + MER102b DNA MER1_type 6 336 -5 24 32 0 0 chr4 43731072 43731103 -140557559 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr4 43731856 43731884 -140556778 + AT_rich Low_complexity Low_complexity 1 28 0 237 259 0 0 chr4 43732596 43732654 -140556008 + (TAA)n Simple_repeat Simple_repeat 2 59 0 752 259 132 4 chr4 43732726 43732954 -140555708 + MIR SINE MIR 5 261 -1 287 280 136 25 chr4 43732949 43733067 -140555595 - MIR SINE MIR -112 150 20 * 232 337 50 20 chr4 43733082 43733183 -140555479 + L2 LINE L2 3210 3313 0 204 310 0 0 chr4 43734113 43734184 -140554478 + GA-rich Low_complexity Low_complexity 1 71 0 2054 182 14 19 chr4 43735063 43735802 -140552860 - L1MC/D LINE L1 -743 5403 4787 2416 278 53 19 chr4 43735850 43736702 -140551960 - L1MEc LINE L1 -5385 1011 131 307 314 16 83 chr4 43736964 43737134 -140551528 - MLT1J LTR MaLR -141 474 215 25 0 0 0 chr4 43737515 43737540 -140551122 + AT_rich Low_complexity Low_complexity 1 25 0 1536 163 68 102 chr4 43737704 43738147 -140550515 - MSTA LTR MaLR 0 428 1 9050 144 20 38 chr4 43738147 43739753 -140548909 - MSTA-int LTR MaLR 0 1580 3 1667 168 125 33 chr4 43739755 43740147 -140548515 - MSTA LTR MaLR 0 428 1 993 200 15 5 chr4 43740309 43740504 -140548158 - AluJb SINE Alu -34 278 82 359 310 52 61 chr4 43740983 43741196 -140547466 - MIR SINE MIR -34 228 18 264 315 72 0 chr4 43742184 43742295 -140546367 + MIR SINE MIR 139 257 -5 3730 129 20 10 chr4 43742404 43743001 -140545661 - LTR26 LTR ERV1 0 603 1 510 137 63 0 chr4 43743312 43743407 -140545255 - MER49 LTR ERV1 -685 238 138 1192 166 0 5 chr4 43743407 43743600 -140545062 - LOR1-int LTR ERV1 -1100 7020 6829 1100 119 38 136 chr4 43743621 43743857 -140544805 - LOR1-int LTR ERV1 -4122 3998 3786 484 267 20 22 chr4 43744838 43745028 -140543634 - L1ME3A LINE L1 -5 6165 5985 5065 162 22 17 chr4 43745069 43746049 -140542613 - L1MA8 LINE L1 0 7710 6726 3904 198 18 14 chr4 43746157 43747027 -140541635 - L1MA8 LINE L1 -1075 6490 5617 2009 141 16 56 chr4 43747027 43747404 -140541258 + THE1C LTR MaLR 1 362 -13 5236 173 63 30 chr4 43747405 43748678 -140539984 - L1MA8 LINE L1 -1947 5618 4304 3411 242 25 53 chr4 43748829 43749576 -140539086 - L1MA8 LINE L1 -4291 3274 2508 7814 16 1 0 chr4 43749576 43751198 -140537464 - L1PA2 LINE L1 -1 6154 4532 3411 242 25 53 chr4 43751198 43751350 -140537312 - L1MA8 LINE L1 -5057 2508 2353 2106 144 0 0 chr4 43751350 43751656 -140537006 - AluSx SINE Alu -6 306 1 3411 242 25 53 chr4 43751656 43752071 -140536591 - L1MA8 LINE L1 -5212 2353 1996 1742 251 96 55 chr4 43752114 43752751 -140535911 - L1MA8 LINE L1 -6361 1128 466 32 0 0 0 chr4 43753147 43753179 -140535483 + AT_rich Low_complexity Low_complexity 1 32 0 192 245 0 19 chr4 43753950 43754003 -140534659 + MIR3 SINE MIR 107 158 -50 312 27 0 0 chr4 43754517 43754554 -140534108 + (TG)n Simple_repeat Simple_repeat 2 38 0 453 0 78 0 chr4 43754722 43754799 -140533863 + (TA)n Simple_repeat Simple_repeat 1 83 0 267 31 0 0 chr4 43754798 43754830 -140533832 + (GA)n Simple_repeat Simple_repeat 2 33 0 * 1432 187 12 12 chr4 43754830 43755076 -140533586 - AluJo SINE Alu -39 273 28 21 0 0 0 chr4 43755874 43755895 -140532767 + AT_rich Low_complexity Low_complexity 1 21 0 1032 205 114 24 chr4 43756653 43756907 -140531755 - MLT1B LTR MaLR 0 390 114 30 45 0 0 chr4 43757695 43757739 -140530923 + AT_rich Low_complexity Low_complexity 1 44 0 183 156 0 0 chr4 43757755 43757787 -140530875 + (CATATA)n Simple_repeat Simple_repeat 5 36 0 228 135 39 39 chr4 43758033 43758085 -140530577 - MER106B DNA MER1_type -113 946 895 * 357 154 0 103 chr4 43758080 43758158 -140530504 - MER106A DNA MER1_type -163 73 4 223 229 14 43 chr4 43759361 43759431 -140529231 + CT-rich Low_complexity Low_complexity 1 68 0 2236 158 0 6 chr4 43759724 43760079 -140528583 - MER47A DNA MER2_type 0 366 14 221 294 25 157 chr4 43760873 43761070 -140527592 - L2 LINE L2 -112 3160 2990 2444 70 20 0 chr4 43763037 43763338 -140525324 + AluY SINE Alu 1 307 -4 2582 192 18 3 chr4 43763339 43763907 -140524755 + L1 LINE L1 3088 3663 -2483 907 224 113 39 chr4 43763904 43764118 -140524544 - L1MC4 LINE L1 -1212 6830 6581 * 1385 191 0 84 chr4 43764118 43764438 -140524224 - AluJo SINE Alu -19 293 1 907 224 113 39 chr4 43764438 43764558 -140524104 - L1MC4 LINE L1 -1461 6581 6471 228 269 143 34 chr4 43765047 43765166 -140523496 - MIR3 SINE MIR -8 200 69 2107 125 3 0 chr4 43765354 43765642 -140523020 - AluSp SINE Alu -24 289 1 430 236 89 16 chr4 43765710 43765833 -140522829 - MIR SINE MIR -124 138 7 691 200 89 0 chr4 43766852 43766987 -140521675 + Tigger3(Golem) DNA MER2_type 1 147 -2882 340 250 0 0 chr4 43766968 43767052 -140521610 + Tigger3(Golem) DNA MER2_type 2269 2352 -677 * 1126 188 23 9 chr4 43767068 43767286 -140521376 + AluJo SINE Alu 87 307 -5 3372 134 73 8 chr4 43767291 43767890 -140520772 + Tigger3(Golem) DNA MER2_type 2390 3027 -2 25 0 0 0 chr4 43768701 43768726 -140519936 + AT_rich Low_complexity Low_complexity 1 25 0 252 280 13 40 chr4 43768962 43769037 -140519625 + L2 LINE L2 3233 3305 -8 2357 94 0 0 chr4 43769812 43770109 -140518553 - AluSx SINE Alu -10 302 6 358 327 147 6 chr4 43770291 43770447 -140518215 + L2 LINE L2 3095 3272 0 1803 108 97 0 chr4 43770529 43770821 -140517841 + AluSq SINE Alu 1 317 0 257 315 82 131 chr4 43770887 43771145 -140517517 - L2 LINE L2 -14 3258 3024 1999 121 24 3 chr4 43771145 43771435 -140517227 + AluSc SINE Alu 5 300 -9 257 315 82 131 chr4 43771435 43771566 -140517096 - L2 LINE L2 -248 3024 2888 23 0 0 0 chr4 43771713 43771736 -140516926 + AT_rich Low_complexity Low_complexity 1 23 0 251 224 17 0 chr4 43772256 43772314 -140516348 + MIR SINE MIR 183 241 -21 504 262 37 45 chr4 43772673 43772917 -140515745 - LTR38 LTR ERV1 -26 530 289 2760 160 48 14 chr4 43772921 43773619 -140515043 + LTR1B LTR ERV1 1 826 0 1339 116 39 138 chr4 43773622 43773983 -140514679 - LTR38B LTR ERV1 -285 325 1 14363 155 3 10 chr4 43774666 43776976 -140511686 + HERVI LTR ERV1 5466 7758 -27 3691 65 18 12 chr4 43777005 43777515 -140511147 + LTR10D LTR ERV1 1 513 0 1835 193 9 6 chr4 43777687 43778024 -140510638 - MLT1A1 LTR MaLR 0 365 28 1760 136 8 84 chr4 43778072 43778446 -140510216 - MER4A LTR ERV1 0 664 261 486 144 89 0 chr4 43778446 43778536 -140510126 - MER4A LTR ERV1 -566 98 1 15567 122 57 36 chr4 43778543 43780705 -140507957 - MER4A-int LTR ERV1 -1 6597 4481 2053 131 0 0 chr4 43780705 43781013 -140507649 + AluSg SINE Alu 5 312 0 15567 122 57 36 chr4 43781013 43781825 -140506837 - MER4A-int LTR ERV1 -2117 4481 3687 2438 82 3 0 chr4 43781825 43782131 -140506531 + AluY SINE Alu 2 308 -3 15567 122 57 36 chr4 43782131 43782358 -140506304 - MER4A-int LTR ERV1 -2911 3687 1862 1229 175 98 0 chr4 43782358 43782592 -140506070 + LTR8 LTR ERV1 1 257 -434 3964 87 62 45 chr4 43782592 43783305 -140505357 - MER4A-int LTR ERV1 -4103 2495 1771 1495 91 12 169 chr4 43783303 43783669 -140504993 - MER4A-int LTR ERV1 -4266 1284 503 * 2799 100 136 64 chr4 43783637 43784123 -140504539 - MER4A-int LTR ERV1 -5997 601 68 6205 58 12 10 chr4 43784123 43784902 -140503760 + LTR17 LTR ERV1 1 780 0 2799 100 136 64 chr4 43784902 43784976 -140503686 - MER4A-int LTR ERV1 -6530 68 1 1351 161 27 0 chr4 43784979 43785202 -140503460 - MER4A LTR ERV1 0 664 436 3841 177 43 7 chr4 43785203 43786405 -140502257 - L1P4 LINE L1 -515 5651 4406 343 328 78 14 chr4 43786705 43786877 -140501785 + MIR SINE MIR 13 191 -61 275 221 33 25 chr4 43787559 43787648 -140501014 - MIR SINE MIR -71 191 103 797 264 73 12 chr4 43787673 43788162 -140500500 - L1M4 LINE L1 -1462 4684 4160 2619 208 12 2 chr4 43788171 43788670 -140499992 + MER82 DNA MER2_type 1 504 -149 244 193 11 45 chr4 43788874 43788962 -140499700 + L1MC4 LINE L1 6608 6692 -1350 213 196 0 0 chr4 43788969 43789020 -140499642 + (TATG)n Simple_repeat Simple_repeat 1 51 0 588 206 174 28 chr4 43790098 43790345 -140498317 - L1M4 LINE L1 -801 5345 5063 * 1396 241 58 44 chr4 43790328 43790829 -140497833 + L1ME1 LINE L1 5643 6150 -16 225 281 16 0 chr4 43791034 43791101 -140497561 + (TATATG)n Simple_repeat Simple_repeat 1 68 0 2472 82 0 0 chr4 43793092 43793398 -140495264 + AluY SINE Alu 1 306 -5 190 313 107 36 chr4 43793746 43793858 -140494804 - MIR SINE MIR -66 142 23 27 0 0 0 chr4 43794152 43794179 -140494483 + AT_rich Low_complexity Low_complexity 1 27 0 183 42 0 0 chr4 43794626 43794650 -140494012 + (TG)n Simple_repeat Simple_repeat 1 24 0 15143 66 1 3 chr4 43794863 43796903 -140491759 + L1P LINE L1 1 2035 -4111 39 50 0 0 chr4 43797057 43797117 -140491545 + AT_rich Low_complexity Low_complexity 1 60 0 23 33 0 0 chr4 43797363 43797393 -140491269 + AT_rich Low_complexity Low_complexity 1 30 0 2657 178 27 25 chr4 43797711 43798268 -140490394 + MER74A LTR ERVL 1 558 0 336 331 36 14 chr4 43798339 43798478 -140490184 - MIR SINE MIR -95 167 26 2489 180 42 31 chr4 43800216 43800475 -140488187 + MER44D DNA MER2_type 1 256 -2231 2226 110 7 0 chr4 43800475 43800774 -140487888 + AluSc SINE Alu 5 305 -4 2489 180 42 31 chr4 43800774 43801058 -140487604 + MER44D DNA MER2_type 256 605 0 1229 146 5 41 chr4 43801193 43801412 -140487250 - AluSg/x SINE Alu -5 307 97 3561 185 28 86 chr4 43801907 43802935 -140485727 - LTR5 LTR ERVK 0 969 1 1479 195 136 16 chr4 43803122 43803491 -140485171 + MSTA LTR MaLR 1 413 -15 737 62 0 0 chr4 43803491 43803587 -140485075 + L1PA4 LINE L1 6057 6152 -3 9361 139 14 35 chr4 43803625 43805236 -140483426 + MSTA-int LTR MaLR 3 1580 0 1861 143 135 23 chr4 43805236 43805621 -140483041 + MSTA LTR MaLR 1 428 0 220 358 12 0 chr4 43806097 43806178 -140482484 - L2 LINE L2 -5 3267 3186 8669 61 2 2 chr4 43806193 43807264 -140481398 + MER11C LTR ERVK 1 1071 0 784 321 97 52 chr4 43807517 43808031 -140480631 - L2 LINE L2 -366 2948 2412 203 268 52 31 chr4 43808858 43808955 -140479707 - MIR SINE MIR -13 249 151 306 279 34 101 chr4 43809007 43809186 -140479476 + MIR SINE MIR 47 213 -49 22 0 0 0 chr4 43809619 43809641 -140479021 + AT_rich Low_complexity Low_complexity 1 22 0 1725 189 9 9 chr4 43809753 43810113 -140478549 - MLT1A1 LTR MaLR 0 365 1 228 194 16 16 chr4 43810117 43810179 -140478483 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 472 287 40 49 chr4 43810367 43810409 -140478253 - MLT1J LTR MaLR -268 243 202 2250 92 0 3 chr4 43810409 43810692 -140477970 + AluSq SINE Alu 17 298 -15 472 287 40 49 chr4 43810692 43810872 -140477790 - MLT1J LTR MaLR -309 202 23 541 252 107 0 chr4 43811123 43811282 -140477380 - MIR SINE MIR -30 232 57 676 274 140 25 chr4 43811620 43811941 -140476721 + LTR33 LTR ERVL 162 519 -2 632 274 81 0 chr4 43812845 43813042 -140475620 - MIR SINE MIR -2 260 48 23 33 0 0 chr4 43813042 43813072 -140475590 + AT_rich Low_complexity Low_complexity 1 30 0 2971 209 94 5 chr4 43813120 43813915 -140474747 + L1PA14 LINE L1 5291 6156 -5 239 192 39 0 chr4 43814666 43814718 -140473944 - L2 LINE L2 -11 3261 3208 322 395 8 41 chr4 43815196 43815439 -140473223 - L2 LINE L2 -159 3113 2879 199 263 0 35 chr4 43815486 43815543 -140473119 - L2 LINE L2 -496 2818 2764 25 0 0 0 chr4 43816022 43816047 -140472615 + AT_rich Low_complexity Low_complexity 1 25 0 227 190 17 0 chr4 43816048 43816106 -140472556 + (TA)n Simple_repeat Simple_repeat 1 59 0 296 301 45 45 chr4 43816827 43816899 -140471763 + L2 LINE L2 3158 3229 -84 285 75 0 0 chr4 43816899 43816939 -140471723 + (TG)n Simple_repeat Simple_repeat 1 40 0 296 301 45 45 chr4 43816939 43817022 -140471640 + L2 LINE L2 3228 3313 0 348 336 37 65 chr4 43817607 43817835 -140470827 + MIR SINE MIR 1 222 -40 230 283 97 80 chr4 43819382 43819682 -140468980 + L2 LINE L2 2998 3302 -11 318 341 11 0 chr4 43819716 43819807 -140468855 - L2 LINE L2 -14 3258 3167 308 287 74 25 chr4 43819963 43820085 -140468577 + MIR SINE MIR 12 139 -123 331 274 43 8 chr4 43821261 43821378 -140467284 + MER94 DNA DNA 12 132 -2 329 211 99 0 chr4 43821793 43821864 -140466798 - L2 LINE L2 0 3313 3236 345 302 54 27 chr4 43822150 43822299 -140466363 + MIR3 SINE MIR 31 183 -25 307 323 43 49 chr4 43822460 43822624 -140466038 - L1M4 LINE L1 -1331 4815 4653 202 269 0 0 chr4 43822740 43822792 -140465870 - MIR SINE MIR -114 148 97 679 300 53 21 chr4 43823099 43823342 -140465320 - MIR SINE MIR -10 252 2 379 331 43 0 chr4 43823897 43824036 -140464626 + L2 LINE L2 3128 3272 0 22 0 0 0 chr4 43824104 43824126 -140464536 + AT_rich Low_complexity Low_complexity 1 22 0 443 217 87 17 chr4 43825570 43825685 -140462977 + L2 LINE L2 3191 3313 0 2526 47 0 0 chr4 43825968 43826266 -140462396 + AluY SINE Alu 1 298 -13 233 234 131 65 chr4 43826983 43827090 -140461572 + MIR SINE MIR 70 183 -79 460 214 10 0 chr4 43827432 43827530 -140461132 - MIR SINE MIR 0 262 164 2178 115 3 14 chr4 43828103 43828399 -140460263 + AluSx SINE Alu 3 295 -17 694 142 15 0 chr4 43828493 43828627 -140460035 - MER53 DNA DNA -3 186 51 204 125 0 0 chr4 43828728 43828760 -140459902 + (CATATA)n Simple_repeat Simple_repeat 2 33 0 200 433 48 0 chr4 43829073 43829260 -140459402 - L2 LINE L2 -225 3047 2852 228 182 0 0 chr4 43829541 43829585 -140459077 + A-rich Low_complexity Low_complexity 1 44 0 2202 102 10 0 chr4 43829705 43830009 -140458653 - AluSq SINE Alu -6 307 1 23 0 0 0 chr4 43830109 43830132 -140458530 + AT_rich Low_complexity Low_complexity 1 23 0 361 210 94 17 chr4 43830166 43830347 -140458315 + MER113 DNA MER1_type? 17 211 -310 604 236 69 64 chr4 43831325 43831528 -140457134 + MIR SINE MIR 31 234 -28 1687 182 30 57 chr4 43831617 43832018 -140456644 + MLT1B LTR MaLR 1 390 0 497 206 52 7 chr4 43833094 43833230 -140455432 - MER63 DNA MER1_type 0 1062 921 900 223 47 39 chr4 43833238 43833597 -140455065 - Charlie2a DNA MER1_type -1108 1754 1393 15496 160 43 40 chr4 43833598 43835313 -140453349 + L1M1 LINE L1 17 1725 -5840 704 79 0 0 chr4 43835313 43835414 -140453248 + AluY SINE Alu 211 311 0 15496 160 43 40 chr4 43835414 43836466 -140452196 + L1M1 LINE L1 1725 2898 -4667 369 0 0 0 chr4 43836466 43836507 -140452155 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 15496 160 43 40 chr4 43836507 43836860 -140451802 + L1M1 LINE L1 2898 3248 -4317 206 274 16 0 chr4 43837473 43837535 -140451127 + (TG)n Simple_repeat Simple_repeat 2 64 0 21 0 0 0 chr4 43838783 43838804 -140449858 + AT_rich Low_complexity Low_complexity 1 21 0 327 231 0 0 chr4 43838882 43838947 -140449715 - L2 LINE L2 0 3313 3249 252 0 0 0 chr4 43839338 43839366 -140449296 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 251 0 0 0 chr4 43839370 43839402 -140449260 - L1PA14 LINE L1 -24 6137 6106 2089 111 4 0 chr4 43839812 43840115 -140448547 + AluY SINE Alu 1 304 0 330 361 42 37 chr4 43840154 43840370 -140448292 - L2 LINE L2 -179 3093 2877 385 331 6 17 chr4 43840609 43840784 -140447878 + L1ME LINE L1 256 428 -5642 807 256 84 34 chr4 43840961 43841780 -140446882 + L1ME LINE L1 3953 4885 -1195 585 223 0 23 chr4 43841816 43841946 -140446716 + MER20 DNA MER1_type 93 219 0 1099 199 87 46 chr4 43842037 43842534 -140446128 + L1ME LINE L1 5069 5599 -499 2093 137 22 28 chr4 43842535 43842899 -140445763 + THE1B LTR MaLR 3 364 0 11086 98 34 3 chr4 43842899 43844432 -140444230 + THE1B-int LTR MaLR 1 1580 0 2005 150 19 25 chr4 43844432 43844798 -140443864 + THE1B LTR MaLR 1 364 0 29 28 0 0 chr4 43845052 43845088 -140443574 + AT_rich Low_complexity Low_complexity 1 36 0 189 267 35 78 chr4 43845316 43845432 -140443230 + MIR SINE MIR 102 212 -50 203 242 99 77 chr4 43845575 43845666 -140442996 - MIR3 SINE MIR -28 180 88 675 292 65 0 chr4 43848588 43848804 -140439858 + MIR SINE MIR 3 232 -30 796 336 69 24 chr4 43848993 43849620 -140439042 + ERVL LTR ERVL 4716 5370 -394 6849 231 39 36 chr4 43850212 43851881 -140436781 + L1 LINE L1 2251 3957 -2189 1122 156 0 0 chr4 43851881 43852048 -140436614 + AluSg/x SINE Alu 131 297 -15 6849 231 39 36 chr4 43852048 43852763 -140435899 + L1 LINE L1 3957 4668 -1478 429 88 0 0 chr4 43852757 43852825 -140435837 + L1MA1 LINE L1 5296 5363 -939 * 2388 101 6 37 chr4 43852883 43853238 -140435424 - THE1A LTR MaLR -11 344 1 11191 103 7 14 chr4 43853238 43854829 -140433833 - THE1A-int LTR MaLR 0 1580 1 2711 66 20 0 chr4 43854829 43855177 -140433485 - THE1A LTR MaLR 0 355 1 6629 98 2 4 chr4 43855177 43856122 -140432540 + L1MA1 LINE L1 5360 6302 0 31 92 0 0 chr4 43856215 43856302 -140432360 + AT_rich Low_complexity Low_complexity 1 87 0 1423 217 78 52 chr4 43856336 43856760 -140431902 - MLT1C LTR MaLR -32 435 1 1390 297 104 15 chr4 43856813 43857776 -140430886 - Charlie2a DNA MER1_type -1698 1164 65 193 245 0 0 chr4 43858376 43858425 -140430237 + L2 LINE L2 3262 3310 -3 550 287 62 39 chr4 43858802 43859109 -140429553 + L2 LINE L2 2326 2639 -675 427 280 36 80 chr4 43859123 43859348 -140429314 + L2 LINE L2 3075 3289 -24 2045 140 36 0 chr4 43859357 43859715 -140428947 + L1MA4 LINE L1 5927 6297 -3 378 365 121 30 chr4 43859771 43860406 -140428256 - L2 LINE L2 -550 2764 2072 276 217 72 24 chr4 43860733 43860816 -140427846 + MLT1H LTR MaLR 1 87 -462 3820 158 34 16 chr4 43861267 43862012 -140426650 - L1MA10 LINE L1 -7 6327 5570 801 178 44 11 chr4 43862012 43862192 -140426470 + L1M3 LINE L1 5044 5229 -917 2847 121 30 5 chr4 43862203 43862641 -140426021 - L1PA14 LINE L1 -2 6159 5711 492 82 0 0 chr4 43862737 43862810 -140425852 - L1PA7 LINE L1 -3 6151 6079 1404 167 15 62 chr4 43862810 43863216 -140425446 + L1M3 LINE L1 5216 5583 -585 299 293 90 8 chr4 43863378 43863511 -140425151 - MARNA DNA Mariner -45 541 398 297 356 58 6 chr4 43863390 43863564 -140425098 + MARNA DNA Mariner 58 240 -346 * 1872 183 91 57 chr4 43863610 43864103 -140424559 + MER67D LTR ERV1 1 510 -4 1662 165 8 0 chr4 43864264 43864530 -140424132 + AluSx SINE Alu 1 268 -44 2380 89 0 0 chr4 43865957 43866261 -140422401 + AluSg SINE Alu 1 304 -6 395 206 14 0 chr4 43866437 43866510 -140422152 - MER5A DNA MER1_type -83 106 33 200 324 49 49 chr4 43866526 43866628 -140422034 + MIR3 SINE MIR 12 113 -95 596 287 58 27 chr4 43867494 43867717 -140420945 + MIR SINE MIR 31 260 -2 2204 172 31 17 chr4 43868516 43868935 -140419727 + MSTB LTR MaLR 1 425 -1 223 316 13 13 chr4 43869136 43869212 -140419450 + L2 LINE L2 3234 3309 -4 23 68 0 0 chr4 43869493 43869537 -140419125 + AT_rich Low_complexity Low_complexity 1 44 0 1928 166 14 6 chr4 43869642 43869997 -140418665 - MER46B DNA MER2_type 0 236 4 1249 25 13 6 chr4 43870904 43871061 -140417601 - L1PA4 LINE L1 -2 6153 5996 2275 103 0 6 chr4 43874231 43874543 -140414119 + AluY SINE Alu 1 310 -1 304 325 97 13 chr4 43875010 43875164 -140413498 - MLT2E LTR ERVL -420 208 42 234 0 0 0 chr4 43876646 43876672 -140411990 + (CA)n Simple_repeat Simple_repeat 1 26 0 1473 211 116 6 chr4 43877410 43877765 -140410897 + MSTD LTR MaLR 1 394 -2 2008 134 5 102 chr4 43877810 43878119 -140410543 + MER47A DNA MER2_type 1 264 -2059 1650 171 35 3 chr4 43878119 43878405 -140410257 - AluJb SINE Alu -17 295 1 2008 134 5 102 chr4 43878405 43878499 -140410163 + MER47A DNA MER2_type 264 365 -1 5734 269 62 24 chr4 43878499 43880123 -140408539 + MSTD-int LTR MaLR 38 1722 -13 1817 209 29 13 chr4 43880124 43880501 -140408161 + MSTD LTR MaLR 11 393 -3 25 31 0 0 chr4 43880678 43880710 -140407952 + AT_rich Low_complexity Low_complexity 1 32 0 1257 271 22 35 chr4 43880955 43881409 -140407253 - L1ME2 LINE L1 -2 6162 5715 3208 243 113 9 chr4 43881494 43882478 -140406184 - L1MC4 LINE L1 -143 7899 6814 * 19627 178 30 15 chr4 43882476 43886618 -140402044 + L1M1 LINE L1 17 4219 -3346 822 189 5 28 chr4 43986637 43986693 -140301969 + (TCCA)n Simple_repeat Simple_repeat 1 57 -599 2341 62 17 0 chr4 43986693 43986983 -140301679 - AluY SINE Alu -16 295 1 822 189 5 28 chr4 43986983 43987309 -140301353 + (TCCA)n Simple_repeat Simple_repeat 57 656 0 252 219 16 16 chr4 43988925 43988989 -140299673 + A-rich Low_complexity Low_complexity 3 66 0 388 322 78 41 chr4 43989560 43990106 -140298556 + L1M1 LINE L1 2255 4752 -1231 204 316 0 40 chr4 43990782 43990858 -140297804 + MIR SINE MIR 74 146 -62 210 311 33 0 chr4 43991466 43991617 -140297045 + (CATCC)n Simple_repeat Simple_repeat 4 159 0 * 218 186 0 0 chr4 43991610 43991653 -140297009 + (TCCA)n Simple_repeat Simple_repeat 3 45 0 233 312 129 49 chr4 43991863 43992126 -140296536 + L2 LINE L2 2985 3268 -4 446 289 78 20 chr4 43993406 43993610 -140295052 - Charlie5 DNA MER1_type 0 2622 2407 21 95 0 0 chr4 43995922 43995985 -140292677 + GC_rich Low_complexity Low_complexity 1 63 0 1939 210 115 6 chr4 43998971 43999475 -140289187 - MLT1F1 LTR MaLR -7 560 2 366 302 0 16 chr4 43999679 43999805 -140288857 + L1MC4a LINE L1 5815 5938 -1870 254 353 64 16 chr4 44000659 44000846 -140287816 + L2 LINE L2 2993 3188 -84 299 289 124 21 chr4 44000972 44001166 -140287496 + MIR SINE MIR 35 248 -14 265 193 18 105 chr4 44001623 44001737 -140286925 + MIR SINE MIR 18 121 -87 212 163 0 20 chr4 44010201 44010250 -140278412 + (CAT)n Simple_repeat Simple_repeat 3 50 0 961 142 9 5 chr4 44010266 44010652 -140278010 + (TCCA)n Simple_repeat Simple_repeat 1 564 0 676 99 37 25 chr4 44010639 44010801 -140277861 + (CAGTC)n Simple_repeat Simple_repeat 4 167 0 192 330 117 0 chr4 44011966 44012069 -140276593 - MIR SINE MIR -78 130 16 313 327 30 0 chr4 44012208 44012309 -140276353 - MIR SINE MIR -80 182 79 211 284 108 14 chr4 44012814 44012888 -140275774 + MIR SINE MIR 52 132 -130 294 238 48 0 chr4 44012892 44012976 -140275686 + MLT1H LTR MaLR 84 171 -378 244 268 16 55 chr4 44013238 44013365 -140275297 + MIR SINE MIR 104 225 -37 256 77 39 19 chr4 44014519 44014571 -140274091 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 366 23 0 0 chr4 44014580 44014623 -140274039 + (TCCA)n Simple_repeat Simple_repeat 3 45 0 489 276 59 20 chr4 44014858 44015061 -140273601 + MLT1K LTR MaLR 93 303 -285 667 284 40 5 chr4 44015592 44015793 -140272869 + MLT1K LTR MaLR 366 573 -15 297 310 133 13 chr4 44016165 44016323 -140272339 + MIR SINE MIR 8 184 -78 248 241 65 0 chr4 44016413 44016521 -140272141 + (TA)n Simple_repeat Simple_repeat 2 116 0 415 156 0 21 chr4 44016524 44016620 -140272042 + (TCCA)n Simple_repeat Simple_repeat 3 96 0 318 325 3 26 chr4 44016927 44017173 -140271489 + GA-rich Low_complexity Low_complexity 1 240 0 501 239 44 19 chr4 44018480 44018639 -140270023 - MLT1K LTR MaLR -2 586 424 369 261 39 8 chr4 44018648 44018778 -140269884 - MLT1K LTR MaLR -454 134 1 414 340 62 10 chr4 44021099 44021293 -140267369 - MIR SINE MIR -14 248 45 2282 100 3 0 chr4 44021760 44022070 -140266592 - AluSx SINE Alu -1 311 1 201 39 0 0 chr4 44022660 44022686 -140265976 + (CTGGGG)n Simple_repeat Simple_repeat 4 29 0 247 209 143 77 chr4 44022817 44022908 -140265754 + MIR SINE MIR 93 190 -18 222 118 0 0 chr4 44023380 44023414 -140265248 + (CCCA)n Simple_repeat Simple_repeat 4 37 0 323 315 22 0 chr4 44023520 44023612 -140265050 - MIR SINE MIR -70 138 45 466 310 83 27 chr4 44024445 44024684 -140263978 + MIR SINE MIR 10 256 -6 198 297 108 0 chr4 44024884 44024958 -140263704 + MIR3 SINE MIR 112 193 -15 288 217 85 104 chr4 44025903 44026009 -140262653 - MIR SINE MIR -77 131 28 262 122 20 0 chr4 44027062 44027111 -140261551 + L2 LINE L2 3005 3054 -218 228 422 0 0 chr4 44027398 44027533 -140261129 + (CA)n Simple_repeat Simple_repeat 1 135 0 235 304 108 2 chr4 44028047 44028163 -140260499 - MIR SINE MIR -27 181 56 238 296 96 0 chr4 44029598 44029713 -140258949 - MIR3 SINE MIR -68 140 15 433 237 71 4 chr4 44030191 44030363 -140258299 - MIR SINE MIR -59 149 16 273 213 120 28 chr4 44032472 44032580 -140256082 - Charlie8 DNA MER1_type -2255 162 45 191 205 0 0 chr4 44032968 44033007 -140255655 - MIR SINE MIR -143 119 81 196 256 21 0 chr4 44033007 44033073 -140255589 - MIR SINE MIR -85 123 54 192 273 0 0 chr4 44033855 44033943 -140254719 + (CCTG)n Simple_repeat Simple_repeat 1 88 0 685 277 90 9 chr4 44034193 44034525 -140254137 + MLT1C LTR MaLR 4 362 -105 319 316 61 0 chr4 44035481 44035595 -140253067 + L1MCa LINE L1 2268 2388 -4038 533 163 34 22 chr4 44035630 44035808 -140252854 + GA-rich Low_complexity Low_complexity 1 180 0 261 146 0 0 chr4 44040573 44040621 -140248041 + (CACG)n Simple_repeat Simple_repeat 2 49 0 231 292 94 42 chr4 44042268 44042364 -140246298 + MIR3 SINE MIR 88 188 -20 562 238 35 0 chr4 44042712 44042855 -140245807 - MLT1G1 LTR MaLR 0 595 448 253 226 0 0 chr4 44042870 44042923 -140245739 - MLT1G1 LTR MaLR -314 281 229 318 172 0 43 chr4 44044796 44044816 -140243846 + GA-rich Low_complexity Low_complexity 1 20 -69 2044 105 19 38 chr4 44044816 44045130 -140243532 + AluSx SINE Alu 1 308 -4 318 172 0 43 chr4 44045130 44045202 -140243460 + GA-rich Low_complexity Low_complexity 20 89 0 396 340 27 0 chr4 44045949 44046096 -140242566 + MIR SINE MIR 56 206 -56 213 196 0 22 chr4 44047026 44047072 -140241590 - MIR SINE MIR -133 75 31 469 333 6 0 chr4 44047074 44047233 -140241429 + MIR SINE MIR 16 175 -87 385 254 75 15 chr4 44047856 44047990 -140240672 + L2 LINE L2 2963 3104 -168 322 281 6 84 chr4 44048216 44048383 -140240279 + MER45A DNA AcHobo 16 169 -9 201 148 0 74 chr4 44050108 44050162 -140238500 + (CGGGG)n Simple_repeat Simple_repeat 1 50 0 463 354 60 46 chr4 44050826 44051393 -140237269 - HAL1 LINE L1 -1205 1302 875 21 0 0 0 chr4 44051532 44051553 -140237109 + GC_rich Low_complexity Low_complexity 1 21 0 246 194 0 42 chr4 44051656 44051728 -140236934 + G-rich Low_complexity Low_complexity 1 69 0 55 48 0 0 chr4 44051728 44051811 -140236851 + GC_rich Low_complexity Low_complexity 1 83 0 23 78 0 0 chr4 44051883 44051934 -140236728 + GC_rich Low_complexity Low_complexity 1 51 0 22 0 0 0 chr4 44051967 44051989 -140236673 + GC_rich Low_complexity Low_complexity 1 22 0 369 0 0 0 chr4 44053309 44053350 -140235312 + (TG)n Simple_repeat Simple_repeat 1 41 0 24 0 0 0 chr4 44053684 44053708 -140234954 + GC_rich Low_complexity Low_complexity 1 24 0 198 342 13 13 chr4 44055566 44055645 -140233017 + MIR SINE MIR 93 171 -91 700 176 0 46 chr4 44055835 44055966 -140232696 - FLAM_C SINE Alu -8 125 1 407 252 162 0 chr4 44056218 44056329 -140232333 - MIR SINE MIR -96 166 38 286 212 0 0 chr4 44056406 44056482 -140232180 + MIR3 SINE MIR 103 179 -29 197 88 0 29 chr4 44056931 44056965 -140231697 - MIR SINE MIR -117 145 113 533 256 63 22 chr4 44057464 44057661 -140231001 + MIR SINE MIR 1 203 -59 455 207 0 9 chr4 44057687 44057803 -140230859 + CT-rich Low_complexity Low_complexity 1 115 0 454 189 19 0 chr4 44057857 44057963 -140230699 + C-rich Low_complexity Low_complexity 6 113 0 212 339 0 0 chr4 44060088 44060153 -140228509 - MIR SINE MIR -118 144 80 268 330 9 28 chr4 44060326 44060435 -140228227 + MIR SINE MIR 42 148 -114 342 253 92 0 chr4 44060472 44060559 -140228103 + MIR SINE MIR 89 183 -79 266 364 106 8 chr4 44061166 44061298 -140227364 - MIR SINE MIR -12 250 106 234 264 36 36 chr4 44061454 44061564 -140227098 + MIR3 SINE MIR 11 120 -88 254 283 0 0 chr4 44063118 44063178 -140225484 + MIR SINE MIR 110 169 -93 386 288 27 18 chr4 44063178 44063289 -140225373 + L2 LINE L2 3185 3296 -17 329 240 139 8 chr4 44063976 44064105 -140224557 - MIR SINE MIR -88 174 29 216 258 30 0 chr4 44064514 44064580 -140224082 + MIR SINE MIR 119 186 -76 203 114 29 0 chr4 44064995 44065030 -140223632 + MIR SINE MIR 110 145 -117 200 329 82 0 chr4 44065148 44065221 -140223441 + MIR3 SINE MIR 102 180 -28 242 273 47 17 chr4 44065666 44065838 -140222824 + (CCCG)n Simple_repeat Simple_repeat 4 180 0 218 318 6 37 chr4 44066106 44066221 -140222441 + MIR SINE MIR 10 120 -88 186 317 50 20 chr4 44067052 44067153 -140221509 + MIR3 SINE MIR 85 188 -20 190 291 55 0 chr4 44067649 44067704 -140220958 + L2 LINE L2 3240 3297 -16 214 240 20 0 chr4 44068003 44068053 -140220609 - L2 LINE L2 -8 3264 3214 233 367 7 54 chr4 44069159 44069306 -140219356 + MIR SINE MIR 6 145 -117 2304 86 0 0 chr4 44069831 44070133 -140218529 - AluSc SINE Alu -7 302 1 300 165 101 0 chr4 44070144 44070223 -140218439 - L1MB4 LINE L1 0 6180 6094 308 306 0 0 chr4 44073819 44073891 -140214771 - L2 LINE L2 -10 3303 3232 400 217 0 0 chr4 44074963 44075032 -140213630 + AluS SINE Alu 1 69 -244 * 850 225 0 0 chr4 44075028 44075203 -140213459 + AluJo/FRAM SINE Alu 134 308 0 246 298 49 53 chr4 44076009 44076065 -140212597 + L1MEc LINE L1 1506 1561 -4835 2133 113 0 10 chr4 44076065 44076375 -140212287 - AluSp SINE Alu -6 307 1 246 298 49 53 chr4 44076375 44076563 -140212099 + L1MEc LINE L1 1561 1749 -4647 633 211 108 124 chr4 44077248 44077516 -140211146 + MER66A LTR ERV1 97 224 -254 2201 105 3 0 chr4 44077516 44077820 -140210842 + AluSx SINE Alu 1 305 -7 633 211 108 124 chr4 44077820 44078071 -140210591 + MER66A LTR ERV1 224 477 -1 192 121 61 0 chr4 44078704 44078737 -140209925 + MER5A DNA MER1_type 48 82 -107 180 286 119 16 chr4 44080498 44080624 -140208038 - L2 LINE L2 -9 3263 3125 1491 206 3 7 chr4 44082966 44083257 -140205405 + AluJo SINE Alu 1 290 -22 893 191 32 55 chr4 44083268 44083488 -140205174 + AluJb SINE Alu 85 299 -13 309 239 6 37 chr4 44084644 44084807 -140203855 + G-rich Low_complexity Low_complexity 2 159 0 25 75 0 0 chr4 44085111 44085164 -140203498 + GC_rich Low_complexity Low_complexity 1 53 0 45 45 0 0 chr4 44085178 44085244 -140203418 + GC_rich Low_complexity Low_complexity 1 66 0 43 47 0 0 chr4 44085297 44085361 -140203301 + GC_rich Low_complexity Low_complexity 1 64 0 48 93 0 0 chr4 44085507 44085646 -140203016 + GC_rich Low_complexity Low_complexity 1 139 0 29 0 0 0 chr4 44085797 44085826 -140202836 + GC_rich Low_complexity Low_complexity 1 29 0 790 204 13 6 chr4 44090295 44090452 -140198210 - AluJo SINE Alu -154 158 1 709 172 25 0 chr4 44090592 44090714 -140197948 + FLAM_A SINE Alu 10 134 -8 295 307 36 7 chr4 44090729 44090869 -140197793 + MER20 DNA MER1_type 64 207 -12 431 252 57 24 chr4 44092900 44093023 -140195639 - MIR3 SINE MIR -76 132 6 263 360 0 0 chr4 44093393 44093468 -140195194 - MIR SINE MIR -80 182 108 1554 104 9 5 chr4 44096224 44096446 -140192216 - AluSg/x SINE Alu -14 296 74 323 304 11 11 chr4 44097894 44098059 -140190603 + C-rich Low_complexity Low_complexity 1 280 0 242 336 16 16 chr4 44098244 44098366 -140190296 + L2 LINE L2 2932 3053 -219 222 276 0 0 chr4 44098522 44098580 -140190082 + (TGAG)n Simple_repeat Simple_repeat 3 60 0 212 240 25 50 chr4 44099568 44099660 -140189002 + MIR SINE MIR 63 149 -63 338 289 31 0 chr4 44100105 44100202 -140188460 - MIR SINE MIR -96 166 67 2074 128 0 3 chr4 44103577 44103874 -140184788 - AluJo SINE Alu -12 300 5 265 244 64 0 chr4 44105049 44105127 -140183535 - MIR SINE MIR -147 115 33 2516 43 3 0 chr4 44108187 44108488 -140180174 - AluY SINE Alu -8 303 2 253 135 0 0 chr4 44108488 44108525 -140180137 - L2 LINE L2 -12 3260 3224 496 228 6 6 chr4 44110221 44110388 -140178274 + CT-rich Low_complexity Low_complexity 1 167 0 335 279 0 0 chr4 44112097 44112176 -140176486 + MIR SINE MIR 77 155 -107 229 318 12 31 chr4 44114973 44115094 -140173568 - MIR SINE MIR -63 145 55 270 0 0 0 chr4 44115394 44115424 -140173238 + (CCCCAG)n Simple_repeat Simple_repeat 6 35 0 285 191 44 0 chr4 44117435 44117503 -140171159 - L2 LINE L2 -19 3294 3224 229 215 93 28 chr4 44117838 44117945 -140170717 - MIR SINE MIR -62 146 33 217 239 0 0 chr4 44120041 44120087 -140168575 - MIR SINE MIR -74 134 89 298 0 48 0 chr4 44120206 44120248 -140168414 + (TTTA)n Simple_repeat Simple_repeat 4 47 0 22 80 0 0 chr4 44120465 44120515 -140168147 + GC_rich Low_complexity Low_complexity 1 50 0 233 125 25 0 chr4 44120833 44120873 -140167789 + L1MC/D LINE L1 5620 5660 -582 254 369 49 0 chr4 44125257 44125379 -140163283 + MIR SINE MIR 4 131 -131 180 308 77 39 chr4 44125459 44125563 -140163099 - MIR3 SINE MIR -89 119 12 192 235 39 0 chr4 44126028 44126079 -140162583 + MIR SINE MIR 88 140 -68 2197 119 0 0 chr4 44126148 44126451 -140162211 + AluSx SINE Alu 1 303 -9 180 154 19 115 chr4 44126970 44127022 -140161640 + MIR SINE MIR 86 132 -76 230 320 152 0 chr4 44128289 44128414 -140160248 - MIR3 SINE MIR -58 150 7 227 289 77 29 chr4 44128889 44128993 -140159669 + MIR SINE MIR 40 148 -60 193 177 63 38 chr4 44129437 44129516 -140159146 + MIR SINE MIR 50 130 -78 384 250 188 0 chr4 44129858 44129986 -140158676 + MER91A DNA MER1_type 1 152 -44 187 298 144 0 chr4 44131017 44131121 -140157541 + MIR SINE MIR 31 149 -113 401 246 60 134 chr4 44131825 44132179 -140156483 - MLT1D LTR MaLR -47 343 8 304 289 97 0 chr4 44132866 44132980 -140155682 - L2 LINE L2 -220 3052 2928 259 281 90 90 chr4 44234065 44234232 -140054430 - MLT1K LTR MaLR -415 173 7 531 306 68 19 chr4 44234353 44234559 -140054103 - MIR SINE MIR -32 230 15 363 44 0 0 chr4 44235242 44235287 -140053375 + (CA)n Simple_repeat Simple_repeat 2 46 0 944 190 4 18 chr4 44235290 44235516 -140053146 + L1P LINE L1 5141 5363 -783 192 40 0 0 chr4 44235525 44235550 -140053112 + (CA)n Simple_repeat Simple_repeat 1 25 0 351 162 54 0 chr4 44235954 44236028 -140052634 + MIR SINE MIR 129 206 -56 450 143 0 14 chr4 44236032 44236125 -140052537 - AluSg/x SINE Alu 0 304 213 311 111 74 0 chr4 44237114 44237168 -140051494 + MER53 DNA DNA 131 188 -1 672 188 0 38 chr4 44237171 44237304 -140051358 + MLT1E1 LTR MaLR 134 261 -393 1281 217 14 11 chr4 44237374 44237650 -140051012 + MLT1E1 LTR MaLR 378 654 0 2450 90 0 0 chr4 44238055 44238389 -140050273 - L1PA7 LINE L1 0 6154 5821 363 282 45 9 chr4 44238399 44238509 -140050153 - MIR SINE MIR -87 175 62 22 56 0 0 chr4 44239172 44239208 -140049454 + AT_rich Low_complexity Low_complexity 1 36 0 219 125 0 0 chr4 44239411 44239451 -140049211 + (TG)n Simple_repeat Simple_repeat 1 40 0 180 152 0 0 chr4 44239588 44239621 -140049041 + A-rich Low_complexity Low_complexity 3 35 0 192 340 78 48 chr4 44239654 44239757 -140048905 + L2 LINE L2 3164 3269 -3 30 0 0 0 chr4 44241827 44241857 -140046805 + AT_rich Low_complexity Low_complexity 1 30 0 747 327 16 4 chr4 44242849 44243097 -140045565 + MIR SINE MIR 12 262 0 2374 88 0 0 chr4 44243730 44244038 -140044624 - AluY SINE Alu -1 310 3 1329 203 62 31 chr4 44244849 44245169 -140043493 + MLT1B LTR MaLR 61 390 0 364 335 71 13 chr4 44245265 44245420 -140043242 - L2 LINE L2 -8 3264 3101 327 324 57 68 chr4 44245808 44245933 -140042729 - MLT1K LTR MaLR -67 521 396 632 64 11 0 chr4 44245933 44246027 -140042635 + (TCTA)n Simple_repeat Simple_repeat 2 96 0 327 324 57 68 chr4 44246027 44246268 -140042394 - MLT1K LTR MaLR -192 396 159 2504 58 0 3 chr4 44246446 44246756 -140041906 - AluY SINE Alu -2 309 1 2800 220 26 5 chr4 44246905 44247701 -140040961 + L1PA16 LINE L1 4657 5471 -695 2723 51 0 11 chr4 44247701 44248047 -140040615 + L1PA6 LINE L1 5801 6147 -7 3732 149 32 30 chr4 44248047 44248731 -140039931 + L1PA16 LINE L1 5469 6165 -1 182 152 30 0 chr4 44250552 44250585 -140038077 + L2 LINE L2 3258 3291 -22 195 301 82 27 chr4 44251062 44251135 -140037527 + L2 LINE L2 3219 3295 -18 559 311 149 32 chr4 44253095 44253680 -140034982 + HAL1 LINE L1 426 1078 -1429 291 239 125 0 chr4 44253681 44253769 -140034893 + L1 LINE L1 4904 5002 -1144 9134 184 58 13 chr4 44253790 44254242 -140034420 - L1MA4 LINE L1 -6 7713 7283 2410 64 0 0 chr4 44254242 44254539 -140034123 - AluY SINE Alu -14 297 1 9134 184 58 13 chr4 44254539 44256939 -140031723 - L1MA4 LINE L1 -436 7283 4729 3317 142 81 0 chr4 44256942 44257563 -140031099 - L1MA4 LINE L1 -4436 3129 2459 * 4400 168 18 20 chr4 44257551 44258038 -140030624 + L1PA16 LINE L1 4983 5470 -696 252 0 0 0 chr4 44258038 44258066 -140030596 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 4400 168 18 20 chr4 44258066 44258668 -140029994 + L1PA16 LINE L1 5470 6072 -94 483 260 76 29 chr4 44258725 44259040 -140029622 + HAL1 LINE L1 1121 1450 -1057 274 248 248 0 chr4 44259064 44259177 -140029485 + HAL1 LINE L1 1681 1821 -686 325 297 75 75 chr4 44262185 44262491 -140026171 - HAL1 LINE L1 -356 2151 1846 652 335 28 22 chr4 44262549 44262910 -140025752 - HAL1 LINE L1 -788 1719 1357 468 272 38 24 chr4 44263039 44263209 -140025453 - MER52A LTR ERV1 -395 1232 449 * 799 206 92 163 chr4 44263190 44263527 -140025135 - LTR28 LTR ERV1 -785 970 1 9395 120 10 9 chr4 44263527 44264914 -140023748 - LTR28-int LTR ERV1 0 7091 5703 613 196 103 127 chr4 44264998 44265485 -140023177 - MER52A LTR ERV1 -23 970 1 460 270 157 100 chr4 44265564 44266474 -140022188 - HAL1 LINE L1 -1286 1221 260 5520 158 13 2 chr4 44267194 44268139 -140020523 - L1MA3 LINE L1 -8 6297 5343 222 37 0 0 chr4 44268139 44268166 -140020496 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2139 189 7 111 chr4 44268166 44268615 -140020047 - L1PA8 LINE L1 -17 6155 5754 * 12563 184 37 65 chr4 44268590 44269009 -140019653 - L1 LINE L1 -753 6812 6383 2143 114 20 0 chr4 44269009 44269307 -140019355 + AluSx SINE Alu 1 304 -8 12563 184 37 65 chr4 44269307 44272411 -140016251 - L1 LINE L1 -1182 6383 3386 462 114 0 0 chr4 44272774 44272844 -140015818 + (TA)n Simple_repeat Simple_repeat 2 71 0 22 0 0 0 chr4 44274535 44274557 -140014105 + AT_rich Low_complexity Low_complexity 1 22 0 235 358 60 8 chr4 44274612 44274746 -140013916 - MIR SINE MIR -3 259 119 694 247 55 22 chr4 44275401 44275583 -140013079 - MIR SINE MIR -11 251 64 320 346 10 0 chr4 44275581 44275685 -140012977 + MIR3 SINE MIR 81 185 -23 * 216 293 134 12 chr4 44275903 44275985 -140012677 + L2 LINE L2 3221 3312 -1 913 33 0 0 chr4 44277245 44277367 -140011295 - L1PA2 LINE L1 -2807 3339 3218 17434 22 0 0 chr4 44277367 44280180 -140008482 + L1PA2 LINE L1 3341 6153 -2 201 39 0 0 chr4 44280183 44280209 -140008453 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 222 37 0 0 chr4 44280292 44280319 -140008343 + (A)n Simple_repeat Simple_repeat 1 27 0 210 359 33 22 chr4 44280772 44280864 -140007798 - MIR3 SINE MIR -31 177 85 1017 182 6 0 chr4 44282145 44282321 -140006341 - AluJb SINE Alu -16 296 120 3036 290 88 34 chr4 44282475 44282840 -140005822 - HERV16 LTR ERVL -3645 1351 1007 1791 204 27 0 chr4 44282840 44283178 -140005484 - MER7A DNA MER2_type -1 345 1 3036 290 88 34 chr4 44283178 44284094 -140004568 - HERV16 LTR ERVL -3989 1007 1 966 281 51 37 chr4 44284132 44284427 -140004235 - LTR16A LTR ERVL -93 357 59 187 363 58 43 chr4 44285146 44285633 -140003029 - L2 LINE L2 -909 2405 1912 371 349 9 9 chr4 44285645 44285751 -140002911 - L2 LINE L2 -4 3268 3163 229 325 96 5 chr4 44285912 44286056 -140002606 - MIR SINE MIR -58 150 9 249 293 37 12 chr4 44286190 44286272 -140002390 - L2 LINE L2 -48 3224 3141 25 31 0 0 chr4 44286746 44286778 -140001884 + AT_rich Low_complexity Low_complexity 1 32 0 2596 36 7 0 chr4 44287903 44288212 -140000450 - AluY SINE Alu 0 311 1 360 0 0 0 chr4 44288347 44288387 -140000275 + (CA)n Simple_repeat Simple_repeat 2 41 0 481 291 17 0 chr4 44288694 44288811 -139999851 - L2 LINE L2 -8 3305 3187 297 297 178 0 chr4 44289468 44289569 -139999093 + L2 LINE L2 3195 3313 0 294 95 0 0 chr4 44289689 44289731 -139998931 + (TTCA)n Simple_repeat Simple_repeat 1 42 0 180 271 21 0 chr4 44289954 44290002 -139998660 + L2 LINE L2 3263 3311 -2 240 335 21 37 chr4 44291021 44291151 -139997511 - L1M1 LINE L1 -760 5543 5415 2195 127 33 30 chr4 44291151 44291513 -139997149 - THE1B LTR MaLR 0 364 2 240 335 21 37 chr4 44291513 44291573 -139997089 - L1M1 LINE L1 -888 5415 5356 4330 151 30 37 chr4 44291701 44291823 -139996839 - L1MA9 LINE L1 -26 6286 6165 363 23 0 0 chr4 44291823 44291867 -139996795 + (TG)n Simple_repeat Simple_repeat 1 44 0 4330 151 30 37 chr4 44291867 44293250 -139995412 - L1MA9 LINE L1 -147 6165 4501 537 330 132 0 chr4 44293688 44293915 -139994747 + MIR SINE MIR 4 260 -2 185 189 57 38 chr4 44294558 44294611 -139994051 + L2 LINE L2 3219 3272 0 3727 139 25 3 chr4 44295384 44296015 -139992647 + L1MA2 LINE L1 5565 6209 -95 28 29 0 0 chr4 44296047 44296082 -139992580 + AT_rich Low_complexity Low_complexity 1 35 0 211 100 14 57 chr4 44296144 44296214 -139992448 + (TA)n Simple_repeat Simple_repeat 1 67 0 815 214 12 6 chr4 44296243 44296416 -139992246 - MER5A DNA MER1_type -15 174 1 312 394 113 5 chr4 44297177 44297390 -139991272 + MIR SINE MIR 20 255 -7 185 337 48 0 chr4 44297397 44297480 -139991182 - L3 LINE CR1 -92 1485 1399 38 61 0 0 chr4 44297640 44297706 -139990956 + AT_rich Low_complexity Low_complexity 1 66 0 1044 260 100 30 chr4 44297868 44298237 -139990425 - MLT1I LTR MaLR -8 401 7 2325 97 0 3 chr4 44299265 44299573 -139989089 - AluSx SINE Alu -5 307 1 270 73 0 0 chr4 44299921 44299962 -139988700 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 1216 211 16 12 chr4 44299964 44300206 -139988456 - AluJo SINE Alu -30 282 40 364 312 84 25 chr4 44300409 44300611 -139988051 + L2 LINE L2 2274 2487 -827 764 205 60 32 chr4 44301021 44301206 -139987456 + MER20 DNA MER1_type 30 219 0 263 280 75 21 chr4 44301225 44301318 -139987344 + L2 LINE L2 2919 3016 -256 223 297 0 14 chr4 44301949 44302023 -139986639 - MIR SINE MIR 0 262 190 370 302 21 0 chr4 44302118 44302214 -139986448 + LTR33 LTR ERVL 21 118 -403 2299 137 19 6 chr4 44302238 44302597 -139986065 + THE1B LTR MaLR 1 364 0 10925 116 5 29 chr4 44302597 44304207 -139984455 + THE1B-int LTR MaLR 1 1571 -9 2485 117 17 6 chr4 44304215 44304575 -139984087 + THE1B LTR MaLR 1 364 0 571 262 10 64 chr4 44304723 44304925 -139983737 + LTR33 LTR ERVL 328 518 -3 321 341 53 29 chr4 44305774 44305944 -139982718 - L3 LINE CR1 -624 953 780 298 146 0 18 chr4 44306042 44306097 -139982565 - MADE1 DNA Mariner -26 54 1 26 0 0 0 chr4 44306202 44306228 -139982434 + AT_rich Low_complexity Low_complexity 1 26 0 1598 219 40 47 chr4 44306247 44306717 -139981945 + MLT1C LTR MaLR 1 467 0 2093 120 7 0 chr4 44307779 44308062 -139980600 + AluSx SINE Alu 1 285 -27 259 317 33 97 chr4 44308710 44309041 -139979621 - MLT1J LTR MaLR -46 465 156 28 29 0 0 chr4 44309198 44309233 -139979429 + AT_rich Low_complexity Low_complexity 1 35 0 663 285 58 96 chr4 44309865 44310364 -139978298 - LTR33A LTR ERVL -8 515 36 676 286 25 23 chr4 44310659 44311106 -139977556 + LTR33 LTR ERVL 15 512 -9 28 0 0 0 chr4 44311770 44311798 -139976864 + AT_rich Low_complexity Low_complexity 1 28 0 255 31 0 0 chr4 44312749 44312781 -139975881 + (CA)n Simple_repeat Simple_repeat 2 33 0 21 0 0 0 chr4 44313008 44313029 -139975633 + AT_rich Low_complexity Low_complexity 1 21 0 361 284 71 59 chr4 44313726 44313763 -139974899 - MLT1L LTR MaLR -6 505 470 1929 148 7 0 chr4 44313763 44314073 -139974589 + AluSx SINE Alu 1 312 0 361 284 71 59 chr4 44314073 44314538 -139974124 - MLT1L LTR MaLR -41 470 4 1588 232 46 0 chr4 44314739 44315088 -139973574 + MLT1A1 LTR MaLR 1 365 0 184 352 65 19 chr4 44316727 44316835 -139971827 + MIR SINE MIR 93 205 -57 1590 231 50 57 chr4 44317243 44317789 -139970873 - MER34 LTR ERV1 0 542 1 224 29 86 0 chr4 44318677 44318712 -139969950 + A-rich Low_complexity Low_complexity 2 39 0 21 0 0 0 chr4 44318719 44318740 -139969922 + AT_rich Low_complexity Low_complexity 1 21 0 237 185 19 0 chr4 44318783 44318837 -139969825 + T-rich Low_complexity Low_complexity 5 59 0 2819 6 0 10 chr4 44319244 44319558 -139969104 - AluYa5 SINE Alu 0 311 1 1723 201 22 6 chr4 44320061 44320420 -139968242 - MLT1A1 LTR MaLR 0 365 1 453 348 57 27 chr4 44320529 44320897 -139967765 + L2 LINE L2 2158 2536 -778 853 144 20 0 chr4 44320922 44321068 -139967594 - LTR52 LTR ERVL -3 418 270 57 28 0 0 chr4 44321504 44321575 -139967087 + AT_rich Low_complexity Low_complexity 1 71 0 216 352 67 21 chr4 44321634 44321827 -139966835 - L2 LINE L2 -527 2787 2586 1567 207 39 24 chr4 44321844 44322225 -139966437 + LTR52 LTR ERVL 32 418 -3 272 330 89 51 chr4 44322259 44322595 -139966067 - L2 LINE L2 -806 2508 2160 25 31 0 0 chr4 44323136 44323168 -139965494 + AT_rich Low_complexity Low_complexity 1 32 0 536 332 27 31 chr4 44323457 44323713 -139964949 + MIR SINE MIR 8 262 0 23 0 0 0 chr4 44324680 44324703 -139963959 + AT_rich Low_complexity Low_complexity 1 23 0 180 176 0 0 chr4 44326727 44326761 -139961901 + (CA)n Simple_repeat Simple_repeat 2 35 0 481 318 29 33 chr4 44326829 44327074 -139961588 - HAL1 LINE L1 -579 1928 1685 783 315 71 19 chr4 44327129 44327673 -139960989 - HERV16 LTR ERVL -1340 4424 3778 673 365 38 45 chr4 44327866 44328468 -139960194 - HERV16 LTR ERVL -4003 993 396 2187 123 3 0 chr4 44328474 44328776 -139959886 - AluSx SINE Alu -7 305 3 649 296 132 35 chr4 44329099 44329471 -139959191 - LTR16A LTR ERVL 0 457 50 343 220 135 14 chr4 44329482 44329623 -139959039 - HAL1 LINE L1 -821 1686 1529 1575 236 108 55 chr4 44329624 44330133 -139958529 + MLT1F1 LTR MaLR 7 567 0 188 35 35 0 chr4 44330207 44330236 -139958426 + (TC)n Simple_repeat Simple_repeat 2 31 0 547 260 123 50 chr4 44330237 44330739 -139957923 - HAL1 LINE L1 -1052 1455 895 367 286 69 37 chr4 44330751 44330940 -139957722 - HAL1 LINE L1 -1852 655 461 1426 289 77 43 chr4 44331023 44331584 -139957078 - MLT1G LTR MaLR -2 588 9 1313 142 59 1 chr4 44332119 44332545 -139956117 + LTR54 LTR ERV1 1 510 0 180 326 0 0 chr4 44333486 44333535 -139955127 - MIR SINE MIR -96 166 118 226 398 0 0 chr4 44333672 44333765 -139954897 + MER5A DNA MER1_type 69 161 -28 717 136 7 14 chr4 44333767 44333914 -139954748 + (TTCC)n Simple_repeat Simple_repeat 3 148 0 793 199 18 0 chr4 44333935 44334216 -139954446 + CT-rich Low_complexity Low_complexity 1 286 0 2121 103 3 28 chr4 44334342 44334661 -139954001 - AluY SINE Alu 0 311 1 234 62 0 0 chr4 44335079 44335111 -139953551 + (T)n Simple_repeat Simple_repeat 1 32 0 21 0 0 0 chr4 44335576 44335597 -139953065 + AT_rich Low_complexity Low_complexity 1 21 0 334 298 7 53 chr4 44336927 44337025 -139951637 - MIR SINE MIR -3 259 169 1647 221 121 43 chr4 44337025 44337604 -139951058 + MLT1E2 LTR MaLR 1 624 -2 334 298 7 53 chr4 44337604 44337656 -139951006 - MIR SINE MIR -93 169 116 264 203 62 31 chr4 44337681 44337745 -139950917 + L2 LINE L2 3207 3272 0 1706 88 4 8 chr4 44339872 44340111 -139948551 + AluSq SINE Alu 1 238 -75 1905 111 46 0 chr4 44340156 44340436 -139948226 + AluSp SINE Alu 16 308 -5 21 0 0 0 chr4 44340835 44340856 -139947806 + AT_rich Low_complexity Low_complexity 1 21 0 1112 214 109 19 chr4 44341451 44341764 -139946898 - L1MD3 LINE L1 -263 7732 7392 1794 217 44 28 chr4 44341775 44342232 -139946430 + L1ME1 LINE L1 5698 6161 -5 793 299 148 17 chr4 44342385 44342803 -139945859 + LTR16C LTR ERVL 5 477 -14 1414 198 90 32 chr4 44342964 44343364 -139945298 + MER31B LTR ERV1 1 423 -43 1835 118 3 112 chr4 44344446 44344785 -139943877 + AluSq SINE Alu 2 303 0 27 29 0 0 chr4 44344821 44344855 -139943807 + AT_rich Low_complexity Low_complexity 1 34 0 241 343 50 50 chr4 44345416 44345614 -139943048 + MIR SINE MIR 14 211 -51 348 293 122 11 chr4 44345691 44345872 -139942790 + MIR SINE MIR 38 238 -24 822 289 91 0 chr4 44345922 44346154 -139942508 - MIR SINE MIR -8 254 2 3332 144 24 14 chr4 44346312 44346420 -139942242 + L1MA7 LINE L1 5675 5780 -511 990 23 30 0 chr4 44346420 44346552 -139942110 + (TCTA)n Simple_repeat Simple_repeat 3 138 0 3332 144 24 14 chr4 44346552 44347026 -139941636 + L1MA7 LINE L1 5780 6263 -28 21 0 0 0 chr4 44347125 44347146 -139941516 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr4 44347966 44347995 -139940667 + AT_rich Low_complexity Low_complexity 1 29 0 255 273 0 0 chr4 44349111 44349166 -139939496 - L2 LINE L2 -15 3257 3203 1731 143 63 38 chr4 44349694 44350059 -139938603 + THE1C LTR MaLR 1 374 -1 291 277 24 12 chr4 44350101 44350184 -139938478 + MIR3 SINE MIR 114 197 -11 2764 22 0 0 chr4 44351304 44351626 -139937036 + L1PA4 LINE L1 5833 6154 -1 232 271 122 80 chr4 44351888 44352076 -139936586 + MIR SINE MIR 26 221 -41 2207 120 3 0 chr4 44352273 44352582 -139936080 - AluSq SINE Alu -3 310 1 26 30 0 0 chr4 44352804 44352837 -139935825 + AT_rich Low_complexity Low_complexity 1 33 0 337 323 30 15 chr4 44354555 44354688 -139933974 - MLT2E LTR ERVL -456 172 38 2071 85 0 41 chr4 44355466 44355818 -139932844 + AluY SINE Alu 1 340 0 2090 108 0 10 chr4 44356827 44357141 -139931521 + AluYa5 SINE Alu 1 311 0 237 185 19 0 chr4 44357548 44357602 -139931060 + A-rich Low_complexity Low_complexity 5 59 0 21 0 0 0 chr4 44357645 44357666 -139930996 + AT_rich Low_complexity Low_complexity 1 21 0 224 29 86 0 chr4 44357673 44357708 -139930954 + T-rich Low_complexity Low_complexity 2 39 0 876 200 45 10 chr4 44358596 44358796 -139929866 + MER34 LTR ERV1 1 207 -335 217 121 64 29 chr4 44358907 44359047 -139929615 + (TTATA)n Simple_repeat Simple_repeat 3 147 0 414 106 50 38 chr4 44359077 44359237 -139929425 + (TTATA)n Simple_repeat Simple_repeat 5 166 0 * 463 32 114 13 chr4 44359209 44359367 -139929295 + (TA)n Simple_repeat Simple_repeat 1 174 0 39 0 0 0 chr4 44359372 44359411 -139929251 + AT_rich Low_complexity Low_complexity 1 39 0 26899 82 15 2 chr4 44359422 44359581 -139929081 + HERVL LTR ERVL 1081 1237 -4417 1745 122 3 113 chr4 44359581 44359917 -139928745 + AluSx SINE Alu 1 299 -3 26899 82 15 2 chr4 44359917 44363263 -139925399 + HERVL LTR ERVL 1237 4630 -1024 218 150 50 0 chr4 44363414 44363454 -139925208 - MIR SINE MIR -1 261 220 671 270 17 6 chr4 44363486 44363660 -139925002 + AluJb SINE Alu 129 304 -8 683 152 0 8 chr4 44363685 44363817 -139924845 + GA-rich Low_complexity Low_complexity 1 131 0 276 349 38 23 chr4 44363817 44363949 -139924713 - MIR SINE MIR -128 134 1 225 65 0 0 chr4 44366026 44366057 -139922605 + (CAAA)n Simple_repeat Simple_repeat 3 33 0 676 33 0 22 chr4 44366547 44366639 -139922023 + L1MA1 LINE L1 6209 6298 -4 21 36 0 0 chr4 44367494 44367522 -139921140 + AT_rich Low_complexity Low_complexity 1 28 0 2919 92 7 9 chr4 44368722 44369144 -139919518 - L1MA1 LINE L1 0 6302 5882 26 0 0 0 chr4 44370049 44370075 -139918587 + AT_rich Low_complexity Low_complexity 1 26 0 1112 159 0 17 chr4 44370945 44371121 -139917541 - AluJo SINE Alu -16 296 124 2251 212 29 46 chr4 44371166 44371210 -139917452 - MLT2B2 LTR ERVL 0 515 472 614 84 0 21 chr4 44371210 44371305 -139917357 + (TAGA)n Simple_repeat Simple_repeat 4 96 0 2251 212 29 46 chr4 44371305 44371784 -139916878 - MLT2B2 LTR ERVL -43 472 1 1813 175 0 3 chr4 44371855 44372147 -139916515 + AluSx SINE Alu 1 291 -21 184 333 33 11 chr4 44372267 44372357 -139916305 - MIR SINE MIR -11 251 160 363 200 0 0 chr4 44372577 44372652 -139916010 - L1PA10 LINE L1 -1869 4277 4203 5933 146 35 6 chr4 44372653 44374488 -139914174 + L1PA10 LINE L1 4278 6160 -8 389 290 103 27 chr4 44374715 44374953 -139913709 + MLT1H LTR MaLR 47 267 -142 598 224 147 39 chr4 44375611 44375767 -139912895 - MER5A DNA MER1_type 0 189 17 207 348 96 39 chr4 44377064 44377346 -139911316 + L2 LINE L2 2597 2894 -420 392 273 154 36 chr4 44377389 44377609 -139911053 + L1M4 LINE L1 4341 4586 -1560 417 155 21 10 chr4 44379752 44379849 -139908813 + (TATG)n Simple_repeat Simple_repeat 3 100 0 288 0 0 0 chr4 44380985 44381017 -139907645 + (TC)n Simple_repeat Simple_repeat 2 33 0 * 522 86 0 0 chr4 44381016 44381097 -139907565 + (TA)n Simple_repeat Simple_repeat 1 81 0 203 324 0 29 chr4 44381268 44381336 -139907326 - L2 LINE L2 -16 3297 3232 352 306 188 16 chr4 44381409 44381664 -139906998 - L2 LINE L2 -1 3312 3014 257 250 0 16 chr4 44382380 44382444 -139906218 - L2 LINE L2 0 3313 3251 184 328 148 0 chr4 44383392 44383453 -139905209 - MIR SINE MIR -107 101 32 423 238 91 21 chr4 44383610 44383753 -139904909 + MLT1C LTR MaLR 1 153 -314 263 203 91 161 chr4 44386447 44386590 -139902072 - MIR SINE MIR -82 180 48 194 396 0 11 chr4 44388219 44388310 -139900352 - MIR SINE MIR -116 146 57 702 269 52 0 chr4 44388384 44388577 -139900085 + MIR SINE MIR 14 216 -46 242 288 42 34 chr4 44388613 44388731 -139899931 + L2 LINE L2 2222 2340 -974 2378 230 33 29 chr4 44388737 44389264 -139899398 + MER90 LTR ERV1 1 532 -82 1874 184 74 2 chr4 44389264 44389667 -139898995 - MSTB1 LTR MaLR 0 432 1 2378 230 33 29 chr4 44389667 44389751 -139898911 + MER90 LTR ERV1 532 614 0 3883 155 52 8 chr4 44390069 44390866 -139897796 + Tigger3b DNA MER2_type 1 847 -384 672 199 262 19 chr4 44390866 44391072 -139897590 + MSTB LTR MaLR 1 256 -170 317 48 0 0 chr4 44391072 44391114 -139897548 - MADE1 DNA Mariner -35 45 4 3012 218 48 11 chr4 44391117 44391742 -139896920 + MSTA-int LTR MaLR 620 1267 -384 2114 154 36 33 chr4 44391742 44392105 -139896557 - THE1B LTR MaLR 0 364 1 2284 128 8 28 chr4 44392105 44392496 -139896166 + MSTA-int LTR MaLR 1263 1645 -6 1929 152 119 35 chr4 44392501 44392675 -139895987 + MSTA LTR MaLR 1 159 -269 2712 16 0 3 chr4 44392675 44392980 -139895682 + AluYb8 SINE Alu 1 304 -14 1929 152 119 35 chr4 44392980 44393200 -139895462 + MSTA LTR MaLR 159 428 0 2205 164 46 5 chr4 44393201 44393574 -139895088 + Tigger3b DNA MER2_type 844 1231 0 540 242 24 0 chr4 44393631 44393755 -139894907 - MER94 DNA DNA -7 127 1 480 316 30 6 chr4 44395504 44395672 -139892990 + MLT1F LTR MaLR 1 172 -370 408 176 0 0 chr4 44395676 44395744 -139892918 + AluJ/FRAM SINE Alu 231 298 -14 1917 226 35 41 chr4 44395768 44396309 -139892353 + LTR55 LTR ERV 1 538 -10 1026 256 142 15 chr4 44396329 44396661 -139892001 + MLT1F LTR MaLR 169 542 0 26 0 0 0 chr4 44396803 44396829 -139891833 + AT_rich Low_complexity Low_complexity 1 26 0 1953 106 50 3 chr4 44397537 44397820 -139890842 + AluSg1 SINE Alu 1 296 -13 289 342 26 17 chr4 44397969 44398086 -139890576 - L2 LINE L2 -1 3312 3195 23 33 0 0 chr4 44398291 44398321 -139890341 + AT_rich Low_complexity Low_complexity 1 30 0 517 308 32 32 chr4 44398533 44398780 -139889882 + MER102a DNA MER1_type 81 327 -3 219 276 138 16 chr4 44399217 44399340 -139889322 - MIR SINE MIR 0 262 125 22 35 0 0 chr4 44399901 44399930 -139888732 + AT_rich Low_complexity Low_complexity 1 29 0 2170 133 33 11 chr4 44401677 44402044 -139886618 + THE1C LTR MaLR 1 375 0 6544 162 39 54 chr4 44402045 44403443 -139885219 + THE1C-int LTR MaLR 2 1378 -202 1755 180 31 52 chr4 44403443 44403782 -139884880 + THE1C LTR MaLR 1 333 -42 1736 199 43 6 chr4 44403782 44404133 -139884529 - THE1B LTR MaLR 0 364 1 1755 180 31 52 chr4 44404133 44404176 -139884486 + THE1C LTR MaLR 333 375 0 1225 154 0 5 chr4 44404176 44404384 -139884278 + THE1C-int LTR MaLR 1374 1580 0 2093 154 27 11 chr4 44404384 44404753 -139883909 + THE1C LTR MaLR 1 375 0 268 296 139 17 chr4 44404753 44404868 -139883794 + MIR SINE MIR 5 133 -129 2254 97 0 0 chr4 44405227 44405526 -139883136 + AluY SINE Alu 1 299 -12 2114 212 63 2 chr4 44405604 44406162 -139882500 + L1MA4 LINE L1 2288 2908 -3238 10805 182 27 16 chr4 44407142 44408942 -139879720 + L1MA4 LINE L1 2924 4703 -1597 194 0 39 0 chr4 44408942 44408968 -139879694 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 10805 182 27 16 chr4 44408968 44409806 -139878856 + L1MA4 LINE L1 4703 5530 -770 2213 125 0 3 chr4 44409806 44410119 -139878543 - AluSx SINE Alu 0 312 1 10805 182 27 16 chr4 44410119 44410314 -139878348 + L1MA4 LINE L1 5530 5721 -579 258 32 0 0 chr4 44410314 44410345 -139878317 + (CA)n Simple_repeat Simple_repeat 2 32 0 10805 182 27 16 chr4 44410345 44410840 -139877822 + L1MA4 LINE L1 5721 6293 -7 1347 205 7 41 chr4 44410866 44411159 -139877503 + AluJo SINE Alu 1 283 -29 189 74 0 0 chr4 44411445 44411472 -139877190 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2957 9 0 0 chr4 44411472 44411806 -139876856 - L1PA2 LINE L1 -11 6144 5811 2847 186 30 32 chr4 44411806 44412430 -139876232 + MER67C LTR ERV1 88 710 0 1770 148 29 60 chr4 44412530 44412915 -139875747 - THE1C LTR MaLR 0 375 3 9148 141 47 8 chr4 44412917 44414047 -139874615 - THE1C-int LTR MaLR 0 1580 495 2007 141 0 0 chr4 44414047 44414337 -139874325 - AluSx SINE Alu -17 295 6 9148 141 47 8 chr4 44414337 44414402 -139874260 - THE1C-int LTR MaLR -1085 495 434 4961 83 22 8 chr4 44414402 44415114 -139873548 - LTR30 LTR ERV1 0 722 1 9148 141 47 8 chr4 44415114 44415439 -139873223 - THE1C-int LTR MaLR -1146 434 1 1838 168 21 37 chr4 44415439 44415819 -139872843 - THE1C LTR MaLR 0 375 2 657 251 48 139 chr4 44415978 44416309 -139872353 + L1M4b LINE L1 18 318 -6541 807 207 49 32 chr4 44416318 44416603 -139872059 + L1M4b LINE L1 1526 1815 -5040 31 0 0 0 chr4 44416781 44416812 -139871850 + AT_rich Low_complexity Low_complexity 1 31 0 2557 49 0 3 chr4 44417338 44417645 -139871017 - AluY SINE Alu -5 306 1 219 235 0 0 chr4 44418849 44418900 -139869762 + (TG)n Simple_repeat Simple_repeat 1 51 0 235 277 62 0 chr4 44419603 44419668 -139868994 + L2 LINE L2 3245 3313 0 297 328 135 10 chr4 44420019 44420240 -139868422 - MIR SINE MIR -2 260 15 1649 211 71 14 chr4 44420623 44420987 -139867675 - MLT1B LTR MaLR 0 390 6 21 0 0 0 chr4 44421918 44421939 -139866723 + AT_rich Low_complexity Low_complexity 1 21 0 188 83 0 28 chr4 44422714 44422750 -139865912 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 6711 74 5 2 chr4 44422752 44424106 -139864556 - L1PA7 LINE L1 -7 6147 4791 1373 226 35 73 chr4 44424575 44424974 -139863688 + MLT1B LTR MaLR 2 385 -5 33 73 0 0 chr4 44425727 44425795 -139862867 + AT_rich Low_complexity Low_complexity 1 68 0 349 366 31 7 chr4 44428274 44428561 -139860101 + L1ME LINE L1 5526 5819 -302 4246 176 53 6 chr4 44428581 44429409 -139859253 + L1MC1 LINE L1 5467 6333 0 3212 123 15 2 chr4 44429547 44430027 -139858635 + LTR15 LTR ERV1 1 486 -7 280 314 78 31 chr4 44430141 44430399 -139858263 + L1MEd LINE L1 561 830 -5289 1980 122 9 28 chr4 44430512 44430833 -139857829 + LTR15 LTR ERV1 172 486 -7 293 280 116 49 chr4 44430947 44431394 -139857268 + L1MEd LINE L1 561 1037 -5082 349 243 79 29 chr4 44431551 44431691 -139856971 - MLT1F1 LTR MaLR -113 454 308 391 232 0 0 chr4 44431986 44432068 -139856594 + Tigger5 DNA MER2_type 2241 2322 -1 461 311 56 0 chr4 44432233 44432332 -139856330 + MIR SINE MIR 20 133 -129 1412 204 128 85 chr4 44432332 44432816 -139855846 - MLT1D LTR MaLR 0 505 1 461 311 56 0 chr4 44432816 44432877 -139855785 + MIR SINE MIR 133 189 -73 28 0 0 0 chr4 44432920 44432948 -139855714 + AT_rich Low_complexity Low_complexity 1 28 0 1712 197 134 8 chr4 44433479 44433859 -139854803 + LTR3 LTR ERVK 5 432 0 524 311 94 24 chr4 44434274 44434619 -139854043 - HERV16 LTR ERVL -2261 2735 2397 294 201 201 62 chr4 44434650 44434794 -139853868 - L1M4 LINE L1 -837 5309 5146 441 376 25 10 chr4 44434869 44435066 -139853596 - HERV16 LTR ERVL -2777 2219 2020 548 331 5 0 chr4 44435169 44435353 -139853309 - HERV16 LTR ERVL -3039 1957 1773 924 337 57 14 chr4 44435593 44436083 -139852579 - HERV16 LTR ERVL -4484 512 2 403 339 132 23 chr4 44436086 44436390 -139852272 - LTR16A LTR ERVL -2 448 112 22 35 0 0 chr4 44436533 44436562 -139852100 + AT_rich Low_complexity Low_complexity 1 29 0 357 250 41 78 chr4 44436710 44436944 -139851718 - MER5C DNA MER1_type -3 321 5 306 304 6 35 chr4 44436944 44437182 -139851480 - L1MDb LINE L1 -5021 1375 1137 22 94 0 0 chr4 44437748 44437812 -139850850 + AT_rich Low_complexity Low_complexity 1 64 0 329 324 20 0 chr4 44437905 44438007 -139850655 + ERVL LTR ERVL 3314 3417 -2347 317 354 29 17 chr4 44438126 44438301 -139850361 + L1ME3A LINE L1 5706 5882 -288 226 78 62 16 chr4 44438383 44438447 -139850215 + (TA)n Simple_repeat Simple_repeat 1 67 0 368 337 67 6 chr4 44438749 44438927 -139849735 + LTR33 LTR ERVL 1 189 -332 266 177 104 52 chr4 44439046 44439142 -139849520 + LTR33A LTR ERVL 327 427 -96 192 369 148 17 chr4 44440530 44440706 -139847956 - L2 LINE L2 -414 2900 2702 508 371 38 4 chr4 44441356 44441596 -139847066 - MIR SINE MIR 0 262 15 229 126 57 40 chr4 44442236 44442411 -139846251 + (TA)n Simple_repeat Simple_repeat 2 179 0 * 258 96 72 24 chr4 44442376 44442501 -139846161 + (TTATA)n Simple_repeat Simple_repeat 1 131 0 383 211 20 20 chr4 44442503 44442655 -139846007 + (TATAA)n Simple_repeat Simple_repeat 3 154 0 347 95 101 0 chr4 44442665 44442823 -139845839 + (TA)n Simple_repeat Simple_repeat 2 175 0 40 21 0 0 chr4 44442823 44442870 -139845792 + AT_rich Low_complexity Low_complexity 1 47 0 328 92 98 6 chr4 44442870 44443034 -139845628 + (TA)n Simple_repeat Simple_repeat 2 180 0 290 178 35 11 chr4 44443060 44443234 -139845428 + (TA)n Simple_repeat Simple_repeat 2 179 0 229 156 92 18 chr4 44443247 44443356 -139845306 + (TTATA)n Simple_repeat Simple_repeat 5 121 0 324 77 87 0 chr4 44443361 44443465 -139845197 + (TA)n Simple_repeat Simple_repeat 1 113 0 67 42 0 0 chr4 44443468 44443563 -139845099 + AT_rich Low_complexity Low_complexity 1 95 0 2946 85 18 5 chr4 44443563 44443961 -139844701 - MLT2A1 LTR ERVL -41 403 1 1677 174 31 29 chr4 44445407 44445793 -139842869 - L1MA7 LINE L1 -1 6290 5904 293 200 0 0 chr4 44445796 44445856 -139842806 + L1MA7 LINE L1 5832 5891 -421 496 353 173 12 chr4 44447259 44447738 -139840924 + LTR67 LTR ERVL 1 556 -1 213 39 0 0 chr4 44447927 44447953 -139840709 + (TG)n Simple_repeat Simple_repeat 2 27 0 737 300 14 0 chr4 44448415 44448638 -139840024 - LTR16A LTR ERVL 0 450 225 516 291 78 19 chr4 44448735 44449003 -139839659 - LTR43 LTR ERV1 -132 470 187 481 306 25 20 chr4 44449328 44449527 -139839135 - LTR16A LTR ERVL -233 217 18 21 0 0 0 chr4 44449542 44449563 -139839099 + AT_rich Low_complexity Low_complexity 1 21 0 279 0 0 0 chr4 44449587 44449618 -139839044 + (CA)n Simple_repeat Simple_repeat 2 32 0 52 85 0 0 chr4 44449706 44449835 -139838827 + AT_rich Low_complexity Low_complexity 1 129 0 24 0 0 0 chr4 44450393 44450417 -139838245 + AT_rich Low_complexity Low_complexity 1 24 0 30 0 0 0 chr4 44450553 44450583 -139838079 + AT_rich Low_complexity Low_complexity 1 30 0 23 54 0 0 chr4 44450767 44450804 -139837858 + AT_rich Low_complexity Low_complexity 1 37 0 22 70 0 0 chr4 44451380 44451423 -139837239 + AT_rich Low_complexity Low_complexity 1 43 0 21 71 0 0 chr4 44453141 44453183 -139835479 + AT_rich Low_complexity Low_complexity 1 42 0 4151 191 32 46 chr4 44453617 44453772 -139834890 - L1MA9 LINE L1 -2 6310 6154 306 0 0 0 chr4 44453772 44453806 -139834856 + (TG)n Simple_repeat Simple_repeat 1 34 0 4151 191 32 46 chr4 44453806 44453922 -139834740 - L1MA9 LINE L1 -158 6154 6038 1863 149 7 0 chr4 44453922 44454217 -139834445 - AluSx SINE Alu -15 297 1 4151 191 32 46 chr4 44454217 44454623 -139834039 - L1MA9 LINE L1 -274 6038 5628 2412 74 3 0 chr4 44454623 44454933 -139833729 + AluY SINE Alu 1 311 0 4151 191 32 46 chr4 44454933 44455799 -139832863 - L1MA9 LINE L1 -684 5628 4792 1629 124 17 21 chr4 44455799 44456089 -139832573 - AluSc SINE Alu -15 294 6 4151 191 32 46 chr4 44456089 44456572 -139832090 - L1MA9 LINE L1 -1520 4792 4304 9455 168 29 5 chr4 44456603 44459548 -139829114 - L1MA1 LINE L1 -6 7715 4696 2155 107 3 83 chr4 44459550 44459924 -139828738 + LTR14A LTR ERVK 1 344 0 4634 96 3 8 chr4 44459924 44460568 -139828094 + HERVK14 LTR ERVK 1 641 -5304 1416 65 16 0 chr4 44460551 44460736 -139827926 + HERVK14 LTR ERVK 1366 1553 -4392 * 12591 67 0 32 chr4 44460739 44462472 -139826190 + HERVK14 LTR ERVK 3976 5579 -366 1226 165 14 14 chr4 44462474 44462505 -139826157 + PRIMA41-int LTR ERV1 7545 7756 0 1369 88 6 0 chr4 44462505 44462686 -139825976 + HERVK14 LTR ERVK 5578 5759 -186 315 210 0 16 chr4 44462686 44462748 -139825914 + MER41C LTR ERV1 1 61 -493 506 77 0 0 chr4 44462748 44462813 -139825849 + HERVK14 LTR ERVK 5822 5886 -59 718 326 19 16 chr4 44462855 44463177 -139825485 + HERVK14 LTR ERVK 7070 7392 -25 2292 78 3 83 chr4 44463189 44463561 -139825101 + LTR14A LTR ERVK 1 342 -2 18795 190 36 9 chr4 44463563 44468130 -139820532 - L1MA1 LINE L1 -2865 4700 13 4597 218 101 14 chr4 44468131 44469433 -139819229 - L1MA9 LINE L1 -1830 4316 2902 218 203 31 16 chr4 44469585 44469649 -139819013 + (TA)n Simple_repeat Simple_repeat 2 66 0 3586 109 5 35 chr4 44469808 44470379 -139818283 - MER41A LTR ERV1 0 554 1 23 0 0 0 chr4 44471549 44471572 -139817090 + AT_rich Low_complexity Low_complexity 1 23 0 235 276 55 87 chr4 44472290 44472417 -139816245 - MLT1K LTR MaLR -177 411 289 203 319 56 0 chr4 44473072 44473144 -139815518 - MER5A DNA MER1_type -27 162 87 21 0 0 0 chr4 44473532 44473553 -139815109 + AT_rich Low_complexity Low_complexity 1 21 0 215 167 21 0 chr4 44473638 44473686 -139814976 + (TA)n Simple_repeat Simple_repeat 2 50 0 23 0 0 0 chr4 44473830 44473853 -139814809 + AT_rich Low_complexity Low_complexity 1 23 0 473 291 72 45 chr4 44474026 44474291 -139814371 + L1ME LINE L1 817 1088 -4982 596 339 89 8 chr4 44474303 44474817 -139813845 + L1ME LINE L1 1193 1748 -4513 2387 136 22 2 chr4 44474819 44475225 -139813437 + L1MA3 LINE L1 5784 6197 -108 30 27 0 0 chr4 44475226 44475263 -139813399 + AT_rich Low_complexity Low_complexity 1 37 0 404 256 39 35 chr4 44475265 44475468 -139813194 + L1ME LINE L1 1749 1952 -4309 616 213 69 65 chr4 44475510 44475726 -139812936 + MLT1B LTR MaLR 1 217 -173 254 191 0 0 chr4 44475728 44475775 -139812887 + L1ME LINE L1 2072 2118 -3962 448 100 0 0 chr4 44475775 44475835 -139812827 - MSTA LTR MaLR 0 428 369 451 139 13 13 chr4 44475835 44475914 -139812748 - THE1C-int LTR MaLR -1500 80 2 1983 133 74 11 chr4 44475915 44476268 -139812394 - THE1C LTR MaLR 0 375 1 228 312 0 0 chr4 44476839 44476916 -139811746 - L1MEc LINE L1 -1541 4605 4529 725 322 51 19 chr4 44476941 44477729 -139810933 - L1MEc LINE L1 -2485 3661 2849 395 360 45 0 chr4 44477952 44478152 -139810510 - MIR SINE MIR -48 214 6 330 333 47 16 chr4 44478240 44478369 -139810293 + L2 LINE L2 2903 3035 -237 6648 76 16 4 chr4 44478376 44479379 -139809283 - L1PA7 LINE L1 0 6154 5147 4037 97 0 0 chr4 44479396 44479964 -139808698 + L1P LINE L1 4533 5100 -1046 595 277 117 39 chr4 44480063 44480478 -139808184 - L1MEc LINE L1 -3611 2535 2124 25 0 0 0 chr4 44480498 44480523 -139808139 + AT_rich Low_complexity Low_complexity 1 25 0 24 53 0 0 chr4 44481239 44481277 -139807385 + AT_rich Low_complexity Low_complexity 1 38 0 390 314 15 7 chr4 44481713 44481850 -139806812 + MIR3 SINE MIR 67 204 -4 2008 61 51 24 chr4 44481916 44482209 -139806453 + AluY SINE Alu 1 301 -10 831 274 65 65 chr4 44482602 44483018 -139805644 - L2 LINE L2 0 3313 2898 1018 240 24 35 chr4 44483094 44483382 -139805280 - MLT1A1 LTR MaLR -8 357 73 1894 102 39 14 chr4 44484313 44484596 -139804066 + AluSq SINE Alu 23 312 -1 236 331 46 23 chr4 44485569 44485699 -139802963 - LTR16B LTR ERVL -147 317 185 28 86 0 0 chr4 44486673 44486743 -139801919 + AT_rich Low_complexity Low_complexity 1 70 0 456 313 45 28 chr4 44486901 44487077 -139801585 - MIR SINE MIR -48 214 36 186 256 33 83 chr4 44487258 44487379 -139801283 + MIR SINE MIR 148 262 0 367 229 201 45 chr4 44487987 44488166 -139800496 + MIR SINE MIR 1 207 -55 264 59 0 0 chr4 44488774 44488808 -139799854 + (CA)n Simple_repeat Simple_repeat 2 35 0 3505 133 71 16 chr4 44489039 44489454 -139799208 - L1MC1 LINE L1 -17 6316 5851 2587 87 3 11 chr4 44489454 44489811 -139798851 - THE1A LTR MaLR 0 355 2 3505 133 71 16 chr4 44489811 44490041 -139798621 - L1MC1 LINE L1 -482 5851 5635 499 339 91 4 chr4 44490620 44490665 -139797997 + MLT1J2 LTR MaLR 201 241 -209 823 193 30 30 chr4 44490665 44490867 -139797795 - MER105 DNA DNA -2 202 1 499 339 91 4 chr4 44490867 44491051 -139797611 + MLT1J2 LTR MaLR 241 450 0 1160 21 0 14 chr4 44491252 44491396 -139797266 - L1PA4 LINE L1 0 6155 6014 21 36 0 0 chr4 44492437 44492465 -139796197 + AT_rich Low_complexity Low_complexity 1 28 0 251 259 76 38 chr4 44492494 44492625 -139796037 - L2 LINE L2 -62 3251 3116 252 347 133 5 chr4 44492749 44492945 -139795717 - L2 LINE L2 -2618 696 476 528 350 70 60 chr4 44493721 44494366 -139794296 + L2 LINE L2 632 1282 -2032 815 367 113 15 chr4 44494384 44495330 -139793332 + L2 LINE L2 1792 2830 -484 300 344 63 28 chr4 44495451 44495704 -139792958 + L2 LINE L2 3047 3308 -5 2264 108 3 0 chr4 44495925 44496231 -139792431 + AluSx SINE Alu 3 309 -3 395 222 145 8 chr4 44496449 44496566 -139792096 - MER63 DNA MER1_type 0 1061 929 17222 86 12 3 chr4 44496669 44498950 -139789712 - HERVL LTR ERVL -620 5034 2733 3138 97 21 1 chr4 44499050 44499739 -139788923 - L1P3 LINE L1 -566 5588 4891 981 120 38 0 chr4 44500755 44500913 -139787749 - MER2 DNA MER2_type -136 209 46 335 122 0 0 chr4 44500916 44500965 -139787697 + L1M1 LINE L1 5651 5699 -603 354 234 45 9 chr4 44501203 44501314 -139787348 + L1MC4 LINE L1 7922 8036 -6 2264 86 0 7 chr4 44501352 44501653 -139787009 - AluY SINE Alu -12 299 1 358 368 187 20 chr4 44501939 44502238 -139786424 - L3 LINE CR1 -3 1574 1226 2528 146 38 11 chr4 44503264 44503715 -139784947 - L1PB3 LINE L1 -7 6147 5685 36 0 0 0 chr4 44503952 44503988 -139784674 + AT_rich Low_complexity Low_complexity 1 36 0 2257 95 0 0 chr4 44504085 44504380 -139784282 + AluSc SINE Alu 1 295 -14 22 35 0 0 chr4 44505561 44505590 -139783072 + AT_rich Low_complexity Low_complexity 1 29 0 842 292 77 9 chr4 44505724 44506073 -139782589 + ERVL LTR ERVL 5064 5436 -328 193 179 0 45 chr4 44506077 44506144 -139782518 + (TATATG)n Simple_repeat Simple_repeat 1 64 0 2239 92 3 7 chr4 44506613 44506918 -139781744 - AluSg1 SINE Alu -5 304 1 838 55 0 0 chr4 44507258 44507367 -139781295 + L1PA6 LINE L1 6046 6154 0 521 257 105 0 chr4 44507965 44508136 -139780526 - MER5A DNA MER1_type 0 189 1 1361 216 50 47 chr4 44508327 44508689 -139779973 + MLT1A1 LTR MaLR 3 365 0 1811 189 19 22 chr4 44508916 44509282 -139779380 + MLT1A1 LTR MaLR 1 365 0 671 304 117 26 chr4 44509287 44509672 -139778990 + MLT1J2 LTR MaLR 1 420 -30 221 176 0 20 chr4 44509685 44509736 -139778926 + (TATG)n Simple_repeat Simple_repeat 3 52 0 439 342 86 6 chr4 44509786 44510030 -139778632 + MLT1H1 LTR MaLR 2 303 -292 1644 188 44 29 chr4 44510147 44510488 -139778174 - THE1B LTR MaLR 0 364 19 10822 112 9 5 chr4 44510491 44512059 -139776603 - THE1B-int LTR MaLR -6 1574 1 398 169 0 0 chr4 44512059 44512124 -139776538 - THE1C LTR MaLR 0 364 300 * 1100 134 6 0 chr4 44512121 44512278 -139776384 - THE1C LTR MaLR -216 159 2 748 333 77 16 chr4 44512750 44513177 -139775485 - MER20B DNA MER1_type -328 455 3 193 370 62 0 chr4 44513179 44513260 -139775402 - L2 LINE L2 -504 2810 2725 803 275 95 75 chr4 44513332 44513786 -139774876 - L2 LINE L2 -599 2715 2253 593 321 14 24 chr4 44513806 44514018 -139774644 - MLT2E LTR ERVL -206 422 213 1724 135 193 11 chr4 44514088 44514450 -139774212 - MSTA LTR MaLR 0 428 1 186 351 33 60 chr4 44514736 44514887 -139773775 - MIR SINE MIR -62 200 54 324 340 58 5 chr4 44515748 44515939 -139772723 + MIR SINE MIR 54 254 -8 228 390 49 16 chr4 44516159 44516282 -139772380 - L2 LINE L2 -1 3271 3145 237 359 0 0 chr4 44516342 44516420 -139772242 + MER5A DNA MER1_type 112 189 0 1913 101 7 0 chr4 44516575 44516852 -139771810 - L1PA13 LINE L1 -3 6160 5882 3488 243 82 58 chr4 44516982 44518744 -139769918 + L1ME1 LINE L1 3014 4817 -1329 1402 234 6 30 chr4 44518752 44519085 -139769577 - MLT1B LTR MaLR -4 386 62 1066 282 26 53 chr4 44519096 44519550 -139769112 + L1ME1 LINE L1 5675 6116 -50 272 200 0 0 chr4 44519612 44519662 -139769000 - Alu SINE Alu -5 295 246 8410 26 0 0 chr4 44520466 44521474 -139767188 - L1PA4 LINE L1 -788 5358 4351 2491 37 0 0 chr4 44521475 44521770 -139766892 + L1PA4 LINE L1 5367 5661 -494 2196 51 0 0 chr4 44521870 44522143 -139766519 + L1PA4 LINE L1 5880 6152 -3 23 0 0 0 chr4 44522589 44522612 -139766050 + AT_rich Low_complexity Low_complexity 1 23 0 325 287 48 43 chr4 44523393 44523581 -139765081 + L1M4 LINE L1 2200 2388 -3758 1509 172 40 23 chr4 44523841 44524143 -139764519 + AluJb SINE Alu 1 307 -5 295 343 29 0 chr4 44524349 44524486 -139764176 + L1ME LINE L1 5507 5647 -474 31 68 0 0 chr4 44525604 44525663 -139762999 + AT_rich Low_complexity Low_complexity 1 59 0 32 26 0 0 chr4 44525706 44525745 -139762917 + AT_rich Low_complexity Low_complexity 1 39 0 870 122 64 0 chr4 44526797 44526953 -139761709 + L1MA4A LINE L1 6132 6297 -6 34 24 0 0 chr4 44526985 44527026 -139761636 + AT_rich Low_complexity Low_complexity 1 41 0 22 35 0 0 chr4 44527059 44527088 -139761574 + AT_rich Low_complexity Low_complexity 1 29 0 186 303 105 13 chr4 44527391 44527467 -139761195 + L2 LINE L2 3213 3295 -18 24 0 0 0 chr4 44528148 44528172 -139760490 + AT_rich Low_complexity Low_complexity 1 24 0 548 308 106 40 chr4 44528180 44528632 -139760030 + L2 LINE L2 1811 2292 -1022 5275 55 1 199 chr4 44530372 44531402 -139757260 + LTR12 LTR ERV1 1 826 0 1684 213 19 62 chr4 44531797 44532219 -139756443 - MER67D LTR ERV1 -110 404 1 436 235 26 0 chr4 44532328 44532443 -139756219 - L1MC4 LINE L1 -124 7918 7801 623 191 18 12 chr4 44533278 44533446 -139755216 + CT-rich Low_complexity Low_complexity 4 172 0 309 169 0 0 chr4 44533550 44533609 -139755053 + CT-rich Low_complexity Low_complexity 2 60 0 1686 161 0 11 chr4 44533617 44533890 -139754772 - AluSx SINE Alu -39 273 4 2421 149 18 25 chr4 44533948 44534385 -139754277 + Tigger2a DNA MER2_type 1 434 0 532 315 72 0 chr4 44534432 44534613 -139754049 - MER58C DNA MER1_type -1 214 21 244 330 60 10 chr4 44535106 44535206 -139753456 + L2 LINE L2 3209 3313 0 21 0 0 0 chr4 44536010 44536031 -139752631 + AT_rich Low_complexity Low_complexity 1 21 0 1642 160 18 24 chr4 44586696 44587027 -139701635 + L1MA7 LINE L1 5962 6290 -1 22 35 0 0 chr4 44587267 44587296 -139701366 + AT_rich Low_complexity Low_complexity 1 29 0 916 198 210 21 chr4 44587473 44587801 -139700861 - MER63D DNA MER1_type -629 432 43 325 294 33 0 chr4 44587801 44587893 -139700769 + (CATG)n Simple_repeat Simple_repeat 1 95 0 191 167 0 42 chr4 44588043 44588091 -139700571 + (CATA)n Simple_repeat Simple_repeat 3 48 0 285 225 14 14 chr4 44588093 44588164 -139700498 - MER63D DNA MER1_type -988 73 3 654 298 58 10 chr4 44588318 44588523 -139700139 + MIR SINE MIR 13 227 -35 7579 25 1 1 chr4 44588775 44590426 -139698236 - L1PA3 LINE L1 -3 6152 4505 26 0 0 0 chr4 44590721 44590747 -139697915 + AT_rich Low_complexity Low_complexity 1 26 0 1183 8 0 0 chr4 44590747 44590881 -139697781 - L1HS LINE L1 -2 6153 6020 585 300 87 9 chr4 44590881 44591111 -139697551 - MIR SINE MIR -3 259 12 27 29 0 0 chr4 44591416 44591450 -139697212 + AT_rich Low_complexity Low_complexity 1 34 0 2096 144 23 9 chr4 44591637 44591983 -139696679 + THE1C-int LTR MaLR 1002 1352 -228 1692 172 31 16 chr4 44592086 44592406 -139696256 + THE1C LTR MaLR 51 375 0 21 36 0 0 chr4 44592710 44592738 -139695924 + AT_rich Low_complexity Low_complexity 1 28 0 186 118 0 0 chr4 44593221 44593255 -139695407 + (TCTCTG)n Simple_repeat Simple_repeat 1 34 0 6657 65 10 13 chr4 44594636 44595670 -139692992 + L1PA6 LINE L1 5119 6149 -5 329 132 0 0 chr4 44595677 44595730 -139692932 + Alu SINE Alu 1 53 -249 298 85 0 0 chr4 44595728 44595775 -139692887 - Alu SINE Alu -254 47 1 * 387 335 33 7 chr4 44595961 44596113 -139692549 - LTR67 LTR ERVL -55 502 347 1735 227 117 8 chr4 44596545 44597025 -139691637 - MER34 LTR ERV1 0 542 11 2217 108 0 19 chr4 44597670 44597984 -139690678 + AluSg SINE Alu 1 308 -2 356 261 9 118 chr4 44598446 44598657 -139690005 - MIR SINE MIR -7 255 68 2018 130 14 0 chr4 44598874 44599167 -139689495 - AluSx SINE Alu -12 300 4 459 0 0 0 chr4 44599273 44599324 -139689338 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 627 279 26 11 chr4 44599507 44599697 -139688965 + MIR SINE MIR 20 212 -50 7461 36 0 0 chr4 44600741 44601709 -139686953 - L1PA3 LINE L1 -3 6152 5184 11127 194 15 19 chr4 44601709 44604400 -139684262 - L1M1 LINE L1 -743 5403 2799 6349 16 3 1 chr4 44604400 44605148 -139683514 + L1P LINE L1 4508 5256 -890 27659 53 3 0 chr4 44605248 44609603 -139679059 - L1P LINE L1 -1780 4366 1 916 259 118 94 chr4 44609710 44610261 -139678401 - MLT1E LTR MaLR 0 567 4 301 379 38 24 chr4 44611384 44611595 -139677067 - MLT1I LTR MaLR -53 356 143 349 263 0 12 chr4 44611623 44611703 -139676959 - MLT1I LTR MaLR -328 81 3 333 291 51 0 chr4 44611704 44611821 -139676841 - MIR SINE MIR -59 203 81 2076 164 42 40 chr4 44611821 44612370 -139676292 - MLT2A2 LTR ERVL 0 554 1 25 0 0 0 chr4 44613114 44613139 -139675523 + AT_rich Low_complexity Low_complexity 1 25 0 201 39 0 0 chr4 44614031 44614057 -139674605 + (TG)n Simple_repeat Simple_repeat 1 26 0 822 232 143 15 chr4 44614181 44614509 -139674153 - LTR37B LTR ERV1 0 468 99 399 303 123 50 chr4 44614787 44615544 -139673118 + L1MEd LINE L1 441 1252 -4867 492 182 11 11 chr4 44616455 44616543 -139672119 - MER119 DNA MER1_type 0 583 496 1516 181 0 36 chr4 44617673 44617950 -139670712 - AluJo SINE Alu -33 279 13 2269 144 83 5 chr4 44618008 44618405 -139670257 + MSTA LTR MaLR 1 428 0 7518 196 51 20 chr4 44618405 44620006 -139668656 + MSTA-int LTR MaLR 1 1651 0 2390 118 75 8 chr4 44620008 44620407 -139668255 + MSTA LTR MaLR 3 428 0 1861 197 103 7 chr4 44622326 44622733 -139665929 - Tigger2 DNA MER2_type 0 2718 2273 375 214 0 0 chr4 44622722 44622792 -139665870 + MER8 DNA MER2_type 170 239 0 * 23 68 0 0 chr4 44623570 44623614 -139665048 + AT_rich Low_complexity Low_complexity 1 44 0 352 331 85 87 chr4 44624061 44624120 -139664542 - L2 LINE L2 -481 2833 2775 2764 13 0 0 chr4 44624120 44624423 -139664239 - AluY SINE Alu -8 303 1 352 331 85 87 chr4 44624423 44625072 -139663590 - L2 LINE L2 -539 2775 2127 5697 146 23 32 chr4 44625351 44626430 -139662232 - MER11C LTR ERVK 0 1071 3 351 290 22 40 chr4 44626606 44626770 -139661892 - MIR SINE MIR -58 204 37 249 241 19 0 chr4 44626972 44627026 -139661636 - L2 LINE L2 -52 3261 3207 208 231 31 31 chr4 44627915 44627980 -139660682 + CT-rich Low_complexity Low_complexity 4 68 0 26 30 0 0 chr4 44630284 44630317 -139658345 + AT_rich Low_complexity Low_complexity 1 33 0 237 239 142 68 chr4 44630458 44630634 -139658028 - MER5A DNA MER1_type 0 189 1 1641 126 45 29 chr4 44630663 44630979 -139657683 - THE1B LTR MaLR 0 355 2 402 289 51 26 chr4 44631018 44631174 -139657488 - MER5B DNA MER1_type -16 162 3 237 159 0 0 chr4 44632362 44632406 -139656256 + CT-rich Low_complexity Low_complexity 3 46 0 21 0 0 0 chr4 44632734 44632755 -139655907 + AT_rich Low_complexity Low_complexity 1 21 0 203 375 92 0 chr4 44633080 44633200 -139655462 - L2 LINE L2 -21 3251 3121 249 214 0 18 chr4 44633207 44633263 -139655399 + L2 LINE L2 3153 3207 -65 22 70 0 0 chr4 44633999 44634042 -139654620 + AT_rich Low_complexity Low_complexity 1 43 0 184 114 0 29 chr4 44634385 44634420 -139654242 - L2 LINE L2 -567 2747 2714 302 308 0 0 chr4 44634733 44634798 -139653864 + MER81 DNA DNA 6 70 -44 1197 267 76 60 chr4 44635032 44635262 -139653400 - MER90 LTR ERV1 0 575 350 951 256 16 72 chr4 44635262 44635649 -139653013 + MLT1A1 LTR MaLR 1 365 0 1197 267 76 60 chr4 44635649 44635984 -139652678 - MER90 LTR ERV1 -225 350 1 297 368 0 0 chr4 44636394 44636508 -139652154 - L2 LINE L2 -1983 1331 1218 377 291 95 34 chr4 44636696 44636875 -139651787 + MIR SINE MIR 23 212 -50 420 291 7 40 chr4 44636961 44637109 -139651553 + MER77 LTR ERV1 54 196 -409 * 636 247 79 104 chr4 44637083 44637544 -139651118 + MER77 LTR ERV1 98 554 -51 401 378 17 52 chr4 44637801 44638148 -139650514 + L2 LINE L2 2631 2965 -349 239 222 69 0 chr4 44638236 44638308 -139650354 + (TGAA)n Simple_repeat Simple_repeat 1 77 0 26 74 0 0 chr4 44638953 44639007 -139649655 + AT_rich Low_complexity Low_complexity 1 54 0 22 35 0 0 chr4 44639332 44639361 -139649301 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr4 44639391 44639420 -139649242 + AT_rich Low_complexity Low_complexity 1 29 0 3098 146 10 2 chr4 44639688 44640201 -139648461 - L1PA15 LINE L1 -1 6164 5648 1567 221 3 3 chr4 44640208 44640566 -139648096 - L1PA13 LINE L1 -1730 5067 4710 1157 172 50 23 chr4 44640714 44640975 -139647687 + THE1C LTR MaLR 108 375 0 2945 191 3 14 chr4 44640976 44641552 -139647110 + THE1C-int LTR MaLR 2 571 -1080 4096 157 10 16 chr4 44641561 44642244 -139646418 + THE1C-int LTR MaLR 895 1573 -7 1579 174 54 64 chr4 44642244 44642617 -139646045 + THE1C LTR MaLR 7 375 0 8330 249 43 17 chr4 44642617 44644565 -139644097 - L1PA13 LINE L1 -2083 4714 2819 207 0 0 0 chr4 44644565 44644588 -139644074 + (TG)n Simple_repeat Simple_repeat 1 23 0 8330 249 43 17 chr4 44644588 44644602 -139644060 - L1PA13 LINE L1 -3978 2819 2807 2025 130 10 7 chr4 44644602 44644901 -139643761 - AluSx SINE Alu -10 302 3 8330 249 43 17 chr4 44644901 44646241 -139642421 - L1PA13 LINE L1 -3990 2807 1283 416 280 119 82 chr4 44646573 44646927 -139641735 - L2 LINE L2 -4 3309 2943 540 291 108 18 chr4 44647139 44647362 -139641300 + MIR SINE MIR 20 262 0 210 158 0 0 chr4 44647389 44647427 -139641235 + (TTA)n Simple_repeat Simple_repeat 3 40 0 18055 37 1 0 chr4 44647468 44650440 -139638222 + L1PA3 LINE L1 3176 6152 -3 19752 47 5 1 chr4 44650736 44653261 -139635401 - L1P LINE L1 -836 5310 2776 665 241 6 19 chr4 44653361 44653523 -139635139 - MER34 LTR ERV1 -372 170 11 2384 89 0 19 chr4 44654166 44654480 -139634182 + AluSg SINE Alu 1 308 -2 347 261 9 118 chr4 44654942 44655153 -139633509 - MIR SINE MIR -7 255 68 2029 133 14 0 chr4 44655370 44655663 -139632999 - AluSx SINE Alu -12 300 4 22 56 0 0 chr4 44656127 44656163 -139632499 + AT_rich Low_complexity Low_complexity 1 36 0 366 248 25 8 chr4 44656552 44656673 -139631989 - L1ME3A LINE L1 -316 5854 5732 275 275 18 9 chr4 44656714 44656823 -139631839 - L1ME3A LINE L1 -1559 4587 4478 214 224 41 0 chr4 44657248 44657297 -139631365 + GA-rich Low_complexity Low_complexity 1 51 0 274 374 98 6 chr4 44658495 44658669 -139629993 - MIR SINE MIR -14 248 59 730 231 34 130 chr4 44658730 44659085 -139629577 - MLT1A1 LTR MaLR -44 321 1 6061 237 87 31 chr4 44659091 44660726 -139627936 - MLT1A1-int LTR MaLR -7 1728 2 710 256 133 50 chr4 44660727 44661110 -139627552 - MSTC LTR MaLR -13 415 1 2191 127 0 0 chr4 44661538 44661846 -139626816 - AluSx SINE Alu -2 310 3 5932 217 68 49 chr4 44662252 44664544 -139624118 + L1MB3 LINE L1 3038 5410 -773 2185 104 3 0 chr4 44664544 44664831 -139623831 + AluSp SINE Alu 1 288 -25 5932 217 68 49 chr4 44664831 44665560 -139623102 + L1MB3 LINE L1 5410 6124 -59 279 273 67 47 chr4 44666033 44666183 -139622479 - L2 LINE L2 -55 3258 3106 1807 243 94 24 chr4 44666983 44667284 -139621378 + MER21B LTR ERV1 12 291 -572 189 0 0 0 chr4 44667284 44667305 -139621357 + (CCA)n Simple_repeat Simple_repeat 1 21 0 1807 243 94 24 chr4 44667305 44667671 -139620991 + MER21B LTR ERV1 291 794 -69 463 331 24 0 chr4 44667988 44668157 -139620505 - MER5B DNA MER1_type 0 178 6 7463 43 0 0 chr4 44668547 44669841 -139618821 - L1PA5 LINE L1 0 6154 4861 14515 55 5 0 chr4 44669841 44671700 -139616962 + L1PA5 LINE L1 3022 4890 -1256 193 342 171 8 chr4 44671947 44672064 -139616598 - L2 LINE L2 -16 3297 3162 2137 109 3 29 chr4 44672382 44672693 -139615969 + AluSx SINE Alu 6 308 -4 362 221 35 18 chr4 44672930 44673043 -139615619 - Charlie1a DNA MER1_type 0 1455 1341 853 228 0 0 chr4 44673089 44673282 -139615380 - L1P LINE L1 -1007 5139 4947 2974 226 45 28 chr4 44673316 44674226 -139614436 - Charlie1a DNA MER1_type -112 1343 418 661 287 22 0 chr4 44674234 44674415 -139614247 - Charlie1a DNA MER1_type -1259 196 12 1070 229 119 21 chr4 44674502 44674839 -139613823 + MLT1A2 LTR MaLR 1 370 -4 22 0 0 0 chr4 44674957 44674979 -139613683 + AT_rich Low_complexity Low_complexity 1 22 0 210 430 0 0 chr4 44675275 44675375 -139613287 - L2 LINE L2 -24 3289 3190 331 335 61 6 chr4 44676893 44677057 -139611605 - MIR SINE MIR -74 188 16 24 0 0 0 chr4 44677272 44677296 -139611366 + AT_rich Low_complexity Low_complexity 1 24 0 4305 132 34 18 chr4 44677296 44677310 -139611352 - L1MA3 LINE L1 -2 6303 6291 2144 123 0 10 chr4 44677310 44677618 -139611044 + AluSq SINE Alu 1 305 -8 4305 132 34 18 chr4 44677618 44678371 -139610291 - L1MA3 LINE L1 -14 6291 5524 13578 54 15 0 chr4 44678471 44680574 -139608088 + L1P2 LINE L1 3638 5774 -380 26591 78 2 3 chr4 44680674 44684226 -139604436 - L1P LINE L1 -2585 3561 11 305 238 12 12 chr4 44684234 44684314 -139604348 + MER39 LTR ERV1 628 707 0 23 0 0 0 chr4 44684435 44684458 -139604204 + AT_rich Low_complexity Low_complexity 1 23 0 385 347 37 11 chr4 44685197 44685387 -139603275 - L3 LINE CR1 -115 1462 1268 210 143 0 0 chr4 44686504 44686539 -139602123 + (TA)n Simple_repeat Simple_repeat 2 36 0 503 118 12 0 chr4 44686647 44686732 -139601930 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 1745 136 80 0 chr4 44686734 44687021 -139601641 - AluY SINE Alu 0 311 2 1222 239 51 27 chr4 44688258 44688593 -139600069 - MER82 DNA MER2_type -6 647 305 3939 143 48 63 chr4 44688602 44689393 -139599269 - LTR1 LTR ERV1 0 785 7 16757 159 36 20 chr4 44689406 44692384 -139596278 - HUERS-P2 LTR ERV1 0 3088 1 3810 133 54 83 chr4 44692402 44693196 -139595466 - LTR1 LTR ERV1 -14 771 1 1394 191 58 0 chr4 44693202 44693479 -139595183 - MER82 DNA MER2_type -360 293 1 27 62 0 0 chr4 44693634 44693682 -139594980 + AT_rich Low_complexity Low_complexity 1 48 0 1572 187 111 48 chr4 44694336 44694773 -139593889 - MER31A LTR ERV1 -4 539 1 204 301 233 0 chr4 44696239 44696342 -139592320 + MIR SINE MIR 50 176 -86 557 313 91 0 chr4 44696342 44696550 -139592112 + MIR SINE MIR 15 241 -21 967 253 107 30 chr4 44696712 44697076 -139591586 - MER39 LTR ERV1 -87 620 102 248 196 0 0 chr4 44697071 44697117 -139591545 - MER34 LTR ERV1 -496 46 1 * 293 170 0 0 chr4 44697190 44697237 -139591425 - MER34-int LTR ERV1 -166 6165 6119 635 208 26 26 chr4 44697242 44697396 -139591266 + MER39 LTR ERV1 554 707 0 201 343 152 0 chr4 44697491 44697590 -139591072 - L2 LINE L2 0 3313 3200 229 314 40 65 chr4 44697660 44697784 -139590878 - MIR SINE MIR -122 140 20 30 0 0 0 chr4 44697974 44698004 -139590658 + AT_rich Low_complexity Low_complexity 1 30 0 201 39 0 0 chr4 44698219 44698245 -139590417 + (TATG)n Simple_repeat Simple_repeat 3 28 0 192 341 114 42 chr4 44699156 44699323 -139589339 - L2 LINE L2 -584 2730 2552 283 246 87 8 chr4 44699450 44699576 -139589086 + L1MC1 LINE L1 2178 2313 -4083 2291 96 13 0 chr4 44700230 44700533 -139588129 + AluSg SINE Alu 1 307 -3 5464 209 28 5 chr4 44700594 44702065 -139586597 + L1MC1 LINE L1 4899 6401 -1 1418 269 69 22 chr4 44703681 44704186 -139584476 + L1MC4a LINE L1 5416 5944 -1864 675 111 0 10 chr4 44704221 44704320 -139584342 + MER4A LTR ERV1 1 98 -566 2323 64 0 0 chr4 44704334 44704651 -139584011 + AluY SINE Alu 1 317 0 1081 146 9 55 chr4 44704651 44705026 -139583636 + MER4B LTR ERV1 264 609 -1 30 27 0 0 chr4 44705280 44705317 -139583345 + AT_rich Low_complexity Low_complexity 1 37 0 1275 156 10 51 chr4 44705350 44705639 -139583023 - MER1B DNA MER1_type 0 339 1 799 278 95 14 chr4 44705641 44705925 -139582737 - MLT1I LTR MaLR -18 391 85 26 64 0 0 chr4 44707352 44707399 -139581263 + AT_rich Low_complexity Low_complexity 1 47 0 835 74 67 0 chr4 44707646 44707795 -139580867 + CT-rich Low_complexity Low_complexity 5 163 0 4889 233 40 60 chr4 44707837 44708116 -139580546 - L1M4 LINE L1 -1194 4952 4669 3331 39 2 2 chr4 44708116 44708523 -139580139 - L1PA3 LINE L1 -3 6152 5746 4889 233 40 60 chr4 44708523 44709490 -139579172 - L1M4 LINE L1 -1477 4669 3749 1875 147 3 0 chr4 44709490 44709782 -139578880 - AluSx SINE Alu -19 293 1 4889 233 40 60 chr4 44709782 44710310 -139578352 - L1M4 LINE L1 -2397 3749 3212 461 234 48 73 chr4 44710301 44710656 -139578006 - L1MEc LINE L1 -3965 2431 2086 * 580 291 134 26 chr4 44710782 44711151 -139577511 - L2 LINE L2 -307 3006 2594 344 279 133 42 chr4 44712856 44713021 -139575641 - MIR SINE MIR -49 213 34 2399 63 7 3 chr4 44713249 44713551 -139575111 - AluY SINE Alu -8 303 1 204 234 156 0 chr4 44713608 44713685 -139574977 + MIR SINE MIR 124 212 -50 1227 168 9 5 chr4 44713705 44713919 -139574743 - L1PB3 LINE L1 -1 6153 5939 660 324 37 4 chr4 44714767 44715008 -139573654 - MIR SINE MIR -13 249 1 995 284 46 5 chr4 44716791 44717161 -139571501 + L1ME2 LINE L1 4709 5093 -1053 1885 156 0 29 chr4 44717180 44717527 -139571135 - MER1B DNA MER1_type 0 337 1 1849 243 66 10 chr4 44717538 44718087 -139570575 + L1ME2 LINE L1 5237 5811 -353 1292 266 16 30 chr4 44718092 44718460 -139570202 - MLT1A2 LTR MaLR -11 363 1 896 224 12 29 chr4 44718460 44718706 -139569956 + L1ME2 LINE L1 5805 6046 -118 1742 132 24 17 chr4 44718726 44719015 -139569647 + AluSq SINE Alu 1 291 -22 2148 126 0 0 chr4 44719056 44719357 -139569305 + AluSc SINE Alu 1 301 -8 266 362 117 0 chr4 44719466 44719629 -139569033 + L2 LINE L2 2493 2674 -640 1631 205 35 79 chr4 44719642 44719851 -139568811 - MER67A LTR ERV1 0 543 326 268 42 0 42 chr4 44719860 44719908 -139568754 + (TTAA)n Simple_repeat Simple_repeat 3 48 0 1980 113 7 3 chr4 44719908 44720191 -139568471 - AluY SINE Alu -24 287 1 1631 205 35 79 chr4 44720191 44720464 -139568198 - MER67A LTR ERV1 -217 326 82 555 123 0 0 chr4 44720542 44720623 -139568039 - MER67A LTR ERV1 -462 81 1 849 317 54 46 chr4 44720623 44721247 -139567415 + L2 LINE L2 2682 3312 -1 27 0 0 0 chr4 44722134 44722161 -139566501 + AT_rich Low_complexity Low_complexity 1 27 0 1507 319 114 28 chr4 44723051 44724158 -139564504 + L2 LINE L2 2046 3313 0 258 256 32 80 chr4 44724773 44724898 -139563764 + MLT1I LTR MaLR 37 147 -262 5357 146 15 27 chr4 44725009 44725942 -139562720 + MER49 LTR ERV1 1 922 -1 1302 216 97 40 chr4 44726142 44726448 -139562214 - MLT2B1 LTR ERVL -104 416 88 1864 127 82 23 chr4 44726448 44726802 -139561860 + THE1C LTR MaLR 1 375 0 1302 216 97 40 chr4 44726802 44726824 -139561838 - MLT2B1 LTR ERVL -432 88 69 1822 101 0 0 chr4 44726834 44727072 -139561590 - AluSx SINE Alu -74 238 1 982 284 45 33 chr4 44728978 44729337 -139559325 - MER69 DNA AcHobo -846 380 18 189 323 48 0 chr4 44729354 44729416 -139559246 + MIR SINE MIR 29 93 -115 552 371 75 36 chr4 44730076 44730734 -139557928 + L2 LINE L2 2222 2904 -410 25 31 0 0 chr4 44731548 44731580 -139557082 + AT_rich Low_complexity Low_complexity 1 32 0 370 309 72 80 chr4 44732227 44732641 -139556021 + L1MC/D LINE L1 4502 4912 -1234 261 301 76 43 chr4 44732878 44733154 -139555508 + L1MC/D LINE L1 5311 5595 -2213 4273 76 9 2 chr4 44733164 44733732 -139554930 - L1P LINE L1 -4983 1163 592 351 22 0 0 chr4 44733732 44733778 -139554884 + L1PA6 LINE L1 6108 6153 -1 218 190 0 17 chr4 44733854 44733912 -139554750 + (TA)n Simple_repeat Simple_repeat 1 57 0 42 36 0 0 chr4 44734056 44734112 -139554550 + AT_rich Low_complexity Low_complexity 1 56 0 344 303 84 67 chr4 44734112 44734455 -139554207 - L2 LINE L2 -1477 1837 1489 225 281 135 0 chr4 44734617 44734706 -139553956 - L1MC/D LINE L1 -2294 5514 5414 1376 249 50 42 chr4 44734728 44735229 -139553433 - MLT1D LTR MaLR 0 505 1 965 104 35 6 chr4 44735870 44736043 -139552619 + CT-rich Low_complexity Low_complexity 3 180 0 1878 124 7 11 chr4 44736053 44736328 -139552334 - AluSq SINE Alu -39 274 1 869 252 19 80 chr4 44736332 44736709 -139551953 + LTR37B LTR ERV1 50 403 -65 2740 81 42 104 chr4 44737184 44737666 -139550996 - MLT2A2 LTR ERVL -1 452 1 599 308 106 10 chr4 44737719 44738160 -139550502 - LTR33 LTR ERVL -14 507 1 3653 90 39 8 chr4 44738803 44739338 -139549324 + MER41A LTR ERV1 1 552 -2 748 259 97 23 chr4 44740688 44740997 -139547665 - L1MB7 LINE L1 -41 6143 5812 622 268 82 33 chr4 44741008 44741251 -139547411 + L2 LINE L2 1649 1903 -1411 593 286 162 72 chr4 44741274 44741779 -139546883 + L2 LINE L2 2659 3215 -98 2151 187 78 0 chr4 44741860 44742255 -139546407 - MSTB LTR MaLR 0 426 1 271 288 66 61 chr4 44742392 44742590 -139546072 + MLT1H LTR MaLR 111 309 -240 1403 214 19 3 chr4 44742607 44742976 -139545686 - L1PA16 LINE L1 -751 5395 5021 * 2565 114 11 0 chr4 44742973 44743349 -139545313 + L1PA16 LINE L1 5414 5793 -373 2403 123 0 0 chr4 44743449 44743815 -139544847 + L1PA16 LINE L1 5801 6166 0 24 0 0 0 chr4 44743955 44743979 -139544683 + AT_rich Low_complexity Low_complexity 1 24 0 540 159 0 0 chr4 44744276 44744364 -139544298 + L1PA16 LINE L1 6030 6117 -49 240 86 0 0 chr4 44744489 44744524 -139544138 + (TA)n Simple_repeat Simple_repeat 2 36 0 1703 264 99 69 chr4 44744882 44746108 -139542554 + L1MC4 LINE L1 6690 7951 -91 1612 203 0 3 chr4 44746171 44746461 -139542201 - AluJb SINE Alu -20 292 4 1316 199 37 54 chr4 44746531 44746918 -139541744 + MLT2B3 LTR ERVL 183 554 0 372 256 70 3 chr4 44746927 44747127 -139541535 - LTR37A LTR ERV1 -114 312 38 777 279 86 21 chr4 44747459 44747832 -139540830 - L1MC4a LINE L1 -1600 6208 5812 4576 179 47 23 chr4 44747844 44748534 -139540128 - L1PB4 LINE L1 -3 6153 5481 2133 130 0 0 chr4 44748534 44748834 -139539828 - AluSq SINE Alu -13 300 1 4576 179 47 23 chr4 44748834 44749509 -139539153 - L1PB4 LINE L1 -675 5481 4757 1430 291 60 7 chr4 44749511 44750048 -139538614 - L1MC4a LINE L1 -1989 5819 5255 33 80 0 0 chr4 44750105 44750180 -139538482 + AT_rich Low_complexity Low_complexity 1 75 0 23 92 0 0 chr4 44750232 44750297 -139538365 + AT_rich Low_complexity Low_complexity 1 65 0 208 268 70 84 chr4 44750403 44750545 -139538117 + L2 LINE L2 2712 2851 -463 189 139 0 0 chr4 44750758 44750801 -139537861 + (TA)n Simple_repeat Simple_repeat 2 44 0 843 209 0 13 chr4 44750801 44750954 -139537708 - FRAM SINE Alu -15 151 1 301 305 86 16 chr4 44753699 44753827 -139534835 + MIR SINE MIR 105 241 -21 2896 289 55 46 chr4 44754134 44755912 -139532750 - L1MEc LINE L1 -4484 1797 35 552 364 57 4 chr4 44755979 44756207 -139532455 + MIR SINE MIR 23 262 0 10743 173 24 43 chr4 44757186 44760471 -139528191 + L1MA6 LINE L1 1670 4896 -2669 4193 159 15 15 chr4 44760472 44761345 -139527317 + L1MA6 LINE L1 5989 6862 -743 1405 305 40 6 chr4 44761795 44762267 -139526395 + ERVL LTR ERVL 4745 5232 -532 462 202 20 10 chr4 44762269 44762368 -139526294 + L1MA6 LINE L1 7307 7406 -313 265 214 14 14 chr4 44762368 44762438 -139526224 + ERVL-F LTR ERVL 5584 5653 -1 251 309 27 40 chr4 44762438 44762587 -139526075 + MLT2F LTR ERVL 1 147 -516 861 253 7 90 chr4 44762831 44763120 -139525542 + MLT2F LTR ERVL 397 661 -2 565 319 70 12 chr4 44763196 44763437 -139525225 - L2 LINE L2 -364 2950 2696 2203 87 0 3 chr4 44763913 44764200 -139524462 + AluSx SINE Alu 6 291 -21 460 291 85 60 chr4 44764210 44764725 -139523937 + L1M4b LINE L1 1374 2053 -4894 614 289 151 16 chr4 44764725 44765029 -139523633 - L2 LINE L2 -611 2703 2359 252 122 0 0 chr4 44765609 44765650 -139523012 + (TG)n Simple_repeat Simple_repeat 2 42 0 673 240 162 0 chr4 44766648 44766827 -139521835 - MER3 DNA MER1_type 0 209 2 1219 213 0 8 chr4 44767929 44768178 -139520484 - 7SLRNA srpRNA srpRNA -4 316 70 1197 201 35 127 chr4 44769984 44770386 -139518276 - MLT1A1 LTR MaLR 0 365 1 2017 121 0 0 chr4 44770655 44770935 -139517727 + AluSx SINE Alu 1 280 -32 234 0 0 0 chr4 44770936 44770962 -139517700 + (CAA)n Simple_repeat Simple_repeat 2 27 0 19179 68 12 5 chr4 44771019 44774386 -139514276 + L1PA6 LINE L1 2776 6149 -5 2199 121 0 9 chr4 44774393 44774708 -139513954 + AluSq SINE Alu 1 312 -1 23 0 0 0 chr4 44775167 44775190 -139513472 + AT_rich Low_complexity Low_complexity 1 23 0 1844 196 14 6 chr4 44777413 44777775 -139510887 + MLT1A1 LTR MaLR 1 365 0 659 344 90 19 chr4 44777987 44778353 -139510309 + MLT1H LTR MaLR 142 533 -16 2325 176 7 18 chr4 44778861 44779299 -139509363 + Tigger2a DNA MER2_type 2 434 0 1527 184 9 43 chr4 44779855 44780181 -139508481 - LTR62 LTR ERVK -404 315 1 2295 106 0 0 chr4 44780524 44780836 -139507826 - AluSx SINE Alu 0 312 1 345 24 0 0 chr4 44781728 44781770 -139506892 + (TTA)n Simple_repeat Simple_repeat 1 42 0 2034 214 89 39 chr4 44781772 44782291 -139506371 - MER74A LTR ERVL -11 547 3 265 296 30 53 chr4 44782616 44782748 -139505914 + MIR SINE MIR 88 216 -46 2075 143 22 22 chr4 44783046 44783409 -139505253 + THE1B LTR MaLR 2 364 0 4747 100 54 66 chr4 44783814 44785270 -139503392 - pTR5 LTR ERV1 0 2606 1524 494 299 35 17 chr4 44785305 44785479 -139503183 - MIR SINE MIR -74 188 12 180 0 0 0 chr4 44785662 44785682 -139502980 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 227 114 23 0 chr4 44786884 44786928 -139501734 + (TG)n Simple_repeat Simple_repeat 2 46 0 21 0 0 0 chr4 44787507 44787528 -139501134 + AT_rich Low_complexity Low_complexity 1 21 0 51 58 0 0 chr4 44788818 44788904 -139499758 + AT_rich Low_complexity Low_complexity 1 86 0 203 353 70 39 chr4 44789204 44789273 -139499389 + L2 LINE L2 2538 2603 -711 2226 142 17 3 chr4 44789273 44789632 -139499030 + THE1B LTR MaLR 1 364 0 203 353 70 39 chr4 44789632 44789718 -139498944 + L2 LINE L2 2603 2698 -616 4677 239 50 23 chr4 44789719 44792340 -139496322 + L1MCa LINE L1 5 3962 -2464 2257 144 42 31 chr4 44792345 44792574 -139496088 - L1M1 LINE L1 -590 5713 5488 1747 131 0 0 chr4 44792574 44792818 -139495844 - AluSx SINE Alu -23 289 46 2257 144 42 31 chr4 44792818 44793186 -139495476 - L1M1 LINE L1 -815 5488 5111 3095 184 34 5 chr4 44793186 44793797 -139494865 + L1MC1 LINE L1 5696 6328 -5 21 0 0 0 chr4 44793797 44793818 -139494844 + AT_rich Low_complexity Low_complexity 1 21 0 204 362 0 0 chr4 44794994 44795052 -139493610 + L2 LINE L2 3200 3257 -15 428 205 26 86 chr4 44795067 44795184 -139493478 + FLAM_C SINE Alu 14 123 -20 330 364 146 5 chr4 44795273 44795493 -139493169 + MIR SINE MIR 2 252 -10 2294 144 41 3 chr4 44795750 44796138 -139492524 + MER57A LTR ERV1 1 403 0 2903 180 18 76 chr4 44797459 44797778 -139490884 - LTR51 LTR ERV1 -2 669 412 1862 159 3 10 chr4 44797778 44798080 -139490582 + AluSx SINE Alu 1 300 -12 2903 180 18 76 chr4 44798080 44798470 -139490192 - LTR51 LTR ERV1 -259 412 1 1241 107 6 0 chr4 44798777 44798954 -139489708 - MER4E LTR ERV1 0 766 589 255 361 33 0 chr4 44798967 44799089 -139489573 + MIR SINE MIR 101 226 -36 1972 152 7 3 chr4 44799293 44799595 -139489067 - AluSx SINE Alu -9 303 1 3474 197 28 34 chr4 44799995 44800707 -139487955 - MER50 LTR ERV1 -26 708 1 252 0 0 0 chr4 44801093 44801121 -139487541 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1844 129 0 45 chr4 44801352 44801663 -139486999 - AluSc SINE Alu -10 299 3 445 296 127 33 chr4 44802085 44802298 -139486364 + MIR SINE MIR 30 262 0 1662 121 16 77 chr4 44802337 44802708 -139485954 - MER4A LTR ERV1 -2 662 256 540 141 0 11 chr4 44802709 44802801 -139485861 - MER4A LTR ERV1 -572 92 2 4105 181 50 15 chr4 44803706 44804566 -139484096 - L1MC1 LINE L1 -18 6315 5426 223 222 37 0 chr4 44804751 44804805 -139483857 - MIR SINE MIR -14 248 193 318 329 0 0 chr4 44804854 44804930 -139483732 + MIR SINE MIR 14 89 -173 993 240 106 34 chr4 44804930 44805317 -139483345 + MLT1C LTR MaLR 1 415 -52 21 0 0 0 chr4 44805579 44805600 -139483062 + AT_rich Low_complexity Low_complexity 1 21 0 428 344 58 22 chr4 44805651 44805875 -139482787 - MIR SINE MIR -21 241 10 374 329 193 26 chr4 44806158 44806547 -139482115 + L3 LINE CR1 968 1421 -156 2452 58 0 3 chr4 44806629 44806937 -139481725 + AluY SINE Alu 1 307 -4 300 309 181 7 chr4 44807597 44807746 -139480916 + MER5A DNA MER1_type 9 183 -6 445 264 90 14 chr4 44807849 44807993 -139480669 - L2 LINE L2 0 3313 3159 3001 243 43 37 chr4 44808003 44808878 -139479784 - L1MC1 LINE L1 -900 5246 4378 195 42 0 0 chr4 44808878 44808902 -139479760 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2314 53 0 3 chr4 44808904 44809187 -139479475 - AluY SINE Alu -29 282 1 3001 243 43 37 chr4 44809187 44809434 -139479228 - L1MC1 LINE L1 -1768 4378 4114 1817 279 81 11 chr4 44809447 44810165 -139478497 + L1ME2 LINE L1 5280 6047 -117 489 77 44 0 chr4 44810191 44810282 -139478380 + (TCTA)n Simple_repeat Simple_repeat 1 95 0 389 311 57 26 chr4 44810497 44810690 -139477972 + L2 LINE L2 2242 2440 -874 1813 186 44 26 chr4 44810743 44811279 -139477383 - MLT2A2 LTR ERVL -10 544 1 250 294 29 0 chr4 44811547 44811615 -139477047 + L2 LINE L2 3244 3313 0 192 381 0 12 chr4 44811616 44811700 -139476962 + L2 LINE L2 2715 2797 -517 413 248 79 10 chr4 44812446 44812547 -139476115 + MIR SINE MIR 5 112 -150 22 56 0 0 chr4 44813383 44813419 -139475243 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr4 44813791 44813812 -139474850 + AT_rich Low_complexity Low_complexity 1 21 0 469 304 42 57 chr4 44813950 44814233 -139474429 - L1MC4a LINE L1 -1944 5864 5586 2244 49 56 14 chr4 44814932 44815220 -139473442 - AluY SINE Alu -11 300 1 3947 105 10 0 chr4 44815598 44816188 -139472474 - L1PA8 LINE L1 -847 5299 4704 6140 68 17 1 chr4 44816188 44817009 -139471653 + L1PA8 LINE L1 5325 6159 -13 235 235 86 3 chr4 44817055 44817150 -139471512 - MLT1J2 LTR MaLR -310 177 67 233 361 109 0 chr4 44818122 44818241 -139470421 + L2 LINE L2 3137 3268 -4 572 225 31 0 chr4 44818674 44818803 -139469859 - MER3 DNA MER1_type 0 209 77 5411 109 9 42 chr4 44818807 44818938 -139469724 - L1PA12 LINE L1 0 6168 6034 446 0 19 0 chr4 44818938 44818992 -139469670 + (TG)n Simple_repeat Simple_repeat 2 56 0 1916 105 12 0 chr4 44818994 44819251 -139469411 - AluSq SINE Alu -53 260 1 5411 109 9 42 chr4 44819251 44819997 -139468665 - L1PA12 LINE L1 -135 6033 5317 10507 156 36 11 chr4 44820185 44822101 -139466561 - L1PA12 LINE L1 -873 5273 3310 234 288 0 0 chr4 44822111 44822170 -139466492 - MER3 DNA MER1_type -149 60 2 271 341 24 0 chr4 44822714 44822799 -139465863 + L2 LINE L2 1873 1959 -1355 200 434 0 0 chr4 44822919 44823025 -139465637 + L2 LINE L2 3200 3305 -8 222 333 21 21 chr4 44823541 44823634 -139465028 - L2 LINE L2 -254 3059 2967 302 119 0 0 chr4 44823641 44823683 -139464979 + MLT1A1 LTR MaLR 324 365 0 240 349 136 39 chr4 44823765 44824103 -139464559 - L2 LINE L2 -654 2660 2290 201 207 37 0 chr4 44824111 44824193 -139464469 + (TA)n Simple_repeat Simple_repeat 2 86 0 363 361 137 6 chr4 44824263 44824576 -139464086 - L2 LINE L2 -1044 2270 1917 614 322 198 35 chr4 44824577 44825465 -139463197 - L2 LINE L2 -1734 1580 548 1353 183 107 69 chr4 44825783 44826205 -139462457 - LTR21B LTR ERV1 0 438 1 2171 143 30 16 chr4 44826716 44827086 -139461576 + THE1C LTR MaLR 1 375 0 1837 169 50 83 chr4 44828243 44828686 -139459976 + MSTA LTR MaLR 1 428 0 6070 231 31 40 chr4 44828688 44829131 -139459531 + MLT1J1-int LTR MaLR 2 447 -1204 1426 234 3 7 chr4 44829131 44829434 -139459228 - AluJb SINE Alu 0 302 1 6070 231 31 40 chr4 44829434 44830739 -139457923 + MLT1J1-int LTR MaLR 447 1651 0 1920 189 58 19 chr4 44830739 44831151 -139457511 + MSTA LTR MaLR 1 428 0 350 304 27 0 chr4 44831254 44831366 -139457296 - MIR SINE MIR -6 256 142 487 343 36 36 chr4 44831564 44831867 -139456795 + MLT1J1 LTR MaLR 6 308 -138 7626 118 8 3 chr4 44832357 44833530 -139455132 + L1PA8 LINE L1 4138 5316 -830 * 7885 17 0 0 chr4 44833520 44834996 -139453666 + L1HS LINE L1 4680 6155 0 203 171 0 0 chr4 44835002 44835043 -139453619 + A-rich Low_complexity Low_complexity 1 41 0 6558 72 0 0 chr4 44835097 44835960 -139452702 + L1PA8 LINE L1 5293 6155 -17 267 92 46 0 chr4 44835960 44836025 -139452637 + (TA)n Simple_repeat Simple_repeat 1 68 0 1742 242 73 42 chr4 44836061 44836664 -139451998 - MLT1E3 LTR MaLR 0 624 3 414 0 0 0 chr4 44837853 44837899 -139450763 + (TG)n Simple_repeat Simple_repeat 2 47 0 183 42 0 0 chr4 44838247 44838271 -139450391 + (CAA)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chr4 44838492 44838513 -139450149 + AT_rich Low_complexity Low_complexity 1 21 0 315 319 86 37 chr4 44838539 44838702 -139449960 + MIR SINE MIR 17 187 -75 255 372 33 8 chr4 44838704 44838825 -139449837 - L2 LINE L2 -2 3311 3188 210 333 0 0 chr4 44838824 44838893 -139449769 + MIR SINE MIR 182 250 -12 * 2024 99 51 0 chr4 44839025 44839317 -139449345 + AluSp SINE Alu 3 309 -4 4186 103 2 13 chr4 44839676 44840288 -139448374 - L1PA13 LINE L1 -5 6158 5554 334 318 78 51 chr4 44840463 44840680 -139447982 + L2 LINE L2 2833 3055 -258 1050 121 17 0 chr4 44841347 44841520 -139447142 + L1MA4A LINE L1 6119 6294 -9 1838 130 61 66 chr4 44841760 44842053 -139446609 + THE1C LTR MaLR 1 293 -82 2274 117 0 0 chr4 44842053 44842360 -139446302 - AluSc SINE Alu -2 307 1 1838 130 61 66 chr4 44842360 44842443 -139446219 + THE1C LTR MaLR 293 375 0 254 318 23 78 chr4 44842524 44842653 -139446009 + L2 LINE L2 3151 3272 0 436 324 83 17 chr4 44842683 44842924 -139445738 - MIR SINE MIR 0 262 6 210 71 0 0 chr4 44843029 44843057 -139445605 + (TA)n Simple_repeat Simple_repeat 2 29 0 441 365 97 32 chr4 44843060 44843495 -139445167 + L3 LINE CR1 1094 1556 -21 542 350 58 63 chr4 44843823 44844660 -139444002 + L2 LINE L2 2438 3265 -7 340 221 26 0 chr4 44845227 44845304 -139443358 - MLT1G1 LTR MaLR -516 79 1 415 322 102 21 chr4 44845849 44846085 -139442577 + MIR SINE MIR 8 262 0 254 345 42 14 chr4 44846233 44846375 -139442287 - MIR SINE MIR -110 152 7 23 0 0 0 chr4 44847669 44847692 -139440970 + AT_rich Low_complexity Low_complexity 1 23 0 14550 175 19 32 chr4 44847766 44851191 -139437471 - L1MA1 LINE L1 0 6582 3195 2015 162 115 5 chr4 44851191 44851573 -139437089 + MSTA LTR MaLR 5 428 0 14550 175 19 32 chr4 44851573 44853107 -139435555 - L1MA1 LINE L1 -3387 3195 1643 374 53 53 0 chr4 44853110 44853167 -139435495 - L1M1 LINE L1 -4619 2946 2887 324 41 61 0 chr4 44853167 44853216 -139435446 - L1M1 LINE L1 -4622 2943 2892 334 58 58 0 chr4 44853218 44853270 -139435392 - L1M1 LINE L1 -4619 2946 2892 13803 187 67 21 chr4 44853272 44856069 -139432593 - L1M1 LINE L1 -4619 2946 22 2047 130 13 0 chr4 44856292 44856592 -139432070 + AluSx SINE Alu 1 304 -8 210 333 62 0 chr4 44857892 44857973 -139430689 - L2 LINE L2 -39 3233 3148 231 340 67 20 chr4 44858986 44859136 -139429526 + L3 LINE CR1 1221 1377 -200 22 35 0 0 chr4 44859442 44859471 -139429191 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr4 44859706 44859729 -139428933 + AT_rich Low_complexity Low_complexity 1 23 0 235 260 208 0 chr4 44861825 44861902 -139426760 + MIR SINE MIR 50 142 -120 31 44 0 0 chr4 44862278 44862323 -139426339 + AT_rich Low_complexity Low_complexity 1 45 0 521 194 47 76 chr4 44862368 44862579 -139426083 + L1MC5 LINE L1 7722 7926 -35 2384 66 20 0 chr4 44863526 44863828 -139424834 + AluY SINE Alu 1 308 -3 407 262 151 0 chr4 44863834 44864006 -139424656 + L1M4 LINE L1 2731 2928 -3218 1630 252 40 17 chr4 44864024 44864496 -139424166 - L1MD2 LINE L1 -4 6355 5873 799 214 23 23 chr4 44864501 44864716 -139423946 - L1MD2 LINE L1 -595 5764 5550 * 976 254 101 63 chr4 44864714 44865509 -139423153 - L1MDa LINE L1 -3893 2513 1777 1145 176 96 35 chr4 44865543 44865855 -139422807 - L1MDa LINE L1 -4756 1650 1320 1101 221 55 17 chr4 44865865 44866303 -139422359 - MLT1D LTR MaLR -5 500 12 1620 273 39 84 chr4 44866310 44866756 -139421906 - MLT1D-int LTR MaLR 0 1371 970 2395 102 0 0 chr4 44866756 44867069 -139421593 - AluSp SINE Alu 0 313 1 1620 273 39 84 chr4 44867069 44867363 -139421299 - MLT1D-int LTR MaLR -401 970 664 1996 254 31 44 chr4 44867430 44868084 -139420578 - MLT1D-int LTR MaLR -726 645 1 1641 261 50 3 chr4 44868193 44868573 -139420089 - MLT1D LTR MaLR -107 398 1 295 203 29 14 chr4 44868634 44868703 -139419959 - L1MDa LINE L1 -5096 1313 1244 * 942 278 31 0 chr4 44868700 44868927 -139419735 - L1MDa LINE L1 -6143 266 33 257 150 0 0 chr4 44868944 44868984 -139419678 + MSTC LTR MaLR 2 41 -387 28 0 0 0 chr4 44869181 44869209 -139419453 + AT_rich Low_complexity Low_complexity 1 28 0 293 250 22 43 chr4 44870448 44870540 -139418122 - LTR33 LTR ERVL -1 520 431 255 200 0 0 chr4 44870546 44870591 -139418071 - MER69 DNA AcHobo -121 56 12 372 191 68 0 chr4 44870646 44870793 -139417869 + (TA)n Simple_repeat Simple_repeat 2 158 0 244 174 81 0 chr4 44870850 44870936 -139417726 + (TA)n Simple_repeat Simple_repeat 2 94 0 257 50 99 30 chr4 44870981 44871082 -139417580 + (TA)n Simple_repeat Simple_repeat 2 109 0 276 188 81 7 chr4 44871111 44871260 -139417402 + (TA)n Simple_repeat Simple_repeat 1 160 0 4185 241 47 17 chr4 44871361 44871557 -139417105 - L1PA13 LINE L1 -3911 2886 2697 207 0 0 0 chr4 44871557 44871580 -139417082 + (TG)n Simple_repeat Simple_repeat 1 23 0 4185 241 47 17 chr4 44871580 44871594 -139417068 - L1PA13 LINE L1 -4100 2697 2685 1997 130 10 7 chr4 44871594 44871893 -139416769 - AluSx SINE Alu -10 302 3 4185 241 47 17 chr4 44871893 44873233 -139415429 - L1PA13 LINE L1 -4112 2685 1283 430 283 122 82 chr4 44873565 44873918 -139414744 - L2 LINE L2 -4 3309 2943 545 291 108 18 chr4 44874130 44874353 -139414309 + MIR SINE MIR 20 262 0 210 158 0 0 chr4 44874380 44874418 -139414244 + (TTA)n Simple_repeat Simple_repeat 3 40 0 13611 46 5 0 chr4 44874459 44876165 -139412497 + L1P LINE L1 3176 4890 -1256 199 342 171 8 chr4 44876412 44876529 -139412133 - L2 LINE L2 -16 3297 3162 2122 109 3 29 chr4 44876847 44877159 -139411503 + AluSx SINE Alu 6 309 -3 369 221 35 18 chr4 44877396 44877509 -139411153 - Charlie1a DNA MER1_type 0 1455 1341 856 228 0 0 chr4 44877555 44877748 -139410914 - L1P LINE L1 -1007 5139 4947 3057 226 45 28 chr4 44877782 44878692 -139409970 - Charlie1a DNA MER1_type -112 1343 418 671 287 22 0 chr4 44878700 44878881 -139409781 - Charlie1a DNA MER1_type -1259 196 12 1063 229 119 21 chr4 44878968 44879305 -139409357 + MLT1A2 LTR MaLR 1 370 -4 22 0 0 0 chr4 44879423 44879445 -139409217 + AT_rich Low_complexity Low_complexity 1 22 0 214 429 0 8 chr4 44879741 44879860 -139408802 - L2 LINE L2 -24 3289 3172 337 335 61 6 chr4 44881358 44881522 -139407140 - MIR SINE MIR -74 188 16 24 0 0 0 chr4 44881737 44881761 -139406901 + AT_rich Low_complexity Low_complexity 1 24 0 13118 190 31 23 chr4 44881761 44881775 -139406887 - L1MA2 LINE L1 -1 7722 7710 2113 126 0 10 chr4 44881775 44882084 -139406578 + AluSq SINE Alu 1 306 -7 13118 190 31 23 chr4 44882084 44883125 -139405537 - L1MA2 LINE L1 -13 7710 6678 2074 152 91 10 chr4 44883125 44883521 -139405141 + MSTA LTR MaLR 1 428 0 13118 190 31 23 chr4 44883521 44885066 -139403596 - L1MA2 LINE L1 -1045 6678 5146 198 71 0 0 chr4 44885066 44885094 -139403568 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 13118 190 31 23 chr4 44885094 44885844 -139402818 - L1MA2 LINE L1 -2577 5146 4403 1952 214 94 4 chr4 44885844 44886311 -139402351 - LTR22 LTR ERVK 0 509 1 13118 190 31 23 chr4 44886311 44888076 -139400586 - L1MA2 LINE L1 -3320 4403 2653 5187 148 9 6 chr4 44888076 44889188 -139399474 - L1PA13 LINE L1 -1 6162 5042 13118 190 31 23 chr4 44889188 44889309 -139399353 - L1MA2 LINE L1 -5070 2653 2534 3031 51 2 10 chr4 44889309 44889702 -139398960 - L1PA5 LINE L1 -1 6153 5764 13118 190 31 23 chr4 44889702 44891843 -139396819 - L1MA2 LINE L1 -5189 2534 11 683 271 33 28 chr4 44892077 44892291 -139396371 + MIR SINE MIR 45 259 -3 195 204 0 0 chr4 44892639 44892683 -139395979 + (CA)n Simple_repeat Simple_repeat 2 45 0 243 358 85 34 chr4 44893572 44893748 -139394914 - L3b LINE CR1 -13 1570 1386 23 54 0 0 chr4 44893762 44893799 -139394863 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr4 44894148 44894169 -139394493 + AT_rich Low_complexity Low_complexity 1 21 0 5929 49 5 0 chr4 44894271 44895005 -139393657 - L1PA4 LINE L1 -11 6144 5407 22616 35 2 0 chr4 44895005 44897798 -139390864 + L1P LINE L1 2622 5420 -734 23 0 0 0 chr4 44898115 44898138 -139390524 + AT_rich Low_complexity Low_complexity 1 23 0 2321 101 0 0 chr4 44901195 44901502 -139387160 - AluSg SINE Alu -3 307 1 23 33 0 0 chr4 44901527 44901557 -139387105 + AT_rich Low_complexity Low_complexity 1 30 0 846 38 19 0 chr4 44901641 44901746 -139386916 + L1PA3 LINE L1 6049 6155 0 30 0 0 0 chr4 44901759 44901789 -139386873 + AT_rich Low_complexity Low_complexity 1 30 0 244 244 12 81 chr4 44903024 44903110 -139385552 - MER116 DNA Mariner 0 80 1 216 200 0 0 chr4 44903238 44903293 -139385369 + (TCTA)n Simple_repeat Simple_repeat 3 57 0 321 82 0 0 chr4 44903343 44903392 -139385270 + (CA)n Simple_repeat Simple_repeat 2 50 0 331 252 92 15 chr4 44903408 44903539 -139385123 - L1MC/D LINE L1 -1981 7246 7106 812 292 50 0 chr4 44903552 44903812 -139384850 - L1MC/D LINE L1 -2163 7064 6792 240 337 35 53 chr4 44903988 44904362 -139384300 - L1MC/D LINE L1 -1059 6506 6140 23 0 0 0 chr4 44904423 44904446 -139384216 + AT_rich Low_complexity Low_complexity 1 23 0 1503 182 37 34 chr4 44904655 44904951 -139383711 - AluJb SINE Alu -15 297 1 541 269 50 114 chr4 44905878 44906353 -139382309 + LTR16A1 LTR ERVL 13 457 0 26 30 0 0 chr4 44907361 44907394 -139381268 + AT_rich Low_complexity Low_complexity 1 33 0 1629 164 4 0 chr4 44907679 44907953 -139380709 + AluSx SINE Alu 1 275 -37 402 21 0 0 chr4 44907959 44908006 -139380656 + (CAAG)n Simple_repeat Simple_repeat 2 48 0 284 162 0 29 chr4 44908026 44908094 -139380568 + GA-rich Low_complexity Low_complexity 3 68 0 185 381 0 0 chr4 44908399 44908462 -139380200 + L2 LINE L2 3004 3066 -247 1575 228 97 3 chr4 44908570 44908951 -139379711 - MLT1C LTR MaLR 0 467 51 261 0 0 0 chr4 44909418 44909447 -139379215 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 484 278 62 0 chr4 44909894 44910056 -139378606 + L1ME1 LINE L1 5989 6160 -6 21 0 0 0 chr4 44910449 44910470 -139378192 + AT_rich Low_complexity Low_complexity 1 21 0 248 155 0 35 chr4 44911083 44911141 -139377521 + C-rich Low_complexity Low_complexity 5 60 0 2385 268 98 36 chr4 44911147 44912411 -139376251 - L1MC/D LINE L1 -2517 5048 3864 1892 171 93 18 chr4 44912411 44912809 -139375853 + MSTA LTR MaLR 1 428 0 2385 268 98 36 chr4 44912809 44913187 -139375475 - L1MC/D LINE L1 -3701 3864 3511 1667 143 207 11 chr4 44913187 44913545 -139375117 - MSTA LTR MaLR 0 428 1 2385 268 98 36 chr4 44913545 44914582 -139374080 - L1MC/D LINE L1 -4054 3511 2175 13438 174 22 6 chr4 44915033 44917469 -139371193 + L1M1 LINE L1 1136 3610 -3955 13897 186 25 35 chr4 44917473 44920276 -139368386 + L1M1 LINE L1 15 2788 -4777 3737 126 59 0 chr4 44920291 44920886 -139367776 + L1PA13 LINE L1 5532 6161 -2 2537 200 65 21 chr4 44920888 44921490 -139367172 + L1M1 LINE L1 3032 3606 -3959 1546 173 14 0 chr4 44921490 44921794 -139366868 + AluSx SINE Alu 1 308 0 2537 200 65 21 chr4 44921794 44922363 -139366299 + L1M1 LINE L1 3606 4257 -3308 7644 22 2 1 chr4 44922379 44924026 -139364636 - L1PA3 LINE L1 -3 6152 4508 3425 61 14 0 chr4 44924026 44924469 -139364193 + L1P LINE L1 4442 4890 -1256 877 152 18 6 chr4 44924929 44925094 -139363568 + L1MB3 LINE L1 6014 6180 -3 23 0 0 0 chr4 44925872 44925895 -139362767 + AT_rich Low_complexity Low_complexity 1 23 0 1744 164 0 35 chr4 44925903 44926214 -139362448 - AluSx SINE Alu -8 304 5 580 124 0 0 chr4 44926277 44926366 -139362296 + AluJ/FRAM SINE Alu 221 309 -3 21 57 0 0 chr4 44926724 44926759 -139361903 + AT_rich Low_complexity Low_complexity 1 35 0 1869 144 3 3 chr4 44928034 44928325 -139360337 + AluSx SINE Alu 3 293 -19 1203 226 155 49 chr4 44929190 44929680 -139358982 + MLT1F LTR MaLR 1 542 0 807 259 57 0 chr4 44929827 44930039 -139358623 + MER58A DNA MER1_type 1 224 0 21 0 0 0 chr4 44930096 44930117 -139358545 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 44930309 44930330 -139358332 + AT_rich Low_complexity Low_complexity 1 21 0 671 189 71 92 chr4 44930584 44930822 -139357840 - MER110A LTR ERV1 -2 466 234 432 302 24 30 chr4 44930929 44931098 -139357564 + L2 LINE L2 3144 3311 -2 22 0 0 0 chr4 44931653 44931675 -139356987 + AT_rich Low_complexity Low_complexity 1 22 0 202 200 156 22 chr4 44931907 44931997 -139356665 + MIR SINE MIR 83 184 -78 1022 253 69 31 chr4 44932430 44932790 -139355872 - MLT1A2 LTR MaLR 0 374 1 180 0 0 0 chr4 44932950 44932970 -139355692 + (CA)n Simple_repeat Simple_repeat 1 20 0 22 35 0 0 chr4 44933934 44933963 -139354699 + AT_rich Low_complexity Low_complexity 1 29 0 1035 194 235 0 chr4 44934026 44934350 -139354312 + L1MA4A LINE L1 5881 6280 -23 24 53 0 0 chr4 44934868 44934906 -139353756 + AT_rich Low_complexity Low_complexity 1 38 0 844 281 38 0 chr4 44935172 44935410 -139353252 + MIR SINE MIR 5 251 -11 213 39 0 0 chr4 44935527 44935553 -139353109 + (CAA)n Simple_repeat Simple_repeat 2 27 0 22 80 0 0 chr4 44936495 44936545 -139352117 + AT_rich Low_complexity Low_complexity 1 50 0 255 31 0 0 chr4 44937610 44937642 -139351020 + (CA)n Simple_repeat Simple_repeat 1 32 0 25 31 0 0 chr4 44937940 44937972 -139350690 + AT_rich Low_complexity Low_complexity 1 32 0 292 357 75 18 chr4 44938417 44938644 -139350018 + MIR SINE MIR 11 250 -12 204 163 0 0 chr4 44938646 44938689 -139349973 + (TG)n Simple_repeat Simple_repeat 2 44 0 27 0 0 0 chr4 44939168 44939195 -139349467 + AT_rich Low_complexity Low_complexity 1 27 0 940 141 0 22 chr4 44939417 44939601 -139349061 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 853 168 5 9 chr4 44939601 44939822 -139348840 + GA-rich Low_complexity Low_complexity 1 220 0 2223 115 41 0 chr4 44939836 44940175 -139348487 - L1PA13 LINE L1 -191 5972 5620 1248 125 0 0 chr4 44940175 44940358 -139348304 + L1PA13 LINE L1 5975 6158 -5 1364 197 36 11 chr4 44940370 44940649 -139348013 + AluJb SINE Alu 10 295 -17 600 170 23 23 chr4 44940660 44940831 -139347831 + GA-rich Low_complexity Low_complexity 2 172 0 2034 141 3 0 chr4 44941025 44941329 -139347333 + AluSx SINE Alu 1 305 -7 351 316 51 42 chr4 44941458 44941673 -139346989 - LTR16B LTR ERVL -247 217 1 977 255 14 39 chr4 44941867 44942149 -139346513 - MLT2C1 LTR ERVL -106 291 17 22 35 0 0 chr4 44942520 44942549 -139346113 + AT_rich Low_complexity Low_complexity 1 29 0 2054 118 0 10 chr4 44942570 44942866 -139345796 - AluSc SINE Alu -16 293 1 21 82 0 0 chr4 44942926 44942975 -139345687 + AT_rich Low_complexity Low_complexity 1 49 0 21 57 0 0 chr4 44943083 44943118 -139345544 + AT_rich Low_complexity Low_complexity 1 35 0 437 215 35 35 chr4 44943220 44943364 -139345298 + L1MEc LINE L1 1023 1166 -5230 2023 109 7 10 chr4 44943566 44943869 -139344793 + AluSx SINE Alu 1 302 -10 257 344 0 8 chr4 44943890 44944012 -139344650 + L1MEc LINE L1 1250 1370 -4845 45 45 0 0 chr4 44944015 44944081 -139344581 + AT_rich Low_complexity Low_complexity 1 66 0 1409 270 41 39 chr4 44944115 44944825 -139343837 + L1MEc LINE L1 1565 2275 -4121 726 261 29 10 chr4 44944827 44945034 -139343628 - MER58C DNA MER1_type -2 213 3 338 275 42 26 chr4 44945037 44945230 -139343432 + L1MEc LINE L1 3112 3307 -2908 21 0 0 0 chr4 44945328 44945349 -139343313 + AT_rich Low_complexity Low_complexity 1 21 0 1664 162 75 25 chr4 44945894 44946252 -139342410 + MLT1B LTR MaLR 15 390 0 270 291 128 18 chr4 44946318 44946545 -139342117 + L1M4 LINE L1 2112 2363 -3783 884 304 71 65 chr4 44946614 44947274 -139341388 - PABL_B LTR ERV1 0 667 4 282 302 117 6 chr4 44947521 44947700 -139340962 + HAL1 LINE L1 1704 1902 -605 225 189 0 57 chr4 44948192 44948245 -139340417 + HAL1 LINE L1 2259 2308 -199 637 176 24 0 chr4 44950024 44950149 -139338513 - L1MA9 LINE L1 -362 5950 5823 968 221 53 50 chr4 44950153 44950475 -139338187 + L1MA9 LINE L1 5952 6274 -38 2091 81 3 52 chr4 44950782 44951092 -139337570 + AluY SINE Alu 2 296 -15 4711 156 51 27 chr4 44951514 44952264 -139336398 + L1PB4 LINE L1 5026 5757 -399 327 85 0 0 chr4 44952264 44952311 -139336351 + (CA)n Simple_repeat Simple_repeat 2 48 0 279 0 0 0 chr4 44952310 44952341 -139336321 + (TA)n Simple_repeat Simple_repeat 1 31 0 * 4711 156 51 27 chr4 44952311 44952707 -139335955 + L1PB4 LINE L1 5757 6154 -2 192 219 0 0 chr4 44953000 44953041 -139335621 - L2 LINE L2 -5 3308 3268 21 71 0 0 chr4 44953760 44953802 -139334860 + AT_rich Low_complexity Low_complexity 1 42 0 247 316 26 26 chr4 44955026 44955102 -139333560 + MER91A DNA MER1_type 5 80 -116 425 71 0 0 chr4 45006508 45006564 -139282098 + AluSc SINE Alu 235 290 -19 2152 78 61 0 chr4 45006582 45006875 -139281787 - AluY SINE Alu 0 311 1 3664 82 0 11 chr4 45007543 45008068 -139280594 - L1PA3 LINE L1 -2 6153 5635 249 319 205 12 chr4 45008689 45008855 -139279807 - MIR SINE MIR -36 226 29 322 98 20 0 chr4 45009205 45009256 -139279406 - MER53 DNA DNA -137 52 1 619 187 6 84 chr4 45009438 45009604 -139279058 + MER39 LTR ERV1 1 153 -554 3367 193 20 17 chr4 45009766 45010527 -139278135 - L1MC2 LINE L1 -11 6333 5571 314 169 0 0 chr4 45010654 45010713 -139277949 + MLT1A1 LTR MaLR 10 68 -297 6173 81 11 11 chr4 45010901 45012207 -139276455 + SVA Other Other 1 1384 -2 263 352 52 34 chr4 45012289 45012606 -139276056 - L2 LINE L2 -412 2902 2583 805 204 74 17 chr4 45012718 45012894 -139275768 + MER97c DNA MER1_type? 24 209 -881 23 68 0 0 chr4 45013144 45013188 -139275474 + AT_rich Low_complexity Low_complexity 1 44 0 621 256 26 0 chr4 45013757 45013913 -139274749 + MLT1A1 LTR MaLR 204 363 -2 266 258 67 98 chr4 45013929 45014123 -139274539 + L2 LINE L2 3114 3301 -12 1876 136 21 7 chr4 45014123 45014410 -139274252 + AluSg SINE Alu 1 291 -19 1320 253 36 71 chr4 45014465 45014904 -139273758 - LTR40b LTR ERVL -36 426 3 1198 87 12 6 chr4 45016183 45016355 -139272307 + L1PB1 LINE L1 5978 6150 -1 897 165 6 0 chr4 45016664 45016822 -139271840 + L1PA16 LINE L1 5997 6155 -11 373 301 17 0 chr4 45017076 45017177 -139271485 + MIR SINE MIR 45 152 -62 505 302 94 42 chr4 45017241 45017453 -139271209 - MIR SINE MIR -25 237 15 8873 155 37 18 chr4 45017880 45018817 -139269845 + Tigger1 DNA MER2_type 8 925 -1493 1914 131 29 0 chr4 45018817 45019141 -139269521 - AluSx SINE Alu 0 332 1 8873 155 37 18 chr4 45019141 45019474 -139269188 + Tigger1 DNA MER2_type 925 1250 -1168 7893 107 1 0 chr4 45019474 45021415 -139267247 + L1PA7 LINE L1 4193 6143 -11 8873 155 37 18 chr4 45021415 45021734 -139266928 + Tigger1 DNA MER2_type 1250 1630 -788 26 50 0 0 chr4 45021734 45021774 -139266888 + AT_rich Low_complexity Low_complexity 1 40 0 326 71 0 0 chr4 45021787 45021829 -139266833 + Tigger1 DNA MER2_type 1615 1656 -762 1277 296 140 11 chr4 45021829 45022349 -139266313 + L2 LINE L2 2050 2636 -678 722 301 119 30 chr4 45022342 45022804 -139265858 - L2 LINE L2 -414 2900 2398 * 765 175 0 7 chr4 45022927 45023064 -139265598 + FLAM_C SINE Alu 1 136 -7 433 330 26 42 chr4 45023250 45023441 -139265221 - L3 LINE CR1 -85 1492 1305 302 302 38 9 chr4 45023507 45023613 -139265049 - MER117 DNA MER1_type -48 149 41 480 288 61 58 chr4 45023983 45024296 -139264366 + HAL1b LINE L1 432 745 -603 395 266 121 32 chr4 45024309 45024648 -139264014 + HAL1b LINE L1 860 1228 -120 29 78 0 0 chr4 45024775 45024839 -139263823 + AT_rich Low_complexity Low_complexity 1 64 0 306 281 73 0 chr4 45024855 45024937 -139263725 + MIR SINE MIR 126 213 -49 203 239 0 60 chr4 45024978 45025095 -139263567 + (TATAA)n Simple_repeat Simple_repeat 5 114 0 814 341 13 56 chr4 45025226 45025675 -139262987 + L1PA16 LINE L1 123 552 -6287 4533 254 11 4 chr4 45025685 45027086 -139261576 + L1PA16 LINE L1 2767 4178 -2671 * 5006 232 11 25 chr4 45027071 45028473 -139260189 + L1PA16 LINE L1 5486 6860 -9 23 0 0 0 chr4 45028910 45028933 -139259729 + AT_rich Low_complexity Low_complexity 1 23 0 1435 188 7 14 chr4 45030625 45030901 -139257761 + AluJo SINE Alu 37 310 -2 24 67 0 0 chr4 45031081 45031126 -139257536 + AT_rich Low_complexity Low_complexity 1 45 0 623 156 101 0 chr4 45031193 45031302 -139257360 - MSTD LTR MaLR -4 392 273 468 233 10 0 chr4 45031324 45031427 -139257235 - MSTD LTR MaLR -292 104 1 188 361 59 50 chr4 45033569 45033688 -139254974 + L2 LINE L2 3147 3266 -6 23 33 0 0 chr4 45034560 45034590 -139254072 + AT_rich Low_complexity Low_complexity 1 30 0 1241 102 6 0 chr4 45035028 45035195 -139253467 + AluSc SINE Alu 2 169 -140 34516 35 1 0 chr4 45035296 45040270 -139248392 + L1PA3 LINE L1 1175 6155 0 338 220 33 55 chr4 45041094 45041185 -139247477 + MIR SINE MIR 1 89 -173 3448 106 10 6 chr4 45041185 45041694 -139246968 + MER9 LTR ERVK 1 511 0 2699 176 103 48 chr4 45041815 45042485 -139246177 + MER39 LTR ERV1 1 707 0 22 0 0 0 chr4 45042762 45042784 -139245878 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 45043074 45043095 -139245567 + AT_rich Low_complexity Low_complexity 1 21 0 490 312 136 70 chr4 45044032 45044872 -139243790 + L2 LINE L2 1684 2578 -736 255 61 0 0 chr4 45044929 45044962 -139243700 + (TG)n Simple_repeat Simple_repeat 1 33 0 2346 145 51 13 chr4 45044962 45045410 -139243252 - L1MB1 LINE L1 -15 6153 5689 684 94 0 0 chr4 45045410 45045506 -139243156 + L1MB1 LINE L1 5588 5683 -651 182 364 6 49 chr4 45045506 45045668 -139242994 + L2 LINE L2 2618 2772 -542 319 188 21 62 chr4 45045732 45045828 -139242834 + MER53 DNA DNA 98 189 0 201 74 0 0 chr4 45045942 45045969 -139242693 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 588 295 106 11 chr4 45046068 45046387 -139242275 + MLT1J1 LTR MaLR 69 377 -73 34 0 0 0 chr4 45046863 45046897 -139241765 + AT_rich Low_complexity Low_complexity 1 34 0 834 292 24 0 chr4 45046923 45047132 -139241530 - MER58A DNA MER1_type 0 224 11 243 162 15 29 chr4 45047241 45047309 -139241353 + CT-rich Low_complexity Low_complexity 3 69 0 370 297 75 0 chr4 45047671 45047850 -139240812 - L1MC/D LINE L1 -741 5687 5494 639 284 81 36 chr4 45047864 45048086 -139240576 - MIR SINE MIR -14 248 17 244 257 67 77 chr4 45048217 45048517 -139240145 - L1MC/D LINE L1 -810 5405 5109 740 261 81 44 chr4 45048522 45049140 -139239522 - L1MC/D LINE L1 -1194 5021 4381 245 342 11 43 chr4 45049149 45049333 -139239329 - L1MC/D LINE L1 -2057 4158 3981 4712 99 18 16 chr4 45049361 45050069 -139238593 - L1PB1 LINE L1 -5 6146 5437 232 307 84 18 chr4 45050069 45050294 -139238368 - L1MC/D LINE L1 -2221 3994 3755 265 259 15 76 chr4 45050710 45050841 -139237821 - L1MC/D LINE L1 -2588 3627 3505 571 289 128 53 chr4 45050881 45051350 -139237312 + MLT1H LTR MaLR 3 549 0 240 154 19 19 chr4 45051350 45051402 -139237260 + MLT1H-int LTR MaLR 1 52 -1683 359 365 17 12 chr4 45051455 45051696 -139236966 + MLT1H-int LTR MaLR 303 544 -827 253 304 61 14 chr4 45052216 45052364 -139236298 - L1MC/D LINE L1 -6211 185 31 417 324 65 88 chr4 45052561 45052959 -139235703 - L1MEd LINE L1 -5664 455 67 532 301 51 42 chr4 45053168 45053399 -139235263 + L1ME3A LINE L1 4923 5151 -995 2292 104 55 0 chr4 45053399 45053744 -139234918 - THE1B LTR MaLR 0 364 1 532 301 51 42 chr4 45053744 45053984 -139234678 + L1ME3A LINE L1 5151 5398 -748 1347 206 180 13 chr4 45054037 45054425 -139234237 + MLT1D LTR MaLR 51 503 -2 611 243 174 18 chr4 45054454 45054730 -139233932 + L1ME3A LINE L1 5851 6169 -1 565 168 32 0 chr4 45055777 45055902 -139232760 + L1MB7 LINE L1 6056 6184 0 725 252 187 19 chr4 45056273 45056487 -139232175 + MIR SINE MIR 13 262 0 278 314 169 0 chr4 45056977 45057101 -139231561 - L3b LINE CR1 -43 1540 1396 1834 316 46 43 chr4 45057780 45058945 -139229717 - L2 LINE L2 -4 3309 2147 1977 139 27 0 chr4 45058951 45059288 -139229374 - L1MA9 LINE L1 -176 6136 5791 629 231 0 0 chr4 45059286 45059420 -139229242 + L1MA9 LINE L1 6157 6290 -22 * 945 254 73 50 chr4 45059433 45059776 -139228886 - L2 LINE L2 -1157 2157 1807 21 0 0 0 chr4 45060223 45060244 -139228418 + AT_rich Low_complexity Low_complexity 1 21 0 208 250 0 42 chr4 45061038 45061110 -139227552 + A-rich Low_complexity Low_complexity 3 71 0 450 351 42 5 chr4 45061475 45061666 -139226996 + MIR SINE MIR 63 260 -2 7908 64 0 11 chr4 45061951 45062991 -139225671 + L1P LINE L1 66 1094 -5052 191 307 20 69 chr4 45063695 45063796 -139224866 - L2 LINE L2 -201 3071 2976 793 279 102 44 chr4 45063921 45064392 -139224270 + MLT1H LTR MaLR 1 547 -2 1345 218 128 0 chr4 45064521 45064833 -139223829 - L1MDa LINE L1 -6179 361 10 344 354 84 14 chr4 45065674 45065889 -139222773 + LTR33A LTR ERVL 132 361 -162 272 291 35 12 chr4 45065959 45066045 -139222617 - MIR SINE MIR -167 95 8 357 155 119 12 chr4 45069161 45069245 -139219417 + MER5B DNA MER1_type 86 178 0 512 224 145 0 chr4 45069257 45069409 -139219253 - MER5B DNA MER1_type -4 174 1 662 192 0 0 chr4 45069615 45069745 -139218917 + L1ME1 LINE L1 6025 6154 -12 360 0 0 0 chr4 45069811 45069851 -139218811 + (TCTA)n Simple_repeat Simple_repeat 2 41 0 273 328 101 8 chr4 45070099 45070218 -139218444 + LTR33 LTR ERVL 28 157 -364 205 250 0 0 chr4 45070301 45070341 -139218321 + polypyrimidine Low_complexity Low_complexity 6 45 0 2326 121 28 25 chr4 45070385 45070748 -139217914 + THE1B LTR MaLR 1 364 0 520 274 54 32 chr4 45071002 45071188 -139217474 + MIR SINE MIR 32 221 -41 251 341 57 34 chr4 45071868 45071956 -139216706 - L2 LINE L2 -28 3244 3155 198 159 43 0 chr4 45072417 45072486 -139216176 + (TA)n Simple_repeat Simple_repeat 2 73 0 27 29 0 0 chr4 45072905 45072939 -139215723 + AT_rich Low_complexity Low_complexity 1 34 0 315 71 0 0 chr4 45073530 45073572 -139215090 + (CA)n Simple_repeat Simple_repeat 2 43 0 209 268 0 0 chr4 45074056 45074097 -139214565 + MIR SINE MIR 40 80 -182 296 0 0 102 chr4 45074098 45074147 -139214515 + (TCTCCC)n Simple_repeat Simple_repeat 3 46 0 9686 47 2 138 chr4 45074156 45075764 -139212898 + SVA Other Other 2 1393 0 425 274 155 18 chr4 45075765 45075933 -139212729 + MIR SINE MIR 72 262 0 259 287 32 83 chr4 45076034 45076191 -139212471 + MIR SINE MIR 58 206 -56 322 230 8 135 chr4 45076947 45077073 -139211589 - L2 LINE L2 -5 3267 3158 216 0 0 0 chr4 45077383 45077407 -139211255 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 215 79 26 0 chr4 45078824 45078862 -139209800 + (CA)n Simple_repeat Simple_repeat 1 39 0 3748 145 19 71 chr4 45078871 45079699 -139208963 + LTR1 LTR ERV1 1 785 0 183 80 0 0 chr4 45079880 45079905 -139208757 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 191 183 150 17 chr4 45080621 45080681 -139207981 + MIR SINE MIR 125 192 -70 348 127 0 0 chr4 45080911 45080966 -139207696 + (CA)n Simple_repeat Simple_repeat 2 56 0 186 267 13 53 chr4 45081376 45081451 -139207211 + MIR SINE MIR 110 181 -81 1274 223 134 43 chr4 45081476 45081939 -139206723 + MLT1D LTR MaLR 1 505 0 622 333 34 19 chr4 45082087 45082351 -139206311 - L3 LINE CR1 -90 1487 1220 244 253 25 38 chr4 45082380 45082459 -139206203 - L3 LINE CR1 -280 1297 1220 280 370 76 43 chr4 45082653 45083259 -139205403 + L2 LINE L2 2242 2867 -447 21 71 0 0 chr4 45083804 45083846 -139204816 + AT_rich Low_complexity Low_complexity 1 42 0 4441 78 20 23 chr4 45083960 45085094 -139203568 + MER11A LTR ERVK 1 1266 0 369 0 0 0 chr4 45085428 45085469 -139203193 + (CA)n Simple_repeat Simple_repeat 2 42 0 3210 98 16 11 chr4 45085595 45086046 -139202616 + MLT2A2 LTR ERVL 1 453 0 537 329 107 0 chr4 45086139 45086355 -139202307 - MIR SINE MIR -1 261 23 183 42 0 0 chr4 45086721 45086745 -139201917 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1459 89 0 98 chr4 45087410 45087634 -139201028 - AluSx SINE Alu -105 207 6 22 35 0 0 chr4 45087649 45087678 -139200984 + AT_rich Low_complexity Low_complexity 1 29 0 1888 185 107 36 chr4 45088468 45088917 -139199745 + MER45B DNA AcHobo 310 790 -250 838 317 17 35 chr4 45088926 45089330 -139199332 + L1M4 LINE L1 1 397 -6452 14234 225 16 22 chr4 45089946 45095388 -139193274 + L1PA16 LINE L1 2231 7604 0 912 191 23 70 chr4 45095395 45095652 -139193010 + MER45B DNA AcHobo 785 1029 -11 377 282 63 91 chr4 45095674 45095806 -139192856 + L1M4 LINE L1 3628 3762 -3086 1805 139 44 17 chr4 45095806 45096100 -139192562 + AluSq SINE Alu 1 302 -11 377 282 63 91 chr4 45096100 45096329 -139192333 + L1M4 LINE L1 3762 3979 -2869 336 269 97 22 chr4 45096369 45096503 -139192159 + L1M4 LINE L1 4041 4184 -2664 2099 172 68 32 chr4 45096843 45097286 -139191376 + LTR2B LTR ERV1 32 490 0 24 56 0 42 chr4 45097357 45097428 -139191234 + AT_rich Low_complexity Low_complexity 1 68 0 347 328 95 15 chr4 45097598 45097860 -139190802 + L1M4 LINE L1 5172 5454 -1394 293 324 20 0 chr4 45097947 45098095 -139190567 + L1M4 LINE L1 5582 5732 -1116 33 0 0 0 chr4 45098668 45098701 -139189961 + AT_rich Low_complexity Low_complexity 1 33 0 224 338 68 47 chr4 45098744 45098892 -139189770 + MIR3 SINE MIR 41 191 -17 308 318 88 35 chr4 45099299 45099469 -139189193 + MIR SINE MIR 11 189 -73 396 325 11 0 chr4 45099640 45099770 -139188892 + MIR SINE MIR 38 171 -37 194 213 43 0 chr4 45099774 45099821 -139188841 + L2 LINE L2 3264 3312 -1 211 258 269 47 chr4 45099866 45100122 -139188540 + L2 LINE L2 3001 3313 0 401 97 14 0 chr4 45102075 45102147 -139186515 + (CA)n Simple_repeat Simple_repeat 2 74 0 210 71 0 0 chr4 45102149 45102177 -139186485 + (ATTG)n Simple_repeat Simple_repeat 3 30 0 192 361 0 0 chr4 45102212 45102273 -139186389 - MIR SINE MIR -7 255 195 25 65 0 0 chr4 45103697 45103743 -139184919 + AT_rich Low_complexity Low_complexity 1 46 0 661 292 58 12 chr4 45104033 45104276 -139184386 - L1ME3A LINE L1 -287 5883 5630 26 74 0 0 chr4 45104448 45104502 -139184160 + AT_rich Low_complexity Low_complexity 1 54 0 1758 205 99 14 chr4 45104579 45104961 -139183701 + L1MD2 LINE L1 5910 6331 -28 1109 251 17 0 chr4 45104961 45105196 -139183466 + MER8 DNA MER2_type 1 239 0 1758 205 99 14 chr4 45105196 45105228 -139183434 + L1MD2 LINE L1 6331 6359 0 409 280 5 20 chr4 45105229 45105429 -139183233 - L1M4 LINE L1 -3816 2330 2134 2117 78 7 3 chr4 45105508 45105821 -139182841 - AluY SINE Alu 0 314 1 26 0 0 0 chr4 45105839 45105865 -139182797 + AT_rich Low_complexity Low_complexity 1 26 0 250 293 0 49 chr4 45105970 45106052 -139182610 - MIR SINE MIR -115 93 16 1014 231 127 62 chr4 45106356 45106901 -139181761 + MER34C LTR ERV1 6 585 0 3760 148 18 65 chr4 45107165 45107890 -139180772 + LTR8 LTR ERV1 1 691 0 21 0 0 0 chr4 45107954 45107975 -139180687 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr4 45108581 45108610 -139180052 + AT_rich Low_complexity Low_complexity 1 29 0 1791 194 16 80 chr4 45110054 45110503 -139178159 + MLT2B3 LTR ERVL 1 420 -134 1640 223 41 37 chr4 45111147 45111609 -139177053 + MLT1C LTR MaLR 1 464 -3 22 0 0 0 chr4 45112712 45112734 -139175928 + AT_rich Low_complexity Low_complexity 1 22 0 676 182 72 33 chr4 45112974 45113155 -139175507 + LTR41 LTR ERVL 1 188 -585 318 50 0 0 chr4 45113194 45113234 -139175428 + (TG)n Simple_repeat Simple_repeat 2 41 0 1987 164 42 41 chr4 45113261 45113811 -139174851 - MLT2A2 LTR ERVL 0 554 1 196 311 234 12 chr4 45113823 45113990 -139174672 - L2 LINE L2 -102 3211 3008 1264 295 63 37 chr4 45113992 45114592 -139174070 - MLT2F LTR ERVL -10 653 38 377 325 176 65 chr4 45114642 45115246 -139173416 - L2 LINE L2 -339 2975 2305 862 215 57 0 chr4 45115665 45115842 -139172820 + MER58A DNA MER1_type 37 223 -1 863 258 96 75 chr4 45116509 45116893 -139171769 - MLT1J1 LTR MaLR 0 446 55 709 190 56 7 chr4 45117224 45117366 -139171296 + MER58A DNA MER1_type 37 185 -39 6646 74 3 3 chr4 45117560 45117679 -139170983 - L1PA8 LINE L1 -7 6165 6047 2411 61 0 26 chr4 45117679 45117991 -139170671 - AluY SINE Alu -7 304 1 6646 74 3 3 chr4 45117991 45119299 -139169363 - L1PA8 LINE L1 -124 6048 4760 841 298 178 35 chr4 45119589 45119976 -139168686 + L2 LINE L2 2438 2768 -545 2103 152 35 3 chr4 45119976 45120352 -139168310 - MLT1B LTR MaLR -2 388 1 841 298 178 35 chr4 45120352 45120719 -139167943 + L2 LINE L2 2768 3309 -4 474 326 29 6 chr4 45120843 45121018 -139167644 + MIR SINE MIR 39 217 -45 1403 240 101 36 chr4 45121030 45121564 -139167098 + MER50 LTR ERV1 10 578 -156 468 179 75 9 chr4 45121575 45121681 -139166981 + L1M4c LINE L1 830 942 -5442 1571 48 35 35 chr4 45121691 45121920 -139166742 - L1PA7 LINE L1 0 6154 5926 1098 79 0 0 chr4 45121920 45122060 -139166602 + MER50 LTR ERV1 593 732 -2 240 184 0 0 chr4 45123646 45123695 -139164967 + CT-rich Low_complexity Low_complexity 2 50 0 192 324 0 98 chr4 45123870 45123972 -139164690 - MER5A DNA MER1_type -3 186 95 32 26 0 0 chr4 45124660 45124699 -139163963 + AT_rich Low_complexity Low_complexity 1 39 0 337 274 34 96 chr4 45124699 45124907 -139163755 + HAL1 LINE L1 2309 2503 -4 21 71 0 0 chr4 45124927 45124969 -139163693 + AT_rich Low_complexity Low_complexity 1 42 0 339 307 52 39 chr4 45125785 45125938 -139162724 + MIR SINE MIR 75 229 -33 * 557 207 20 53 chr4 45125890 45126040 -139162622 - MIR SINE MIR 0 262 118 185 418 13 0 chr4 45126043 45126122 -139162540 - L2 LINE L2 -57 3215 3136 279 264 141 0 chr4 45126553 45126674 -139161988 - L2 LINE L2 -5 3308 3171 273 57 0 0 chr4 45126959 45126994 -139161668 + (ATG)n Simple_repeat Simple_repeat 2 36 0 231 348 0 59 chr4 45127073 45127195 -139161467 - MIR SINE MIR -40 168 53 289 264 0 0 chr4 45127238 45127325 -139161337 + (TA)n Simple_repeat Simple_repeat 1 87 0 459 0 0 0 chr4 45127389 45127440 -139161222 + (TA)n Simple_repeat Simple_repeat 1 51 0 243 61 0 0 chr4 45127442 45127475 -139161187 + (GA)n Simple_repeat Simple_repeat 2 34 0 2004 134 50 31 chr4 45127746 45128103 -139160559 + THE1B LTR MaLR 1 364 0 484 340 119 32 chr4 45129082 45129520 -139159142 + L2 LINE L2 2838 3313 0 23 33 0 0 chr4 45129924 45129954 -139158708 + AT_rich Low_complexity Low_complexity 1 30 0 784 267 69 4 chr4 45130299 45130531 -139158131 + MIR SINE MIR 16 262 0 270 316 88 35 chr4 45131153 45131324 -139157338 - L3 LINE CR1 -1114 463 284 591 185 0 25 chr4 45131499 45131644 -139157018 - FLAM_A SINE Alu 0 142 1 446 277 108 14 chr4 45132421 45132569 -139156093 - MIR SINE MIR -69 193 32 23 54 0 0 chr4 45132904 45132941 -139155721 + AT_rich Low_complexity Low_complexity 1 37 0 583 253 12 42 chr4 45133131 45133297 -139155365 - MIR SINE MIR -6 256 96 2315 68 0 0 chr4 45133303 45133625 -139155037 + AluY SINE Alu 1 311 0 1274 132 24 5 chr4 45133630 45133835 -139154827 + MSTA LTR MaLR 1 209 -219 2125 123 0 0 chr4 45134348 45134633 -139154029 + AluSg SINE Alu 1 285 -25 246 62 0 0 chr4 45134633 45134665 -139153997 + (TA)n Simple_repeat Simple_repeat 2 33 0 405 272 115 14 chr4 45134915 45135202 -139153460 + L1ME4a LINE L1 5793 6108 -13 809 233 172 14 chr4 45136403 45136840 -139151822 + L1ME3 LINE L1 2382 2887 -3259 1237 250 181 39 chr4 45136873 45137257 -139151405 + L1ME3 LINE L1 5284 5612 -550 2248 72 0 36 chr4 45137257 45137563 -139151099 - AluY SINE Alu -16 295 1 1237 250 181 39 chr4 45137563 45137943 -139150719 + L1ME3 LINE L1 5612 6150 -12 12927 149 52 11 chr4 45137981 45139044 -139149618 - Tigger1 DNA MER2_type 0 2418 1400 2153 99 17 3 chr4 45139044 45139346 -139149316 + AluY SINE Alu 1 306 -5 12927 149 52 11 chr4 45139346 45140605 -139148057 - Tigger1 DNA MER2_type -1018 1400 1 22 0 0 0 chr4 45140639 45140661 -139148001 + AT_rich Low_complexity Low_complexity 1 22 0 2197 116 0 0 chr4 45140809 45141111 -139147551 - AluSc SINE Alu -7 302 1 216 0 0 0 chr4 45141126 45141150 -139147512 + (TTAA)n Simple_repeat Simple_repeat 1 24 0 1515 206 3 3 chr4 45141151 45141437 -139147225 - AluJo SINE Alu -24 288 3 16822 34 1 0 chr4 45141987 45144783 -139143879 - L1PA3 LINE L1 -2 6153 3357 1973 151 10 0 chr4 45144802 45145101 -139143561 + AluJo SINE Alu 1 302 -10 353 156 0 31 chr4 45146044 45146108 -139142554 + L1ME1 LINE L1 6033 6094 -72 584 223 0 23 chr4 45146110 45146240 -139142422 + FLAM_A SINE Alu 1 127 -6 24 32 0 0 chr4 45146517 45146548 -139142114 + AT_rich Low_complexity Low_complexity 1 31 0 293 314 129 36 chr4 45146632 45147474 -139141188 + L1M4 LINE L1 2255 3175 -2971 186 313 141 0 chr4 45147895 45147959 -139140703 + MER5A DNA MER1_type 9 81 -108 304 369 166 29 chr4 45148153 45148497 -139140165 + L3 LINE CR1 1111 1501 -76 1555 210 3 13 chr4 45150307 45150607 -139138055 - AluJb SINE Alu -15 297 1 235 328 0 0 chr4 45154706 45154770 -139133892 - L2 LINE L2 -6 3307 3244 243 326 160 28 chr4 45154847 45155080 -139133582 - L2 LINE L2 -237 3035 2778 286 292 45 88 chr4 45155131 45155439 -139133223 - L2 LINE L2 -785 2529 2235 430 263 59 28 chr4 45155644 45155883 -139132779 - L1MC4a LINE L1 -116 6005 5769 22 56 0 0 chr4 45155883 45155919 -139132743 + AT_rich Low_complexity Low_complexity 1 36 0 624 248 50 77 chr4 45156642 45156981 -139131681 - L1MEd LINE L1 -860 1630 1274 315 291 66 48 chr4 45157084 45157311 -139131351 - L1MEd LINE L1 -4973 1146 916 215 226 12 36 chr4 45157391 45157475 -139131187 + T-rich Low_complexity Low_complexity 2 83 0 1779 110 0 90 chr4 45157722 45158032 -139130630 + AluY SINE Alu 1 282 -29 25 0 0 0 chr4 45158046 45158071 -139130591 + AT_rich Low_complexity Low_complexity 1 25 0 243 88 0 0 chr4 45158724 45158758 -139129904 + (A)n Simple_repeat Simple_repeat 1 34 0 2196 138 48 3 chr4 45159240 45159611 -139129051 - MLT1B LTR MaLR 0 390 3 311 273 0 56 chr4 45161661 45161804 -139126858 + CT-rich Low_complexity Low_complexity 4 138 0 204 158 0 0 chr4 45162389 45162427 -139126235 + GA-rich Low_complexity Low_complexity 3 40 0 727 140 26 0 chr4 45163854 45163968 -139124694 + FLAM_C SINE Alu 1 117 -16 26 50 0 0 chr4 45164093 45164133 -139124529 + AT_rich Low_complexity Low_complexity 1 40 0 407 263 133 40 chr4 45166273 45166573 -139122089 + L1ME4a LINE L1 5629 5956 -165 243 0 0 0 chr4 45168679 45168706 -139119956 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 2077 142 39 25 chr4 45168779 45169138 -139119524 - THE1B LTR MaLR 0 364 1 317 294 94 84 chr4 45171696 45171982 -139116680 + L2 LINE L2 2573 2861 -453 2782 259 64 17 chr4 45174943 45175714 -139112948 + L1M4 LINE L1 51 857 -5685 * 3860 166 54 57 chr4 45175694 45176654 -139112008 + L1MB7 LINE L1 5219 6167 -17 200 243 0 27 chr4 45177282 45177356 -139111306 + (TTTA)n Simple_repeat Simple_repeat 1 72 0 992 243 84 36 chr4 45178802 45179589 -139109073 - L1MC5 LINE L1 -60 7901 7154 2448 136 5 14 chr4 45179785 45180227 -139108435 + SVA Other Other 1 438 -948 558 206 97 85 chr4 45180338 45180396 -139108266 + MER58B DNA MER1_type 175 231 -2189 2839 13 0 0 chr4 45180396 45180710 -139107952 - AluYb8 SINE Alu -4 314 1 558 206 97 85 chr4 45180710 45180793 -139107869 + MER58B DNA MER1_type 231 321 -2099 1059 79 0 0 chr4 45180793 45180932 -139107730 - MER85 DNA T2_type 0 139 1 558 206 97 85 chr4 45180932 45180954 -139107708 + MER58B DNA MER1_type 321 341 0 825 236 23 0 chr4 45181402 45181576 -139107086 - AluJo SINE Alu -8 304 127 241 342 145 49 chr4 45181636 45182725 -139105937 - L2 LINE L2 -1284 2030 837 2174 110 7 3 chr4 45183061 45183371 -139105291 + AluSx SINE Alu 1 311 -1 185 0 40 0 chr4 45184353 45184378 -139104284 + (TA)n Simple_repeat Simple_repeat 1 26 0 197 395 44 9 chr4 45184924 45185038 -139103624 - L2 LINE L2 -8 3264 3147 368 41 20 0 chr4 45186583 45186632 -139102030 + MADE1 DNA Mariner 7 56 -24 191 189 19 0 chr4 45187575 45187628 -139101034 + CT-rich Low_complexity Low_complexity 4 57 0 527 305 117 9 chr4 45188268 45188293 -139100369 + MIR SINE MIR 14 35 -227 2646 252 39 23 chr4 45188293 45189171 -139099491 + MER97a DNA MER1_type 2 893 -1 527 305 117 9 chr4 45189171 45189368 -139099294 + MIR SINE MIR 35 260 -2 243 0 0 0 chr4 45189767 45189794 -139098868 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 185 0 40 0 chr4 45189878 45189903 -139098759 + (TTAA)n Simple_repeat Simple_repeat 2 27 0 346 324 153 19 chr4 45189913 45190129 -139098533 - MIR SINE MIR -15 247 3 271 358 82 15 chr4 45191229 45191363 -139097299 + MIR SINE MIR 12 154 -108 893 235 132 58 chr4 45191386 45191916 -139096746 - MLT1E3 LTR MaLR -11 613 3 182 323 0 71 chr4 45191918 45192017 -139096645 + MIR SINE MIR 168 259 -3 297 300 67 47 chr4 45193300 45193450 -139095212 - MIR3 SINE MIR -3 205 53 182 301 146 0 chr4 45194282 45194385 -139094277 + L2 LINE L2 3196 3313 0 6025 151 19 6 chr4 45194529 45196259 -139092403 - L1MA4 LINE L1 0 6300 4548 2091 117 0 0 chr4 45196278 45196561 -139092101 + AluSq SINE Alu 1 283 -30 27 0 0 0 chr4 45196576 45196603 -139092059 + AT_rich Low_complexity Low_complexity 1 27 0 346 65 0 0 chr4 45196727 45196773 -139091889 + MADE1 DNA Mariner 35 80 0 1206 8 0 0 chr4 45196976 45197149 -139091513 + L1PA2 LINE L1 6009 6181 0 195 390 81 17 chr4 45197911 45198083 -139090579 + MIR SINE MIR 18 200 -62 701 311 61 40 chr4 45198243 45198539 -139090123 + MER115 DNA AcHobo 332 633 -60 1158 82 29 0 chr4 45198541 45198711 -139089951 + L1MA1 LINE L1 6127 6301 -1 24 53 0 0 chr4 45200671 45200709 -139087953 + AT_rich Low_complexity Low_complexity 1 38 0 410 277 32 45 chr4 45200761 45200916 -139087746 + MIR SINE MIR 48 200 -62 235 298 0 0 chr4 45200916 45200973 -139087689 - MIR SINE MIR -3 259 203 278 273 68 38 chr4 45201936 45202096 -139086566 + MIR3 SINE MIR 9 176 -64 21 36 0 0 chr4 45202899 45202927 -139085735 + AT_rich Low_complexity Low_complexity 1 28 0 284 304 165 25 chr4 45203687 45203845 -139084817 + MIR SINE MIR 66 245 -17 21 36 0 0 chr4 45204707 45204735 -139083927 + AT_rich Low_complexity Low_complexity 1 28 0 325 253 16 54 chr4 45204740 45204926 -139083736 + (TA)n Simple_repeat Simple_repeat 1 179 0 470 154 26 13 chr4 45205952 45206030 -139082632 - MER20 DNA MER1_type -138 81 3 294 357 70 0 chr4 45207249 45207378 -139081284 - L2 LINE L2 -6 3307 3170 28 29 0 0 chr4 45208364 45208399 -139080263 + AT_rich Low_complexity Low_complexity 1 35 0 503 106 11 11 chr4 45208446 45208540 -139080122 + L1PA15 LINE L1 6068 6161 -4 23 0 0 0 chr4 45208621 45208644 -139080018 + AT_rich Low_complexity Low_complexity 1 23 0 23 42 0 21 chr4 45208923 45208935 -139079727 + AT_rich Low_complexity Low_complexity 1 12 -35 2815 13 0 0 chr4 45208935 45209246 -139079416 + AluYa5 SINE Alu 1 311 0 23 42 0 21 chr4 45209246 45209281 -139079381 + AT_rich Low_complexity Low_complexity 12 47 0 189 0 0 0 chr4 45260306 45260327 -139028335 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 3111 162 67 28 chr4 45260849 45261552 -139027110 + L1MB5 LINE L1 5423 6152 -22 434 306 28 46 chr4 45264688 45264904 -139023758 - MIR SINE MIR -50 212 1 1302 232 155 3 chr4 45265713 45266023 -139022639 + LTR18A LTR ERVL 1 357 0 7375 171 7 5 chr4 45266030 45267495 -139021167 + HERVL18 LTR ERVL 2 1538 -4509 1529 147 0 0 chr4 45267470 45267694 -139020968 + HERVL18 LTR ERVL 5685 5908 -139 * 1318 223 132 12 chr4 45267714 45268033 -139020629 + LTR18A LTR ERVL 1 357 0 249 298 210 0 chr4 45268036 45268160 -139020502 + MIR SINE MIR 5 154 -108 2527 216 40 60 chr4 45268240 45268906 -139019756 + MER82 DNA MER2_type 1 653 0 481 275 85 37 chr4 45268951 45269140 -139019522 + MIR SINE MIR 63 260 -2 1307 236 0 14 chr4 45269783 45270067 -139018595 - AluJo SINE Alu -30 282 3 27 0 0 0 chr4 45270264 45270291 -139018371 + AT_rich Low_complexity Low_complexity 1 27 0 2031 148 0 10 chr4 45271418 45271715 -139016947 + AluJb SINE Alu 1 294 -18 836 164 23 35 chr4 45272914 45273085 -139015577 + Tigger4(Zombi) DNA MER2_type 2563 2731 0 911 223 67 70 chr4 45273464 45273809 -139014853 + L1M4 LINE L1 10 353 -6189 1997 104 75 0 chr4 45273812 45274091 -139014571 + AluSx SINE Alu 5 304 -8 1425 185 73 7 chr4 45274233 45274519 -139014143 + AluSx SINE Alu 5 309 -3 183 80 0 0 chr4 45274528 45274553 -139014109 + (A)n Simple_repeat Simple_repeat 1 25 0 4547 227 54 40 chr4 45274553 45275268 -139013394 + L1M4 LINE L1 343 1046 -5600 1049 253 122 6 chr4 45275268 45275588 -139013074 + LTR18A LTR ERVL 1 357 0 4547 227 54 40 chr4 45275588 45275663 -139012999 + L1M4 LINE L1 1046 1118 -5528 3067 116 13 2 chr4 45275663 45276111 -139012551 - MLT2A2 LTR ERVL 0 453 1 4547 227 54 40 chr4 45276111 45276809 -139011853 + L1M4 LINE L1 1118 1877 -4769 39222 77 10 8 chr4 45276826 45282945 -139005717 - L1PA5 LINE L1 -8 6146 11 1836 239 61 52 chr4 45282954 45283736 -139004926 + L1M4 LINE L1 2041 2785 -3859 2187 93 13 17 chr4 45283736 45284038 -139004624 + AluY SINE Alu 1 301 -10 1836 239 61 52 chr4 45284038 45284465 -139004197 + L1M4 LINE L1 2785 3207 -3437 1410 173 188 10 chr4 45284527 45284754 -139003908 + L1MB7 LINE L1 5700 5885 -299 1944 150 10 0 chr4 45284754 45285048 -139003614 + AluSp SINE Alu 1 297 -16 1410 173 188 10 chr4 45285048 45285213 -139003449 + L1MB7 LINE L1 5885 6162 -22 180 0 0 0 chr4 45285676 45285696 -139002966 + (T)n Simple_repeat Simple_repeat 1 20 0 3763 0 0 0 chr4 45285711 45286129 -139002533 - L1HS LINE L1 0 6155 5738 757 225 51 8 chr4 45286384 45286620 -139002042 - L1MEc LINE L1 -5486 910 665 1244 305 85 13 chr4 45286666 45287194 -139001468 - L1MEc LINE L1 -5811 585 20 2690 26 3 0 chr4 45287724 45288033 -139000629 + AluY SINE Alu 1 310 -1 244 314 57 48 chr4 45288228 45288352 -139000310 + L2 LINE L2 3177 3301 -12 188 343 20 39 chr4 45288496 45288598 -139000064 + L2 LINE L2 3192 3291 -22 1326 302 63 73 chr4 45289263 45290204 -138998458 - L2 LINE L2 0 3313 2383 1088 267 233 10 chr4 45290723 45291196 -138997466 - MLT1G1 LTR MaLR 0 578 3 241 356 0 0 chr4 45291199 45291272 -138997390 + L2 LINE L2 3194 3266 -6 412 138 24 16 chr4 45291791 45291914 -138996748 + (TA)n Simple_repeat Simple_repeat 2 125 0 21 0 0 0 chr4 45292515 45292536 -138996126 + AT_rich Low_complexity Low_complexity 1 21 0 216 311 66 0 chr4 45292575 45292636 -138996026 + L2 LINE L2 3215 3279 -34 272 277 108 15 chr4 45293846 45293976 -138994686 + L2 LINE L2 2803 2944 -370 365 175 0 0 chr4 45294027 45294090 -138994572 + MLT2B3 LTR ERVL 3 65 -489 2285 205 19 40 chr4 45294190 45294632 -138994030 + MLT2B3 LTR ERVL 82 515 -39 216 111 0 0 chr4 45294632 45294668 -138993994 + (TCTA)n Simple_repeat Simple_repeat 2 37 0 2285 205 19 40 chr4 45294668 45294704 -138993958 + MLT2B3 LTR ERVL 515 550 -4 3208 128 49 6 chr4 45295569 45296099 -138992563 - MER41C LTR ERV1 -1 553 1 27 0 0 0 chr4 45297473 45297500 -138991162 + AT_rich Low_complexity Low_complexity 1 27 0 24 0 0 0 chr4 45297984 45298008 -138990654 + AT_rich Low_complexity Low_complexity 1 24 0 2118 89 0 4 chr4 45298624 45299018 -138989644 - AluSg SINE Alu 0 393 1 253 298 111 6 chr4 45299200 45299371 -138989291 + MIR SINE MIR 48 236 -26 735 353 107 22 chr4 45299603 45299725 -138988937 - L2 LINE L2 -1381 1933 1823 2451 119 19 5 chr4 45299725 45300095 -138988567 - THE1C LTR MaLR 0 375 1 735 353 107 22 chr4 45300095 45300731 -138987931 - L2 LINE L2 -1491 1823 1111 180 188 62 21 chr4 45300949 45300997 -138987665 - MIR SINE MIR -113 149 100 231 285 104 35 chr4 45301433 45301577 -138987085 - MER102b DNA MER1_type -9 332 179 180 0 0 0 chr4 45301971 45301991 -138986671 + (A)n Simple_repeat Simple_repeat 1 20 0 1111 230 97 27 chr4 45303149 45303573 -138985089 + MLT1D LTR MaLR 1 467 0 1333 254 75 32 chr4 45303697 45304166 -138984496 - LTR16C LTR ERVL -2 489 1 266 191 0 0 chr4 45304321 45304368 -138984294 - L1M2 LINE L1 -635 7075 7029 * 293 163 0 0 chr4 45304359 45304408 -138984254 + L1 LINE L1 4752 4800 -1346 13988 190 26 19 chr4 45304413 45305165 -138983497 - L1M2 LINE L1 -684 7026 6280 631 191 64 0 chr4 45305165 45305275 -138983387 + FLAM_A SINE Alu 2 118 -15 13988 190 26 19 chr4 45305275 45308061 -138980601 - L1M2 LINE L1 -1430 6280 3463 293 115 0 19 chr4 45308530 45308582 -138980080 + (TTTC)n Simple_repeat Simple_repeat 2 52 0 194 308 132 0 chr4 45308825 45308916 -138979746 + L2 LINE L2 3008 3110 -203 1009 244 47 6 chr4 45308971 45309431 -138979231 + MLT1F1 LTR MaLR 13 558 -9 546 235 118 0 chr4 45309488 45309624 -138979038 + MER3 DNA MER1_type 47 198 -11 422 208 20 101 chr4 45309652 45309801 -138978861 + L2 LINE L2 3164 3300 -13 1603 214 46 20 chr4 45309809 45310160 -138978502 - MLT1A2 LTR MaLR -11 363 4 3476 94 31 10 chr4 45310170 45310690 -138977972 - L1PA15 LINE L1 -8 6157 5627 354 296 10 10 chr4 45310693 45310791 -138977871 - L1M2 LINE L1 -5096 2400 2303 * 473 92 0 0 chr4 45310788 45310853 -138977809 - L1P4 LINE L1 -543 5622 5558 6447 141 53 25 chr4 45311064 45311984 -138976678 - Tigger3b DNA MER2_type -1797 1231 268 2436 161 101 19 chr4 45311984 45312500 -138976162 - LTR64 LTR ERVK 0 558 1 6447 141 53 25 chr4 45312500 45312760 -138975902 - Tigger3b DNA MER2_type -2760 268 17 207 0 0 0 chr4 45312858 45312881 -138975781 + (A)n Simple_repeat Simple_repeat 1 23 0 665 256 101 22 chr4 45313444 45313671 -138974991 - MIR SINE MIR -10 252 8 1301 223 32 7 chr4 45314110 45314420 -138974242 - MER82 DNA MER2_type -193 460 143 816 246 109 8 chr4 45314433 45314681 -138973981 + L1ME1 LINE L1 3589 3861 -2285 1523 265 116 41 chr4 45314690 45315122 -138973540 + MLT2F LTR ERVL 10 495 -168 1531 202 0 6 chr4 45315122 45315434 -138973228 - AluSg SINE Alu 0 310 1 1523 265 116 41 chr4 45315434 45315560 -138973102 + MLT2F LTR ERVL 495 610 -53 1274 271 48 56 chr4 45315801 45316108 -138972554 + MLT2F LTR ERVL 185 488 -175 2210 123 0 0 chr4 45316108 45316418 -138972244 - AluSg SINE Alu 0 310 1 1274 271 48 56 chr4 45316418 45316593 -138972069 + MLT2F LTR ERVL 488 663 0 3532 232 57 29 chr4 45316614 45317939 -138970723 + L1ME1 LINE L1 3873 5272 -874 282 120 40 0 chr4 45317941 45318016 -138970646 + (TA)n Simple_repeat Simple_repeat 2 79 0 2337 240 56 13 chr4 45318183 45318862 -138969800 + L1ME1 LINE L1 5454 6161 -5 275 346 39 0 chr4 45318900 45319004 -138969658 - MIR SINE MIR 0 262 155 668 133 9 18 chr4 45319014 45319127 -138969535 - AluSq SINE Alu -90 223 112 362 329 41 7 chr4 45319134 45319280 -138969382 - MIR SINE MIR -110 152 2 219 209 23 12 chr4 45320001 45320087 -138968575 + (TA)n Simple_repeat Simple_repeat 1 87 0 529 327 12 0 chr4 45320189 45320354 -138968308 + MIR SINE MIR 61 227 -35 21 36 0 0 chr4 45320838 45320866 -138967796 + AT_rich Low_complexity Low_complexity 1 28 0 376 273 39 19 chr4 45321136 45321293 -138967369 - MIR SINE MIR -67 141 30 1164 234 62 31 chr4 45321694 45322048 -138966614 - MLT1A1 LTR MaLR 0 365 1 451 257 176 0 chr4 45322048 45322196 -138966466 - MIR SINE MIR -25 237 64 261 0 0 0 chr4 45322469 45322498 -138966164 + (CA)n Simple_repeat Simple_repeat 2 30 0 899 272 32 24 chr4 45322852 45323098 -138965564 - MIR SINE MIR -2 260 13 925 228 47 24 chr4 45323606 45323861 -138964801 - MIR SINE MIR -1 261 1 348 247 47 0 chr4 45323912 45323997 -138964665 - L2 LINE L2 0 3272 3184 1026 239 95 88 chr4 45324284 45324781 -138963881 - LTR33 LTR ERVL -6 515 16 225 240 33 7 chr4 45326086 45326236 -138962426 + (TA)n Simple_repeat Simple_repeat 2 155 0 283 191 191 21 chr4 45326593 45326687 -138961975 - MIR SINE MIR -4 258 149 203 268 89 106 chr4 45326731 45326854 -138961808 + MIR SINE MIR 84 204 -58 465 19 0 0 chr4 45326873 45326927 -138961735 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 22 0 0 0 chr4 45327549 45327571 -138961091 + AT_rich Low_complexity Low_complexity 1 22 0 1239 202 46 83 chr4 45328063 45328159 -138960503 + MER58B DNA MER1_type 4 102 -2318 2110 119 6 16 chr4 45328159 45328470 -138960192 - AluSc SINE Alu -1 308 1 1239 202 46 83 chr4 45328470 45328724 -138959938 + MER58B DNA MER1_type 102 341 0 2451 54 0 0 chr4 45329097 45329392 -138959270 + AluY SINE Alu 1 295 -16 1505 195 82 39 chr4 45330803 45331167 -138957495 - MLT1B LTR MaLR 0 390 11 22 0 0 0 chr4 45331207 45331229 -138957433 + AT_rich Low_complexity Low_complexity 1 22 0 1948 187 14 17 chr4 45331424 45331782 -138956880 - MLT1A1 LTR MaLR 0 365 9 300 118 44 0 chr4 45331816 45331884 -138956778 + (TA)n Simple_repeat Simple_repeat 2 72 0 421 280 39 50 chr4 45332472 45332681 -138955981 - MIR SINE MIR -52 210 6 217 317 87 48 chr4 45333520 45333624 -138955038 - L2 LINE L2 -56 3216 3109 446 199 54 102 chr4 45333945 45334131 -138954531 + MIR SINE MIR 64 240 -22 21 36 0 0 chr4 45334140 45334168 -138954494 + AT_rich Low_complexity Low_complexity 1 28 0 258 310 16 62 chr4 45334245 45334374 -138954288 - L2 LINE L2 -1 3312 3190 1162 380 31 53 chr4 45334437 45334855 -138953807 + MLT2D LTR ERVL 1 409 -5 585 345 19 19 chr4 45335694 45335952 -138952710 - MIR SINE MIR -2 260 3 310 235 0 0 chr4 45336159 45336227 -138952435 + L1MC4 LINE L1 6636 6703 -1339 262 243 0 43 chr4 45336419 45336489 -138952173 - L2 LINE L2 -5 3267 3201 765 241 37 5 chr4 45338246 45338437 -138950225 + LTR33 LTR ERVL 21 217 -304 306 297 169 62 chr4 45338840 45339194 -138949468 - L2 LINE L2 -727 2587 2196 318 331 39 39 chr4 45339226 45339404 -138949258 - MER5A DNA MER1_type -5 184 7 2241 176 32 17 chr4 45339461 45339926 -138948736 + L1M3 LINE L1 5256 5727 -456 26 0 0 0 chr4 45339975 45340001 -138948661 + AT_rich Low_complexity Low_complexity 1 26 0 244 294 53 47 chr4 45340153 45340513 -138948149 + L1M4 LINE L1 2205 2566 -3580 1121 182 15 0 chr4 45340618 45340816 -138947846 - AluJb SINE Alu -20 292 92 27 49 0 0 chr4 45341004 45341045 -138947617 + AT_rich Low_complexity Low_complexity 1 41 0 363 324 148 55 chr4 45341448 45341814 -138946848 + L2 LINE L2 1473 1914 -1400 1457 162 4 4 chr4 45341814 45342073 -138946589 - L1MA4A LINE L1 -5 6298 6040 363 324 148 55 chr4 45342073 45342286 -138946376 + L2 LINE L2 1914 2106 -1208 22 35 0 0 chr4 45342509 45342538 -138946124 + AT_rich Low_complexity Low_complexity 1 29 0 8591 155 24 4 chr4 45343573 45345797 -138942865 + L1PA15 LINE L1 3718 5985 -178 1442 173 124 59 chr4 45345797 45345972 -138942690 + MSTA LTR MaLR 1 163 -265 4778 58 2 8 chr4 45345972 45346617 -138942045 + L1PA7 LINE L1 5535 6175 0 1442 173 124 59 chr4 45346617 45346828 -138941834 + MSTA LTR MaLR 163 413 -15 1021 143 10 25 chr4 45346829 45347025 -138941637 + L1PA15 LINE L1 5971 6163 -2 202 250 19 0 chr4 45347626 45347678 -138940984 + L2 LINE L2 2394 2446 -868 474 387 54 5 chr4 45348061 45348247 -138940415 + MER91A DNA MER1_type 2 196 0 252 306 120 35 chr4 45348470 45348845 -138939817 + MLT1L LTR MaLR 124 611 -3 446 306 77 33 chr4 45350018 45350355 -138938307 + L1M4 LINE L1 2683 3034 -3112 405 0 0 0 chr4 45350685 45350730 -138937932 + (TG)n Simple_repeat Simple_repeat 1 45 0 25 0 0 0 chr4 45350781 45350806 -138937856 + AT_rich Low_complexity Low_complexity 1 25 0 267 153 0 51 chr4 45350806 45350865 -138937797 - L1MA4 LINE L1 -14 6286 6231 5635 157 20 5 chr4 45350868 45352090 -138936572 - L1MA4 LINE L1 -36 6264 5027 22 0 0 0 chr4 45352399 45352421 -138936241 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr4 45353417 45353460 -138935202 + AT_rich Low_complexity Low_complexity 1 43 0 249 229 17 34 chr4 45353467 45353585 -138935077 + (TA)n Simple_repeat Simple_repeat 1 116 0 2503 47 0 0 chr4 45353779 45354078 -138934584 - AluY SINE Alu -12 299 1 383 293 134 66 chr4 45354251 45354369 -138934293 + MLT1G1 LTR MaLR 79 188 -407 552 286 91 63 chr4 45354369 45354894 -138933768 - MER34 LTR ERV1 -2 540 1 383 293 134 66 chr4 45354894 45355229 -138933433 + MLT1G1 LTR MaLR 188 563 -32 330 263 0 32 chr4 45355775 45355870 -138932792 - L2 LINE L2 0 3313 3222 2129 110 10 0 chr4 45356168 45356458 -138932204 - AluSg SINE Alu -14 296 4 21 0 0 0 chr4 45356911 45356932 -138931730 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr4 45357963 45357995 -138930667 + AT_rich Low_complexity Low_complexity 1 32 0 620 300 95 44 chr4 45360543 45360860 -138927802 - MLT1K LTR MaLR -18 570 238 270 303 33 33 chr4 45360916 45361038 -138927624 - L2 LINE L2 -1073 2241 2120 23 68 0 0 chr4 45361699 45361743 -138926919 + AT_rich Low_complexity Low_complexity 1 44 0 277 365 14 20 chr4 45362407 45362555 -138926107 + L1PB4 LINE L1 122 268 -5936 7402 255 42 45 chr4 45362829 45365237 -138923425 + L1PB4 LINE L1 395 2814 -3389 2188 84 3 42 chr4 45365237 45365545 -138923117 + AluSq SINE Alu 1 296 -17 7402 255 42 45 chr4 45365545 45367172 -138921490 + L1PB4 LINE L1 2814 4444 -1759 5037 148 20 10 chr4 45367172 45368429 -138920233 + L1PB4 LINE L1 4939 6211 -2 1635 204 23 0 chr4 45368887 45369191 -138919471 + AluJo SINE Alu 1 311 -1 191 222 120 83 chr4 45369226 45369334 -138919328 + MER5A DNA MER1_type 56 167 -22 * 321 289 0 31 chr4 45369269 45369366 -138919296 - MER5A DNA MER1_type -94 95 2 589 310 75 19 chr4 45369982 45370250 -138918412 - L2 LINE L2 -1 3312 3030 263 266 238 7 chr4 45370334 45370477 -138918185 - MLT1L LTR MaLR -122 493 318 2047 128 0 3 chr4 45371811 45372100 -138916562 + AluSx SINE Alu 1 288 -24 32 0 0 0 chr4 45372268 45372300 -138916362 + AT_rich Low_complexity Low_complexity 1 32 0 279 161 0 0 chr4 45372370 45372426 -138916236 + (TATATG)n Simple_repeat Simple_repeat 3 58 0 244 300 0 0 chr4 45372499 45372589 -138916073 - L1MC4 LINE L1 -1339 6703 6614 35508 80 10 3 chr4 45372641 45377451 -138911211 + L1PA5 LINE L1 11 4851 -1295 7196 56 2 1 chr4 45377551 45378532 -138910130 + L1PA5 LINE L1 5174 6154 0 224 219 0 0 chr4 45378719 45378760 -138909902 + (TATG)n Simple_repeat Simple_repeat 2 42 0 228 214 0 0 chr4 45378825 45378881 -138909781 + (CATATA)n Simple_repeat Simple_repeat 3 58 0 756 262 172 25 chr4 45379815 45380258 -138908404 - L1MC4 LINE L1 0 8042 7535 12326 52 2 1 chr4 45381018 45383351 -138905311 - L1PA5 LINE L1 0 6154 3822 2292 46 0 0 chr4 45383351 45383636 -138905026 + L1P LINE L1 3504 3788 -2358 675 260 149 29 chr4 45383636 45383978 -138904684 - MLT1L LTR MaLR -115 500 118 1729 192 32 17 chr4 45383998 45384342 -138904320 - MLT1A1 LTR MaLR -16 349 1 2110 144 0 0 chr4 45384511 45384809 -138903853 - AluSx SINE Alu -14 298 1 494 254 21 42 chr4 45385138 45385280 -138903382 - MER63 DNA MER1_type -241 819 681 279 203 17 0 chr4 45385302 45385361 -138903301 + MER63 DNA MER1_type 2 687 -375 1757 202 32 3 chr4 45385381 45385728 -138902934 - MLT1A1 LTR MaLR -6 359 3 263 167 0 0 chr4 45385746 45385788 -138902874 - MER63 DNA MER1_type -887 43 2 294 291 94 8 chr4 45386369 45386496 -138902166 + L2 LINE L2 2872 3009 -263 1247 203 95 54 chr4 45386496 45386865 -138901797 - MLT1B LTR MaLR -6 384 1 341 351 45 57 chr4 45386877 45387142 -138901520 + L2 LINE L2 3036 3297 -16 209 274 16 0 chr4 45387230 45387292 -138901370 - MIR SINE MIR -29 233 171 313 283 190 5 chr4 45387359 45387543 -138901119 - L1ME LINE L1 -485 5636 5419 303 332 81 69 chr4 45388091 45388338 -138900324 + L2 LINE L2 3023 3272 0 372 42 0 0 chr4 45388419 45388467 -138900195 - MADE1 DNA Mariner 0 80 33 491 248 14 35 chr4 45388593 45388738 -138899924 - MER76 LTR ERV -153 535 394 2874 196 32 56 chr4 45388745 45389438 -138899224 + LTR8 LTR ERV1 16 691 0 697 234 71 53 chr4 45389480 45389762 -138898900 - MER76 LTR ERV -401 287 1 314 233 67 73 chr4 45390826 45390976 -138897686 + L1ME4a LINE L1 5955 6103 -18 260 357 90 62 chr4 45390979 45391402 -138897260 - L2 LINE L2 -2054 1260 826 456 312 50 15 chr4 45392331 45392530 -138896132 - MLT1H LTR MaLR -236 313 108 929 189 0 56 chr4 45392794 45392908 -138895754 + MLT1B LTR MaLR 1 120 -270 1983 141 7 3 chr4 45392908 45393207 -138895455 + AluSx SINE Alu 12 311 -1 929 189 0 56 chr4 45393207 45393423 -138895239 + MLT1B LTR MaLR 120 388 -2 268 286 0 11 chr4 45395400 45395491 -138893171 - LTR67 LTR ERVL -11 546 457 397 350 40 20 chr4 45396113 45396313 -138892349 - MIR SINE MIR -12 250 47 192 158 0 0 chr4 45396326 45396364 -138892298 + CT-rich Low_complexity Low_complexity 2 39 0 23 0 0 0 chr4 45396526 45396549 -138892113 + AT_rich Low_complexity Low_complexity 1 23 0 856 261 100 9 chr4 45397400 45397630 -138891032 + MIR SINE MIR 1 251 -11 255 254 97 22 chr4 45397654 45397788 -138890874 - L1ME LINE L1 -263 5858 5715 420 300 36 16 chr4 45397800 45398047 -138890615 - L1ME LINE L1 -1487 4659 4408 2412 76 0 3 chr4 45398307 45398610 -138890052 + AluY SINE Alu 1 302 -9 1323 167 0 4 chr4 45398731 45398964 -138889698 + AluY SINE Alu 80 311 0 522 334 163 24 chr4 45399428 45399802 -138888860 - L2 LINE L2 -84 3229 2804 605 232 172 0 chr4 45399824 45399975 -138888687 - MER5A DNA MER1_type -6 183 7 1938 303 213 22 chr4 45399995 45401597 -138887065 - L2 LINE L2 -528 2786 879 2394 76 7 0 chr4 45403707 45404010 -138884652 - AluSp SINE Alu -8 305 1 818 310 39 0 chr4 45404833 45405065 -138883597 - MIR SINE MIR -5 257 17 23 33 0 0 chr4 45405472 45405502 -138883160 + AT_rich Low_complexity Low_complexity 1 30 0 2264 91 0 22 chr4 45406410 45406728 -138881934 - AluY SINE Alu 0 311 1 206 416 74 0 chr4 45407358 45407507 -138881155 - MIR3 SINE MIR -17 191 32 1666 173 30 0 chr4 45409727 45410028 -138878634 - AluJo SINE Alu -2 310 1 343 362 116 9 chr4 45410741 45410965 -138877697 - MIR SINE MIR 0 262 15 32 0 0 0 chr4 45411561 45411593 -138877069 + AT_rich Low_complexity Low_complexity 1 32 0 1952 130 11 59 chr4 45412638 45412992 -138875670 + MER1B DNA MER1_type 1 337 0 376 235 83 136 chr4 45413777 45414011 -138874651 + L1ME4a LINE L1 5615 5811 -310 1953 153 3 0 chr4 45414011 45414306 -138874356 + AluSx SINE Alu 1 296 -16 376 235 83 136 chr4 45414306 45414564 -138874098 + L1ME4a LINE L1 5811 6081 -40 269 316 34 26 chr4 45416113 45416230 -138872432 - MIR SINE MIR -89 173 56 4622 163 17 0 chr4 45416520 45417343 -138871319 - L1PB4 LINE L1 -3 6153 5317 2565 99 0 0 chr4 45417358 45417712 -138870950 - L1PB1 LINE L1 -1 6150 5797 1296 82 41 0 chr4 45417720 45417916 -138870746 + L1P5 LINE L1 5254 5457 -694 250 78 0 78 chr4 45417913 45417964 -138870698 - L1M LINE L1 -972 5331 5285 * 239 377 0 0 chr4 45418056 45418133 -138870529 - L1M2 LINE L1 -5933 916 840 1032 73 20 0 chr4 45418134 45418285 -138870377 + L1P5 LINE L1 5304 5457 -694 2351 53 6 35 chr4 45619381 45619699 -138668963 + AluY SINE Alu 1 309 -2 25 0 0 0 chr4 45619802 45619827 -138668835 + AT_rich Low_complexity Low_complexity 1 25 0 3875 161 25 3 chr4 45620758 45621464 -138667198 + MER50 LTR ERV1 1 722 -12 9017 204 47 17 chr4 45621464 45623248 -138665414 + MER50-int LTR ERV1 7 1843 -5362 * 10740 157 39 42 chr4 45623247 45626606 -138662056 + MER50-int LTR ERV1 2787 6200 -1005 2385 106 3 3 chr4 45626604 45626961 -138661701 + MER50-int LTR ERV1 6841 7197 -8 * 3289 136 62 67 chr4 45626961 45627668 -138660994 + MER50 LTR ERV1 1 704 -30 1450 202 82 58 chr4 45628946 45629397 -138659265 - MLT1C LTR MaLR 0 467 6 1583 172 13 55 chr4 45629851 45630159 -138658503 - AluJo SINE Alu -17 295 1 216 280 0 0 chr4 45630253 45630303 -138658359 + CT-rich Low_complexity Low_complexity 3 52 0 225 65 0 0 chr4 45630314 45630345 -138658317 + (CA)n Simple_repeat Simple_repeat 2 32 0 224 362 130 7 chr4 45630935 45631073 -138657589 + MIR SINE MIR 12 166 -96 684 84 0 37 chr4 45631121 45631251 -138657411 - AluSc SINE Alu 0 309 183 21 0 0 0 chr4 45631367 45631388 -138657274 + AT_rich Low_complexity Low_complexity 1 21 0 274 302 62 31 chr4 45632147 45632223 -138656439 - L2 LINE L2 -594 2720 2637 2605 207 18 4 chr4 45632223 45632736 -138655926 + MLT2B1 LTR ERVL 1 520 0 274 302 62 31 chr4 45632736 45632788 -138655874 - L2 LINE L2 -677 2637 2588 1890 240 15 43 chr4 45633408 45633942 -138654720 - LTR40a LTR ERVL 0 519 1 486 296 13 0 chr4 45634203 45634362 -138654300 - MLT1A1 LTR MaLR -2 363 203 568 244 17 39 chr4 45634420 45634600 -138654062 - MLT1A1 LTR MaLR -186 179 4 1126 237 4 4 chr4 45635219 45635472 -138653190 + AluJo SINE Alu 1 253 -59 3347 188 42 4 chr4 45635576 45636333 -138652329 - L1 LINE L1 -1899 4949 4164 1419 318 20 73 chr4 45636348 45637306 -138651356 - L1 LINE L1 -5933 916 10 2474 133 57 0 chr4 45638506 45638911 -138649751 + MSTA LTR MaLR 1 428 0 7712 174 53 11 chr4 45638913 45640197 -138648465 + MSTA-int LTR MaLR 3 1367 -284 1443 127 45 0 chr4 45640197 45640417 -138648245 + MER30 DNA MER1_type 1 230 0 7712 174 53 11 chr4 45640417 45640715 -138647947 + MSTA-int LTR MaLR 1367 1651 0 2118 165 57 2 chr4 45640716 45641121 -138647541 + MSTA LTR MaLR 2 428 0 326 255 33 39 chr4 45641833 45641986 -138646676 + L1ME4a LINE L1 5934 6085 -36 204 143 71 0 chr4 45642764 45642806 -138645856 + (CAGAGA)n Simple_repeat Simple_repeat 2 46 0 650 248 20 106 chr4 45644027 45644144 -138644518 + MIR SINE MIR 37 124 -138 1358 159 17 0 chr4 45644144 45644376 -138644286 - MER46A DNA MER2_type 0 236 1 650 248 20 106 chr4 45644376 45644504 -138644158 + MIR SINE MIR 124 261 -1 456 301 81 11 chr4 45644688 45644874 -138643788 - MIR SINE MIR -53 209 11 219 389 0 9 chr4 45645026 45645134 -138643528 + L2 LINE L2 3165 3271 -1 1339 177 4 31 chr4 45645451 45645705 -138642957 + AluSx SINE Alu 7 253 -59 230 93 47 0 chr4 45645884 45645927 -138642735 + AluSx SINE Alu 255 299 -1 255 170 0 0 chr4 45646442 45646489 -138642173 + (CA)n Simple_repeat Simple_repeat 1 47 0 456 270 196 0 chr4 45648728 45648891 -138639771 - MIR SINE MIR -36 226 32 346 334 183 22 chr4 45648941 45649404 -138639258 - L2 LINE L2 -172 3100 2549 458 314 244 22 chr4 45650353 45650811 -138637851 + L2 LINE L2 2049 2608 -706 254 342 92 8 chr4 45651256 45651376 -138637286 - MIR3 SINE MIR -74 134 5 238 284 12 12 chr4 45652274 45652355 -138636307 + MIR SINE MIR 96 176 -86 975 142 0 0 chr4 45653893 45654027 -138634635 + AluJo SINE Alu 1 134 -178 1541 184 29 56 chr4 45654042 45654417 -138634245 + MLT1A1 LTR MaLR 1 365 0 242 189 19 57 chr4 45654570 45654614 -138634048 + Charlie7 DNA MER1_type 41 85 -2527 1426 159 137 31 chr4 45654614 45654935 -138633727 - THE1A LTR MaLR 0 355 1 242 189 19 57 chr4 45654935 45654996 -138633666 + Charlie7 DNA MER1_type 85 142 -2470 264 320 44 19 chr4 45655557 45655763 -138632899 + L1MC/D LINE L1 5456 5666 -455 2483 66 0 3 chr4 45655788 45656092 -138632570 + AluY SINE Alu 1 303 -8 249 286 0 0 chr4 45656106 45656176 -138632486 + L1MC/D LINE L1 5737 5806 -2002 862 278 129 19 chr4 45656185 45656660 -138632002 + MLT1H1 LTR MaLR 7 595 0 2022 161 74 83 chr4 45658049 45658566 -138630096 - MER44D DNA MER2_type -1882 605 37 2348 168 26 5 chr4 45658566 45658989 -138629673 + MSTB1 LTR MaLR 1 432 0 2022 161 74 83 chr4 45658989 45659025 -138629637 - MER44D DNA MER2_type -2450 37 2 197 33 33 0 chr4 45659511 45659541 -138629121 + (TG)n Simple_repeat Simple_repeat 2 32 0 38821 72 3 2 chr4 45660619 45666279 -138622383 - L1P2 LINE L1 -488 5666 3 5484 126 27 4 chr4 45666616 45668330 -138620332 - L1PA10 LINE L1 -29 6139 4391 1681 214 51 65 chr4 45668730 45669055 -138619607 - MLT1D LTR MaLR 0 505 188 1650 117 0 0 chr4 45669055 45669278 -138619384 + AluSc SINE Alu 86 308 -1 1681 214 51 65 chr4 45669278 45669462 -138619200 - MLT1D LTR MaLR -317 188 3 244 266 0 25 chr4 45671229 45671308 -138617354 + L2 LINE L2 2399 2475 -839 598 208 15 15 chr4 45671325 45671455 -138617207 + MLT1H LTR MaLR 12 141 -408 41 0 0 0 chr4 45671455 45671496 -138617166 + AT_rich Low_complexity Low_complexity 1 41 0 3369 202 6 13 chr4 45671619 45672321 -138616341 - L1MB8 LINE L1 -1 6177 5481 25 51 0 0 chr4 45673019 45673058 -138615604 + AT_rich Low_complexity Low_complexity 1 39 0 417 255 78 116 chr4 45673580 45674039 -138614623 - MLT1J2 LTR MaLR -4 446 1 184 191 71 0 chr4 45674062 45674104 -138614558 - MIR SINE MIR -124 138 94 185 240 80 0 chr4 45674257 45674307 -138614355 + MIR SINE MIR 47 100 -162 206 326 206 16 chr4 45674326 45674510 -138614152 + MIR SINE MIR 44 262 0 260 306 139 0 chr4 45676851 45676995 -138611667 + MIR3 SINE MIR 42 205 -3 396 305 86 11 chr4 45677536 45677723 -138610939 + L1ME LINE L1 380 580 -5625 1258 267 69 81 chr4 45678036 45678570 -138610092 + L1ME LINE L1 782 1321 -5075 1354 191 24 60 chr4 45678570 45678868 -138609794 + AluJo SINE Alu 3 289 -23 1258 267 69 81 chr4 45678868 45679603 -138609059 + L1ME LINE L1 1321 2036 -4360 1964 218 89 103 chr4 45679808 45680243 -138608419 + L1MB4 LINE L1 2220 2660 -3486 258 111 0 0 chr4 45680243 45680279 -138608383 + U2 snRNA snRNA 1 36 -152 1964 218 89 103 chr4 45680279 45680963 -138607699 + L1MB4 LINE L1 2660 3360 -2786 328 308 8 0 chr4 45681090 45681210 -138607452 + L1MB4 LINE L1 4927 5047 -1099 1461 184 0 21 chr4 45681824 45682107 -138606555 + AluJo SINE Alu 35 311 -1 918 281 147 19 chr4 45682566 45683057 -138605605 - L2 LINE L2 -11 3302 2736 349 301 148 34 chr4 45683475 45683684 -138604978 + MIR SINE MIR 29 261 -1 2945 168 52 28 chr4 45684104 45684753 -138603909 + L1MB4 LINE L1 5515 6179 -1 519 312 58 31 chr4 45685495 45685643 -138603019 - L1ME4a LINE L1 -237 6382 6239 1958 148 27 51 chr4 45685643 45686016 -138602646 + THE1B LTR MaLR 1 364 0 519 312 58 31 chr4 45686016 45686385 -138602277 - L1ME4a LINE L1 -380 6239 5837 22 0 0 0 chr4 45686766 45686788 -138601874 + AT_rich Low_complexity Low_complexity 1 22 0 297 0 0 0 chr4 45687083 45687116 -138601546 + (TG)n Simple_repeat Simple_repeat 2 34 0 7111 121 14 6 chr4 45687303 45688816 -138599846 - L1MA1 LINE L1 -2 6300 4777 1682 183 23 9 chr4 45688862 45689212 -138599450 - L1MA4 LINE L1 -7 6293 5939 705 280 62 12 chr4 45689763 45690066 -138598596 - L1ME3 LINE L1 -6 6158 5840 2080 200 65 15 chr4 45690068 45690548 -138598114 + LTR22 LTR ERVK 1 504 -5 4229 122 42 21 chr4 45690564 45690886 -138597776 + HERVK22 LTR ERVK 3 317 -6520 1881 107 89 0 chr4 45690886 45691167 -138597495 - AluY SINE Alu -5 306 1 4229 122 42 21 chr4 45691167 45691515 -138597147 + HERVK22 LTR ERVK 317 687 -6150 257 146 36 18 chr4 45691597 45691652 -138597010 - L1ME3 LINE L1 -352 5814 5759 * 7155 243 71 25 chr4 45691636 45692444 -138596218 - L1M4 LINE L1 -1456 5188 4419 846 219 166 53 chr4 45692444 45692800 -138595862 - MSTD LTR MaLR 0 396 1 7155 243 71 25 chr4 45692800 45694115 -138594547 - L1M4 LINE L1 -2225 4419 2934 241 26 53 0 chr4 45694115 45694153 -138594509 + (TA)n Simple_repeat Simple_repeat 1 40 0 7155 243 71 25 chr4 45694153 45694961 -138593701 - L1M4 LINE L1 -3710 2934 2165 3299 217 130 86 chr4 45694962 45695430 -138593232 - L1M4 LINE L1 -4690 1956 1510 2157 145 50 38 chr4 45695430 45695621 -138593041 + MSTA LTR MaLR 3 190 -238 1872 145 0 18 chr4 45695621 45695944 -138592718 + AluSc SINE Alu 1 318 0 2157 145 50 38 chr4 45695944 45696172 -138592490 + MSTA LTR MaLR 190 428 0 8480 185 36 2 chr4 45696172 45697764 -138590898 + MSTA-int LTR MaLR 1 1647 -4 2447 118 62 5 chr4 45697774 45698179 -138590483 + MSTA LTR MaLR 1 428 0 3299 217 130 86 chr4 45698179 45699465 -138589197 - L1M4 LINE L1 -5144 1502 46 423 380 0 16 chr4 45699496 45699683 -138588979 + L2 LINE L2 2617 2800 -514 830 315 74 33 chr4 45700216 45700607 -138588055 + HERV16 LTR ERVL 2112 2518 -2478 * 2313 340 83 54 chr4 45700592 45702977 -138585685 + HERV16 LTR ERVL 2667 5134 -630 1555 185 36 36 chr4 45702977 45703340 -138585322 + MLT1A1 LTR MaLR 3 365 0 2313 340 83 54 chr4 45703340 45703539 -138585123 + HERV16 LTR ERVL 5134 5326 -438 556 333 62 29 chr4 45703659 45703935 -138584727 + LTR16A LTR ERVL 79 363 -87 37 76 0 0 chr4 45704904 45704983 -138583679 + AT_rich Low_complexity Low_complexity 1 79 0 33 90 0 0 chr4 45704995 45705084 -138583578 + AT_rich Low_complexity Low_complexity 1 89 0 340 254 55 114 chr4 45705088 45705308 -138583354 - L1ME3A LINE L1 -2 6168 5962 687 205 36 20 chr4 45705343 45705558 -138583104 - L1ME3A LINE L1 -220 5950 5760 900 245 0 60 chr4 45705564 45705878 -138582784 - L1MA4 LINE L1 -3 6297 6003 1190 247 104 7 chr4 45705884 45706653 -138582009 - L1ME3A LINE L1 -405 5757 4917 418 251 61 32 chr4 45706835 45707082 -138581580 - L1ME3A LINE L1 -1594 4552 4299 5144 106 14 39 chr4 45707108 45707923 -138580739 - L1PA11 LINE L1 -21 7591 6798 477 94 35 0 chr4 45707923 45708008 -138580654 + (TA)n Simple_repeat Simple_repeat 2 89 0 18870 196 75 21 chr4 45708008 45710075 -138578587 - L1PA11 LINE L1 -792 6792 4838 2171 106 0 3 chr4 45710075 45710368 -138578294 - AluY SINE Alu -19 292 1 18870 196 75 21 chr4 45710368 45713448 -138575214 - L1PA11 LINE L1 -2746 4838 576 1807 80 4 17 chr4 45713548 45713786 -138574876 - AluSp SINE Alu -69 244 10 466 321 74 14 chr4 45715494 45715709 -138572953 - MIR SINE MIR -6 256 29 23 0 0 0 chr4 45716560 45716583 -138572079 + AT_rich Low_complexity Low_complexity 1 23 0 349 293 213 5 chr4 45716959 45717147 -138571515 - MIR SINE MIR -28 234 8 273 350 20 20 chr4 45717526 45717626 -138571036 - MIR SINE MIR -93 115 16 22 0 0 0 chr4 45718622 45718644 -138570018 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4 45719040 45719061 -138569601 + AT_rich Low_complexity Low_complexity 1 21 0 532 293 86 10 chr4 45719683 45719881 -138568781 - MIR SINE MIR -24 238 26 189 0 0 0 chr4 45719918 45719939 -138568723 + (CAAAG)n Simple_repeat Simple_repeat 2 22 0 208 310 92 23 chr4 45720821 45720908 -138567754 - MIR SINE MIR -59 203 111 25 65 0 0 chr4 45721140 45721186 -138567476 + AT_rich Low_complexity Low_complexity 1 46 0 1935 144 35 3 chr4 45722009 45722328 -138566334 - MER2 DNA MER2_type -16 329 1 423 246 153 0 chr4 45722335 45722453 -138566209 - MIR SINE MIR -74 188 53 670 274 30 4 chr4 45722496 45722726 -138565936 - HAL1b LINE L1 -264 1084 849 3089 160 54 42 chr4 45722762 45723189 -138565473 - L1MA4 LINE L1 0 6300 5730 3945 92 48 30 chr4 45723189 45723818 -138564844 - MER51C LTR ERV1 0 640 1 3089 160 54 42 chr4 45723818 45724034 -138564628 - L1MA4 LINE L1 -570 5730 5518 308 226 23 60 chr4 45724032 45724165 -138564497 - HAL1b LINE L1 -568 780 653 * 253 313 45 0 chr4 45724634 45724701 -138563961 - L2 LINE L2 -9 3263 3194 349 281 13 65 chr4 45724892 45725045 -138563617 + MER5A DNA MER1_type 40 184 -5 254 333 0 24 chr4 45725437 45725521 -138563141 - MIR3 SINE MIR -116 92 11 276 301 81 15 chr4 45726506 45726642 -138562020 - MER90 LTR ERV1 -69 545 401 788 213 25 35 chr4 45726825 45727022 -138561640 - LTR65 LTR ERV1 -273 396 202 759 160 0 0 chr4 45727088 45727213 -138561449 + FLAM_C SINE Alu 1 125 -18 6195 138 51 28 chr4 45727385 45727702 -138560960 + Tigger3b DNA MER2_type 1 309 -2719 2191 109 3 6 chr4 45727702 45728013 -138560649 - AluSg SINE Alu 0 310 1 6195 138 51 28 chr4 45728013 45728377 -138560285 + Tigger3b DNA MER2_type 309 663 -2365 2120 115 0 0 chr4 45728377 45728672 -138559990 - AluY SINE Alu -16 295 1 6195 138 51 28 chr4 45728672 45729193 -138559469 + Tigger3b DNA MER2_type 663 1231 0 1151 247 55 68 chr4 45729299 45729813 -138558849 - L1M4 LINE L1 -2196 3950 3444 3998 182 62 20 chr4 45729821 45730846 -138557816 - L1MB7 LINE L1 -16 6666 5599 773 136 88 0 chr4 45730863 45731010 -138557652 + MER5C DNA MER1_type 165 324 0 3662 236 63 119 chr4 45731205 45731940 -138556722 - L1MB7 LINE L1 -1072 5572 4797 4632 119 25 4 chr4 45731940 45732655 -138556007 + L1PA16 LINE L1 5427 6156 -10 3662 236 63 119 chr4 45732655 45732931 -138555731 - L1MB7 LINE L1 -1847 4797 4507 264 30 0 0 chr4 45732931 45732964 -138555698 + (TG)n Simple_repeat Simple_repeat 2 34 0 3662 236 63 119 chr4 45732964 45734068 -138554594 - L1MB7 LINE L1 -2137 4507 3575 2522 239 119 29 chr4 45734076 45734098 -138554564 - L1MB7 LINE L1 -5575 967 948 234 0 0 0 chr4 45734098 45734124 -138554538 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2522 239 119 29 chr4 45734124 45734271 -138554391 - L1MB7 LINE L1 -5594 948 816 276 30 0 0 chr4 45734271 45734304 -138554358 + (TG)n Simple_repeat Simple_repeat 2 34 0 2522 239 119 29 chr4 45734304 45734965 -138553697 - L1MB7 LINE L1 -5726 816 61 2944 259 21 38 chr4 45734973 45735921 -138552741 - L1MEc LINE L1 -5419 977 46 23 0 0 0 chr4 45737160 45737183 -138551479 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr4 45737465 45737495 -138551167 + AT_rich Low_complexity Low_complexity 1 30 0 289 352 22 0 chr4 45738186 45738277 -138550385 + L2 LINE L2 3199 3291 -22 373 339 210 10 chr4 45739107 45739621 -138549041 + L2 LINE L2 1884 2500 -814 411 299 67 41 chr4 45739738 45739932 -138548730 + MLT1L LTR MaLR 172 370 -245 2571 197 38 2 chr4 45739999 45740501 -138548161 + MLT2B1 LTR ERVL 1 520 0 402 347 39 53 chr4 45740593 45740930 -138547732 + L2 LINE L2 2516 2847 -467 198 219 31 62 chr4 45741238 45741302 -138547360 + L2 LINE L2 2916 2977 -336 894 287 31 46 chr4 45741511 45741835 -138546827 - LTR40a LTR ERVL -118 401 83 1831 292 138 10 chr4 45741886 45742637 -138546025 + L2 LINE L2 2202 3037 -276 272 235 12 59 chr4 45742663 45742748 -138545914 + L2 LINE L2 2288 2368 -946 233 298 0 0 chr4 45742748 45742805 -138545857 + L2 LINE L2 3257 3313 0 451 267 133 24 chr4 45742816 45742981 -138545681 + MIR SINE MIR 60 242 -20 33 43 0 0 chr4 45743056 45743103 -138545559 + AT_rich Low_complexity Low_complexity 1 47 0 1033 151 0 24 chr4 45743189 45743355 -138545307 + FRAM SINE Alu 1 161 -15 303 288 127 8 chr4 45743367 45743485 -138545177 - MIR SINE MIR -45 217 86 2741 62 3 0 chr4 45743511 45743864 -138544798 - L1PA5 LINE L1 0 6154 5801 330 279 0 0 chr4 45744210 45744278 -138544384 + L2 LINE L2 3205 3272 0 23 54 0 0 chr4 45744469 45744506 -138544156 + AT_rich Low_complexity Low_complexity 1 37 0 21 71 0 0 chr4 45744832 45744874 -138543788 + AT_rich Low_complexity Low_complexity 1 42 0 1548 257 67 60 chr4 45745155 45745706 -138542956 + MLT1E LTR MaLR 1 550 -40 324 344 16 0 chr4 45746137 45746262 -138542400 + MIR3 SINE MIR 53 179 -29 21 0 0 0 chr4 45746300 45746321 -138542341 + AT_rich Low_complexity Low_complexity 1 21 0 704 234 0 14 chr4 45747439 45747584 -138541078 - FRAM SINE Alu -30 146 4 22 35 0 0 chr4 45747716 45747745 -138540917 + AT_rich Low_complexity Low_complexity 1 29 0 715 284 57 18 chr4 45748859 45749088 -138539574 + MIR SINE MIR 14 251 -11 311 324 0 0 chr4 45749296 45749370 -138539292 + L2 LINE L2 3234 3307 -6 1974 147 22 46 chr4 45749386 45749754 -138538908 + THE1C LTR MaLR 17 375 0 434 269 19 50 chr4 45749806 45749966 -138538696 - MLT1G1 LTR MaLR 0 595 441 226 175 53 0 chr4 45749977 45750034 -138538628 - MLT1G1 LTR MaLR -202 328 269 2026 221 63 20 chr4 45750050 45750561 -138538101 + MLT1E2 LTR MaLR 94 626 0 1789 182 80 42 chr4 45750888 45751338 -138537324 + MLT1C LTR MaLR 1 467 0 2320 166 53 30 chr4 45751348 45751854 -138536808 + MLT1C-int LTR MaLR 14 531 -840 719 222 6 54 chr4 45751854 45752034 -138536628 + MLT2C2 LTR ERVL 231 349 -48 191 217 17 0 chr4 45752070 45752130 -138536532 + (TA)n Simple_repeat Simple_repeat 2 62 0 417 195 73 0 chr4 45752585 45752667 -138535995 + MER67B LTR ERV1 109 196 -465 340 203 259 25 chr4 45752662 45752898 -138535764 - MER113 DNA MER1_type? -159 362 72 * 350 242 53 0 chr4 45752910 45753005 -138535657 + MER67A LTR ERV1 1 100 -443 423 178 0 0 chr4 45753040 45753120 -138535542 + MER67A LTR ERV1 34 141 -402 238 314 204 0 chr4 45753123 45753260 -138535402 + L2 LINE L2 2452 2616 -698 2305 60 3 0 chr4 45753274 45753559 -138535103 - AluY SINE Alu -25 286 1 1986 168 39 21 chr4 45754174 45754555 -138534107 + MLT1B LTR MaLR 1 388 -2 528 332 59 21 chr4 45754828 45755066 -138533596 + MIR SINE MIR 13 259 -3 555 248 110 8 chr4 45755442 45755829 -138532833 - MER113 DNA MER1_type? -4 517 53 414 165 99 0 chr4 45755829 45755903 -138532759 + MER67A LTR ERV1 1 83 -460 1780 203 70 51 chr4 45755903 45756416 -138532246 + MER67A LTR ERV1 1 543 0 2204 95 0 0 chr4 45756588 45756884 -138531778 + AluSg SINE Alu 1 296 -14 182 352 112 0 chr4 45757439 45757635 -138531027 + MIR SINE MIR 29 246 -16 233 198 198 10 chr4 45758243 45758339 -138530323 + MIR SINE MIR 21 134 -128 226 294 44 0 chr4 45758365 45758433 -138530229 - MIR SINE MIR -35 227 157 199 240 80 13 chr4 45758465 45758540 -138530122 + MIR SINE MIR 67 146 -116 182 294 0 127 chr4 45759971 45760097 -138528565 - L2 LINE L2 -1605 1709 1600 277 331 105 24 chr4 45761192 45761316 -138527346 + L2 LINE L2 3134 3267 -5 23 54 0 0 chr4 45762127 45762164 -138526498 + AT_rich Low_complexity Low_complexity 1 37 0 321 303 31 55 chr4 45762770 45762977 -138525685 - MIR3 SINE MIR -56 206 3 290 364 165 0 chr4 45763651 45763969 -138524693 - L2 LINE L2 -301 2971 2585 390 362 105 20 chr4 45764205 45764502 -138524160 - L2 LINE L2 -2098 1216 875 995 171 62 24 chr4 45764502 45764712 -138523950 + MER20 DNA MER1_type 1 218 -1 390 362 105 20 chr4 45764712 45764815 -138523847 - L2 LINE L2 -2439 875 782 229 264 55 45 chr4 45764868 45764978 -138523684 - MIR SINE MIR -45 217 107 21 36 0 0 chr4 45765678 45765706 -138522956 + AT_rich Low_complexity Low_complexity 1 28 0 21 95 0 0 chr4 45765771 45765834 -138522828 + AT_rich Low_complexity Low_complexity 1 63 0 227 200 0 0 chr4 45766522 45766562 -138522100 - L2 LINE L2 -12 3301 3262 196 310 80 26 chr4 45766567 45766680 -138521982 + MIR3 SINE MIR 84 202 -6 21 0 0 0 chr4 45768787 45768808 -138519854 + AT_rich Low_complexity Low_complexity 1 21 0 205 195 0 0 chr4 45770308 45770349 -138518313 + (TA)n Simple_repeat Simple_repeat 1 41 0 28 29 0 0 chr4 45770350 45770385 -138518277 + AT_rich Low_complexity Low_complexity 1 35 0 189 0 0 0 chr4 45771737 45771758 -138516904 + (TTG)n Simple_repeat Simple_repeat 1 21 0 207 351 15 84 chr4 45772712 45772843 -138515819 + L2 LINE L2 3150 3271 -1 518 187 0 11 chr4 45773166 45773257 -138515405 - MIR SINE MIR -18 244 155 183 42 0 0 chr4 45774130 45774154 -138514508 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2199 71 4 0 chr4 45774160 45774429 -138514233 - AluSc SINE Alu -35 274 5 242 248 116 16 chr4 45774452 45774573 -138514089 + L1ME LINE L1 5725 5857 -264 463 221 115 9 chr4 45775646 45775759 -138512903 + FLAM_A SINE Alu 1 125 -17 30 27 0 0 chr4 45776968 45777005 -138511657 + AT_rich Low_complexity Low_complexity 1 37 0 1849 149 7 3 chr4 45777198 45777486 -138511176 + AluSx SINE Alu 7 295 -17 744 248 98 14 chr4 45778152 45778366 -138510296 + MIR SINE MIR 14 245 -17 672 176 93 69 chr4 45778374 45778521 -138510141 + MER6B DNA MER2_type 1 156 -709 2033 97 49 3 chr4 45778521 45778809 -138509853 - AluSg SINE Alu -9 301 1 672 176 93 69 chr4 45778809 45778865 -138509797 + MER6B DNA MER2_type 156 209 -1 2719 124 115 51 chr4 45779479 45780043 -138508619 + MER4A LTR ERV1 1 600 0 22 0 0 0 chr4 45783973 45783995 -138504667 + AT_rich Low_complexity Low_complexity 1 22 0 600 294 39 35 chr4 45785027 45785258 -138503404 + MIR SINE MIR 2 233 -29 386 201 186 41 chr4 45785601 45785795 -138502867 + L1ME4a LINE L1 5712 5933 -188 322 210 0 0 chr4 45785807 45785869 -138502793 + MER113 DNA MER1_type? 1 62 -459 467 233 67 0 chr4 45785930 45786050 -138502612 - MER104 DNA Tc2 -3 177 50 472 276 177 0 chr4 45788167 45788348 -138500314 - MIR SINE MIR -38 224 12 236 175 0 0 chr4 45788800 45788840 -138499822 + MER5A DNA MER1_type 150 189 0 906 193 46 69 chr4 45789062 45789280 -138499382 + AluJb SINE Alu 81 293 -19 300 342 59 26 chr4 45790782 45790934 -138497728 - MIR3 SINE MIR -46 162 6 224 256 0 49 chr4 45790959 45791041 -138497621 + MIR3 SINE MIR 94 171 -37 641 236 65 41 chr4 45791055 45791111 -138497551 + MER112 DNA MER1_type 8 61 -199 210 71 0 0 chr4 45791111 45791139 -138497523 + (TA)n Simple_repeat Simple_repeat 1 28 0 641 236 65 41 chr4 45791139 45791328 -138497334 + MER112 DNA MER1_type 61 259 -1 22 0 0 0 chr4 45791830 45791852 -138496810 + AT_rich Low_complexity Low_complexity 1 22 0 194 359 13 26 chr4 45792149 45792227 -138496435 + L2 LINE L2 2977 3053 -219 492 251 89 94 chr4 45842240 45842475 -138446187 - MIR SINE MIR -27 235 2 1762 261 41 32 chr4 45842604 45843088 -138445574 - MLT1F LTR MaLR 0 542 51 1970 187 3 14 chr4 45843088 45843457 -138445205 - MLT1A1 LTR MaLR 0 365 1 1762 261 41 32 chr4 45843457 45843509 -138445153 - MLT1F LTR MaLR -491 51 1 6663 144 17 2 chr4 45843691 45845163 -138443499 + L1MA2 LINE L1 4807 6304 0 312 222 30 11 chr4 45845192 45845306 -138443356 + L1MC4 LINE L1 7880 8038 -1 26 0 0 0 chr4 45845473 45845499 -138443163 + AT_rich Low_complexity Low_complexity 1 26 0 272 93 0 19 chr4 45845499 45845553 -138443109 + (TTTTTA)n Simple_repeat Simple_repeat 3 55 0 1032 207 19 9 chr4 45845688 45845901 -138442761 + MER20 DNA MER1_type 1 215 -4 9039 182 38 33 chr4 45846062 45848071 -138440591 - L1 LINE L1 -1635 5930 3933 227 136 0 0 chr4 45848071 45848115 -138440547 + LTR66 LTR ERVL 395 438 -172 9039 182 38 33 chr4 45848115 45848684 -138439978 - L1 LINE L1 -3632 3933 3368 2523 47 0 0 chr4 45848684 45848983 -138439679 + AluY SINE Alu 1 299 -12 9039 182 38 33 chr4 45848983 45849504 -138439158 - L1 LINE L1 -4197 3368 2771 9883 209 27 59 chr4 45849605 45853428 -138435234 - L1PA16 LINE L1 -177 5989 2299 410 372 94 47 chr4 45854564 45854946 -138433716 - L2 LINE L2 -3 3269 2870 259 211 0 0 chr4 45856696 45856748 -138431914 - L2 LINE L2 -5 3308 3257 2372 24 48 10 chr4 45856767 45857061 -138431601 + AluY SINE Alu 1 305 -6 604 196 35 7 chr4 45857229 45857372 -138431290 - L1MA10 LINE L1 -8 6326 6180 744 281 71 10 chr4 45857414 45857778 -138430884 - L1ME1 LINE L1 -163 6070 5669 228 35 0 0 chr4 45857787 45857816 -138430846 + (TA)n Simple_repeat Simple_repeat 2 30 0 1142 227 32 41 chr4 45857828 45857869 -138430793 - L1ME1 LINE L1 -581 5650 5610 1651 139 73 21 chr4 45857869 45858157 -138430505 - AluSq SINE Alu -6 307 5 1142 227 32 41 chr4 45858157 45858701 -138429961 - L1ME1 LINE L1 -621 5610 5095 362 355 152 12 chr4 45859450 45859785 -138428877 + L2 LINE L2 2860 3241 -31 188 314 14 0 chr4 45859804 45859874 -138428788 + MIR SINE MIR 90 160 -102 381 251 34 17 chr4 45860166 45860369 -138428293 - HAL1b LINE L1 -119 2388 797 752 327 65 22 chr4 45861063 45861570 -138427092 - HAL1 LINE L1 -749 1758 1230 225 239 23 11 chr4 45861589 45861677 -138426985 + (TTTA)n Simple_repeat Simple_repeat 4 92 0 361 241 85 18 chr4 45864934 45865045 -138423617 - FLAM_A SINE Alu -28 105 2 2383 68 0 34 chr4 45866070 45866392 -138422270 + AluY SINE Alu 1 311 0 684 297 156 3 chr4 45867395 45867785 -138420877 + LTR16A LTR ERVL 1 450 0 895 210 118 32 chr4 45868320 45868648 -138420014 - MLT1A1 LTR MaLR 0 396 3 231 227 45 15 chr4 45869771 45869837 -138418825 - LTR33A LTR ERVL -8 515 448 1463 236 41 6 chr4 45870567 45871033 -138417629 - L1ME1 LINE L1 -1428 4787 4306 2751 255 58 50 chr4 45871044 45873432 -138415230 - L1ME1 LINE L1 -2005 4210 32 2284 90 0 3 chr4 45874552 45874863 -138413799 - AluY SINE Alu 0 311 2 3792 182 3 3 chr4 45874890 45875549 -138413113 + L1PA16 LINE L1 5484 6142 -24 295 321 150 35 chr4 45875942 45876309 -138412353 - LTR33 LTR ERVL -112 409 1 392 297 10 0 chr4 45876535 45876636 -138412026 + MER81 DNA DNA 12 113 -1 6337 179 7 13 chr4 45876858 45876991 -138411671 - L1 LINE L1 -873 5273 5141 2267 118 8 35 chr4 45876991 45877365 -138411297 + THE1B LTR MaLR 1 364 0 11279 104 1 0 chr4 45877365 45878943 -138409719 + THE1B-int LTR MaLR 1 1580 0 2418 109 5 35 chr4 45878943 45879318 -138409344 + THE1B LTR MaLR 1 364 0 6337 179 7 13 chr4 45879318 45880467 -138408195 - L1 LINE L1 -1002 5144 3997 1927 171 8 13 chr4 45880467 45880845 -138407817 + L1MA4 LINE L1 5921 6297 -3 317 311 89 0 chr4 45882134 45882269 -138406393 + L3 LINE CR1 1229 1375 -202 1741 71 0 0 chr4 45882442 45882652 -138406010 - AluY SINE Alu -14 297 88 340 235 15 0 chr4 45885040 45885108 -138403554 + MIR SINE MIR 7 75 -187 536 258 57 48 chr4 45885195 45885404 -138403258 + MIR SINE MIR 52 262 0 205 258 16 0 chr4 45885407 45885469 -138403193 + (TCTCTG)n Simple_repeat Simple_repeat 4 66 0 417 309 159 23 chr4 45885634 45885854 -138402808 - MIR SINE MIR -2 260 11 1256 78 0 0 chr4 45886657 45886823 -138401839 - AluY SINE Alu 0 311 146 199 254 45 15 chr4 45887457 45887524 -138401138 + MIR3 SINE MIR 125 193 -15 1123 171 47 33 chr4 45888586 45888797 -138399865 - MER20 DNA MER1_type 0 219 6 329 194 9 111 chr4 45889136 45889244 -138399418 - MLT1F-int LTR MaLR -1269 102 6 1426 260 79 37 chr4 45889253 45889707 -138398955 - MLT1F LTR MaLR -4 538 66 1636 133 60 38 chr4 45889809 45890124 -138398538 + THE1C LTR MaLR 54 375 0 1008 242 112 9 chr4 45890124 45890455 -138398207 - L1 LINE L1 -3139 3007 2643 356 260 133 54 chr4 45890853 45891222 -138397440 + L1ME4a LINE L1 5721 6118 -3 29 0 0 0 chr4 45891641 45891670 -138396992 + AT_rich Low_complexity Low_complexity 1 29 0 218 305 42 68 chr4 45891928 45892046 -138396616 - L2 LINE L2 -263 3050 2936 192 97 0 0 chr4 45893817 45893848 -138394814 + (TTTTTG)n Simple_repeat Simple_repeat 1 31 0 777 276 51 0 chr4 45895888 45896102 -138392560 + MIR SINE MIR 4 228 -34 2212 230 77 35 chr4 45896222 45896858 -138391804 + L1MD2 LINE L1 5696 6358 -1 205 186 51 0 chr4 45896953 45897012 -138391650 + A-rich Low_complexity Low_complexity 5 66 0 417 20 0 0 chr4 45897121 45897171 -138391491 + (TG)n Simple_repeat Simple_repeat 2 51 0 741 211 0 14 chr4 45898425 45898572 -138390090 + MLT2C1 LTR ERVL 251 395 -2 23 33 0 0 chr4 45900194 45900224 -138388438 + AT_rich Low_complexity Low_complexity 1 30 0 217 279 25 0 chr4 45900421 45900500 -138388162 + (TA)n Simple_repeat Simple_repeat 2 82 0 672 351 86 5 chr4 45902586 45903019 -138385643 - L1MC4a LINE L1 -1903 5905 5438 2625 104 3 26 chr4 45903987 45904371 -138384291 + THE1C LTR MaLR 1 375 0 536 294 118 25 chr4 45905266 45905776 -138382886 - L1ME4a LINE L1 -1 6120 5564 364 176 28 50 chr4 45905943 45906125 -138382537 + (TTATA)n Simple_repeat Simple_repeat 2 179 0 286 312 129 18 chr4 45906960 45907130 -138381532 + L2 LINE L2 2224 2412 -902 297 326 0 0 chr4 45909005 45909094 -138379568 - MIR SINE MIR -3 259 171 300 250 91 0 chr4 45909819 45909907 -138378755 - L2 LINE L2 -1 3271 3176 191 200 0 25 chr4 45910155 45910195 -138378467 - L2 LINE L2 -606 2708 2670 745 309 193 15 chr4 45910544 45911147 -138377515 - L2 LINE L2 0 3313 2593 755 332 84 22 chr4 45911307 45911662 -138377000 - L2 LINE L2 -2725 589 213 310 341 23 16 chr4 45911665 45911794 -138376868 + MER94 DNA DNA 5 134 0 491 309 13 0 chr4 45911797 45911949 -138376713 - L2 LINE L2 -3113 201 48 354 246 134 58 chr4 45911945 45912116 -138376546 - L2 LINE L2 -235 3037 2854 * 458 306 141 21 chr4 45915095 45915337 -138373325 + Charlie8 DNA MER1_type 1 271 -2146 28 0 0 0 chr4 45915553 45915581 -138373081 + AT_rich Low_complexity Low_complexity 1 28 0 210 250 39 0 chr4 45915616 45915668 -138372994 + GA-rich Low_complexity Low_complexity 2 55 0 307 286 149 83 chr4 45916112 45916448 -138372214 + L3 LINE CR1 337 694 -883 301 289 19 109 chr4 45916627 45916717 -138371945 + L3 LINE CR1 928 1000 -577 484 326 53 0 chr4 45916717 45916904 -138371758 + MER117 DNA MER1_type 1 197 0 301 289 19 109 chr4 45916904 45916969 -138371693 + L3 LINE CR1 1000 1069 -508 387 127 0 0 chr4 45917022 45917085 -138371577 - L1P5 LINE L1 -619 5537 5475 1589 127 0 0 chr4 45917434 45917687 -138370975 - L1MA2 LINE L1 0 6304 6052 1034 209 43 0 chr4 45917753 45917963 -138370699 + MER20 DNA MER1_type 1 219 0 195 241 35 35 chr4 45918088 45918146 -138370516 - L3 LINE CR1 -283 1294 1237 228 322 81 57 chr4 45918161 45918372 -138370290 + MIR SINE MIR 21 236 -26 556 250 67 17 chr4 45919392 45919600 -138369062 + MIR SINE MIR 12 235 -27 309 213 50 0 chr4 45921145 45921225 -138367437 - L1MCa LINE L1 -4362 2064 1981 314 200 14 14 chr4 45922046 45922116 -138366546 - MIR SINE MIR -21 241 172 216 0 0 0 chr4 45922128 45922152 -138366510 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1839 18 9 4 chr4 45922185 45922410 -138366252 - L1PA2 LINE L1 -2 6153 5928 1759 70 7 12 chr4 45922410 45922678 -138365984 + L1HS LINE L1 5744 5942 -213 319 226 0 0 chr4 45923201 45923263 -138365399 + MER116 DNA Mariner 18 79 -1 207 290 80 80 chr4 45923789 45923989 -138364673 - L2 LINE L2 -219 3053 2854 277 294 72 57 chr4 45925050 45925244 -138363418 - L2 LINE L2 -10 3303 3107 49 52 0 0 chr4 45926222 45926299 -138362363 + AT_rich Low_complexity Low_complexity 1 77 0 1873 223 49 25 chr4 45927091 45927580 -138361082 + MLT1D LTR MaLR 5 505 0 180 316 154 17 chr4 45927593 45927710 -138360952 - MIR SINE MIR -46 216 84 576 300 40 18 chr4 45928007 45928230 -138360432 - L2 LINE L2 0 3313 3086 359 285 34 106 chr4 45928382 45928589 -138360073 - L2 LINE L2 -225 3088 2897 22 35 0 0 chr4 45928616 45928645 -138360017 + AT_rich Low_complexity Low_complexity 1 29 0 1653 217 16 27 chr4 45928776 45929145 -138359517 - MLT1A1 LTR MaLR 0 365 1 1051 282 11 57 chr4 45929796 45930292 -138358370 - L1PA13 LINE L1 -4973 2601 2182 372 343 29 69 chr4 45930957 45931132 -138357530 - L1M2 LINE L1 -5902 947 780 1204 351 19 19 chr4 45931143 45931729 -138356933 - L1PA13 LINE L1 -6200 1374 789 260 161 36 0 chr4 45932328 45932384 -138356278 + (TATATG)n Simple_repeat Simple_repeat 3 60 0 2014 153 100 8 chr4 45932411 45932802 -138355860 + MSTA LTR MaLR 1 427 -1 185 304 0 0 chr4 45934145 45934191 -138354471 + L2 LINE L2 2927 2972 -341 618 228 89 33 chr4 45934778 45934958 -138353704 - MIR SINE MIR -33 229 40 203 324 102 37 chr4 45934978 45935086 -138353576 + L2 LINE L2 3184 3298 -15 333 314 100 14 chr4 45935370 45935510 -138353152 + MIR3 SINE MIR 32 183 -25 277 136 23 0 chr4 45935574 45935618 -138353044 - L2 LINE L2 -2 3311 3267 41 72 0 0 chr4 45936413 45936496 -138352166 + AT_rich Low_complexity Low_complexity 1 83 0 556 270 27 7 chr4 45937184 45937332 -138351330 + MIR SINE MIR 1 151 -111 689 261 60 5 chr4 45937336 45937535 -138351127 - MIR SINE MIR -2 260 51 247 274 0 0 chr4 45939005 45939056 -138349606 + MIR SINE MIR 27 77 -185 1950 244 98 37 chr4 45939056 45939737 -138348925 - MER50 LTR ERV1 0 734 12 325 229 0 190 chr4 45939758 45939809 -138348853 + MIR SINE MIR 92 151 -111 883 83 0 0 chr4 45939809 45939929 -138348733 + L1MA2 LINE L1 6184 6303 -1 325 229 0 190 chr4 45939929 45940056 -138348606 + MIR SINE MIR 151 236 -26 43970 42 2 0 chr4 45940279 45946417 -138342245 + L1PA4 LINE L1 3 6152 -3 217 353 8 68 chr4 45946434 45946567 -138342095 - L2 LINE L2 -7 3306 3182 686 34 0 0 chr4 45946971 45947059 -138341603 - L1M1 LINE L1 -4839 2726 2639 682 207 215 21 chr4 45947119 45947356 -138341306 - L1MC4 LINE L1 -188 7854 7572 1144 212 69 101 chr4 45947366 45947743 -138340919 + MLT1B LTR MaLR 11 375 -15 246 111 0 0 chr4 45947762 45947798 -138340864 - L1MC4 LINE L1 -466 7576 7541 464 296 31 6 chr4 45947840 45948002 -138340660 - L2 LINE L2 -680 2634 2469 245 289 226 26 chr4 45948203 45948393 -138340269 - MARNA DNA Mariner -222 364 137 13624 134 38 38 chr4 45948916 45949970 -138338692 + Tigger1 DNA MER2_type 1 1054 -1364 801 85 93 16 chr4 45949970 45950099 -138338563 + MER85 DNA T2_type 1 139 0 13624 134 38 38 chr4 45950099 45951464 -138337198 + Tigger1 DNA MER2_type 1054 2418 0 306 291 48 10 chr4 45951473 45951576 -138337086 - L2 LINE L2 -42 3271 3165 27 62 0 0 chr4 45951581 45951629 -138337033 + AT_rich Low_complexity Low_complexity 1 48 0 23 33 0 0 chr4 45953257 45953287 -138335375 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr4 45953489 45953513 -138335149 + AT_rich Low_complexity Low_complexity 1 24 0 2084 119 0 3 chr4 45954667 45954960 -138333702 - AluSx SINE Alu -20 292 1 335 209 38 38 chr4 45955559 45955664 -138332998 + L1MA4 LINE L1 5981 6085 -215 761 296 111 33 chr4 45955845 45956243 -138332419 + MLT1J2 LTR MaLR 3 431 -19 16124 195 89 101 chr4 45958618 45959380 -138329282 - L1PA16 LINE L1 -9 6860 6091 2437 50 26 0 chr4 45959380 45959683 -138328979 - AluY SINE Alu 0 311 1 16124 195 89 101 chr4 45959683 45960980 -138327682 - L1PA16 LINE L1 -778 6091 4780 2444 153 98 14 chr4 45960980 45961419 -138327243 + MER61D LTR ERV1 26 501 0 16124 195 89 101 chr4 45961419 45965850 -138322812 - L1PA16 LINE L1 -2089 4780 5 355 222 19 49 chr4 45966140 45966302 -138322360 - MER113 DNA MER1_type? -282 239 83 553 220 160 64 chr4 45966585 45966898 -138321764 - MER52A LTR ERV1 -2 1230 292 315 98 0 0 chr4 45966982 45967023 -138321639 - LTR3b LTR ERVK 0 500 460 3408 121 16 2 chr4 45967024 45967513 -138321149 - LTR3b LTR ERVK -4 496 1 243 88 0 0 chr4 45968566 45968600 -138320062 + (CA)n Simple_repeat Simple_repeat 1 34 0 482 279 75 12 chr4 45969854 45970015 -138318647 - MIR SINE MIR -2 260 90 1580 180 24 14 chr4 45970423 45970717 -138317945 - AluJo SINE Alu -15 297 1 206 265 44 29 chr4 45971874 45971942 -138316720 - L2 LINE L2 -1 3271 3203 21 0 0 0 chr4 45972210 45972231 -138316431 + AT_rich Low_complexity Low_complexity 1 21 0 378 93 0 0 chr4 45972294 45972348 -138316314 - MLT2B1 LTR ERVL 0 520 467 230 120 120 0 chr4 45972385 45972435 -138316227 - MLT2B1 LTR ERVL -45 475 420 367 127 42 0 chr4 45972449 45972567 -138316095 + (TA)n Simple_repeat Simple_repeat 1 123 0 231 88 0 0 chr4 45972567 45972601 -138316061 + (TTA)n Simple_repeat Simple_repeat 2 35 0 2555 179 25 5 chr4 45972605 45973052 -138315610 - MLT2B1 LTR ERVL -64 456 1 228 35 0 0 chr4 45973508 45973537 -138315125 + (TG)n Simple_repeat Simple_repeat 1 29 0 456 270 49 54 chr4 45973586 45973790 -138314872 - MLT1K LTR MaLR -1 587 385 854 248 87 6 chr4 45974677 45975000 -138313662 - L1MC4 LINE L1 -160 7882 7534 227 204 136 19 chr4 45975024 45975127 -138313535 - L1MC4a LINE L1 -558 7250 7136 2912 61 70 70 chr4 45975917 45976317 -138312345 + MLT2A1 LTR ERVL 1 403 -41 387 0 0 0 chr4 45976317 45976360 -138312302 + (CA)n Simple_repeat Simple_repeat 2 44 0 2912 61 70 70 chr4 45976360 45976403 -138312259 + MLT2A1 LTR ERVL 402 444 0 237 305 152 0 chr4 45977065 45977170 -138311492 + L2 LINE L2 3177 3297 -16 10030 23 0 0 chr4 45977320 45978494 -138310168 - L1PA2 LINE L1 -1260 4886 3713 7874 14 0 0 chr4 45978494 45979779 -138308883 + L1PA2 LINE L1 4871 6155 0 387 258 61 30 chr4 45981139 45981271 -138307391 - MER20 DNA MER1_type -23 196 61 2159 138 119 13 chr4 46081913 46082298 -138206364 + MSTA LTR MaLR 3 428 0 8249 161 19 34 chr4 46082300 46083901 -138204761 + MSTA-int LTR MaLR 3 1580 0 1880 157 121 21 chr4 46083901 46084290 -138204372 + MSTA LTR MaLR 1 428 0 3132 191 90 104 chr4 46084782 46085383 -138203279 - L1MC3 LINE L1 -1 7784 7125 249 282 0 13 chr4 46085383 46085461 -138203201 - MLT1F1 LTR MaLR -443 124 48 3132 191 90 104 chr4 46085461 46085847 -138202815 - L1MC3 LINE L1 -660 7125 6735 1880 173 116 10 chr4 46086398 46086785 -138201877 - MSTA LTR MaLR 0 428 1 2317 197 30 6 chr4 46087178 46087686 -138200976 - L1MB7 LINE L1 -15 6169 5650 453 97 42 0 chr4 46088167 46088239 -138200423 - L1P4 LINE L1 -683 5483 5409 * 1657 181 13 3 chr4 46088234 46088538 -138200124 + L1PA16 LINE L1 5756 6062 -104 391 254 18 0 chr4 46089241 46089351 -138199311 - MER94 DNA DNA -19 115 4 27 49 0 0 chr4 46089368 46089409 -138199253 + AT_rich Low_complexity Low_complexity 1 41 0 351 0 0 0 chr4 46089458 46089497 -138199165 + (CA)n Simple_repeat Simple_repeat 2 40 0 2826 164 3 23 chr4 46090000 46090875 -138197787 + L1PA15 LINE L1 4795 5651 -514 2142 159 43 22 chr4 46090875 46091291 -138197371 - MSTB LTR MaLR 0 426 2 5236 192 11 12 chr4 46091303 46092267 -138196395 - MSTB-int LTR MaLR -10 1641 679 2513 112 19 11 chr4 46092272 46092639 -138196023 + THE1C LTR MaLR 6 375 0 3503 193 18 5 chr4 46092640 46093313 -138195349 - MSTB-int LTR MaLR -969 682 1 2179 172 62 2 chr4 46093313 46093715 -138194947 - MSTB LTR MaLR 0 426 1 3148 137 4 0 chr4 46093721 46094224 -138194438 + L1PA15 LINE L1 5654 6158 -7 219 188 0 129 chr4 46094666 46094751 -138193911 + MIR SINE MIR 178 251 -11 22 99 0 0 chr4 46096441 46096512 -138192150 + AT_rich Low_complexity Low_complexity 1 71 0 307 294 145 56 chr4 46096966 46097180 -138191482 - MIR SINE MIR -17 245 13 283 29 0 0 chr4 46097247 46097282 -138191380 - MADE1 DNA Mariner 0 80 46 504 149 0 0 chr4 46097502 46097589 -138191073 + L1MA3 LINE L1 6218 6304 -1 966 197 71 4 chr4 46098201 46098455 -138190207 - Charlie5 DNA MER1_type 0 2624 2354 266 286 127 0 chr4 46098476 46098602 -138190060 - Charlie5 DNA MER1_type -2451 161 20 1848 232 120 17 chr4 46098864 46099329 -138189333 + MLT2B1 LTR ERVL 8 520 0 1141 92 12 0 chr4 46100761 46100934 -138187728 + (GAAA)n Simple_repeat Simple_repeat 2 176 0 501 295 20 0 chr4 46101085 46101234 -138187428 - MIR SINE MIR 0 262 111 545 291 24 0 chr4 46101238 46101403 -138187259 - MLT1H LTR MaLR 0 549 381 973 218 94 34 chr4 46101445 46101711 -138186951 - MLT1H LTR MaLR -252 297 16 1269 135 0 5 chr4 46101914 46102107 -138186555 - AluY SINE Alu 0 311 120 291 205 74 49 chr4 46103473 46103595 -138185067 - MIR SINE MIR -54 208 84 203 345 0 12 chr4 46103616 46103700 -138184962 + L2 LINE L2 2404 2486 -828 1353 255 60 58 chr4 46103726 46104260 -138184402 - L1MC5 LINE L1 -810 7151 6617 180 341 187 0 chr4 46104301 46104392 -138184270 - MIR SINE MIR -124 138 31 183 325 140 44 chr4 46105168 46105282 -138183380 - L2 LINE L2 -2 3270 3146 3641 145 72 13 chr4 46105446 46106116 -138182546 - L1PA16 LINE L1 -95 6071 5363 1072 193 0 5 chr4 46106114 46106332 -138182330 - L1 LINE L1 -2177 3969 3753 * 987 211 21 16 chr4 46106342 46106584 -138182078 - AluJb SINE Alu -4 308 66 5726 256 25 11 chr4 46106585 46108782 -138179880 - L1PA15-16 LINE L1 -2612 4237 2014 777 172 13 0 chr4 46108776 46108927 -138179735 - L1M4 LINE L1 -2200 3946 3794 * 2153 89 3 0 chr4 46110266 46110575 -138178087 - AluY SINE Alu 0 310 1 2026 129 6 10 chr4 46110658 46110969 -138177693 - AluSg SINE Alu 0 310 1 539 271 59 0 chr4 46111235 46111353 -138177309 + L2 LINE L2 3185 3309 -4 270 354 75 12 chr4 46111633 46111873 -138176789 + MLT1J LTR MaLR 257 511 0 229 176 44 73 chr4 46112686 46112754 -138175908 + Tigger5 DNA MER2_type 293 358 -1965 250 260 73 100 chr4 46112992 46113142 -138175520 - MIR SINE MIR -69 193 48 258 32 0 0 chr4 46113277 46113308 -138175354 + (TAGA)n Simple_repeat Simple_repeat 1 31 0 499 281 30 40 chr4 46113349 46113548 -138175114 + L2 LINE L2 2549 2745 -569 367 222 68 0 chr4 46113551 46113668 -138174994 + MER53 DNA DNA 10 134 -55 387 0 0 0 chr4 46113707 46113750 -138174912 + (TA)n Simple_repeat Simple_repeat 2 44 0 261 194 0 16 chr4 46113756 46113818 -138174844 - MER53 DNA DNA -125 64 4 283 337 20 0 chr4 46113818 46113916 -138174746 + L2 LINE L2 2770 2869 -445 397 295 91 55 chr4 46113985 46114239 -138174423 + L2 LINE L2 3049 3311 -2 1603 173 182 6 chr4 46115266 46115607 -138173055 + MSTA LTR MaLR 28 428 0 279 0 0 0 chr4 46115972 46116003 -138172659 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 10115 68 6 5 chr4 46116126 46118264 -138170398 - L1PA6 LINE L1 0 6154 4016 25408 111 15 12 chr4 46118266 46122121 -138166541 - L1PA6 LINE L1 -2268 3878 11 374 299 62 21 chr4 46122217 46122361 -138166301 + MIR3 SINE MIR 31 180 -28 322 223 9 62 chr4 46122723 46122835 -138165827 - L1ME3A LINE L1 -219 5951 5846 803 270 26 20 chr4 46122873 46123140 -138165522 - L1PA8 LINE L1 -325 5847 5580 615 330 68 63 chr4 46123143 46124052 -138164610 - L1MEd LINE L1 -4762 1548 602 24 32 0 0 chr4 46124588 46124619 -138164043 + AT_rich Low_complexity Low_complexity 1 31 0 292 179 26 0 chr4 46125722 46125800 -138162862 + (TA)n Simple_repeat Simple_repeat 1 80 0 312 261 35 162 chr4 46125883 46126167 -138162495 + MER102a DNA MER1_type 73 320 -10 337 336 141 0 chr4 46128943 46129071 -138159591 - MIR SINE MIR -15 247 102 319 340 39 55 chr4 46129225 46129481 -138159181 + MLT1K LTR MaLR 199 450 -138 2107 144 125 8 chr4 46129733 46130116 -138158546 - MSTA LTR MaLR 0 428 1 233 263 0 18 chr4 46130913 46130970 -138157692 + CT-rich Low_complexity Low_complexity 6 61 0 357 283 62 0 chr4 46132637 46132750 -138155912 + MIR SINE MIR 7 126 -136 5843 202 39 12 chr4 46132977 46134223 -138154439 - L1MC3 LINE L1 -18 7767 6488 253 323 20 0 chr4 46134279 46134378 -138154284 - MIR SINE MIR -10 252 152 1423 186 106 13 chr4 46135302 46135613 -138153049 - MER4D LTR ERV1 -17 886 547 2114 29 0 0 chr4 46135614 46135859 -138152803 - L1P2 LINE L1 -475 5680 5436 272 57 0 0 chr4 46135852 46135887 -138152775 + L1HS LINE L1 5915 5949 -206 * 1303 31 0 0 chr4 46135887 46136046 -138152616 + L1PA4 LINE L1 5996 6154 -1 2297 183 45 28 chr4 46136079 46136608 -138152054 - MER4D LTR ERV1 -334 538 1 455 307 125 0 chr4 46136782 46136958 -138151704 - MIR SINE MIR -30 232 35 311 281 141 37 chr4 46137001 46137328 -138151334 - MLT1J1 LTR MaLR -18 428 68 1253 220 96 41 chr4 46137355 46137719 -138150943 + MLT1B LTR MaLR 1 384 -6 25 31 0 0 chr4 46137812 46137844 -138150818 + AT_rich Low_complexity Low_complexity 1 32 0 660 221 0 22 chr4 46137855 46137991 -138150671 + FLAM_A SINE Alu 1 133 0 2063 137 124 18 chr4 46138324 46138711 -138149951 + MSTA LTR MaLR 1 428 0 244 111 0 0 chr4 46139355 46139391 -138149271 - MLT2B1 LTR ERVL 0 520 485 240 254 169 16 chr4 46139448 46139637 -138149025 - L1MC5 LINE L1 -271 7690 7473 2623 182 34 48 chr4 46139641 46140201 -138148461 + MER21A LTR ERV1 378 929 -2 1741 221 45 94 chr4 46140204 46140613 -138148049 - L1MC5 LINE L1 -569 7392 6965 2094 102 0 20 chr4 46140613 46140906 -138147756 + AluSg SINE Alu 1 287 -23 1741 221 45 94 chr4 46140906 46141154 -138147508 - L1MC5 LINE L1 -996 6965 6771 4254 181 6 38 chr4 46141154 46141973 -138146689 - MER54B LTR ERVL 0 793 1 1741 221 45 94 chr4 46141973 46142160 -138146502 - L1MC5 LINE L1 -1190 6771 6576 1559 256 98 26 chr4 46142370 46143138 -138145524 - L1MEc LINE L1 -4907 1489 667 324 157 52 7 chr4 46143138 46143291 -138145371 + (TA)n Simple_repeat Simple_repeat 2 161 0 1721 288 34 26 chr4 46143300 46143921 -138144741 - L1MEc LINE L1 -5732 664 39 468 329 52 9 chr4 46144142 46144373 -138144289 + L1ME3A LINE L1 5638 5878 -292 2157 106 72 29 chr4 46144704 46145052 -138143610 - THE1B LTR MaLR 0 364 2 11076 113 4 4 chr4 46145053 46146631 -138142031 - THE1B-int LTR MaLR 0 1580 2 2095 137 57 20 chr4 46146632 46146983 -138141679 - THE1B LTR MaLR 0 364 1 22 80 0 0 chr4 46147627 46147677 -138140985 + AT_rich Low_complexity Low_complexity 1 50 0 474 330 101 25 chr4 46148395 46148671 -138139991 + MLT1J2 LTR MaLR 33 329 -121 504 143 0 0 chr4 46148739 46148816 -138139846 + MER101 LTR ERV1 1 77 -397 * 1114 181 10 0 chr4 46148812 46149017 -138139645 - MER101 LTR ERV1 -7 467 261 1993 177 71 3 chr4 46149023 46149391 -138139271 + MER101 LTR ERV1 82 474 0 410 326 58 0 chr4 46149513 46149651 -138139011 + MIR SINE MIR 28 173 -89 819 151 0 32 chr4 46153630 46153816 -138134846 + CT-rich Low_complexity Low_complexity 1 180 0 337 351 155 0 chr4 46153888 46154056 -138134606 + MIR SINE MIR 15 208 -54 2422 201 76 86 chr4 46154127 46154920 -138133742 - L1MD2 LINE L1 -11 6231 5447 21 36 0 0 chr4 46155015 46155043 -138133619 + AT_rich Low_complexity Low_complexity 1 28 0 505 326 113 67 chr4 46155154 46155828 -138132834 - L2 LINE L2 -340 2974 2270 258 32 0 0 chr4 46159126 46159157 -138129505 + (TG)n Simple_repeat Simple_repeat 2 32 0 341 149 15 0 chr4 46159206 46159273 -138129389 + (TA)n Simple_repeat Simple_repeat 1 68 0 345 270 175 8 chr4 46159879 46160005 -138128657 + MLT1J2 LTR MaLR 399 545 -4 392 337 74 55 chr4 46160222 46160626 -138128036 + L3 LINE CR1 423 834 -743 3016 30 0 3 chr4 46160666 46161028 -138127634 - L1P3 LINE L1 -470 5684 5324 1727 73 0 0 chr4 46161028 46161259 -138127403 + L1PA7 LINE L1 5920 6151 -3 21 0 0 0 chr4 46162972 46162993 -138125669 + AT_rich Low_complexity Low_complexity 1 21 0 473 276 79 114 chr4 46164228 46164425 -138124237 - MLT1J1 LTR MaLR -59 391 214 198 0 0 0 chr4 46164425 46164447 -138124215 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 473 276 79 114 chr4 46164447 46164654 -138124008 - MLT1J1 LTR MaLR -236 214 1 24 0 0 0 chr4 46164794 46164818 -138123844 + AT_rich Low_complexity Low_complexity 1 24 0 2286 114 0 0 chr4 46164869 46165176 -138123486 - AluSg SINE Alu -3 307 1 320 208 91 26 chr4 46165520 46165597 -138123065 + MIR3 SINE MIR 81 162 -46 323 295 83 26 chr4 46166931 46167087 -138121575 - MIR3 SINE MIR -7 201 37 1995 158 3 0 chr4 46167686 46167996 -138120666 + AluSx SINE Alu 1 311 -1 1053 241 134 6 chr4 46168459 46168779 -138119883 + Charlie2b DNA MER1_type 200 560 -2222 302 100 0 0 chr4 46168781 46168821 -138119841 + AluSg/x SINE Alu 194 233 -69 268 255 49 49 chr4 46168852 46168954 -138119708 + Charlie2b DNA MER1_type 569 670 -2112 747 284 58 14 chr4 46169040 46169385 -138119277 + Charlie2a DNA MER1_type 1485 1844 -1018 2602 183 4 26 chr4 46169419 46169961 -138118701 - L1MA10 LINE L1 -7 6327 5798 2062 231 55 69 chr4 46169963 46170586 -138118076 - MLT1E1 LTR MaLR -9 645 32 647 196 86 94 chr4 46170597 46170852 -138117810 + Charlie2a DNA MER1_type 1841 2093 -769 311 320 88 52 chr4 46170875 46171275 -138117387 + MLT1J LTR MaLR 30 443 -68 26 30 0 0 chr4 46171759 46171792 -138116870 + AT_rich Low_complexity Low_complexity 1 33 0 208 308 33 66 chr4 46173100 46173191 -138115471 + L2 LINE L2 3116 3203 -69 185 302 135 10 chr4 46173347 46173443 -138115219 - MIR SINE MIR -5 257 150 4367 194 73 2 chr4 46173443 46173597 -138115065 - L1MA10 LINE L1 -1 6333 6191 270 0 0 0 chr4 46173597 46173627 -138115035 + (TTA)n Simple_repeat Simple_repeat 1 30 0 4367 194 73 2 chr4 46173627 46173673 -138114989 - L1MA10 LINE L1 -143 6191 6150 3233 164 11 6 chr4 46173673 46174197 -138114465 - MER1A DNA MER1_type 0 527 1 4367 194 73 2 chr4 46174197 46174911 -138113751 - L1MA10 LINE L1 -184 6150 5353 400 282 65 0 chr4 46174924 46175048 -138113614 - MIR SINE MIR -119 143 12 1505 182 59 76 chr4 46176005 46176346 -138112316 + LTR32 LTR ERVL 15 349 -122 792 205 0 6 chr4 46176389 46176545 -138112117 + LTR32 LTR ERVL 317 471 0 1619 217 68 52 chr4 46176663 46177160 -138111502 - MLT1D LTR MaLR 0 505 1 3278 136 41 2 chr4 46177158 46177665 -138110997 - MER1A DNA MER1_type 0 527 1 10585 113 10 2 chr4 46177961 46180405 -138108257 - L1PA8 LINE L1 0 6487 4060 1249 159 0 0 chr4 46180407 46180602 -138108060 - AluSg/x SINE Alu -6 306 112 752 181 0 0 chr4 46180624 46180757 -138107905 - FLAM_C SINE Alu 0 133 1 6706 173 22 24 chr4 46180758 46184221 -138104441 - L1PA8 LINE L1 -2390 4071 3 201 260 20 0 chr4 46186381 46186431 -138102231 - L2 LINE L2 -7 3306 3256 1371 180 85 20 chr4 46186792 46187086 -138101576 + MER2 DNA MER2_type 33 345 0 3816 212 44 1 chr4 46187466 46188668 -138099994 + L1M3 LINE L1 4376 5635 -677 1842 235 18 3 chr4 46188668 46189055 -138099607 - MER70A LTR ERVL 0 472 80 752 178 0 7 chr4 46189059 46189194 -138099468 - FLAM_C SINE Alu -9 134 1 461 192 13 0 chr4 46189195 46189273 -138099389 - MER70A LTR ERVL -393 79 1 690 192 7 34 chr4 46189276 46189422 -138099240 + L1M3 LINE L1 5634 5775 -559 598 143 19 54 chr4 46189446 46189573 -138099089 - MSTB1 LTR MaLR 0 432 306 568 234 0 0 chr4 46189595 46189702 -138098960 - FLAM_A SINE Alu -20 122 16 234 0 0 0 chr4 46189819 46189845 -138098817 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 26 50 0 0 chr4 46190664 46190704 -138097958 + AT_rich Low_complexity Low_complexity 1 40 0 182 333 45 36 chr4 46191108 46191219 -138097443 + MIR SINE MIR 14 125 -137 2211 246 78 58 chr4 46191489 46192356 -138096306 - L1ME2 LINE L1 0 6164 5280 182 396 31 44 chr4 46193310 46193469 -138095193 - L2 LINE L2 -1 3271 3115 2217 154 19 47 chr4 46193932 46194360 -138094302 - Tigger2a DNA MER2_type 0 434 19 356 211 21 0 chr4 46196345 46196440 -138092222 + (CATATA)n Simple_repeat Simple_repeat 5 101 0 462 300 89 59 chr4 46196909 46197212 -138091450 - L2 LINE L2 0 3313 3002 628 192 0 13 chr4 46197436 46197592 -138091070 + CT-rich Low_complexity Low_complexity 4 157 0 423 320 31 0 chr4 46197635 46197763 -138090899 - L2 LINE L2 -1 3312 3181 309 327 235 7 chr4 46197994 46198147 -138090515 - MER5A DNA MER1_type 0 189 2 527 198 9 9 chr4 46198364 46198475 -138090187 - LTR52 LTR ERVL -273 148 38 2118 114 7 3 chr4 46198476 46198784 -138089878 + AluSg SINE Alu 1 309 -1 1887 98 4 0 chr4 46199114 46199369 -138089293 + AluY SINE Alu 56 311 0 598 25 25 0 chr4 46199745 46199825 -138088837 + (TCTA)n Simple_repeat Simple_repeat 1 82 0 21 0 0 0 chr4 46199968 46199989 -138088673 + AT_rich Low_complexity Low_complexity 1 21 0 242 28 0 28 chr4 46200759 46200795 -138087867 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 296 253 44 22 chr4 46200882 46200973 -138087689 - MIR SINE MIR -75 187 95 601 297 80 55 chr4 46200974 46201338 -138087324 - MLT1I LTR MaLR -1 408 36 234 370 37 0 chr4 46201373 46201454 -138087208 - MIR SINE MIR -166 96 13 43 20 0 0 chr4 46203438 46203488 -138085174 + AT_rich Low_complexity Low_complexity 1 50 0 258 301 30 38 chr4 46203809 46203942 -138084720 + MIR SINE MIR 81 212 -50 411 268 9 0 chr4 46204449 46204561 -138084101 - MIR SINE MIR -26 236 124 293 309 81 52 chr4 46204977 46205113 -138083549 + MIR SINE MIR 49 188 -74 21 36 0 0 chr4 46206652 46206680 -138081982 + AT_rich Low_complexity Low_complexity 1 28 0 297 164 36 0 chr4 46207148 46207203 -138081459 - MLT2C1 LTR ERVL 0 520 464 518 164 25 19 chr4 46207209 46207368 -138081294 + (TA)n Simple_repeat Simple_repeat 1 160 0 1500 180 97 3 chr4 46207410 46207721 -138080941 - MLT2C1 LTR ERVL -57 340 1 1759 157 0 33 chr4 46211021 46211326 -138077336 - AluSx SINE Alu -14 298 4 21 36 0 0 chr4 46212311 46212339 -138076323 + AT_rich Low_complexity Low_complexity 1 28 0 372 305 23 15 chr4 46213026 46213157 -138075505 + MLT1I LTR MaLR 81 212 -197 201 347 24 24 chr4 46213881 46214005 -138074657 + L2 LINE L2 2937 3060 -212 21 0 0 0 chr4 46214087 46214108 -138074554 + AT_rich Low_complexity Low_complexity 1 21 0 201 196 0 0 chr4 46214198 46214249 -138074413 + CT-rich Low_complexity Low_complexity 2 52 0 22 0 0 0 chr4 46214796 46214818 -138073844 + AT_rich Low_complexity Low_complexity 1 22 0 1874 132 7 4 chr4 46214887 46215202 -138073460 + AluY SINE Alu 6 321 0 295 218 53 117 chr4 46215445 46215674 -138072988 - L1ME LINE L1 -408 5754 5558 381 323 60 8 chr4 46215674 46215909 -138072753 - L1M4 LINE L1 -2596 3550 3304 225 0 0 0 chr4 46215935 46215960 -138072702 + (T)n Simple_repeat Simple_repeat 1 25 0 231 262 71 40 chr4 46215960 46216086 -138072576 - L1M4 LINE L1 -3774 2372 2243 249 158 53 105 chr4 46216958 46217034 -138071628 - L1M4 LINE L1 -552 5632 5561 247 338 67 9 chr4 46217037 46217247 -138071415 - L1M4 LINE L1 -2596 3550 3329 225 0 0 0 chr4 46217302 46217327 -138071335 + (T)n Simple_repeat Simple_repeat 1 25 0 369 206 71 40 chr4 46217327 46217453 -138071209 - L1M4 LINE L1 -3774 2372 2243 1069 72 93 0 chr4 46218000 46218139 -138070523 - AluSq/x SINE Alu -161 152 1 2544 181 216 82 chr4 46218150 46219050 -138069612 - LTR28 LTR ERV1 0 1020 1 2413 71 0 0 chr4 46219248 46219558 -138069104 + AluY SINE Alu 1 310 -1 183 304 72 0 chr4 46219751 46219820 -138068842 + MER5A DNA MER1_type 88 161 -28 * 193 243 7 7 chr4 46219765 46219821 -138068841 - MER5B DNA MER1_type -95 94 21 2125 176 0 7 chr4 46221532 46221935 -138066727 - L1P4 LINE L1 -845 5301 4902 1779 146 7 0 chr4 46221936 46222237 -138066425 + L1P4 LINE L1 5316 5618 -547 2085 132 30 28 chr4 46222237 46222600 -138066062 + THE1B LTR MaLR 1 364 0 5635 88 9 6 chr4 46222600 46223382 -138065280 + THE1B-int LTR MaLR 1 784 -796 325 309 114 13 chr4 46223700 46223849 -138064813 - L2 LINE L2 0 3313 3150 615 248 41 0 chr4 46224550 46224734 -138063928 + AluJb SINE Alu 132 321 0 192 363 41 29 chr4 46225507 46225678 -138062984 - L2 LINE L2 -1294 2020 1848 251 297 139 0 chr4 46226374 46226475 -138062187 + MIR3 SINE MIR 87 201 -7 186 265 0 20 chr4 46229044 46229093 -138059569 - L2 LINE L2 -5 3267 3220 22 0 0 0 chr4 46229695 46229717 -138058945 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr4 46229914 46229952 -138058710 + AT_rich Low_complexity Low_complexity 1 38 0 210 143 0 0 chr4 46230172 46230207 -138058455 + (T)n Simple_repeat Simple_repeat 1 35 0 624 232 192 10 chr4 46230875 46231073 -138057589 + MIR SINE MIR 3 236 -26 410 345 74 13 chr4 46231240 46231469 -138057193 + MIR SINE MIR 17 259 -3 26 64 0 0 chr4 46231598 46231645 -138057017 + AT_rich Low_complexity Low_complexity 1 47 0 2037 118 7 3 chr4 46231868 46232174 -138056488 - AluSp SINE Alu -6 307 1 46 68 0 0 chr4 46232258 46232346 -138056316 + AT_rich Low_complexity Low_complexity 1 88 0 23 78 0 0 chr4 46232489 46232540 -138056122 + AT_rich Low_complexity Low_complexity 1 51 0 564 262 184 20 chr4 46232593 46233044 -138055618 - L1ME3 LINE L1 -216 5946 5422 3638 237 28 42 chr4 46233101 46234907 -138053755 - L1MCb LINE L1 -4771 1793 3 26 50 0 0 chr4 46235037 46235077 -138053585 + AT_rich Low_complexity Low_complexity 1 40 0 22 94 0 0 chr4 46235094 46235158 -138053504 + AT_rich Low_complexity Low_complexity 1 64 0 222 356 19 29 chr4 46235827 46235931 -138052731 + MER5B DNA MER1_type 21 123 -55 186 318 37 65 chr4 46237699 46237715 -138050947 - MER5B DNA MER1_type -48 130 115 1535 202 40 48 chr4 46237715 46238111 -138050551 + MLT2C1 LTR ERVL 5 397 0 186 318 37 65 chr4 46238111 46238201 -138050461 - MER5B DNA MER1_type -63 115 27 28 29 0 0 chr4 46238363 46238398 -138050264 + AT_rich Low_complexity Low_complexity 1 35 0 1207 229 23 49 chr4 46238467 46238773 -138049889 - AluJb SINE Alu -14 298 1 1057 172 13 12 chr4 46238785 46239005 -138049657 + L1MB7 LINE L1 5710 5928 -256 790 161 0 7 chr4 46239005 46239148 -138049514 + L1MB7 LINE L1 6034 6175 -9 1057 172 13 12 chr4 46239148 46239172 -138049490 + L1MB7 LINE L1 5928 6175 -9 2498 172 106 18 chr4 46239193 46239886 -138048776 + L1MB2 LINE L1 4727 5525 -646 1634 174 19 32 chr4 46239886 46240202 -138048460 - AluJo SINE Alu 0 312 1 2498 172 106 18 chr4 46240202 46240494 -138048168 + L1MB2 LINE L1 5525 5790 -381 499 99 74 6 chr4 46240514 46240676 -138047986 + (TATAA)n Simple_repeat Simple_repeat 5 177 0 1485 184 59 6 chr4 46240681 46241001 -138047661 + L1MB2 LINE L1 5783 6119 -52 310 288 88 0 chr4 46241155 46241235 -138047427 - MIR SINE MIR -69 139 53 462 262 9 0 chr4 46241505 46241612 -138047050 - MER69 DNA AcHobo -2414 112 5 243 210 84 132 chr4 46242000 46242167 -138046495 + MIR SINE MIR 94 252 -10 234 250 83 56 chr4 46242403 46242547 -138046115 - L1MA9 LINE L1 -130 6182 6035 620 319 110 12 chr4 46244627 46244962 -138043700 - ERVL LTR ERVL -1236 4528 4161 734 350 78 43 chr4 46245486 46246164 -138042498 - ERVL LTR ERVL -2163 3491 2790 989 280 145 11 chr4 46246183 46246655 -138042007 + L1MC4a LINE L1 5312 5720 -2088 387 0 0 0 chr4 46246655 46246698 -138041964 + (TA)n Simple_repeat Simple_repeat 2 44 0 2166 108 0 3 chr4 46246700 46246995 -138041667 - AluY SINE Alu -17 294 1 989 280 145 11 chr4 46246995 46247051 -138041611 + L1MC4a LINE L1 5720 5914 -1894 9672 185 27 11 chr4 46247113 46249985 -138038677 - L1PB4 LINE L1 -1 6155 3242 2042 187 23 26 chr4 46250319 46250704 -138037958 + MLT2B3 LTR ERVL 1 384 -170 1317 297 153 30 chr4 46250705 46251445 -138037217 + L2 LINE L2 2045 2875 -439 387 266 7 77 chr4 46251484 46251627 -138037035 + MLT1H LTR MaLR 78 210 -339 5993 112 52 20 chr4 46251635 46254080 -138034582 + SVA Other Other 18 1385 -1 466 295 86 53 chr4 46254080 46254382 -138034280 + MLT1H LTR MaLR 209 520 -29 575 295 20 45 chr4 46254592 46254792 -138033870 + MLT1J2 LTR MaLR 3 197 -253 220 337 56 0 chr4 46254794 46254883 -138033779 + L2 LINE L2 3212 3305 -8 2165 219 105 48 chr4 46255028 46255639 -138033023 - MLT1E1 LTR MaLR -8 646 1 633 239 185 22 chr4 46255645 46255739 -138032923 + HAL1 LINE L1 1557 1634 -873 1141 232 78 99 chr4 46255739 46256313 -138032349 + MER68 LTR ERV1 1 562 0 633 239 185 22 chr4 46256313 46256494 -138032168 + HAL1 LINE L1 1634 1877 -630 232 125 83 0 chr4 46256616 46256712 -138031950 + (TATAA)n Simple_repeat Simple_repeat 1 104 0 45 69 0 0 chr4 46256731 46256818 -138031844 + AT_rich Low_complexity Low_complexity 1 87 0 975 127 17 0 chr4 46256849 46257022 -138031640 + (TA)n Simple_repeat Simple_repeat 2 177 0 354 85 0 0 chr4 46257022 46257069 -138031593 - Alu SINE Alu -9 291 245 237 341 11 11 chr4 46257073 46257161 -138031501 - MIR SINE MIR -15 247 160 21 36 0 0 chr4 46259473 46259501 -138029161 + AT_rich Low_complexity Low_complexity 1 28 0 23 68 0 0 chr4 46260269 46260313 -138028349 + AT_rich Low_complexity Low_complexity 1 44 0 304 154 0 19 chr4 46260380 46260430 -138028232 + MLT1A1 LTR MaLR 1 49 -316 3997 174 58 33 chr4 46260430 46261472 -138027190 - MER11C LTR ERVK 0 1071 56 252 0 0 0 chr4 46261760 46261788 -138026874 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 627 348 68 65 chr4 46262456 46263449 -138025213 - HERVL LTR ERVL -1807 3847 2852 326 349 47 8 chr4 46263442 46263571 -138025091 - HERVL LTR ERVL -4102 1662 1529 * 197 286 15 135 chr4 46264319 46264388 -138024274 + L2 LINE L2 3180 3227 -86 1769 183 0 6 chr4 46264388 46264699 -138023963 - AluJb SINE Alu -3 309 1 197 286 15 135 chr4 46264699 46264762 -138023900 + L2 LINE L2 3227 3296 -17 28 0 0 0 chr4 46265512 46265540 -138023122 + AT_rich Low_complexity Low_complexity 1 28 0 292 342 92 0 chr4 46266339 46266459 -138022203 - L2 LINE L2 -4 3309 3179 565 288 217 21 chr4 46266583 46267003 -138021659 + LTR50 LTR ERVL 8 509 -286 341 347 50 57 chr4 46267254 46267554 -138021108 + L2 LINE L2 2233 2530 -784 678 258 14 70 chr4 46268197 46268410 -138020252 + MIR SINE MIR 40 240 -22 203 282 24 0 chr4 46268413 46268498 -138020164 + (TA)n Simple_repeat Simple_repeat 2 88 0 1041 300 53 45 chr4 46268507 46268679 -138019983 + L2 LINE L2 1927 2096 -1218 2206 139 5 39 chr4 46268679 46269067 -138019595 - THE1C LTR MaLR 0 375 1 1041 300 53 45 chr4 46269067 46269361 -138019301 + L2 LINE L2 2096 2397 -917 23 33 0 0 chr4 46269440 46269470 -138019192 + AT_rich Low_complexity Low_complexity 1 30 0 227 171 0 0 chr4 46269863 46269904 -138018758 + CT-rich Low_complexity Low_complexity 2 42 0 6283 104 0 23 chr4 46271594 46272691 -138015971 - L1PA3 LINE L1 -5 6150 5108 5283 37 1 0 chr4 46272691 46273337 -138015325 + L1PA3 LINE L1 4463 5109 -1037 283 307 20 10 chr4 46273829 46273930 -138014732 - MLT1I LTR MaLR -229 180 79 434 310 100 39 chr4 46275246 46275636 -138013026 + HAL1b LINE L1 322 735 -613 617 277 90 61 chr4 46275847 46276426 -138012236 + L1MC5 LINE L1 6476 6984 -824 1084 259 57 40 chr4 46276546 46276970 -138011692 + MLT1C LTR MaLR 37 467 0 21 0 0 0 chr4 46277136 46277157 -138011505 + AT_rich Low_complexity Low_complexity 1 21 0 5888 55 22 4 chr4 46278930 46279687 -138008975 + L1PA5 LINE L1 5384 6154 0 4187 226 16 35 chr4 46280142 46281558 -138007104 - L1MB3 LINE L1 0 6183 4798 1529 146 77 0 chr4 46281558 46281818 -138006844 - AluSx SINE Alu -12 300 21 4187 226 16 35 chr4 46281818 46281914 -138006748 - L1MB3 LINE L1 -1385 4798 4702 351 266 119 68 chr4 46281923 46282100 -138006562 + L1M4c LINE L1 1282 1467 -4917 284 250 88 38 chr4 46282102 46282262 -138006400 + L1M4c LINE L1 1635 1802 -4761 5216 209 31 17 chr4 46282351 46283655 -138005007 + L1M4c LINE L1 2603 3925 -2457 3975 180 30 25 chr4 46283639 46284963 -138003699 + L1MA1 LINE L1 4453 5847 -455 * 180 0 0 0 chr4 46284963 46284983 -138003679 + (TA)n Simple_repeat Simple_repeat 2 21 0 3975 180 30 25 chr4 46284983 46285442 -138003220 + L1MA1 LINE L1 5847 6302 0 581 262 63 4 chr4 46285438 46285709 -138002953 + L1ME1 LINE L1 2250 2536 -4027 * 756 238 12 0 chr4 46285709 46285873 -138002789 + L1 LINE L1 4742 4907 -1239 * 861 248 28 61 chr4 46285864 46286255 -138002407 + L1ME1 LINE L1 2477 2854 -3528 836 249 60 3 chr4 46286249 46286583 -138002079 + L1ME1 LINE L1 4607 4959 -1423 * 2535 240 39 40 chr4 46286632 46287402 -138001260 + L1ME1 LINE L1 5587 6355 -47 408 267 0 30 chr4 46287299 46287434 -138001228 + L1MA10 LINE L1 6416 6546 -24 * 213 196 0 0 chr4 46287442 46287488 -138001174 + GA-rich Low_complexity Low_complexity 3 48 0 2010 95 3 54 chr4 46287576 46287892 -138000770 + AluSq SINE Alu 1 300 -13 32 56 0 0 chr4 46288550 46288586 -138000076 + AT_rich Low_complexity Low_complexity 1 36 0 978 86 22 0 chr4 46288588 46288727 -137999935 - AluYa5 SINE Alu -30 281 140 2094 102 16 3 chr4 46289535 46289840 -137998822 - AluY SINE Alu 0 311 3 597 277 179 28 chr4 46290458 46290826 -137997836 - MLT1G LTR MaLR 0 590 114 377 253 99 50 chr4 46290902 46291123 -137997539 + MLT1J1 LTR MaLR 73 304 -142 27 62 0 0 chr4 46291418 46291466 -137997196 + AT_rich Low_complexity Low_complexity 1 48 0 28 0 0 0 chr4 46291665 46291693 -137996969 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 46292341 46292369 -137996293 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr4 46293300 46293332 -137995330 + AT_rich Low_complexity Low_complexity 1 32 0 311 307 13 13 chr4 46293332 46293484 -137995178 + MIR SINE MIR 45 196 -64 26 50 0 0 chr4 46294069 46294109 -137994553 + AT_rich Low_complexity Low_complexity 1 40 0 350 314 157 0 chr4 46294177 46294381 -137994281 - MIR SINE MIR -14 248 13 393 179 15 0 chr4 46294451 46294518 -137994144 + MER2 DNA MER2_type 1 68 -277 210 71 0 0 chr4 46294946 46294974 -137993688 + (T)n Simple_repeat Simple_repeat 1 28 0 249 136 0 85 chr4 46295966 46296025 -137992637 + MLT1D LTR MaLR 54 107 -519 328 179 0 0 chr4 46296064 46296120 -137992542 + MLT1D LTR MaLR 111 166 -460 518 244 9 0 chr4 46296127 46296242 -137992420 - FRAM SINE Alu -16 160 45 927 210 45 106 chr4 46296243 46296600 -137992062 + MLT1D LTR MaLR 169 503 -2 209 256 0 0 chr4 46296605 46296648 -137992014 + L2 LINE L2 3178 3220 -52 7031 182 41 65 chr4 46296900 46298588 -137990074 - MER52A LTR ERV1 0 1755 1 25 31 0 0 chr4 46299728 46299760 -137988902 + AT_rich Low_complexity Low_complexity 1 32 0 16892 201 37 16 chr4 46300554 46301613 -137987049 - L1PA13 LINE L1 -1 6813 5777 2913 100 23 11 chr4 46301613 46301997 -137986665 + MLT2A1 LTR ERVL 1 379 -65 459 0 0 0 chr4 46301997 46302048 -137986614 + (TA)n Simple_repeat Simple_repeat 2 52 0 204 40 0 0 chr4 46302052 46302077 -137986585 + (CA)n Simple_repeat Simple_repeat 2 26 0 2913 100 23 11 chr4 46302077 46302126 -137986536 + MLT2A1 LTR ERVL 381 444 0 16892 201 37 16 chr4 46302126 46306975 -137981687 - L1PA13 LINE L1 -1037 5777 774 1104 218 75 70 chr4 46306975 46307511 -137981151 - LTR25 LTR ERV1 -189 605 29 1034 252 5 0 chr4 46308149 46308371 -137980291 - MER58A DNA MER1_type 0 224 2 22 0 0 0 chr4 46308676 46308698 -137979964 + AT_rich Low_complexity Low_complexity 1 22 0 264 363 62 0 chr4 46308845 46308991 -137979671 - L2 LINE L2 -1192 2122 1968 188 246 98 0 chr4 46309030 46309091 -137979571 + L2 LINE L2 2775 2841 -473 21 0 0 0 chr4 46310474 46310495 -137978167 + AT_rich Low_complexity Low_complexity 1 21 0 561 229 78 39 chr4 46310514 46310673 -137977989 - L1MDa LINE L1 -2154 4386 4216 1149 220 163 3 chr4 46310673 46310973 -137977689 + MER7A DNA MER2_type 1 346 0 561 229 78 39 chr4 46310973 46311018 -137977644 - L1MDa LINE L1 -2324 4216 4174 658 289 120 11 chr4 46311020 46311553 -137977109 - L1MDa LINE L1 -2534 4006 3416 * 3492 235 51 30 chr4 46311546 46313124 -137975538 - L1MDa LINE L1 -3458 3082 1470 730 168 8 0 chr4 46313131 46313256 -137975406 + MSTA LTR MaLR 1 126 -302 1334 133 44 5 chr4 46313295 46313498 -137975164 + MER30 DNA MER1_type 20 230 0 * 1810 164 30 3 chr4 46313498 46313801 -137974861 + MSTA LTR MaLR 118 428 0 270 0 0 0 chr4 46313812 46313842 -137974820 + (TG)n Simple_repeat Simple_repeat 2 31 0 1183 198 118 3 chr4 46313846 46314185 -137974477 - L1MDa LINE L1 -5086 1454 1077 335 330 39 18 chr4 46314306 46314591 -137974071 + L1MEc LINE L1 1739 2029 -4367 273 262 40 60 chr4 46314589 46314837 -137973825 - L1MDa LINE L1 -3613 2927 2685 * 2936 199 20 5 chr4 46314913 46315647 -137973015 + L1P4 LINE L1 4697 5442 -724 1795 304 59 12 chr4 46315741 46316401 -137972261 - L1MDa LINE L1 -5460 1080 72 244 333 32 11 chr4 46316850 46316943 -137971719 + MIR SINE MIR 58 152 -110 370 318 45 11 chr4 46316961 46316992 -137971670 - L1M4 LINE L1 -2665 3481 3453 7343 29 3 0 chr4 46316992 46318376 -137970286 - L1PA4 LINE L1 -2 6153 4758 370 318 45 11 chr4 46318376 46318523 -137970139 - L1M4 LINE L1 -2693 3453 3297 308 336 0 0 chr4 46318874 46318987 -137969675 + L1 LINE L1 4596 4708 -1438 336 341 42 6 chr4 46319104 46319271 -137969391 + L1 LINE L1 4882 5054 -1092 404 283 131 30 chr4 46319639 46319876 -137968786 - L2 LINE L2 -755 2559 2299 233 272 0 0 chr4 46320251 46320332 -137968330 + L1MEc LINE L1 1020 1100 -5296 243 273 72 0 chr4 46320554 46320668 -137967994 + L1MEc LINE L1 1155 1279 -4834 374 272 90 107 chr4 46320684 46321085 -137967577 + L1MEc LINE L1 1414 1807 -4408 2827 242 41 25 chr4 46321133 46322214 -137966448 - L1MC/D LINE L1 -743 5403 4352 427 285 80 93 chr4 46322338 46322640 -137966022 + L2 LINE L2 3014 3311 -2 1667 254 66 17 chr4 46322788 46323260 -137965402 + MLT1D LTR MaLR 3 497 -8 317 303 56 0 chr4 46323327 46323416 -137965246 - LTR16C LTR ERVL -201 290 197 4398 242 122 16 chr4 46323490 46323761 -137964901 + L1MA9 LINE L1 7 248 -6920 2385 76 0 0 chr4 46323761 46324064 -137964598 + AluY SINE Alu 1 303 -8 4398 242 122 16 chr4 46324064 46324935 -137963727 + L1MA9 LINE L1 248 1270 -5898 1110 267 16 6 chr4 46324939 46325261 -137963401 + L1MA9 LINE L1 3170 3494 -3673 2275 237 5 99 chr4 46325269 46325331 -137963331 + L1MA9 LINE L1 5376 5442 -1725 1985 159 0 0 chr4 46325331 46325627 -137963035 + AluSx SINE Alu 1 296 -16 2275 237 5 99 chr4 46325627 46326348 -137962314 + L1MA9 LINE L1 5442 6085 -1082 672 226 5 25 chr4 46326367 46326551 -137962111 + L1P LINE L1 2352 2533 -3613 1580 199 3 3 chr4 46326551 46326838 -137961824 + AluJo SINE Alu 12 298 -14 3611 208 25 61 chr4 46326838 46327825 -137960837 + L1MA9 LINE L1 6344 7295 -38 805 281 34 34 chr4 46328678 46329002 -137959660 + L2 LINE L2 2455 2778 -536 401 304 77 17 chr4 46329002 46329183 -137959479 - MIR SINE MIR -34 228 37 219 114 0 0 chr4 46329446 46329481 -137959181 + (TC)n Simple_repeat Simple_repeat 2 36 0 235 277 119 30 chr4 46330065 46330166 -137958496 - L2 LINE L2 -1 3312 3203 251 298 0 24 chr4 46330210 46330294 -137958368 + GA-rich Low_complexity Low_complexity 3 84 0 223 295 143 38 chr4 46330733 46330838 -137957824 - MIR3 SINE MIR -4 204 89 29 94 0 0 chr4 46332365 46332450 -137956212 + AT_rich Low_complexity Low_complexity 1 85 0 354 310 65 65 chr4 46332923 46333168 -137955494 + MLT1I LTR MaLR 6 250 -159 1010 279 20 59 chr4 46333246 46333752 -137954910 - L1ME1 LINE L1 -24 6142 5657 1835 191 34 33 chr4 46333752 46334290 -137954372 - MLT2A2 LTR ERVL -12 542 1 1364 211 65 45 chr4 46334297 46334945 -137953717 - L1ME1 LINE L1 -525 5641 4993 306 250 0 0 chr4 46334983 46335063 -137953599 - L1MA10 LINE L1 -1 6333 6254 878 289 79 26 chr4 46335099 46335203 -137953459 - L1ME1 LINE L1 -1198 4948 4851 566 244 9 0 chr4 46335203 46335318 -137953344 + FLAM_A SINE Alu 1 116 -17 878 289 79 26 chr4 46335318 46335680 -137952982 - L1ME1 LINE L1 -1295 4851 4457 371 230 58 54 chr4 46335705 46335887 -137952775 - L1ME1 LINE L1 -1982 4164 3979 25 83 0 0 chr4 46335890 46335950 -137952712 + AT_rich Low_complexity Low_complexity 1 60 0 2131 187 41 0 chr4 46338410 46338822 -137949840 + MSTB1 LTR MaLR 2 430 -2 519 95 0 0 chr4 46339265 46339339 -137949323 + (TG)n Simple_repeat Simple_repeat 1 74 0 1817 167 3 0 chr4 46339808 46340107 -137948555 - AluSx SINE Alu -12 300 1 720 216 36 21 chr4 46340112 46340306 -137948356 - L1ME1 LINE L1 -2263 3883 3687 2622 176 13 40 chr4 46340353 46340882 -137947780 - MLT2B1 LTR ERVL -5 515 1 550 275 11 0 chr4 46340882 46341071 -137947591 - L1ME1 LINE L1 -2531 3615 3425 22 94 0 0 chr4 46341756 46341820 -137946842 + AT_rich Low_complexity Low_complexity 1 64 0 884 199 13 55 chr4 46342324 46342560 -137946102 + MER31B LTR ERV1 1 226 -240 1228 174 25 16 chr4 46342676 46342918 -137945744 + MER31B LTR ERV1 223 466 0 181 250 0 0 chr4 46343376 46343412 -137945250 - L2 LINE L2 -69 3203 3168 749 312 123 11 chr4 46343528 46343967 -137944695 - L2 LINE L2 -841 2473 1986 1098 139 14 43 chr4 46343967 46344176 -137944486 - L1MA8 LINE L1 -137 6154 5952 570 175 9 9 chr4 46344175 46344289 -137944373 + L1MA8 LINE L1 6160 6273 -18 * 1025 301 71 52 chr4 46344302 46344824 -137943838 - L2 LINE L2 -1296 2018 1487 2062 129 0 0 chr4 46344846 46345140 -137943522 - AluSx SINE Alu -18 294 1 1604 233 76 52 chr4 46345269 46345806 -137942856 - MLT2B3 LTR ERVL -4 550 1 250 341 39 31 chr4 46346379 46346508 -137942154 - MER91B DNA MER1_type -58 132 3 1458 225 51 34 chr4 46347062 46347529 -137941133 + MLT1D LTR MaLR 1 475 -30 234 91 0 0 chr4 46347771 46347804 -137940858 + (T)n Simple_repeat Simple_repeat 1 33 0 253 185 12 12 chr4 46347903 46347984 -137940678 + (TGAA)n Simple_repeat Simple_repeat 1 81 0 23 54 0 0 chr4 46348208 46348245 -137940417 + AT_rich Low_complexity Low_complexity 1 37 0 1085 122 6 0 chr4 46348443 46348599 -137940063 - AluYa5 SINE Alu -24 287 131 1332 193 117 9 chr4 46348827 46349153 -137939509 - MER46B DNA MER2_type 0 236 1 2611 48 0 3 chr4 46352314 46352624 -137936038 - AluY SINE Alu -2 309 1 21 0 0 0 chr4 46352626 46352647 -137936015 + AT_rich Low_complexity Low_complexity 1 21 0 22 80 0 0 chr4 46353291 46353341 -137935321 + AT_rich Low_complexity Low_complexity 1 50 0 288 169 39 0 chr4 46353500 46353577 -137935085 + (TA)n Simple_repeat Simple_repeat 1 80 0 24 32 0 0 chr4 46354660 46354691 -137933971 + AT_rich Low_complexity Low_complexity 1 31 0 394 209 35 0 chr4 46355358 46355473 -137933189 - MER96B DNA MER1_type? -58 359 241 1286 191 35 51 chr4 46355577 46355892 -137932770 - AluJo SINE Alu 0 312 3 1835 179 121 67 chr4 46356074 46356177 -137932485 - L1MA9 LINE L1 -38 6274 6178 180 77 0 0 chr4 46356177 46356203 -137932459 + (TG)n Simple_repeat Simple_repeat 1 26 0 1835 179 121 67 chr4 46356203 46356685 -137931977 - L1MA9 LINE L1 -134 6178 5657 1000 150 0 0 chr4 46356689 46356849 -137931813 + L1MA9 LINE L1 5505 5664 -648 23 0 0 0 chr4 46356975 46356998 -137931664 + AT_rich Low_complexity Low_complexity 1 23 0 31 44 0 0 chr4 46357311 46357356 -137931306 + AT_rich Low_complexity Low_complexity 1 45 0 225 281 0 16 chr4 46357876 46357940 -137930722 + MER117 DNA MER1_type 5 67 -130 342 337 84 12 chr4 46359356 46359522 -137929140 - LTR33 LTR ERVL -343 178 1 327 326 36 22 chr4 46360199 46360337 -137928325 - MIR SINE MIR -98 164 25 6344 83 8 3 chr4 46361710 46362777 -137925885 + L1PA8A LINE L1 5056 6127 -4 879 283 30 0 chr4 46362872 46363102 -137925560 + MIR SINE MIR 3 239 -23 903 282 163 20 chr4 46364007 46364506 -137924156 - MLT1F1 LTR MaLR 0 567 1 25 51 0 0 chr4 46364556 46364595 -137924067 + AT_rich Low_complexity Low_complexity 1 39 0 673 318 211 18 chr4 46365460 46365851 -137922811 - L2 LINE L2 -865 2449 2135 339 113 0 0 chr4 46365851 46365904 -137922758 + (CA)n Simple_repeat Simple_repeat 2 54 0 673 318 211 18 chr4 46365904 46366066 -137922596 - L2 LINE L2 -1179 2135 1789 533 313 41 38 chr4 46366206 46366340 -137922322 + L1M4 LINE L1 3146 3278 -2868 768 201 7 0 chr4 46366340 46366479 -137922183 + L1PB4 LINE L1 6004 6143 -13 533 313 41 38 chr4 46366479 46366767 -137921895 + L1M4 LINE L1 3278 3565 -2581 1091 220 20 24 chr4 46367013 46367268 -137921394 + MER119 DNA MER1_type 85 338 -245 238 147 0 0 chr4 46368247 46368281 -137920381 - MER3 DNA MER1_type -175 34 1 225 347 48 0 chr4 46368918 46369065 -137919597 + L1P1 LINE L1 5381 5534 -621 21 0 0 0 chr4 46369244 46369265 -137919397 + AT_rich Low_complexity Low_complexity 1 21 0 399 305 109 23 chr4 46369920 46370619 -137918043 + L1MC/D LINE L1 2418 3176 -2970 300 296 48 38 chr4 46370633 46370947 -137917715 + L1MC/D LINE L1 4103 4419 -1727 1075 260 183 46 chr4 46370947 46371467 -137917195 - MLT1E2 LTR MaLR -3 623 33 2033 127 140 11 chr4 46371793 46372171 -137916491 + MSTA LTR MaLR 2 428 0 5054 177 27 4 chr4 46372172 46373083 -137915579 + MSTA-int LTR MaLR 2 933 -718 1797 180 39 17 chr4 46373083 46373439 -137915223 + THE1C LTR MaLR 1 364 -11 9329 148 11 35 chr4 46373450 46375060 -137913602 + THE1C-int LTR MaLR 1 1571 -9 1370 146 158 82 chr4 46375069 46375399 -137913263 + THE1C LTR MaLR 1 375 0 4323 154 17 10 chr4 46375399 46376114 -137912548 + MSTA-int LTR MaLR 861 1580 0 1637 169 148 13 chr4 46376117 46376490 -137912172 + MSTA LTR MaLR 4 426 -2 354 331 115 32 chr4 46376538 46377034 -137911628 + L1MC/D LINE L1 4845 5381 -765 360 0 0 0 chr4 46377356 46377396 -137911266 + (TG)n Simple_repeat Simple_repeat 2 41 0 232 242 30 30 chr4 46377501 46377567 -137911095 + L1MC/D LINE L1 5467 5532 -2276 281 259 198 49 chr4 46377589 46377751 -137910911 - LTR16A LTR ERVL 0 450 265 217 333 37 44 chr4 46378629 46378764 -137909898 - MIR SINE MIR -89 173 40 1046 217 23 101 chr4 46379119 46379515 -137909147 - MLT1A1 LTR MaLR 0 365 1 958 76 0 0 chr4 46379578 46379696 -137908966 + AluY SINE Alu 1 118 -193 269 26 26 0 chr4 46379696 46379734 -137908928 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 342 336 0 18 chr4 46379955 46380068 -137908594 - MIR3 SINE MIR -31 177 67 441 273 0 48 chr4 46380358 46380399 -137908263 - MER103 DNA DNA -8 158 117 1728 197 52 50 chr4 46380399 46380821 -137907841 + MSTB LTR MaLR 4 426 0 441 273 0 48 chr4 46380821 46380944 -137907718 - MER103 DNA DNA -49 117 2 490 300 38 79 chr4 46382054 46382321 -137906341 + MIR SINE MIR 1 256 -6 1197 216 61 27 chr4 46382936 46383264 -137905398 - MER44D DNA MER2_type 0 609 1 469 238 115 30 chr4 46383377 46383612 -137905050 + Charlie5 DNA MER1_type 2369 2623 0 482 382 5 19 chr4 46384442 46384649 -137904013 + MIR3 SINE MIR 5 208 0 237 289 103 83 chr4 46384728 46384932 -137903730 - L2 LINE L2 -4 3309 3102 23 68 0 0 chr4 46385039 46385083 -137903579 + AT_rich Low_complexity Low_complexity 1 44 0 189 317 188 10 chr4 46385094 46385195 -137903467 - L2 LINE L2 -31 3282 3164 994 249 140 35 chr4 46385198 46385369 -137903293 + L1MCc LINE L1 17 169 -6254 2423 68 0 13 chr4 46385369 46385680 -137902982 + AluY SINE Alu 1 307 -4 994 249 140 35 chr4 46385680 46385930 -137902732 + L1MCc LINE L1 169 482 -5941 832 175 0 0 chr4 46386190 46386327 -137902335 + FAM SINE Alu 16 152 -33 276 100 0 0 chr4 46386338 46386378 -137902284 + (TAGA)n Simple_repeat Simple_repeat 4 43 0 666 283 71 69 chr4 46386440 46386846 -137901816 + L1MCc LINE L1 738 1144 -5279 1700 185 27 18 chr4 46386907 46387236 -137901426 + MLT1A1 LTR MaLR 34 365 0 317 319 145 11 chr4 46387236 46387516 -137901146 + MLT1J1 LTR MaLR 126 443 -3 25 0 0 0 chr4 46388452 46388477 -137900185 + AT_rich Low_complexity Low_complexity 1 25 0 461 153 0 10 chr4 46388477 46388575 -137900087 - L1MA7 LINE L1 -6 6285 6189 4155 226 54 26 chr4 46389273 46390502 -137898160 - L1 LINE L1 -1062 5084 3822 249 33 0 0 chr4 46391530 46391560 -137897102 + (TG)n Simple_repeat Simple_repeat 2 31 0 1495 194 18 12 chr4 46391565 46391895 -137896767 - L1MB8 LINE L1 -3 6175 5844 2115 85 57 0 chr4 46392746 46393029 -137895633 - AluSx SINE Alu -13 299 1 259 302 67 20 chr4 46393358 46393507 -137895155 + MLT1J2 LTR MaLR 20 175 -275 27 49 0 0 chr4 46394172 46394213 -137894449 + AT_rich Low_complexity Low_complexity 1 41 0 2210 143 8 76 chr4 46395243 46395717 -137892945 + L1PB4 LINE L1 5715 6156 0 246 317 85 37 chr4 46396651 46396815 -137891847 - MER5B DNA MER1_type 0 178 7 383 163 59 7 chr4 46396920 46397073 -137891589 + (TA)n Simple_repeat Simple_repeat 1 161 0 184 296 74 25 chr4 46397188 46397269 -137891393 + MER5A DNA MER1_type 94 178 -11 1948 147 30 22 chr4 46397406 46397774 -137890888 + THE1C LTR MaLR 4 374 -1 212 393 0 12 chr4 46398008 46398092 -137890570 - MIR SINE MIR -155 107 25 30 0 0 0 chr4 46398360 46398390 -137890272 + AT_rich Low_complexity Low_complexity 1 30 0 5209 187 24 20 chr4 46398440 46400321 -137888341 - L1PA15 LINE L1 -1 6164 4280 486 282 21 32 chr4 46450781 46450969 -137837693 - MER101B LTR ERV1 -51 519 334 232 281 0 37 chr4 46451011 46451093 -137837569 - MER101B LTR ERV1 -479 91 13 378 0 0 0 chr4 46451810 46451852 -137836810 + (TA)n Simple_repeat Simple_repeat 2 43 0 1326 227 34 29 chr4 46451853 46452262 -137836400 + L1MC2 LINE L1 5934 6344 0 1350 248 70 22 chr4 46456309 46456709 -137831953 - LOR1b LTR ERV1 -42 419 1 1134 192 92 30 chr4 46456777 46457048 -137831614 - AluJb SINE Alu -14 288 1 214 284 126 11 chr4 46457262 46457357 -137831305 + MIR SINE MIR 124 229 -33 541 186 0 0 chr4 46458653 46458750 -137829912 - pTR5 LTR ERV1 -2282 156 60 266 147 54 88 chr4 46458750 46458843 -137829819 - LTR30 LTR ERV1 -75 627 227 2812 239 106 38 chr4 46458843 46459828 -137828834 - pTR5 LTR ERV1 -413 2025 974 280 164 0 119 chr4 46460066 46460105 -137828557 + MLT1I LTR MaLR 349 378 -31 1861 163 22 25 chr4 46460105 46460467 -137828195 + THE1B LTR MaLR 1 361 -3 280 164 0 119 chr4 46460467 46460494 -137828168 + MLT1I LTR MaLR 378 407 -2 367 154 51 0 chr4 46462253 46462331 -137826331 + MLT2A2 LTR ERVL 1 82 -371 9439 220 8 10 chr4 46462436 46464915 -137823747 - L1P LINE L1 -725 5426 2955 738 282 87 49 chr4 46464924 46465456 -137823206 - L1MEc LINE L1 -3429 2786 2235 252 176 29 15 chr4 46465473 46465541 -137823121 + (TA)n Simple_repeat Simple_repeat 1 69 0 236 205 26 8 chr4 46465560 46465677 -137822985 + (TA)n Simple_repeat Simple_repeat 2 120 0 210 118 0 0 chr4 46465681 46465715 -137822947 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1618 257 69 23 chr4 46465723 46466451 -137822211 - L1MEc LINE L1 -4151 2245 1485 21 36 0 0 chr4 46466668 46466696 -137821966 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr4 46467634 46467671 -137820991 + AT_rich Low_complexity Low_complexity 1 37 0 807 216 0 33 chr4 46468322 46468503 -137820159 + FRAM SINE Alu 2 176 0 2032 101 10 62 chr4 46468669 46468977 -137819685 - AluSx SINE Alu -20 292 1 2696 190 43 46 chr4 46469024 46469755 -137818907 - LTR1 LTR ERV1 -2 820 100 344 135 0 0 chr4 46469758 46469810 -137818852 - L1P LINE L1 -1976 4170 4119 1661 104 2 5 chr4 46469810 46470055 -137818607 - LTR12 LTR ERV1 -13 701 355 369 213 0 0 chr4 46470057 46470132 -137818530 - LTR30 LTR ERV1 -104 618 544 469 207 158 12 chr4 46470135 46470299 -137818363 - LTR12 LTR ERV1 -426 288 101 742 94 9 0 chr4 46470405 46470511 -137818151 - L1P LINE L1 -2064 4082 3976 498 191 0 0 chr4 46470720 46470804 -137817858 - L1M3 LINE L1 -406 5777 5694 23 92 0 0 chr4 46471437 46471502 -137817160 + AT_rich Low_complexity Low_complexity 1 65 0 1203 258 19 30 chr4 46471513 46471882 -137816780 - MLT1A2 LTR MaLR -7 367 3 199 346 28 19 chr4 46473831 46473938 -137814724 - MER5A DNA MER1_type -75 114 7 608 226 102 0 chr4 46473983 46474120 -137814542 - FRAM SINE Alu -25 151 1 1999 95 3 52 chr4 46474220 46474561 -137814101 + AluY SINE Alu 3 311 0 24 0 0 0 chr4 46474794 46474818 -137813844 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr4 46475519 46475543 -137813119 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr4 46475854 46475880 -137812782 + AT_rich Low_complexity Low_complexity 1 26 0 1118 153 0 0 chr4 46476070 46476233 -137812429 - AluSg/x SINE Alu -18 294 132 439 357 24 45 chr4 46476367 46476658 -137812004 + LTR16B LTR ERVL 39 323 -141 21 71 0 0 chr4 46477210 46477252 -137811410 + AT_rich Low_complexity Low_complexity 1 42 0 26 64 0 0 chr4 46477301 46477348 -137811314 + AT_rich Low_complexity Low_complexity 1 47 0 1792 156 7 30 chr4 46477770 46478072 -137810590 + AluSx SINE Alu 1 295 -17 23 54 0 0 chr4 46478240 46478277 -137810385 + AT_rich Low_complexity Low_complexity 1 37 0 312 287 104 9 chr4 46478590 46478705 -137809957 - MIR SINE MIR -13 249 124 1342 155 92 30 chr4 46478918 46479189 -137809473 + AluJb SINE Alu 1 288 -24 1809 188 70 22 chr4 46479257 46479657 -137809005 + LOR1b LTR ERV1 1 419 -42 22 56 0 0 chr4 46479806 46479842 -137808820 + AT_rich Low_complexity Low_complexity 1 36 0 230 132 0 113 chr4 46480293 46480346 -137808316 + L1MC3 LINE L1 6706 6752 -1033 5202 181 92 37 chr4 46480346 46481562 -137807100 + pTR5 LTR ERV1 743 2025 -413 323 125 54 76 chr4 46481562 46481654 -137807008 + LTR30 LTR ERV1 227 302 -75 2202 139 0 6 chr4 46481659 46481996 -137806666 + pTR5 LTR ERV1 168 502 -1936 * 31492 97 7 6 chr4 46481973 46486382 -137802280 + HERV9 LTR ERV1 17 4428 -3971 1054 153 0 0 chr4 46486389 46486575 -137802087 + LTR12 LTR ERV1 101 277 -437 295 273 10 0 chr4 46486575 46486674 -137801988 + LTR30 LTR ERV1 544 643 -79 1485 123 0 0 chr4 46486674 46486886 -137801776 + LTR12 LTR ERV1 480 691 -23 2338 190 85 11 chr4 46486896 46487705 -137800957 + L1MC3 LINE L1 6746 7766 -19 1905 145 6 28 chr4 46487816 46488134 -137800528 + AluSx SINE Alu 1 311 -1 215 440 0 0 chr4 46488203 46488287 -137800375 - L2 LINE L2 0 3272 3189 241 370 125 18 chr4 46488331 46488555 -137800107 + L2 LINE L2 2846 3093 -220 220 203 145 29 chr4 46489008 46489077 -137799585 - MIR SINE MIR -121 141 65 317 24 0 0 chr4 46490208 46490250 -137798412 - L1P LINE L1 -1017 5129 5088 6920 16 1 0 chr4 46490250 46491043 -137797619 + L1PA2 LINE L1 5356 6153 -2 198 71 0 0 chr4 46491104 46491132 -137797530 + (A)n Simple_repeat Simple_repeat 1 28 0 3749 136 80 13 chr4 46491133 46491812 -137796850 + L1PB1 LINE L1 5428 6151 0 10562 220 46 18 chr4 46491819 46492017 -137796645 + L1MB1 LINE L1 2112 2303 -3865 1680 165 7 26 chr4 46492017 46492320 -137796342 - AluJb SINE Alu -9 303 7 10562 220 46 18 chr4 46492320 46494534 -137794128 + L1MB1 LINE L1 2303 4680 -1488 1981 105 0 60 chr4 46494534 46494848 -137793814 - AluY SINE Alu -16 295 1 10562 220 46 18 chr4 46494848 46496380 -137792282 + L1MB1 LINE L1 4680 6167 -1 23 54 0 0 chr4 46496877 46496914 -137791748 + AT_rich Low_complexity Low_complexity 1 37 0 180 163 47 47 chr4 46497098 46497141 -137791521 - L2 LINE L2 0 3313 3271 396 331 76 0 chr4 46497756 46497928 -137790734 + MIR SINE MIR 69 253 -9 3504 176 18 15 chr4 46498113 46498784 -137789878 + L1PB4 LINE L1 5437 6109 -47 26 30 0 0 chr4 46499147 46499180 -137789482 + AT_rich Low_complexity Low_complexity 1 33 0 815 263 48 67 chr4 46500014 46500489 -137788173 - LTR37B LTR ERV1 -2 466 1 23 33 0 0 chr4 46500829 46500859 -137787803 + AT_rich Low_complexity Low_complexity 1 30 0 30 100 0 0 chr4 46501891 46501991 -137786671 + AT_rich Low_complexity Low_complexity 1 100 0 282 216 67 75 chr4 46502662 46502796 -137785866 + L2 LINE L2 3105 3237 -76 379 304 82 82 chr4 46502797 46503054 -137785608 - L2 LINE L2 -432 2882 2626 6236 103 72 25 chr4 46503687 46504710 -137783952 + MER11C LTR ERVK 1 1071 0 26 0 0 0 chr4 46504916 46504942 -137783720 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr4 46505100 46505121 -137783541 + AT_rich Low_complexity Low_complexity 1 21 0 472 286 140 60 chr4 46505683 46505918 -137782744 - L1ME2 LINE L1 0 6233 6018 2223 182 9 23 chr4 46505918 46506358 -137782304 + Tigger2a DNA MER2_type 1 434 0 472 286 140 60 chr4 46506358 46507078 -137781584 - L1ME2 LINE L1 -215 6018 5204 782 273 15 8 chr4 46507198 46507465 -137781197 - L1ME2 LINE L1 -5477 919 651 406 253 8 48 chr4 46507621 46507660 -137781002 - L1MC4a LINE L1 -1062 6746 6707 1669 186 8 51 chr4 46507660 46508052 -137780610 + THE1C LTR MaLR 1 375 0 406 253 8 48 chr4 46508052 46508162 -137780500 - L1MC4a LINE L1 -1101 6707 6627 1294 196 29 7 chr4 46508202 46508482 -137780180 + L1MA9 LINE L1 5989 6274 -38 1491 131 7 25 chr4 46508635 46508910 -137779752 + L1MA2 LINE L1 6035 6304 0 33 0 0 0 chr4 46508910 46508943 -137779719 + AT_rich Low_complexity Low_complexity 1 33 0 339 316 124 18 chr4 46508963 46509188 -137779474 + MIR SINE MIR 11 259 -3 287 339 37 32 chr4 46509433 46509484 -137779178 + Charlie2 DNA MER1_type 281 330 -2452 1512 184 87 0 chr4 46509484 46509750 -137778912 - AluJb SINE Alu -18 294 6 287 339 37 32 chr4 46509750 46509887 -137778775 + Charlie2 DNA MER1_type 330 470 -2312 306 73 0 0 chr4 46510405 46510446 -137778216 + (TG)n Simple_repeat Simple_repeat 2 42 0 321 280 93 8 chr4 46510605 46510723 -137777939 - MIR SINE MIR -32 230 103 565 225 267 0 chr4 46511341 46511577 -137777085 + MER33 DNA MER1_type 4 302 -22 25 0 0 0 chr4 46511983 46512008 -137776654 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr4 46512226 46512250 -137776412 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr4 46512565 46512596 -137776066 + AT_rich Low_complexity Low_complexity 1 31 0 203 267 0 0 chr4 46512910 46512955 -137775707 + A-rich Low_complexity Low_complexity 5 49 0 21 0 0 0 chr4 46513022 46513043 -137775619 + AT_rich Low_complexity Low_complexity 1 21 0 1959 116 55 3 chr4 46513600 46513893 -137774769 + AluSq SINE Alu 1 308 -5 22 0 0 0 chr4 46514745 46514767 -137773895 + AT_rich Low_complexity Low_complexity 1 22 0 3586 328 100 19 chr4 46515599 46517473 -137771189 - L2 LINE L2 -341 2973 949 274 345 30 24 chr4 46517600 46517768 -137770894 + MIR SINE MIR 94 262 0 396 0 0 0 chr4 46519767 46519811 -137768851 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 1428 210 37 30 chr4 46519816 46520220 -137768442 + L1MC2 LINE L1 5938 6344 0 27 100 0 0 chr4 46520628 46520718 -137767944 + AT_rich Low_complexity Low_complexity 1 90 0 23 54 0 0 chr4 46520833 46520870 -137767792 + AT_rich Low_complexity Low_complexity 1 37 0 278 327 9 9 chr4 46521622 46521729 -137766933 - MLT1L LTR MaLR -381 234 128 26 30 0 0 chr4 46521877 46521910 -137766752 + AT_rich Low_complexity Low_complexity 1 33 0 22 70 0 0 chr4 46521974 46522017 -137766645 + AT_rich Low_complexity Low_complexity 1 43 0 36 53 0 0 chr4 46522145 46522202 -137766460 + AT_rich Low_complexity Low_complexity 1 57 0 654 155 0 0 chr4 46522202 46522299 -137766363 - U6 snRNA snRNA -6 101 5 22 35 0 0 chr4 46522341 46522370 -137766292 + AT_rich Low_complexity Low_complexity 1 29 0 27 62 0 0 chr4 46522385 46522433 -137766229 + AT_rich Low_complexity Low_complexity 1 48 0 302 274 102 38 chr4 46522495 46522681 -137765981 - MIR SINE MIR 0 262 65 330 258 70 38 chr4 46522697 46522883 -137765779 + L1ME LINE L1 5600 5791 -330 22 80 0 0 chr4 46523251 46523301 -137765361 + AT_rich Low_complexity Low_complexity 1 50 0 1751 141 22 0 chr4 46523812 46524089 -137764573 + AluSx SINE Alu 5 287 -25 950 205 129 23 chr4 46524161 46524424 -137764238 - MLT1A2 LTR MaLR 0 374 84 4509 114 91 121 chr4 46524427 46525856 -137762806 + pTR5 LTR ERV1 743 2437 -1 416 208 0 0 chr4 46525863 46525940 -137762722 - MLT1A2 LTR MaLR -293 81 5 3605 97 31 24 chr4 46526133 46526709 -137761953 - LTR19B LTR ERV1 0 580 1 206 313 28 76 chr4 46526916 46527060 -137761602 - L2 LINE L2 -559 2755 2619 299 259 15 38 chr4 46527099 46527230 -137761432 + LTR37B LTR ERV1 331 458 -10 1497 213 148 16 chr4 46527287 46527734 -137760928 + LTR22 LTR ERVK 4 509 0 255 97 32 16 chr4 46527912 46527974 -137760688 + T-rich Low_complexity Low_complexity 3 65 0 1403 253 101 64 chr4 46528173 46528735 -137759927 + MLT1E2 LTR MaLR 44 626 0 304 272 61 69 chr4 46529072 46529418 -137759244 + MER31-int LTR ERV1 3400 3742 -1194 5941 211 61 66 chr4 46529434 46531085 -137757577 - MER52A LTR ERV1 0 1755 1 417 284 21 77 chr4 46531154 46531348 -137757314 + MER31-int LTR ERV1 3818 4000 -936 1164 261 19 21 chr4 46531664 46532039 -137756623 + LTR37B LTR ERV1 87 460 -8 216 350 27 73 chr4 46532049 46532418 -137756244 - L2 LINE L2 -736 2578 2227 493 333 103 81 chr4 46533315 46533859 -137754803 + L1MEd LINE L1 3 558 -5561 220 273 61 15 chr4 46534677 46534743 -137753919 - L2 LINE L2 -1 3312 3244 380 203 61 101 chr4 46535226 46535374 -137753288 - MLT1D LTR MaLR 0 505 364 291 278 69 0 chr4 46535512 46535584 -137753078 - MLT1D LTR MaLR -144 361 285 275 220 83 13 chr4 46535710 46535822 -137752840 - MLT1D LTR MaLR 0 505 349 285 276 112 10 chr4 46536000 46536098 -137752564 - MLT1D LTR MaLR -146 359 252 976 217 31 18 chr4 46536161 46536293 -137752369 - MLT1D LTR MaLR -276 229 91 2455 91 27 19 chr4 46536293 46536665 -137751997 + THE1C LTR MaLR 1 375 0 976 217 31 18 chr4 46536665 46536758 -137751904 - MLT1D LTR MaLR -414 91 1 325 229 24 12 chr4 46536759 46536842 -137751820 + MIR SINE MIR 82 165 -97 239 286 14 0 chr4 46536856 46536926 -137751736 + (TA)n Simple_repeat Simple_repeat 2 72 0 26 30 0 0 chr4 46537034 46537067 -137751595 + AT_rich Low_complexity Low_complexity 1 33 0 184 375 36 27 chr4 46537308 46537420 -137751242 + MIR SINE MIR 15 127 -135 1776 160 0 23 chr4 46538117 46538417 -137750245 - AluSx SINE Alu -19 293 1 312 327 132 24 chr4 46538808 46539013 -137749649 + HAL1b LINE L1 61 287 -1061 253 209 15 30 chr4 46539026 46539093 -137749569 + (CATATA)n Simple_repeat Simple_repeat 3 68 0 2047 136 3 0 chr4 46539739 46540034 -137748628 + AluSq SINE Alu 2 297 -16 186 43 0 0 chr4 46540202 46540225 -137748437 + (T)n Simple_repeat Simple_repeat 1 23 0 3242 16 0 0 chr4 46540230 46540601 -137748061 - L1PA2 LINE L1 0 6155 5785 3465 38 0 0 chr4 46540601 46541023 -137747639 + L1P LINE L1 4737 5158 -988 330 287 9 26 chr4 46541035 46541150 -137747512 + MIR SINE MIR 103 215 -47 2370 84 0 3 chr4 46541155 46541454 -137747208 - AluY SINE Alu -13 298 1 29 47 0 0 chr4 46541463 46541506 -137747156 + AT_rich Low_complexity Low_complexity 1 43 0 4079 137 219 28 chr4 46542019 46542981 -137745681 - MER11B LTR ERVK 0 1236 1 365 292 138 64 chr4 46543194 46543541 -137745121 - L1ME3 LINE L1 -242 5920 5557 2259 124 0 0 chr4 46544726 46545085 -137743577 - AluSg SINE Alu 0 359 1 4879 161 139 115 chr4 46545126 46546609 -137742053 + pTR5 LTR ERV1 731 2438 0 1988 244 18 15 chr4 46548009 46548558 -137740104 + L1MB4 LINE L1 5623 6173 -7 551 236 52 29 chr4 46549346 46549520 -137739142 - LTR41 LTR ERVL -591 182 5 1748 245 33 59 chr4 46550379 46550444 -137738218 - L1ME1 LINE L1 -59 6125 6060 2221 74 0 7 chr4 46550444 46550757 -137737905 - AluY SINE Alu 0 311 1 1748 245 33 59 chr4 46550757 46551275 -137737387 - L1ME1 LINE L1 -124 6060 5564 1997 113 0 36 chr4 46551275 46551577 -137737085 + AluY SINE Alu 7 297 -14 1748 245 33 59 chr4 46551577 46551655 -137737007 - L1ME1 LINE L1 -620 5564 5486 402 159 129 38 chr4 46551689 46551821 -137736841 - L1MB7 LINE L1 -7 6177 6034 364 317 97 68 chr4 46551846 46552155 -137736507 - L1M4c LINE L1 -6035 349 32 2199 161 28 0 chr4 46552743 46553096 -137735566 - THE1B LTR MaLR 0 364 2 400 281 26 26 chr4 46553117 46553231 -137735431 + MER91B DNA MER1_type 25 138 -52 224 130 22 0 chr4 46554542 46554588 -137734074 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 1223 150 20 47 chr4 46555896 46556149 -137732513 + MER4D LTR ERV1 1 246 -657 3490 153 38 10 chr4 46556249 46556857 -137731805 + MER4D LTR ERV1 277 901 -2 1996 171 38 55 chr4 46557188 46557732 -137730930 - MLT2A2 LTR ERVL -8 546 1 21 57 0 0 chr4 46557919 46557954 -137730708 + AT_rich Low_complexity Low_complexity 1 35 0 478 244 0 67 chr4 46559489 46559516 -137729146 - MLT1I LTR MaLR -2 407 380 2125 135 22 25 chr4 46559516 46559878 -137728784 - THE1B LTR MaLR -3 361 1 478 244 0 67 chr4 46559878 46559969 -137728693 - MLT1I LTR MaLR -29 380 297 293 252 76 69 chr4 46560163 46560294 -137728368 - MLT1I LTR MaLR -268 141 10 765 221 92 31 chr4 46560315 46560510 -137728152 - MER63A DNA MER1_type -3 207 1 259 240 40 0 chr4 46561379 46561454 -137727208 + L1ME3A LINE L1 4633 4710 -1436 451 326 75 15 chr4 46561601 46562366 -137726296 + L1ME3A LINE L1 4906 5721 -449 236 344 0 0 chr4 46562372 46562436 -137726226 + MIR SINE MIR 11 74 -188 389 296 101 17 chr4 46562471 46562650 -137726012 + L1ME3A LINE L1 5754 5947 -223 370 49 33 0 chr4 46563782 46563843 -137724819 + (TA)n Simple_repeat Simple_repeat 2 64 0 801 137 192 0 chr4 46564122 46564268 -137724394 + L1PA16 LINE L1 5 178 -7403 1912 156 99 13 chr4 46564270 46564655 -137724007 + MSTA LTR MaLR 11 428 0 8338 195 40 0 chr4 46564655 46566242 -137722420 + MSTA-int LTR MaLR 1 1651 0 1156 110 42 16 chr4 46566242 46566433 -137722229 + MSTA LTR MaLR 1 196 -232 228 216 20 0 chr4 46566433 46566484 -137722178 + LTR30 LTR ERV1 1 52 -670 1430 62 273 217 chr4 46566484 46566917 -137721745 + LTR12 LTR ERV1 53 509 -205 6149 202 40 74 chr4 46566917 46568284 -137720378 + L1PA16 LINE L1 4122 5533 -2071 5318 198 16 9 chr4 46568284 46570181 -137718481 + L1PA14 LINE L1 4253 6159 -2 6149 202 40 74 chr4 46570181 46570395 -137718267 + L1PA16 LINE L1 5533 5753 -1851 519 139 0 57 chr4 46570395 46570517 -137718145 + Tigger7 DNA MER2_type 2362 2476 -111 6149 202 40 74 chr4 46570517 46572424 -137716238 + L1PA16 LINE L1 5753 7595 -9 214 185 0 46 chr4 46572427 46572492 -137716170 + A-rich Low_complexity Low_complexity 5 66 0 1275 247 22 10 chr4 46572716 46573028 -137715634 - MLT-int LTR MaLR -1109 626 311 * 2516 252 51 8 chr4 46573024 46573612 -137715050 + MSTD-int LTR MaLR 1123 1735 0 621 202 219 84 chr4 46573614 46573961 -137714701 + MSTD LTR MaLR 3 396 0 26 64 0 0 chr4 46574391 46574438 -137714224 + AT_rich Low_complexity Low_complexity 1 47 0 26 82 0 0 chr4 46574557 46574618 -137714044 + AT_rich Low_complexity Low_complexity 1 61 0 298 229 0 29 chr4 46575100 46575170 -137713492 + MER101B LTR ERV1 24 91 -479 739 223 39 60 chr4 46575212 46575445 -137713217 + MER101B LTR ERV1 236 459 -15 286 135 0 58 chr4 46575976 46576028 -137712634 + LTR57-int LTR ERVL 303 351 -4992 457 198 38 24 chr4 46576355 46576559 -137712103 + MER34 LTR ERV1 122 358 -184 443 255 57 25 chr4 46576571 46576728 -137711934 + LOR1-int LTR ERV1 1166 1327 -459 314 273 0 118 chr4 46576806 46576916 -137711746 + LOR1-int LTR ERV1 3786 3882 -4238 540 222 0 59 chr4 46577533 46577668 -137710994 + LOR1-int LTR ERV1 6970 7096 -1024 1125 260 120 29 chr4 46577708 46578150 -137710512 + MER101B LTR ERV1 24 505 -65 351 0 0 0 chr4 46578166 46578205 -137710457 + (TA)n Simple_repeat Simple_repeat 1 39 0 1080 334 58 27 chr4 46578250 46579236 -137709426 - MERVL LTR ERVL -1982 3503 2572 779 287 79 63 chr4 46579388 46579931 -137708731 - L1ME LINE L1 -5417 653 102 2312 81 0 7 chr4 46580043 46580341 -137708321 - AluY SINE Alu 0 311 16 263 170 0 19 chr4 46580372 46580425 -137708237 - L1MDa LINE L1 -4643 1897 1846 369 341 16 0 chr4 46580428 46580551 -137708111 - LTR16A LTR ERVL -125 325 201 351 0 0 0 chr4 46580717 46580756 -137707906 + (CA)n Simple_repeat Simple_repeat 2 40 0 1699 216 18 0 chr4 46581907 46582235 -137706427 - MSTB1 LTR MaLR -98 334 1 189 94 0 0 chr4 46583759 46583791 -137704871 + (TA)n Simple_repeat Simple_repeat 1 32 0 1634 172 51 0 chr4 46585147 46585420 -137703242 - AluJb SINE Alu -25 287 1 361 323 24 67 chr4 46586155 46586409 -137702253 + MIR SINE MIR 19 261 -1 634 272 40 44 chr4 46587516 46587766 -137700896 - MER46C DNA MER2_type -4 334 86 533 264 134 10 chr4 46588058 46588259 -137700403 - MIR SINE MIR -22 240 15 3936 32 36 14 chr4 46589307 46589667 -137698995 - L1PA4 LINE L1 -1 6154 5778 2901 13 0 0 chr4 46589667 46589985 -137698677 - AluYb8 SINE Alu 0 318 1 3936 32 36 14 chr4 46589985 46590128 -137698534 - L1PA4 LINE L1 -377 5778 5640 21 57 0 0 chr4 46590216 46590251 -137698411 + AT_rich Low_complexity Low_complexity 1 35 0 5547 105 179 117 chr4 46590880 46592321 -137696341 + pTR5 LTR ERV1 29 714 0 470 237 51 39 chr4 46593589 46593745 -137694917 + MIR SINE MIR 92 249 -13 588 210 41 54 chr4 46593961 46594218 -137694444 - LOR1-int LTR ERV1 -1762 4902 3059 1273 312 144 9 chr4 46594254 46594908 -137693754 - L2 LINE L2 -953 2361 1620 2727 236 21 58 chr4 46595127 46595778 -137692884 - MLT1A1-int LTR MaLR -967 768 95 2419 101 6 0 chr4 46595778 46596123 -137692539 + L1PA7 LINE L1 5789 6135 -19 381 58 0 0 chr4 46596123 46596175 -137692487 + (CATA)n Simple_repeat Simple_repeat 3 54 0 2727 236 21 58 chr4 46596175 46596318 -137692344 - MLT1A1-int LTR MaLR -1638 97 2 1437 214 61 12 chr4 46596321 46596667 -137691995 - MLT1A1 LTR MaLR -2 363 1 8576 219 70 21 chr4 46596694 46597391 -137691271 + L1MC3 LINE L1 4978 5639 -2146 16496 43 7 0 chr4 46597391 46600196 -137688466 + L1PA4 LINE L1 3350 6152 -3 8576 219 70 21 chr4 46600196 46601335 -137687327 + L1MC3 LINE L1 5639 6994 -791 260 27 27 0 chr4 46601335 46601372 -137687290 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 8576 219 70 21 chr4 46601372 46602204 -137686458 + L1MC3 LINE L1 6994 7784 -1 21 0 0 0 chr4 46602540 46602561 -137686101 + AT_rich Low_complexity Low_complexity 1 21 0 254 210 173 12 chr4 46602898 46602979 -137685683 - MLT1L LTR MaLR 0 615 522 180 341 109 14 chr4 46603632 46603770 -137684892 - MIR SINE MIR -75 187 37 203 179 0 0 chr4 46603921 46603960 -137684702 + A-rich Low_complexity Low_complexity 1 39 0 9707 202 23 8 chr4 46604841 46608101 -137680561 - L1MA4 LINE L1 -7 6995 3685 5599 251 57 78 chr4 46608084 46610324 -137678338 - L1MA4 LINE L1 -4652 2197 6 * 2312 62 7 26 chr4 46610427 46610735 -137677927 + AluY SINE Alu 1 302 -9 5313 59 9 0 chr4 46610788 46611464 -137677198 - L1PA7 LINE L1 0 6154 5473 15678 104 15 4 chr4 46611464 46613925 -137674737 + L1PA7 LINE L1 3005 5487 -685 368 71 0 0 chr4 46614216 46614272 -137674390 + L1PA6 LINE L1 6099 6154 0 231 114 0 0 chr4 46614414 46614449 -137674213 + (TG)n Simple_repeat Simple_repeat 2 36 0 21 36 0 0 chr4 46615083 46615111 -137673551 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr4 46615310 46615338 -137673324 + AT_rich Low_complexity Low_complexity 1 28 0 1930 159 0 7 chr4 46615363 46615672 -137672990 + AluJb SINE Alu 1 307 -5 2232 121 0 0 chr4 46615836 46616134 -137672528 - AluSg SINE Alu -12 298 1 1523 189 40 0 chr4 46616794 46617069 -137671593 - AluJo SINE Alu -6 306 21 1826 195 147 20 chr4 46617477 46617933 -137670729 - MLT2B1 LTR ERVL 0 520 7 2397 70 0 7 chr4 46618061 46618359 -137670303 - AluY SINE Alu -14 297 2 1574 277 80 15 chr4 46618422 46619490 -137669172 - L1ME2 LINE L1 -210 5954 4817 23 0 0 0 chr4 46619491 46619514 -137669148 + AT_rich Low_complexity Low_complexity 1 23 0 2295 131 45 13 chr4 46619899 46620297 -137668365 - L1PA15 LINE L1 -10 6155 5745 508 206 58 152 chr4 46620328 46620605 -137668057 + MLT1B LTR MaLR 1 251 -139 432 205 0 0 chr4 46620618 46620696 -137667966 + MER31A LTR ERV1 9 86 -399 1277 196 4 22 chr4 46620698 46620969 -137667693 + MER31A LTR ERV1 220 485 0 404 220 33 0 chr4 46620969 46621059 -137667603 + MLT1B LTR MaLR 252 344 -46 300 381 23 6 chr4 46621073 46621246 -137667416 - L1MEd LINE L1 -5902 217 42 22 0 0 0 chr4 46621288 46621310 -137667352 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr4 46622077 46622105 -137666557 + AT_rich Low_complexity Low_complexity 1 28 0 269 218 13 0 chr4 46622753 46622831 -137665831 + (TATATG)n Simple_repeat Simple_repeat 4 82 0 25 0 0 0 chr4 46622972 46622997 -137665665 + AT_rich Low_complexity Low_complexity 1 25 0 652 276 92 35 chr4 46623071 46623299 -137665363 - MIR SINE MIR -10 252 12 1328 214 77 17 chr4 46623361 46623711 -137664951 - MLT2C2 LTR ERVL -75 389 19 3208 226 25 42 chr4 46623734 46624936 -137663726 + L1MB5 LINE L1 4971 6162 -12 2265 87 7 10 chr4 46625983 46626282 -137662380 - AluSq SINE Alu -13 300 3 1130 190 49 36 chr4 46626378 46626625 -137662037 - MLT1A1 LTR MaLR 0 365 116 612 295 133 3 chr4 46626905 46627207 -137661455 - MER58B DNA MER1_type 0 341 1 24 32 0 0 chr4 46627835 46627866 -137660796 + AT_rich Low_complexity Low_complexity 1 31 0 32 0 0 0 chr4 46628444 46628476 -137660186 + AT_rich Low_complexity Low_complexity 1 32 0 27 0 0 0 chr4 46628589 46628616 -137660046 + AT_rich Low_complexity Low_complexity 1 27 0 261 0 0 0 chr4 46629232 46629261 -137659401 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1334 251 51 11 chr4 46630140 46630514 -137658148 + LTR52 LTR ERVL 1 389 -32 749 250 0 18 chr4 46630531 46630695 -137657967 + FRAM SINE Alu 2 162 -4 216 86 0 0 chr4 46630723 46630758 -137657904 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 229 113 0 19 chr4 46630883 46630936 -137657726 - MER57A LTR ERV1 -2 401 350 2185 120 64 51 chr4 46630936 46631329 -137657333 + MER48 LTR ERV1 1 398 0 19649 150 16 17 chr4 46631329 46635166 -137653496 + HERVH48 LTR ERV1 1 3537 -2992 17396 114 16 3 chr4 46635159 46637711 -137650951 + HERVH48 LTR ERV1 4069 6654 0 * 1940 112 112 73 chr4 46637711 46638094 -137650568 + MER48 LTR ERV1 1 398 0 991 240 116 31 chr4 46638094 46638448 -137650214 - MER57B LTR ERV1 -49 385 2 777 239 33 48 chr4 46638892 46639164 -137649498 - L1MB8 LINE L1 -1 6177 5910 353 317 103 0 chr4 46639233 46639378 -137649284 + L2 LINE L2 1313 1472 -1842 294 143 0 0 chr4 46639522 46639571 -137649091 + (TA)n Simple_repeat Simple_repeat 1 49 0 204 374 68 27 chr4 46639758 46639977 -137648685 - L2 LINE L2 -86 3227 3000 248 376 70 28 chr4 46640301 46640514 -137648148 + L2 LINE L2 3006 3227 -86 315 71 0 0 chr4 46640637 46640679 -137647983 + (TG)n Simple_repeat Simple_repeat 1 42 0 1799 116 16 46 chr4 46641012 46641315 -137647347 - AluSg SINE Alu -16 294 1 22 0 0 0 chr4 46641325 46641347 -137647315 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr4 46641520 46641542 -137647120 + AT_rich Low_complexity Low_complexity 1 22 0 1188 211 100 4 chr4 46641791 46642051 -137646611 - AluJo SINE Alu -25 287 3 203 381 19 9 chr4 46643982 46644087 -137644575 - MIR SINE MIR -155 107 2 553 246 65 40 chr4 46644212 46644411 -137644251 + L2 LINE L2 354 557 -2757 2332 321 146 22 chr4 46644428 46645761 -137642901 + L2 LINE L2 862 2359 -955 186 167 0 0 chr4 46645915 46645951 -137642711 + (TA)n Simple_repeat Simple_repeat 1 36 0 1484 251 91 0 chr4 46645993 46646379 -137642283 + MLT1D LTR MaLR 84 504 -1 409 316 16 62 chr4 46646445 46646638 -137642024 - MIR SINE MIR -7 255 72 283 381 38 6 chr4 46646638 46646798 -137641864 + L2 LINE L2 2889 3053 -260 181 290 32 16 chr4 46647275 46647337 -137641325 - L2 LINE L2 -556 2758 2696 192 378 88 54 chr4 46647885 46648033 -137640629 - L2 LINE L2 -18 3254 3102 320 264 73 36 chr4 46648497 46648607 -137640055 - L2 LINE L2 -12 3301 3188 24 32 0 0 chr4 46648827 46648858 -137639804 + AT_rich Low_complexity Low_complexity 1 31 0 27 0 0 0 chr4 46649588 46649615 -137639047 + AT_rich Low_complexity Low_complexity 1 27 0 193 292 0 0 chr4 46649968 46650016 -137638646 + L2 LINE L2 3147 3194 -78 701 338 70 3 chr4 46650075 46650377 -137638285 - MLT1I LTR MaLR -3 406 85 665 260 24 6 chr4 46650851 46651020 -137637642 + MIR SINE MIR 66 237 -25 2134 122 3 0 chr4 46651029 46651332 -137637330 - AluSg SINE Alu -6 304 1 5367 159 11 5 chr4 46652174 46653125 -137635537 - L1MA4 LINE L1 0 6300 5345 1222 230 0 7 chr4 46653129 46653425 -137635237 + L1 LINE L1 4977 5270 -876 9745 181 30 63 chr4 46653432 46655264 -137633398 + L1MA3 LINE L1 17 1773 -5792 207 0 0 0 chr4 46655264 46655287 -137633375 + (GA)n Simple_repeat Simple_repeat 2 24 0 9745 181 30 63 chr4 46655287 46655543 -137633119 + L1MA3 LINE L1 1773 2036 -5529 * 14237 179 28 9 chr4 46655541 46659957 -137628705 + L1MA3 LINE L1 3217 7724 0 473 98 27 80 chr4 46659987 46660099 -137628563 + L1M LINE L1 5265 5370 -930 * 556 292 106 61 chr4 46660098 46661047 -137627615 - L1M4 LINE L1 -1652 4494 3503 238 270 27 97 chr4 46661055 46661240 -137627422 - L1MEd LINE L1 -2502 3627 3456 988 244 71 86 chr4 46661248 46661615 -137627047 + MLT1C LTR MaLR 6 366 -101 2054 142 33 3 chr4 46661615 46661982 -137626680 + L1PB4 LINE L1 5777 6154 -2 988 244 71 86 chr4 46661982 46662077 -137626585 + MLT1C LTR MaLR 366 461 -6 405 342 77 25 chr4 46662102 46662546 -137626116 - L1MEd LINE L1 -2742 3387 2921 241 265 162 25 chr4 46663493 46663697 -137624965 - L1MEd LINE L1 -3442 2687 2456 337 379 53 26 chr4 46663795 46664175 -137624487 - HAL1b LINE L1 -889 459 70 2794 120 69 95 chr4 46664289 46664897 -137623765 + LTR14B LTR ERVK 17 608 0 1691 183 0 3 chr4 46665493 46665829 -137622833 + AluSx SINE Alu 2 336 0 336 83 0 0 chr4 46665925 46665973 -137622689 + (TTCC)n Simple_repeat Simple_repeat 3 50 0 327 254 87 38 chr4 46666175 46666257 -137622405 - L1MEd LINE L1 -4911 1220 1143 2017 107 0 30 chr4 46666257 46666556 -137622106 - AluSc SINE Alu -19 290 1 327 254 87 38 chr4 46666556 46666847 -137621815 - L1MEd LINE L1 -4988 1143 942 31 26 0 0 chr4 46667078 46667116 -137621546 + AT_rich Low_complexity Low_complexity 1 38 0 275 325 36 24 chr4 46667791 46667957 -137620705 - L2 LINE L2 0 3313 3146 24 53 0 0 chr4 46669213 46669251 -137619411 + AT_rich Low_complexity Low_complexity 1 38 0 1728 139 57 0 chr4 46669322 46669623 -137619039 - L1PA16 LINE L1 -4 6162 5845 481 273 99 25 chr4 46669626 46669908 -137618754 - HAL1 LINE L1 -169 2338 2036 10105 156 39 14 chr4 46670143 46671912 -137616750 - Tigger1 DNA MER2_type -604 1814 1 226 282 26 0 chr4 46671930 46672008 -137616654 - HAL1 LINE L1 -794 1713 1634 523 369 18 50 chr4 46672054 46672496 -137616166 + L2 LINE L2 2880 3307 -6 260 246 158 44 chr4 46672626 46672923 -137615739 - HAL1 LINE L1 -1286 1221 891 1146 281 212 18 chr4 46672925 46673548 -137615114 - HAL1 LINE L1 -1662 845 102 813 159 55 0 chr4 46674781 46674926 -137613736 + BC200 scRNA scRNA 1 153 -47 212 111 22 0 chr4 46674938 46674983 -137613679 + (TA)n Simple_repeat Simple_repeat 2 47 0 39291 42 2 0 chr4 46675708 46681333 -137607329 + L1PA4 LINE L1 525 6155 0 232 266 101 37 chr4 46681602 46681711 -137606951 + L1ME3A LINE L1 5423 5538 -624 702 290 62 23 chr4 46682252 46682455 -137606207 + L1ME3A LINE L1 5564 5757 -413 183 42 0 0 chr4 46682455 46682479 -137606183 + (TA)n Simple_repeat Simple_repeat 2 25 0 1450 212 31 11 chr4 46682479 46682833 -137605829 + MLT1A1 LTR MaLR 2 362 -3 702 290 62 23 chr4 46682833 46682980 -137605682 + L1ME3A LINE L1 5756 5929 -241 28 61 0 0 chr4 46683237 46683286 -137605376 + AT_rich Low_complexity Low_complexity 1 49 0 333 226 51 73 chr4 46683368 46683505 -137605157 - MLT1F1-int LTR MaLR -1237 134 1 381 174 47 0 chr4 46683512 46683598 -137605064 - MLT1F1 LTR MaLR -8 559 470 532 273 28 23 chr4 46683617 46683882 -137604780 + MLT1A1-int LTR MaLR 108 490 -881 29 47 0 0 chr4 46684488 46684531 -137604131 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr4 46684854 46684877 -137603785 + AT_rich Low_complexity Low_complexity 1 23 0 1405 113 38 14 chr4 46684950 46685162 -137603500 + AluSg/x SINE Alu 85 301 -11 21 0 0 0 chr4 46685560 46685581 -137603081 + AT_rich Low_complexity Low_complexity 1 21 0 189 107 0 0 chr4 46686287 46686315 -137602347 + (TG)n Simple_repeat Simple_repeat 2 29 0 247 208 0 0 chr4 46687469 46687522 -137601140 + (TTTA)n Simple_repeat Simple_repeat 1 53 0 267 361 36 36 chr4 46688382 46688656 -137600006 + HERV16 LTR ERVL 369 642 -4354 353 326 37 7 chr4 46689883 46690018 -137598644 - MLT1I LTR MaLR -208 201 63 2202 102 3 0 chr4 46690176 46690471 -137598191 - AluSg SINE Alu -14 296 1 344 244 0 8 chr4 46690620 46690737 -137597925 + MER46C DNA MER2_type 1 208 -130 1626 163 40 22 chr4 46691417 46691735 -137596927 + AluJo SINE Alu 1 323 0 237 231 39 0 chr4 46691804 46691882 -137596780 + (TA)n Simple_repeat Simple_repeat 2 82 0 21 0 0 0 chr4 46692014 46692035 -137596627 + AT_rich Low_complexity Low_complexity 1 21 0 842 224 158 11 chr4 46692690 46693106 -137595556 - MLT1D LTR MaLR 0 505 1 231 326 23 23 chr4 46693192 46693278 -137595384 + MIR SINE MIR 38 123 -139 596 359 15 9 chr4 46693403 46693740 -137594922 + L1ME3A LINE L1 5529 5867 -303 567 211 15 30 chr4 46694074 46694207 -137594455 - MER3 DNA MER1_type -77 132 2 32 0 0 0 chr4 46694594 46694626 -137594036 + AT_rich Low_complexity Low_complexity 1 32 0 453 289 56 0 chr4 46694692 46694834 -137593828 - MIR SINE MIR -76 186 37 1788 166 7 0 chr4 46695213 46695509 -137593153 + AluSx SINE Alu 1 298 -14 2174 110 53 11 chr4 46695555 46695910 -137592752 - L1PA13 LINE L1 -4 6159 5790 7094 148 19 4 chr4 46695910 46697601 -137591061 + L1PA13 LINE L1 4069 5785 -383 1221 313 97 15 chr4 46698111 46698890 -137589772 - L1ME3A LINE L1 0 6170 5296 5409 180 21 18 chr4 46698894 46700711 -137587951 - L1MA4 LINE L1 -5 6689 4871 463 276 79 68 chr4 46701009 46701471 -137587191 - L1MA4 LINE L1 -4569 1971 1526 303 381 73 12 chr4 46701732 46701979 -137586683 + LTR16A LTR ERVL 114 375 -75 276 77 0 0 chr4 46701990 46702029 -137586633 + (CA)n Simple_repeat Simple_repeat 1 39 0 715 346 33 11 chr4 46702067 46702431 -137586231 + HERV16 LTR ERVL 3 374 -4622 3927 146 63 36 chr4 46702431 46703180 -137585482 - LTR1 LTR ERV1 -1 784 16 1848 319 48 45 chr4 46703486 46703759 -137584903 + HERV16 LTR ERVL 637 908 -4088 2150 155 59 15 chr4 46703759 46704166 -137584496 + MSTB LTR MaLR 1 425 -1 1848 319 48 45 chr4 46704166 46704322 -137584340 + HERV16 LTR ERVL 908 1062 -3934 2326 95 0 7 chr4 46704322 46704628 -137584034 - AluSx SINE Alu -8 304 1 1848 319 48 45 chr4 46704628 46705093 -137583569 + HERV16 LTR ERVL 1062 1535 -3461 410 287 9 17 chr4 46705164 46705279 -137583383 + HERV16 LTR ERVL 1682 1795 -3201 2243 101 0 3 chr4 46705304 46705601 -137583061 - AluY SINE Alu -15 296 1 318 200 0 100 chr4 46705611 46705711 -137582951 + L1ME1 LINE L1 6073 6162 -4 211 320 67 27 chr4 46705802 46705952 -137582710 + L2 LINE L2 2791 2946 -368 26 0 0 0 chr4 46706444 46706470 -137582192 + AT_rich Low_complexity Low_complexity 1 26 0 614 227 8 23 chr4 46707140 46707272 -137581390 - FLAM_A SINE Alu -2 131 2 369 43 0 0 chr4 46707313 46707360 -137581302 + (TG)n Simple_repeat Simple_repeat 1 47 0 24 53 0 0 chr4 46708554 46708592 -137580070 + AT_rich Low_complexity Low_complexity 1 38 0 2911 123 21 41 chr4 46708978 46709123 -137579539 + L1PA7 LINE L1 4469 4615 -1531 2219 107 0 7 chr4 46709123 46709431 -137579231 + AluY SINE Alu 1 306 -5 2911 123 21 41 chr4 46709431 46709798 -137578864 + L1PA7 LINE L1 4615 4971 -1175 2554 99 6 0 chr4 46709798 46710159 -137578503 + L1PA7 LINE L1 5788 6154 0 710 280 75 49 chr4 46710334 46710680 -137577982 - L2 LINE L2 0 3313 2959 260 383 51 46 chr4 46710970 46711152 -137577510 - LTR16A LTR ERVL 0 450 270 1773 126 8 0 chr4 46711152 46711414 -137577248 + AluSq SINE Alu 42 305 -8 260 383 51 46 chr4 46711414 46711620 -137577042 - LTR16A LTR ERVL -180 270 60 318 318 55 63 chr4 46711861 46712223 -137576439 - HERV16 LTR ERVL -1408 3588 3230 1633 216 87 65 chr4 46712321 46712829 -137575833 - MLT1F LTR MaLR -14 528 10 675 347 52 41 chr4 46712914 46713470 -137575192 - HERV16 LTR ERVL -2307 3457 2896 327 264 34 102 chr4 46713487 46713752 -137574910 + MLT1F1-int LTR MaLR 1124 1370 -1 1361 262 4 8 chr4 46713753 46714229 -137574433 + MLT1F1 LTR MaLR 1 566 -1 1160 133 30 5 chr4 46715079 46715282 -137573380 + HERVH LTR ERV1 5809 6016 -1697 * 3512 112 12 20 chr4 46715275 46715836 -137572826 + HERVH LTR ERV1 7157 7713 0 1481 124 105 14 chr4 46715836 46716165 -137572497 + LTR7 LTR ERV1 1 412 -38 297 0 0 0 chr4 46716749 46716782 -137571880 + (TG)n Simple_repeat Simple_repeat 2 34 0 1300 234 49 38 chr4 46717861 46718447 -137570215 + MER76 LTR ERV 1 656 -32 352 311 95 46 chr4 46718675 46718800 -137569862 - MIR SINE MIR 0 262 145 8800 102 28 14 chr4 46718800 46720069 -137568593 + HSMAR1 DNA Mariner 1 1287 0 352 311 95 46 chr4 46720069 46720184 -137568478 - MIR SINE MIR -117 145 10 22 56 0 0 chr4 46720690 46720726 -137567936 + AT_rich Low_complexity Low_complexity 1 36 0 226 339 33 33 chr4 46720800 46720921 -137567741 + MIR SINE MIR 25 145 -63 1729 199 65 41 chr4 46721368 46721784 -137566878 + MSTB LTR MaLR 1 426 0 188 139 0 23 chr4 46722029 46722072 -137566590 + (TA)n Simple_repeat Simple_repeat 2 43 0 23 0 0 0 chr4 46722745 46722768 -137565894 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr4 46722828 46722849 -137565813 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4 46722890 46722912 -137565750 + AT_rich Low_complexity Low_complexity 1 22 0 326 248 103 26 chr4 46722933 46723050 -137565612 + MIR SINE MIR 95 220 -42 2637 16 7 3 chr4 46723577 46723884 -137564778 - AluY SINE Alu -3 308 1 56 0 0 0 chr4 46724121 46724177 -137564485 + AT_rich Low_complexity Low_complexity 1 56 0 244 250 71 0 chr4 46724195 46724251 -137564411 + MIR SINE MIR 95 154 -108 1948 120 18 4 chr4 46725057 46725379 -137563283 + AluSc SINE Alu 1 326 0 38 61 0 0 chr4 46726208 46726274 -137562388 + AT_rich Low_complexity Low_complexity 1 66 0 2649 251 70 25 chr4 46726295 46727046 -137561616 - L1ME2 LINE L1 -9 6549 5834 2368 88 0 0 chr4 46727046 46727353 -137561309 - AluY SINE Alu -4 307 1 2649 251 70 25 chr4 46727353 46728167 -137560495 - L1ME2 LINE L1 -724 5834 4908 685 276 116 53 chr4 46728167 46729049 -137559613 - L1ME2 LINE L1 -2083 4457 3521 250 320 92 12 chr4 46729077 46729327 -137559335 - L1ME2 LINE L1 -3629 2911 2642 1474 175 76 4 chr4 46729345 46729650 -137559012 + AluSx SINE Alu 3 326 0 1444 165 35 86 chr4 46729656 46729995 -137558667 + MER31B LTR ERV1 2 323 -143 1923 181 9 0 chr4 46730007 46730343 -137558319 + MER47A DNA MER2_type 27 365 -1 275 283 65 22 chr4 46730344 46730482 -137558180 + MER31B LTR ERV1 323 466 0 369 263 169 19 chr4 46730487 46730647 -137558015 - L1ME2 LINE L1 -4037 2684 2501 2366 181 6 25 chr4 46730674 46731160 -137557502 - L1PB4 LINE L1 -3 6153 5677 1915 191 4 9 chr4 46731167 46731717 -137556945 - L1PB4 LINE L1 -686 5470 4921 315 320 134 0 chr4 46732123 46732295 -137556367 - L1ME2 LINE L1 -4484 2056 1862 312 240 23 54 chr4 46732340 46732469 -137556193 - L1ME2 LINE L1 -4941 1599 1475 229 87 43 0 chr4 46733048 46733094 -137555568 + LTR66 LTR ERVL 392 439 -171 226 163 0 0 chr4 46733100 46733143 -137555519 + L1MC4 LINE L1 6660 6702 -1340 259 167 125 0 chr4 46733867 46733963 -137554699 + (TTAA)n Simple_repeat Simple_repeat 3 110 0 21 0 0 0 chr4 46734292 46734313 -137554349 + AT_rich Low_complexity Low_complexity 1 21 0 218 315 8 62 chr4 46735760 46735890 -137552772 - MIR SINE MIR -81 181 59 1587 254 96 33 chr4 46736118 46736661 -137552001 - MER74B LTR ERVL -2 620 44 1817 242 26 7 chr4 46736764 46737219 -137551443 - MLT1C LTR MaLR -1 466 3 209 424 31 31 chr4 46738128 46738319 -137550343 + MIR3 SINE MIR 14 204 -4 455 290 7 0 chr4 46738797 46738959 -137549703 - L1ME1 LINE L1 -5 6161 5996 543 199 41 7 chr4 46739061 46739207 -137549455 + L1MA10 LINE L1 6177 6327 -7 2064 226 58 20 chr4 46739252 46739753 -137548909 + MLT2B1 LTR ERVL 1 520 0 347 288 72 26 chr4 46740085 46740238 -137548424 + HERV16 LTR ERVL 1626 1785 -3211 578 283 93 21 chr4 46740289 46740579 -137548083 + HERV16 LTR ERVL 1871 2181 -2815 410 346 34 37 chr4 46740581 46740879 -137547783 + HERV16 LTR ERVL 2136 2432 -2564 633 363 32 11 chr4 46740927 46741427 -137547235 + HERV16 LTR ERVL 2541 3096 -1900 283 335 76 5 chr4 46741929 46742114 -137546548 + HERV16 LTR ERVL 3663 3860 -1904 13949 185 29 34 chr4 46742497 46746400 -137542262 + L1MA3 LINE L1 208 4128 -3596 5705 26 0 0 chr4 46746400 46747062 -137541600 + L1PA3 LINE L1 5489 6150 -5 13949 185 29 34 chr4 46747062 46747760 -137540902 + L1MA3 LINE L1 4128 4828 -2896 189 74 0 0 chr4 46747760 46747787 -137540875 + (CAA)n Simple_repeat Simple_repeat 2 28 0 13949 185 29 34 chr4 46747787 46750377 -137538285 + L1MA3 LINE L1 4828 7721 -3 1278 264 57 28 chr4 46750671 46751213 -137537449 + L1ME2 LINE L1 5605 6162 -2 409 223 121 13 chr4 46751217 46751374 -137537288 + L1ME3A LINE L1 5984 6157 -13 25 31 0 0 chr4 46751374 46751406 -137537256 + AT_rich Low_complexity Low_complexity 1 32 0 225 65 0 0 chr4 46752085 46752116 -137536546 + (CAT)n Simple_repeat Simple_repeat 3 33 0 629 229 99 50 chr4 46752271 46752472 -137536190 - MER20 DNA MER1_type -8 211 1 224 340 40 13 chr4 46752529 46752646 -137536016 + MIR SINE MIR 29 154 -108 3806 164 45 18 chr4 46752997 46753628 -137535034 + Tigger2 DNA MER2_type 1 656 -2062 2420 59 7 0 chr4 46753628 46753933 -137534729 + AluY SINE Alu 1 307 -4 3806 164 45 18 chr4 46753933 46754038 -137534624 + Tigger2 DNA MER2_type 656 757 -1961 1198 184 40 12 chr4 46754093 46754343 -137534319 + Tigger2 DNA MER2_type 2452 2708 -10 1678 235 25 43 chr4 46754484 46754998 -137533664 + MLT1D LTR MaLR 1 505 0 878 216 12 3 chr4 46755337 46755579 -137533083 + MER2 DNA MER2_type 27 338 -7 2112 113 59 34 chr4 46757655 46758010 -137530652 - THE1B LTR MaLR 0 364 1 24 32 0 0 chr4 46758505 46758536 -137530126 + AT_rich Low_complexity Low_complexity 1 31 0 2002 188 13 61 chr4 46758628 46759106 -137529556 - MER31B LTR ERV1 0 466 12 362 322 114 15 chr4 46759154 46759418 -137529244 + L2 LINE L2 2835 3124 -189 813 161 0 0 chr4 46759419 46759568 -137529094 + CT-rich Low_complexity Low_complexity 1 149 0 1825 134 0 38 chr4 46759568 46759859 -137528803 - AluSx SINE Alu -31 281 2 191 111 0 28 chr4 46759900 46759936 -137528726 + (TA)n Simple_repeat Simple_repeat 2 36 0 242 304 22 0 chr4 46759938 46760030 -137528632 + L2 LINE L2 3146 3239 -74 27 73 0 0 chr4 46760946 46761001 -137527661 + AT_rich Low_complexity Low_complexity 1 55 0 34 34 0 17 chr4 46761185 46761206 -137527456 + AT_rich Low_complexity Low_complexity 1 21 -37 1707 166 29 0 chr4 46761206 46761484 -137527178 - AluSx SINE Alu -26 286 1 34 34 0 17 chr4 46761484 46761521 -137527141 + AT_rich Low_complexity Low_complexity 21 58 0 23 92 0 0 chr4 46761631 46761696 -137526966 + AT_rich Low_complexity Low_complexity 1 65 0 236 234 125 16 chr4 46762824 46762888 -137525774 - L2 LINE L2 -16 3256 3186 278 276 171 33 chr4 46762936 46763088 -137525574 - MIR SINE MIR 0 262 90 3913 112 71 31 chr4 46763424 46763978 -137524684 - L1PA16 LINE L1 0 6166 5579 1924 139 14 0 chr4 46763978 46764273 -137524389 + AluSq SINE Alu 1 299 -14 3913 112 71 31 chr4 46764273 46764398 -137524264 - L1PA16 LINE L1 -587 5579 5460 24 32 0 0 chr4 46764510 46764541 -137524121 + AT_rich Low_complexity Low_complexity 1 31 0 285 182 0 0 chr4 46764563 46764618 -137524044 + (TATATG)n Simple_repeat Simple_repeat 2 56 0 471 347 23 0 chr4 46764791 46764964 -137523698 - MIR SINE MIR -2 260 84 22 0 0 0 chr4 46765170 46765192 -137523470 + AT_rich Low_complexity Low_complexity 1 22 0 228 296 12 0 chr4 46766029 46766110 -137522552 + A-rich Low_complexity Low_complexity 2 83 0 1068 287 78 46 chr4 46766974 46768498 -137520164 + L1ME3A LINE L1 4385 5955 -215 1286 317 80 22 chr4 46768578 46769440 -137519222 - L1MEc LINE L1 -5451 945 34 26 0 0 0 chr4 46769751 46769777 -137518885 + AT_rich Low_complexity Low_complexity 1 26 0 237 320 46 39 chr4 46769814 46769967 -137518695 + MIR SINE MIR 20 173 -89 616 130 9 9 chr4 46771147 46771255 -137517407 - L1PA13 LINE L1 -7 6156 6049 311 255 72 56 chr4 46771543 46771919 -137516743 - L1M4b LINE L1 -3029 3928 3547 369 269 81 75 chr4 46771927 46772328 -137516334 - L1M4b LINE L1 -4898 2240 1843 2232 96 0 0 chr4 46772328 46772621 -137516041 - AluY SINE Alu -18 293 1 369 269 81 75 chr4 46772621 46772903 -137515759 - L1M4b LINE L1 -5295 1843 1379 4542 108 0 42 chr4 46772989 46773728 -137514934 + L1PB1 LINE L1 5438 6145 -6 219 69 0 0 chr4 46773740 46773769 -137514893 + (TG)n Simple_repeat Simple_repeat 2 30 0 354 273 0 0 chr4 46774140 46774217 -137514445 + AluJ/FRAM SINE Alu 222 298 -4 3353 134 23 4 chr4 46774605 46775119 -137513543 + MER1A DNA MER1_type 4 527 0 208 158 35 0 chr4 46776137 46776194 -137512468 + (TA)n Simple_repeat Simple_repeat 2 60 0 263 399 7 14 chr4 46776325 46776468 -137512194 + L2 LINE L2 57 198 -3116 11684 165 40 5 chr4 46776588 46779648 -137509014 + L1PB1 LINE L1 888 4057 -2805 3748 132 132 84 chr4 46779658 46780932 -137507730 - pTR5 LTR ERV1 0 2438 171 8057 188 31 10 chr4 46780932 46781979 -137506683 + L1PB1 LINE L1 4063 5086 -1781 186 43 0 0 chr4 46781979 46782002 -137506660 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 8057 188 31 10 chr4 46782002 46783349 -137505313 + L1PB1 LINE L1 5086 6403 -464 270 0 0 0 chr4 46783349 46783379 -137505283 + (TA)n Simple_repeat Simple_repeat 1 30 0 * 414 0 0 0 chr4 46783378 46783424 -137505238 + (CA)n Simple_repeat Simple_repeat 2 47 0 8057 188 31 10 chr4 46783379 46783775 -137504887 + L1PB1 LINE L1 6403 6864 -3 912 210 51 0 chr4 46783781 46783957 -137504705 - MER70A LTR ERVL -84 388 204 10905 202 19 8 chr4 46783961 46786003 -137502659 - ERVL-B3 LTR ERVL -1889 3875 1812 5179 244 40 23 chr4 46786677 46788351 -137500311 - ERVL-B3 LTR ERVL -3870 1784 82 1130 161 134 9 chr4 46788351 46788568 -137500094 - MSTB LTR MaLR -15 411 168 302 309 0 10 chr4 46788584 46788681 -137499981 - L1MC4 LINE L1 -1337 6705 6610 1095 226 42 38 chr4 46788691 46789003 -137499659 - MLT2B3 LTR ERVL -40 498 216 276 247 49 0 chr4 46789113 46789194 -137499468 + L1MA6 LINE L1 3036 3120 -3026 2962 189 26 4 chr4 46789206 46790339 -137498323 + L1MA6 LINE L1 4691 5848 -452 322 310 99 21 chr4 46792488 46792730 -137495932 + L1M4 LINE L1 5287 5547 -627 236 222 14 0 chr4 46793153 46793225 -137495437 + CT-rich Low_complexity Low_complexity 1 73 0 23 0 0 0 chr4 46793501 46793524 -137495138 + AT_rich Low_complexity Low_complexity 1 23 0 334 92 15 15 chr4 46793579 46793644 -137495018 + (CA)n Simple_repeat Simple_repeat 2 66 0 317 264 0 0 chr4 46794075 46794181 -137494481 + (TA)n Simple_repeat Simple_repeat 1 106 0 21 71 0 0 chr4 46794356 46794398 -137494264 + AT_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chr4 46798637 46798662 -137490000 + AT_rich Low_complexity Low_complexity 1 25 0 21 57 0 0 chr4 46804019 46804054 -137484608 + AT_rich Low_complexity Low_complexity 1 35 0 388 278 0 0 chr4 46804266 46804338 -137484324 + Tigger3(Golem) DNA MER2_type 9 80 -2949 515 208 10 0 chr4 46804466 46804562 -137484100 + Tigger3(Golem) DNA MER2_type 2919 3015 -14 339 25 0 0 chr4 46804604 46804644 -137484018 + (TG)n Simple_repeat Simple_repeat 1 40 0 1970 189 8 34 chr4 46804663 46805098 -137483564 + THE1-int LTR MaLR 635 1135 -516 2618 111 3 0 chr4 46809827 46810204 -137478458 + L1PA13 LINE L1 5783 6160 -3 261 278 113 46 chr4 46810242 46810393 -137478269 + LTR37B LTR ERV1 4 164 -304 371 267 57 29 chr4 46810507 46810717 -137477945 + LTR37B LTR ERV1 201 416 -52 26 82 0 0 chr4 46813907 46813968 -137474694 + AT_rich Low_complexity Low_complexity 1 61 0 21 0 0 0 chr4 46813981 46814002 -137474660 + AT_rich Low_complexity Low_complexity 1 21 0 229 185 12 12 chr4 46814003 46814084 -137474578 + (TTTAA)n Simple_repeat Simple_repeat 5 85 0 288 0 0 0 chr4 46826383 46826415 -137462247 + (CA)n Simple_repeat Simple_repeat 2 33 0 39 60 0 0 chr4 46826850 46826917 -137461745 + AT_rich Low_complexity Low_complexity 1 67 0 367 238 0 28 chr4 46827128 46827271 -137461391 + (CATATA)n Simple_repeat Simple_repeat 3 141 0 1430 223 0 10 chr4 46827604 46827905 -137460757 + AluJo SINE Alu 3 300 -12 276 30 0 0 chr4 46827908 46827941 -137460721 + (GGAA)n Simple_repeat Simple_repeat 4 36 0 2948 152 27 10 chr4 46828043 46830117 -137458545 - L1PBa LINE L1 -3408 3454 1297 198 0 0 0 chr4 46832167 46832189 -137456473 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 747 307 64 3 chr4 46832745 46833028 -137455634 + MLT1H LTR MaLR 5 304 -245 604 150 0 17 chr4 46833171 46833291 -137455371 + (GGAA)n Simple_repeat Simple_repeat 1 118 0 2311 203 34 28 chr4 46833335 46834009 -137454653 - LTR27 LTR ERV1 -1 635 3 2122 130 61 9 chr4 46834315 46834661 -137454001 - THE1B LTR MaLR 0 364 1 11115 100 20 1 chr4 46834661 46836210 -137452452 - THE1B-int LTR MaLR 0 1580 2 2231 133 34 11 chr4 46836211 46836565 -137452097 - THE1B LTR MaLR 0 364 3 24 0 0 0 chr4 46837516 46837540 -137451122 + AT_rich Low_complexity Low_complexity 1 24 0 204 111 0 0 chr4 46837615 46837651 -137451011 + (TA)n Simple_repeat Simple_repeat 2 37 0 350 143 26 65 chr4 46837690 46837767 -137450895 + Tigger2 DNA MER2_type 1 74 -2644 * 1766 172 32 98 chr4 46837754 46838040 -137450622 + Tigger2 DNA MER2_type 2275 2519 -199 2029 150 0 0 chr4 46838040 46838340 -137450322 + AluSq SINE Alu 1 300 -13 1766 172 32 98 chr4 46838340 46838525 -137450137 + Tigger2 DNA MER2_type 2519 2715 -3 252 59 0 0 chr4 46838527 46838561 -137450101 + (TG)n Simple_repeat Simple_repeat 2 35 0 255 234 53 31 chr4 46839158 46839357 -137449305 + L1MEc LINE L1 906 1088 -5031 1958 104 61 0 chr4 46839381 46839660 -137449002 + AluSx SINE Alu 10 305 -7 484 319 60 52 chr4 46839810 46840177 -137448485 + L1MEc LINE L1 1096 1665 -4645 39 38 0 0 chr4 46840513 46840566 -137448096 + AT_rich Low_complexity Low_complexity 1 53 0 426 353 84 21 chr4 46840943 46841181 -137447481 + MIR SINE MIR 10 262 0 21 0 0 0 chr4 46841392 46841413 -137447249 + AT_rich Low_complexity Low_complexity 1 21 0 1349 267 167 35 chr4 46841601 46842351 -137446311 + L2 LINE L2 2215 3068 -245 182 333 39 0 chr4 46842478 46842529 -137446133 + L2 LINE L2 3216 3268 -4 207 0 0 0 chr4 46842545 46842568 -137446094 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 969 110 0 0 chr4 46842567 46842712 -137445950 + (TA)n Simple_repeat Simple_repeat 1 145 0 2343 165 69 22 chr4 46843129 46843620 -137445042 - L1MA5 LINE L1 -6 6294 5781 * 9038 186 23 4 chr4 46843608 46846276 -137442386 - L1PA15 LINE L1 -33 6132 3431 1963 242 15 17 chr4 46846293 46846814 -137441848 - L1M3de LINE L1 -4516 2137 1618 2734 318 67 17 chr4 46846822 46848033 -137440629 - L1M3de LINE L1 -5301 1352 4 21 36 0 0 chr4 46848179 46848207 -137440455 + AT_rich Low_complexity Low_complexity 1 28 0 295 192 0 0 chr4 46848244 46848296 -137440366 + Alu SINE Alu 1 52 -248 557 373 55 21 chr4 46848298 46848867 -137439795 - L1MEc LINE L1 -5717 679 92 322 234 21 11 chr4 46848946 46849040 -137439622 + L1M4 LINE L1 3595 3689 -2457 767 325 44 5 chr4 46849073 46849501 -137439161 + L1M4 LINE L1 4130 4574 -1572 2713 105 3 5 chr4 46849582 46849972 -137438690 - L1PA10 LINE L1 -3 6165 5777 2417 204 19 34 chr4 46851076 46851611 -137437051 + MER68 LTR ERV1 36 562 0 210 71 0 0 chr4 46851617 46851645 -137437017 + (TC)n Simple_repeat Simple_repeat 2 29 0 * 235 182 26 0 chr4 46851644 46851721 -137436941 + (TA)n Simple_repeat Simple_repeat 2 80 0 34 24 0 0 chr4 46851859 46851900 -137436762 + AT_rich Low_complexity Low_complexity 1 41 0 232 188 47 0 chr4 46851968 46852032 -137436630 + T-rich Low_complexity Low_complexity 5 71 0 398 292 68 28 chr4 46852238 46852488 -137436174 + L1MC/D LINE L1 993 1252 -4867 242 329 55 9 chr4 46852634 46852853 -137435809 + L1MC/D LINE L1 1445 1673 -4637 240 161 0 65 chr4 46853245 46853307 -137435355 - L1MDa LINE L1 -3904 2636 2579 6430 84 2 0 chr4 46853425 46854633 -137434029 - L1PA7 LINE L1 -16 6138 4935 24 85 0 0 chr4 46855031 46855090 -137433572 + AT_rich Low_complexity Low_complexity 1 59 0 1050 258 31 11 chr4 46855865 46856286 -137432376 - MSTD LTR MaLR 0 396 24 724 466 12 15 chr4 46858575 46858916 -137429746 - L1M4 LINE L1 -561 5623 5284 1549 173 100 0 chr4 46860608 46860938 -137427724 - MLT1A1 LTR MaLR 0 365 3 405 344 35 40 chr4 46861371 46861515 -137427147 - MIR SINE MIR -2 260 116 2080 148 0 0 chr4 46861515 46861820 -137426842 + AluSx SINE Alu 1 305 -7 405 344 35 40 chr4 46861820 46861902 -137426760 - MIR SINE MIR -146 116 35 2180 108 3 3 chr4 46862407 46862714 -137425948 + AluSg SINE Alu 1 307 -3 1080 231 97 59 chr4 46862968 46863512 -137425150 - MER34B LTR ERV1 0 565 11 561 103 37 0 chr4 46864360 46864467 -137424195 + (TCTA)n Simple_repeat Simple_repeat 4 114 0 1947 260 23 19 chr4 46864826 46865476 -137423186 + L1MC/D LINE L1 3736 4388 -1741 1394 219 21 0 chr4 46865499 46865782 -137422880 + AluJb SINE Alu 17 305 -7 966 258 37 61 chr4 46865784 46866245 -137422417 + L1MC/D LINE L1 4393 4842 -1287 5996 204 36 63 chr4 46866259 46867917 -137420745 - L1MC3 LINE L1 -11 7774 6163 3659 236 43 64 chr4 46867914 46869696 -137418966 - L1MCb LINE L1 -4509 2055 222 * 1903 160 0 0 chr4 46869696 46870013 -137418649 + AluSx SINE Alu 1 317 0 3659 236 43 64 chr4 46870013 46870230 -137418432 - L1MCb LINE L1 -6342 222 2 1642 225 29 118 chr4 46870254 46871056 -137417606 + L1MC/D LINE L1 4832 5552 -822 192 97 0 0 chr4 46871056 46871087 -137417575 + (CA)n Simple_repeat Simple_repeat 2 32 0 1642 225 29 118 chr4 46871087 46871321 -137417341 + L1MC/D LINE L1 5552 5805 -569 245 182 0 0 chr4 46871356 46871400 -137417262 + L1MC/D LINE L1 5780 5823 -536 1994 177 46 7 chr4 46871514 46871949 -137416713 + L1MD1 LINE L1 5783 6234 -8 542 173 31 24 chr4 46871971 46872098 -137416564 + Looper DNA T2_type 1431 1558 0 291 306 38 51 chr4 46872838 46872995 -137415667 - MIR3 SINE MIR -8 200 46 266 87 0 0 chr4 46874265 46874311 -137414351 + LTR66 LTR ERVL 394 439 -171 343 221 13 26 chr4 46874354 46874431 -137414231 + MIR SINE MIR 76 151 -111 2330 63 3 7 chr4 46874960 46875262 -137413400 + AluYb8 SINE Alu 18 318 0 979 175 12 0 chr4 46875265 46875431 -137413231 + AluSg/x SINE Alu 127 294 -16 224 262 16 16 chr4 46875634 46875695 -137412967 + (TATATG)n Simple_repeat Simple_repeat 5 65 0 1954 120 21 52 chr4 46875695 46876077 -137412585 + L1PB2 LINE L1 5782 6151 0 7880 12 0 0 chr4 46876701 46877875 -137410787 + L1PA2 LINE L1 4981 6152 -3 202 302 20 7 chr4 46878968 46879117 -137409545 + (TA)n Simple_repeat Simple_repeat 2 152 0 373 391 78 9 chr4 46879149 46879484 -137409178 + L2 LINE L2 2396 2753 -561 867 317 18 9 chr4 46879653 46879981 -137408681 - LTR16A LTR ERVL -8 442 112 207 407 7 27 chr4 46880060 46880210 -137408452 + L2 LINE L2 2935 3081 -191 219 336 73 36 chr4 46880287 46880397 -137408265 + L2 LINE L2 3200 3313 0 31 68 0 0 chr4 46882226 46882285 -137406377 + AT_rich Low_complexity Low_complexity 1 59 0 13272 223 42 17 chr4 46882623 46885841 -137402821 - L1PB1 LINE L1 0 6867 3733 422 37 0 0 chr4 46885841 46885895 -137402767 - L1PA3 LINE L1 -3 6152 6099 13272 223 42 17 chr4 46885895 46889146 -137399516 - L1PB1 LINE L1 -3134 3733 6 1374 181 107 15 chr4 46889157 46889428 -137399234 - AluJb SINE Alu -16 296 1 228 266 106 18 chr4 46889477 46889590 -137399072 - MIR SINE MIR -29 233 111 1108 249 94 26 chr4 46890295 46890637 -137398025 + MLT1A1 LTR MaLR 1 365 0 242 381 21 0 chr4 46890982 46891079 -137397583 - L2 LINE L2 -188 3084 2986 2663 92 0 0 chr4 46891670 46892038 -137396624 - L1P LINE L1 -861 5285 4918 4376 94 0 0 chr4 46892038 46892640 -137396022 + L1PA7 LINE L1 5552 6154 0 26 0 0 0 chr4 46892640 46892666 -137395996 + AT_rich Low_complexity Low_complexity 1 26 0 21 57 0 0 chr4 46892735 46892770 -137395892 + AT_rich Low_complexity Low_complexity 1 35 0 255 278 109 43 chr4 46893596 46893767 -137394895 + MIR3 SINE MIR 8 196 -12 1766 203 65 30 chr4 46894027 46894490 -137394172 + MLT1D LTR MaLR 27 505 0 215 315 136 25 chr4 46895733 46895895 -137392767 - MIR SINE MIR -14 248 69 732 231 0 25 chr4 46896991 46897151 -137391511 - FRAM SINE Alu -20 156 1 2347 114 22 6 chr4 46897636 46897994 -137390668 + THE1B LTR MaLR 1 364 0 1975 136 0 3 chr4 46898286 46898580 -137390082 + AluSc SINE Alu 1 293 -16 267 315 19 9 chr4 46899128 46899236 -137389426 + MIR3 SINE MIR 99 207 -1 1701 209 50 92 chr4 46901784 46902362 -137386300 + MLT2B3 LTR ERVL 1 554 0 1282 195 0 88 chr4 46902375 46902703 -137385959 - AluJo SINE Alu -1 301 3 9138 182 32 9 chr4 46902969 46903328 -137385334 - L1PB1 LINE L1 0 6151 5802 342 0 0 0 chr4 46903328 46903366 -137385296 + (TA)n Simple_repeat Simple_repeat 2 39 0 9138 182 32 9 chr4 46903366 46904653 -137384009 - L1PB1 LINE L1 -349 5802 4546 1845 151 0 36 chr4 46904653 46904958 -137383704 - AluSg SINE Alu -14 296 3 9138 182 32 9 chr4 46904958 46906316 -137382346 - L1PB1 LINE L1 -1605 4546 3073 22 0 0 0 chr4 46906482 46906504 -137382158 + AT_rich Low_complexity Low_complexity 1 22 0 2146 126 46 5 chr4 46906823 46907196 -137381466 - L1MA5A LINE L1 -3 6294 5907 1334 297 130 19 chr4 46907196 46907812 -137380850 + L2 LINE L2 1758 2441 -873 208 363 59 49 chr4 46908089 46908191 -137380471 - L2 LINE L2 -8 3264 3162 28 48 0 0 chr4 46909290 46909332 -137379330 + AT_rich Low_complexity Low_complexity 1 42 0 530 208 0 62 chr4 46911688 46911818 -137376844 - MLT1E LTR MaLR 0 593 472 837 244 139 96 chr4 46912089 46912598 -137376064 - MLT1E1 LTR MaLR -122 532 2 7267 85 11 1 chr4 46914232 46915245 -137373417 + L1P LINE L1 4058 5080 -1066 6564 77 17 0 chr4 46915245 46916418 -137372244 + L1PA6 LINE L1 4966 6152 -2 489 234 116 75 chr4 46916418 46916789 -137371873 - HsTC2 DNA Tc2 -67 1831 1270 834 275 166 18 chr4 46916793 46917233 -137371429 - HsTC2 DNA Tc2 -1391 507 3 3535 165 117 7 chr4 46917377 46918121 -137370541 - LTR1B LTR ERV1 0 826 1 2542 133 33 5 chr4 46918251 46918460 -137370202 + L1P5 LINE L1 5353 5555 -599 2481 62 3 3 chr4 46918460 46918767 -137369895 - AluY SINE Alu -4 307 1 2542 133 33 5 chr4 46918767 46918984 -137369678 + L1P5 LINE L1 5555 5791 -363 398 270 77 52 chr4 46919177 46919540 -137369122 + L1M4 LINE L1 2663 3034 -3112 2626 153 11 42 chr4 46919543 46919894 -137368768 - L1 LINE L1 -1482 4664 4335 2078 116 0 31 chr4 46919894 46920214 -137368448 - AluY SINE Alu -1 310 1 2626 153 11 42 chr4 46920214 46920411 -137368251 - L1 LINE L1 -1811 4335 4133 313 260 110 8 chr4 46920506 46920633 -137368029 + L1M4 LINE L1 3179 3318 -2828 643 306 81 30 chr4 46921329 46921662 -137367000 - LTR33 LTR ERVL 0 521 172 526 242 108 38 chr4 46921861 46922047 -137366615 + MER58A DNA MER1_type 11 209 -15 221 253 0 13 chr4 46923676 46923755 -137364907 + A-rich Low_complexity Low_complexity 5 82 0 25 75 0 0 chr4 46924036 46924089 -137364573 + AT_rich Low_complexity Low_complexity 1 53 0 24 32 0 0 chr4 46924231 46924262 -137364400 + AT_rich Low_complexity Low_complexity 1 31 0 13220 45 3 4 chr4 46924262 46926690 -137361972 - L1PA5 LINE L1 -1 6153 3722 243 332 49 34 chr4 46927015 46927220 -137361442 + L1MC/D LINE L1 5703 5910 -1898 386 43 58 0 chr4 46927306 46927375 -137361287 + (TAGA)n Simple_repeat Simple_repeat 2 74 0 184 320 20 20 chr4 46927759 46927859 -137360803 + MER5A DNA MER1_type 7 106 -83 376 301 43 84 chr4 46928037 46928359 -137360303 - MLT1I LTR MaLR -17 392 84 25 0 0 0 chr4 46928488 46928513 -137360149 + AT_rich Low_complexity Low_complexity 1 25 0 242 203 0 29 chr4 46928620 46928689 -137359973 + CT-rich Low_complexity Low_complexity 1 67 0 510 289 96 15 chr4 46928839 46929036 -137359626 + MIR SINE MIR 37 249 -13 21 57 0 0 chr4 46929435 46929470 -137359192 + AT_rich Low_complexity Low_complexity 1 35 0 2115 128 0 0 chr4 46931655 46931952 -137356710 - AluSx SINE Alu -11 301 5 554 243 81 67 chr4 46932054 46932264 -137356398 + MLT1I LTR MaLR 195 407 -2 228 67 0 0 chr4 46932327 46932357 -137356305 + (TA)n Simple_repeat Simple_repeat 2 31 0 18449 47 0 1 chr4 46932403 46935487 -137353175 + L1PA4 LINE L1 3060 6147 -8 1759 200 107 69 chr4 46935522 46936014 -137352648 + MLT2B3 LTR ERVL 1 514 -40 624 73 9 27 chr4 46936014 46936124 -137352538 + (TCTA)n Simple_repeat Simple_repeat 3 110 0 1759 200 107 69 chr4 46936124 46936135 -137352527 + MLT2B3 LTR ERVL 514 523 -31 1281 178 22 30 chr4 46937527 46937796 -137350866 - AluJo SINE Alu -9 303 37 418 351 181 14 chr4 46938798 46939296 -137349366 - L1MC4a LINE L1 -1901 5907 5327 21 82 0 0 chr4 46939357 46939406 -137349256 + AT_rich Low_complexity Low_complexity 1 49 0 316 276 57 24 chr4 46939473 46939596 -137349066 - L1MC5 LINE L1 -44 7917 7791 21 0 0 0 chr4 46940162 46940183 -137348479 + AT_rich Low_complexity Low_complexity 1 21 0 10918 213 51 13 chr4 46940227 46940343 -137348319 + L1MA4A LINE L1 2314 2424 -3879 336 102 0 0 chr4 46940343 46940392 -137348270 + (TA)n Simple_repeat Simple_repeat 1 49 0 10918 213 51 13 chr4 46940392 46943954 -137344708 + L1MA4A LINE L1 2424 6121 -182 338 250 11 0 chr4 46943958 46944050 -137344612 + L1MA4A LINE L1 6188 6280 -23 35 63 0 0 chr4 46944906 46944969 -137343693 + AT_rich Low_complexity Low_complexity 1 63 0 902 155 11 46 chr4 46946044 46946218 -137342444 + FRAM SINE Alu 1 160 -16 555 78 0 0 chr4 46946218 46946295 -137342367 + (GGAA)n Simple_repeat Simple_repeat 1 77 0 370 299 56 14 chr4 46946359 46946503 -137342159 - MIR SINE MIR -16 246 97 21 0 0 0 chr4 46946942 46946963 -137341699 + AT_rich Low_complexity Low_complexity 1 21 0 790 202 48 40 chr4 46947075 46947327 -137341335 - PABL_B LTR ERV1 0 667 414 229 349 16 16 chr4 46947487 46947613 -137341049 - PABL_A LTR ERV1 -463 197 72 1072 162 94 42 chr4 46948174 46948305 -137340357 + MER33 DNA MER1_type 1 124 -2461 1886 133 10 7 chr4 46948305 46948606 -137340056 + AluSx SINE Alu 1 302 -10 1072 162 94 42 chr4 46948606 46948782 -137339880 + MER33 DNA MER1_type 124 324 0 1335 210 3 46 chr4 46948803 46949127 -137339535 - L1MA10 LINE L1 -8 6326 6017 2940 56 3 0 chr4 46949173 46949546 -137339116 - L1PA7 LINE L1 -14 6140 5767 8141 258 75 19 chr4 46949879 46953788 -137334874 - L1MC1 LINE L1 -431 6320 2195 1453 127 4 21 chr4 46953814 46954050 -137334612 - Tigger5 DNA MER2_type -3 2320 2089 1005 216 133 31 chr4 46954056 46954327 -137334335 - L1MC1 LINE L1 -4851 1194 1048 1559 179 82 20 chr4 46954327 46954680 -137333982 - THE1C LTR MaLR 0 375 1 1005 216 133 31 chr4 46954680 46954806 -137333856 - L1MC1 LINE L1 -4997 1048 936 290 307 159 0 chr4 46954866 46955029 -137333633 - MIR SINE MIR -1 261 73 31 68 0 0 chr4 46955274 46955333 -137333329 + AT_rich Low_complexity Low_complexity 1 59 0 28 0 0 0 chr4 46955663 46955691 -137332971 + AT_rich Low_complexity Low_complexity 1 28 0 28003 37 2 0 chr4 46956158 46960401 -137328261 + L1PA3 LINE L1 1905 6155 0 22 35 0 0 chr4 46960638 46960667 -137327995 + AT_rich Low_complexity Low_complexity 1 29 0 1911 143 0 0 chr4 46960904 46961209 -137327453 + AluSg SINE Alu 5 309 0 21 0 0 0 chr4 46961690 46961711 -137326951 + AT_rich Low_complexity Low_complexity 1 21 0 210 37 0 0 chr4 46961994 46962021 -137326641 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1711 158 3 7 chr4 46962601 46962899 -137325763 + AluYb8 SINE Alu 22 318 0 1184 121 12 0 chr4 46962902 46963068 -137325594 + AluSg/x SINE Alu 127 294 -16 438 276 49 16 chr4 46963237 46963360 -137325302 - MIR SINE MIR -112 150 24 1376 123 0 18 chr4 46963364 46963592 -137325070 + L1PA8 LINE L1 5939 6162 -10 1937 163 14 20 chr4 46963777 46964126 -137324536 - MER7A DNA MER2_type 0 346 2 734 104 43 18 chr4 46964909 46965072 -137323590 + GA-rich Low_complexity Low_complexity 2 168 0 210 32 0 32 chr4 46965083 46965114 -137323548 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 321 75 0 0 chr4 46965256 46965296 -137323366 - MER85 DNA T2_type -1 138 99 733 322 45 54 chr4 46965356 46965797 -137322865 + MLT1J LTR MaLR 1 437 -74 264 301 59 35 chr4 46965890 46966146 -137322516 + L1MC/D LINE L1 5257 5518 -815 2206 240 58 16 chr4 46966251 46966942 -137321720 + L1MC4a LINE L1 6856 7575 -233 26 64 0 0 chr4 46967954 46968001 -137320661 + AT_rich Low_complexity Low_complexity 1 47 0 2400 108 6 0 chr4 46968002 46968363 -137320299 - L1PB1 LINE L1 -4 6147 5785 235 182 76 15 chr4 46968387 46968453 -137320209 - L1MC4 LINE L1 -1339 6703 6634 * 531 122 12 0 chr4 46968426 46968508 -137320154 - L1PB1 LINE L1 -360 5791 5709 2818 249 45 7 chr4 46968508 46969552 -137319110 + L1MB7 LINE L1 4479 5564 -610 * 4772 174 30 36 chr4 46969546 46970919 -137317743 + L1MA7 LINE L1 4489 5860 -431 2792 107 61 5 chr4 46970919 46971359 -137317303 + MER4C LTR ERV1 1 465 0 4772 174 30 36 chr4 46971359 46971788 -137316874 + L1MA7 LINE L1 5860 6290 -1 22 0 0 0 chr4 46971788 46971810 -137316852 + AT_rich Low_complexity Low_complexity 1 22 0 589 212 93 0 chr4 46971819 46971970 -137316692 + L1MB7 LINE L1 5550 5714 -470 * 5169 159 36 8 chr4 46971968 46972338 -137316324 - L1PA15 LINE L1 -5 6811 6453 421 99 25 49 chr4 46972338 46972419 -137316243 + MADE1 DNA Mariner 2 80 0 5169 159 36 8 chr4 46972419 46973282 -137315380 - L1PA15 LINE L1 -363 6453 5548 2486 94 14 20 chr4 46973289 46973641 -137315021 + THE1B LTR MaLR 15 364 0 12247 219 14 16 chr4 46973647 46975721 -137312941 - L1PA15 LINE L1 -1253 5544 3479 1699 23 0 28 chr4 46975721 46975936 -137312726 - L1PA3 LINE L1 0 6155 5947 12247 219 14 16 chr4 46975936 46976836 -137311826 - L1PA15 LINE L1 -3318 3479 2578 367 276 32 8 chr4 46976819 46976942 -137311720 - L1PA15 LINE L1 -5393 1394 1269 * 1689 239 14 46 chr4 46976942 46977439 -137311223 + L1MB7 LINE L1 5702 6182 -2 31 45 0 30 chr4 46977947 46977969 -137310693 + AT_rich Low_complexity Low_complexity 1 22 -43 2217 208 149 19 chr4 46977969 46978588 -137310074 - LTR34 LTR ERV1 0 699 1 31 45 0 30 chr4 46978588 46978632 -137310030 + AT_rich Low_complexity Low_complexity 22 65 0 446 253 20 48 chr4 46979838 46979984 -137308678 - MER58B DNA MER1_type 0 341 200 1567 233 28 6 chr4 46980151 46980507 -137308155 - MLT1A1 LTR MaLR -1 364 1 3004 237 72 80 chr4 46980512 46981236 -137307426 - MLT1A1-int LTR MaLR -5 1730 1002 3297 193 69 14 chr4 46981236 46981978 -137306684 - LTR39 LTR ERV1 0 783 1 3004 237 72 80 chr4 46981978 46982893 -137305769 - MLT1A1-int LTR MaLR -733 1002 2 1603 236 21 0 chr4 46982914 46983249 -137305413 - MLT1A1 LTR MaLR -23 342 1 1751 197 144 3 chr4 46983309 46983690 -137304972 - LTR47A LTR ERVL -13 439 5 703 219 79 30 chr4 46983750 46984057 -137304605 - LTR35 LTR ERV1 0 669 192 2783 200 6 21 chr4 46984626 46985289 -137303373 - MER44D DNA MER2_type 0 605 2 2008 276 31 33 chr4 46986077 46986188 -137302474 + L1M2 LINE L1 17 127 -7438 1548 80 9 31 chr4 46986188 46986414 -137302248 + AluY SINE Alu 77 297 -14 2008 276 31 33 chr4 46986414 46986940 -137301722 + L1M2 LINE L1 127 653 -6912 1542 203 64 88 chr4 46986940 46987437 -137301225 - LTR8A LTR ERV1 0 727 243 23 33 0 0 chr4 47038679 47038709 -137249953 + AT_rich Low_complexity Low_complexity 1 30 0 291 28 0 0 chr4 47039112 47039148 -137249514 + (T)n Simple_repeat Simple_repeat 1 36 0 876 238 55 64 chr4 47039287 47039436 -137249226 - MLT1A1 LTR MaLR -2 652 503 1013 227 58 37 chr4 47039436 47039731 -137248931 + AluJo SINE Alu 2 302 0 876 238 55 64 chr4 47039731 47040161 -137248501 - MLT1A1 LTR MaLR -151 503 14 373 296 125 31 chr4 47040162 47040547 -137248115 + L1M4 LINE L1 4572 4992 -1154 1611 241 14 32 chr4 47040713 47041145 -137247517 + L1M2 LINE L1 2920 3343 -4223 753 299 19 34 chr4 47041168 47041436 -137247226 - L1M2c LINE L1 -5165 1624 1361 1161 333 68 25 chr4 47041989 47042593 -137246069 - L1M2c LINE L1 -6154 635 6 991 230 44 0 chr4 47042641 47042845 -137245817 + Tigger3b DNA MER2_type 2 214 -1017 2646 73 0 5 chr4 47042845 47043215 -137245447 - L1PA7 LINE L1 -787 5359 4992 5507 90 4 1 chr4 47043215 47043988 -137244674 + L1PA7 LINE L1 5363 6138 -16 4635 145 87 26 chr4 47043996 47044025 -137244637 + Tigger3b DNA MER2_type 198 224 -2804 1878 158 39 18 chr4 47044025 47044355 -137244307 - MER1B DNA MER1_type 0 337 1 4635 145 87 26 chr4 47044355 47045299 -137243363 + Tigger3b DNA MER2_type 224 1231 0 27 49 0 0 chr4 47046020 47046061 -137242601 + AT_rich Low_complexity Low_complexity 1 41 0 1240 261 78 14 chr4 47046740 47047538 -137241124 - L1MEc LINE L1 -3701 2514 1703 514 266 0 0 chr4 47047548 47047661 -137241001 + FLAM_C SINE Alu 7 119 -24 273 98 0 0 chr4 47047661 47047702 -137240960 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 536 312 55 30 chr4 47047751 47048293 -137240369 - L1MEc LINE L1 -4752 1644 1089 5675 71 0 4 chr4 47048632 47049382 -137239280 - L1PA7 LINE L1 0 6154 5408 2373 108 5 5 chr4 47049382 47049765 -137238897 + L1P LINE L1 5031 5413 -741 473 274 133 6 chr4 47049765 47050082 -137238580 - Charlie1 DNA MER1_type -1896 865 509 180 0 0 0 chr4 47050252 47050272 -137238390 + (T)n Simple_repeat Simple_repeat 1 20 0 277 206 219 14 chr4 47050321 47050394 -137238268 - MLT1E LTR MaLR -499 94 7 1462 256 63 50 chr4 47050458 47051740 -137236922 + L1ME2 LINE L1 4651 5950 -214 658 152 45 15 chr4 47051737 47051869 -137236793 - L1MA8 LINE L1 -230 6061 5926 * 21 0 0 0 chr4 47052135 47052156 -137236506 + AT_rich Low_complexity Low_complexity 1 21 0 248 333 54 0 chr4 47052698 47052791 -137235871 - MIR SINE MIR -79 183 86 794 146 0 0 chr4 47052801 47052924 -137235738 + LTR69 LTR ERVL 2 124 -464 583 175 53 9 chr4 47052932 47053046 -137235616 + LTR69 LTR ERVL 225 343 -245 5961 40 18 3 chr4 47053046 47053820 -137234842 - L1P LINE L1 -2758 3388 2603 * 7372 37 0 1 chr4 47053806 47055071 -137233591 + L1PA5 LINE L1 4908 6171 0 1094 250 4 4 chr4 47055075 47055311 -137233351 + LTR69 LTR ERVL 343 578 -10 226 360 43 31 chr4 47055845 47056006 -137232656 + MIR SINE MIR 49 211 -51 1972 175 14 14 chr4 47056280 47056645 -137232017 - MLT1A1 LTR MaLR 0 365 1 435 308 128 19 chr4 47057214 47057425 -137231237 - MIR SINE MIR -8 254 21 564 238 45 78 chr4 47058056 47058325 -137230337 - L2 LINE L2 -7 3306 3047 796 197 167 1 chr4 47059399 47059597 -137229065 + MLT1D LTR MaLR 230 448 -57 211 344 21 11 chr4 47059715 47059808 -137228854 - MER5A DNA MER1_type -31 158 65 1971 123 13 3 chr4 47061354 47061663 -137226999 - AluSx SINE Alu 0 312 1 787 317 63 45 chr4 47061663 47062155 -137226507 - L2 LINE L2 -8 3305 2805 351 0 0 0 chr4 47062322 47062361 -137226301 + (TG)n Simple_repeat Simple_repeat 2 40 0 450 281 37 13 chr4 47063516 47063711 -137224951 - MLT1L LTR MaLR -44 558 347 324 375 51 13 chr4 47064178 47064413 -137224249 + MIR SINE MIR 17 260 -2 484 158 0 0 chr4 47065803 47065901 -137222761 - L1MA9 LINE L1 -8 6288 6186 335 211 67 11 chr4 47065907 47065997 -137222665 - L2 LINE L2 -1 3312 3218 4250 229 46 36 chr4 47066364 47067597 -137221065 + MER45R DNA AcHobo 333 1578 -3 383 223 86 57 chr4 47067662 47067837 -137220825 + MIR SINE MIR 45 224 -38 622 257 103 18 chr4 47067887 47068159 -137220503 - MER110 LTR ERV1 -28 463 169 247 155 24 131 chr4 47068256 47068340 -137220322 - MER110A LTR ERV1 -324 144 70 236 356 24 76 chr4 47069646 47069896 -137218766 - LTR16B LTR ERVL -227 237 1 310 339 16 0 chr4 47071093 47071214 -137217448 + CT-rich Low_complexity Low_complexity 2 124 0 300 356 44 36 chr4 47071996 47072271 -137216391 - LTR16B LTR ERVL -153 311 35 2385 56 38 3 chr4 47073028 47073347 -137215315 - L1PA7 LINE L1 -2 6152 5823 24 0 0 0 chr4 47074309 47074333 -137214329 + AT_rich Low_complexity Low_complexity 1 24 0 489 211 83 23 chr4 47076945 47077078 -137211584 + MER58C DNA MER1_type 67 207 -8 2538 61 0 0 chr4 47077078 47077389 -137211273 + AluY SINE Alu 1 311 0 1554 222 48 13 chr4 47077428 47077824 -137210838 - MLT1C LTR MaLR 0 467 58 233 313 30 53 chr4 47077953 47078084 -137210578 + L2 LINE L2 2964 3091 -222 24 77 0 0 chr4 47078555 47078607 -137210055 + AT_rich Low_complexity Low_complexity 1 52 0 22 0 0 0 chr4 47078698 47078720 -137209942 + AT_rich Low_complexity Low_complexity 1 22 0 3374 147 41 48 chr4 47078823 47079533 -137209129 + MER67C LTR ERV1 2 706 -4 1954 60 86 26 chr4 47079703 47079971 -137208691 - AluY SINE Alu -7 304 21 482 338 70 0 chr4 47080686 47080887 -137207775 + MIR SINE MIR 17 231 -31 22 0 0 0 chr4 47081215 47081237 -137207425 + AT_rich Low_complexity Low_complexity 1 22 0 546 272 84 71 chr4 47081271 47081723 -137206939 + MLT1H1 LTR MaLR 1 436 -106 29 28 0 0 chr4 47081987 47082023 -137206639 + AT_rich Low_complexity Low_complexity 1 36 0 1560 179 32 65 chr4 47082124 47082527 -137206135 + MLT1B LTR MaLR 1 390 0 313 219 27 0 chr4 47082717 47082790 -137205872 + LTR67 LTR ERVL 479 553 -4 219 298 244 15 chr4 47083202 47083333 -137205329 + MIR SINE MIR 48 208 -54 1853 128 22 22 chr4 47083386 47083699 -137204963 + AluSq SINE Alu 1 313 0 323 304 0 36 chr4 47085041 47085153 -137203509 - L2 LINE L2 -1 3312 3205 267 114 0 0 chr4 47085339 47085383 -137203279 + (TG)n Simple_repeat Simple_repeat 1 44 0 28 0 0 0 chr4 47085734 47085762 -137202900 + AT_rich Low_complexity Low_complexity 1 28 0 414 307 57 11 chr4 47086436 47086612 -137202050 - MIR SINE MIR -12 250 67 204 316 32 71 chr4 47086723 47086878 -137201784 - MIR SINE MIR -55 207 59 201 269 15 60 chr4 47087583 47087650 -137201012 + L2 LINE L2 3207 3270 -2 238 306 0 0 chr4 47088188 47088237 -137200425 - Alu SINE Alu -116 185 137 436 316 166 0 chr4 47088455 47088642 -137200020 + MIR SINE MIR 18 235 -27 317 288 0 0 chr4 47088644 47088724 -137199938 - MER116 DNA Mariner 0 80 1 232 284 34 23 chr4 47089190 47089278 -137199384 + LTR23 LTR ERV1 336 424 -13 415 333 0 0 chr4 47089897 47090032 -137198630 + GA-rich Low_complexity Low_complexity 2 136 0 24 53 0 0 chr4 47090041 47090079 -137198583 + AT_rich Low_complexity Low_complexity 1 38 0 2220 235 75 65 chr4 47090141 47090783 -137197879 - MER21B LTR ERV1 -11 852 199 738 23 0 0 chr4 47090783 47090870 -137197792 - L1PA5 LINE L1 -8 6146 6060 2220 235 75 65 chr4 47090870 47091071 -137197591 - MER21B LTR ERV1 -664 199 1 519 309 50 27 chr4 47091090 47091310 -137197352 + MIR SINE MIR 28 252 -10 27 29 0 0 chr4 47091339 47091373 -137197289 + AT_rich Low_complexity Low_complexity 1 34 0 1326 167 21 0 chr4 47091392 47091625 -137197037 + LTR24C LTR ERV1 398 635 0 336 290 131 36 chr4 47091626 47091987 -137196675 - MLT1J1 LTR MaLR -46 363 1 618 335 15 8 chr4 47092022 47092282 -137196380 - MLT1J LTR MaLR -247 264 3 1171 199 64 4 chr4 47094010 47094276 -137194386 - L1MA6 LINE L1 -2 6298 6017 * 1395 194 24 18 chr4 47094275 47094604 -137194058 - L1 LINE L1 -2042 5523 5193 40 21 0 0 chr4 47094614 47094661 -137194001 + AT_rich Low_complexity Low_complexity 1 47 0 5960 107 23 10 chr4 47094681 47095721 -137192941 - L1PA13 LINE L1 -4 6810 5785 1979 147 25 20 chr4 47095721 47096074 -137192588 - THE1A LTR MaLR 0 355 1 11035 113 11 1 chr4 47096074 47097637 -137191025 - THE1A-int LTR MaLR 0 1580 1 2212 130 11 11 chr4 47097637 47097992 -137190670 - THE1A LTR MaLR 0 355 1 5960 107 23 10 chr4 47097992 47098531 -137190131 - L1PA13 LINE L1 -1028 5786 5214 9460 194 15 11 chr4 47098636 47099653 -137189009 - L1PA13 LINE L1 -1606 5191 4161 207 0 0 0 chr4 47099653 47099676 -137188986 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 9460 194 15 11 chr4 47099676 47100620 -137188042 - L1PA13 LINE L1 -2636 4161 3222 1803 226 39 3 chr4 47100616 47100979 -137187683 - L1PA13 LINE L1 -6409 378 3 * 1685 203 0 3 chr4 47100996 47101301 -137187361 - AluJo SINE Alu -7 305 2 6016 236 26 17 chr4 47101302 47102157 -137186505 - L1 LINE L1 -2357 5208 4362 1936 181 3 11 chr4 47102157 47102533 -137186129 - L1PA16 LINE L1 0 6166 5794 6016 236 26 17 chr4 47102533 47103170 -137185492 - L1 LINE L1 -3203 4362 3695 2190 193 24 7 chr4 47103170 47103589 -137185073 + MSTB LTR MaLR 1 426 0 6016 236 26 17 chr4 47103589 47103990 -137184672 - L1 LINE L1 -3870 3695 3299 909 62 0 0 chr4 47104270 47104383 -137184279 - AluY SINE Alu -198 113 1 616 278 65 26 chr4 47104411 47104641 -137184021 - Charlie1 DNA MER1_type -2521 240 2 2318 89 0 13 chr4 47104846 47105159 -137183503 + AluY SINE Alu 1 309 -2 211 357 23 16 chr4 47105369 47105498 -137183164 + MIR SINE MIR 79 208 -54 214 198 70 12 chr4 47105528 47105614 -137183048 + (TTATG)n Simple_repeat Simple_repeat 2 92 0 368 304 100 32 chr4 47106037 47106257 -137182405 - MIR SINE MIR -3 259 25 3906 190 11 11 chr4 47106360 47107087 -137181575 + MER57-int LTR ERV1 6419 7145 -392 608 200 66 47 chr4 47107087 47107324 -137181338 + LTR54B LTR ERV1 6 249 -261 1201 170 45 34 chr4 47107349 47107481 -137181181 + MER57A LTR ERV1 133 262 -141 2922 138 88 0 chr4 47107481 47107994 -137180668 + LTR64 LTR ERVK 1 558 0 1201 170 45 34 chr4 47107994 47108126 -137180536 + MER57A LTR ERV1 262 400 -3 1707 120 70 99 chr4 47108273 47108656 -137180006 + THE1C LTR MaLR 1 372 -3 383 308 82 65 chr4 47108662 47109062 -137179600 - MLT1K LTR MaLR -49 539 133 27 29 0 0 chr4 47109596 47109630 -137179032 + AT_rich Low_complexity Low_complexity 1 34 0 470 268 16 8 chr4 47109715 47109838 -137178824 + MIR SINE MIR 83 206 -56 368 261 45 57 chr4 47110424 47110581 -137178081 + MIR SINE MIR 58 212 -50 4154 178 31 66 chr4 47110730 47111538 -137177124 + L1MA7 LINE L1 4549 5384 -907 2916 81 2 0 chr4 47111538 47111932 -137176730 + L1PA13 LINE L1 5750 6144 -19 4154 178 31 66 chr4 47111932 47112916 -137175746 + L1MA7 LINE L1 5384 6291 0 39 38 0 0 chr4 47112916 47112969 -137175693 + AT_rich Low_complexity Low_complexity 1 53 0 2651 216 49 9 chr4 47112969 47113603 -137175059 + MER67C LTR ERV1 52 710 0 21 0 0 0 chr4 47114161 47114182 -137174480 + AT_rich Low_complexity Low_complexity 1 21 0 401 279 50 36 chr4 47114269 47114434 -137174228 + L1ME LINE L1 5273 5439 -727 238 324 0 0 chr4 47114532 47114606 -137174056 + L1ME LINE L1 5565 5638 -532 1954 211 26 15 chr4 47114726 47115115 -137173547 - MER70B LTR ERVL -102 476 84 712 282 94 25 chr4 47115326 47115571 -137173091 + MIR SINE MIR 1 262 0 207 229 0 0 chr4 47116167 47116215 -137172447 + L2 LINE L2 3265 3312 -1 2707 3 40 0 chr4 47116311 47116609 -137172053 - AluYb8 SINE Alu -8 310 1 2052 222 57 2 chr4 47117591 47118014 -137170648 - MER70A LTR ERVL -26 446 1 21 0 0 0 chr4 47118804 47118825 -137169837 + AT_rich Low_complexity Low_complexity 1 21 0 225 231 0 0 chr4 47119042 47119094 -137169568 + L1MC4 LINE L1 6652 6703 -1339 * 235 180 0 0 chr4 47119067 47119117 -137169545 - L1MC4 LINE L1 -1340 6702 6653 23 54 0 0 chr4 47119235 47119272 -137169390 + AT_rich Low_complexity Low_complexity 1 37 0 441 309 119 10 chr4 47119298 47119492 -137169170 + MIR SINE MIR 1 215 -47 879 131 0 182 chr4 47119740 47119976 -137168686 + 7SK RNA RNA 1 193 0 256 305 41 16 chr4 47120013 47120194 -137168468 + L1ME LINE L1 5445 5630 -491 384 335 163 52 chr4 47120365 47120809 -137167853 - L2 LINE L2 -5 3267 2733 399 21 0 0 chr4 47120809 47120857 -137167805 + (TTG)n Simple_repeat Simple_repeat 2 49 0 384 335 163 52 chr4 47120857 47121048 -137167614 - L2 LINE L2 -539 2733 2565 6990 59 0 6 chr4 47121937 47122858 -137165804 - L1PA7 LINE L1 -1 6153 5235 28428 128 26 71 chr4 47122961 47128467 -137160195 - L1P LINE L1 -876 5270 12 21 0 0 0 chr4 47129407 47129428 -137159234 + AT_rich Low_complexity Low_complexity 1 21 0 288 243 68 0 chr4 47129572 47129646 -137159016 + Tigger3(Golem) DNA MER2_type 3 81 -2948 731 175 0 0 chr4 47129651 47129771 -137158891 + Tigger3(Golem) DNA MER2_type 2918 3037 0 287 246 131 23 chr4 47130378 47130508 -137158154 + MER103 DNA DNA 3 146 -20 364 266 105 0 chr4 47130677 47130820 -137157842 - L1MC4a LINE L1 -1220 6588 6431 * 760 281 63 21 chr4 47130813 47131144 -137157518 + L1MC4 LINE L1 6688 7032 -1010 801 218 23 132 chr4 47131175 47131262 -137157400 + MLT2D LTR ERVL 1 96 -366 1720 89 57 0 chr4 47131262 47131508 -137157154 - L1PA6 LINE L1 -6 6148 5889 801 218 23 132 chr4 47131508 47131698 -137156964 + MLT2D LTR ERVL 96 229 -233 207 0 0 0 chr4 47131698 47131721 -137156941 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 801 218 23 132 chr4 47131721 47131826 -137156836 + MLT2D LTR ERVL 229 344 -118 395 216 0 48 chr4 47131877 47132002 -137156660 + L1MC4 LINE L1 7097 7215 -827 21 36 0 0 chr4 47132465 47132493 -137156169 + AT_rich Low_complexity Low_complexity 1 28 0 1725 173 6 16 chr4 47133686 47133998 -137154664 + AluSx SINE Alu 3 311 -1 22 0 0 0 chr4 47134498 47134520 -137154142 + AT_rich Low_complexity Low_complexity 1 22 0 688 319 30 15 chr4 47134652 47134991 -137153671 - L2 LINE L2 -226 3087 2748 493 176 0 102 chr4 47134995 47135103 -137153559 - Tigger7 DNA MER2_type -1 2486 2390 * 2395 215 36 16 chr4 47135097 47135594 -137153068 - Tigger7 DNA MER2_type -1973 514 8 1239 260 188 26 chr4 47135594 47136136 -137152526 - L2 LINE L2 -557 2757 2128 2441 222 41 42 chr4 47136358 47137047 -137151615 + MER76 LTR ERV 1 688 0 29 60 0 0 chr4 47137286 47137336 -137151326 + AT_rich Low_complexity Low_complexity 1 50 0 1260 181 60 115 chr4 47137410 47137829 -137150833 + MSTD LTR MaLR 1 396 0 2319 183 21 2 chr4 47137838 47138258 -137150404 - MSTA LTR MaLR 0 428 1 1683 154 4 0 chr4 47138564 47138839 -137149823 - AluSx SINE Alu 0 315 40 202 315 34 11 chr4 47138971 47139060 -137149602 + MIR SINE MIR 51 141 -121 235 326 99 50 chr4 47139469 47139690 -137148972 + MIR SINE MIR 6 237 -25 292 237 0 0 chr4 47139925 47139984 -137148678 + AluJ/FLAM SINE Alu 3 61 -241 240 35 0 0 chr4 47140077 47140106 -137148556 + (GA)n Simple_repeat Simple_repeat 2 30 0 201 345 35 44 chr4 47140393 47140506 -137148156 - MIR SINE MIR -120 142 31 295 164 0 238 chr4 47141782 47141904 -137146758 - AluJ/FLAM SINE Alu -205 97 5 1084 325 35 9 chr4 47143203 47143655 -137145007 + LTR16B LTR ERVL 1 464 0 21 0 0 0 chr4 47143796 47143817 -137144845 + AT_rich Low_complexity Low_complexity 1 21 0 212 255 20 143 chr4 47145029 47145127 -137143535 + MIR SINE MIR 6 91 -171 26 30 0 0 chr4 47145943 47145976 -137142686 + AT_rich Low_complexity Low_complexity 1 33 0 2594 243 101 17 chr4 47146350 47147106 -137141556 - MER21B LTR ERV1 -2 861 43 308 286 14 0 chr4 47147109 47147179 -137141483 - MER21B LTR ERV1 -774 89 19 240 317 12 24 chr4 47147198 47147280 -137141382 - MER21B LTR ERV1 -770 93 13 258 32 0 0 chr4 47147535 47147566 -137141096 + (TG)n Simple_repeat Simple_repeat 2 32 0 229 229 0 0 chr4 47147704 47147765 -137140897 - LTR66 LTR ERVL -146 464 404 285 309 98 72 chr4 47148042 47148278 -137140384 - L2 LINE L2 -562 2752 2511 1088 302 67 58 chr4 47148636 47149219 -137139443 - MLT1G1 LTR MaLR -5 590 3 356 318 34 14 chr4 47150476 47150624 -137138038 - MIR SINE MIR -83 179 29 9313 219 45 19 chr4 47150713 47151381 -137137281 + L1PB1 LINE L1 2299 2948 -3203 2081 110 3 10 chr4 47151381 47151681 -137136981 + AluSx SINE Alu 1 298 -14 9313 219 45 19 chr4 47151681 47154403 -137134259 + L1PB1 LINE L1 2948 5804 -347 540 0 0 0 chr4 47154403 47154463 -137134199 + (TA)n Simple_repeat Simple_repeat 2 61 0 9313 219 45 19 chr4 47154463 47154813 -137133849 + L1PB1 LINE L1 5804 6143 -8 194 284 42 63 chr4 47155119 47155214 -137133448 + MIR SINE MIR 2 94 -168 535 237 39 39 chr4 47155226 47155395 -137133267 + MIR SINE MIR 71 241 -21 645 282 47 28 chr4 47157237 47157492 -137131170 + LTR33 LTR ERVL 14 273 -248 255 31 0 0 chr4 47157511 47157543 -137131119 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 883 127 12 92 chr4 47157598 47157771 -137130891 - AluSc SINE Alu -62 247 89 22 0 0 0 chr4 47158675 47158697 -137129965 + AT_rich Low_complexity Low_complexity 1 22 0 654 231 20 7 chr4 47159296 47159443 -137129219 - MER58B DNA MER1_type -5 336 188 180 158 0 0 chr4 47161044 47161082 -137127580 + (TA)n Simple_repeat Simple_repeat 2 39 0 187 304 0 0 chr4 47161943 47161989 -137126673 + MIR SINE MIR 207 252 -10 35 0 0 0 chr4 47164119 47164154 -137124508 + AT_rich Low_complexity Low_complexity 1 35 0 21 71 0 0 chr4 47165393 47165435 -137123227 + AT_rich Low_complexity Low_complexity 1 42 0 25 83 0 0 chr4 47165462 47165522 -137123140 + AT_rich Low_complexity Low_complexity 1 60 0 22 0 0 0 chr4 47166232 47166254 -137122408 + AT_rich Low_complexity Low_complexity 1 22 0 289 302 87 24 chr4 47166808 47166934 -137121728 + MIR SINE MIR 110 243 -19 1734 179 0 26 chr4 47168951 47169258 -137119404 + AluJb SINE Alu 1 299 -13 26 30 0 0 chr4 47170446 47170479 -137118183 + AT_rich Low_complexity Low_complexity 1 33 0 944 123 14 0 chr4 47170485 47170623 -137118039 - AluY SINE Alu -169 142 3 252 254 0 0 chr4 47170847 47170918 -137117744 + (TTTA)n Simple_repeat Simple_repeat 2 72 0 189 207 69 35 chr4 47170957 47171015 -137117647 + MIR3 SINE MIR 139 198 -10 291 393 55 22 chr4 47171468 47171743 -137116919 + L2 LINE L2 2558 2841 -473 1046 219 15 0 chr4 47171797 47172002 -137116660 + MER3 DNA MER1_type 2 209 0 49 66 0 0 chr4 47172386 47172477 -137116185 + AT_rich Low_complexity Low_complexity 1 91 0 513 0 0 0 chr4 47173131 47173188 -137115474 + (GGAA)n Simple_repeat Simple_repeat 2 58 0 542 78 23 55 chr4 47173350 47173478 -137115184 + (GGAA)n Simple_repeat Simple_repeat 1 124 0 245 194 45 0 chr4 47173482 47173549 -137115113 + GA-rich Low_complexity Low_complexity 4 73 0 234 246 18 0 chr4 47174428 47174485 -137114177 + L2 LINE L2 3256 3313 0 250 293 94 9 chr4 47175500 47175606 -137113056 + MIR SINE MIR 148 262 0 21 0 0 0 chr4 47176521 47176542 -137112120 + AT_rich Low_complexity Low_complexity 1 21 0 792 299 57 66 chr4 47176611 47177123 -137111539 + MLT1J LTR MaLR 5 511 0 221 319 58 0 chr4 47177750 47177819 -137110843 + MIR SINE MIR 49 121 -141 494 261 165 23 chr4 47177907 47178259 -137110403 - L1M4 LINE L1 -3276 2870 2469 8728 17 0 0 chr4 47178751 47179759 -137108903 - L1HS LINE L1 -1132 5014 4007 7960 9 0 2 chr4 47179753 47180883 -137107779 + L1HS LINE L1 5028 6155 0 * 879 231 8 15 chr4 47180984 47181252 -137107410 + L1HS LINE L1 5890 6155 0 25 0 0 0 chr4 47181259 47181284 -137107378 + AT_rich Low_complexity Low_complexity 1 25 0 207 0 0 0 chr4 47181284 47181307 -137107355 + (A)n Simple_repeat Simple_repeat 1 23 0 680 363 50 28 chr4 47181307 47181863 -137106799 + L2 LINE L2 2746 3310 -3 354 153 0 0 chr4 47182123 47182182 -137106480 - L1M1 LINE L1 -704 5600 5542 307 228 97 61 chr4 47184018 47184132 -137104530 - L1ME3A LINE L1 -90 6080 5963 582 274 97 66 chr4 47184346 47184594 -137104068 - L1ME3A LINE L1 -370 5799 5560 1756 125 0 82 chr4 47184594 47184913 -137103749 - AluSx SINE Alu -19 293 1 582 274 97 66 chr4 47184913 47185198 -137103464 - L1ME3A LINE L1 -609 5560 5254 276 30 0 0 chr4 47185454 47185487 -137103175 + (TG)n Simple_repeat Simple_repeat 2 34 0 184 356 0 11 chr4 47186078 47186165 -137102497 + MIR SINE MIR 105 190 -72 24 0 0 0 chr4 47186808 47186832 -137101830 + AT_rich Low_complexity Low_complexity 1 24 0 206 118 0 0 chr4 47187019 47187053 -137101609 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6813 32 1 0 chr4 47187080 47187891 -137100771 - L1PA3 LINE L1 0 6155 5344 * 9602 27 7 17 chr4 47187883 47189087 -137099575 + L1PA3 LINE L1 4153 5344 -802 21 71 0 0 chr4 47189406 47189448 -137099214 + AT_rich Low_complexity Low_complexity 1 42 0 24 0 0 0 chr4 47189884 47189908 -137098754 + AT_rich Low_complexity Low_complexity 1 24 0 2316 65 0 0 chr4 47190936 47191226 -137097436 - AluY SINE Alu -21 290 1 480 354 41 4 chr4 47191563 47191809 -137096853 - MIR SINE MIR -6 256 2 316 191 22 11 chr4 47192050 47192139 -137096523 + (TATG)n Simple_repeat Simple_repeat 3 92 0 21 0 0 0 chr4 47192805 47192826 -137095836 + AT_rich Low_complexity Low_complexity 1 21 0 248 197 0 33 chr4 47195762 47195823 -137092839 - MLT2D LTR ERVL 0 520 462 1384 210 17 10 chr4 47195875 47196170 -137092492 - MLT2D LTR ERVL -68 346 50 1649 186 27 30 chr4 47196170 47196498 -137092164 + Tigger3(Golem) DNA MER2_type 1 327 -2702 203 119 48 36 chr4 47196625 47196709 -137091953 + (TATATG)n Simple_repeat Simple_repeat 5 89 0 4242 155 77 5 chr4 47196720 47197551 -137091111 + Tigger3b DNA MER2_type 341 1231 0 367 85 0 0 chr4 47197555 47197602 -137091060 - MLT2D LTR ERVL -417 47 1 27 29 0 0 chr4 47198152 47198186 -137090476 + AT_rich Low_complexity Low_complexity 1 34 0 25 0 0 0 chr4 47198252 47198277 -137090385 + AT_rich Low_complexity Low_complexity 1 25 0 28 0 0 0 chr4 47198327 47198355 -137090307 + AT_rich Low_complexity Low_complexity 1 28 0 1761 184 12 12 chr4 47198843 47199174 -137089488 - MER44D DNA MER2_type -8 601 1 22 0 0 0 chr4 47199532 47199554 -137089108 + AT_rich Low_complexity Low_complexity 1 22 0 34 24 0 0 chr4 47200256 47200297 -137088365 + AT_rich Low_complexity Low_complexity 1 41 0 27 49 0 0 chr4 47200540 47200581 -137088081 + AT_rich Low_complexity Low_complexity 1 41 0 713 185 0 0 chr4 47200581 47200700 -137087962 - FLAM_C SINE Alu -14 119 1 1371 181 40 16 chr4 47200997 47201318 -137087344 + L1PB4 LINE L1 5827 6155 -1 378 0 0 0 chr4 47201567 47201609 -137087053 + (TA)n Simple_repeat Simple_repeat 2 43 0 23 0 0 0 chr4 47202134 47202157 -137086505 + AT_rich Low_complexity Low_complexity 1 23 0 1756 36 0 5 chr4 47202300 47202519 -137086143 + L1PA4 LINE L1 5938 6155 0 23 92 0 0 chr4 47203008 47203073 -137085589 + AT_rich Low_complexity Low_complexity 1 65 0 22 35 0 0 chr4 47203175 47203204 -137085458 + AT_rich Low_complexity Low_complexity 1 29 0 28 61 0 0 chr4 47203231 47203280 -137085382 + AT_rich Low_complexity Low_complexity 1 49 0 186 246 0 0 chr4 47203666 47203727 -137084935 + GA-rich Low_complexity Low_complexity 2 62 0 28 61 0 0 chr4 47203997 47204046 -137084616 + AT_rich Low_complexity Low_complexity 1 49 0 1237 178 167 55 chr4 47206888 47207236 -137081426 + MLT1B LTR MaLR 3 389 -1 220 275 0 29 chr4 47207514 47207583 -137081079 + CT-rich Low_complexity Low_complexity 5 71 0 369 357 100 60 chr4 47207783 47208865 -137079797 + L2 LINE L2 1853 2977 -337 28 71 0 0 chr4 47211846 47211902 -137076760 + AT_rich Low_complexity Low_complexity 1 56 0 390 62 0 173 chr4 47212083 47212164 -137076498 - MER41A LTR ERV1 -90 464 398 516 292 38 5 chr4 47212256 47212441 -137076221 - L1M4 LINE L1 -2423 3723 3533 259 270 80 0 chr4 47212488 47212588 -137076074 + L1MC4 LINE L1 7699 7806 -236 * 399 232 54 27 chr4 47212585 47212770 -137075892 + L1M4 LINE L1 2764 2953 -3193 698 237 34 29 chr4 47213114 47213321 -137075341 - MER3 DNA MER1_type 0 209 2 1423 301 86 12 chr4 47213324 47213896 -137074766 + MER20B DNA MER1_type 1 614 -169 252 0 0 0 chr4 47213943 47213971 -137074691 + (CA)n Simple_repeat Simple_repeat 2 29 0 411 38 0 0 chr4 47213996 47214049 -137074613 + (TG)n Simple_repeat Simple_repeat 2 54 0 1727 182 0 3 chr4 47214885 47215181 -137073481 + AluJb SINE Alu 1 295 -17 21 0 0 0 chr4 47215859 47215880 -137072782 + AT_rich Low_complexity Low_complexity 1 21 0 537 16 0 0 chr4 47216138 47216200 -137072462 + (CA)n Simple_repeat Simple_repeat 2 63 0 581 319 72 17 chr4 47216861 47217422 -137071240 + L1MDa LINE L1 1455 2060 -4481 330 283 25 74 chr4 47217688 47217984 -137070678 + L1MDa LINE L1 2461 2733 -3988 2160 107 3 26 chr4 47217984 47218292 -137070370 + AluSp SINE Alu 1 301 -12 330 283 25 74 chr4 47218292 47218401 -137070261 + L1MDa LINE L1 2733 2846 -3875 3005 137 35 4 chr4 47218432 47218951 -137069711 + L1MA3 LINE L1 5769 6303 -2 274 247 62 62 chr4 47218973 47219119 -137069543 + L1MDa LINE L1 2824 2969 -3571 314 252 30 15 chr4 47219169 47219300 -137069362 + L1MDa LINE L1 3178 3310 -3230 300 283 34 73 chr4 47220713 47220946 -137067716 + HAL1b LINE L1 349 572 -776 1594 149 45 3 chr4 47221028 47221316 -137067346 - L1PA14 LINE L1 -6 6155 5856 209 227 0 0 chr4 47221417 47221461 -137067201 + A-rich Low_complexity Low_complexity 1 44 0 234 248 106 26 chr4 47221990 47222103 -137066559 + L1MDa LINE L1 4503 4624 -1916 234 381 0 0 chr4 47222842 47222905 -137065757 - MER91B DNA MER1_type -126 64 2 257 336 74 16 chr4 47223213 47223335 -137065327 - MIR3 SINE MIR -27 181 53 1047 265 66 18 chr4 47224370 47224730 -137063932 + MLT1I LTR MaLR 46 406 -3 319 237 51 51 chr4 47225010 47225128 -137063534 - MIR SINE MIR -105 157 40 1647 100 16 0 chr4 47225441 47225691 -137062971 + L1PA13 LINE L1 5908 6161 -2 195 307 148 0 chr4 47226373 47226461 -137062201 - MIR SINE MIR -109 153 53 189 417 52 0 chr4 47226747 47226862 -137061800 - L2 LINE L2 -18 3254 3134 1007 291 69 5 chr4 47227389 47227764 -137060898 + LTR16B LTR ERVL 1 399 -65 403 264 45 9 chr4 47228174 47228284 -137060378 - MER94 DNA DNA -19 115 2 24 0 0 0 chr4 47228670 47228694 -137059968 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr4 47228846 47228871 -137059791 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr4 47229086 47229108 -137059554 + AT_rich Low_complexity Low_complexity 1 22 0 299 338 15 15 chr4 47229189 47229325 -137059337 - MIR3 SINE MIR -6 202 67 283 296 0 57 chr4 47229929 47230017 -137058645 - L2 LINE L2 -5 3308 3226 222 355 82 0 chr4 47230022 47230132 -137058530 + MIR SINE MIR 16 134 -74 260 279 96 48 chr4 47230685 47230893 -137057769 + HAL1 LINE L1 1958 2175 -332 643 95 19 0 chr4 47230943 47231048 -137057614 + (TAGA)n Simple_repeat Simple_repeat 4 110 0 1693 98 16 0 chr4 47232132 47232387 -137056275 - L1MA1 LINE L1 -9 6293 6035 351 333 8 0 chr4 47232673 47232793 -137055869 + CT-rich Low_complexity Low_complexity 4 124 0 385 255 38 0 chr4 47233815 47233921 -137054741 + L2 LINE L2 3203 3312 -1 359 304 40 16 chr4 47233934 47234059 -137054603 - MIR SINE MIR -90 172 45 425 275 12 84 chr4 47234089 47234256 -137054406 + L2 LINE L2 2619 2773 -541 4279 268 20 12 chr4 47234262 47235690 -137052972 - L1PA16 LINE L1 -2534 3612 2174 * 6860 213 24 7 chr4 47235689 47238154 -137050508 + L1PA16 LINE L1 3618 6162 -1 2175 136 24 27 chr4 47238365 47238741 -137049921 - THE1C LTR MaLR 0 375 1 314 303 67 18 chr4 47238856 47239021 -137049641 + L2 LINE L2 3141 3313 0 403 292 66 29 chr4 47242077 47242214 -137046448 - MER91B DNA MER1_type 0 190 49 246 295 105 21 chr4 47242427 47242522 -137046140 + L2 LINE L2 3209 3311 -2 501 58 0 0 chr4 47242750 47242819 -137045843 + (TC)n Simple_repeat Simple_repeat 2 70 0 303 296 23 0 chr4 47242821 47242909 -137045753 - L1MC4 LINE L1 -1339 6703 6614 210 191 0 0 chr4 47242909 47242951 -137045711 + (TA)n Simple_repeat Simple_repeat 2 43 0 287 278 0 0 chr4 47242951 47243041 -137045621 - L1MC4 LINE L1 -1339 6703 6614 183 184 0 0 chr4 47243039 47243077 -137045585 + (TA)n Simple_repeat Simple_repeat 2 39 0 * 301 282 47 0 chr4 47243058 47243177 -137045485 + L1MC4 LINE L1 6615 6703 -1339 200 219 0 0 chr4 47243766 47243807 -137044855 - L2 LINE L2 -11 3302 3262 26 0 0 0 chr4 47243975 47244001 -137044661 + AT_rich Low_complexity Low_complexity 1 26 0 1688 116 0 146 chr4 47244003 47244338 -137044324 - AluSx SINE Alu -26 286 1 323 166 7 159 chr4 47245383 47245528 -137043134 - L1ME4a LINE L1 -32 6089 5967 336 317 0 29 chr4 47245982 47246086 -137042576 + L2 LINE L2 3210 3310 -3 248 358 73 0 chr4 47246301 47246438 -137042224 - L3 LINE CR1 -189 1388 1242 192 40 0 0 chr4 47246492 47246517 -137042145 + (TG)n Simple_repeat Simple_repeat 2 26 0 218 385 48 0 chr4 47246526 47246609 -137042053 - L3 LINE CR1 -450 1127 1041 300 404 20 7 chr4 47246764 47246910 -137041752 + MIR SINE MIR 12 159 -103 367 282 69 27 chr4 47246940 47247128 -137041534 - HAL1 LINE L1 -899 1608 1413 33 25 0 0 chr4 47247135 47247175 -137041487 + AT_rich Low_complexity Low_complexity 1 40 0 24 0 0 0 chr4 47248840 47248864 -137039798 + AT_rich Low_complexity Low_complexity 1 24 0 203 247 140 32 chr4 47249390 47249483 -137039179 - MIR3 SINE MIR -1 207 105 432 37 0 0 chr4 47250487 47250541 -137038121 + (CA)n Simple_repeat Simple_repeat 1 54 0 228 86 0 0 chr4 47251952 47251987 -137036675 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 23 33 0 0 chr4 47252897 47252927 -137035735 + AT_rich Low_complexity Low_complexity 1 30 0 898 261 9 9 chr4 47253933 47254151 -137034511 + MER20 DNA MER1_type 2 219 0 314 259 37 0 chr4 47254571 47254652 -137034010 - L2 LINE L2 0 3272 3189 486 239 0 18 chr4 47254658 47254771 -137033891 + MIR SINE MIR 116 226 -36 209 233 17 50 chr4 47255265 47255325 -137033337 - MIR SINE MIR 0 262 205 447 289 14 21 chr4 47255522 47255664 -137032998 + L2 LINE L2 3169 3309 -4 231 36 0 0 chr4 47255718 47255746 -137032916 + (TA)n Simple_repeat Simple_repeat 2 29 0 410 329 106 57 chr4 47256279 47256750 -137031912 + L2 LINE L2 1794 2287 -1027 346 259 59 0 chr4 47256970 47257055 -137031607 + MIR SINE MIR 163 252 -10 425 366 80 22 chr4 47257141 47257603 -137031059 + L2 LINE L2 2552 3048 -224 249 317 50 42 chr4 47257684 47257804 -137030858 - L2 LINE L2 0 3313 3193 180 320 133 16 chr4 47257871 47257999 -137030663 + L2 LINE L2 3170 3312 -1 22 0 0 0 chr4 47258134 47258156 -137030506 + AT_rich Low_complexity Low_complexity 1 22 0 295 374 45 7 chr4 47258270 47258425 -137030237 + MIR SINE MIR 37 197 -65 717 317 15 27 chr4 47258554 47258816 -137029846 - MIR SINE MIR -3 259 1 22 0 0 0 chr4 47259192 47259214 -137029448 + AT_rich Low_complexity Low_complexity 1 22 0 650 324 57 17 chr4 47259493 47259996 -137028666 + ERVL LTR ERVL 955 1515 -4249 1452 231 31 22 chr4 47260185 47260544 -137028118 + MLT1A1 LTR MaLR 2 363 -2 4818 317 68 19 chr4 47260548 47263105 -137025557 + ERVL LTR ERVL 1635 4335 -1429 4589 179 11 3 chr4 47263106 47264238 -137024424 + L1PA15 LINE L1 4886 6031 -134 2079 111 7 0 chr4 47264382 47264670 -137023992 - AluSc SINE Alu -19 290 1 2174 165 70 1 chr4 47264791 47265183 -137023479 + MSTA LTR MaLR 14 428 0 21 57 0 0 chr4 47265938 47265973 -137022689 + AT_rich Low_complexity Low_complexity 1 35 0 201 369 43 14 chr4 47266056 47266197 -137022465 + MER5B DNA MER1_type 11 155 -23 213 208 26 52 chr4 47266933 47267010 -137021652 + L3 LINE CR1 521 595 -982 2011 245 128 29 chr4 47267164 47267924 -137020738 - L1ME1 LINE L1 -6 6160 5326 13107 215 43 17 chr4 47267938 47269464 -137019198 - L1PB2 LINE L1 0 6867 5381 1952 125 7 37 chr4 47269464 47269761 -137018901 - AluSx SINE Alu -19 293 6 13107 215 43 17 chr4 47269761 47275739 -137012923 - L1PB2 LINE L1 -1486 5381 3 897 271 45 0 chr4 47275801 47276093 -137012569 - L1ME1 LINE L1 -850 5296 4992 2634 17 7 3 chr4 47276107 47276407 -137012255 - AluYb8 SINE Alu -17 301 1 1061 228 9 0 chr4 47276407 47276635 -137012027 + MLT2B1 LTR ERVL 3 232 -288 478 204 65 25 chr4 47276652 47276853 -137011809 + L1M4 LINE L1 3125 3333 -2813 530 246 76 6 chr4 47276860 47277031 -137011631 - MER58C DNA MER1_type -6 209 27 638 306 23 7 chr4 47277039 47277346 -137011316 + L1M4 LINE L1 3328 3639 -2507 710 241 20 41 chr4 47277392 47277587 -137011075 - MLT1D LTR MaLR 0 505 315 1065 274 78 8 chr4 47277592 47277950 -137010712 - L1MCc LINE L1 -6022 401 19 34 72 0 0 chr4 47278695 47278764 -137009898 + AT_rich Low_complexity Low_complexity 1 69 0 2515 31 3 0 chr4 47279057 47279347 -137009315 + AluY SINE Alu 20 310 -1 34 0 0 0 chr4 47279666 47279700 -137008962 + AT_rich Low_complexity Low_complexity 1 34 0 274 218 141 0 chr4 47279712 47279790 -137008872 + MER103 DNA DNA 52 140 -26 25 65 0 0 chr4 47280139 47280185 -137008477 + AT_rich Low_complexity Low_complexity 1 46 0 674 191 0 0 chr4 47280893 47281008 -137007654 + Tigger4(Zombi) DNA MER2_type 1 115 -2616 331 298 53 15 chr4 47281140 47281271 -137007391 + L2 LINE L2 3137 3272 0 198 204 23 0 chr4 47282708 47282752 -137005910 - MIR SINE MIR -14 248 204 2625 92 85 12 chr4 47284006 47284381 -137004281 + MLT2A1 LTR ERVL 1 410 -34 216 0 0 0 chr4 47284381 47284405 -137004257 + (TA)n Simple_repeat Simple_repeat 2 25 0 2625 92 85 12 chr4 47284405 47284442 -137004220 + MLT2A1 LTR ERVL 410 443 -1 6580 78 1 6 chr4 47284443 47285296 -137003366 + HERVL-A1 LTR ERVL 1 849 -4805 * 11791 83 13 2 chr4 47285280 47286838 -137001824 + HERVL-A1 LTR ERVL 4080 5654 0 2886 108 28 7 chr4 47286838 47287265 -137001397 + MLT2A1 LTR ERVL 1 436 -8 234 0 0 0 chr4 47287597 47287623 -137001039 + (TG)n Simple_repeat Simple_repeat 2 27 0 279 336 56 9 chr4 47288381 47288488 -137000174 + L2 LINE L2 3196 3307 -6 21 0 0 0 chr4 47288538 47288559 -137000103 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr4 47289618 47289655 -136999007 + AT_rich Low_complexity Low_complexity 1 37 0 2834 107 27 14 chr4 47290068 47290641 -136998021 - L1P4 LINE L1 -477 5691 5110 1367 199 13 23 chr4 47290641 47290947 -136997715 - AluJo SINE Alu -4 308 6 21 36 0 0 chr4 47291030 47291058 -136997604 + AT_rich Low_complexity Low_complexity 1 28 0 1924 94 71 4 chr4 47291623 47291932 -136996730 + AluSq SINE Alu 1 327 0 197 355 0 16 chr4 47292972 47293034 -136995628 - L2 LINE L2 -11 3261 3201 180 394 0 0 chr4 47293115 47293181 -136995481 - L2 LINE L2 -201 3071 3006 313 451 25 86 chr4 47293196 47293520 -136995142 - MER46C DNA MER2_type -10 328 25 261 302 249 10 chr4 47293548 47293595 -136995067 - MIR SINE MIR 0 262 227 2282 153 0 21 chr4 47293595 47293967 -136994695 - THE1B LTR MaLR 0 364 1 261 302 249 10 chr4 47293967 47293984 -136994678 - MIR SINE MIR -35 227 215 25 31 0 0 chr4 47293984 47294016 -136994646 + AT_rich Low_complexity Low_complexity 1 32 0 261 302 249 10 chr4 47294016 47294124 -136994538 - MIR SINE MIR -47 215 9 183 329 67 46 chr4 47294316 47294556 -136994106 - L2 LINE L2 -922 2392 2148 2184 151 8 30 chr4 47294582 47294954 -136993708 - THE1B LTR MaLR 0 364 1 29 28 0 0 chr4 47295088 47295124 -136993538 + AT_rich Low_complexity Low_complexity 1 36 0 451 149 214 24 chr4 47295330 47295457 -136993205 + MSTA LTR MaLR 207 362 -70 1804 257 60 21 chr4 47295457 47295939 -136992723 + L1PA12 LINE L1 16 516 -7065 5118 250 29 11 chr4 47295941 47297427 -136991235 + L1PA12 LINE L1 2380 3892 -3692 444 216 0 0 chr4 47297427 47297529 -136991133 + (CATATA)n Simple_repeat Simple_repeat 4 105 0 2180 160 5 19 chr4 47297548 47297917 -136990745 + THE1B LTR MaLR 1 364 0 758 137 61 0 chr4 47297917 47298048 -136990614 + THE1B-int LTR MaLR 1 139 -1441 1202 118 15 0 chr4 47298148 47298343 -136990319 + L1PA13 LINE L1 5966 6163 0 1933 121 50 0 chr4 47298419 47298716 -136989946 - AluSx SINE Alu 0 312 1 2487 193 30 22 chr4 47298886 47299388 -136989274 + MER67A LTR ERV1 25 530 -13 7039 44 3 0 chr4 47299770 47300632 -136988030 - L1P LINE L1 -1843 4303 3439 2345 32 0 0 chr4 47300632 47300908 -136987754 + L1PA5 LINE L1 5870 6148 -6 924 71 0 2 chr4 47301255 47301509 -136987153 + AluY SINE Alu 1 309 -2 357 332 87 29 chr4 47303032 47303273 -136985389 - MLT1I LTR MaLR -13 396 142 3916 41 0 4 chr4 47303787 47304313 -136984349 + L1PA4 LINE L1 5667 6190 0 449 193 167 0 chr4 47304338 47304452 -136984210 + L1PB4 LINE L1 6021 6153 -3 215 233 0 0 chr4 47305271 47305314 -136983348 + (CATATA)n Simple_repeat Simple_repeat 4 46 0 261 308 121 0 chr4 47305315 47305406 -136983256 + MIR SINE MIR 90 191 -71 2622 186 21 40 chr4 47305488 47306069 -136982593 + MER101B LTR ERV1 1 570 0 382 243 19 28 chr4 47306086 47306193 -136982469 - L2 LINE L2 -20 3293 3188 2378 68 0 0 chr4 47306507 47306803 -136981859 + THE1C-int LTR MaLR 1285 1580 0 562 118 0 0 chr4 47306803 47306879 -136981783 + THE1C LTR MaLR 1 76 -299 6943 196 17 0 chr4 47306879 47308269 -136980393 + L1PA11 LINE L1 2543 3956 -2190 1539 43 0 0 chr4 47308269 47308452 -136980210 + L1PA3 LINE L1 5968 6153 -2 * 7473 159 34 0 chr4 47308447 47310637 -136978025 + L1PA11 LINE L1 3951 6172 -2 39 84 0 0 chr4 47310742 47310837 -136977825 + AT_rich Low_complexity Low_complexity 1 95 0 2194 55 0 0 chr4 47311553 47311825 -136976837 + L1PA3 LINE L1 5878 6149 -6 207 0 0 0 chr4 47311833 47311856 -136976806 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 1182 221 101 45 chr4 47312065 47312441 -136976221 + MLT1E1 LTR MaLR 1 397 -257 231 246 53 53 chr4 47312563 47312677 -136975985 - MIR SINE MIR -57 205 92 236 152 152 22 chr4 47312871 47312963 -136975699 + L1ME4a LINE L1 6008 6111 -10 263 278 19 0 chr4 47313154 47313208 -136975454 + MIR SINE MIR 15 69 -193 234 363 0 67 chr4 47313269 47313404 -136975258 + MIR SINE MIR 14 139 -123 28 29 0 0 chr4 47313460 47313495 -136975167 + AT_rich Low_complexity Low_complexity 1 35 0 305 348 7 28 chr4 47313891 47314032 -136974630 - L2 LINE L2 -5 3308 3171 2094 121 3 0 chr4 47314033 47314323 -136974339 + AluSc SINE Alu 1 291 -18 250 221 0 53 chr4 47314324 47314419 -136974243 + L1MC4 LINE L1 6614 6703 -1339 315 310 0 0 chr4 47314420 47314507 -136974155 + L1MC4 LINE L1 6615 6701 -1341 189 147 0 0 chr4 47315607 47315641 -136973021 + (A)n Simple_repeat Simple_repeat 1 34 0 2307 98 3 0 chr4 47315849 47316155 -136972507 + AluSp SINE Alu 1 307 -6 540 302 69 51 chr4 47316155 47316546 -136972116 + MLT1J2 LTR MaLR 2 399 -51 428 380 45 4 chr4 47317450 47317692 -136970970 + MIR SINE MIR 3 254 -8 22 70 0 0 chr4 47317692 47317735 -136970927 + AT_rich Low_complexity Low_complexity 1 43 0 259 351 52 0 chr4 47317824 47317978 -136970684 - MIR SINE MIR -15 247 86 897 245 79 100 chr4 47318173 47318642 -136970020 - MLT1C LTR MaLR -6 461 3 22 0 0 0 chr4 47319447 47319469 -136969193 + AT_rich Low_complexity Low_complexity 1 22 0 628 220 234 14 chr4 47320006 47320356 -136968306 - L1ME3A LINE L1 -5 6165 5739 28 48 0 0 chr4 47320406 47320448 -136968214 + AT_rich Low_complexity Low_complexity 1 42 0 589 259 143 11 chr4 47321526 47321715 -136966947 + MIR SINE MIR 49 262 0 384 313 28 0 chr4 47321815 47321959 -136966703 + MIR SINE MIR 50 197 -65 1623 155 74 19 chr4 47322503 47322826 -136965836 + MER61A LTR ERV1 3 343 0 340 410 65 24 chr4 47323870 47324363 -136964299 + L2 LINE L2 2325 2837 -477 189 329 0 14 chr4 47324471 47324541 -136964121 + L2 LINE L2 2985 3053 -219 593 320 30 5 chr4 47324902 47325102 -136963560 + MIR SINE MIR 49 253 -9 21 0 0 0 chr4 47325523 47325544 -136963118 + AT_rich Low_complexity Low_complexity 1 21 0 272 374 143 25 chr4 47325718 47326151 -136962511 + L2 LINE L2 2830 3313 0 1850 163 21 3 chr4 47326200 47326531 -136962131 + MER1B DNA MER1_type 1 337 0 329 304 22 51 chr4 47326922 47327060 -136961602 - MIR SINE MIR -3 259 126 308 294 78 106 chr4 47327078 47327199 -136961463 - L1MEc LINE L1 -6122 274 162 2394 83 3 0 chr4 47327199 47327501 -136961161 - AluSp SINE Alu -10 303 1 308 294 78 106 chr4 47327501 47327624 -136961038 - L1MEc LINE L1 -6234 162 37 21 71 0 0 chr4 47328212 47328254 -136960408 + AT_rich Low_complexity Low_complexity 1 42 0 331 231 68 43 chr4 47328453 47328570 -136960092 + MIR SINE MIR 82 201 -61 416 298 36 74 chr4 47329365 47330077 -136958585 + L1MEd LINE L1 569 1253 -4866 4742 163 26 12 chr4 47330415 47331295 -136957367 + L1PB4 LINE L1 5263 6154 -2 298 268 105 30 chr4 47331289 47331584 -136957078 + L1MEd LINE L1 2913 3229 -2900 * 721 299 53 70 chr4 47331585 47332056 -136956606 + MLT1J LTR MaLR 47 509 -2 399 344 82 33 chr4 47332096 47332462 -136956200 - L2 LINE L2 -1898 1416 1033 577 208 0 9 chr4 47332542 47332687 -136955975 + FLAM_A SINE Alu 13 156 0 22 80 0 0 chr4 47332929 47332979 -136955683 + AT_rich Low_complexity Low_complexity 1 50 0 180 111 0 0 chr4 47334964 47334991 -136953671 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 355 222 9 9 chr4 47335106 47335214 -136953448 + (CATA)n Simple_repeat Simple_repeat 4 111 0 615 223 8 0 chr4 47336266 47336396 -136952266 + FLAM_A SINE Alu 1 131 -2 457 307 19 42 chr4 47336538 47336750 -136951912 + MIR SINE MIR 48 254 -8 1576 216 14 14 chr4 47337139 47337487 -136951175 + MLT1A1 LTR MaLR 10 357 -8 15516 34 1 3 chr4 47337712 47340355 -136948307 + L1PA4 LINE L1 3520 6161 0 446 258 107 56 chr4 47340702 47340880 -136947782 - MIR SINE MIR -12 250 64 21 0 0 0 chr4 47341283 47341304 -136947358 + AT_rich Low_complexity Low_complexity 1 21 0 309 399 75 4 chr4 47341342 47341570 -136947092 + HAL1b LINE L1 410 653 -695 555 245 37 83 chr4 47341583 47341703 -136946959 - MIR SINE MIR -1 261 137 1509 201 99 9 chr4 47341703 47342046 -136946616 - MLT1A2 LTR MaLR 0 374 1 555 245 37 83 chr4 47342046 47342072 -136946590 - MIR SINE MIR -125 137 111 2200 172 60 0 chr4 47342072 47342473 -136946189 - MSTB LTR MaLR -1 425 1 555 245 37 83 chr4 47342473 47342566 -136946096 - MIR SINE MIR -151 111 32 340 180 11 11 chr4 47342952 47343041 -136945621 + CT-rich Low_complexity Low_complexity 1 89 0 271 313 50 10 chr4 47343501 47343600 -136945062 - L3 LINE CR1 -1081 496 394 3426 194 61 26 chr4 47343676 47343892 -136944770 - L1MA10 LINE L1 -7 6327 6120 1959 155 0 3 chr4 47343892 47344188 -136944474 - AluSx SINE Alu -17 295 1 3426 194 61 26 chr4 47344188 47344940 -136943722 - L1MA10 LINE L1 -214 6120 5340 2031 204 35 4 chr4 47344939 47345401 -136943261 + L1 LINE L1 4318 4793 -1353 * 1566 134 21 90 chr4 47345418 47345753 -136942909 + MER44D DNA MER2_type 4 585 -24 2192 222 33 49 chr4 47345754 47346308 -136942354 + Tigger7 DNA MER2_type 2 564 -2023 3278 83 5 0 chr4 47346308 47346754 -136941908 - L1PA7 LINE L1 0 6154 5707 2192 222 33 49 chr4 47346754 47346829 -136941833 + Tigger7 DNA MER2_type 564 2506 -81 274 302 0 0 chr4 47346830 47346893 -136941769 - MER2 DNA MER2_type -3 342 280 1116 145 6 6 chr4 47346931 47347110 -136941552 - AluSg SINE Alu -88 222 44 1214 228 22 96 chr4 47347110 47347589 -136941073 + MLT2B3 LTR ERVL 128 507 -8 27895 194 43 25 chr4 47347598 47353249 -136935413 + ERVL-B3-B2 LTR ERVL 2 5755 -9 1999 229 45 11 chr4 47353251 47353692 -136934970 + MLT2B2 LTR ERVL 1 456 -59 525 80 0 0 chr4 47353692 47353767 -136934895 + (TCTA)n Simple_repeat Simple_repeat 2 76 0 198 156 0 0 chr4 47353780 47353825 -136934837 + (TAGA)n Simple_repeat Simple_repeat 1 45 0 641 226 0 8 chr4 47353848 47353972 -136934690 - FLAM_C SINE Alu -12 131 9 803 131 7 15 chr4 47354002 47354139 -136934523 - MLT2B1 LTR ERVL -384 136 1 10348 32 2 0 chr4 47355475 47357492 -136931170 - L1PA4 LINE L1 0 6155 4137 227 320 8 57 chr4 47359456 47359578 -136929084 + LTR67 LTR ERVL 102 217 -340 3942 30 2 0 chr4 47359694 47360168 -136928494 - L1PA3 LINE L1 -1 6154 5680 3499 31 0 0 chr4 47360168 47360714 -136927948 + L1PA3 LINE L1 5128 5673 -482 501 295 104 46 chr4 47361253 47361494 -136927168 + MIR SINE MIR 8 262 0 1409 269 67 20 chr4 47361527 47362021 -136926641 - LTR40a LTR ERVL 0 519 3 670 259 25 13 chr4 47362022 47362180 -136926482 - HERVL40 LTR ERVL 0 5530 5371 28 48 0 0 chr4 47362514 47362556 -136926106 + AT_rich Low_complexity Low_complexity 1 42 0 576 226 74 52 chr4 47362664 47362894 -136925768 + L1MEd LINE L1 1023 1257 -4862 1807 138 10 30 chr4 47364149 47364453 -136924209 + AluSx SINE Alu 1 298 -14 1338 189 32 32 chr4 47364896 47365208 -136923454 - AluJo SINE Alu 0 312 1 23 68 0 0 chr4 47366580 47366624 -136922038 + AT_rich Low_complexity Low_complexity 1 44 0 22 35 0 0 chr4 47367636 47367665 -136920997 + AT_rich Low_complexity Low_complexity 1 29 0 196 53 53 0 chr4 47369106 47369144 -136919518 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 254 359 0 0 chr4 47369239 47369317 -136919345 + MIR SINE MIR 170 247 -15 226 152 0 22 chr4 47369785 47369831 -136918831 + (CA)n Simple_repeat Simple_repeat 2 46 0 30 93 0 0 chr4 47370365 47370451 -136918211 + AT_rich Low_complexity Low_complexity 1 86 0 32 26 0 0 chr4 47371278 47371317 -136917345 + AT_rich Low_complexity Low_complexity 1 39 0 24 64 0 39 chr4 47373026 47373104 -136915558 + AT_rich Low_complexity Low_complexity 1 75 0 483 48 0 0 chr4 47373121 47373183 -136915479 + (TG)n Simple_repeat Simple_repeat 1 62 0 398 329 102 36 chr4 47375302 47375527 -136913135 + L2 LINE L2 2557 2796 -518 362 385 60 25 chr4 47375665 47375982 -136912680 + L2 LINE L2 2967 3294 -19 27 49 0 0 chr4 47375987 47376028 -136912634 + AT_rich Low_complexity Low_complexity 1 41 0 363 321 95 33 chr4 47376478 47376721 -136911941 - MIR SINE MIR 0 262 5 22 35 0 0 chr4 47378154 47378183 -136910479 + AT_rich Low_complexity Low_complexity 1 29 0 346 286 124 54 chr4 47379093 47379334 -136909328 + L2 LINE L2 3015 3272 0 31 26 0 0 chr4 47379629 47379667 -136908995 + AT_rich Low_complexity Low_complexity 1 38 0 244 194 15 15 chr4 47380776 47380843 -136907819 + T-rich Low_complexity Low_complexity 1 67 0 281 388 35 61 chr4 47381152 47381509 -136907153 - L2 LINE L2 -36 3236 2890 233 278 137 35 chr4 47381509 47381645 -136907017 + MIR SINE MIR 2 148 -66 199 337 47 0 chr4 47381796 47381882 -136906780 - L2 LINE L2 -588 2726 2637 218 359 60 85 chr4 47382303 47382551 -136906111 - L2 LINE L2 -17 3255 3014 319 254 0 0 chr4 47384229 47384292 -136904370 - L2 LINE L2 0 3272 3210 27 29 0 0 chr4 47384615 47384649 -136904013 + AT_rich Low_complexity Low_complexity 1 34 0 596 296 53 16 chr4 47385594 47385837 -136902825 + MIR SINE MIR 1 252 -10 21 36 0 0 chr4 47386354 47386382 -136902280 + AT_rich Low_complexity Low_complexity 1 28 0 1992 143 3 0 chr4 47386731 47387032 -136901630 + AluSg1 SINE Alu 1 302 -7 470 149 11 0 chr4 47387032 47387119 -136901543 + GA-rich Low_complexity Low_complexity 1 88 0 260 186 17 0 chr4 47387174 47387233 -136901429 + (TA)n Simple_repeat Simple_repeat 1 60 0 3794 244 79 107 chr4 47387384 47389073 -136899589 - L1 LINE L1 -1044 5102 3368 372 43 0 0 chr4 47389073 47389119 -136899543 + (TA)n Simple_repeat Simple_repeat 1 46 0 3794 244 79 107 chr4 47389119 47389157 -136899505 - L1 LINE L1 -2778 3368 3330 1684 167 0 34 chr4 47389157 47389451 -136899211 - AluSx SINE Alu -28 284 1 3794 244 79 107 chr4 47389451 47389467 -136899195 - L1 LINE L1 -2816 3330 3315 189 0 0 0 chr4 47389467 47389488 -136899174 + (TG)n Simple_repeat Simple_repeat 2 22 0 3794 244 79 107 chr4 47389488 47390240 -136898422 - L1 LINE L1 -2831 3315 2674 131 39 0 0 chr4 47390320 47390500 -136898162 + AT_rich Low_complexity Low_complexity 1 180 0 2859 234 27 31 chr4 47390500 47390817 -136897845 - L1M4c LINE L1 -4749 1897 1580 2173 118 0 7 chr4 47390817 47391121 -136897541 - AluSx SINE Alu -4 308 7 2859 234 27 31 chr4 47391121 47391851 -136896811 - L1M4c LINE L1 -5066 1580 845 684 228 56 43 chr4 47391899 47392132 -136896530 + MER46A DNA MER2_type 1 236 0 186 43 0 0 chr4 47392173 47392196 -136896466 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4238 219 32 23 chr4 47392201 47393442 -136895220 + L1MA7 LINE L1 5039 6291 0 298 273 11 11 chr4 47394994 47395082 -136893580 + MIR SINE MIR 121 208 -54 187 283 38 0 chr4 47396005 47396058 -136892604 + L2 LINE L2 2927 2981 -291 370 287 9 19 chr4 47396094 47396202 -136892460 - L2 LINE L2 -5 3308 3202 28 0 0 0 chr4 47396430 47396458 -136892204 + AT_rich Low_complexity Low_complexity 1 28 0 366 365 95 32 chr4 47396529 47397006 -136891656 - L2 LINE L2 -1 3271 2737 1185 81 6 0 chr4 47397006 47397167 -136891495 - L1PA7 LINE L1 -7 6147 5986 366 365 95 32 chr4 47397167 47397230 -136891432 - L2 LINE L2 -535 2737 2679 681 196 76 31 chr4 47397252 47397477 -136891185 - L1MCa LINE L1 -4926 1500 1266 240 35 0 0 chr4 47397484 47397513 -136891149 + (TG)n Simple_repeat Simple_repeat 2 30 0 528 59 0 0 chr4 47397572 47397640 -136891022 + (TA)n Simple_repeat Simple_repeat 2 69 0 349 323 73 24 chr4 47397836 47398000 -136890662 - MLT1J LTR MaLR -144 367 196 703 319 10 5 chr4 47398233 47398437 -136890225 - MIR SINE MIR -56 206 2 279 229 96 0 chr4 47398808 47398891 -136889771 + MIR SINE MIR 101 191 -71 356 333 41 40 chr4 47400733 47400996 -136887666 + MIR SINE MIR 2 262 0 249 167 106 0 chr4 47401170 47401236 -136887426 + HSAT6 Satellite Satellite 26 98 -28 669 236 37 42 chr4 47401797 47401988 -136886674 - MER102a DNA MER1_type 0 330 141 255 344 8 24 chr4 47402387 47402512 -136886150 - MIR SINE MIR -50 212 90 33 66 0 0 chr4 47403064 47403125 -136885537 + AT_rich Low_complexity Low_complexity 1 61 0 25 0 0 0 chr4 47403598 47403623 -136885039 + AT_rich Low_complexity Low_complexity 1 25 0 2441 285 158 39 chr4 47404081 47404767 -136883895 - L2 LINE L2 0 3313 2710 1111 205 19 129 chr4 47404767 47405187 -136883475 + MLT1A2 LTR MaLR 1 374 0 2441 285 158 39 chr4 47405187 47406225 -136882437 - L2 LINE L2 -603 2710 1372 317 343 56 7 chr4 47406324 47406467 -136882195 + MLT1K LTR MaLR 114 263 -325 683 269 6 22 chr4 47406977 47407159 -136881503 - MIR SINE MIR -74 188 10 542 293 35 66 chr4 47407372 47407628 -136881034 + MLT1J LTR MaLR 230 477 -34 2317 89 0 0 chr4 47407858 47408161 -136880501 - AluY SINE Alu -8 303 1 22 0 0 0 chr4 47408211 47408233 -136880429 + AT_rich Low_complexity Low_complexity 1 22 0 43 56 0 0 chr4 47408878 47408949 -136879713 + AT_rich Low_complexity Low_complexity 1 71 0 21 57 0 0 chr4 47409271 47409306 -136879356 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr4 47409429 47409453 -136879209 + AT_rich Low_complexity Low_complexity 1 24 0 3723 226 32 20 chr4 47410056 47411362 -136877300 - L1MB5 LINE L1 -11 6163 4847 489 122 37 0 chr4 47411361 47411443 -136877219 - L1P LINE L1 -1417 4729 4645 * 305 97 0 139 chr4 47411461 47411479 -136877183 + L1 LINE L1 4515 4534 -1612 3602 12 0 0 chr4 47411479 47411891 -136876771 + L1PA3 LINE L1 5744 6155 0 305 97 0 139 chr4 47411891 47411918 -136876744 + L1 LINE L1 4534 4549 -1597 2222 152 5 19 chr4 47411918 47412287 -136876375 - THE1B LTR MaLR 0 364 1 305 97 0 139 chr4 47412287 47412312 -136876350 + L1 LINE L1 4549 4576 -1570 1041 178 0 0 chr4 47412315 47412506 -136876156 - L1P LINE L1 -1752 4394 4204 5751 111 21 1 chr4 47412506 47413807 -136874855 + L1PA13 LINE L1 4833 6153 -10 1893 244 13 42 chr4 47413821 47413978 -136874684 - L1MB5 LINE L1 -1287 4859 4699 279 0 0 0 chr4 47413978 47414009 -136874653 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2064 62 41 17 chr4 47414012 47414302 -136874360 - AluY SINE Alu -14 297 1 1893 244 13 42 chr4 47414302 47414762 -136873900 - L1MB5 LINE L1 -1449 4697 4256 1273 261 33 4 chr4 47414973 47415428 -136873234 - L1MB5 LINE L1 -2277 3869 3402 2911 119 25 5 chr4 47415476 47415874 -136872788 + MLT2A2 LTR ERVL 1 410 -43 312 91 0 0 chr4 47415874 47415918 -136872744 + (TA)n Simple_repeat Simple_repeat 2 45 0 2911 119 25 5 chr4 47415918 47415963 -136872699 + MLT2A2 LTR ERVL 410 453 0 4636 108 0 1 chr4 47415963 47416611 -136872051 + HERVL-A2-A2 LTR ERVL 1 647 -5007 33665 91 19 4 chr4 47416611 47421183 -136867479 + HERVL-A2-A2 LTR ERVL 1017 5654 0 2947 87 13 3 chr4 47421183 47421574 -136867088 + MLT2A2 LTR ERVL 1 395 -58 360 0 0 0 chr4 47421574 47421614 -136867048 + (TA)n Simple_repeat Simple_repeat 2 41 0 1841 253 51 8 chr4 47421695 47422327 -136866335 - L1MB5 LINE L1 -2835 3311 2653 24 96 0 0 chr4 47423074 47423147 -136865515 + AT_rich Low_complexity Low_complexity 1 73 0 22 70 0 0 chr4 47423326 47423369 -136865293 + AT_rich Low_complexity Low_complexity 1 43 0 204 171 24 0 chr4 47424135 47424176 -136864486 + (TAA)n Simple_repeat Simple_repeat 1 42 0 1071 217 21 69 chr4 47425094 47425426 -136863236 + L1MA10 LINE L1 6019 6334 0 201 328 0 0 chr4 47425432 47425493 -136863169 - MIR SINE MIR -8 254 194 372 367 63 38 chr4 47425495 47425994 -136862668 + L2 LINE L2 2732 3272 0 1575 174 31 0 chr4 47426158 47426445 -136862217 - AluJo SINE Alu -4 308 13 21 0 0 0 chr4 47427800 47427821 -136860841 + AT_rich Low_complexity Low_complexity 1 21 0 1101 193 16 49 chr4 47427936 47428180 -136860482 - MER46A DNA MER2_type 0 236 1 211 208 0 0 chr4 47428555 47428608 -136860054 + T-rich Low_complexity Low_complexity 1 53 0 2312 74 10 0 chr4 47428745 47429041 -136859621 + AluSc SINE Alu 1 299 -10 329 247 213 53 chr4 47429120 47429222 -136859440 - MER5A DNA MER1_type 0 189 105 2505 30 7 0 chr4 47429222 47429522 -136859140 + L1PA4 LINE L1 5854 6155 0 329 247 213 53 chr4 47429522 47429569 -136859093 - MER5A DNA MER1_type -84 105 16 183 129 0 0 chr4 47431180 47431211 -136857451 + (TATATG)n Simple_repeat Simple_repeat 3 33 0 247 273 61 0 chr4 47431663 47431729 -136856933 + L2 LINE L2 3171 3240 -32 21 0 0 0 chr4 47434553 47434574 -136854088 + AT_rich Low_complexity Low_complexity 1 21 0 283 176 54 14 chr4 47435717 47435791 -136852871 + MER116 DNA Mariner 3 79 -1 1972 135 0 0 chr4 47435914 47436202 -136852460 + AluSx SINE Alu 1 288 -24 387 0 0 0 chr4 47437214 47437257 -136851405 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 282 217 0 0 chr4 47437263 47437332 -136851330 + A-rich Low_complexity Low_complexity 1 69 0 270 125 0 0 chr4 47437659 47437707 -136850955 + (TC)n Simple_repeat Simple_repeat 2 49 0 24 32 0 0 chr4 47438564 47438595 -136850067 + AT_rich Low_complexity Low_complexity 1 31 0 5299 130 31 13 chr4 47438596 47439472 -136849190 - L1PA16 LINE L1 -10 6156 5265 411 345 56 35 chr4 47439923 47440033 -136848629 - L1ME3A LINE L1 -233 5937 5831 216 97 0 0 chr4 47440033 47440064 -136848598 + (CA)n Simple_repeat Simple_repeat 2 32 0 411 345 56 35 chr4 47440064 47440327 -136848335 - L1ME3A LINE L1 -339 5831 5684 1036 263 9 0 chr4 47440367 47440584 -136848078 - MER58A DNA MER1_type 0 224 6 266 328 97 18 chr4 47440588 47440920 -136847742 - L1ME3A LINE L1 -597 5569 5299 1149 302 149 12 chr4 47441410 47442068 -136846594 + Charlie7 DNA MER1_type 1 748 -1864 262 272 0 25 chr4 47442075 47442156 -136846506 + Charlie7 DNA MER1_type 2108 2186 -426 32 26 0 0 chr4 47442223 47442262 -136846400 + AT_rich Low_complexity Low_complexity 1 39 0 25 0 0 0 chr4 47442353 47442378 -136846284 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr4 47442392 47442415 -136846247 + AT_rich Low_complexity Low_complexity 1 23 0 229 359 103 0 chr4 47443009 47443126 -136845536 - MIR3 SINE MIR -37 171 43 21 0 0 0 chr4 47443900 47443921 -136844741 + AT_rich Low_complexity Low_complexity 1 21 0 3561 205 107 19 chr4 47444284 47445580 -136843082 + L1MA9 LINE L1 4888 6274 -38 531 283 7 7 chr4 47445703 47445855 -136842807 + MIR SINE MIR 86 237 -25 256 349 28 28 chr4 47446719 47446825 -136841837 + L2 LINE L2 3208 3313 0 37 62 0 0 chr4 47447071 47447136 -136841526 + AT_rich Low_complexity Low_complexity 1 65 0 196 365 19 0 chr4 47447969 47448073 -136840589 - L2 LINE L2 -287 2985 2880 302 332 141 10 chr4 47448073 47448386 -136840276 + L2 LINE L2 1690 2043 -1271 4729 155 26 14 chr4 47448662 47450237 -136838425 - L1PA16 LINE L1 0 6166 4591 698 289 138 52 chr4 47450675 47451218 -136837444 + L2 LINE L2 2065 2654 -660 267 152 0 0 chr4 47452368 47452414 -136836248 + (TG)n Simple_repeat Simple_repeat 2 47 0 1061 23 0 8 chr4 47452722 47452852 -136835810 - L1PA2 LINE L1 0 6155 6027 648 232 11 74 chr4 47453264 47453454 -136835208 + LTR41 LTR ERVL 6 183 -590 402 74 0 0 chr4 47454641 47454695 -136833967 + (TA)n Simple_repeat Simple_repeat 1 54 0 243 0 0 0 chr4 47454694 47454721 -136833941 + (GA)n Simple_repeat Simple_repeat 2 28 0 * 1451 199 44 4 chr4 47455862 47456133 -136832529 - AluJb SINE Alu -30 282 1 23 33 0 0 chr4 47456456 47456486 -136832176 + AT_rich Low_complexity Low_complexity 1 30 0 516 282 84 20 chr4 47457784 47457986 -136830676 - MIR SINE MIR -18 244 30 23 0 0 0 chr4 47458201 47458224 -136830438 + AT_rich Low_complexity Low_complexity 1 23 0 605 247 46 23 chr4 47458252 47458426 -136830236 + MER45A DNA AcHobo 1 178 0 273 257 14 0 chr4 47459234 47459304 -136829358 + GA-rich Low_complexity Low_complexity 4 74 0 2239 109 10 0 chr4 47459579 47459881 -136828781 - AluSq SINE Alu -8 305 1 436 308 111 57 chr4 47459898 47460285 -136828377 + L2 LINE L2 2906 3313 0 198 0 0 0 chr4 47461761 47461783 -136826879 + (A)n Simple_repeat Simple_repeat 1 22 0 186 43 0 0 chr4 47463164 47463187 -136825475 + (TGAG)n Simple_repeat Simple_repeat 1 23 0 654 192 99 29 chr4 47463293 47463465 -136825197 - MER3 DNA MER1_type -13 196 13 328 312 65 14 chr4 47463472 47463610 -136825052 + L2 LINE L2 3169 3313 0 226 236 31 79 chr4 47463635 47463762 -136824900 - L2 LINE L2 -81 3232 3112 994 317 205 0 chr4 47463765 47464288 -136824374 + L2 LINE L2 1989 2618 -696 1127 203 27 4 chr4 47464326 47464587 -136824075 - L1MB7 LINE L1 -5 6179 5913 840 241 25 0 chr4 47464594 47464835 -136823827 - L1M4 LINE L1 -2163 4481 4235 * 4535 236 68 52 chr4 47464829 47466468 -136822194 - L1M4 LINE L1 -4863 1679 16 435 282 81 79 chr4 47466489 47466766 -136821896 + L2 LINE L2 2697 3005 -308 1507 192 0 48 chr4 47466771 47467084 -136821578 - AluJo SINE Alu -14 298 1 227 274 14 0 chr4 47467098 47467171 -136821491 - MIR SINE MIR -5 257 184 * 350 358 53 43 chr4 47467162 47467464 -136821198 + L2 LINE L2 3004 3308 -5 327 269 134 27 chr4 47467760 47467909 -136820753 + MIR SINE MIR 68 232 -30 433 276 96 0 chr4 47468015 47468171 -136820491 + MIR SINE MIR 92 262 0 324 311 104 81 chr4 47468258 47468924 -136819738 - L2 LINE L2 -1192 2122 1442 2125 138 47 14 chr4 47469070 47469433 -136819229 + THE1C LTR MaLR 1 375 0 903 301 125 11 chr4 47469523 47469875 -136818787 + LTR16C LTR ERVL 86 477 -14 187 77 0 77 chr4 47470696 47470761 -136817901 + (TTTA)n Simple_repeat Simple_repeat 3 62 0 5375 203 42 5 chr4 47470841 47472046 -136816616 + L1 LINE L1 4071 5320 -826 7591 30 0 0 chr4 47472046 47473057 -136815605 + L1PA4 LINE L1 5142 6152 -3 1935 149 40 0 chr4 47473067 47473395 -136815267 + Tigger1 DNA MER2_type 2078 2418 0 253 206 16 24 chr4 47474546 47474672 -136813990 + (TA)n Simple_repeat Simple_repeat 1 125 0 217 205 0 84 chr4 47477028 47477111 -136811551 + CT-rich Low_complexity Low_complexity 3 78 0 8496 44 0 5 chr4 47477234 47478312 -136810350 - L1P LINE L1 -1362 4784 3712 211 303 142 25 chr4 47478435 47478597 -136810065 + L2 LINE L2 1895 2075 -1239 1509 197 3 31 chr4 47478854 47479167 -136809495 - AluJo SINE Alu 0 305 1 218 302 120 57 chr4 47479185 47479553 -136809109 + L2 LINE L2 2551 2941 -373 327 188 0 16 chr4 47479828 47479892 -136808770 + MIR SINE MIR 86 148 -114 468 235 139 67 chr4 47480402 47480787 -136807875 + MLT1J2 LTR MaLR 75 450 0 320 276 18 74 chr4 47480809 47480972 -136807690 - L2 LINE L2 -5 3308 3155 666 319 55 4 chr4 47481101 47481336 -136807326 - MIR SINE MIR -14 248 2 226 52 69 17 chr4 47484028 47484086 -136804576 + T-rich Low_complexity Low_complexity 4 64 0 404 296 0 0 chr4 47484486 47484584 -136804078 + MIR SINE MIR 34 131 -131 538 198 18 9 chr4 47484585 47484696 -136803966 - L2 LINE L2 -2 3311 3200 2216 105 16 0 chr4 47484704 47485008 -136803654 - AluSc SINE Alu 0 309 1 213 253 69 46 chr4 47485071 47485158 -136803504 + MIR SINE MIR 165 253 -9 2062 86 0 0 chr4 47486732 47486989 -136801673 + AluY SINE Alu 47 303 -8 432 188 30 0 chr4 47487186 47487287 -136801375 + L1MA10 LINE L1 6205 6308 -26 2292 138 5 19 chr4 47487287 47487656 -136801006 + THE1B LTR MaLR 1 364 0 10892 109 14 2 chr4 47487656 47489217 -136799445 + THE1B-int LTR MaLR 1 1580 0 1851 136 7 55 chr4 47489235 47489544 -136799118 + THE1B LTR MaLR 71 364 0 232 306 14 28 chr4 47489883 47489955 -136798707 - L2 LINE L2 -4 3309 3239 544 326 59 5 chr4 47491165 47491386 -136797276 + MIR SINE MIR 19 251 -11 1839 213 152 18 chr4 47491416 47491990 -136796672 - MLT1E2 LTR MaLR -5 621 2 416 362 33 21 chr4 47492602 47492845 -136795817 - MIR SINE MIR -16 246 1 331 330 84 21 chr4 47493556 47493747 -136794915 + MIR SINE MIR 22 224 -38 196 278 93 0 chr4 47494415 47494469 -136794193 - L2 LINE L2 -48 3224 3166 1087 271 21 51 chr4 47494880 47495216 -136793446 + MLT1I LTR MaLR 1 326 -83 208 318 136 15 chr4 47495525 47495657 -136793005 + MER5A DNA MER1_type 14 161 -28 477 288 96 45 chr4 47495691 47496004 -136792658 + MER102a DNA MER1_type 1 329 -1 299 295 36 22 chr4 47496248 47496387 -136792275 - Charlie8 DNA MER1_type -2160 257 117 203 327 0 0 chr4 47496907 47496959 -136791703 - L2 LINE L2 -254 3059 3008 231 335 64 27 chr4 47497249 47497437 -136791225 - L2 LINE L2 -1057 2257 2063 221 0 35 0 chr4 47497944 47497973 -136790689 + (CA)n Simple_repeat Simple_repeat 1 30 0 265 267 76 19 chr4 47497986 47498091 -136790571 - MIR3 SINE MIR -17 191 81 432 239 11 0 chr4 47499004 47499096 -136789566 + MER5A DNA MER1_type 11 103 -86 217 289 74 44 chr4 47499080 47499215 -136789447 - MIR SINE MIR -58 204 66 * 254 248 35 14 chr4 47499420 47499534 -136789128 + MLT1L LTR MaLR 234 430 -185 23 33 0 0 chr4 47500576 47500606 -136788056 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr4 47501963 47501985 -136786677 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr4 47502267 47502312 -136786350 + AT_rich Low_complexity Low_complexity 1 45 0 294 345 0 0 chr4 47502865 47502949 -136785713 + L2 LINE L2 3187 3270 -2 1589 163 26 62 chr4 47503655 47503788 -136784874 + AluJb SINE Alu 1 137 -165 6916 69 42 24 chr4 47503788 47505543 -136783119 + SVA Other Other 1 1380 -6 1589 163 26 62 chr4 47505543 47505715 -136782947 + AluJb SINE Alu 137 296 -6 522 283 78 19 chr4 47507366 47507571 -136781091 - MIR SINE MIR -1 261 45 356 274 19 28 chr4 47508564 47508670 -136779992 - MIR SINE MIR -118 144 40 850 278 63 71 chr4 47508862 47509487 -136779175 - L2 LINE L2 -6 3307 2693 415 302 83 0 chr4 47510013 47510206 -136778456 - MIR SINE MIR -12 250 43 198 243 243 20 chr4 47510909 47511057 -136777605 - MIR SINE MIR -71 191 11 279 0 0 0 chr4 47511952 47511983 -136776679 + (TA)n Simple_repeat Simple_repeat 1 31 0 38 81 0 0 chr4 47512267 47512354 -136776308 + AT_rich Low_complexity Low_complexity 1 87 0 186 133 0 0 chr4 47515093 47515123 -136773539 + (A)n Simple_repeat Simple_repeat 1 30 0 294 29 0 0 chr4 47515792 47515827 -136772835 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 234 91 0 0 chr4 47515970 47516003 -136772659 + (GGAGA)n Simple_repeat Simple_repeat 4 36 0 540 0 0 0 chr4 47516676 47516736 -136771926 + (GA)n Simple_repeat Simple_repeat 1 60 0 315 71 0 0 chr4 47516864 47516906 -136771756 + (GGA)n Simple_repeat Simple_repeat 1 42 0 246 236 24 0 chr4 47520068 47520191 -136768471 + (TA)n Simple_repeat Simple_repeat 2 127 0 601 255 163 0 chr4 47521302 47521486 -136767176 - MIR SINE MIR -43 219 6 408 40 0 0 chr4 47522161 47522211 -136766451 + (CA)n Simple_repeat Simple_repeat 1 50 0 247 292 89 74 chr4 47522230 47522432 -136766230 + L2 LINE L2 2523 2727 -587 234 191 0 0 chr4 47522555 47522602 -136766060 + (CA)n Simple_repeat Simple_repeat 2 48 0 1568 191 96 6 chr4 47522915 47523250 -136765412 - MLT1A1 LTR MaLR 0 365 1 2006 186 66 10 chr4 47523393 47523802 -136764860 + MSTB1 LTR MaLR 1 432 0 532 340 97 0 chr4 47523861 47524067 -136764595 + MIR SINE MIR 16 241 -21 811 316 31 28 chr4 47525116 47525508 -136763154 + MLT1I LTR MaLR 10 402 -7 219 253 187 22 chr4 47526323 47526414 -136762248 + L2 LINE L2 3199 3304 -9 427 333 54 93 chr4 47526495 47527148 -136761514 + L2 LINE L2 2620 3263 -9 2114 125 3 0 chr4 47527451 47527746 -136760916 - AluSg1 SINE Alu -1 308 13 565 128 0 21 chr4 47529198 47529292 -136759370 + LTR26E LTR ERV1 1 92 -530 448 363 4 4 chr4 47529298 47529524 -136759138 - LTR26E-int LTR ERV1 -512 7608 7383 484 321 46 53 chr4 47529626 47530171 -136758491 - LTR26E-int LTR ERV1 -1964 5826 4822 1077 344 36 35 chr4 47530481 47531395 -136757267 - LTR26E-int LTR ERV1 -2837 4285 3510 210 143 0 0 chr4 47531480 47531515 -136757147 + (TA)n Simple_repeat Simple_repeat 1 35 0 596 113 0 0 chr4 47531515 47531612 -136757050 - L1MA1 LINE L1 0 6302 6206 33406 107 11 8 chr4 47531656 47537779 -136750883 + L1PA6 LINE L1 11 6154 0 569 338 48 35 chr4 47537790 47538455 -136750207 - LTR26E-int LTR ERV1 -3855 3267 2654 384 333 5 42 chr4 47540518 47540710 -136747952 - LTR26E-int LTR ERV1 -4977 969 785 297 350 38 31 chr4 47541098 47541258 -136747404 - LTR26E-int LTR ERV1 -6067 196 36 2884 174 45 11 chr4 47541297 47541870 -136746792 - LTR26E LTR ERV1 0 622 30 602 164 10 0 chr4 47541870 47541974 -136746688 - AluSg/x SINE Alu -8 304 200 1422 206 24 45 chr4 47542926 47543078 -136745584 - AluJo SINE Alu -26 286 141 2278 85 0 7 chr4 47543078 47543371 -136745291 - AluY SINE Alu -20 291 1 1422 206 24 45 chr4 47543371 47543510 -136745152 - AluJo SINE Alu -171 141 1 416 321 61 38 chr4 47544058 47544245 -136744417 - MIR SINE MIR 0 262 68 785 193 69 69 chr4 47544245 47544520 -136744142 + ORSL DNA AcHobo 1 275 0 416 321 61 38 chr4 47544520 47544544 -136744118 - MIR SINE MIR -194 68 46 228 111 0 0 chr4 47544752 47544788 -136743874 + (A)n Simple_repeat Simple_repeat 1 36 0 25 65 0 0 chr4 47545342 47545388 -136743274 + AT_rich Low_complexity Low_complexity 1 46 0 27 29 0 0 chr4 47545444 47545478 -136743184 + AT_rich Low_complexity Low_complexity 1 34 0 314 293 21 107 chr4 47545562 47545804 -136742858 + L2 LINE L2 359 579 -2735 1151 291 36 22 chr4 47545844 47545909 -136742753 + L2 LINE L2 2254 2317 -997 1600 153 206 19 chr4 47545909 47546269 -136742393 - MSTA LTR MaLR 0 428 2 1151 291 36 22 chr4 47546269 47546619 -136742043 + L2 LINE L2 2317 2675 -639 588 323 52 3 chr4 47546883 47547211 -136741451 - HAL1 LINE L1 -108 2399 2056 217 328 43 35 chr4 47547367 47547483 -136741179 + MIR SINE MIR 76 192 -70 390 254 92 22 chr4 47547839 47548024 -136740638 - L1MD3 LINE L1 -2 7993 7796 627 250 119 8 chr4 47548069 47548313 -136740349 - L1ME3A LINE L1 -57 6113 5843 2566 95 8 11 chr4 47548445 47548814 -136739848 - L1PB1 LINE L1 -2 6149 5782 351 168 34 54 chr4 47548814 47548963 -136739699 + (TA)n Simple_repeat Simple_repeat 1 146 0 7130 176 9 12 chr4 47548964 47550947 -136737715 - L1PB1 LINE L1 -361 5790 3818 290 359 71 18 chr4 47550960 47551130 -136737532 - MLT1J2 LTR MaLR -3 447 269 275 314 99 8 chr4 47551141 47551262 -136737400 - MLT1I LTR MaLR -196 213 82 272 311 0 14 chr4 47551605 47551679 -136736983 - L2 LINE L2 -1 3312 3240 24 0 0 0 chr4 47552286 47552310 -136736352 + AT_rich Low_complexity Low_complexity 1 24 0 246 343 192 0 chr4 47553406 47553604 -136735058 + MIR SINE MIR 16 251 -11 31 26 0 0 chr4 47554013 47554051 -136734611 + AT_rich Low_complexity Low_complexity 1 38 0 279 215 0 0 chr4 47554536 47554601 -136734061 + CT-rich Low_complexity Low_complexity 1 65 0 22 56 0 0 chr4 47554713 47554749 -136733913 + AT_rich Low_complexity Low_complexity 1 36 0 2045 134 0 0 chr4 47555299 47555638 -136733024 - AluSx SINE Alu 0 339 1 1136 281 82 84 chr4 47555765 47556042 -136732620 + L2 LINE L2 2037 2313 -1000 974 211 156 46 chr4 47556042 47556369 -136732293 + MLT1A1 LTR MaLR 1 363 -2 1136 281 82 84 chr4 47556369 47557347 -136731315 + L2 LINE L2 2313 3313 0 363 154 0 0 chr4 47558433 47558498 -136730164 + (CA)n Simple_repeat Simple_repeat 2 66 0 1145 184 24 0 chr4 47559244 47559494 -136729168 - L1MA9 LINE L1 0 6312 6057 611 324 101 37 chr4 47559495 47559900 -136728762 + MLT1L LTR MaLR 167 597 -18 25 0 0 0 chr4 47559947 47559972 -136728690 + AT_rich Low_complexity Low_complexity 1 25 0 273 333 78 26 chr4 47560659 47560851 -136727811 - L2 LINE L2 -500 2814 2613 3968 195 46 57 chr4 47561150 47562447 -136726215 - L1MA9 LINE L1 -42 6270 4980 456 237 94 54 chr4 47562558 47562773 -136725889 + MIR SINE MIR 39 262 0 7463 36 0 0 chr4 47563208 47564399 -136724263 - L1PA3 LINE L1 0 6155 4963 8594 32 3 1 chr4 47564401 47565433 -136723229 + L1PA3 LINE L1 3942 4975 -1171 492 220 24 70 chr4 47565873 47566097 -136722565 - MER5C DNA MER1_type -2 322 4 681 239 34 6 chr4 47566193 47566369 -136722293 - L1MB1 LINE L1 0 6168 5988 23 0 0 53 chr4 47566375 47566391 -136722271 + AT_rich Low_complexity Low_complexity 1 16 -20 2013 131 0 0 chr4 47566391 47566732 -136721930 - AluSx SINE Alu 0 341 1 23 0 0 53 chr4 47566732 47566752 -136721910 + AT_rich Low_complexity Low_complexity 16 36 0 234 0 0 0 chr4 47567018 47567044 -136721618 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 30 0 0 0 chr4 47567054 47567084 -136721578 + AT_rich Low_complexity Low_complexity 1 30 0 1433 50 0 0 chr4 47567084 47567264 -136721398 - L1PA2 LINE L1 0 6155 5976 1511 0 0 0 chr4 47567264 47567433 -136721229 + L1PA2 LINE L1 5801 5969 -186 21 36 0 0 chr4 47567770 47567798 -136720864 + AT_rich Low_complexity Low_complexity 1 28 0 3727 115 62 2 chr4 47568849 47569449 -136719213 - L1MA3 LINE L1 -7 6298 5663 492 303 46 50 chr4 47569541 47569782 -136718880 - MIR SINE MIR -3 259 20 1817 146 18 4 chr4 47570735 47571038 -136717624 + AluSx SINE Alu 1 307 0 36 40 0 0 chr4 47571219 47571269 -136717393 + AT_rich Low_complexity Low_complexity 1 50 0 247 332 96 21 chr4 47572049 47572236 -136716426 - MIR SINE MIR -56 206 6 29 0 0 0 chr4 47572362 47572391 -136716271 + AT_rich Low_complexity Low_complexity 1 29 0 22 56 0 0 chr4 47572418 47572454 -136716208 + AT_rich Low_complexity Low_complexity 1 36 0 315 282 37 86 chr4 47573360 47573523 -136715139 + MIR SINE MIR 99 253 -9 23 33 0 0 chr4 47574242 47574272 -136714390 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr4 47574430 47574451 -136714211 + AT_rich Low_complexity Low_complexity 1 21 0 2425 74 3 6 chr4 47575926 47576238 -136712424 + AluY SINE Alu 1 311 0 22 35 0 0 chr4 47576314 47576343 -136712319 + AT_rich Low_complexity Low_complexity 1 29 0 725 189 126 15 chr4 47576429 47576503 -136712159 + L1MA9 LINE L1 6078 6142 -170 243 0 0 0 chr4 47576503 47576530 -136712132 + (CA)n Simple_repeat Simple_repeat 1 27 0 725 189 126 15 chr4 47576530 47576661 -136712001 + L1MA9 LINE L1 6142 6306 -6 2182 113 7 0 chr4 47577095 47577396 -136711266 + AluSp SINE Alu 1 303 -10 2066 106 3 0 chr4 47578481 47578765 -136709897 + AluSp SINE Alu 1 285 -28 23 54 0 0 chr4 47579038 47579075 -136709587 + AT_rich Low_complexity Low_complexity 1 37 0 26 30 0 0 chr4 47579825 47579858 -136708804 + AT_rich Low_complexity Low_complexity 1 33 0 452 327 6 42 chr4 47580814 47580982 -136707680 - MLT1J2 LTR MaLR -269 181 20 26 30 0 0 chr4 47581883 47581916 -136706746 + AT_rich Low_complexity Low_complexity 1 33 0 560 341 54 42 chr4 47581984 47582482 -136706180 + L1M3b LINE L1 1216 1719 -5777 5341 224 50 33 chr4 47582940 47585844 -136702818 + L1M3b LINE L1 2097 4943 -2622 2190 128 0 0 chr4 47585848 47586154 -136702508 + AluSx SINE Alu 6 311 -1 23 0 0 0 chr4 47686468 47686491 -136602171 + AT_rich Low_complexity Low_complexity 1 23 0 2085 121 17 0 chr4 47686495 47686792 -136601870 + AluSx SINE Alu 1 302 -10 2472 76 0 0 chr4 47687792 47688095 -136600567 - AluY SINE Alu -8 303 1 1440 157 21 0 chr4 47688984 47689265 -136599397 + L1MA4 LINE L1 6008 6294 -6 2296 100 3 3 chr4 47690509 47690818 -136597844 + AluSp SINE Alu 1 309 -4 1726 63 5 0 chr4 47691233 47691456 -136597206 - L1PA7 LINE L1 -5 6149 5926 625 308 85 5 chr4 47691653 47691864 -136596798 - MIR SINE MIR -18 244 17 183 350 41 16 chr4 47693877 47694000 -136594662 - MIR SINE MIR -65 143 18 4140 179 47 22 chr4 47694188 47694671 -136593991 + L1MA9 LINE L1 5301 5819 -493 213 39 0 0 chr4 47694671 47694697 -136593965 + (CA)n Simple_repeat Simple_repeat 1 26 0 4140 179 47 22 chr4 47694697 47695125 -136593537 + L1MA9 LINE L1 5819 6235 -77 198 143 0 0 chr4 47695137 47695172 -136593490 + (TA)n Simple_repeat Simple_repeat 2 36 0 958 314 49 17 chr4 47695211 47695622 -136593040 - MLT1J LTR MaLR -37 474 51 739 170 14 41 chr4 47695766 47695913 -136592749 - FRAM SINE Alu -1 175 33 480 158 0 0 chr4 47695974 47696050 -136592612 - AluJo SINE Alu -15 297 222 * 726 134 8 39 chr4 47696048 47696175 -136592487 - AluJo SINE Alu -169 143 21 2656 194 18 24 chr4 47696599 47697381 -136591281 - L1P LINE L1 -1985 4161 3205 2482 4 0 0 chr4 47697381 47697659 -136591003 + L1HS LINE L1 5878 6155 0 1125 132 4 101 chr4 47697771 47698044 -136590618 - MER4A LTR ERV1 -99 565 261 1252 128 230 25 chr4 47698060 47698315 -136590347 + AluSx SINE Alu 1 303 0 498 116 93 0 chr4 47698316 47698402 -136590260 - MER4A LTR ERV1 -570 94 1 4320 195 14 6 chr4 47698403 47699314 -136589348 - L1P LINE L1 -3023 3123 2205 21 0 0 0 chr4 47699383 47699404 -136589258 + AT_rich Low_complexity Low_complexity 1 21 0 1695 149 0 86 chr4 47700033 47700369 -136588293 + AluJb SINE Alu 1 307 -5 255 271 0 14 chr4 47700647 47700717 -136587945 - MIR SINE MIR -108 154 86 784 201 6 13 chr4 47700775 47700934 -136587728 - FRAM SINE Alu -17 159 2 239 217 63 42 chr4 47701473 47701616 -136587046 - L1M LINE L1 -759 5405 5260 349 279 130 65 chr4 47701620 47701928 -136586734 - L1M4 LINE L1 -891 5255 4928 3481 141 29 20 chr4 47702003 47702600 -136586062 - MER7C DNA MER2_type 0 602 1 1533 134 0 0 chr4 47703029 47703253 -136585409 - AluSg/x SINE Alu -3 307 84 2337 231 16 46 chr4 47703838 47704405 -136584257 - MLT2B3 LTR ERVL 0 554 5 207 0 0 0 chr4 47705670 47705693 -136582969 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 304 385 159 13 chr4 47705695 47705921 -136582741 - L2 LINE L2 -38 3234 2976 449 299 111 18 chr4 47706197 47706414 -136582248 - MIR SINE MIR -13 249 13 21 0 0 0 chr4 47706796 47706817 -136581845 + AT_rich Low_complexity Low_complexity 1 21 0 660 293 67 38 chr4 47708130 47708369 -136580293 + MIR SINE MIR 17 262 0 470 214 26 26 chr4 47708948 47709065 -136579597 - L2 LINE L2 -3 3310 3194 1586 116 0 22 chr4 47709265 47709489 -136579173 + AluSg/x SINE Alu 82 300 -10 448 167 114 53 chr4 47709865 47709979 -136578683 - L2 LINE L2 0 3313 3193 270 364 82 29 chr4 47710193 47710509 -136578153 + L2 LINE L2 2555 2887 -427 470 175 9 35 chr4 47710641 47710755 -136577907 - L1MA4A LINE L1 -4 6299 6189 1018 434 3 9 chr4 47710791 47711107 -136577555 + L1MA9 LINE L1 5963 6276 -36 616 276 111 12 chr4 47711159 47711402 -136577260 + LTR16C LTR ERVL 225 491 0 203 344 69 91 chr4 47711408 47711815 -136576847 + L2 LINE L2 2871 3268 -4 310 284 0 0 chr4 47713515 47713582 -136575080 + L2 LINE L2 3247 3313 0 22 0 0 0 chr4 47713749 47713771 -136574891 + AT_rich Low_complexity Low_complexity 1 22 0 310 215 0 19 chr4 47714354 47714461 -136574201 + GA-rich Low_complexity Low_complexity 1 105 0 500 218 127 57 chr4 47714623 47714852 -136573810 - MLT1G1 LTR MaLR -4 591 347 1942 177 41 5 chr4 47718085 47718467 -136570195 - L1MB4 LINE L1 0 6180 5778 408 55 0 0 chr4 47718467 47718522 -136570140 + (TG)n Simple_repeat Simple_repeat 2 56 0 1942 177 41 5 chr4 47718522 47718580 -136570082 - L1MB4 LINE L1 -402 5778 5724 6097 157 37 33 chr4 47718833 47720055 -136568607 + Tigger3b DNA MER2_type 4 1230 -1 723 264 148 42 chr4 47720462 47720848 -136567814 - L1MB4 LINE L1 -2084 5724 5298 275 278 37 56 chr4 47721492 47721654 -136567008 - L1MB4 LINE L1 -1481 4665 4507 2268 167 28 26 chr4 47722502 47722582 -136566080 - MSTB LTR MaLR 0 426 348 2339 88 3 0 chr4 47722582 47722878 -136565784 + AluSp SINE Alu 5 301 -12 2268 167 28 26 chr4 47722878 47723222 -136565440 - MSTB LTR MaLR -78 348 1 7019 118 62 52 chr4 47723374 47724653 -136564009 - pTR5 LTR ERV1 -143 2295 1005 1829 178 32 87 chr4 47725385 47725741 -136562921 - MLT2D LTR ERVL 0 414 85 2593 52 0 0 chr4 47725741 47726048 -136562614 + AluY SINE Alu 1 307 -4 1829 178 32 87 chr4 47726048 47726129 -136562533 - MLT2D LTR ERVL -329 85 1 637 263 93 78 chr4 47726197 47726741 -136561921 + MLT1H1 LTR MaLR 7 537 -5 543 239 81 29 chr4 47727036 47727245 -136561417 - LTR45 LTR ERV1 -2 523 304 290 225 0 14 chr4 47727272 47727343 -136561319 - MER72 LTR ERV1 -243 479 410 450 320 75 3 chr4 47727560 47727882 -136560780 - L1ME3 LINE L1 -265 5897 5553 2292 85 0 7 chr4 47728427 47728732 -136559930 - AluY SINE Alu -8 303 1 27 29 0 0 chr4 47728882 47728916 -136559746 + AT_rich Low_complexity Low_complexity 1 34 0 1638 158 4 7 chr4 47729122 47729394 -136559268 + L1MA10 LINE L1 5519 5789 -523 219 216 0 0 chr4 47729394 47729431 -136559231 + (TG)n Simple_repeat Simple_repeat 2 38 0 259 204 0 0 chr4 47729431 47729485 -136559177 - L1MC4 LINE L1 -1339 6703 6650 * 1116 220 64 105 chr4 47729456 47729988 -136558674 + L1MA10 LINE L1 5782 6291 -43 1380 197 11 25 chr4 47731527 47731811 -136556851 + AluJo SINE Alu 9 288 -24 326 320 33 8 chr4 47731998 47732120 -136556542 - L2 LINE L2 -5 3267 3143 411 38 0 0 chr4 47732646 47732699 -136555963 + (TC)n Simple_repeat Simple_repeat 1 53 0 198 0 0 0 chr4 47732698 47732720 -136555942 + (CA)n Simple_repeat Simple_repeat 1 22 0 * 214 175 0 0 chr4 47734386 47734426 -136554236 + (TCTG)n Simple_repeat Simple_repeat 4 43 0 251 299 47 56 chr4 47735065 47735172 -136553490 - L2 LINE L2 -35 3237 3132 220 286 0 29 chr4 47735254 47735324 -136553338 - L2 LINE L2 -70 3243 3176 1325 176 10 35 chr4 47735475 47735788 -136552874 - pTR5 LTR ERV1 -1374 1064 760 734 241 83 32 chr4 47735788 47736041 -136552621 + MLT1J1 LTR MaLR 181 446 0 2403 93 0 0 chr4 47736310 47736620 -136552042 - AluSg SINE Alu 0 310 1 207 294 43 43 chr4 47736967 47737059 -136551603 + L2 LINE L2 3002 3093 -220 391 314 68 8 chr4 47738164 47738282 -136550380 - MIR SINE MIR -63 145 21 2174 96 10 23 chr4 47738340 47738643 -136550019 - AluSx SINE Alu -13 299 1 207 0 0 0 chr4 47739402 47739425 -136549237 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 779 327 64 55 chr4 47741137 47742033 -136546629 - L2 LINE L2 0 3313 2392 2153 276 184 35 chr4 47742039 47743434 -136545228 - L2 LINE L2 -94 3219 1609 185 0 40 0 chr4 47743591 47743616 -136545046 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 26 30 0 0 chr4 47744323 47744356 -136544306 + AT_rich Low_complexity Low_complexity 1 33 0 300 284 108 51 chr4 47744366 47744951 -136543711 - L1MC4a LINE L1 -300 5870 5289 236 195 0 0 chr4 47746088 47746129 -136542533 - L2 LINE L2 -17 3255 3215 480 288 146 26 chr4 47746349 47746582 -136542080 + MIR SINE MIR 1 261 -1 644 315 31 23 chr4 47746639 47746896 -136541766 + L2 LINE L2 2543 2801 -513 2039 164 40 24 chr4 47746970 47747347 -136541315 - MLT1B LTR MaLR -7 383 1 315 341 0 7 chr4 47747533 47747671 -136540991 + L2 LINE L2 2838 2974 -339 2334 76 3 7 chr4 47748030 47748331 -136540331 + AluY SINE Alu 1 300 -11 1982 68 0 0 chr4 47750812 47751064 -136537598 + L1PA5 LINE L1 5902 6153 -1 722 273 88 4 chr4 47751065 47751124 -136537538 - MIR SINE MIR 0 262 209 6220 57 6 1 chr4 47751124 47751909 -136536753 + L1PA7 LINE L1 5362 6150 -4 722 273 88 4 chr4 47751909 47752087 -136536575 - MIR SINE MIR -53 209 5 513 198 0 0 chr4 47752151 47752237 -136536425 - MER66B LTR ERV1 0 486 401 7118 184 17 14 chr4 47752247 47754549 -136534113 - L1PA14 LINE L1 0 6161 3841 10675 199 16 9 chr4 47754550 47757049 -136531613 + L1PA14 LINE L1 2765 5279 -2305 753 255 140 25 chr4 47757051 47757363 -136531299 - MER66A LTR ERV1 -105 373 97 10020 173 23 32 chr4 47757409 47759274 -136529388 - MER66A-int LTR ERV1 0 6676 4828 2617 162 22 12 chr4 47759274 47759769 -136528893 + L1PB3 LINE L1 5650 6149 -5 2194 56 30 0 chr4 47759794 47760097 -136528565 + AluY SINE Alu 3 313 0 1183 226 4 12 chr4 47760382 47760705 -136527957 - MER66A-int LTR ERV1 -1580 6176 4608 481 165 51 0 chr4 47760706 47760785 -136527877 - MER4B LTR ERV1 -449 161 79 569 216 0 9 chr4 47760788 47760904 -136527758 - MER66A-int LTR ERV1 -2243 4433 4319 2272 161 20 16 chr4 47761014 47761842 -136526820 - MER66A-int LTR ERV1 -529 4351 1199 2228 129 55 32 chr4 47761844 47762278 -136526384 - MER4B-int LTR ERV1 -218 1568 1125 519 278 10 76 chr4 47762287 47762485 -136526177 - MER66A-int LTR ERV1 -3574 3102 2918 6088 223 60 67 chr4 47762487 47764373 -136524289 - MER66A-int LTR ERV1 -4803 1873 1 1485 220 104 22 chr4 47764374 47764795 -136523867 - MER66A LTR ERV1 -1 521 97 397 292 16 22 chr4 47764953 47765100 -136523562 - MIR SINE MIR -46 162 20 1782 154 11 7 chr4 47766058 47766338 -136522324 + AluSx SINE Alu 1 281 -31 245 295 115 39 chr4 47766874 47767030 -136521632 - MIR3 SINE MIR -5 203 36 23 0 0 0 chr4 47767044 47767067 -136521595 + AT_rich Low_complexity Low_complexity 1 23 0 589 294 28 0 chr4 47767168 47767345 -136521317 - MIR SINE MIR -73 189 8 35 78 0 10 chr4 47767866 47767926 -136520736 + AT_rich Low_complexity Low_complexity 1 61 -40 1874 101 8 0 chr4 47767926 47768173 -136520489 - AluSx SINE Alu -63 249 1 35 78 0 10 chr4 47768173 47768214 -136520448 + AT_rich Low_complexity Low_complexity 61 101 0 289 268 78 11 chr4 47768361 47768540 -136520122 - L1ME4a LINE L1 -240 5881 5691 191 267 228 10 chr4 47768583 47768684 -136519978 - L2 LINE L2 0 3313 3191 311 155 70 36 chr4 47768686 47768816 -136519846 + MER3 DNA MER1_type 1 203 -6 1345 233 37 79 chr4 47769432 47769985 -136518677 + L1MC4a LINE L1 6098 6601 -1184 2780 217 60 13 chr4 47769985 47770106 -136518556 + MER82 DNA MER2_type 1 115 -538 198 0 0 0 chr4 47770106 47770128 -136518534 + (CAAT)n Simple_repeat Simple_repeat 3 24 0 2780 217 60 13 chr4 47770128 47770624 -136518038 + MER82 DNA MER2_type 115 647 -6 261 57 0 0 chr4 47770630 47770665 -136517997 + (TG)n Simple_repeat Simple_repeat 2 36 0 3872 237 67 19 chr4 47770669 47771813 -136516849 + L1MC4a LINE L1 6609 7807 -1 338 226 19 0 chr4 47772949 47773055 -136515607 + (TTAAA)n Simple_repeat Simple_repeat 1 108 0 1534 47 0 0 chr4 47773339 47773530 -136515132 + L1PA4 LINE L1 5961 6151 -4 207 310 145 28 chr4 47773699 47773844 -136514818 - L2 LINE L2 -10 3303 3142 201 356 10 10 chr4 47774058 47774083 -136514579 + (TATATG)n Simple_repeat Simple_repeat 3 27 -79 1749 184 33 0 chr4 47774083 47774415 -136514247 - MER2 DNA MER2_type -1 343 1 201 356 10 10 chr4 47774415 47774493 -136514169 + (TATATG)n Simple_repeat Simple_repeat 26 106 0 226 162 0 0 chr4 47774592 47774629 -136514033 + L2 LINE L2 3277 3313 0 362 250 10 20 chr4 47775471 47775571 -136513091 + L2 LINE L2 2035 2133 -1181 1105 246 50 53 chr4 47775577 47776082 -136512580 - MLT1E LTR MaLR -3 590 8 531 229 207 38 chr4 47776088 47776402 -136512260 + L2 LINE L2 2131 2497 -817 2238 223 94 37 chr4 47777008 47777026 -136511636 + LTR68 LTR ERV1 1 17 -723 1770 167 66 14 chr4 47777026 47777373 -136511289 - MLT1A1 LTR MaLR 0 365 1 2238 223 94 37 chr4 47777373 47778054 -136510608 + LTR68 LTR ERV1 17 740 0 205 305 0 0 chr4 47778089 47778148 -136510514 + MIR SINE MIR 203 261 -1 221 169 15 108 chr4 47778962 47779027 -136509635 - L2 LINE L2 -67 3246 3188 1847 153 0 24 chr4 47779236 47779531 -136509131 + AluJo SINE Alu 3 290 -22 274 321 109 53 chr4 47779583 47779923 -136508739 - L2 LINE L2 -769 2545 2187 495 223 126 28 chr4 47782246 47782308 -136506354 - MER69 DNA AcHobo -171 2355 2300 5441 133 40 6 chr4 47782308 47784104 -136504558 - L1PA14 LINE L1 -9 6152 4331 495 223 126 28 chr4 47784104 47784288 -136504374 - MER69 DNA AcHobo -226 2300 2085 253 354 111 0 chr4 47784441 47784540 -136504122 - L2 LINE L2 -15 3257 3148 430 229 59 33 chr4 47784677 47784830 -136503832 - MER103 DNA DNA -2 164 8 2061 114 80 17 chr4 47784830 47785182 -136503480 - THE1C LTR MaLR 0 375 2 1826 291 182 20 chr4 47786431 47787560 -136501102 + L2 LINE L2 1990 3313 0 308 318 19 39 chr4 47787991 47788145 -136500517 - L1ME4a LINE L1 0 6121 5971 31 26 0 0 chr4 47788799 47788837 -136499825 + AT_rich Low_complexity Low_complexity 1 38 0 1304 80 11 0 chr4 47788837 47789013 -136499649 - L1MA2 LINE L1 -8 6296 6119 2439 70 0 10 chr4 47789213 47789525 -136499137 + AluY SINE Alu 1 309 -2 288 0 0 0 chr4 47791523 47791555 -136497107 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 49 32 0 0 chr4 47792071 47792134 -136496528 + AT_rich Low_complexity Low_complexity 1 63 0 402 173 0 0 chr4 47792547 47792622 -136496040 + (TG)n Simple_repeat Simple_repeat 2 76 0 24 32 0 0 chr4 47793637 47793668 -136494994 + AT_rich Low_complexity Low_complexity 1 31 0 234 211 40 66 chr4 47793785 47793861 -136494801 - L2 LINE L2 -6 3266 3193 727 260 151 5 chr4 47794710 47794929 -136493733 + MIR SINE MIR 12 262 0 2278 90 7 3 chr4 47795081 47795380 -136493282 + AluSq SINE Alu 1 300 -13 228 336 109 29 chr4 47795445 47795582 -136493080 - MIR3 SINE MIR -25 183 36 604 280 36 27 chr4 47795639 47795864 -136492798 + MIR SINE MIR 32 258 -4 224 329 0 0 chr4 47796509 47796579 -136492083 - L2 LINE L2 -1015 2299 2230 298 319 50 14 chr4 47797864 47798005 -136490657 - MIR SINE MIR 0 262 117 425 280 85 30 chr4 47798555 47798755 -136489907 + MIR SINE MIR 50 260 -2 214 250 16 16 chr4 47798807 47798871 -136489791 + (TA)n Simple_repeat Simple_repeat 1 64 0 400 302 148 35 chr4 47798914 47799116 -136489546 + MIR SINE MIR 6 230 -32 348 273 10 10 chr4 47799686 47799785 -136488877 + MARNA DNA Mariner 385 483 -103 208 244 0 0 chr4 47799912 47799957 -136488705 + CT-rich Low_complexity Low_complexity 2 46 0 210 71 0 0 chr4 47800565 47800593 -136488069 + (A)n Simple_repeat Simple_repeat 1 28 0 279 54 0 0 chr4 47800641 47800678 -136487984 + (TG)n Simple_repeat Simple_repeat 2 38 0 22 70 0 0 chr4 47800895 47800938 -136487724 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr4 47801080 47801108 -136487554 + AT_rich Low_complexity Low_complexity 1 28 0 549 314 84 54 chr4 47801351 47801558 -136487104 + L1M4 LINE L1 2791 2990 -3156 23 0 0 0 chr4 47801558 47801581 -136487081 + AT_rich Low_complexity Low_complexity 1 23 0 549 314 84 54 chr4 47801581 47801979 -136486683 + L1M4 LINE L1 2990 3437 -2709 380 246 44 95 chr4 47802151 47802403 -136486259 + L2 LINE L2 3075 3313 0 183 156 0 0 chr4 47802640 47802672 -136485990 + GA-rich Low_complexity Low_complexity 1 32 0 5787 172 36 17 chr4 47803013 47804103 -136484559 + L1MA6 LINE L1 4239 5381 -919 2570 110 0 0 chr4 47804103 47804458 -136484204 + THE1A LTR MaLR 1 355 0 5787 172 36 17 chr4 47804458 47805107 -136483555 + L1MA6 LINE L1 5381 6016 -284 399 299 17 57 chr4 47805219 47805396 -136483266 + L2 LINE L2 3100 3269 -3 460 229 18 28 chr4 47805806 47805915 -136482747 + MER5A DNA MER1_type 39 146 -43 276 305 32 46 chr4 47806761 47806949 -136481713 - MIR SINE MIR 0 262 23 289 184 0 0 chr4 47807241 47807290 -136481372 - MIR SINE MIR -149 113 65 2187 125 3 0 chr4 47808185 47808538 -136480124 - AluSp SINE Alu 0 354 1 21 0 0 0 chr4 47809048 47809069 -136479593 + AT_rich Low_complexity Low_complexity 1 21 0 850 173 0 11 chr4 47809551 47809730 -136478932 + CT-rich Low_complexity Low_complexity 4 180 0 28 48 0 0 chr4 47810196 47810238 -136478424 + AT_rich Low_complexity Low_complexity 1 42 0 267 54 0 0 chr4 47810251 47810288 -136478374 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 529 316 31 58 chr4 47810445 47810771 -136477891 - L2 LINE L2 -504 2810 2494 565 279 86 46 chr4 47811838 47812118 -136476544 + L3b LINE CR1 1290 1580 -3 1561 196 25 41 chr4 47813379 47813747 -136474915 - MLT1A1 LTR MaLR -3 362 1 654 317 80 5 chr4 47813747 47813971 -136474691 - MIR SINE MIR -4 258 18 1689 219 20 5 chr4 47814114 47814516 -136474146 + L1MA10 LINE L1 5925 6332 -2 201 189 0 19 chr4 47815197 47815250 -136473412 + (TA)n Simple_repeat Simple_repeat 2 53 0 211 191 0 0 chr4 47815284 47815326 -136473336 + (TG)n Simple_repeat Simple_repeat 1 42 0 25 51 0 0 chr4 47816513 47816552 -136472110 + AT_rich Low_complexity Low_complexity 1 39 0 204 247 97 84 chr4 47817152 47817306 -136471356 + MIR SINE MIR 79 234 -28 785 270 63 8 chr4 47817752 47817989 -136470673 + MIR SINE MIR 11 260 -2 237 268 108 108 chr4 47818315 47818472 -136470190 - MIR SINE MIR -75 187 31 197 326 23 35 chr4 47821471 47821557 -136467105 - MIR3 SINE MIR -116 92 8 1580 227 28 11 chr4 47822868 47823326 -136465336 - LTR37B LTR ERV1 -2 466 1 342 306 40 16 chr4 47823446 47823570 -136465092 + MIR3 SINE MIR 75 201 -7 855 264 47 80 chr4 47823945 47824308 -136464354 - MLT1H LTR MaLR -198 351 1 2071 296 63 13 chr4 47824371 47825051 -136463611 - L1MEc LINE L1 -5648 748 35 21 82 0 0 chr4 47827626 47827675 -136460987 + AT_rich Low_complexity Low_complexity 1 49 0 255 271 0 0 chr4 47828268 47828327 -136460335 - L2 LINE L2 -5 3308 3250 243 292 0 52 chr4 47829380 47829476 -136459186 - MIR3 SINE MIR -4 204 114 200 271 17 0 chr4 47829605 47829664 -136458998 - L2 LINE L2 -4 3309 3250 291 28 0 0 chr4 47829695 47829731 -136458931 + (TTG)n Simple_repeat Simple_repeat 1 36 0 23 0 0 0 chr4 47829992 47830015 -136458647 + AT_rich Low_complexity Low_complexity 1 23 0 486 49 0 0 chr4 47830026 47830087 -136458575 + (TAA)n Simple_repeat Simple_repeat 2 62 0 201 304 38 25 chr4 47830614 47830693 -136457969 - L3 LINE CR1 -9 1568 1489 421 307 26 0 chr4 47830879 47830993 -136457669 + MIR3 SINE MIR 85 201 -7 288 351 134 15 chr4 47831251 47831385 -136457277 - L2 LINE L2 -5 3267 3118 993 186 58 18 chr4 47831416 47831642 -136457020 + MER96B DNA MER1_type? 1 235 -182 355 286 165 43 chr4 47832284 47832539 -136456123 - HAL1b LINE L1 -61 1287 1002 1416 148 209 11 chr4 47832666 47832949 -136455713 - MER1B DNA MER1_type 0 339 1 25 31 0 0 chr4 47837774 47837806 -136450856 + AT_rich Low_complexity Low_complexity 1 32 0 202 259 17 0 chr4 47837843 47837901 -136450761 + (TA)n Simple_repeat Simple_repeat 1 59 0 180 77 0 0 chr4 47837907 47837933 -136450729 + (CA)n Simple_repeat Simple_repeat 2 27 0 1990 146 0 3 chr4 47839760 47840055 -136448607 - AluSx SINE Alu -18 294 1 714 278 116 80 chr4 47840080 47840595 -136448067 - MLT1G LTR MaLR -6 536 1 2257 100 0 0 chr4 47840730 47841020 -136447642 + AluSg SINE Alu 5 294 -16 2206 143 8 27 chr4 47842807 47843178 -136445484 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr4 47843275 47843296 -136445366 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr4 47843407 47843428 -136445234 + AT_rich Low_complexity Low_complexity 1 21 0 1147 239 75 22 chr4 47843880 47844185 -136444477 - MER114 LTR ERV -37 611 269 2181 89 7 13 chr4 47844185 47844488 -136444174 + AluSg SINE Alu 1 301 -9 1147 239 75 22 chr4 47844488 47844675 -136443987 - MER114 LTR ERV -379 269 93 1797 106 4 4 chr4 47844922 47845176 -136443486 - AluSq SINE Alu -26 287 34 299 229 29 0 chr4 47845355 47845425 -136443237 - MER94 DNA DNA -62 72 1 2500 33 0 13 chr4 47846017 47846317 -136442345 - AluY SINE Alu -15 296 1 2251 86 3 0 chr4 47846926 47847228 -136441434 + AluSc SINE Alu 1 303 -6 2759 28 0 0 chr4 47848948 47849266 -136439396 + AluYb8 SINE Alu 1 318 0 447 269 228 6 chr4 47849937 47850104 -136438558 - MIR SINE MIR -30 232 29 236 195 37 49 chr4 47850199 47850281 -136438381 - L1MC4a LINE L1 -1859 5949 5869 414 260 30 10 chr4 47850386 47850486 -136438176 - L1MC4a LINE L1 -2163 5645 5544 1085 286 21 58 chr4 47850586 47851069 -136437593 + L2 LINE L2 2848 3312 -1 185 274 94 0 chr4 47853441 47853547 -136435115 - L3 LINE CR1 -297 1280 1165 321 276 66 52 chr4 47853730 47853879 -136434783 + MIR SINE MIR 23 172 -62 190 280 220 64 chr4 47853899 47854082 -136434580 - MIR SINE MIR -7 255 31 6506 29 0 0 chr4 47854082 47854842 -136433820 + L1PA4 LINE L1 5393 6152 -3 190 280 220 64 chr4 47854842 47854876 -136433786 - MIR SINE MIR -231 31 4 351 0 0 0 chr4 47855871 47855910 -136432752 + (CA)n Simple_repeat Simple_repeat 2 40 0 222 298 60 99 chr4 47855993 47856144 -136432518 + L2 LINE L2 2608 2752 -562 1043 192 43 118 chr4 47906950 47907341 -136381321 - MLT1A1 LTR MaLR -2 363 2 27 62 0 0 chr4 47907564 47907612 -136381050 + AT_rich Low_complexity Low_complexity 1 48 0 29 28 0 0 chr4 47907708 47907744 -136380918 + AT_rich Low_complexity Low_complexity 1 36 0 22 70 0 0 chr4 47908046 47908089 -136380573 + AT_rich Low_complexity Low_complexity 1 43 0 261 0 0 0 chr4 47908546 47908575 -136380087 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 269 349 101 6 chr4 47909263 47909432 -136379230 - L2 LINE L2 -241 3072 2888 288 211 267 0 chr4 47909840 47909930 -136378732 + MER5A DNA MER1_type 73 186 -3 248 259 62 12 chr4 47909933 47910014 -136378648 + MIR SINE MIR 28 112 -150 190 330 85 8 chr4 47910809 47910927 -136377735 - L2 LINE L2 -4 3268 3142 193 335 121 36 chr4 47911138 47911386 -136377276 + L2 LINE L2 3002 3270 -2 294 299 58 35 chr4 47911839 47912013 -136376649 - MARNA DNA Mariner -227 359 182 679 298 121 27 chr4 47912145 47912651 -136376011 - L2 LINE L2 -31 3282 2709 513 284 42 34 chr4 47913186 47913425 -136375237 + MIR SINE MIR 8 248 -14 358 264 186 6 chr4 47914511 47914678 -136373984 - MIR SINE MIR -12 250 54 1802 159 7 4 chr4 47916945 47917222 -136371440 - AluJb SINE Alu -34 278 1 203 164 16 0 chr4 47917359 47917420 -136371242 + (TA)n Simple_repeat Simple_repeat 2 63 0 269 149 0 0 chr4 47917909 47917956 -136370706 + L2 LINE L2 3263 3309 -4 191 239 22 0 chr4 47918679 47918725 -136369937 + L2 LINE L2 2862 2908 -405 227 333 30 7 chr4 47919041 47919176 -136369486 + L2 LINE L2 2216 2353 -961 194 314 0 0 chr4 47919469 47919520 -136369142 - MIR3 SINE MIR -15 193 143 638 209 39 55 chr4 47921101 47921283 -136367379 - MIR SINE MIR -26 236 58 210 233 0 0 chr4 47921390 47921433 -136367229 + L3 LINE CR1 1113 1155 -422 202 294 0 0 chr4 47921449 47921500 -136367162 + L3 LINE CR1 1456 1506 -71 281 293 20 0 chr4 47922545 47922644 -136366018 + MIR SINE MIR 91 191 -71 733 261 128 53 chr4 47922656 47923093 -136365569 + L1MCc LINE L1 36 505 -5918 1556 273 62 53 chr4 47923297 47924146 -136364516 + L1MCc LINE L1 816 1669 -4892 2452 355 17 18 chr4 47924261 47925375 -136363287 + ERVL LTR ERVL 2463 3575 -2189 571 235 117 6 chr4 47925738 47925900 -136362762 - MER5A DNA MER1_type -2 187 8 256 254 63 0 chr4 47926474 47926537 -136362125 + L2 LINE L2 3203 3269 -3 8148 76 1 2 chr4 47926648 47927706 -136360956 + L1P LINE L1 3620 4676 -1470 1000 162 35 15 chr4 47928722 47928919 -136359743 + MLT1A1 LTR MaLR 1 201 -164 21 0 0 0 chr4 47929447 47929468 -136359194 + AT_rich Low_complexity Low_complexity 1 21 0 289 323 116 8 chr4 47929481 47929632 -136359030 + MIR SINE MIR 16 185 -62 * 393 275 53 48 chr4 47929626 47929664 -136358998 - L3 LINE CR1 -364 1213 1177 2423 93 3 0 chr4 47929664 47929974 -136358688 - AluSp SINE Alu -2 311 1 393 275 53 48 chr4 47929974 47930124 -136358538 - L3 LINE CR1 -400 1177 1024 801 95 0 0 chr4 47930245 47930350 -136358312 - AluSq/x SINE Alu -207 105 1 1112 240 53 0 chr4 47931656 47932013 -136356649 + L1ME1 LINE L1 5723 6166 0 2293 110 3 3 chr4 47932018 47932328 -136356334 + AluSg SINE Alu 1 310 0 268 172 188 16 chr4 47932486 47932550 -136356112 + MLT1J1 LTR MaLR 76 150 -296 1284 151 5 0 chr4 47932833 47933038 -136355624 - L1MB7 LINE L1 -251 5933 5728 472 231 77 62 chr4 47934053 47934248 -136354414 + MLT1K LTR MaLR 387 584 -4 297 252 183 9 chr4 47934251 47934366 -136354296 + L3 LINE CR1 1374 1508 -69 404 212 240 0 chr4 47934382 47934528 -136354134 - MIR SINE MIR -1 261 81 286 229 43 0 chr4 47934870 47934940 -136353722 - Charlie4 DNA MER1_type -1 1960 1888 364 260 29 0 chr4 47935661 47935765 -136352897 + MIR SINE MIR 48 154 -108 8507 109 25 4 chr4 47935773 47937017 -136351645 - Tigger1 DNA MER2_type 0 2418 1149 1760 140 41 3 chr4 47937117 47937409 -136351253 + L1M4 LINE L1 5484 5786 -398 491 245 0 0 chr4 47937409 47937503 -136351159 + MER21B LTR ERV1 1 94 -769 564 179 26 43 chr4 47937572 47937689 -136350973 - FLAM_A SINE Alu -27 115 1 2285 113 3 0 chr4 47937694 47937996 -136350666 - AluSx SINE Alu -7 305 3 1206 30 0 7 chr4 47938007 47938142 -136350520 - AluYb8 SINE Alu -164 154 21 206 215 49 153 chr4